BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781120|ref|YP_003065533.1| radical SAM protein
[Candidatus Liberibacter asiaticus str. psy62]
         (384 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040797|gb|ACT57593.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 384

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/384 (100%), Positives = 384/384 (100%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV
Sbjct: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS
Sbjct: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS
Sbjct: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA
Sbjct: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL
Sbjct: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA
Sbjct: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360

Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
           ACGQLKSLSKRIPKVPRQEMQITG
Sbjct: 361 ACGQLKSLSKRIPKVPRQEMQITG 384


>gi|315122584|ref|YP_004063073.1| radical SAM protein [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495986|gb|ADR52585.1| radical SAM protein [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 389

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/383 (85%), Positives = 359/383 (93%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN +KKESLIGM REE+EE+LLKIG+P   VRMRTSQIWKWIYVRG+RDF  MSDIS+E+
Sbjct: 1   MNIVKKESLIGMTREEIEESLLKIGVPPIQVRMRTSQIWKWIYVRGVRDFHFMSDISKEI 60

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R LL+QHF+I+YPEIVDEKISCDGTRKWLLRFPARCIG PV+IETVYIPEKSRGTLCVSS
Sbjct: 61  RCLLDQHFAIVYPEIVDEKISCDGTRKWLLRFPARCIGDPVDIETVYIPEKSRGTLCVSS 120

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSLTCSFCYTGTQ+LVRNLT EEILLQ+LL RSLLGDFPGCED+  MV+P VGRK+S
Sbjct: 121 QVGCSLTCSFCYTGTQQLVRNLTVEEILLQILLVRSLLGDFPGCEDMTEMVVPLVGRKVS 180

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIVMMGMGEPLCNFDNVKK+L IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA
Sbjct: 181 NIVMMGMGEPLCNFDNVKKALLIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHAV NDLRNILVPIN+KYPLEML+DACR+YPGLSN+RRITFEYVMLKGINDSPRDA+
Sbjct: 241 ISLHAVKNDLRNILVPINKKYPLEMLMDACRNYPGLSNSRRITFEYVMLKGINDSPRDAI 300

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LIK+LKGIPAKINLIPFNPWPGC+YLCSDQKDI  FSE +K+SGYSSPIRTPRGLDI A
Sbjct: 301 ELIKLLKGIPAKINLIPFNPWPGCDYLCSDQKDIEIFSEYVKKSGYSSPIRTPRGLDIFA 360

Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
           ACGQLKSLSKR+P++  ++ QIT
Sbjct: 361 ACGQLKSLSKRVPRISSKQAQIT 383


>gi|227823764|ref|YP_002827737.1| putative radical SAM enzyme, Cfr family [Sinorhizobium fredii
           NGR234]
 gi|259491994|sp|C3MAJ1|RLMN_RHISN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|227342766|gb|ACP26984.1| putative radical SAM enzyme, Cfr family [Sinorhizobium fredii
           NGR234]
          Length = 411

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 256/373 (68%), Positives = 315/373 (84%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG++RE++ + L++ G+P+R V+MR SQ+W W+YVRG+ DF  MS++S+++R +L
Sbjct: 25  EKPSLIGLLREDMAKLLVEKGVPERQVKMRVSQLWHWLYVRGVSDFDQMSNVSKDMREML 84

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +HF++  PEIV+E++S DGTRKWLLRFP R  G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 85  KEHFTVARPEIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 144

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQKLVRNLTAEEIL Q+LLAR  LGDFP  +  +G ++P+ GRKI+NIVM
Sbjct: 145 TLTCSFCHTGTQKLVRNLTAEEILAQLLLARDRLGDFPERDTPQGAIVPAEGRKITNIVM 204

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNVK +L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISLH
Sbjct: 205 MGMGEPLYNFDNVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLH 264

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV+++LR++LVPIN+KYPL+ L++ACR YPGLSNARRITFEYVMLK +NDS +DA  L+K
Sbjct: 265 AVNDELRDMLVPINKKYPLKELMEACRAYPGLSNARRITFEYVMLKDVNDSLQDAKELVK 324

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I ++GY+SPIRTPRG DILAACGQ
Sbjct: 325 LLKGIPAKINLIPFNPWPGTNYQCSDWEQIEAFADFINQAGYASPIRTPRGRDILAACGQ 384

Query: 365 LKSLSKRIPKVPR 377
           LKS S+R+ KV R
Sbjct: 385 LKSESERMRKVDR 397


>gi|150398262|ref|YP_001328729.1| radical SAM protein [Sinorhizobium medicae WSM419]
 gi|205829889|sp|A6UE14|RLMN_SINMW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|150029777|gb|ABR61894.1| radical SAM enzyme, Cfr family [Sinorhizobium medicae WSM419]
          Length = 413

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 256/373 (68%), Positives = 313/373 (83%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG++RE++ + L++ G+P+R V+MR SQ+W W+YVRG+ DF  MS++S+++R +L
Sbjct: 27  EKPSLIGLLREDMAKLLVEKGVPERQVKMRVSQVWHWLYVRGVSDFNEMSNVSKDMREML 86

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + HF+I  PEIV+E++S DGTRKWLLRFP R  G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 87  SAHFTIARPEIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 146

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQKLVRNLTAEEIL Q+LLAR  LGDFP  +  +G ++P+ GRKI+N+VM
Sbjct: 147 TLTCSFCHTGTQKLVRNLTAEEILAQLLLARDRLGDFPDRDTPQGAIVPAEGRKITNVVM 206

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NVK +L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISLH
Sbjct: 207 MGMGEPLYNFENVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLH 266

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +DLR++LVPIN+KYPL+ L++ACR YPGLSNARRITFEYVMLK +NDS  DA  L+K
Sbjct: 267 AVRDDLRDMLVPINKKYPLKELMEACRAYPGLSNARRITFEYVMLKDVNDSLEDAKELVK 326

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I ++GY+SPIRTPRG DILAACGQ
Sbjct: 327 LLKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINQAGYASPIRTPRGRDILAACGQ 386

Query: 365 LKSLSKRIPKVPR 377
           LKS S+R+ KV R
Sbjct: 387 LKSDSERMRKVDR 399


>gi|205829900|sp|Q2K3B1|RLMN_RHIEC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 409

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 256/373 (68%), Positives = 309/373 (82%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG+ REE+  AL + G+P++ ++MR SQ+W WIYVRG+ DF  M+++++++R +L
Sbjct: 22  EKPSLIGLSREEMAAALREKGVPEKQIKMRVSQLWNWIYVRGVSDFDHMTNVAKDMREML 81

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            QHF+I  PEIV+E++S DGTRKWLLRFPAR  G PVEIE VYIPE+ RGTLC+SSQVGC
Sbjct: 82  KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 141

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SNIVM
Sbjct: 142 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 201

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD VK++L IA+D  GLS SKRR+TLSTSG VP I R GEEIGVMLAISLH
Sbjct: 202 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISLH 261

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +NDS  DA  LIK
Sbjct: 262 AVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLIK 321

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+PAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACGQ
Sbjct: 322 LLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQ 381

Query: 365 LKSLSKRIPKVPR 377
           LKS S+R+ K  R
Sbjct: 382 LKSESERMRKTER 394


>gi|110635192|ref|YP_675400.1| radical SAM protein [Mesorhizobium sp. BNC1]
 gi|122965694|sp|Q11EE0|RLMN_MESSB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|110286176|gb|ABG64235.1| 23S rRNA m(2)A-2503 methyltransferase [Chelativorans sp. BNC1]
          Length = 408

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 258/384 (67%), Positives = 313/384 (81%), Gaps = 3/384 (0%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+ LIG+ REE+ +AL  IG+P+R V MR  Q+W W+YVRG+ DF  M +IS+E+R  
Sbjct: 22  VEKKPLIGLSREEMAQALASIGVPERQVNMRVRQLWHWLYVRGVSDFSRMFNISKELRAK 81

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L++HF+I  PEIV+E+IS DGTRKWLLRFP R  G PVE+ETVYIPE+ RGTLC+SSQVG
Sbjct: 82  LDEHFTIARPEIVEEQISQDGTRKWLLRFPPRGAGRPVEVETVYIPEEDRGTLCISSQVG 141

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTCSFC+TGTQK+VRNLTA EIL Q+L+AR  LGDFP  +  +G ++P+ GRKI+NIV
Sbjct: 142 CTLTCSFCHTGTQKMVRNLTAGEILDQLLIARDRLGDFPDADTPDGAIVPAEGRKITNIV 201

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NF+NVK++L +ASD  GLS SKRRITLSTSG VP I R GEEIG+MLAISL
Sbjct: 202 MMGMGEPLYNFENVKQALLVASDGDGLSLSKRRITLSTSGVVPEIYRTGEEIGIMLAISL 261

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV ++LRN LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLKG+NDS  DA  L+
Sbjct: 262 HAVRDELRNELVPINKKYPLKDLLDACRAYPGLSNARRITFEYVMLKGVNDSLDDARELV 321

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKGIPAKINLIPFNPWPG  Y CSD + I  F+E + R+GY+SPIRTPRG DILAACG
Sbjct: 322 RLLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFAELVNRAGYASPIRTPRGRDILAACG 381

Query: 364 QLKSLSKRIPKVPR---QEMQITG 384
           QLKS S+R+ K  R   + M I G
Sbjct: 382 QLKSASERMKKTERLKLEAMMIAG 405


>gi|15966967|ref|NP_387320.1| hypothetical protein SMc03831 [Sinorhizobium meliloti 1021]
 gi|307301740|ref|ZP_07581499.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti BL225C]
 gi|307316235|ref|ZP_07595679.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti AK83]
 gi|81633717|sp|Q92L68|RLMN_RHIME RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|15076240|emb|CAC47793.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306898075|gb|EFN28817.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti AK83]
 gi|306903438|gb|EFN34027.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti BL225C]
          Length = 411

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 255/373 (68%), Positives = 312/373 (83%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG++R+++ + L + G+P+R V+MR SQ+W W+YVRG+ DF  MS++S+++R +L
Sbjct: 25  EKPSLIGLLRDDIAKLLAEKGVPERQVKMRVSQLWHWLYVRGVSDFDEMSNVSKDMREML 84

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +HF+I  P+IV+E++S DGTRKWLLRFP R  G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 85  KEHFTIARPDIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 144

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQKLVRNLTAEEIL Q+LLAR  LGDFP  +  +G ++P+ GRKI+NIVM
Sbjct: 145 TLTCSFCHTGTQKLVRNLTAEEILSQLLLARDRLGDFPERDTPQGAIVPAEGRKITNIVM 204

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NVK +L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISLH
Sbjct: 205 MGMGEPLYNFENVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLH 264

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +DLR++LVPIN+KYPL+ L++ACR YPGLSNARRITFEYVMLK +NDS  DA  L+K
Sbjct: 265 AVRDDLRDMLVPINKKYPLKQLMEACRAYPGLSNARRITFEYVMLKDVNDSLEDAKELVK 324

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I ++GY+SPIRTPRG DILAACGQ
Sbjct: 325 LLKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINQAGYASPIRTPRGRDILAACGQ 384

Query: 365 LKSLSKRIPKVPR 377
           LKS S+R+ KV R
Sbjct: 385 LKSESERMRKVDR 397


>gi|327190218|gb|EGE57323.1| hypothetical protein RHECNPAF_44600102 [Rhizobium etli CNPAF512]
          Length = 411

 Score =  541 bits (1394), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 254/373 (68%), Positives = 308/373 (82%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG+ REE+  AL + G+ ++ ++MR +Q+W WIYVRG+ DF  M+++++++R +L
Sbjct: 24  EKPSLIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 83

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            QHF+I  PEIV+E++S DGTRKWLLRFPAR  G PVEIE VYIPE+ RGTLC+SSQVGC
Sbjct: 84  KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 143

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SNIVM
Sbjct: 144 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 203

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD VK++L IA+D  GLS SKRR+TLSTSG VP I R GEEIGVMLAISLH
Sbjct: 204 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISLH 263

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +NDS  DA  LIK
Sbjct: 264 AVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLIK 323

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+PAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACGQ
Sbjct: 324 LLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQ 383

Query: 365 LKSLSKRIPKVPR 377
           LKS S+R+ K  R
Sbjct: 384 LKSESERMRKTER 396


>gi|239830929|ref|ZP_04679258.1| radical SAM enzyme, Cfr family [Ochrobactrum intermedium LMG 3301]
 gi|239823196|gb|EEQ94764.1| radical SAM enzyme, Cfr family [Ochrobactrum intermedium LMG 3301]
          Length = 411

 Score =  541 bits (1394), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 259/382 (67%), Positives = 310/382 (81%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+ +AL+K+G+P+R  +MR SQ+W W+YVRG+ DF  M +IS+++R LL 
Sbjct: 27  KPSLIGMSREEMAQALIKVGVPERQTKMRISQLWHWLYVRGVSDFADMRNISKDLRALLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLEDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERMRKSERLALEAMMIAG 408


>gi|153007435|ref|YP_001368650.1| radical SAM protein [Ochrobactrum anthropi ATCC 49188]
 gi|205829793|sp|A6WV17|RLMN_OCHA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|151559323|gb|ABS12821.1| radical SAM enzyme, Cfr family [Ochrobactrum anthropi ATCC 49188]
          Length = 411

 Score =  541 bits (1393), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 260/382 (68%), Positives = 310/382 (81%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+ EAL+K G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAEALIKAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLCVSSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCVSSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLEDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CS+ + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSEWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERMRKSERLALEAMMIAG 408


>gi|190893778|ref|YP_001980320.1| hypothetical protein RHECIAT_CH0004213 [Rhizobium etli CIAT 652]
 gi|254807196|sp|B3PQY8|RLMN_RHIE6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|190699057|gb|ACE93142.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 409

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 253/373 (67%), Positives = 308/373 (82%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG+ R+E+  AL + G+ ++ ++MR +Q+W WIYVRG+ DF  M+++++++R +L
Sbjct: 22  EKPSLIGLSRQEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 81

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            QHF+I  PEIV+E++S DGTRKWLLRFPAR  G PVEIE VYIPE+ RGTLC+SSQVGC
Sbjct: 82  KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 141

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SNIVM
Sbjct: 142 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 201

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD VK++L IA+D  GLS SKRR+TLSTSG VP I R GEEIGVMLAISLH
Sbjct: 202 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISLH 261

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +NDS  DA  LIK
Sbjct: 262 AVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLIK 321

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+PAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACGQ
Sbjct: 322 LLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQ 381

Query: 365 LKSLSKRIPKVPR 377
           LKS S+R+ K  R
Sbjct: 382 LKSESERMRKTER 394


>gi|116254249|ref|YP_770087.1| hypothetical protein RL4522 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|123384474|sp|Q1MAN2|RLMN_RHIL3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|115258897|emb|CAK10006.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 408

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 254/374 (67%), Positives = 308/374 (82%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L+K SLIGM REE+  AL + G+ ++ ++MR SQ+W WIYVRG+ DF  M+++++++R +
Sbjct: 20  LEKPSLIGMSREEMGAALREKGVAEKQIKMRVSQLWNWIYVRGVSDFDHMTNVAKDMREM 79

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L QHF+I  PEIV+E++S DGTRKWLLRFP R  G PVEIE VYIPE+ RGTLC+SSQVG
Sbjct: 80  LKQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIPEEGRGTLCISSQVG 139

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SNIV
Sbjct: 140 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 199

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFD VK++L IA+D  GLS S+RR+TLSTSG VP I R GEEIGVMLAISL
Sbjct: 200 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAISL 259

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV +DLR++LVPIN+KYPL+ LI+ACR YPGLSNARRITFEYVMLK +NDS  DA  LI
Sbjct: 260 HAVRDDLRDLLVPINKKYPLKELIEACRTYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 319

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKG+PAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACG
Sbjct: 320 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 379

Query: 364 QLKSLSKRIPKVPR 377
           QLKS S+R+ K  R
Sbjct: 380 QLKSESERMRKTER 393


>gi|118592064|ref|ZP_01549458.1| hypothetical protein SIAM614_25347 [Stappia aggregata IAM 12614]
 gi|118435360|gb|EAV42007.1| hypothetical protein SIAM614_25347 [Stappia aggregata IAM 12614]
          Length = 407

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 252/375 (67%), Positives = 310/375 (82%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +LIG+ REEL EAL  IG+PQ+  RMR SQ+W W+YVRG+ DF  M++I++++R  L+
Sbjct: 30  KPTLIGLSREELGEALGTIGVPQKQWRMRASQLWHWLYVRGVSDFAQMTNIAKDLRQKLD 89

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F+I  PEIV E+IS DGTRKWL RFPAR  G PVE+ETVYIPE+ RGTLCVSSQVGC+
Sbjct: 90  EAFTIARPEIVSEQISVDGTRKWLFRFPARGAGRPVEVETVYIPEEGRGTLCVSSQVGCT 149

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTC+FC+TGTQK+VRNLTAEEIL Q+L+AR  LGDFP  +  +G ++PS GR ++NIVMM
Sbjct: 150 LTCTFCHTGTQKMVRNLTAEEILSQILIARDRLGDFPHADTPQGAIVPSEGRLVTNIVMM 209

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNVKK+L IASD  GLS SKRRITLSTSG VP I R GEEIG MLAISLHA
Sbjct: 210 GMGEPLYNFDNVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGCMLAISLHA 269

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR++LVPIN+K+ ++ L+DACR YPGLSNA+RITFEYVMLKG+NDS +DAL L+++
Sbjct: 270 VRDELRDVLVPINKKWNIKELLDACRQYPGLSNAKRITFEYVMLKGVNDSNKDALELVRL 329

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG +Y CSD + I  F++ + R+GY+SPIRTPRG DI AACGQL
Sbjct: 330 LKGIPAKINLIPFNPWPGTDYECSDWERIEEFADIVNRAGYASPIRTPRGRDIFAACGQL 389

Query: 366 KSLSKRIPKVPRQEM 380
           KS S+R+ K  R+ +
Sbjct: 390 KSASERMRKKDREAL 404


>gi|241206731|ref|YP_002977827.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860621|gb|ACS58288.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 409

 Score =  538 bits (1385), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 253/374 (67%), Positives = 309/374 (82%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K SLIG+ REE+  AL + G+ ++ ++MR SQ+W WIYVRG+ DF  M+++++++R +
Sbjct: 21  VEKPSLIGLSREEMGAALREKGVAEKQIKMRVSQLWNWIYVRGVSDFDHMTNVAKDMREM 80

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L QHF+I  PEIV+E++S DGTRKWLLRFPAR  G PVEIE VYIPE+ RGTLC+SSQVG
Sbjct: 81  LKQHFTIERPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCLSSQVG 140

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SNIV
Sbjct: 141 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 200

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFD VK++L IA+D  GLS S+RR+TLSTSG VP I R GEEIGVMLAISL
Sbjct: 201 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAISL 260

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV +DLR++LVPIN+KYPL+ LI+ACR YPGLSNARRITFEYVMLK +NDS  DA  LI
Sbjct: 261 HAVRDDLRDLLVPINKKYPLKELIEACRTYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 320

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKG+PAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACG
Sbjct: 321 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 380

Query: 364 QLKSLSKRIPKVPR 377
           QLKS S+R+ K  R
Sbjct: 381 QLKSESERMRKTDR 394


>gi|260467307|ref|ZP_05813481.1| radical SAM enzyme, Cfr family [Mesorhizobium opportunistum
           WSM2075]
 gi|259028911|gb|EEW30213.1| radical SAM enzyme, Cfr family [Mesorhizobium opportunistum
           WSM2075]
          Length = 466

 Score =  537 bits (1384), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/384 (68%), Positives = 309/384 (80%), Gaps = 4/384 (1%)

Query: 5   KKESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K SLIG+ R EL EAL+  GI P+R  +MR  Q+W W+YVRG+ DF GM +IS+++R  
Sbjct: 79  EKPSLIGLTRAELGEALVASGIVPERQAKMRAQQLWHWMYVRGVSDFAGMFNISKDLRAE 138

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L++HF++  PEIV+E+IS DGTRKWL RFP R  G PVEIETVYIPE+ RGTLC+SSQVG
Sbjct: 139 LDKHFTVARPEIVEEQISADGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVG 198

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTCSFC+TGTQKLVRNLTAEEIL Q+L AR  LGDFP  +  +G ++P+ GRK+SNIV
Sbjct: 199 CTLTCSFCHTGTQKLVRNLTAEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSNIV 258

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISL
Sbjct: 259 MMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAISL 318

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++DLR++LVPIN+KYPL+ LI ACR YPGLSNARRITFEYVMLK +NDS  DA  LI
Sbjct: 319 HATNDDLRDLLVPINKKYPLKDLIAACRAYPGLSNARRITFEYVMLKDVNDSIEDAKGLI 378

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACG
Sbjct: 379 KLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACG 438

Query: 364 QLKSLSKRIPKVPR---QEMQITG 384
           QLKS S+R+ KV R   + M I G
Sbjct: 439 QLKSESERMRKVDRLALEAMMIAG 462


>gi|306846345|ref|ZP_07478896.1| radical SAM enzyme, Cfr family [Brucella sp. BO1]
 gi|306273188|gb|EFM55079.1| radical SAM enzyme, Cfr family [Brucella sp. BO1]
          Length = 411

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 258/382 (67%), Positives = 308/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  AL+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|222087496|ref|YP_002546033.1| hypothetical protein Arad_4378 [Agrobacterium radiobacter K84]
 gi|254807146|sp|B9JCI9|RLMN_AGRRK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|221724944|gb|ACM28100.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 411

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 255/372 (68%), Positives = 306/372 (82%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ REE+  AL + G+  + V+MR SQ+W WIYVRG+ DF  M+++S+++R +L 
Sbjct: 26  KPSLIGLTREEMGAALKEKGVADKQVKMRVSQLWNWIYVRGVSDFDAMANVSKDMREMLK 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HF+I  PEIV+E++S DGTRKWLLRFP R  G PVE+ETVYIPE+ RGTLCVSSQVGCS
Sbjct: 86  AHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEVETVYIPEEGRGTLCVSSQVGCS 145

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SN+VMM
Sbjct: 146 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNMVMM 205

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF++VK +L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 206 GMGEPLYNFESVKTALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 265

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V +DLR++LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLKG+NDS  DA  LI++
Sbjct: 266 VRDDLRDMLVPINKKYPLKELMDACRAYPGLSNARRITFEYVMLKGVNDSLEDAKGLIQL 325

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIP+KINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACGQL
Sbjct: 326 LKGIPSKINLIPFNPWPGTNYQCSDWEQIEKFADFINAAGYASPIRTPRGRDILAACGQL 385

Query: 366 KSLSKRIPKVPR 377
           KS S+R+ K  R
Sbjct: 386 KSDSERMRKTER 397


>gi|209551296|ref|YP_002283213.1| radical SAM protein [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|254807197|sp|B5ZTF1|RLMN_RHILW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|209537052|gb|ACI56987.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 408

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 252/374 (67%), Positives = 308/374 (82%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L+K SLIG+ REE+  AL + G+ ++ ++MR +Q+W WIYVRG+ DF  M+++++++R +
Sbjct: 20  LEKPSLIGLSREEMGAALRERGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREM 79

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L QHF+I  PEIV+E++S DGTRKWLLRFP R  G PVEIE VYIPE+ RGTLC+SSQVG
Sbjct: 80  LKQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIPEEGRGTLCISSQVG 139

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SNIV
Sbjct: 140 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 199

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFD VK++L IA+D  GLS S+RR+TLSTSG VP I R GEEIGVMLAISL
Sbjct: 200 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAISL 259

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV +DLR+ILVPIN+KYPL+ LI+AC+ YPGLSNARRITFEYVMLK +NDS  DA  LI
Sbjct: 260 HAVRDDLRDILVPINKKYPLKELIEACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 319

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKG+PAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACG
Sbjct: 320 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 379

Query: 364 QLKSLSKRIPKVPR 377
           QLKS S+R+ K  R
Sbjct: 380 QLKSESERMRKTER 393


>gi|306842623|ref|ZP_07475272.1| radical SAM enzyme, Cfr family [Brucella sp. BO2]
 gi|306287268|gb|EFM58756.1| radical SAM enzyme, Cfr family [Brucella sp. BO2]
          Length = 411

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+   L+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAATLIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|307942545|ref|ZP_07657893.1| radical SAM enzyme, Cfr family [Roseibium sp. TrichSKD4]
 gi|307774184|gb|EFO33397.1| radical SAM enzyme, Cfr family [Roseibium sp. TrichSKD4]
          Length = 406

 Score =  535 bits (1378), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 250/376 (66%), Positives = 308/376 (81%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+G+ RE+L EAL  IGIP +  RMR +Q+W W+YVRG+ DF  M++I++++R  L
Sbjct: 30  EKPNLVGLDREQLAEALGGIGIPVKQQRMRVAQLWHWLYVRGVSDFGAMTNIAKDLRAQL 89

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            ++FSI  PEIV E+IS DGTRKWL RFP R  G PVE+ETVYIPE+ RGTLCVSSQVGC
Sbjct: 90  EENFSIARPEIVSEQISVDGTRKWLFRFPPRGAGRPVEVETVYIPEEGRGTLCVSSQVGC 149

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTC+FC+TGTQKLVRNLT+EEIL Q+L+AR LLGDFP  +  +G ++PS GR +SNIVM
Sbjct: 150 TLTCTFCHTGTQKLVRNLTSEEILAQILMARDLLGDFPEAKTPQGAIVPSEGRLVSNIVM 209

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NVK++L IASD  GLS SKRRITLSTSG VP IAR G+EIG MLAISLH
Sbjct: 210 MGMGEPLYNFENVKRALLIASDGDGLSLSKRRITLSTSGVVPEIARTGDEIGCMLAISLH 269

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +DLR++LVPIN+K+ LE L+D CR YPGLSNA+RITFEYVMLKG+NDS  DA  L++
Sbjct: 270 AVRDDLRDVLVPINKKWSLEKLLDTCRAYPGLSNAKRITFEYVMLKGVNDSNADAKQLVQ 329

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG +Y CSD + I  F++ + R+GY+SPIRTPRG DI AACGQ
Sbjct: 330 LLKGIPAKINLIPFNPWPGSDYECSDWERIEEFADIVNRAGYASPIRTPRGRDIFAACGQ 389

Query: 365 LKSLSKRIPKVPRQEM 380
           LKS S+R+ K  R+ +
Sbjct: 390 LKSASERMRKKDREAL 405


>gi|319780692|ref|YP_004140168.1| radical SAM enzyme, Cfr family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166580|gb|ADV10118.1| radical SAM enzyme, Cfr family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 411

 Score =  535 bits (1378), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 259/384 (67%), Positives = 309/384 (80%), Gaps = 4/384 (1%)

Query: 5   KKESLIGMMREELEEALLKIG-IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K+SLIG+ R EL E L+  G +P+R  +MR  Q+W W+YVRG+ DF GM +IS+++R  
Sbjct: 24  EKQSLIGLTRIELAETLVASGAVPERQAKMRAQQLWHWMYVRGVSDFAGMFNISKDLRAE 83

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L++HF++  PEIV+E+IS DGTRKWL RFP R  G PVEIETVYIPE+ RGTLC+SSQVG
Sbjct: 84  LDKHFTVARPEIVEEQISADGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVG 143

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTCSFC+TGTQKLVRNLTAEEIL Q+L AR  LGDFP  +  +G ++P+ GRK+SNIV
Sbjct: 144 CTLTCSFCHTGTQKLVRNLTAEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSNIV 203

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISL
Sbjct: 204 MMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAISL 263

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++DLR++LVPIN+KYPL+ LI ACR YPGLSNA+RITFEYVMLK +NDS  DA  LI
Sbjct: 264 HATNDDLRDLLVPINKKYPLKELIAACRAYPGLSNAKRITFEYVMLKDVNDSIEDAKGLI 323

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACG
Sbjct: 324 KLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACG 383

Query: 364 QLKSLSKRIPKVPR---QEMQITG 384
           QLKS S+R+ KV R   + M I G
Sbjct: 384 QLKSDSERMRKVDRLALEAMMIAG 407


>gi|225851618|ref|YP_002731851.1| radical SAM protein [Brucella melitensis ATCC 23457]
 gi|256264871|ref|ZP_05467403.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 2 str. 63/9]
 gi|254807158|sp|C0RGD9|RLMN_BRUMB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|225639983|gb|ACN99896.1| radical SAM enzyme, Cfr family protein [Brucella melitensis ATCC
           23457]
 gi|263095326|gb|EEZ18953.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 2 str. 63/9]
 gi|326408090|gb|ADZ65155.1| radical SAM protein [Brucella melitensis M28]
 gi|326537806|gb|ADZ86021.1| radical SAM enzyme, Cfr family protein [Brucella melitensis M5-90]
          Length = 411

 Score =  535 bits (1377), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  AL+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRSAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPL  LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|256112582|ref|ZP_05453503.1| radical SAM protein [Brucella melitensis bv. 3 str. Ether]
 gi|265994024|ref|ZP_06106581.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 3 str. Ether]
 gi|262765005|gb|EEZ10926.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 3 str. Ether]
          Length = 411

 Score =  535 bits (1377), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  AL+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPL  LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|17988150|ref|NP_540784.1| florfenicol resistance protein [Brucella melitensis bv. 1 str. 16M]
 gi|148559330|ref|YP_001258119.1| hypothetical protein BOV_0076 [Brucella ovis ATCC 25840]
 gi|161618064|ref|YP_001591951.1| radical SAM protein [Brucella canis ATCC 23365]
 gi|163842351|ref|YP_001626755.1| radical SAM protein [Brucella suis ATCC 23445]
 gi|225626623|ref|ZP_03784662.1| radical SAM enzyme, Cfr family protein [Brucella ceti str. Cudo]
 gi|254694877|ref|ZP_05156705.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya]
 gi|254700891|ref|ZP_05162719.1| radical SAM protein [Brucella suis bv. 5 str. 513]
 gi|254705255|ref|ZP_05167083.1| radical SAM protein [Brucella suis bv. 3 str. 686]
 gi|254707222|ref|ZP_05169050.1| radical SAM protein [Brucella pinnipedialis M163/99/10]
 gi|254709233|ref|ZP_05171044.1| radical SAM protein [Brucella pinnipedialis B2/94]
 gi|254713344|ref|ZP_05175155.1| radical SAM protein [Brucella ceti M644/93/1]
 gi|254716302|ref|ZP_05178113.1| radical SAM protein [Brucella ceti M13/05/1]
 gi|254718297|ref|ZP_05180108.1| radical SAM protein [Brucella sp. 83/13]
 gi|256030756|ref|ZP_05444370.1| radical SAM protein [Brucella pinnipedialis M292/94/1]
 gi|256045869|ref|ZP_05448743.1| radical SAM protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256158774|ref|ZP_05456640.1| radical SAM protein [Brucella ceti M490/95/1]
 gi|256254161|ref|ZP_05459697.1| radical SAM protein [Brucella ceti B1/94]
 gi|256368543|ref|YP_003106049.1| radical SAM protein [Brucella microti CCM 4915]
 gi|260169660|ref|ZP_05756471.1| radical SAM protein [Brucella sp. F5/99]
 gi|260563156|ref|ZP_05833642.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 1 str. 16M]
 gi|260567277|ref|ZP_05837747.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
           4 str. 40]
 gi|261215209|ref|ZP_05929490.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya]
 gi|261218081|ref|ZP_05932362.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           M13/05/1]
 gi|261221308|ref|ZP_05935589.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           B1/94]
 gi|261314704|ref|ZP_05953901.1| ribosomal RNA large subunit methyltransferase N [Brucella
           pinnipedialis M163/99/10]
 gi|261316737|ref|ZP_05955934.1| ribosomal RNA large subunit methyltransferase N [Brucella
           pinnipedialis B2/94]
 gi|261321072|ref|ZP_05960269.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           M644/93/1]
 gi|261751404|ref|ZP_05995113.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
           5 str. 513]
 gi|261755967|ref|ZP_05999676.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
           3 str. 686]
 gi|261759193|ref|ZP_06002902.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
           F5/99]
 gi|265983258|ref|ZP_06095993.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
           83/13]
 gi|265987808|ref|ZP_06100365.1| ribosomal RNA large subunit methyltransferase N [Brucella
           pinnipedialis M292/94/1]
 gi|265992284|ref|ZP_06104841.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265997270|ref|ZP_06109827.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           M490/95/1]
 gi|306838909|ref|ZP_07471737.1| radical SAM enzyme, Cfr family [Brucella sp. NF 2653]
 gi|81851121|sp|Q8YEL1|RLMN_BRUME RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829674|sp|A9M6S9|RLMN_BRUC2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829675|sp|A5VN22|RLMN_BRUO2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829676|sp|B0CII9|RLMN_BRUSI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|17983908|gb|AAL53048.1| florfenicol resistance protein [Brucella melitensis bv. 1 str. 16M]
 gi|148370587|gb|ABQ60566.1| conserved hypothetical protein TIGR00048 [Brucella ovis ATCC 25840]
 gi|161334875|gb|ABX61180.1| radical SAM enzyme, Cfr family [Brucella canis ATCC 23365]
 gi|163673074|gb|ABY37185.1| radical SAM enzyme, Cfr family [Brucella suis ATCC 23445]
 gi|225618280|gb|EEH15323.1| radical SAM enzyme, Cfr family protein [Brucella ceti str. Cudo]
 gi|255998701|gb|ACU47100.1| radical SAM protein [Brucella microti CCM 4915]
 gi|260153172|gb|EEW88264.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 1 str. 16M]
 gi|260156795|gb|EEW91875.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
           4 str. 40]
 gi|260916816|gb|EEX83677.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya]
 gi|260919892|gb|EEX86545.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           B1/94]
 gi|260923170|gb|EEX89738.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           M13/05/1]
 gi|261293762|gb|EEX97258.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           M644/93/1]
 gi|261295960|gb|EEX99456.1| ribosomal RNA large subunit methyltransferase N [Brucella
           pinnipedialis B2/94]
 gi|261303730|gb|EEY07227.1| ribosomal RNA large subunit methyltransferase N [Brucella
           pinnipedialis M163/99/10]
 gi|261739177|gb|EEY27173.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
           F5/99]
 gi|261741157|gb|EEY29083.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
           5 str. 513]
 gi|261745720|gb|EEY33646.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
           3 str. 686]
 gi|262551738|gb|EEZ07728.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           M490/95/1]
 gi|263003350|gb|EEZ15643.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|264660005|gb|EEZ30266.1| ribosomal RNA large subunit methyltransferase N [Brucella
           pinnipedialis M292/94/1]
 gi|264661850|gb|EEZ32111.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
           83/13]
 gi|306406025|gb|EFM62276.1| radical SAM enzyme, Cfr family [Brucella sp. NF 2653]
          Length = 411

 Score =  534 bits (1376), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  AL+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPL  LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|13473680|ref|NP_105248.1| hypothetical protein mlr4359 [Mesorhizobium loti MAFF303099]
 gi|81778968|sp|Q98E86|RLMN_RHILO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|14024431|dbj|BAB51034.1| mlr4359 [Mesorhizobium loti MAFF303099]
          Length = 410

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 260/384 (67%), Positives = 308/384 (80%), Gaps = 4/384 (1%)

Query: 5   KKESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K SLIG+ R EL EAL+  GI P+R  +MR  Q+W W+YVRG+ DF GM +IS+++R  
Sbjct: 23  EKPSLIGLTRAELGEALVASGIVPERQAKMRAQQLWHWMYVRGVSDFAGMFNISKDLRAE 82

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L++HF++  PEIV+E+IS DGTRKWL RFP R  G PVEIETVYIPE+ RGTLC+SSQVG
Sbjct: 83  LDKHFTVARPEIVEEQISSDGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVG 142

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTCSFC+TGTQKLVRNLT EEIL Q+L AR  LGDFP  +  +G ++P+ GRK+SNIV
Sbjct: 143 CTLTCSFCHTGTQKLVRNLTTEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSNIV 202

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISL
Sbjct: 203 MMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAISL 262

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++DLR++LVPIN+KYPL+ LI ACR YPGLSNA+RITFEYVMLK +NDS  DA  LI
Sbjct: 263 HATNDDLRDLLVPINKKYPLKELIAACRAYPGLSNAKRITFEYVMLKDVNDSIEDAKGLI 322

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACG
Sbjct: 323 KLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACG 382

Query: 364 QLKSLSKRIPKVPR---QEMQITG 384
           QLKS S+R+ KV R   + M I G
Sbjct: 383 QLKSESERMRKVDRLALEAMMIAG 406


>gi|325294043|ref|YP_004279907.1| Ribosomal RNA large subunit methyltransferase N [Agrobacterium sp.
           H13-3]
 gi|325061896|gb|ADY65587.1| Ribosomal RNA large subunit methyltransferase N [Agrobacterium sp.
           H13-3]
          Length = 412

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/372 (67%), Positives = 305/372 (81%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+ EAL +IG+PQ+ V+MR SQ+W W+YVRG+ DF  M+++++E+R  L 
Sbjct: 26  KPSLIGMTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNMTNVAKELREKLK 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F+I  PEIV+E+IS DGTRKWL+RFP R  G PVEIETVYIPE+ RGTLC+SSQVGCS
Sbjct: 86  AAFTIARPEIVEEQISNDGTRKWLMRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGCS 145

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP      G  +PS GRK+SNIVMM
Sbjct: 146 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPSEGRKVSNIVMM 205

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF++VK +L IA+D  GLS SKRR+TLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 206 GMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGDEIGVMLAISLHA 265

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V +DLR++LVPIN+KYPL+ LI+ACR+YPG+SNARRITFEYVMLK +NDS  DA  L+++
Sbjct: 266 VRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVNDSLEDAKMLVQL 325

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+PAKINLIPFNPWPG  Y CS+   I  F++ I ++GY+SPIRTPRG DILAACGQL
Sbjct: 326 LRGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILAACGQL 385

Query: 366 KSLSKRIPKVPR 377
           KS S+R+ K  R
Sbjct: 386 KSESERMRKTER 397


>gi|205829733|sp|Q7CWI1|RLMN_AGRT5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 409

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/372 (67%), Positives = 305/372 (81%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ REE+ EAL +IG+PQ+ V+MR SQ+W W+YVRG+ DF  M+++++E+R  L 
Sbjct: 23  KPSLIGLTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNMTNVAKELREKLK 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F+I  PEIV+E+IS DGTRKWL+RFP R  G PVEIETVYIPE+ RGTLC+SSQVGCS
Sbjct: 83  AAFTIARPEIVEEQISNDGTRKWLMRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGCS 142

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP      G  +PS GRK+SNIVMM
Sbjct: 143 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPSEGRKVSNIVMM 202

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF++VK +L IA+D  GLS SKRR+TLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 203 GMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGDEIGVMLAISLHA 262

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V +DLR++LVPIN+KYPL+ LI+ACR+YPG+SNARRITFEYVMLK +NDS  DA  L+++
Sbjct: 263 VRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVNDSLEDAKMLVQL 322

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+PAKINLIPFNPWPG  Y CS+   I  F++ I ++GY+SPIRTPRG DILAACGQL
Sbjct: 323 LKGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILAACGQL 382

Query: 366 KSLSKRIPKVPR 377
           KS S+R+ K  R
Sbjct: 383 KSESERMRKTER 394


>gi|294851482|ref|ZP_06792155.1| cfr family radical SAM enzyme [Brucella sp. NVSL 07-0026]
 gi|294820071|gb|EFG37070.1| cfr family radical SAM enzyme [Brucella sp. NVSL 07-0026]
          Length = 411

 Score =  531 bits (1369), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/382 (67%), Positives = 306/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  A +  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMATARIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPL  LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|159185320|ref|NP_355610.2| hypothetical protein Atu2673 [Agrobacterium tumefaciens str. C58]
 gi|159140577|gb|AAK88395.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 390

 Score =  531 bits (1368), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/372 (67%), Positives = 305/372 (81%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ REE+ EAL +IG+PQ+ V+MR SQ+W W+YVRG+ DF  M+++++E+R  L 
Sbjct: 4   KPSLIGLTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNMTNVAKELREKLK 63

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F+I  PEIV+E+IS DGTRKWL+RFP R  G PVEIETVYIPE+ RGTLC+SSQVGCS
Sbjct: 64  AAFTIARPEIVEEQISNDGTRKWLMRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGCS 123

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP      G  +PS GRK+SNIVMM
Sbjct: 124 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPSEGRKVSNIVMM 183

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF++VK +L IA+D  GLS SKRR+TLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 184 GMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGDEIGVMLAISLHA 243

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V +DLR++LVPIN+KYPL+ LI+ACR+YPG+SNARRITFEYVMLK +NDS  DA  L+++
Sbjct: 244 VRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVNDSLEDAKMLVQL 303

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+PAKINLIPFNPWPG  Y CS+   I  F++ I ++GY+SPIRTPRG DILAACGQL
Sbjct: 304 LKGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILAACGQL 363

Query: 366 KSLSKRIPKVPR 377
           KS S+R+ K  R
Sbjct: 364 KSESERMRKTER 375


>gi|328541802|ref|YP_004301911.1| ribosomal RNA large subunit methyltransferase N [polymorphum gilvum
           SL003B-26A1]
 gi|326411554|gb|ADZ68617.1| Ribosomal RNA large subunit methyltransferase N [Polymorphum gilvum
           SL003B-26A1]
          Length = 414

 Score =  531 bits (1368), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 249/375 (66%), Positives = 306/375 (81%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + +LIG+ R+EL +A+ +IG+P++  RMR +Q+W W+YVRG+ DF  M++I++++R  L+
Sbjct: 36  RPTLIGLTRDELADAMGEIGVPEKQRRMRAAQLWHWLYVRGVSDFALMTNIAKDLRQQLD 95

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F+I  PEIV E+IS DGTRKWL RFP R  G PVEIETVYIPE+ RGTLCVSSQVGC+
Sbjct: 96  ARFTIARPEIVSEQISVDGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCVSSQVGCT 155

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTC+FC+TGTQKLVRNLTAEEIL Q+L+AR  LGDFP     +G V+PS GR +SNIVMM
Sbjct: 156 LTCTFCHTGTQKLVRNLTAEEILSQILMARDRLGDFPDAATPQGAVVPSEGRLVSNIVMM 215

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NVKK+L IASD  GLS SKRRITLSTSG VP IAR G EIG MLAISLHA
Sbjct: 216 GMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVVPEIARAGAEIGCMLAISLHA 275

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V++DLR++LVPINRK+ +  L+DACR YPGLSNA+RITFEYVMLKG+NDS  DA  L+++
Sbjct: 276 VNDDLRDVLVPINRKWRIRDLLDACRAYPGLSNAKRITFEYVMLKGVNDSDADARELVRL 335

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG +Y CSD + I  F++ + R+GY+SPIRTPRG DI AACGQL
Sbjct: 336 LKGIPAKINLIPFNPWPGSDYECSDWERIEQFADIVNRAGYASPIRTPRGRDIFAACGQL 395

Query: 366 KSLSKRIPKVPRQEM 380
           KS S+R+ K  R+ +
Sbjct: 396 KSASERMRKKDREAV 410


>gi|23500991|ref|NP_697118.1| hypothetical protein BR0077 [Brucella suis 1330]
 gi|81753358|sp|Q8G374|RLMN_BRUSU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|23346851|gb|AAN29033.1| conserved hypothetical protein TIGR00048 [Brucella suis 1330]
          Length = 411

 Score =  531 bits (1367), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/382 (67%), Positives = 306/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  AL+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  G S SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGPSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPL  LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|114705378|ref|ZP_01438286.1| hypothetical protein FP2506_10576 [Fulvimarina pelagi HTCC2506]
 gi|114540163|gb|EAU43283.1| hypothetical protein FP2506_10576 [Fulvimarina pelagi HTCC2506]
          Length = 407

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 246/378 (65%), Positives = 305/378 (80%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ SLIGM REEL EAL  +G+P + VRMRT+Q+W W+YVRG+ DF  M+++S+++R+ L
Sbjct: 28  ERTSLIGMSREELGEALAAVGVPAKQVRMRTAQLWHWLYVRGVSDFAHMANVSKDLRNKL 87

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  ++I  PEIV E++S DGTRKW+ RFP R  G PVEIETVYIPE+ RGTLCVSSQVGC
Sbjct: 88  DAAYTIARPEIVTEQVSVDGTRKWVFRFPPRGAGRPVEIETVYIPEEGRGTLCVSSQVGC 147

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTC+FC+TGTQ+LVRNLTA EI+ QVLLAR  LGDFP  +   G ++PS GR +SN+VM
Sbjct: 148 TLTCTFCHTGTQRLVRNLTAGEIVSQVLLARERLGDFPDVDTPAGAIVPSEGRLVSNVVM 207

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  +L + SD  GLS SKRRITLSTSG VP I R GEE GVMLAISLH
Sbjct: 208 MGMGEPLYNFDNVATALGVISDGEGLSVSKRRITLSTSGVVPEIVRAGEETGVMLAISLH 267

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV+++LR+ LVPIN+KYPL  L++ACR+YPGLSNA+RITFEYVMLKG+NDS  DA NL++
Sbjct: 268 AVNDELRDELVPINKKYPLATLLEACRNYPGLSNAKRITFEYVMLKGVNDSMEDARNLVR 327

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD   I  F++ + ++GY+SPIRTPRG DI AACGQ
Sbjct: 328 MLKGIPAKINLIPFNPWPGSRYECSDWDQIERFADYVNQAGYASPIRTPRGRDIFAACGQ 387

Query: 365 LKSLSKRIPKVPRQEMQI 382
           LKS S+R+ K  R  +++
Sbjct: 388 LKSESERMRKKDRDRIEL 405


>gi|62289063|ref|YP_220856.1| hypothetical protein BruAb1_0077 [Brucella abortus bv. 1 str.
           9-941]
 gi|82699000|ref|YP_413574.1| hypothetical protein BAB1_0074 [Brucella melitensis biovar Abortus
           2308]
 gi|189023336|ref|YP_001934104.1| hypothetical protein BAbS19_I00700 [Brucella abortus S19]
 gi|237814550|ref|ZP_04593548.1| radical SAM enzyme, Cfr family [Brucella abortus str. 2308 A]
 gi|254690389|ref|ZP_05153643.1| hypothetical protein Babob68_09499 [Brucella abortus bv. 6 str.
           870]
 gi|254696506|ref|ZP_05158334.1| hypothetical protein Babob28_02005 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731419|ref|ZP_05189997.1| hypothetical protein Babob42_09524 [Brucella abortus bv. 4 str.
           292]
 gi|256258643|ref|ZP_05464179.1| hypothetical protein Babob9C_15111 [Brucella abortus bv. 9 str.
           C68]
 gi|260546356|ref|ZP_05822096.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
           NCTC 8038]
 gi|260755934|ref|ZP_05868282.1| radical SAM protein [Brucella abortus bv. 6 str. 870]
 gi|260759158|ref|ZP_05871506.1| radical SAM protein [Brucella abortus bv. 4 str. 292]
 gi|260760882|ref|ZP_05873225.1| radical SAM protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884958|ref|ZP_05896572.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
           bv. 9 str. C68]
 gi|297247480|ref|ZP_06931198.1| cfr family radical SAM enzyme [Brucella abortus bv. 5 str. B3196]
 gi|75497518|sp|Q57FT9|RLMN_BRUAB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123740915|sp|Q2YNV3|RLMN_BRUA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807157|sp|B2S7X6|RLMN_BRUA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|62195195|gb|AAX73495.1| conserved hypothetical protein TIGR00048 [Brucella abortus bv. 1
           str. 9-941]
 gi|82615101|emb|CAJ10030.1| Cytochrome c heme-binding site:Conserved hypothetical protein
           48:Radical SAM [Brucella melitensis biovar Abortus 2308]
 gi|189018908|gb|ACD71630.1| Conserved hypothetical protein 48 [Brucella abortus S19]
 gi|237789387|gb|EEP63597.1| radical SAM enzyme, Cfr family [Brucella abortus str. 2308 A]
 gi|260096463|gb|EEW80339.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
           NCTC 8038]
 gi|260669476|gb|EEX56416.1| radical SAM protein [Brucella abortus bv. 4 str. 292]
 gi|260671314|gb|EEX58135.1| radical SAM protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676042|gb|EEX62863.1| radical SAM protein [Brucella abortus bv. 6 str. 870]
 gi|260874486|gb|EEX81555.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
           bv. 9 str. C68]
 gi|297174649|gb|EFH33996.1| cfr family radical SAM enzyme [Brucella abortus bv. 5 str. B3196]
          Length = 411

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 256/382 (67%), Positives = 306/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  AL+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SK RITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKCRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPL  LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|49473706|ref|YP_031748.1| hypothetical protein BQ00190 [Bartonella quintana str. Toulouse]
 gi|81647409|sp|Q6G1C0|RLMN_BARQU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|49239209|emb|CAF25526.1| hypothetical protein BQ00190 [Bartonella quintana str. Toulouse]
          Length = 409

 Score =  528 bits (1359), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/376 (67%), Positives = 304/376 (80%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ + E+ EAL  IG+P++  RMR  Q+W W+YVRG+ +F  + +IS+ +R +L 
Sbjct: 28  KRSLIGLSQNEMAEALKAIGVPEQQTRMRVRQLWHWLYVRGVSNFDEILNISKPIREMLK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HFSI  PEIV E+IS DGTRKWLLRFPAR  G PVEIETVYIPE+ RGTLC+SSQVGC+
Sbjct: 88  NHFSIARPEIVGEQISKDGTRKWLLRFPAREDGRPVEIETVYIPEEGRGTLCLSSQVGCT 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFCYTGTQ LVRNLTAEEIL Q+L+AR  LGDFP     +G ++P  GRKI+NIVMM
Sbjct: 148 LTCSFCYTGTQVLVRNLTAEEILAQLLVARDCLGDFPNRTTPDGAIVPVEGRKITNIVMM 207

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLA+SLHA
Sbjct: 208 GMGEPLYNFEVVKKALLIASDGDGLSLSKRRITLSTSGVVPEIVRAGEEIGVMLAVSLHA 267

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V + LR++LVPIN+KYPL +LIDACR+YPGLSNA+RITFEYVMLKGINDS  DA  LI++
Sbjct: 268 VHDTLRDMLVPINKKYPLALLIDACRNYPGLSNAKRITFEYVMLKGINDSLDDAKRLIQL 327

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD + I  F++ + ++GY+SPIR PRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDILAACGQL 387

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS S+R+ K  R +++
Sbjct: 388 KSASERLRKSGRLQIE 403


>gi|163757380|ref|ZP_02164469.1| radical SAM enzyme, Cfr family protein [Hoeflea phototrophica
           DFL-43]
 gi|162284882|gb|EDQ35164.1| radical SAM enzyme, Cfr family protein [Hoeflea phototrophica
           DFL-43]
          Length = 410

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 251/382 (65%), Positives = 305/382 (79%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+GM R+EL  A+ + G+P+R  +MR +Q+W W+YVRG  DF  M  IS+++R  L+
Sbjct: 25  KPVLVGMDRDELIAAMAEAGVPERQRKMRVNQLWHWLYVRGSSDFADMHTISKDLRDKLD 84

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HFS+  PEIV+E+IS DGTRKWL+RFP R  G PVE+ETVYIPE+ RGTLC+SSQVGC+
Sbjct: 85  AHFSVARPEIVEEQISSDGTRKWLMRFPPRGAGRPVEVETVYIPEEGRGTLCISSQVGCT 144

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTC+FC+TGTQKLVRNLT EEIL Q+L+AR  LGDFP  +  +G ++P+ GRK++NIVMM
Sbjct: 145 LTCTFCHTGTQKLVRNLTPEEILAQLLVARDRLGDFPHKDTPQGAIVPTEGRKVTNIVMM 204

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NVKK+L IASD  GL+ S+RRITLSTSG VP I R G EIGVMLAISLHA
Sbjct: 205 GMGEPLYNFENVKKALLIASDGDGLALSRRRITLSTSGVVPEITRTGTEIGVMLAISLHA 264

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLKG+NDS  DA  L+++
Sbjct: 265 VRDELRDELVPINKKYPLKQLLDACRAYPGLSNARRITFEYVMLKGVNDSLSDAKELVRL 324

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD   I TF++ I  +GY+SPIRTPRG DILAACGQL
Sbjct: 325 LKGIPAKINLIPFNPWPGSAYECSDWDTIETFADFINANGYASPIRTPRGRDILAACGQL 384

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 385 KSESERMRKTERLALEAMMIAG 406


>gi|254504202|ref|ZP_05116353.1| radical SAM enzyme, Cfr family [Labrenzia alexandrii DFL-11]
 gi|222440273|gb|EEE46952.1| radical SAM enzyme, Cfr family [Labrenzia alexandrii DFL-11]
          Length = 421

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/375 (66%), Positives = 306/375 (81%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +LIG+ REEL EAL  IG+PQ+  RMR+SQ+W W+YVRG+ DF  MS+I++++R  L+
Sbjct: 39  KPTLIGLSREELGEALGTIGVPQKQWRMRSSQLWHWLYVRGVSDFAEMSNIAKDLRSKLD 98

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F+I  P+IV E+IS DGTRKWL +FP R  G PVE+ETVYIPE+ RGTLCVSSQVGC+
Sbjct: 99  EAFTIARPKIVSEQISVDGTRKWLFQFPPRGAGNPVEVETVYIPEEGRGTLCVSSQVGCT 158

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTC+FC+TGTQKLVRNLT+EEIL Q+L+AR  LGDFP     +G ++PS GR ++NIVMM
Sbjct: 159 LTCTFCHTGTQKLVRNLTSEEILSQILIARDRLGDFPDAHTPQGAIVPSEGRLVTNIVMM 218

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NVKK+L IASD  GLS SKRRITLSTSG VP I R G+EIG MLAISLHA
Sbjct: 219 GMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGDEIGCMLAISLHA 278

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++ R+ILVPIN+K+ ++ L+DACR+YPGLSNA+RITFEYVMLK INDS  DAL L+++
Sbjct: 279 VRDEDRDILVPINKKWNIKELLDACRNYPGLSNAKRITFEYVMLKDINDSNEDALELVRL 338

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG +Y CSD + I  F++ + R+GY+SPIRTPRG DI AACGQL
Sbjct: 339 LKGIPAKINLIPFNPWPGSQYACSDWERIEEFADIVNRAGYASPIRTPRGRDIFAACGQL 398

Query: 366 KSLSKRIPKVPRQEM 380
           KS S+R+ K  R  +
Sbjct: 399 KSTSERMRKKDRDAL 413


>gi|254472235|ref|ZP_05085635.1| radical SAM enzyme, Cfr family [Pseudovibrio sp. JE062]
 gi|211958518|gb|EEA93718.1| radical SAM enzyme, Cfr family [Pseudovibrio sp. JE062]
          Length = 420

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 247/379 (65%), Positives = 305/379 (80%), Gaps = 2/379 (0%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG+ REEL  AL  +G+P+R +RMR +Q+W W+YVRGI DF  MS++S+++R  L
Sbjct: 34  EKPSLIGLSREELGNALAAVGVPERQIRMRVNQLWHWLYVRGISDFSKMSNVSKDLRTKL 93

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F+I  PEIV E+IS DGTRKWL RFP+R  G PVE+ETVYIPE+ RGTLC+SSQVGC
Sbjct: 94  DFAFTIARPEIVTEQISVDGTRKWLFRFPSRGAGKPVEVETVYIPEEDRGTLCISSQVGC 153

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNI 182
           +LTC+FC+TGTQK+VRNLTAEEIL Q++LA+  L DFP  +  EG +  S    R+I+NI
Sbjct: 154 TLTCTFCHTGTQKMVRNLTAEEILAQLMLAKDRLNDFPDADAPEGGLDASTSNRRRITNI 213

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL NF+NVKK+L IASD  GLS SKRRITLSTSG  P IAR G+EIG MLAIS
Sbjct: 214 VMMGMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVTPEIARTGDEIGCMLAIS 273

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHAV+++LRN+LVPIN+KY LE L+ ACR YPGLSNA+RITFEYVMLKG+NDS  DA  L
Sbjct: 274 LHAVNDELRNVLVPINKKYNLETLLQACRDYPGLSNAKRITFEYVMLKGVNDSLEDAKKL 333

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +++LKGIPAKINL+PFNPWPG  Y CSD + I  F++ + R+GY+SPIRTPRG DI AAC
Sbjct: 334 VQLLKGIPAKINLLPFNPWPGSPYECSDWEQIEEFADVVNRAGYASPIRTPRGRDIFAAC 393

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQLKS S+R+ K  R+ ++
Sbjct: 394 GQLKSASERLRKSEREALE 412


>gi|222150075|ref|YP_002551032.1| Fe-S-cluster redox protein [Agrobacterium vitis S4]
 gi|254807147|sp|B9JU97|RLMN_AGRVS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|221737057|gb|ACM38020.1| Fe-S-cluster redox protein [Agrobacterium vitis S4]
          Length = 410

 Score =  525 bits (1351), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/387 (65%), Positives = 308/387 (79%), Gaps = 3/387 (0%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M    K +LIG  REE+ E L +IG+  + VRMR +Q+W WIYVRG+ DF  M+++++++
Sbjct: 19  MTGATKPTLIGQTREEMGEMLREIGVADKQVRMRVAQLWNWIYVRGVSDFDQMTNVAKDM 78

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L  HF+I  PEIV+E++S DGTRKWLLR+P R  G PVE+E VYIPE+ RGTLCVSS
Sbjct: 79  REKLKAHFTIARPEIVEEQVSNDGTRKWLLRYPPRGAGRPVEVECVYIPEEGRGTLCVSS 138

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+LTC+FC+TGTQKLVRNLTAEE+L Q+LLAR  LGDFP  +   G ++P+ GRKI+
Sbjct: 139 QVGCTLTCTFCHTGTQKLVRNLTAEEVLSQLLLARDRLGDFPDRDAPVGAMVPNEGRKIT 198

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLA
Sbjct: 199 NMVMMGMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLA 258

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHAV ++LR++LVPIN+KYPL+ LI+ACR+YPGLSNARRITFEYVMLK +NDS  DA 
Sbjct: 259 ISLHAVRDELRDLLVPINKKYPLKDLIEACRNYPGLSNARRITFEYVMLKDVNDSLEDAK 318

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI++LKGIP+KINLIPFNPWPG  Y CSD   I+ F++ I  +GY+SPIRTPRG DILA
Sbjct: 319 GLIQLLKGIPSKINLIPFNPWPGTNYQCSDWDQIMKFADFINSAGYASPIRTPRGRDILA 378

Query: 361 ACGQLKSLSKRIPKVPR---QEMQITG 384
           ACGQLKS S+R+ K  R   + M I G
Sbjct: 379 ACGQLKSESERMRKTERLAYEAMMIVG 405


>gi|319403510|emb|CBI77089.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 409

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/376 (66%), Positives = 302/376 (80%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  LIG+  +E+ +AL  IG+P+   +MR  QIW W+YVRG+  F  M +IS+ +R +L 
Sbjct: 28  KLPLIGLSHDEIAQALQAIGVPEHQTQMRVRQIWHWLYVRGVSHFDEMLNISKPMREMLK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HFSI  PEIV E+IS DGTRKWLLRFPA   G PVEIETVYIPE++RGTLC+SSQVGC+
Sbjct: 88  EHFSIARPEIVAEQISQDGTRKWLLRFPASGAGKPVEIETVYIPEEARGTLCISSQVGCT 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT EEIL+Q+L+AR  LGDFP  +  +G +IP  GRKI+N+VMM
Sbjct: 148 LTCSFCHTGTQKLVRNLTVEEILVQLLVARDCLGDFPDKKTPDGAIIPIEGRKITNVVMM 207

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG +P I R G+EIGVMLAISLHA
Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLHA 267

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V + LR+ILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS  DA  LI++
Sbjct: 268 VHDTLRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDARKLIQL 327

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I ++GY+SPIR PRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADIINKAGYASPIRMPRGRDILAACGQL 387

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS SKR+ K  R  ++
Sbjct: 388 KSASKRLAKSERIRLE 403


>gi|121601967|ref|YP_989610.1| radical SAM protein [Bartonella bacilliformis KC583]
 gi|205829667|sp|A1UUF7|RLMN_BARBK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120614144|gb|ABM44745.1| radical SAM enzyme, Cfr family [Bartonella bacilliformis KC583]
          Length = 414

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 252/377 (66%), Positives = 300/377 (79%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           + +SLIG+  +E+ +AL  IG+P+   RMR  Q+W W YVRG+  F  M +IS+ +R +L
Sbjct: 28  QSQSLIGLSHDEMVQALRSIGVPEHQTRMRVRQLWHWFYVRGVSSFDEMFNISKPMREML 87

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +FSI YPEIV+E+IS DGT KWLLRFPAR  G PVEIETVYIP + RGTLCVSSQVGC
Sbjct: 88  KDNFSIAYPEIVEEQISKDGTYKWLLRFPARGAGKPVEIETVYIPGEGRGTLCVSSQVGC 147

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFCYTGTQKLVRNLTAEEILLQ+L AR+ LGDFPG +  +   +    RKI+NIVM
Sbjct: 148 TLTCSFCYTGTQKLVRNLTAEEILLQLLFARNRLGDFPGKDKPDHSSLSEERRKITNIVM 207

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLA+SLH
Sbjct: 208 MGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRAGEEIGVMLAVSLH 267

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV + LR++LVPIN+KYPL ML++ACR+YPGLSNA+RITFEYVMLK +NDS  DA  LIK
Sbjct: 268 AVCDSLRDVLVPINKKYPLSMLMEACRNYPGLSNAKRITFEYVMLKDVNDSLDDAKKLIK 327

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I R+GY+SPIR PRG DILAACG 
Sbjct: 328 LLKGIPAKINLIPFNPWPGSHYECSDWEQIERFADVINRAGYASPIRMPRGRDILAACGN 387

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS S+R+ K  R +++
Sbjct: 388 LKSTSERLRKSERLQLE 404


>gi|163867325|ref|YP_001608519.1| hypothetical protein Btr_0020 [Bartonella tribocorum CIP 105476]
 gi|205829668|sp|A9IL44|RLMN_BART1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|161016966|emb|CAK00524.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 408

 Score =  521 bits (1343), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/376 (66%), Positives = 304/376 (80%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ ++E+ +AL  +G+P+R  RMR  Q+W W+YVRG+ +F  M +IS+ ++  L 
Sbjct: 28  KLSLIGLSQDEIVQALKTVGVPERQTRMRARQLWHWLYVRGVSNFDEMLNISKVMQETLK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HFSI  PEIV E+IS DGTRKWLLRFPAR  G PVEIETVYIPE+ RGTLC+SSQVGC+
Sbjct: 88  HHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIPEEGRGTLCLSSQVGCT 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ LVRNLTAEEIL Q+L+AR  LGDFP     +G ++P  GRK++NIVMM
Sbjct: 148 LTCSFCHTGTQMLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPVEGRKVTNIVMM 207

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N++ VKK+L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISLHA
Sbjct: 208 GMGEPLYNYEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEEIGVMLAISLHA 267

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V + +R++LVPIN+KYPL +L+DACR+YPGLSNA+RITFEYVMLK INDS  DA  LI++
Sbjct: 268 VHDTVRDMLVPINKKYPLTLLMDACRNYPGLSNAKRITFEYVMLKDINDSLDDAKRLIQL 327

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD + I  F++ + ++GY+SPIRTPRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRTPRGRDILAACGQL 387

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS S+R+ K  R +++
Sbjct: 388 KSASERLRKSERLKLE 403


>gi|319406423|emb|CBI80063.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 409

 Score =  521 bits (1341), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/376 (66%), Positives = 300/376 (79%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  LIG+  +E+ +AL  IG+P+   +MR  Q+W W+YVRGI  F  M +IS+ +R +L 
Sbjct: 28  KLPLIGLSHDEMAQALQAIGVPEHQTQMRVRQLWHWLYVRGISHFDEMLNISKPMREMLK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HFSI  PEIV E+IS DGTRKWLLRFPA   G PVE+ETVYIPE+ RGTLC+SSQVGC+
Sbjct: 88  EHFSIARPEIVAEQISQDGTRKWLLRFPASGAGKPVEVETVYIPEEGRGTLCISSQVGCT 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT EEIL+Q+L+AR  LGDFP  +  +  +IP  GRKI+NIVMM
Sbjct: 148 LTCSFCHTGTQKLVRNLTVEEILVQLLVARDCLGDFPDKKTPDSAIIPIEGRKITNIVMM 207

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVVPRIIRTGKEIGVMLAISLHA 267

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V + LR+ILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS  DA  LI++
Sbjct: 268 VHDALRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDARRLIQL 327

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I ++GY+SPIR PRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEHIERFADIINKAGYASPIRVPRGRDILAACGQL 387

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS SKR+ K  R  ++
Sbjct: 388 KSASKRLAKSERMRLE 403


>gi|49474851|ref|YP_032892.1| hypothetical protein BH00200 [Bartonella henselae str. Houston-1]
 gi|81648360|sp|Q6G592|RLMN_BARHE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|49237656|emb|CAF26836.1| hypothetical protein BH00200 [Bartonella henselae str. Houston-1]
          Length = 408

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/376 (66%), Positives = 301/376 (80%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ ++E+ EAL  IGIP+R  RMR  Q+W W+YVRG+ +F  M +IS+ ++ +  
Sbjct: 28  KLSLIGLSQDEMAEALKAIGIPERQTRMRVRQLWHWLYVRGVSNFDEMLNISKPMQEIFK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HFSI  PEI  E+IS DGTRKWLLRFP R  G PVEIETVYIPE+ RGTLC+SSQVGC+
Sbjct: 88  KHFSIARPEIAGEQISKDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCLSSQVGCT 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFCYTGTQ LVRNLTAEEIL Q+L+AR  LGDFP     +G ++P  GRKI+NIVMM
Sbjct: 148 LTCSFCYTGTQVLVRNLTAEEILAQLLVARDCLGDFPDRNTPDGAIVPVEGRKITNIVMM 207

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP + R GEEIGVMLAISLHA
Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVVPGMIRTGEEIGVMLAISLHA 267

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V++ LR++LVPIN+KYPL +L+DACR YPGLSNA+RITFEYVMLK +NDS  DA  L+++
Sbjct: 268 VNDTLRDMLVPINKKYPLALLMDACRQYPGLSNAKRITFEYVMLKDVNDSLDDAKRLVQL 327

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD + I  F++ + ++GY+SPIR PRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDILAACGQL 387

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS S+R+ K  R  ++
Sbjct: 388 KSASERLRKSERLHLE 403


>gi|240849701|ref|YP_002971089.1| hypothetical protein Bgr_00190 [Bartonella grahamii as4aup]
 gi|240266824|gb|ACS50412.1| hypothetical protein Bgr_00190 [Bartonella grahamii as4aup]
          Length = 408

 Score =  517 bits (1332), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/376 (66%), Positives = 301/376 (80%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ ++E+ +AL  +G+P+   RMR  Q+W W+YVRG+ +F  M +IS+ ++  L 
Sbjct: 28  KLSLIGLSQDEMVQALKTVGVPEHQTRMRVRQLWHWLYVRGVSNFDEMLNISKAMQETLK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HFSI  PEIV E+IS DGTRKWLLRFPAR  G PVEIETVYIPE+ RGTLC+SSQVGC+
Sbjct: 88  CHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIPEEGRGTLCLSSQVGCT 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ LVRNLTAEEIL Q+L+AR  LGDFP     +G ++P  GRKI+NIVMM
Sbjct: 148 LTCSFCHTGTQMLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPIEGRKITNIVMM 207

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISLHA
Sbjct: 208 GMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEEIGVMLAISLHA 267

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V + LR++LVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK INDS  DA  LIK+
Sbjct: 268 VHDTLRDMLVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKDINDSLDDAKRLIKL 327

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD + I  F++ + ++GY+SPIR PRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDILAACGQL 387

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS S+R+ K  R  ++
Sbjct: 388 KSASERLRKSERLRLE 403


>gi|86359510|ref|YP_471402.1| hypothetical protein RHE_CH03930 [Rhizobium etli CFN 42]
 gi|86283612|gb|ABC92675.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 360

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/345 (70%), Positives = 288/345 (83%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
           MR SQ+W WIYVRG+ DF  M+++++++R +L QHF+I  PEIV+E++S DGTRKWLLRF
Sbjct: 1   MRVSQLWNWIYVRGVSDFDHMTNVAKDMREMLKQHFTIARPEIVEEQVSNDGTRKWLLRF 60

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
           PAR  G PVEIE VYIPE+ RGTLC+SSQVGC+LTCSFC+TGTQ+LVRNLTAEEIL Q+L
Sbjct: 61  PARGAGRPVEIEAVYIPEEGRGTLCISSQVGCTLTCSFCHTGTQRLVRNLTAEEILSQLL 120

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           LAR  LGDFP  E  +G ++P+ GRK+SNIVMMGMGEPL NFD VK++L IA+D  GLS 
Sbjct: 121 LARDRLGDFPDREAPQGTIMPAEGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSL 180

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           SKRR+TLSTSG VP I R GEEIGVMLAISLHAV +DLR+ILVPIN+KYPL+ LIDAC+ 
Sbjct: 181 SKRRVTLSTSGVVPEIFRTGEEIGVMLAISLHAVRDDLRDILVPINKKYPLKELIDACKA 240

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           YPGLSNARRITFEYVMLK +NDS  DA  LIK+LKG+PAKINLIPFNPWPG  Y CSD +
Sbjct: 241 YPGLSNARRITFEYVMLKDVNDSLEDAKGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWE 300

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
            I  F++ I  +GY+SPIRTPRG DILAACGQLKS S+R+ K  R
Sbjct: 301 QIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTER 345


>gi|319404936|emb|CBI78538.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 409

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/376 (66%), Positives = 297/376 (78%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  LIG+ ++E+ +AL  IG+P+   RMR  Q+W W+YVRG+  F  M +IS+ +R +L 
Sbjct: 28  KLPLIGLSQDEMAQALRIIGVPEHQTRMRVHQLWHWLYVRGVSHFDEMLNISKPMRKMLK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HFSI  PEIV E+IS DGTRKWLLRFPA     PVEIE VYIPE+ RGTLCVSSQVGC+
Sbjct: 88  DHFSIARPEIVAEQISQDGTRKWLLRFPASGTERPVEIEMVYIPEEGRGTLCVSSQVGCT 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTAEEIL+Q+L+AR  LGDFP      G +IP  GRKI+NIVMM
Sbjct: 148 LTCSFCHTGTQKLVRNLTAEEILVQLLVARDCLGDFPDKNTPNGAIIPIEGRKITNIVMM 207

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  G S SKRRITLSTSG +P I R G+EIGVMLAISLHA
Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGFSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLHA 267

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V + LR+ILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS  DA  LI++
Sbjct: 268 VHDTLRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDAKKLIQL 327

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I ++GY+SPIR PRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADLINKAGYASPIRMPRGRDILAACGQL 387

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS SKR+ K  R  ++
Sbjct: 388 KSASKRLCKSERMRLE 403


>gi|319898214|ref|YP_004158307.1| Fe-S containing enzyme [Bartonella clarridgeiae 73]
 gi|319402178|emb|CBI75709.1| putative Fe-S containing enzyme [Bartonella clarridgeiae 73]
          Length = 411

 Score =  511 bits (1317), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/376 (65%), Positives = 299/376 (79%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R+E+ +AL  IG+P+    MR  Q+W W+YVRG+ +F  M +IS+ +R +  
Sbjct: 28  KLSLIGLSRDEMTQALQVIGVPEHQKGMRVRQLWHWLYVRGVSNFDEMLNISKPMREMFK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HFSI  P+IV E+IS DGTRKWLL+FPA     PVEIE VYIPE+ RGTLC+SSQVGC+
Sbjct: 88  DHFSIARPKIVAEQISQDGTRKWLLQFPASGTERPVEIEMVYIPEERRGTLCISSQVGCT 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT EEIL+Q+L+AR  LGDFP     +G +IP  GRKI+NIVMM
Sbjct: 148 LTCSFCHTGTQKLVRNLTTEEILVQLLVARDCLGDFPDKNIPDGAIIPIEGRKITNIVMM 207

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG +P I R G+EIGVMLAISLHA
Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLHA 267

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V + LRNILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS  DA  L+++
Sbjct: 268 VHDKLRNILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLGDAKRLVQL 327

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD + I  F++ + ++GY+SPIR PRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADIVNKAGYASPIRMPRGRDILAACGQL 387

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS S+R+ K  R E++
Sbjct: 388 KSASERLRKSERMELE 403


>gi|319407894|emb|CBI81546.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 405

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/372 (65%), Positives = 295/372 (79%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+  +E+ +AL +IG+P+   RMR  Q+W W+YVRG+  F  M +I++ +R +L 
Sbjct: 24  KLSLIGLSHDEMVQALEEIGVPKHQTRMRVRQLWHWLYVRGVSHFDEMLNIAKPMRRMLQ 83

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HFSI  PEIV+E+ S DGT KWLLRFPAR  G PVEIETVYIPE+ RGTLC+SSQVGC+
Sbjct: 84  NHFSIARPEIVEEQTSNDGTCKWLLRFPARGAGKPVEIETVYIPEEGRGTLCISSQVGCT 143

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ LVRNLTAEEIL Q+L+AR  LGDFP     +G  +   GRK++NIVMM
Sbjct: 144 LTCSFCHTGTQTLVRNLTAEEILAQLLVARDRLGDFPEKNTPDGAAVSIEGRKVTNIVMM 203

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 204 GMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRAGKEIGVMLAISLHA 263

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V + LR+ILVPIN+KYPL +L+DACR+YPGLSNA+RITFEYVMLK +NDS  DA  L+++
Sbjct: 264 VHDALRDILVPINKKYPLTLLMDACRNYPGLSNAKRITFEYVMLKDVNDSLDDAKQLVQL 323

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFN WPG  Y CSD + I  F++ I ++GY+SP+R PRG DILAACGQL
Sbjct: 324 LKGIPAKINLIPFNSWPGSHYQCSDWEQIERFADVINQAGYASPVRMPRGRDILAACGQL 383

Query: 366 KSLSKRIPKVPR 377
           KS S+R+ K  R
Sbjct: 384 KSASERLRKSER 395


>gi|304392673|ref|ZP_07374613.1| radical SAM enzyme, Cfr family [Ahrensia sp. R2A130]
 gi|303295303|gb|EFL89663.1| radical SAM enzyme, Cfr family [Ahrensia sp. R2A130]
          Length = 423

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 238/387 (61%), Positives = 300/387 (77%), Gaps = 7/387 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIGM R ++  AL++ GIPQ+  RMR SQ+W+WIY  G  DF  M++I++++R  L
Sbjct: 26  EKPSLIGMDRADMAAALIEAGIPQKQARMRASQLWQWIYWYGHTDFAAMTNIAKDLRAKL 85

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F++  PE+V+E IS DGTRKWL RFPAR  G PVE+ETVYIPE  RGTLC+SSQVGC
Sbjct: 86  ADNFTLERPELVEELISTDGTRKWLFRFPARGAGAPVEVETVYIPESDRGTLCISSQVGC 145

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-------GCEDIEGMVIPSVGR 177
           +LTC+FC+TGTQKLVRNLTAEEIL+Q+++AR  LGDFP         ++ E   IP   R
Sbjct: 146 TLTCTFCHTGTQKLVRNLTAEEILMQLMVARDRLGDFPDKPPVKAAAKNEEEAFIPDGDR 205

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
           K+SNIVMMGMGEPL NF++VKK+L IASD+ GLS SKRRITLSTSG VP I R G+EIG 
Sbjct: 206 KVSNIVMMGMGEPLYNFEHVKKALLIASDNEGLSLSKRRITLSTSGVVPGIERTGDEIGC 265

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LAISLHA +++LR++LVPIN+KYP+  L+DACR+YPG SN++RITFEYVML G+NDS  
Sbjct: 266 GLAISLHATNDELRDVLVPINKKYPIAKLLDACRNYPGASNSKRITFEYVMLDGVNDSLA 325

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
           DA  L+++LKGIPAKINLIPFNPWPG +Y CS  + I  F+E +  +GY+SP+RTPRG D
Sbjct: 326 DAKELVRLLKGIPAKINLIPFNPWPGSQYECSSWEKIEAFAEFVNANGYASPVRTPRGRD 385

Query: 358 ILAACGQLKSLSKRIPKVPRQEMQITG 384
           I AACGQLKS S+R+ K  R+  +   
Sbjct: 386 IFAACGQLKSESERMRKKDRETAEFAA 412


>gi|90421104|ref|ZP_01229006.1| radical SAM enzyme, coproporphyrinogen III oxidase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334596|gb|EAS48376.1| radical SAM enzyme, coproporphyrinogen III oxidase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 413

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 230/377 (61%), Positives = 298/377 (79%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SL+G+ R  L EAL  +G+P + +RMR +Q+W W+YVRG+ DF  M++++  +R  L
Sbjct: 27  EKPSLVGLDRAALGEALSAVGVPDKQIRMRVAQLWHWLYVRGVADFSQMANVAGTLRQAL 86

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++ ++I  PE+VDE+IS DGTRKWL RFP R  G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 87  HEAYTIARPEVVDEQISVDGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 146

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTC+FC+TGTQ+LVRNL  +EI+ Q+L AR  LGD P      G ++P+ GR ++N+V+
Sbjct: 147 TLTCTFCHTGTQRLVRNLLPDEIVGQILAARERLGDLPDAATPAGAIVPNGGRLVTNVVL 206

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N+DNV++++++ASD  GLS SKRRITLSTSG VP+I + GEE+GV LAISLH
Sbjct: 207 MGMGEPLYNYDNVRQAMAVASDGEGLSLSKRRITLSTSGVVPSIVKAGEEMGVSLAISLH 266

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLK +NDS  DA  L++
Sbjct: 267 AVRDELRDELVPINKKYPLKDLLDACRAYPGLSNARRITFEYVMLKDVNDSMADAKELVR 326

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           IL+GIPAKINLIPFNPWPG  Y CSD   I  F++ + ++GY+SPIRTPRG DI AACGQ
Sbjct: 327 ILRGIPAKINLIPFNPWPGSAYECSDWDQIERFADYVNQAGYASPIRTPRGRDIFAACGQ 386

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS S+R+ K  R  ++
Sbjct: 387 LKSESERLKKSARDRLE 403


>gi|300024847|ref|YP_003757458.1| radical SAM enzyme, Cfr family [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526668|gb|ADJ25137.1| radical SAM enzyme, Cfr family [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 401

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/376 (60%), Positives = 289/376 (76%), Gaps = 2/376 (0%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SL G+ R  L+EAL   G+P++ + MR +Q+W WIYVRGI  F+ M+D+S+++R  L
Sbjct: 20  EKRSLAGLTRARLKEALAAGGVPEKQLNMRVNQLWSWIYVRGITRFEDMTDVSKDLRRQL 79

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQVG 123
           +  +++  PEI+ E+IS DGTRKWLLR   R     P E+ETVYIPE  RGTLC+SSQVG
Sbjct: 80  DAIYTLDRPEIISEQISVDGTRKWLLRLAKRGHEARPPEVETVYIPESDRGTLCISSQVG 139

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED-IEGMVIPSVGRKISNI 182
           C+LTCSFC+TGTQ+LVRNL A+EI+ Q++LAR  +GD+PG +   +G ++P+  RKI+N+
Sbjct: 140 CTLTCSFCHTGTQRLVRNLEAQEIVGQIMLARDRIGDWPGAKGPDDGRLLPASERKITNV 199

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V+MGMGEPL NFDNVK ++ +ASD  GL+ SKRRITLSTSG VP I R GEE   MLAIS
Sbjct: 200 VLMGMGEPLYNFDNVKAAMEVASDGDGLALSKRRITLSTSGVVPEIPRWGEEADTMLAIS 259

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++ LR+ LVPINRKYP+  L+ ACR YPGLSNARRITFEYVMLKG+NDS  +A  L
Sbjct: 260 LHATNDALRDELVPINRKYPIAELMQACRDYPGLSNARRITFEYVMLKGVNDSLAEARAL 319

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K+L GIPAKINLIPFNPWP   Y CSD + I  F+E + R+GY+SP+RTPRG DILAAC
Sbjct: 320 VKLLAGIPAKINLIPFNPWPNTRYECSDWETIERFAEVVNRAGYASPVRTPRGRDILAAC 379

Query: 363 GQLKSLSKRIPKVPRQ 378
           GQL+S S R+    R+
Sbjct: 380 GQLRSESLRLSASERR 395


>gi|312114859|ref|YP_004012455.1| radical SAM enzyme, Cfr family [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219988|gb|ADP71356.1| radical SAM enzyme, Cfr family [Rhodomicrobium vannielii ATCC
           17100]
          Length = 412

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/371 (61%), Positives = 284/371 (76%), Gaps = 6/371 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SL GM R EL  AL + G+P    +MR +Q+W W Y RG  DF  +++I++ +R  L+
Sbjct: 29  KPSLAGMTRPELMAALAEAGVPANQAKMRAAQLWNWTYARGATDFMALTNIAKSLRAELD 88

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             F++  PEI  E+IS DGTRKWLLR  P+     P EIETVYIPE  RGTLC+SSQVGC
Sbjct: 89  ARFTLARPEIAAEQISEDGTRKWLLRLAPSHPAERPPEIETVYIPEPDRGTLCISSQVGC 148

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP---GCEDIEGMVIPSVGRKISN 181
           +L CSFC+TGTQ+LVRNLTA EI+ Q+L+AR  +GD+P   G  D  G  IP   RKI+N
Sbjct: 149 TLNCSFCHTGTQRLVRNLTAAEIVGQILVARDRVGDWPDADGPADRHG--IPESERKITN 206

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV+MGMGEPL NF+NVK ++ +A+D+  LSFSKRR+TLSTSG VP + R GEE+GVMLAI
Sbjct: 207 IVLMGMGEPLYNFENVKAAVGLATDADALSFSKRRLTLSTSGVVPMMHRAGEEMGVMLAI 266

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV +DLR+ LVPINRKYPL+ L+ ACR YPGLSNARR+TFEYVMLKG+NDS  +A  
Sbjct: 267 SLHAVRDDLRDELVPINRKYPLKELLAACRAYPGLSNARRMTFEYVMLKGVNDSVAEAKE 326

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++LKGIP+KINLIPFNPWPG  Y CSD   I  F++ + R+GY+SPIRTPRG DI+AA
Sbjct: 327 LVRLLKGIPSKINLIPFNPWPGTAYECSDWAQIERFADVVNRAGYASPIRTPRGRDIMAA 386

Query: 362 CGQLKSLSKRI 372
           CGQLKS S+++
Sbjct: 387 CGQLKSASEKL 397


>gi|209883455|ref|YP_002287312.1| radical SAM enzyme, Cfr family [Oligotropha carboxidovorans OM5]
 gi|209871651|gb|ACI91447.1| radical SAM enzyme, Cfr family [Oligotropha carboxidovorans OM5]
          Length = 404

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/368 (61%), Positives = 283/368 (76%), Gaps = 6/368 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG+ R+EL   L ++G+  +  +MR  Q+W W+YVRG R F+ MS++S+++R  L
Sbjct: 28  EKPSLIGLSRDELMARLGELGVADKQRKMRAQQLWHWMYVRGARSFEEMSNVSKDMRAQL 87

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             HF++  PE+V E++S DGTRKWLLR P   +G   E+E VYIPE  RGTLCVSSQVGC
Sbjct: 88  AAHFTVDRPEVVAEQVSNDGTRKWLLRMPGDGVGRAHEVECVYIPETDRGTLCVSSQVGC 147

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ QV++AR  L D+   E       P+  R ++N+VM
Sbjct: 148 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWVDRE------TPNGNRLVTNVVM 201

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I SD  G+  S+RRITLSTSG VPNIAR+GEE GVMLAISLH
Sbjct: 202 MGMGEPLYNFDAVRDALKIMSDGEGIGLSRRRITLSTSGVVPNIARIGEETGVMLAISLH 261

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LRN LVP+NRKYP+  L+DACR+YPG SNARRITFEYVMLKG+NDS  DA  L+K
Sbjct: 262 AVRDELRNELVPLNRKYPIAQLLDACRNYPGASNARRITFEYVMLKGVNDSLDDAKLLVK 321

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD + I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 322 LLKGIPAKINLIPFNPWPGSVYECSDWEQIEQFSEYVFNAGYSSPVRTPRGRDILAACGQ 381

Query: 365 LKSLSKRI 372
           LKS ++++
Sbjct: 382 LKSETEKL 389


>gi|158422376|ref|YP_001523668.1| hypothetical protein AZC_0752 [Azorhizobium caulinodans ORS 571]
 gi|205829661|sp|A8IQ73|RLMN_AZOC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|158329265|dbj|BAF86750.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 406

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/367 (60%), Positives = 287/367 (78%), Gaps = 2/367 (0%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           SL G+ RE+L  AL  IG+P+R  +MR +Q+W WIY+RG  DF  M+++S+ +R  L +H
Sbjct: 24  SLAGLDREKLGLALAAIGVPERERKMRVNQLWHWIYLRGATDFAEMTNVSKTLRTQLAEH 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +S+  PEIV E++S DGTRKWLLR PA   G  P E+E VYIPE+ RGTLCVSSQVGC+L
Sbjct: 84  YSLARPEIVVEQVSQDGTRKWLLRLPAETPGERPHEVEAVYIPERDRGTLCVSSQVGCTL 143

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVMM 185
            C+FC+TGTQ+LVRNLTA EI+ QVL+AR  LGD+PG E   G  +P+ G R ++NIV M
Sbjct: 144 NCAFCHTGTQRLVRNLTAAEIVAQVLVARDRLGDYPGRERAVGPGLPTEGDRLVTNIVFM 203

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL  +D+V +++ I +D  GL   KRRIT+STSG VP I ++G E+G MLAISLHA
Sbjct: 204 GMGEPLYAYDSVAEAIEILADGDGLGLGKRRITVSTSGVVPEIEKLGREVGPMLAISLHA 263

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V +DLR++LVPIN+KYP+  L++ACR YP  SNA+RITFEYVMLKG+NDSP DA  L+K+
Sbjct: 264 VRDDLRDVLVPINKKYPIAELMEACRTYPAASNAKRITFEYVMLKGVNDSPADARALVKL 323

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+PAKINLIPFNPWPG +Y CSD + I  FS+ + R+GY+SP+RTPRG DILAACGQL
Sbjct: 324 LEGVPAKINLIPFNPWPGTKYECSDWETIEKFSDIVFRAGYASPVRTPRGRDILAACGQL 383

Query: 366 KSLSKRI 372
           KS ++++
Sbjct: 384 KSETEKL 390


>gi|296446886|ref|ZP_06888822.1| radical SAM enzyme, Cfr family [Methylosinus trichosporium OB3b]
 gi|296255561|gb|EFH02652.1| radical SAM enzyme, Cfr family [Methylosinus trichosporium OB3b]
          Length = 386

 Score =  468 bits (1204), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/370 (61%), Positives = 276/370 (74%), Gaps = 3/370 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SL G  R EL EAL  I  P+R +RMR +Q+W WIY RG RDF  MS++S+ VR  L 
Sbjct: 8   KPSLAGATRAELAEALRAIDTPEREIRMRVAQLWHWIYFRGARDFADMSNVSKIVRGKLA 67

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + F +  PE+V E++S DGTRKWLLR  P        EIE VYIPE  RGTLCVSSQVGC
Sbjct: 68  ERFGLALPEVVAEQVSTDGTRKWLLRLDPVDAADKGAEIECVYIPESDRGTLCVSSQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNI 182
           +L CSFC+TGTQKLVRNL+  EI+ Q+L+AR  LGDFPG E     ++PS    R +SNI
Sbjct: 128 TLNCSFCHTGTQKLVRNLSTREIIAQLLVARMRLGDFPGLEPPTDGLVPSGPDVRAVSNI 187

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N + V+ ++ I SD  GLS SKRRIT+STSG VP I R+G E G MLAIS
Sbjct: 188 VFMGMGEPLYNLEQVENAIEILSDGDGLSLSKRRITVSTSGVVPQIERLGAECGPMLAIS 247

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHAV ++LRN LVP+N+KYP+  L+DACR YPG SNARRITFEYVMLKG+NDSP +A  L
Sbjct: 248 LHAVRDELRNELVPLNKKYPIRQLLDACRDYPGASNARRITFEYVMLKGVNDSPAEAREL 307

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +++LKGIPAKINLIPFNPWPG  Y CSD + I  FS+ +  +GY+SP+RTPRG DILAAC
Sbjct: 308 VRLLKGIPAKINLIPFNPWPGAPYECSDWETIERFSDIVFNAGYASPVRTPRGRDILAAC 367

Query: 363 GQLKSLSKRI 372
           GQLKS ++++
Sbjct: 368 GQLKSETEKL 377


>gi|115522068|ref|YP_778979.1| radical SAM protein [Rhodopseudomonas palustris BisA53]
 gi|122298191|sp|Q07VN5|RLMN_RHOP5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|115516015|gb|ABJ03999.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris BisA53]
          Length = 403

 Score =  468 bits (1203), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/385 (60%), Positives = 283/385 (73%), Gaps = 14/385 (3%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L K SLIG+ R EL E L  IG+     +MR  Q+W WIYVRG  DF  M+ IS+E+R  
Sbjct: 20  LAKPSLIGLSRPELMERLGGIGVAAAQRKMRAQQLWHWIYVRGATDFAQMTSISKELRAQ 79

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-EIETVYIPEKSRGTLCVSSQV 122
           L +HF++  PE+V E+IS DGTRKWLLR P+   G    E+E VYIPE  RGTLCVSSQV
Sbjct: 80  LAEHFTVDRPEVVTEQISNDGTRKWLLRLPSGQAGERAHEVECVYIPETDRGTLCVSSQV 139

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV------G 176
           GC+L CSFC+TGTQKLVRNLTA EI+ QV++A+  LGD+P       M + S        
Sbjct: 140 GCTLNCSFCHTGTQKLVRNLTAGEIVGQVMVAKDRLGDWP-------MAVASTQDAGENN 192

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           R I+N+VMMGMGEPL NF+ V+ +L I SD+ G+  S+RRITLSTSG VPNI R G+EIG
Sbjct: 193 RLITNVVMMGMGEPLYNFEAVRDALLIVSDNEGIGLSRRRITLSTSGVVPNIFRTGDEIG 252

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           VMLAISLHAV ++LRN LVP+N+KYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS 
Sbjct: 253 VMLAISLHAVRDELRNELVPLNKKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSL 312

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
            DA  L+K+LKG+PAKINLIPFNPWPG  Y CSD   I  FSE I  +GYSSP+RTPRG 
Sbjct: 313 DDAKLLVKLLKGVPAKINLIPFNPWPGSAYQCSDWDQIEKFSEYIFNAGYSSPVRTPRGR 372

Query: 357 DILAACGQLKSLSKRIPKVPRQEMQ 381
           DILAACGQLKS ++++    R  ++
Sbjct: 373 DILAACGQLKSETEKLSARERDALR 397


>gi|182677752|ref|YP_001831898.1| radical SAM protein [Beijerinckia indica subsp. indica ATCC 9039]
 gi|205829669|sp|B2IGZ5|RLMN_BEII9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|182633635|gb|ACB94409.1| radical SAM enzyme, Cfr family [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 391

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/369 (60%), Positives = 286/369 (77%), Gaps = 6/369 (1%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           SL+G  REEL +AL  IG+P+R +RMRT+Q+W WIY  GIR F  M ++ + +R  L  H
Sbjct: 15  SLLGATREELGDALAAIGVPEREIRMRTAQVWHWIYFHGIRSFDTMLNVGKGLRTTLAAH 74

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFP---ARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +S+  P++V E++S DGTRKWL+R P   A+  G   E+E VYIPE  RGTLC+SSQVGC
Sbjct: 75  YSLERPQVVSEQVSVDGTRKWLIRLPPVDAQDRGA--EVECVYIPESDRGTLCISSQVGC 132

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIV 183
           +LTCSFC+TGTQKLVRNL+A EI+ Q+++AR  LGDFPG    +  ++P+ G R I+NIV
Sbjct: 133 TLTCSFCHTGTQKLVRNLSAREIVSQLVVAREKLGDFPGLVPPKDGLLPTEGNRPITNIV 192

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL NFDNV+K++S+ SD  GLS S+RRIT+ST+G VP +  +G E G MLA+SL
Sbjct: 193 FMGMGEPLYNFDNVRKAVSVLSDGEGLSLSRRRITVSTAGVVPQMEALGREAGSMLAVSL 252

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV +DLR+ LVP+N+KYP++ L++ACR YPG SNARRITFEYVMLK INDSP +A  LI
Sbjct: 253 HAVRDDLRDKLVPLNKKYPIKTLLEACRTYPGASNARRITFEYVMLKDINDSPAEARELI 312

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKGIPAKINLIPFNPWPG  Y CSD   I  FS+ +  +GY+SP+RTPRG DILAACG
Sbjct: 313 RLLKGIPAKINLIPFNPWPGAPYDCSDWDRIERFSDIVFNAGYASPVRTPRGRDILAACG 372

Query: 364 QLKSLSKRI 372
           QLKS ++++
Sbjct: 373 QLKSETEKL 381


>gi|299133126|ref|ZP_07026321.1| radical SAM enzyme, Cfr family [Afipia sp. 1NLS2]
 gi|298593263|gb|EFI53463.1| radical SAM enzyme, Cfr family [Afipia sp. 1NLS2]
          Length = 403

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/367 (60%), Positives = 283/367 (77%), Gaps = 6/367 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + SLIG+ R EL   L ++G+P++  +MR  Q+W W+YVRG + F  M+++S+++R  L 
Sbjct: 28  RPSLIGLSRAELMACLGELGVPEKQRKMRAQQLWHWMYVRGAQTFADMTNVSKDMRTQLE 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F++  PE+V E+IS DGTRKWLLR P   +G   E+E VYIPE  RGTLCVSSQVGC+
Sbjct: 88  ARFTVDRPEVVAEQISNDGTRKWLLRLPGDGVGRAHEVECVYIPETDRGTLCVSSQVGCT 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC+TGTQ+LVRNLTA EI+ QV++AR  L D+   E       P+  R ++N+VMM
Sbjct: 148 LNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWVDRE------TPNGNRLVTNVVMM 201

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFD V+ +L+I  D+ G++ S+RRITLSTSG VPNI R+GEE GVMLAISLHA
Sbjct: 202 GMGEPLYNFDAVRDALNIVMDNEGIALSRRRITLSTSGVVPNIGRMGEETGVMLAISLHA 261

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LRN LVP+N+KYPL  L+DACR+YPG SN+RRITFEYVMLKG+NDS  DA  L+K+
Sbjct: 262 VRDELRNELVPLNKKYPLAQLLDACRNYPGASNSRRITFEYVMLKGVNDSLDDAKLLVKL 321

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG +Y CSD + I  FSE +  +GYSSP+RTPRG DILAACGQL
Sbjct: 322 LKGIPAKINLIPFNPWPGSKYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 381

Query: 366 KSLSKRI 372
           KS ++++
Sbjct: 382 KSETEKL 388


>gi|90421563|ref|YP_529933.1| hypothetical protein RPC_0035 [Rhodopseudomonas palustris BisB18]
 gi|122995691|sp|Q21DC2|RLMN_RHOPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|90103577|gb|ABD85614.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 399

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/377 (60%), Positives = 280/377 (74%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + SLIG+ R EL EAL  IG+     +MR  Q+W W+Y RG+++F  M+ IS+E+R  L 
Sbjct: 23  RPSLIGLSRAELAEALGGIGVAASQRKMRAQQLWHWMYFRGVQEFAEMTSISKEMRSQLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-EIETVYIPEKSRGTLCVSSQVGC 124
           +HF++  PE+V E+IS DGTRKWLLR P+   G    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 83  EHFTVARPEVVAEQISNDGTRKWLLRLPSGVSGEKAHEVECVYIPETDRGTLCVSSQVGC 142

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQKLVRNLTA EI+ QV++AR  L D+   E       P+  R ++N+VM
Sbjct: 143 TLNCSFCHTGTQKLVRNLTAGEIVGQVMVARDRLNDWADRE------TPNGNRLVTNVVM 196

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I SD+ G+  S+RR+TLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRVTLSTSGVVPNIVRAGEEIGVMLAISLH 256

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYPL  L+ ACR YPG SNARRITFEYVMLK +NDS  DA  L+K
Sbjct: 257 AVRDELRDELVPLNRKYPLAELLQACRDYPGASNARRITFEYVMLKDVNDSLDDAKLLVK 316

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L GIPAKINLIPFNPWPG  Y CSD   I  FSE I  +GYSSP+RTPRG DILAACGQ
Sbjct: 317 LLSGIPAKINLIPFNPWPGTAYKCSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 376

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    R+ ++
Sbjct: 377 LKSETEKLTAREREALR 393


>gi|205829897|sp|Q6NCS3|RLMN_RHOPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 399

 Score =  464 bits (1194), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/368 (61%), Positives = 281/368 (76%), Gaps = 7/368 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R +L + L  +G+     +MR  Q+W W+YVRG RDF  M+++S+E+R +L 
Sbjct: 23  KPSLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRAMLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-EIETVYIPEKSRGTLCVSSQVGC 124
           +HF++  PE+V E+IS DGTRKWLLR P+   G    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 83  EHFTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 142

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ+LVRNLTA EI+ QV++AR  LGD+   E       P+  R I+NIVM
Sbjct: 143 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRE------TPNGNRLITNIVM 196

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I SD+ G+  S+RRITLSTSG VPNI R G+EIGVMLAISLH
Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 256

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L++
Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQ 316

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD   I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 317 LLKGIPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 376

Query: 365 LKSLSKRI 372
           LKS ++++
Sbjct: 377 LKSETEKL 384


>gi|39933473|ref|NP_945749.1| hypothetical protein RPA0396 [Rhodopseudomonas palustris CGA009]
 gi|39647319|emb|CAE25840.1| Cfr family protein [Rhodopseudomonas palustris CGA009]
          Length = 424

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/368 (61%), Positives = 281/368 (76%), Gaps = 7/368 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R +L + L  +G+     +MR  Q+W W+YVRG RDF  M+++S+E+R +L 
Sbjct: 48  KPSLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRAMLA 107

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-EIETVYIPEKSRGTLCVSSQVGC 124
           +HF++  PE+V E+IS DGTRKWLLR P+   G    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 108 EHFTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 167

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ+LVRNLTA EI+ QV++AR  LGD+   E       P+  R I+NIVM
Sbjct: 168 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRE------TPNGNRLITNIVM 221

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I SD+ G+  S+RRITLSTSG VPNI R G+EIGVMLAISLH
Sbjct: 222 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 281

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L++
Sbjct: 282 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQ 341

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD   I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 342 LLKGIPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 401

Query: 365 LKSLSKRI 372
           LKS ++++
Sbjct: 402 LKSETEKL 409


>gi|148251858|ref|YP_001236443.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
           [Bradyrhizobium sp. BTAi1]
 gi|205829672|sp|A5E8P3|RLMN_BRASB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146404031|gb|ABQ32537.1| 23S rRNA m(2)A-2503 methyltransferase [Bradyrhizobium sp. BTAi1]
          Length = 403

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/377 (60%), Positives = 279/377 (74%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R EL   L  +G+P+R  +MR  Q+W WIY RG R F  MS +S++ R  L 
Sbjct: 27  KPSLIGLSRAELAARLGDVGVPERQQKMRVQQLWHWIYFRGARSFDEMSSVSKDTRTALA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + F++  PE+V E+IS DGTRKWLLR P+   +    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 87  ERFTVDRPEVVAEQISNDGTRKWLLRLPSGDDLQKAHEVECVYIPETDRGTLCVSSQVGC 146

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ+LVRNLTA EI+ QV++AR  L D+   E       P   R I+NIVM
Sbjct: 147 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWADRE------TPHGNRLITNIVM 200

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I SD+ G+  S+RRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 201 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRAGEEIGVMLAISLH 260

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYP+  L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L+K
Sbjct: 261 AVRDELRDELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARLLVK 320

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD + I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 321 LLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 380

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    RQ ++
Sbjct: 381 LKSETEKLSARERQALR 397


>gi|323136337|ref|ZP_08071419.1| radical SAM enzyme, Cfr family [Methylocystis sp. ATCC 49242]
 gi|322398411|gb|EFY00931.1| radical SAM enzyme, Cfr family [Methylocystis sp. ATCC 49242]
          Length = 392

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/371 (60%), Positives = 278/371 (74%), Gaps = 3/371 (0%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SL GM R E+ + L   G+P+R +RMR SQ+W WIY RG RDF  M +IS+ +R  L
Sbjct: 13  EKPSLAGMTRAEIADTLRAFGLPEREIRMRVSQLWHWIYFRGARDFGEMLNISKSLRLTL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           +  F + +PEIV+E++S DGTRKWLLR  P        E+E VYIPE  RGTLCVSSQVG
Sbjct: 73  DGAFGLRHPEIVEEQVSVDGTRKWLLRLAPVDAQDKGAEVECVYIPESDRGTLCVSSQVG 132

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISN 181
           C+L CSFC+TGTQKLVRNLT+ EI+ Q+L+AR  LGDFP  E     ++PS    R +SN
Sbjct: 133 CTLNCSFCHTGTQKLVRNLTSAEIIGQLLVARQRLGDFPDRERPTDGLVPSGEGVRAVSN 192

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N DNV  ++ + +D  GLS SKRRIT+STSG VP I R+G E G  LAI
Sbjct: 193 IVFMGMGEPLYNIDNVMAAIEVMADGDGLSLSKRRITVSTSGVVPQIERLGAECGPALAI 252

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV +DLRN LVP+NRKYP++ L+ ACR YPG SNARRITFEYVMLKG+NDSP +A  
Sbjct: 253 SLHAVRDDLRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSPAEARE 312

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++LKG+PAKINLIPFNPWPG  Y CSD + I  FS+ +  +GY+SP+RTPRG DILAA
Sbjct: 313 LVRLLKGVPAKINLIPFNPWPGAPYECSDWETIERFSDIVFNAGYASPVRTPRGRDILAA 372

Query: 362 CGQLKSLSKRI 372
           CGQLKS ++++
Sbjct: 373 CGQLKSETEKL 383


>gi|192288832|ref|YP_001989437.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris TIE-1]
 gi|254807199|sp|B3Q9D7|RLMN_RHOPT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|192282581|gb|ACE98961.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris TIE-1]
          Length = 399

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/368 (61%), Positives = 280/368 (76%), Gaps = 7/368 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R +L + L  +G+     +MR  Q+W W+YVRG RDF  M+++S+E+R  L 
Sbjct: 23  KPSLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRATLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-EIETVYIPEKSRGTLCVSSQVGC 124
           +HF++  PE+V E+IS DGTRKWLLR P+   G    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 83  EHFTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 142

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ+LVRNLTA EI+ QV++AR  LGD+   E       P+  R I+NIVM
Sbjct: 143 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRE------TPNGNRLITNIVM 196

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I SD+ G+  S+RRITLSTSG VPNI R G+EIGVMLAISLH
Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 256

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L++
Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQ 316

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD   I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 317 LLKGIPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 376

Query: 365 LKSLSKRI 372
           LKS ++++
Sbjct: 377 LKSETEKL 384


>gi|86747220|ref|YP_483716.1| hypothetical protein RPB_0093 [Rhodopseudomonas palustris HaA2]
 gi|123293381|sp|Q2J405|RLMN_RHOP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|86570248|gb|ABD04805.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 399

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/368 (61%), Positives = 281/368 (76%), Gaps = 7/368 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R EL E L  IG+     +MR  Q+W W+YVRG RDF  M+++S+E+R  L 
Sbjct: 23  KPSLIGLSRAELAERLGAIGVAPAQRKMRAQQLWHWMYVRGARDFAEMTNVSKEMRATLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +H ++  PE+V E+IS DGTRKWLLR P+   +    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 83  EHCTVDRPEVVAEQISADGTRKWLLRLPSGDDVQKAHEVECVYIPETDRGTLCVSSQVGC 142

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ QV++AR  LGD+   E       P+  R ++N+VM
Sbjct: 143 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRE------TPNGNRLVTNVVM 196

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+ V+ +L I +D+ G+  S+RR+TLSTSG VPNIAR G+EIGVMLAISLH
Sbjct: 197 MGMGEPLYNFEAVRDALLIVTDNEGIGISRRRVTLSTSGVVPNIARTGDEIGVMLAISLH 256

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L++
Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARRLVQ 316

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG +Y CSD   I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 317 LLKGIPAKINLIPFNPWPGSKYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 376

Query: 365 LKSLSKRI 372
           LKS ++++
Sbjct: 377 LKSETEKL 384


>gi|298293307|ref|YP_003695246.1| radical SAM enzyme, Cfr family [Starkeya novella DSM 506]
 gi|296929818|gb|ADH90627.1| radical SAM enzyme, Cfr family [Starkeya novella DSM 506]
          Length = 409

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/369 (58%), Positives = 283/369 (76%), Gaps = 2/369 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + SL G+ R  L EAL +IG+ +R  RMR +Q+W WIY+RG+  F  M+++ + +R  L 
Sbjct: 25  RRSLAGLDRAGLAEALAEIGVSEREQRMRVAQLWHWIYLRGVTSFDEMTNVGKGLRAKLE 84

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQVGC 124
           + F++  PE+V E++S DGTRKWLLR P    G  P ++E VYIPE  RGTLCVSSQVGC
Sbjct: 85  EAFTLARPEVVVEQVSNDGTRKWLLRLPPDIAGDKPHDVEMVYIPESDRGTLCVSSQVGC 144

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIV 183
           +L CSFC+TGTQ+LVRNLTA EI+ QV++AR  LGD+PG E   G  +P+ G R ++NIV
Sbjct: 145 TLNCSFCHTGTQRLVRNLTAAEIVAQVMVARDRLGDYPGQERAVGPGLPTEGDRLVTNIV 204

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL  +D+V +++ + +D  GL   KRRIT+STSG VP I ++G E+G MLAISL
Sbjct: 205 FMGMGEPLYAYDSVARAIEVLADGEGLGIGKRRITVSTSGVVPEIEKLGREVGPMLAISL 264

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV ++LR++LVPIN+KYPL+ L+DACR YP  SNA+RITFEYVMLKG+NDSP DA  L+
Sbjct: 265 HAVRDELRDVLVPINKKYPLKDLLDACRTYPAASNAKRITFEYVMLKGVNDSPADAKALV 324

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L GIPAKINLIPFNPWPG +Y CSD + I  FS+ + R+GYSSP+RTPRG DILAACG
Sbjct: 325 RLLAGIPAKINLIPFNPWPGTKYECSDWETIERFSDIVFRAGYSSPVRTPRGRDILAACG 384

Query: 364 QLKSLSKRI 372
           QLKS ++++
Sbjct: 385 QLKSETEKL 393


>gi|217979092|ref|YP_002363239.1| radical SAM enzyme, Cfr family [Methylocella silvestris BL2]
 gi|254807188|sp|B8EIR0|RLMN_METSB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|217504468|gb|ACK51877.1| radical SAM enzyme, Cfr family [Methylocella silvestris BL2]
          Length = 399

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/366 (59%), Positives = 278/366 (75%), Gaps = 1/366 (0%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           SL G+ R+ L  ALL+IG P+R +RMRT+Q+W WIY RG   F  M ++S+ +R  L + 
Sbjct: 24  SLAGLTRDGLAAALLEIGAPERELRMRTAQLWHWIYHRGAGSFDDMLNVSKVLRTQLAEK 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F++  P+IV E++S DGTRKWL+RF P+       E+E VYIP+  RGTLCVSSQVGC+L
Sbjct: 84  FTLARPQIVTEQVSTDGTRKWLIRFAPSAESDRLAEVECVYIPDVDRGTLCVSSQVGCTL 143

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQK VRNLTA+EI+ Q+++AR  +GDFPG    +G    S  R ++NIV MG
Sbjct: 144 TCSFCHTGTQKFVRNLTAQEIIAQLIIARDRIGDFPGLAPRDGKGSNSGSRLVTNIVFMG 203

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N DNV  ++S+ SD  GLS S+RRIT+ST+G VP +  +GE+ G MLAISLHAV
Sbjct: 204 MGEPLYNLDNVVDAVSVLSDGDGLSLSRRRITVSTAGVVPKLPELGEKTGAMLAISLHAV 263

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++LRN LVP+N+KYP+  L+ ACR YPG SNARRITFEYVMLKGINDSP DA  L+++L
Sbjct: 264 RDELRNTLVPLNKKYPIAALLQACRDYPGASNARRITFEYVMLKGINDSPSDARELVRLL 323

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KGIPAKINLIPFNPWPG  Y CSD   I  FS+ +  +GY+SP+RTPRG DILAACGQLK
Sbjct: 324 KGIPAKINLIPFNPWPGTAYECSDDAVIEKFSDIVFNAGYASPVRTPRGRDILAACGQLK 383

Query: 367 SLSKRI 372
           S ++++
Sbjct: 384 SETEKL 389


>gi|154244355|ref|YP_001415313.1| radical SAM protein [Xanthobacter autotrophicus Py2]
 gi|205829935|sp|A7ICB3|RLMN_XANP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|154158440|gb|ABS65656.1| radical SAM enzyme, Cfr family [Xanthobacter autotrophicus Py2]
          Length = 414

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/367 (60%), Positives = 282/367 (76%), Gaps = 2/367 (0%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           SLIG+ R++L  AL  IG+     RMR +Q+W WIY+RG  DF  M+++S+ +R  L   
Sbjct: 32  SLIGLDRDKLGAALDAIGVRGSDRRMRVNQLWHWIYLRGATDFAEMTNVSKHLRADLAAA 91

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +S+  PEIV E++S DGTRKWLLRFPA   G  P +IETVYIPE  RGTLCVSSQVGC+L
Sbjct: 92  YSLARPEIVMEQVSQDGTRKWLLRFPADHPGERPHDIETVYIPESDRGTLCVSSQVGCTL 151

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVMM 185
            CSFC+TGTQ+LVRNLTA EI+ QV++AR  LGD+PG +   G  +P+ G R ++NIV M
Sbjct: 152 NCSFCHTGTQRLVRNLTAAEIVAQVMVARDRLGDYPGRDRATGPGLPTEGDRLVTNIVFM 211

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL  +D+VK+++   SD  GL   KRRIT+STSG VP I R+G E+G MLAISLHA
Sbjct: 212 GMGEPLYAYDSVKEAIETLSDGDGLGLGKRRITVSTSGVVPEIERLGAEVGPMLAISLHA 271

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V + LR+ LVPIN+KYP+  L++ACR YP  SNA+RITFEYVMLKG+NDSP DA  L+K+
Sbjct: 272 VRDKLRDELVPINKKYPIAELMEACRTYPAASNAKRITFEYVMLKGVNDSPADARALVKL 331

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+PAKINLIPFNPWPG +Y CSD + I  FS+ + R+GY+SP+RTPRG DILAACGQL
Sbjct: 332 LEGVPAKINLIPFNPWPGTQYECSDWETIERFSDIVFRAGYASPVRTPRGRDILAACGQL 391

Query: 366 KSLSKRI 372
           KS S+++
Sbjct: 392 KSESEKL 398


>gi|85714487|ref|ZP_01045475.1| hypothetical protein NB311A_16087 [Nitrobacter sp. Nb-311A]
 gi|85698934|gb|EAQ36803.1| hypothetical protein NB311A_16087 [Nitrobacter sp. Nb-311A]
          Length = 423

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/377 (59%), Positives = 277/377 (73%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R E+ E L  IG+P+   RMR  Q+W W+YVRG + F  M+ +S+++   L 
Sbjct: 47  KPSLIGLSRAEIAERLAAIGVPREQRRMRVQQLWHWMYVRGAQSFSEMTSVSKDMHTELE 106

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +H ++  PE+V E+IS DGTRKWLLR P+   +  P E+E VYIPE  RGTLC+SSQVGC
Sbjct: 107 KHVTVDRPEVVAEQISSDGTRKWLLRLPSGNDLEKPHEVECVYIPETDRGTLCISSQVGC 166

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR  L D+   E       P   R ++NIVM
Sbjct: 167 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRE------TPHGNRLVTNIVM 220

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+  L I +D+ G+  SKRRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 221 MGMGEPLYNFDAVRDGLLIVADNEGIGISKRRITLSTSGVVPNIVRAGEEIGVMLAISLH 280

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LRN LVP+NRKYP+  L+ ACR YP  SNA+RITFEYVMLKG+NDS  DA  L+K
Sbjct: 281 AVRDELRNELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLEDAKRLVK 340

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGI AKINLIPFNPWPG  Y CSD   I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 341 LLKGIHAKINLIPFNPWPGTRYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 400

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    RQ ++
Sbjct: 401 LKSETEKLSARERQALR 417


>gi|240138201|ref|YP_002962673.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens
           AM1]
 gi|254560761|ref|YP_003067856.1| Fe-S containing enzyme [Methylobacterium extorquens DM4]
 gi|240008170|gb|ACS39396.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens
           AM1]
 gi|254268039|emb|CAX23910.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens
           DM4]
          Length = 425

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/371 (59%), Positives = 281/371 (75%), Gaps = 5/371 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SL+G+ RE L++AL+ IG+P+R  RMR SQ+W WIYVRG R+F  M+++ + ++  L
Sbjct: 34  RKASLVGLTREGLKQALIGIGVPERETRMRVSQVWHWIYVRGAREFSEMTNVGKGLKAQL 93

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFP---ARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             HF++  PE+V E++S DGTRKWLLR     A       EIE VYIP   RGTLCVSSQ
Sbjct: 94  ADHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+LTCSFC+TGTQ+LVRNL+  EI+ Q+++AR  LGDF G   + G      GR ++N
Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTG--QMPGKDGGEPGRLVTN 211

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N D V  ++++ SD  GL+ S+RRIT+STSG VP I R+G E   MLAI
Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV +DLR+ LVP+NRKYP+  L+DACR+YPGLSNARRITFEYVMLKG+NDS  DA  
Sbjct: 272 SLHAVRDDLRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++LKGIPAKINLIPFNPWPG +Y CSD + I  FSE +  +GY+SP+RTPRG DILAA
Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASPVRTPRGRDILAA 391

Query: 362 CGQLKSLSKRI 372
           CGQLKS ++++
Sbjct: 392 CGQLKSETEKL 402


>gi|91975189|ref|YP_567848.1| hypothetical protein RPD_0709 [Rhodopseudomonas palustris BisB5]
 gi|123763075|sp|Q13D92|RLMN_RHOPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|91681645|gb|ABE37947.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 398

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/368 (61%), Positives = 279/368 (75%), Gaps = 7/368 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R EL E L  IG+     +MR  Q+W W+Y+RG RDF  M+++S+E+R  L+
Sbjct: 22  KPSLIGLSRAELAERLGHIGVAPAQRKMRAQQLWNWMYLRGARDFSEMTNVSKEMRAQLS 81

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            HF++  PE+V E+IS DGTRKWLLR P+   +    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 82  DHFTVDRPEVVAEQISNDGTRKWLLRLPSGDDVQKAHEVECVYIPETDRGTLCVSSQVGC 141

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ QV++AR  L D+   E       P+  R ++NIVM
Sbjct: 142 TLNCSFCHTGTQRLVRNLTAGEIIGQVMVARDRLNDWVDRE------TPNGNRLVTNIVM 195

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+ V+ +L I +D+ G+  S+RR+TLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 196 MGMGEPLYNFEAVRDALLIVTDNEGIGISRRRVTLSTSGVVPNIIRTGEEIGVMLAISLH 255

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L++
Sbjct: 256 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARRLVQ 315

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD   I  FSE I  +GYSSP+RTPRG DILAACGQ
Sbjct: 316 LLKGIPAKINLIPFNPWPGSAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 375

Query: 365 LKSLSKRI 372
           LKS ++++
Sbjct: 376 LKSETEKL 383


>gi|146337410|ref|YP_001202458.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
           [Bradyrhizobium sp. ORS278]
 gi|205829673|sp|A4YJY2|RLMN_BRASO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146190216|emb|CAL74208.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
           [Bradyrhizobium sp. ORS278]
          Length = 403

 Score =  461 bits (1186), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/377 (60%), Positives = 280/377 (74%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R EL   L  IG+P+R  +MR  Q+W W+Y RG R F  M+ +S++ R+ L 
Sbjct: 27  KPSLIGLSRAELAARLGDIGVPERQQKMRVQQLWHWLYFRGARSFDEMTSVSKDTRNGLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + F++  PE+V E+IS DGTRKWLLR P+   +    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 87  ERFTVDRPEVVAEQISNDGTRKWLLRLPSGDDLQKAHEVECVYIPETDRGTLCVSSQVGC 146

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ+LVRNLTA EI+ Q+++AR  L D+   E       P   R I+NIVM
Sbjct: 147 TLNCAFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRE------TPHGNRLITNIVM 200

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+ V+ +L I SD+ G+  S+RRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 201 MGMGEPLYNFEAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRAGEEIGVMLAISLH 260

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LRN LVP+NRKYP+  L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L+K
Sbjct: 261 AVRDELRNELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARLLVK 320

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD + I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 321 LLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 380

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    RQ ++
Sbjct: 381 LKSETEKLSARERQALR 397


>gi|23012331|ref|ZP_00052443.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum
           magnetotacticum MS-1]
          Length = 425

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/371 (59%), Positives = 282/371 (76%), Gaps = 5/371 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SL+G  RE L++AL+ IG+P+R  RMRTSQIW W+YVRG R+F  M+++ + ++  L
Sbjct: 34  RKASLVGQTREGLKQALIGIGVPEREARMRTSQIWHWLYVRGAREFSEMTNVGKGLKAQL 93

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFP---ARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            QHF++  PE+V E++S DGTRKWLLR     A       EIE VYIP   RGTLCVSSQ
Sbjct: 94  AQHFTLDRPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+LTCSFC+TGTQ+LVRNL+  EI+ Q+++AR  LGDF G   + G      GR ++N
Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVSQLVVARDALGDFTG--QMPGKDGGEAGRLVTN 211

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N D V  ++++ SD  GL+ S+RRIT+STSG VP I R+G E   MLAI
Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDPEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV ++LR+ LVP+NRKYP+  L++ACR+YPGLSNARRITFEYVMLKG+NDS  DA  
Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLEACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++LKGIPAKINLIPFNPWPG +Y CSD + I  FSE +  +GY+SP+RTPRG DILAA
Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEFVFNAGYASPVRTPRGRDILAA 391

Query: 362 CGQLKSLSKRI 372
           CGQLKS ++++
Sbjct: 392 CGQLKSETEKL 402


>gi|188580846|ref|YP_001924291.1| radical SAM enzyme, Cfr family [Methylobacterium populi BJ001]
 gi|205829790|sp|B1ZG98|RLMN_METPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|179344344|gb|ACB79756.1| radical SAM enzyme, Cfr family [Methylobacterium populi BJ001]
          Length = 425

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/371 (59%), Positives = 283/371 (76%), Gaps = 5/371 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SL+G+ RE L++AL+ IG+P+R  RMR SQIW W+YVRG R+F  M+++ + ++  L
Sbjct: 34  RKASLVGLTREGLKQALIGIGVPERETRMRVSQIWHWLYVRGAREFSEMTNVGKGLKAQL 93

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFP---ARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            +HF++  PE+V E++S DGTRKWLLR     A       EIE VYIP   RGTLCVSSQ
Sbjct: 94  AEHFTLDRPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+LTCSFC+TGTQ+LVRNL+  EI+ Q+++AR  LGDF G   + G     VGR ++N
Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVSQLVVARDALGDFTG--QMPGKDGGEVGRLVTN 211

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N D V  ++++ SD  GL+ S+RRIT+STSG VP I R+G E   MLAI
Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV ++LR+ LVP+NRKYP+  L++ACR+YPGLSNARRITFEYVMLKG+NDS  DA  
Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLEACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++LKGIPAKINLIPFNPWPG +Y CSD + I  FSE +  +GY+SP+RTPRG DILAA
Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEFVFNAGYASPVRTPRGRDILAA 391

Query: 362 CGQLKSLSKRI 372
           CGQLKS ++++
Sbjct: 392 CGQLKSETEKL 402


>gi|75676990|ref|YP_319411.1| hypothetical protein Nwi_2806 [Nitrobacter winogradskyi Nb-255]
 gi|74421860|gb|ABA06059.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrobacter winogradskyi
           Nb-255]
          Length = 427

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/377 (59%), Positives = 277/377 (73%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R E+ E L  IGIP+   RMR  Q+W W+YVRG R F  M+ +S+++R  L 
Sbjct: 51  KPSLIGLSRAEMAERLAAIGIPREQRRMRVQQLWHWMYVRGARTFAEMTSVSKDMRAELE 110

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +H ++  PE+V E+IS DGTRKWLLR P+   +  P E+E VYIPE  RGTLCVSSQVGC
Sbjct: 111 KHVTLDRPEVVAEQISSDGTRKWLLRLPSGDDLEKPHEVECVYIPETDRGTLCVSSQVGC 170

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR  L D+   E       P   R ++NIVM
Sbjct: 171 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRE------TPHGNRLVTNIVM 224

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+  L I +D+ G+  SKRRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 225 MGMGEPLYNFDAVRDGLLIVADNEGIGISKRRITLSTSGVVPNIVRAGEEIGVMLAISLH 284

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYP+  L+ ACR YP  SNA+RITFEYVMLKG+NDS  DA  L+K
Sbjct: 285 AVRDELRDELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDARRLVK 344

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L GI AKINLIPFNPWPG  Y CSD   I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 345 LLNGIHAKINLIPFNPWPGTRYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 404

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    RQ ++
Sbjct: 405 LKSETEKLSARERQALR 421


>gi|218529897|ref|YP_002420713.1| radical SAM enzyme, Cfr family [Methylobacterium chloromethanicum
           CM4]
 gi|218522200|gb|ACK82785.1| radical SAM enzyme, Cfr family [Methylobacterium chloromethanicum
           CM4]
          Length = 425

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/371 (59%), Positives = 281/371 (75%), Gaps = 5/371 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SL+G+ RE L++AL+ IG+P+R  RMR SQ+W WIYVRG R+F  M+++ + ++  L
Sbjct: 34  RKASLVGLTREGLKQALIGIGVPERETRMRVSQVWHWIYVRGAREFSEMTNVGKGLKAQL 93

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFP---ARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             HF++  PE+V E++S DGTRKWLLR     A       EIE VYIP   RGTLCVSSQ
Sbjct: 94  ADHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+LTCSFC+TGTQ+LVRNL+  EI+ Q+++AR  LGDF G   + G      GR ++N
Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTG--QMPGKDGGEPGRLVTN 211

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N D V  ++++ SD  GL+ S+RRIT+STSG VP I R+G E   MLAI
Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV ++LR+ LVP+NRKYP+  L+DACR+YPGLSNARRITFEYVMLKG+NDS  DA  
Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++LKGIPAKINLIPFNPWPG +Y CSD + I  FSE +  +GY+SP+RTPRG DILAA
Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASPVRTPRGRDILAA 391

Query: 362 CGQLKSLSKRI 372
           CGQLKS ++++
Sbjct: 392 CGQLKSETEKL 402


>gi|205829850|sp|Q3SNT2|RLMN_NITWN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 397

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/377 (59%), Positives = 277/377 (73%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R E+ E L  IGIP+   RMR  Q+W W+YVRG R F  M+ +S+++R  L 
Sbjct: 21  KPSLIGLSRAEMAERLAAIGIPREQRRMRVQQLWHWMYVRGARTFAEMTSVSKDMRAELE 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +H ++  PE+V E+IS DGTRKWLLR P+   +  P E+E VYIPE  RGTLCVSSQVGC
Sbjct: 81  KHVTLDRPEVVAEQISSDGTRKWLLRLPSGDDLEKPHEVECVYIPETDRGTLCVSSQVGC 140

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR  L D+   E       P   R ++NIVM
Sbjct: 141 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRE------TPHGNRLVTNIVM 194

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+  L I +D+ G+  SKRRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 195 MGMGEPLYNFDAVRDGLLIVADNEGIGISKRRITLSTSGVVPNIVRAGEEIGVMLAISLH 254

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYP+  L+ ACR YP  SNA+RITFEYVMLKG+NDS  DA  L+K
Sbjct: 255 AVRDELRDELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDARRLVK 314

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L GI AKINLIPFNPWPG  Y CSD   I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 315 LLNGIHAKINLIPFNPWPGTRYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 374

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    RQ ++
Sbjct: 375 LKSETEKLSARERQALR 391


>gi|316931629|ref|YP_004106611.1| radical SAM protein [Rhodopseudomonas palustris DX-1]
 gi|315599343|gb|ADU41878.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris DX-1]
          Length = 399

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/368 (61%), Positives = 280/368 (76%), Gaps = 7/368 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R +L + L +IG+     +MR  Q+W W+YVRG RDF  M+++S+E+R  L 
Sbjct: 23  KPSLIGLSRAQLCDRLGEIGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRATLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-EIETVYIPEKSRGTLCVSSQVGC 124
           +H ++  PE+V E+IS DGTRKWLLR P+   G    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 83  EHVTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 142

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ+LVRNLTA EI+ QV++AR  L D+   E       P+  R I+NIVM
Sbjct: 143 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWIDRE------TPNGNRLITNIVM 196

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I SD+ G+  S+RRITLSTSG VPNI R G+EIGVMLAISLH
Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 256

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+ND+  DA  L++
Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDTIDDARKLVQ 316

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG +Y CSD   I  FSE I  +GYSSP+RTPRG DILAACGQ
Sbjct: 317 LLKGIPAKINLIPFNPWPGSKYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 376

Query: 365 LKSLSKRI 372
           LKS ++++
Sbjct: 377 LKSETEKL 384


>gi|163851067|ref|YP_001639110.1| radical SAM protein [Methylobacterium extorquens PA1]
 gi|205829789|sp|A9W383|RLMN_METEP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|163662672|gb|ABY30039.1| radical SAM enzyme, Cfr family [Methylobacterium extorquens PA1]
          Length = 425

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/371 (59%), Positives = 281/371 (75%), Gaps = 5/371 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SL+G+ RE L++AL+ IG+P+R  RMR SQ+W WIYVRG R+F  M+++ + ++  L
Sbjct: 34  RKASLVGLTREGLKQALIGIGVPERETRMRVSQVWHWIYVRGAREFSEMTNVGKGLKAQL 93

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFP---ARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             HF++  PE+V E++S DGTRKWLLR     A       EIE VYIP   RGTLCVSSQ
Sbjct: 94  ADHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+LTCSFC+TGTQ+LVRNL+  EI+ Q+++AR  LGDF G   + G      GR ++N
Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTG--QMPGKDGGEPGRLVTN 211

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N D V  ++++ SD  GL+ S+RRIT+STSG VP + R+G E   MLAI
Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQMERLGLEANAMLAI 271

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV ++LR+ LVP+NRKYP+  L+DACR+YPGLSNARRITFEYVMLKG+NDS  DA  
Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++LKGIPAKINLIPFNPWPG +Y CSD + I  FSE +  +GY+SP+RTPRG DILAA
Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASPVRTPRGRDILAA 391

Query: 362 CGQLKSLSKRI 372
           CGQLKS ++++
Sbjct: 392 CGQLKSETEKL 402


>gi|27375636|ref|NP_767165.1| hypothetical protein bll0525 [Bradyrhizobium japonicum USDA 110]
 gi|81740269|sp|Q89X03|RLMN_BRAJA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|27348773|dbj|BAC45790.1| bll0525 [Bradyrhizobium japonicum USDA 110]
          Length = 400

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/377 (60%), Positives = 279/377 (74%), Gaps = 9/377 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R EL + L +IG+     +MR  Q+W W+Y RG ++F  M+ IS+ +R  L 
Sbjct: 26  KPSLIGLSRNELADRLGEIGVAPAQRKMRVQQLWHWMYFRGAQNFDEMTSISKGIRAELA 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           QHF++  PE+V E+IS DGTRKWLLR P+   +    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 86  QHFTVDRPEVVAEQISNDGTRKWLLRLPSGDNVEKAHEVECVYIPETDRGTLCVSSQVGC 145

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ QV++AR  L D+   ED          R+++NIVM
Sbjct: 146 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWADRED--------GTRRVTNIVM 197

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I  D+ G+  S+RRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 198 MGMGEPLYNFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLH 257

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LRN LVP+NRKYP++ L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L+K
Sbjct: 258 AVRDELRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVK 317

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGI AKINLIPFNPWPG  Y CSD   I  FSE I  +GYSSP+RTPRG DILAACGQ
Sbjct: 318 LLKGIHAKINLIPFNPWPGTAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 377

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    RQ ++
Sbjct: 378 LKSETEKLSARERQTLR 394


>gi|92119085|ref|YP_578814.1| hypothetical protein Nham_3626 [Nitrobacter hamburgensis X14]
 gi|123386907|sp|Q1QHE3|RLMN_NITHX RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|91801979|gb|ABE64354.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrobacter hamburgensis
           X14]
          Length = 397

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/377 (59%), Positives = 278/377 (73%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R E+ E L  IG+     RMR  Q+W W+YVRG +    M+++S+++R  L 
Sbjct: 21  KPSLIGLSRAEISERLAAIGVAPAQRRMRVQQLWHWMYVRGAKTVGEMTNVSKDMRAELE 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +H ++  PE+V E+IS DGTRKWLLR P+   +  P E+E VYIPE  RGTLCVSSQVGC
Sbjct: 81  KHVTVDRPEVVAEQISNDGTRKWLLRLPSGNTLEKPHEVECVYIPETDRGTLCVSSQVGC 140

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR  L D+   E       P   R ++NIVM
Sbjct: 141 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRE------TPHGNRLVTNIVM 194

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I +D+ G+  SKRRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 195 MGMGEPLYNFDAVRDALLIVADNEGIGISKRRITLSTSGVVPNIVRTGEEIGVMLAISLH 254

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LRN LVP+NRKYP+  L+ ACR YP  SNA+RITFEYVMLKG+NDS  DA  L+K
Sbjct: 255 AVRDELRNELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDAKLLVK 314

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGI AKINLIPFNPWPG  Y CSD + I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 315 LLKGIHAKINLIPFNPWPGTRYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 374

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    RQ ++
Sbjct: 375 LKSETEKLSARERQALR 391


>gi|220924357|ref|YP_002499659.1| radical SAM enzyme, Cfr family [Methylobacterium nodulans ORS 2060]
 gi|219948964|gb|ACL59356.1| radical SAM enzyme, Cfr family [Methylobacterium nodulans ORS 2060]
          Length = 431

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/371 (58%), Positives = 277/371 (74%), Gaps = 4/371 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + SL+G+ R  L E L  IG+P+R  RMRT Q+W WI VRG   F+ M+++ + ++  L 
Sbjct: 37  RPSLVGLTRNALRERLAAIGVPEREQRMRTGQLWHWINVRGASSFEAMTNVGKALKAELE 96

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPA---RCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           Q +++  PE+V E++S DGTRKWLLR P           EIE VYIP   RGTLCVSSQV
Sbjct: 97  QVYTLDRPEVVSEQVSRDGTRKWLLRMPPTGRHDHNRGAEIECVYIPANDRGTLCVSSQV 156

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISN 181
           GC+LTCSFC+TGTQ+LVRNL+A+EI  Q+++AR  LGD+PG    +G  +P  G R +SN
Sbjct: 157 GCTLTCSFCHTGTQRLVRNLSAQEITAQLVVARDRLGDWPGQSPPKGTFVPVDGSRFVSN 216

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +V MGMGEPL N DNV  ++ + SD+ GL  S+RRIT+STSG VP   R+G +   MLAI
Sbjct: 217 VVFMGMGEPLYNVDNVIDAIGVMSDNEGLGLSRRRITVSTSGVVPQFERLGIDANAMLAI 276

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV +DLRN+LVP+NRKYP+  L+DACR+YPG+SNARRITFEYVMLKG+NDS  +A  
Sbjct: 277 SLHAVRDDLRNVLVPLNRKYPIRELLDACRNYPGVSNARRITFEYVMLKGVNDSDAEARE 336

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++LKGIPAKINLIPFNPWPG  Y CSD + I  FSE +  +GY+SP+RTPRG DILAA
Sbjct: 337 LVRLLKGIPAKINLIPFNPWPGSSYECSDWERIERFSEIVFNAGYASPVRTPRGRDILAA 396

Query: 362 CGQLKSLSKRI 372
           CGQLKS ++++
Sbjct: 397 CGQLKSETEKL 407


>gi|154251833|ref|YP_001412657.1| radical SAM protein [Parvibaculum lavamentivorans DS-1]
 gi|205829796|sp|A7HSW7|RLMN_PARL1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|154155783|gb|ABS63000.1| radical SAM enzyme, Cfr family [Parvibaculum lavamentivorans DS-1]
          Length = 399

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/361 (62%), Positives = 272/361 (75%), Gaps = 9/361 (2%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L G+ R  L +AL   G+P   +RMR  QIW  +Y RG  DF+ M+ +S+E+R  L   F
Sbjct: 24  LAGLTRPLLMDALKAFGLPDNQLRMRAGQIWNGLYNRGFTDFERMTTLSKELRGKLADAF 83

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGP-VEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I   EIV E+ S DGTRKWLLR P+   G P  E+ETVYIPE+ RGTLCVSSQVGC+LT
Sbjct: 84  DISRLEIVTEQKSVDGTRKWLLRLPSGIPGVPGPEVETVYIPEEGRGTLCVSSQVGCTLT 143

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-GCEDIEGMVIPSVGRKISNIVMMG 186
           C+FC+TGTQKLVRNLTA EI+ Q+LLAR  LG++P G  + E        R I+NIVMMG
Sbjct: 144 CTFCHTGTQKLVRNLTAGEIVGQILLARDALGEWPDGGRNSED-------RLITNIVMMG 196

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ +L + SD  GLS SKRRITLSTSG VP I R GEEIG MLAISLHAV
Sbjct: 197 MGEPLYNFENVRDALEVVSDGEGLSLSKRRITLSTSGVVPMIERAGEEIGCMLAISLHAV 256

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++ RN LVP+N+KYP+  L++ACR+YPG+SNARRITFEYVMLKG+NDS  DA  L+++L
Sbjct: 257 DDETRNRLVPLNKKYPIAELLEACRNYPGVSNARRITFEYVMLKGVNDSLEDAKALVRLL 316

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           K IPAKINLIPFNPWPG  Y CSD + I  F++ + R+GY+SP+RTPRG DI+AACGQLK
Sbjct: 317 KHIPAKINLIPFNPWPGSPYECSDWEQIEKFADVVNRAGYASPVRTPRGRDIMAACGQLK 376

Query: 367 S 367
           S
Sbjct: 377 S 377


>gi|170742676|ref|YP_001771331.1| radical SAM protein [Methylobacterium sp. 4-46]
 gi|205829810|sp|B0UQR1|RLMN_METS4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|168196950|gb|ACA18897.1| radical SAM enzyme, Cfr family [Methylobacterium sp. 4-46]
          Length = 431

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/371 (57%), Positives = 276/371 (74%), Gaps = 4/371 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + SL+G+ R  L E L  IG+P+R  RMRT Q+W WI VRG   F+ M+++ + ++  L 
Sbjct: 37  RPSLVGLTRGALRERLAAIGVPEREQRMRTGQLWHWINVRGAASFEAMTNVGKGLKAQLE 96

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPA---RCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           + +++  PE+V E++S DGTRKWLLR P           EIE VYIP   RGTLCVSSQV
Sbjct: 97  EAYTLDRPEVVSEQVSRDGTRKWLLRMPPTGRHDHNRGAEIECVYIPANDRGTLCVSSQV 156

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISN 181
           GC+LTCSFC+TGTQ+LVRNL+A+EI  Q+++AR  LGD+PG    +G  +P  G R +SN
Sbjct: 157 GCTLTCSFCHTGTQRLVRNLSAQEITAQLVVARDRLGDWPGQVPPKGTFVPVDGSRFVSN 216

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N DNV  ++ + SD+ GL  S+RRIT+STSG VP   R+G +   MLAI
Sbjct: 217 IVFMGMGEPLYNVDNVVDAVGVMSDNEGLGLSRRRITVSTSGVVPQFERLGIDANAMLAI 276

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV +DLR+ LVP+NRKYP+  L++ACR+YPG+SNARRITFEYVMLKG+NDS  +A  
Sbjct: 277 SLHAVRDDLRDELVPLNRKYPIRTLLEACRNYPGVSNARRITFEYVMLKGVNDSDSEARE 336

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++LKGIPAKINLIPFNPWPG  Y CSD + I  FSE +  +GY+SP+RTPRG DILAA
Sbjct: 337 LVRLLKGIPAKINLIPFNPWPGSRYECSDWERIERFSEIVFNAGYASPVRTPRGRDILAA 396

Query: 362 CGQLKSLSKRI 372
           CGQLKS ++++
Sbjct: 397 CGQLKSETEKL 407


>gi|170747554|ref|YP_001753814.1| radical SAM protein [Methylobacterium radiotolerans JCM 2831]
 gi|170654076|gb|ACB23131.1| radical SAM enzyme, Cfr family [Methylobacterium radiotolerans JCM
           2831]
          Length = 430

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/374 (56%), Positives = 271/374 (72%), Gaps = 8/374 (2%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ SL+G+ R+ L+  L+ +G+P+R  RMR  Q+W W+  RG  DF  M+++ + ++  L
Sbjct: 36  RRPSLVGLTRDALKAQLIGMGVPERESRMRAGQVWHWVNFRGASDFAEMTNVGKALKAQL 95

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPA---RCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            +HF++  PE+   ++S DGTRKWLLR      +      EIE VYIP   RGTLCVSSQ
Sbjct: 96  AEHFTLERPEVASRQVSRDGTRKWLLRMAPTNRQEHNRGAEIECVYIPGPDRGTLCVSSQ 155

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG---CEDIEGMVIPSVGRK 178
           VGC+LTCSFC+TGTQ+LVRNL+A EI+ Q++ AR  LGD+PG     D  G     VGR 
Sbjct: 156 VGCTLTCSFCHTGTQRLVRNLSAAEIVQQLVTARDELGDWPGQMPSRDAGGS--GEVGRL 213

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           ++NIV MGMGEPL N D V  ++ + SD  GL  S+RRIT+STSG VP I R+GE+   M
Sbjct: 214 VTNIVFMGMGEPLYNLDAVVDAVGVMSDQEGLGLSRRRITVSTSGVVPQIPRLGEQANAM 273

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLHAV +DLR+ LVP+NRKYP+  L+ ACR YPGLSNARRITFEYVMLKG+NDS  D
Sbjct: 274 LAISLHAVRDDLRDELVPLNRKYPIAELLAACRAYPGLSNARRITFEYVMLKGVNDSDAD 333

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L+++LKGIPAKINLIPFNPWPG  Y CSD   I  FSE +  +GY+SP+RTPRG DI
Sbjct: 334 ARELVRLLKGIPAKINLIPFNPWPGSRYECSDWDRIERFSEIVFNAGYASPVRTPRGRDI 393

Query: 359 LAACGQLKSLSKRI 372
           LAACGQLKS ++++
Sbjct: 394 LAACGQLKSETEKL 407


>gi|205829854|sp|B1M1U6|RLMN_METRJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 424

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/374 (56%), Positives = 271/374 (72%), Gaps = 8/374 (2%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ SL+G+ R+ L+  L+ +G+P+R  RMR  Q+W W+  RG  DF  M+++ + ++  L
Sbjct: 30  RRPSLVGLTRDALKAQLIGMGVPERESRMRAGQVWHWVNFRGASDFAEMTNVGKALKAQL 89

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPA---RCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            +HF++  PE+   ++S DGTRKWLLR      +      EIE VYIP   RGTLCVSSQ
Sbjct: 90  AEHFTLERPEVASRQVSRDGTRKWLLRMAPTNRQEHNRGAEIECVYIPGPDRGTLCVSSQ 149

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG---CEDIEGMVIPSVGRK 178
           VGC+LTCSFC+TGTQ+LVRNL+A EI+ Q++ AR  LGD+PG     D  G     VGR 
Sbjct: 150 VGCTLTCSFCHTGTQRLVRNLSAAEIVQQLVTARDELGDWPGQMPSRDAGGS--GEVGRL 207

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           ++NIV MGMGEPL N D V  ++ + SD  GL  S+RRIT+STSG VP I R+GE+   M
Sbjct: 208 VTNIVFMGMGEPLYNLDAVVDAVGVMSDQEGLGLSRRRITVSTSGVVPQIPRLGEQANAM 267

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLHAV +DLR+ LVP+NRKYP+  L+ ACR YPGLSNARRITFEYVMLKG+NDS  D
Sbjct: 268 LAISLHAVRDDLRDELVPLNRKYPIAELLAACRAYPGLSNARRITFEYVMLKGVNDSDAD 327

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L+++LKGIPAKINLIPFNPWPG  Y CSD   I  FSE +  +GY+SP+RTPRG DI
Sbjct: 328 ARELVRLLKGIPAKINLIPFNPWPGSRYECSDWDRIERFSEIVFNAGYASPVRTPRGRDI 387

Query: 359 LAACGQLKSLSKRI 372
           LAACGQLKS ++++
Sbjct: 388 LAACGQLKSETEKL 401


>gi|146276099|ref|YP_001166258.1| radical SAM protein [Rhodobacter sphaeroides ATCC 17025]
 gi|205829868|sp|A4WNI9|RLMN_RHOS5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145554340|gb|ABP68953.1| radical SAM enzyme, Cfr family [Rhodobacter sphaeroides ATCC 17025]
          Length = 392

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/377 (55%), Positives = 276/377 (73%), Gaps = 10/377 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++G+ REEL  AL+  G P+R  RMR  Q+W+W+Y  G+RDF  M++++++ R LL +H
Sbjct: 25  NIVGLTREELMAALVAAGTPERQARMRMGQVWQWVYHWGVRDFAQMTNLAKDYRALLAEH 84

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F+I+ PE+V  +IS DGTRK+L+R     I G  E+ETVYIPE+ RGTLCVSSQVGC+LT
Sbjct: 85  FAIVLPEVVTRQISADGTRKYLIR-----IAGGHEVETVYIPEEGRGTLCVSSQVGCTLT 139

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV+L R  LG++P     E        R +SN+V+MGM
Sbjct: 140 CSFCHTGTQKLVRNLTAGEIVGQVMLVRDDLGEWP-----ERGAPKDETRLVSNLVLMGM 194

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ +  D  GLS S+RRITLSTSG VP IAR  EEIG  LAIS HA +
Sbjct: 195 GEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATT 254

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R+ILVPIN+++ +  L+D+ R YP LSN+ RITFEYVML GINDS  DA  L+K++ 
Sbjct: 255 DEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGINDSDADARRLVKLIS 314

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIP+KINLIPFN WPG  Y  S  + I  F++ I ++GY+SPIRTPRG DI+AACGQLKS
Sbjct: 315 GIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPRGEDIMAACGQLKS 374

Query: 368 LSKRIPKVPRQEMQITG 384
            ++R  K   Q    TG
Sbjct: 375 ATERARKSRAQIAAETG 391


>gi|119385232|ref|YP_916288.1| radical SAM protein [Paracoccus denitrificans PD1222]
 gi|205829795|sp|A1B4Z8|RLMN_PARDP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|119374999|gb|ABL70592.1| 23S rRNA m(2)A-2503 methyltransferase [Paracoccus denitrificans
           PD1222]
          Length = 391

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/366 (56%), Positives = 276/366 (75%), Gaps = 14/366 (3%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ RE+L EAL++ G P+R  RMR  QIW+WIY  G+RDF  M++++++ R LL ++
Sbjct: 24  NLVGLTREQLHEALIQAGTPERQARMRVGQIWQWIYHWGVRDFAQMTNLAKDYRALLAEN 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PEIV  +IS DGTRK+LLR     I G  E+ETVYIPE++RGTLC+SSQVGC+LT
Sbjct: 84  FEIALPEIVTRQISADGTRKYLLR-----ISGGHEVETVYIPEENRGTLCISSQVGCTLT 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIVMM 185
           CSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P  G    E        R +SN+V+M
Sbjct: 139 CSFCHTGTQKLVRNLTAGEIVGQVMVARDDLGEWPKPGAPKDET-------RLVSNVVLM 191

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ +  D  G+S S+RRITLSTSG VP IA+  EEIG +LA+S HA
Sbjct: 192 GMGEPLYNFDNVRDAMKVVMDGEGISLSRRRITLSTSGIVPEIAKTAEEIGCLLAVSFHA 251

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++ R+ LVP+NRK+ +E L++A R YP LSN+ RITFEYVML G+NDS  DA  L+++
Sbjct: 252 TTDETRDKLVPVNRKWNIETLLNALREYPRLSNSERITFEYVMLDGVNDSDEDARRLVRL 311

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIPAK+NLIPFN WPG  Y  S  + I  F++ + ++GY+SPIRTPRG DI+AACGQL
Sbjct: 312 IRGIPAKVNLIPFNEWPGSPYRRSGWERIEAFADIVHKAGYASPIRTPRGEDIMAACGQL 371

Query: 366 KSLSKR 371
           KS ++R
Sbjct: 372 KSATER 377


>gi|77464959|ref|YP_354463.1| radical SAM superfamily protein [Rhodobacter sphaeroides 2.4.1]
 gi|126460828|ref|YP_001041942.1| radical SAM protein [Rhodobacter sphaeroides ATCC 17029]
 gi|221640880|ref|YP_002527142.1| Radical SAM enzyme, Cfr family [Rhodobacter sphaeroides KD131]
 gi|332559858|ref|ZP_08414180.1| Radical SAM enzyme, Cfr family protein [Rhodobacter sphaeroides
           WS8N]
 gi|123757738|sp|Q3IY22|RLMN_RHOS4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829867|sp|A3PFQ4|RLMN_RHOS1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807200|sp|B9KQP1|RLMN_RHOSK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|77389377|gb|ABA80562.1| radical SAM superfamily protein [Rhodobacter sphaeroides 2.4.1]
 gi|126102492|gb|ABN75170.1| radical SAM enzyme, Cfr family [Rhodobacter sphaeroides ATCC 17029]
 gi|221161661|gb|ACM02641.1| Radical SAM enzyme, Cfr family [Rhodobacter sphaeroides KD131]
 gi|332277570|gb|EGJ22885.1| Radical SAM enzyme, Cfr family protein [Rhodobacter sphaeroides
           WS8N]
          Length = 392

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/377 (54%), Positives = 276/377 (73%), Gaps = 10/377 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++G+ REEL  AL+  G P+R  +MR  Q+W+W+Y  G+RDF  M++++++ R LL +H
Sbjct: 25  NIVGLTREELLAALVAAGTPERQAKMRAGQVWQWVYHWGVRDFAQMTNLAKDYRALLAEH 84

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F+I+ PE+V  +IS DGTRK+L+R     I G  E+ETVYIPE+ RGTLCVSSQVGC+LT
Sbjct: 85  FAIVLPEVVTRQISADGTRKYLIR-----IAGGHEVETVYIPEEGRGTLCVSSQVGCTLT 139

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ Q++L R  LG++P     E        R +SN+V+MGM
Sbjct: 140 CSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWP-----ERGAPKDETRLVSNLVLMGM 194

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ +  D  GLS S+RRITLSTSG VP IAR  EEIG  LAIS HA +
Sbjct: 195 GEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATT 254

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R+ILVPIN+++ +  L+D+ R YP LSN+ RITFEYVML G+ND+  DA  L+K++ 
Sbjct: 255 DEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVNDTDADARRLVKLIS 314

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIP+KINLIPFN WPG  Y  S  + I  F++ I ++GY+SPIRTPRG DI+AACGQLKS
Sbjct: 315 GIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPRGEDIMAACGQLKS 374

Query: 368 LSKRIPKVPRQEMQITG 384
            ++R  K   Q    TG
Sbjct: 375 ATERARKSRAQIAAETG 391


>gi|84683986|ref|ZP_01011888.1| radical SAM superfamily protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667739|gb|EAQ14207.1| radical SAM superfamily protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 394

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/371 (56%), Positives = 272/371 (73%), Gaps = 9/371 (2%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L K +L+G+ R+ L +AL+  G P++  +MR  Q+W+WIY +G+RDF  M+++S++ R L
Sbjct: 22  LGKPNLVGLTRDGLRDALIAAGTPEKQAKMRVGQVWQWIYQKGVRDFADMTNLSKDYRAL 81

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+QHF I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLCVSSQVG
Sbjct: 82  LDQHFEIRVPELVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQVG 136

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTCSFC+TGTQKLVRNLTA EI+ Q+++AR  L D+       G  +    R +SNIV
Sbjct: 137 CTLTCSFCHTGTQKLVRNLTAGEIVGQIMMARDDLEDWVPA----GKGMGERPRLVSNIV 192

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NFD V+ ++ IA D  G+S S+RRITLSTSG VP IAR G EIG MLAIS 
Sbjct: 193 LMGMGEPLYNFDAVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIARAGAEIGCMLAISF 252

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  ++ R+ LVPIN+K+ +E L+ A + YP LSN+ RITFEYVML G+NDS  DA  LI
Sbjct: 253 HATDDETRDKLVPINKKWNIEKLLAALKEYPKLSNSERITFEYVMLDGVNDSDEDARRLI 312

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+++GIPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIRTPRG DI+AACG
Sbjct: 313 KLIEGIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRTPRGEDIMAACG 372

Query: 364 QLKSLSKRIPK 374
           QLKS ++R  K
Sbjct: 373 QLKSETERARK 383


>gi|288957012|ref|YP_003447353.1| radical SAM enzyme [Azospirillum sp. B510]
 gi|288909320|dbj|BAI70809.1| radical SAM enzyme [Azospirillum sp. B510]
          Length = 396

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/367 (57%), Positives = 268/367 (73%), Gaps = 18/367 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +++L+G+ REELE  +L +G+     + R  Q+W WIY RG  DF  M+ +++ VR  L 
Sbjct: 27  RKNLVGLSREELEAEMLAVGLE----KFRARQLWHWIYHRGSTDFAEMTTLAKPVREKLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  P +V +  S DGTRKWLLR P        E+E+V+IPE+ RGTLCVSSQVGC+
Sbjct: 83  DTHIVARPTVVTDLKSADGTRKWLLRMP-----DGQEVESVHIPEEDRGTLCVSSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTC FC+TGTQ+LVRNL A EI+ QV+LAR +LG++P          P  GR +SNIVMM
Sbjct: 138 LTCRFCHTGTQRLVRNLDAAEIVAQVMLARDMLGEWPA---------PPDGRMLSNIVMM 188

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N+DNV K+L I  D  G+S SKRRITLSTSG VP + R G+E+ V LA+SLHA
Sbjct: 189 GMGEPLFNYDNVAKALKIVMDGDGISISKRRITLSTSGVVPMMERCGQELNVNLAVSLHA 248

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V+++LRNI++PINRKYPL  L++ACR YPGLSNARRITFEYVMLKG+ND+P DA  L+K+
Sbjct: 249 VTDELRNIIMPINRKYPLRELMEACRTYPGLSNARRITFEYVMLKGVNDTPADARALVKL 308

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFN WPG  Y  S  + I  F + +  +GY+SP+RTPRG DI+AACGQL
Sbjct: 309 LEGIPAKINLIPFNEWPGAPYERSTARAIQLFGDIVNNAGYASPVRTPRGEDIMAACGQL 368

Query: 366 KSLSKRI 372
           KS S R+
Sbjct: 369 KSASLRL 375


>gi|126729978|ref|ZP_01745790.1| hypothetical protein SSE37_16408 [Sagittula stellata E-37]
 gi|126709358|gb|EBA08412.1| hypothetical protein SSE37_16408 [Sagittula stellata E-37]
          Length = 394

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/376 (55%), Positives = 281/376 (74%), Gaps = 9/376 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R  L +ALL +G P++ V+MR +Q+W+W+Y  G+RDF  M++++++ R  L+
Sbjct: 22  KINLVGLTRAGLRDALLAMGTPEKQVKMRVNQVWQWVYFWGVRDFDSMTNLAKDYRAKLD 81

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F I  PEIV +++S DGTRK+L+R     I G  E+ETVYIPE+ RGTLCVSSQVGC+
Sbjct: 82  ATFEIALPEIVSKQVSADGTRKYLVR-----IAGGHEVETVYIPEEDRGTLCVSSQVGCT 136

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ Q++LAR  LG++P      G   P   R +SNIV+M
Sbjct: 137 LTCSFCHTGTQKLVRNLTAGEIVGQIMLARDDLGEWPEPGTGTGEQGP---RLLSNIVLM 193

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ IA D  GLS S+RRITLSTSG VP IA+  EEIG ++A+S HA
Sbjct: 194 GMGEPLYNFDNVRDAMKIAMDHEGLSMSRRRITLSTSGVVPEIAKCAEEIGCLMAVSFHA 253

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN LVPIN+++ +  L+DA R YP LSN+ RITFEYVMLK +NDS  DA  L+++
Sbjct: 254 TTDEVRNKLVPINKRWNIATLLDALREYPRLSNSERITFEYVMLKDVNDSDEDARRLVRL 313

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           + GIPAKINLIPFN WPG  Y  SD   I  F++ + ++GY+SPIRTPRG DI+AACGQL
Sbjct: 314 IAGIPAKINLIPFNEWPGSPYERSDWSRIERFADIVYKAGYASPIRTPRGEDIMAACGQL 373

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS ++R  K  R+E++
Sbjct: 374 KSATERSRK-SRKEIE 388


>gi|294675798|ref|YP_003576413.1| radical SAM family protein [Rhodobacter capsulatus SB 1003]
 gi|294474618|gb|ADE84006.1| radical SAM family protein [Rhodobacter capsulatus SB 1003]
          Length = 393

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/369 (55%), Positives = 280/369 (75%), Gaps = 10/369 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R++L +AL+  G P++  +MR  Q+W+WIY  G+RDF  M++++++ R LL+
Sbjct: 24  KVNLVGLTRDQLRDALIAAGTPEKQAKMRVGQVWQWIYHWGVRDFGAMTNLAKDYRALLD 83

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  PE+V  ++S DGTRK+LLR     I G  E+E VYIPE++RGTLC+SSQVGC+
Sbjct: 84  RHFEIALPEVVTCQVSMDGTRKYLLR-----IAGGHEVEAVYIPEENRGTLCISSQVGCT 138

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P   + +        R ISN+V+M
Sbjct: 139 LTCSFCHTGTQKLVRNLTAGEIVGQVMVARDDLGEWPVPGEPKDET-----RLISNVVLM 193

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV+ ++ +  D+ GL+ S+RRITLSTSG VP IAR  EEIG +LAIS HA
Sbjct: 194 GMGEPLYNFENVRDAMQVVMDNEGLTLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 253

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +R+ LVP+N+K+ ++ L+DA R YP LSN+ RITFEYVMLKG+NDS  DA  L+++
Sbjct: 254 TTDAVRDKLVPVNKKWNIKTLLDALRDYPRLSNSERITFEYVMLKGVNDSDDDARRLVRL 313

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIPAKINLIPFN WPG  Y  SD + I  F++ + ++GY++PIRTPRG DI+AACGQL
Sbjct: 314 IQGIPAKINLIPFNEWPGSPYKRSDWERIEAFADIVYKAGYAAPIRTPRGEDIMAACGQL 373

Query: 366 KSLSKRIPK 374
           KS ++R  K
Sbjct: 374 KSATERARK 382


>gi|260429104|ref|ZP_05783081.1| radical SAM enzyme, Cfr family [Citreicella sp. SE45]
 gi|260419727|gb|EEX12980.1| radical SAM enzyme, Cfr family [Citreicella sp. SE45]
          Length = 398

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/379 (54%), Positives = 279/379 (73%), Gaps = 8/379 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +++G+ R+ L  AL+++G P++  +MR +Q+W+WIY  G+RDF  M++++++ R  L 
Sbjct: 23  KLNIVGLTRDALRAALIEMGTPEKQAKMRVNQVWQWIYHWGVRDFSVMTNLAKDYRAKLE 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HF I  PEIV +++S DGTRK+L+R     I G  E+ETVYIPE+ RGTLC+SSQVGC+
Sbjct: 83  AHFEIALPEIVSKQVSADGTRKYLVR-----IAGGHEVETVYIPEEGRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ QV+LAR  L ++P      G   P   R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAGEIVGQVMLARDDLDEWPAPGTGTGEDGP---RLLSNIVLM 194

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ I  D  G++ S+RRITLSTSG VP IAR  EEIG ++A+S HA
Sbjct: 195 GMGEPLYNFDNVRDAMKIVMDGEGIALSRRRITLSTSGVVPEIARCAEEIGCLMAVSFHA 254

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN LVPIN+++ +E L++A R YP LSN+ RITFEYVMLK +NDS  DA  L+ +
Sbjct: 255 TTDEVRNRLVPINKRWNIEELLNALREYPRLSNSERITFEYVMLKDVNDSDADARRLVNL 314

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAKINLIPFN WPG  Y  SD + I  F++ + ++GY+SPIRTPRG DI+AACGQL
Sbjct: 315 IKGIPAKINLIPFNEWPGAPYERSDWERIERFADIVHKAGYASPIRTPRGEDIMAACGQL 374

Query: 366 KSLSKRIPKVPRQEMQITG 384
           KS ++R  K   Q    TG
Sbjct: 375 KSATERARKSRAQIAAETG 393


>gi|119713561|gb|ABL97613.1| radical SAM superfamily protein [uncultured marine bacterium
           EB0_39F01]
          Length = 390

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/371 (55%), Positives = 279/371 (75%), Gaps = 13/371 (3%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++IG+ R+ L  AL +IG P + ++MRT+QIW+W+YV+G ++F+ M+++S++ R+LL Q+
Sbjct: 25  NIIGLQRKALANALNEIGTPAKQIKMRTAQIWQWLYVKGAQNFEEMTNLSKDFRNLLVQN 84

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F+I  PEIV  +IS DGTRK+LLR     + G  E+E VYIPEK RGTLC+SSQ+GC+LT
Sbjct: 85  FAITRPEIVTRQISKDGTRKYLLR-----VTGGHEVEAVYIPEKDRGTLCISSQIGCTLT 139

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC+TGTQKLVRNLT  EI+ Q+L+AR  L ++ G +           R +SNIV+MGM
Sbjct: 140 CTFCHTGTQKLVRNLTPAEIVGQILIARDDLDEW-GKD-------AGQKRNVSNIVLMGM 191

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N DNV+ ++ IA D+ G++ S+RRITLSTSG VP I R G EIG MLAIS HA +
Sbjct: 192 GEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGVVPEIIRTGSEIGCMLAISFHATT 251

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R++LVPINRK+ +  L++ACR+YP LSN+ RITFEYVMLK INDS  DA  L+ ++ 
Sbjct: 252 DEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITFEYVMLKNINDSDEDARRLVDLIS 311

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFNPWPG  Y  SD   I  F + + ++GY+SPIR PRG DI+AACGQLKS
Sbjct: 312 GIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKAGYASPIRRPRGEDIMAACGQLKS 371

Query: 368 LSKRIPKVPRQ 378
            ++R+ K  +Q
Sbjct: 372 ETQRVRKSAKQ 382


>gi|114769816|ref|ZP_01447426.1| radical SAM superfamily protein [alpha proteobacterium HTCC2255]
 gi|114549521|gb|EAU52403.1| radical SAM superfamily protein [alpha proteobacterium HTCC2255]
          Length = 390

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/371 (55%), Positives = 279/371 (75%), Gaps = 13/371 (3%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++IG+ R+ L  AL +IG P + ++MRT+QIW+W+YV+G ++F+ M+++S++ R+LL Q+
Sbjct: 25  NIIGLQRKALANALNEIGTPAKQIKMRTAQIWQWLYVKGAQNFEEMTNLSKDFRNLLVQN 84

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F+I  PEIV  +IS DGTRK+LLR     + G  E+E VYIPEK RGTLC+SSQ+GC+LT
Sbjct: 85  FAITRPEIVTRQISKDGTRKYLLR-----VTGGHEVEAVYIPEKDRGTLCISSQIGCTLT 139

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC+TGTQKLVRNLT  EI+ Q+L+AR  L ++ G +           R +SNIV+MGM
Sbjct: 140 CTFCHTGTQKLVRNLTPAEIVGQILIARDDLDEW-GKD-------AGQKRNVSNIVLMGM 191

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N DNV+ ++ IA D+ G++ S+RRITLSTSG VP I R G EIG MLAIS HA +
Sbjct: 192 GEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGVVPEIIRTGSEIGCMLAISFHATT 251

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R++LVPINRK+ +  L++ACR+YP LSN+ RITFEYVMLK INDS  DA  L+ ++ 
Sbjct: 252 DEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITFEYVMLKNINDSDEDARRLVDLIS 311

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFNPWPG  Y  SD   I  F + + ++GY+SPIR PRG DI+AACGQLKS
Sbjct: 312 GIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKAGYASPIRRPRGEDIMAACGQLKS 371

Query: 368 LSKRIPKVPRQ 378
            ++R+ K  +Q
Sbjct: 372 ETQRVRKSAKQ 382


>gi|126733857|ref|ZP_01749604.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2]
 gi|126716723|gb|EBA13587.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2]
          Length = 391

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/378 (54%), Positives = 273/378 (72%), Gaps = 10/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++LIG+ R+++ +AL+ +G  ++  +MR  QIW+WIY  G+RDF  M+++S++ R +L +
Sbjct: 23  QNLIGLSRDQMRDALIAVGTAEKQAKMRVGQIWQWIYHWGVRDFSAMTNLSKDYRAMLAE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F I  PE+V  ++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+L
Sbjct: 83  TFVIALPEVVTRQVSDDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTL 137

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QV++AR  L ++P     E        R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMIARDDLDEWP-----EPGTRTEDTRLLSNIVLMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IAR  +EIG  LA+S HA 
Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCQLAVSFHAT 252

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +ND+R+ LVPIN+++P+  L+DA R YP +SN+ RITFEYVML G+NDS  DA  LIK++
Sbjct: 253 TNDVRDRLVPINKRWPISDLLDALREYPKVSNSERITFEYVMLDGVNDSDEDAHRLIKLI 312

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +GIPAKINLIPFN WPG  Y  S    I  FSE I ++GY+SP+R PRG DI+AACGQLK
Sbjct: 313 EGIPAKINLIPFNEWPGAPYKRSSNNRIRKFSEIIYQAGYASPVRKPRGEDIMAACGQLK 372

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K   Q  Q  G
Sbjct: 373 SATERARKSKAQIAQEAG 390


>gi|84515768|ref|ZP_01003129.1| radical SAM superfamily protein [Loktanella vestfoldensis SKA53]
 gi|84510210|gb|EAQ06666.1| radical SAM superfamily protein [Loktanella vestfoldensis SKA53]
          Length = 392

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/377 (54%), Positives = 274/377 (72%), Gaps = 10/377 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+GM R+ + +AL+  G P++  +MR  QIW+W+Y  G+RDF  M++++++ R +L  +
Sbjct: 25  NLVGMTRDGMRDALIAAGTPEKQAKMRVGQIWQWVYHWGVRDFAKMTNLAKDYRAMLADN 84

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +  PE+V  ++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+LT
Sbjct: 85  FVVALPEVVTRQVSGDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTLT 139

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QVL+AR  LG++P    ++G     V R +SNIV+MGM
Sbjct: 140 CSFCHTGTQKLVRNLTAAEIIGQVLVARDDLGEWP----VQGTPKDEV-RLLSNIVLMGM 194

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP IAR  +EIG  LAIS HA +
Sbjct: 195 GEPLYNFENVRDAMKIAMDPDGIQLSRRRITLSTSGVVPEIARTAQEIGCQLAISFHATT 254

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R+ LVPIN+++PL  L+DA R YP +SN+ RITFEYVML G+NDS  DA  LIK++ 
Sbjct: 255 DEVRDKLVPINKRWPLADLLDALRTYPKVSNSERITFEYVMLDGVNDSDADAHRLIKLID 314

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIRTPRG DI+AACGQLKS
Sbjct: 315 GIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLKS 374

Query: 368 LSKRIPKVPRQEMQITG 384
            ++R  K   Q  Q  G
Sbjct: 375 ATERARKSKAQIAQEAG 391


>gi|149201312|ref|ZP_01878287.1| hypothetical protein RTM1035_16842 [Roseovarius sp. TM1035]
 gi|149145645|gb|EDM33671.1| hypothetical protein RTM1035_16842 [Roseovarius sp. TM1035]
          Length = 392

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/364 (55%), Positives = 271/364 (74%), Gaps = 9/364 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ R+ L E L+  G P++  +MR +QIW+WIY  G+RDF  M+++++  R  L ++
Sbjct: 24  NLVGLTRDALREVLIAHGTPEKQAKMRVNQIWQWIYQWGVRDFHAMTNLAKAYRAQLAEN 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+LT
Sbjct: 84  FVVTIPEVVSKQVSADGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTLT 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV+LAR  L ++P   +  G       R ISNIV+MGM
Sbjct: 139 CSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPKPGEPAG----ERPRLISNIVLMGM 194

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NFDNV+ ++ IA D  G+S S+RRITLSTSG VP IA+  EEIG +LA+S HA +
Sbjct: 195 GEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAEEIGCLLAVSFHATT 254

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R+ LVPIN+++ +  L+D  R YP LSN+ RITFEYVMLKG+NDS  DA  L++++K
Sbjct: 255 DEVRDTLVPINKRWNIATLLDTLREYPRLSNSERITFEYVMLKGVNDSDADARRLVQLIK 314

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  Y  SD + I  F++ I ++GY+SPIRTPRG DI+AACGQLKS
Sbjct: 315 GIPAKINLIPFNEWPGSPYQRSDWERIERFADIIYKAGYASPIRTPRGEDIMAACGQLKS 374

Query: 368 LSKR 371
            ++R
Sbjct: 375 ATER 378


>gi|114762064|ref|ZP_01441532.1| radical SAM superfamily protein [Pelagibaca bermudensis HTCC2601]
 gi|114545088|gb|EAU48091.1| radical SAM superfamily protein [Roseovarius sp. HTCC2601]
          Length = 398

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/379 (54%), Positives = 278/379 (73%), Gaps = 8/379 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ RE L  AL+++G P++  +MR +QIW+W+Y  G+RDF  M+++++E R  L+
Sbjct: 23  KLNLVGLTREALRAALIEMGTPEKQAKMRVNQIWQWVYHWGVRDFAEMTNLAKEYRAKLD 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HF I+ PEIV + +S DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 83  AHFEILLPEIVSKNVSVDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ Q++LAR  L ++    +          R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAGEIVGQIMLARDDLDEW---PEPGTGTGEGGPRLLSNIVLM 194

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ IA D  G++ S+RRITLSTSG VP IA+  +EIG ++A+S HA
Sbjct: 195 GMGEPLYNFDNVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIAKCAKEIGCLMAVSFHA 254

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN LVPIN+++ +E L++A R YP LSN+ RITFEYVMLK +NDS  DA  L+ +
Sbjct: 255 TTDEVRNKLVPINKRWNIETLLNALREYPRLSNSERITFEYVMLKDVNDSDADARRLVNL 314

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAKINLIPFN WPG  Y  SD + I  F++ + ++GY+SPIRTPRG DI+AACGQL
Sbjct: 315 IKGIPAKINLIPFNEWPGAPYQRSDWERIERFADIVYKAGYASPIRTPRGEDIMAACGQL 374

Query: 366 KSLSKRIPKVPRQEMQITG 384
           KS ++R  K   Q    TG
Sbjct: 375 KSATERARKSRAQIAAETG 393


>gi|161170314|gb|ABX59284.1| predicted FeS cluster redox protein [uncultured marine bacterium
           EB000_55B11]
 gi|297183841|gb|ADI19964.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 390

 Score =  427 bits (1099), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/371 (55%), Positives = 278/371 (74%), Gaps = 13/371 (3%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++IG+ R+ L  AL +IG P + ++MRT+QIW+W+YV+G ++F+ M+++S++ R+LL Q+
Sbjct: 25  NIIGLQRKALANALNEIGTPAKQIKMRTAQIWQWLYVKGAQNFEEMTNLSKDFRNLLVQN 84

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F+I  PEIV  +IS DGTRK+LLR     + G  E+E VYIPEK RGTLC+SSQ+GC+LT
Sbjct: 85  FAITRPEIVTRQISKDGTRKYLLR-----VTGGHEVEAVYIPEKDRGTLCISSQIGCTLT 139

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC+TGTQKLVRNLT  EI+ Q+L+AR  L ++ G +           R +SNIV+MGM
Sbjct: 140 CTFCHTGTQKLVRNLTPAEIVGQILIARDDLDEW-GKD-------AGQKRNVSNIVLMGM 191

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N DNV+ ++ IA D+ G++ S+RRITLSTSG VP I R G EIG MLAIS HA +
Sbjct: 192 GEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGVVPEIIRTGSEIGCMLAISFHATT 251

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R++LVPINRK+ +  L++ACR+YP LSN+ RITFEYVMLK INDS  DA  L+ ++ 
Sbjct: 252 DEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITFEYVMLKNINDSDEDARRLVDLIS 311

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFNPWPG  Y  SD   I  F + + ++GY+SPIR PRG DI+AA GQLKS
Sbjct: 312 GIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKAGYASPIRRPRGEDIMAAXGQLKS 371

Query: 368 LSKRIPKVPRQ 378
            ++R+ K  +Q
Sbjct: 372 ETQRVRKSAKQ 382


>gi|84500532|ref|ZP_00998781.1| radical SAM superfamily protein [Oceanicola batsensis HTCC2597]
 gi|84391485|gb|EAQ03817.1| radical SAM superfamily protein [Oceanicola batsensis HTCC2597]
          Length = 398

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/370 (54%), Positives = 277/370 (74%), Gaps = 18/370 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +++G+ RE L +AL+ +G P++  RMR +Q+W+WIY  G+RDF  M++++++ R  L 
Sbjct: 24  KPNIVGLTREALRQALIDMGTPEKQARMRVNQVWQWIYHWGVRDFSQMTNLARDYRGKLT 83

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V +++S DGTRK+L+R     I G  E+ETVYIPE  RGTLC+SSQVGC+
Sbjct: 84  ETFRIDLPEMVSKQVSADGTRKYLMR-----IAGGHEVETVYIPEADRGTLCISSQVGCT 138

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK----ISN 181
           LTCSFC+TGTQ+LVRNL+A+EI+ Q+++AR  LG++P         +P   ++    +SN
Sbjct: 139 LTCSFCHTGTQRLVRNLSADEIVGQIMVARDDLGEWP---------VPGAPKREERLLSN 189

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV+MGMGEPL NFDNV+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG +LA+
Sbjct: 190 IVLMGMGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIARCAEEIGCLLAV 249

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           S HA ++++R+ LVPIN+++ +E L+ A R YP LSN+ RITFEYVMLK +NDS  DA  
Sbjct: 250 SFHATTDEVRDRLVPINKRWNIETLLTALRDYPRLSNSERITFEYVMLKDVNDSDADARR 309

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+K++ GIPAKINLIPFN WPG  Y  SD   I +F++ + ++GY+SPIRTPRG DI+AA
Sbjct: 310 LVKLISGIPAKINLIPFNEWPGAPYERSDWSRIESFADIVHKAGYASPIRTPRGEDIMAA 369

Query: 362 CGQLKSLSKR 371
           CGQLKS ++R
Sbjct: 370 CGQLKSATER 379


>gi|310817045|ref|YP_003965009.1| Ribosomal RNA large subunit methyltransferase N [Ketogulonicigenium
           vulgare Y25]
 gi|308755780|gb|ADO43709.1| Ribosomal RNA large subunit methyltransferase N [Ketogulonicigenium
           vulgare Y25]
          Length = 409

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/368 (54%), Positives = 274/368 (74%), Gaps = 10/368 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+GM R+++ +A++ IG+P++  +MR  Q+W+WIYV G+RDF  M+++++++R  L + 
Sbjct: 38  NLVGMTRDQMRQAMIDIGVPEKQAKMRMGQLWQWIYVWGVRDFALMTNLAKDLRAKLAET 97

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           + +  PE+V  ++S DGTRK+L+R     I G  E+E VYIPE  RGTLCVSSQVGC+LT
Sbjct: 98  YVLAVPEVVTRQVSEDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCVSSQVGCTLT 152

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVMMG 186
           CSFC+TGTQKLVRNLT  EI+ QV++AR  LG++P      G  +  +G R++SNIV+MG
Sbjct: 153 CSFCHTGTQKLVRNLTTAEIVGQVMVARDDLGEWPH----PGQDVSELGPRRLSNIVLMG 208

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ I  D  G+  S+RRITLSTSG VP IAR   EIG  LA+S HA 
Sbjct: 209 MGEPLYNFENVRDAMKICMDPEGIQLSRRRITLSTSGIVPEIARTAVEIGCQLAVSFHAT 268

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++D+RN+LVP+NRK+ +E L+ A R YP LSN+ RITFEYVML+G+NDS  DA  L++++
Sbjct: 269 TDDVRNVLVPVNRKWNIEALLTALREYPALSNSERITFEYVMLRGVNDSDDDARRLVELI 328

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +GIPAKINLIPFN WPG  Y  S +  I  F + + R+GY+SP+R PRG DI+AACGQLK
Sbjct: 329 RGIPAKINLIPFNEWPGSPYQRSTKARIEAFGDIVNRAGYASPVRRPRGEDIMAACGQLK 388

Query: 367 SLSKRIPK 374
           S ++R  K
Sbjct: 389 SATERARK 396


>gi|86139440|ref|ZP_01058009.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. MED193]
 gi|85823943|gb|EAQ44149.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. MED193]
          Length = 395

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/373 (54%), Positives = 272/373 (72%), Gaps = 9/373 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM R+ + +AL+ IG+P++  +MR  QIW+WIY  G RDF  M+++S+ +R  L 
Sbjct: 23  KTNLVGMTRDAMRQALVGIGVPEKQAKMRVGQIWQWIYQWGKRDFSEMTNLSKALRAQLE 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+
Sbjct: 83  EGFEIAIPEVVSKQVSEDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ QV++AR  L ++P    + G   P   R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAAEIIGQVMMARDDLDEWP----VPGTRNPDEARLLSNIVLM 193

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ IA D  G+  S+RRITLSTSG VP IAR  +EIG +LA+S HA
Sbjct: 194 GMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAQEIGCLLAVSFHA 253

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ LVPIN+++ +E L++A R YP L+N+ RITFEYVML  +NDS  DA  L+K+
Sbjct: 254 TTDEVRDKLVPINKRWNIEALLEALRAYPRLANSERITFEYVMLDHVNDSKEDAHRLVKL 313

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIPAKINLIPFN WPG  Y  S    I  F++ I  +GY+SPIR PRG DI+AACGQL
Sbjct: 314 IEGIPAKINLIPFNEWPGSPYQRSSNNRIHAFADIIHDAGYASPIRKPRGEDIMAACGQL 373

Query: 366 KSLSKRIPKVPRQ 378
           KS ++R  K  +Q
Sbjct: 374 KSATERARKSRKQ 386


>gi|85706112|ref|ZP_01037207.1| radical SAM superfamily protein [Roseovarius sp. 217]
 gi|85669276|gb|EAQ24142.1| radical SAM superfamily protein [Roseovarius sp. 217]
          Length = 392

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/367 (55%), Positives = 271/367 (73%), Gaps = 9/367 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ R+ L EAL+  G P++  +MR +QIW+WIY  G+RDF  M+++++  R  L ++
Sbjct: 24  NLVGLTRDALREALIAHGTPEKQAKMRVNQIWQWIYQWGVRDFHAMTNLAKAYRAQLAEN 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+LT
Sbjct: 84  FVVTIPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTLT 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV+LAR  L ++P      G  +    R ISNIV+MGM
Sbjct: 139 CSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPR----PGEPVGERPRLISNIVLMGM 194

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NFDNV+ ++ IA D  G+S S+RRITLSTSG VP IA+  +EIG +LA+S HA +
Sbjct: 195 GEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAQEIGCLLAVSFHATT 254

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           + +R+ LVPIN+K+ +  L+D  R YP LSN+ RITFEYVMLK +NDS  DA  L++++K
Sbjct: 255 DAVRDALVPINKKWNIATLLDTLRDYPRLSNSERITFEYVMLKDVNDSDADARRLVQLIK 314

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  Y  SD+  I  F++ I ++GY+SPIRTPRG DI+AACGQLKS
Sbjct: 315 GIPAKINLIPFNEWPGSPYERSDRDRIQRFADIIYKAGYASPIRTPRGEDIMAACGQLKS 374

Query: 368 LSKRIPK 374
            ++R  K
Sbjct: 375 ATERARK 381


>gi|315497788|ref|YP_004086592.1| radical sam enzyme, cfr family [Asticcacaulis excentricus CB 48]
 gi|315415800|gb|ADU12441.1| radical SAM enzyme, Cfr family [Asticcacaulis excentricus CB 48]
          Length = 411

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/381 (53%), Positives = 277/381 (72%), Gaps = 16/381 (4%)

Query: 6   KESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           K ++ G+ R+ L  AL + G+  +R  +MR  QIW+W++  G  DF  M+DI ++ R  L
Sbjct: 16  KVNITGLTRDGLIAALKESGVVEERKAKMRAQQIWRWVHHYGFTDFDKMTDIGKDQRGPL 75

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVG 123
           ++ F++  PE+V+ ++S DGTRKWL+R     +   +E+ETVYIP+  R G LCVSSQVG
Sbjct: 76  SEKFTLARPEVVERQVSKDGTRKWLIR-----MAPGIEVETVYIPDVGRSGALCVSSQVG 130

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L CSFC+TGTQ+LVRNLTA EI+ QV +AR  LG++P          P   R++SNIV
Sbjct: 131 CTLNCSFCHTGTQRLVRNLTAAEIVAQVQVARDDLGEWPS---------PKEDRRLSNIV 181

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N DNV  ++ I SD+ G++ S+RRIT+STSG VP +  +G+    MLAISL
Sbjct: 182 FMGMGEPLYNLDNVADAIDIISDNEGIAISRRRITVSTSGVVPELDALGKRTAAMLAISL 241

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR++LVPIN+KYPL+ L+ A R YP LSNARR+TFEYVMLKG+NDSP +A  LI
Sbjct: 242 HATNDELRDVLVPINKKYPLKDLMAAIRAYPDLSNARRVTFEYVMLKGVNDSPAEARELI 301

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K++KGIPAKINLIPFNPWPG +Y CSD + I  F+  + ++GY+SPIRTPRG DILAACG
Sbjct: 302 KLIKGIPAKINLIPFNPWPGTDYQCSDWRTIEAFAAILNKAGYASPIRTPRGRDILAACG 361

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QLKS S+++     ++ Q+ G
Sbjct: 362 QLKSESEKVRASALRKAQVEG 382


>gi|209965840|ref|YP_002298755.1| radical SAM enzyme, Cfr family [Rhodospirillum centenum SW]
 gi|209959306|gb|ACI99942.1| radical SAM enzyme, Cfr family [Rhodospirillum centenum SW]
          Length = 399

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/364 (56%), Positives = 268/364 (73%), Gaps = 17/364 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ RE+LE    + G      + R  Q+W+WIY RG+ DF  M+++++  R  L +H
Sbjct: 20  NLVGLSREDLEAEFARAGFE----KFRARQVWQWIYNRGVTDFAAMTNLAKPARERLAEH 75

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           + I  P  V +  S DGTRKWL R PA       EIETV+IPE+ RGTLCVSSQVGC++T
Sbjct: 76  YVIERPLAVKDLQSDDGTRKWLCRMPA----DGQEIETVHIPEEDRGTLCVSSQVGCTMT 131

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC+TGTQ+LVRNLT+ EI+ QV+LAR  LG++P          P+ GR +SNIVMMGM
Sbjct: 132 CRFCHTGTQRLVRNLTSAEIVGQVMLARDHLGEWPS---------PAEGRMLSNIVMMGM 182

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N++NV ++L I  D  G++ SKRRITLSTSG VP + R G E+GV LA+SLHAV+
Sbjct: 183 GEPLFNYENVARALKIVMDGEGIAISKRRITLSTSGVVPMMRRCGAELGVNLAVSLHAVT 242

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           ++LRN +VPIN+KYP+  L+DA R YPGL+NARR+T+EYVMLKG+NDS  DA  L+++++
Sbjct: 243 DELRNRIVPINKKYPIAELMDAVRTYPGLNNARRVTWEYVMLKGVNDSLADARALVRLIR 302

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIP+KINLIPFNPWPG  + CSD   IV FS+ +  +GY+SPIR PRG DI+AACGQLKS
Sbjct: 303 GIPSKINLIPFNPWPGAPFECSDWDQIVRFSDFVNDAGYASPIRAPRGKDIMAACGQLKS 362

Query: 368 LSKR 371
            S+R
Sbjct: 363 ESQR 366


>gi|89070636|ref|ZP_01157916.1| radical SAM superfamily protein [Oceanicola granulosus HTCC2516]
 gi|89043783|gb|EAR49985.1| radical SAM superfamily protein [Oceanicola granulosus HTCC2516]
          Length = 392

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/369 (55%), Positives = 272/369 (73%), Gaps = 8/369 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + +L+G+ R  L EAL   G P + VRMR +Q+W+WIY  G+RDF+ M+++++  R LL 
Sbjct: 23  RTNLVGLTRPALAEALRAAGTPDKQVRMRVNQVWQWIYHWGVRDFEAMTNLAKPYRALLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F I  PEIV  ++S DGTRK+L+R     I G  E+ETVYIPE+ RGTLC+SSQVGC+
Sbjct: 83  ENFEIALPEIVSRQVSNDGTRKYLVR-----IAGGHEVETVYIPEEDRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT  EI+ Q++LAR  LG++P      G   P   R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIVGQIMLARDDLGEWPAPGTGTGESGP---RLLSNIVLM 194

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFD V+ ++ IA D  G++ S+RRITLSTSG V  IAR  EEIG MLA+S HA
Sbjct: 195 GMGEPLYNFDAVRDAMKIAMDGEGIALSRRRITLSTSGVVAEIARCAEEIGCMLAVSFHA 254

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ LVPIN+K+ +E L+++ + YP LSN+ RITFEYVMLK +NDS  DA  L+K+
Sbjct: 255 TTDEVRDRLVPINKKWNIETLLESLKAYPKLSNSERITFEYVMLKDVNDSDDDARRLVKL 314

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIRTPRG DI+AACGQL
Sbjct: 315 IEGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 374

Query: 366 KSLSKRIPK 374
           KS ++R  K
Sbjct: 375 KSATERARK 383


>gi|205829857|sp|Q28VS6|RLMN_JANSC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 392

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/372 (55%), Positives = 274/372 (73%), Gaps = 11/372 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +LIG+ R+ L  AL++ G P++  +MRT QIW+W+Y +G+RDF  M+++S++ R +L + 
Sbjct: 24  NLIGLTRDGLRAALIEAGTPEKQAKMRTGQIWQWLYQKGVRDFASMTNLSKDYRAMLAET 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F    PE+V  ++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+LT
Sbjct: 84  FVADVPEVVSRQVSADGTRKYLVR-----IAGGHEVEVVYIPEVDRGTLCISSQVGCTLT 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF-PGCEDIEGMVIPSVGRKISNIVMMG 186
           CSFC+TGTQKLVRNLTA EI+ QV+LAR  L ++ P  E  +        R +SNIV+MG
Sbjct: 139 CSFCHTGTQKLVRNLTAGEIIGQVMLARDDLDEWVPTGEGSDAK-----PRLVSNIVLMG 193

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IA+  +EIG  LA+S HA 
Sbjct: 194 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAQEIGCQLAVSFHAT 253

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++D+R+ LVPIN+++P+  L+DA R YP +SN+ RITFEYVMLK +NDS  DA  L++++
Sbjct: 254 TDDVRDKLVPINKRWPIADLLDALRDYPRVSNSERITFEYVMLKDVNDSDADARRLVQLI 313

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KGIPAKINLIPFN WPG  Y  SD   I  F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 314 KGIPAKINLIPFNEWPGAPYERSDWARIEAFADIIYKAGYASPIRTPRGEDIMAACGQLK 373

Query: 367 SLSKRIPKVPRQ 378
           S ++R  K  +Q
Sbjct: 374 SATERARKSRKQ 385


>gi|329890963|ref|ZP_08269306.1| radical SAM superfamily protein [Brevundimonas diminuta ATCC 11568]
 gi|328846264|gb|EGF95828.1| radical SAM superfamily protein [Brevundimonas diminuta ATCC 11568]
          Length = 387

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/367 (55%), Positives = 270/367 (73%), Gaps = 16/367 (4%)

Query: 8   SLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +L G+ R+EL +AL+   I P    +MR SQ+W+WI+  G+ DF  MSD++++ R  L +
Sbjct: 19  NLSGLTRDELRQALIDAEICPPEKAKMRASQVWRWIHHYGVTDFALMSDVAKDTRAKLAE 78

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125
            F++  PEIV+ ++S DGTRKWL+R         +EIETVYIP+  R G LCVSSQVGC+
Sbjct: 79  AFTLARPEIVERQVSKDGTRKWLIR-----TAPGIEIETVYIPDVGRAGALCVSSQVGCT 133

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC+TGTQKLVRNLT  EI+ QV +AR  L ++P          P   R++SNIV M
Sbjct: 134 LNCTFCHTGTQKLVRNLTTAEIVAQVQVARDDLDEWPS---------PKEDRRLSNIVFM 184

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D+V  ++ I SD+ G++ S+RRIT+STSG VP +  +GE    MLAISLHA
Sbjct: 185 GMGEPLYNLDHVANAIDIISDNEGIALSRRRITVSTSGVVPQLNALGERTAAMLAISLHA 244

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LR+ LVP+N+KYPL+ L+ A R YPGLSNARR+TFEYVMLKG+NDSP +A  LIK+
Sbjct: 245 TNDPLRDQLVPLNKKYPLDQLMAAIRAYPGLSNARRVTFEYVMLKGVNDSPAEARALIKL 304

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIP+K+NLIPFNPWPG +Y CSD K I TF+  + ++GY+SPIRTPRG DILAACGQL
Sbjct: 305 IEGIPSKVNLIPFNPWPGTDYQCSDWKTIETFAAILNKAGYASPIRTPRGRDILAACGQL 364

Query: 366 KSLSKRI 372
           KS S+++
Sbjct: 365 KSESEKL 371


>gi|149913266|ref|ZP_01901800.1| hypothetical protein RAZWK3B_04720 [Roseobacter sp. AzwK-3b]
 gi|149813672|gb|EDM73498.1| hypothetical protein RAZWK3B_04720 [Roseobacter sp. AzwK-3b]
          Length = 382

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/371 (54%), Positives = 275/371 (74%), Gaps = 9/371 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ R+ L E L++ G P++  +MR +QIW+W+Y  G+RDF  M+++S+  R +L ++
Sbjct: 13  NLVGLTRDRLREVLIEAGTPEKQAKMRVNQIWQWLYQWGVRDFHAMTNLSKTYRQMLAEN 72

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+LT
Sbjct: 73  FVIEIPEMVSKQVSADGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTLT 127

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNL+A EI+ QV++AR  L ++P   +  G       R +SNIV+MGM
Sbjct: 128 CSFCHTGTQKLVRNLSAGEIVGQVMMARDDLDEWPRPGEGAG----ERPRLLSNIVLMGM 183

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NFDNV+ ++ IA D  G+S S+RRITLSTSG VP IA+  EEIG MLA+S HA +
Sbjct: 184 GEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAEEIGCMLAVSFHATT 243

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R+ LVPIN+K+ +E L+ A R YP LSN+ RITFEYVMLK +NDS  DA  L++++K
Sbjct: 244 DEVRDKLVPINKKWNIETLLGALREYPRLSNSERITFEYVMLKDVNDSDADARRLVQLIK 303

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  +  SD   I  F++ + ++GY+SPIRTPRG DI+AACGQLKS
Sbjct: 304 GIPAKINLIPFNEWPGAPHQRSDWDRIEKFADIVYKAGYASPIRTPRGEDIMAACGQLKS 363

Query: 368 LSKRIPKVPRQ 378
            ++R  K  +Q
Sbjct: 364 ATERARKSRKQ 374


>gi|89052760|ref|YP_508211.1| hypothetical protein Jann_0269 [Jannaschia sp. CCS1]
 gi|88862309|gb|ABD53186.1| 23S rRNA m(2)A-2503 methyltransferase [Jannaschia sp. CCS1]
          Length = 410

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/372 (55%), Positives = 274/372 (73%), Gaps = 11/372 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +LIG+ R+ L  AL++ G P++  +MRT QIW+W+Y +G+RDF  M+++S++ R +L + 
Sbjct: 42  NLIGLTRDGLRAALIEAGTPEKQAKMRTGQIWQWLYQKGVRDFASMTNLSKDYRAMLAET 101

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F    PE+V  ++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+LT
Sbjct: 102 FVADVPEVVSRQVSADGTRKYLVR-----IAGGHEVEVVYIPEVDRGTLCISSQVGCTLT 156

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF-PGCEDIEGMVIPSVGRKISNIVMMG 186
           CSFC+TGTQKLVRNLTA EI+ QV+LAR  L ++ P  E  +        R +SNIV+MG
Sbjct: 157 CSFCHTGTQKLVRNLTAGEIIGQVMLARDDLDEWVPTGEGSDAK-----PRLVSNIVLMG 211

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IA+  +EIG  LA+S HA 
Sbjct: 212 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAQEIGCQLAVSFHAT 271

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++D+R+ LVPIN+++P+  L+DA R YP +SN+ RITFEYVMLK +NDS  DA  L++++
Sbjct: 272 TDDVRDKLVPINKRWPIADLLDALRDYPRVSNSERITFEYVMLKDVNDSDADARRLVQLI 331

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KGIPAKINLIPFN WPG  Y  SD   I  F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 332 KGIPAKINLIPFNEWPGAPYERSDWARIEAFADIIYKAGYASPIRTPRGEDIMAACGQLK 391

Query: 367 SLSKRIPKVPRQ 378
           S ++R  K  +Q
Sbjct: 392 SATERARKSRKQ 403


>gi|163738104|ref|ZP_02145520.1| hypothetical protein RGBS107_06819 [Phaeobacter gallaeciensis
           BS107]
 gi|161388720|gb|EDQ13073.1| hypothetical protein RGBS107_06819 [Phaeobacter gallaeciensis
           BS107]
          Length = 394

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/375 (54%), Positives = 274/375 (73%), Gaps = 14/375 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R++L E L+  G P++  +MR  QIW+WIY  G RDF  M+++++  R  L+
Sbjct: 23  KINLVGLTRDQLRETLIAHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRADLD 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 83  EHFEIATPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183
           LTCSFC+TGTQKLVRNLTA EI+ Q+++AR  L ++P  G    E        R +SNIV
Sbjct: 138 LTCSFCHTGTQKLVRNLTAAEIVGQIMMARDDLDEWPVPGAPKDET-------RLLSNIV 190

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG +LA+S 
Sbjct: 191 LMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAVSF 250

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++++R+ LVPIN+++ +E L++A R YP L+N+ RITFEYVML G+NDS  DA  L+
Sbjct: 251 HATTDEVRDKLVPINKRWNIEALLEALRAYPRLTNSERITFEYVMLNGVNDSDEDAHRLV 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++KGIPAK+NLIPFN WPG  Y  S    I  F+  I ++GY+SPIRTPRG DILAACG
Sbjct: 311 ELIKGIPAKVNLIPFNEWPGSPYTRSSNNRIHAFANIIYQAGYASPIRTPRGEDILAACG 370

Query: 364 QLKSLSKRIPKVPRQ 378
           QLKS ++R  K  +Q
Sbjct: 371 QLKSATERARKSRKQ 385


>gi|163742501|ref|ZP_02149887.1| radical SAM enzyme, Cfr family protein [Phaeobacter gallaeciensis
           2.10]
 gi|161384086|gb|EDQ08469.1| radical SAM enzyme, Cfr family protein [Phaeobacter gallaeciensis
           2.10]
          Length = 394

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/375 (54%), Positives = 274/375 (73%), Gaps = 14/375 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R++L E L+  G P++  +MR  QIW+WIY  G RDF  M+++++  R  L+
Sbjct: 23  KINLVGLTRDQLRETLIAHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRADLD 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  PE++ +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 83  EHFEIATPEVMSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183
           LTCSFC+TGTQKLVRNLTA EI+ Q+++AR  L ++P  G    E        R +SNIV
Sbjct: 138 LTCSFCHTGTQKLVRNLTAAEIVGQIMMARDDLDEWPVPGAPKDET-------RLLSNIV 190

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG +LA+S 
Sbjct: 191 LMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAVSF 250

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++++R+ LVPIN+++ +E L++A R YP L+N+ RITFEYVML G+NDS  DA  L+
Sbjct: 251 HATTDEVRDKLVPINKRWNIEALLEALRAYPRLTNSERITFEYVMLNGVNDSDEDAHRLV 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++KGIPAK+NLIPFN WPG  Y  S    I  F+  I ++GY+SPIRTPRG DILAACG
Sbjct: 311 ELIKGIPAKVNLIPFNEWPGSPYTRSSNNRIHAFANIIYQAGYASPIRTPRGEDILAACG 370

Query: 364 QLKSLSKRIPKVPRQ 378
           QLKS ++R  K  +Q
Sbjct: 371 QLKSATERARKSRKQ 385


>gi|126727284|ref|ZP_01743120.1| radical SAM enzyme, Cfr family protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126703493|gb|EBA02590.1| radical SAM enzyme, Cfr family protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 392

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/370 (55%), Positives = 272/370 (73%), Gaps = 11/370 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R+ + +AL+  G+P++  +MRT QIW WIY +G+R F  M+++S+  R  L 
Sbjct: 22  KINLVGLTRDGMRDALIAAGLPEKQGKMRTGQIWAWIYEKGVRTFDVMTNLSKGYRAELA 81

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V  +IS DGTRK+L+R     I G  E+E VYIPEK RGTLC+SSQVGC+
Sbjct: 82  ESFEIAVPEVVTRQISEDGTRKYLVR-----IAGGHEVEVVYIPEKDRGTLCISSQVGCT 136

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV-GRKISNIVM 184
           LTCSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P     E    P+V  R +SNIV+
Sbjct: 137 LTCSFCHTGTQKLVRNLTAGEIIGQVMIARDDLGEWP-----ELAQSPNVEARLLSNIVL 191

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF++V+ ++ IA D  G+S S+RRITLSTSG VP IAR  +EIG MLA+S H
Sbjct: 192 MGMGEPLYNFESVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTADEIGCMLAVSFH 251

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++D+R+ LVPIN+K+ +E L+DA R YP  SN+ RITFEYVML G+NDS  DA  L++
Sbjct: 252 ATTDDVRDKLVPINKKWNIEALLDALRAYPKASNSERITFEYVMLNGVNDSDEDAHRLVE 311

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KGIPAKINLIPFN WPG  Y  S    I  F++ +  +GYSSP+R PRG DI+AACGQ
Sbjct: 312 LIKGIPAKINLIPFNEWPGAPYQRSSNNRIRAFADIVFNAGYSSPVRRPRGEDIMAACGQ 371

Query: 365 LKSLSKRIPK 374
           LKS ++R  K
Sbjct: 372 LKSETERARK 381


>gi|254439770|ref|ZP_05053264.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 307]
 gi|198255216|gb|EDY79530.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 307]
          Length = 394

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/371 (54%), Positives = 274/371 (73%), Gaps = 8/371 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++G+ R++L +AL+ +G+ ++  +MR +Q+W+W+Y  G+RDF+ M+++S++ R  L +H
Sbjct: 25  NIVGLTRDQLRDALIGVGVTEKQAKMRVNQVWQWLYHWGVRDFEVMTNLSKDFRTTLAEH 84

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PE+V + +S DGTRK+L+R     I G  E+E VYIPEK RGTLC+SSQVGC+LT
Sbjct: 85  FKIELPEVVTKDVSTDGTRKYLVR-----IAGGHEVEVVYIPEKDRGTLCISSQVGCTLT 139

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV+LAR  L ++P      G   P   R +SNIV+MGM
Sbjct: 140 CSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPEPGQGTGENGP---RLLSNIVLMGM 196

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ IA D  G++ S+RRITLSTSG VP I R  +EIG MLAIS H  +
Sbjct: 197 GEPLYNFENVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIHRTADEIGCMLAISFHGTT 256

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R+ LVPIN+K+ LE L++A   YP +SN+ RITFEYVMLK +NDS  DA  L+K+++
Sbjct: 257 DEIRDKLVPINKKWNLEKLLEALAAYPKVSNSERITFEYVMLKDVNDSDEDARRLVKLIE 316

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  Y  SD   I  F++ I  +GY+SPIR PRG DI+AACGQLKS
Sbjct: 317 GIPAKINLIPFNEWPGAPYKRSDADRIKAFADIIYNAGYASPIRRPRGEDIMAACGQLKS 376

Query: 368 LSKRIPKVPRQ 378
            ++R  K  +Q
Sbjct: 377 ATERSRKSRKQ 387


>gi|205829860|sp|A8LNF0|RLMN_DINSH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 394

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/379 (55%), Positives = 275/379 (72%), Gaps = 9/379 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R EL EAL   G P++ V+MR +QIW+W+Y RG+RDF  M+++++  R LL 
Sbjct: 23  KRNLVGLTRPELAEALAAAGTPEKQVKMRVNQIWQWLYERGVRDFNDMTNLAKPYRALLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F I  PE+V   +S DGTRK+L+R     I G  E+E VYIPE+ RGTLCVSSQVGC+
Sbjct: 83  DQFEIAVPEVVSRHVSEDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ Q+++AR  LG++P    + G    +  R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAGEIVGQIMIARDDLGEWP----LPGRNPKNETRLLSNIVLM 193

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ V+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG MLA+S HA
Sbjct: 194 GMGEPLYNFEAVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCMLAVSFHA 253

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ LVPIN+++ +  L+DA R YP  SN+ RITFEYVMLKG+NDS  DA  L+++
Sbjct: 254 TTDEVRDKLVPINKRWNIATLLDALRDYPKASNSERITFEYVMLKGVNDSDEDARRLVEL 313

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIRTPRG DI+AACGQL
Sbjct: 314 IKGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 373

Query: 366 KSLSKRIPKVPRQEMQITG 384
           KS ++R  K   Q    TG
Sbjct: 374 KSATERARKSRAQIAAETG 392


>gi|159045851|ref|YP_001534645.1| radical SAM enzyme [Dinoroseobacter shibae DFL 12]
 gi|157913611|gb|ABV95044.1| radical SAM enzyme [Dinoroseobacter shibae DFL 12]
          Length = 406

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/379 (55%), Positives = 275/379 (72%), Gaps = 9/379 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R EL EAL   G P++ V+MR +QIW+W+Y RG+RDF  M+++++  R LL 
Sbjct: 35  KRNLVGLTRPELAEALAAAGTPEKQVKMRVNQIWQWLYERGVRDFNDMTNLAKPYRALLA 94

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F I  PE+V   +S DGTRK+L+R     I G  E+E VYIPE+ RGTLCVSSQVGC+
Sbjct: 95  DQFEIAVPEVVSRHVSEDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQVGCT 149

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ Q+++AR  LG++P    + G    +  R +SNIV+M
Sbjct: 150 LTCSFCHTGTQKLVRNLTAGEIVGQIMIARDDLGEWP----LPGRNPKNETRLLSNIVLM 205

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ V+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG MLA+S HA
Sbjct: 206 GMGEPLYNFEAVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCMLAVSFHA 265

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ LVPIN+++ +  L+DA R YP  SN+ RITFEYVMLKG+NDS  DA  L+++
Sbjct: 266 TTDEVRDKLVPINKRWNIATLLDALRDYPKASNSERITFEYVMLKGVNDSDEDARRLVEL 325

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIRTPRG DI+AACGQL
Sbjct: 326 IKGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 385

Query: 366 KSLSKRIPKVPRQEMQITG 384
           KS ++R  K   Q    TG
Sbjct: 386 KSATERARKSRAQIAAETG 404


>gi|260574031|ref|ZP_05842036.1| radical SAM enzyme, Cfr family [Rhodobacter sp. SW2]
 gi|259023497|gb|EEW26788.1| radical SAM enzyme, Cfr family [Rhodobacter sp. SW2]
          Length = 429

 Score =  421 bits (1082), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/369 (54%), Positives = 270/369 (73%), Gaps = 10/369 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +++G+ R++L  AL+  G P+R  +MR  Q+W+W+Y  G RDF  MS+++++ R  L 
Sbjct: 23  KINIVGLTRDQLHAALVAAGTPERQAKMRVGQVWQWVYHWGKRDFALMSNLAKDYRAFLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  P++V  ++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+
Sbjct: 83  EHFVIELPQVVTRQLSDDGTRKYLVR-----IAGGHEVEVVYIPEDGRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTC+FC+TGTQ LVRNLTA EI+ QV+LAR  LG++P    ++G       R ISN+V+M
Sbjct: 138 LTCTFCHTGTQVLVRNLTAAEIVGQVMLARDDLGEWP----VQGAPKDET-RLISNVVLM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ +  D+ G++  +RRITLSTSG VP IAR   EIG +LA+SLHA
Sbjct: 193 GMGEPLYNFDNVRDAMKVVMDNEGIALGRRRITLSTSGVVPEIARTAREIGCLLAVSLHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ LVPINRK+ +  L+D  R YPGL+N+ RITFEYVML+G+NDS  DA  L+++
Sbjct: 253 TTDEVRDKLVPINRKWNIAALMDELRAYPGLTNSERITFEYVMLQGVNDSKEDAYRLVEL 312

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAKINLIPFN WPG  Y  S    I  F++ I  +GY+SPIRTPRG DI+AACGQL
Sbjct: 313 IKGIPAKINLIPFNEWPGAPYKRSSGNRIHAFADIIYNAGYASPIRTPRGEDIMAACGQL 372

Query: 366 KSLSKRIPK 374
           KS ++R  K
Sbjct: 373 KSATERARK 381


>gi|254451490|ref|ZP_05064927.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 238]
 gi|198265896|gb|EDY90166.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 238]
          Length = 399

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/371 (54%), Positives = 272/371 (73%), Gaps = 8/371 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++G+ R++L +AL+ +G+ ++  +MR +Q+W+W+Y  G+R+F  M+++S++ R  L +H
Sbjct: 30  NIVGLTRDQLRDALIGVGVTEKQAKMRVNQVWQWLYHWGVREFDVMTNLSKDFRATLAEH 89

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PE+V + +S DGTRK+L+R     I G  E+E VYIPEK RGTLC+SSQVGC+LT
Sbjct: 90  FKIELPEVVTKDVSTDGTRKYLVR-----IAGGHEVEVVYIPEKDRGTLCISSQVGCTLT 144

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV+LAR  L ++P      G   P   R +SNIV+MGM
Sbjct: 145 CSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPEPGQGTGDNGP---RLLSNIVLMGM 201

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ IA D  G++ S+RRITLSTSG VP I R   EIG MLAIS H  +
Sbjct: 202 GEPLYNFENVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIHRTANEIGCMLAISFHGTT 261

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R+ LVPIN+K+ LE L++A   YP +SN+ RITFEYVMLK +NDS  DA  L+K+++
Sbjct: 262 DEIRDKLVPINKKWNLEKLLEALAAYPKVSNSERITFEYVMLKDVNDSDEDARRLVKLIE 321

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  Y  SD   I  F++ I  +GY+SPIR PRG DI+AACGQLKS
Sbjct: 322 GIPAKINLIPFNEWPGAPYKRSDSDRIKAFADIIYNAGYASPIRRPRGEDIMAACGQLKS 381

Query: 368 LSKRIPKVPRQ 378
            ++R  K  +Q
Sbjct: 382 ATERARKSRKQ 392


>gi|197106949|ref|YP_002132326.1| predicted Fe-S-cluster redox enzyme [Phenylobacterium zucineum
           HLK1]
 gi|254807192|sp|B4RCA4|RLMN_PHEZH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|196480369|gb|ACG79897.1| predicted Fe-S-cluster redox enzyme [Phenylobacterium zucineum
           HLK1]
          Length = 385

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/382 (52%), Positives = 277/382 (72%), Gaps = 18/382 (4%)

Query: 6   KESLIGMMREELEEALLKIGI--PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + +L GM R EL   L+++G+  P++  +MR SQ+W+W++  G+ DF+ M+D+++E R  
Sbjct: 19  RPNLSGMTRAELAACLVELGVVRPEK-AKMRASQLWRWMHHYGVTDFEKMTDVAKETRAA 77

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQV 122
           L +  +I  P++V+ ++S DGTRKWL+R     +   +E+ETVYIP+  R G LCVSSQV
Sbjct: 78  LAEVCAISRPQVVERQVSKDGTRKWLIR-----MAPGIEVETVYIPDVGRAGALCVSSQV 132

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C+FC+TGTQ LVRNLTA EI+ QV +AR  LG++P          P   R++SNI
Sbjct: 133 GCTLNCTFCHTGTQALVRNLTAAEIVAQVQVARDDLGEWPS---------PKEDRRLSNI 183

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N DNV  ++ I +D+ G++ S+RRIT+STSG VP +A +GE    MLAIS
Sbjct: 184 VFMGMGEPLYNLDNVAAAIDIIADNEGIAISRRRITVSTSGVVPELAALGERTQAMLAIS 243

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +++LR  LVP+NRKYP+  L+ A R YPGLSN++R+TFEYVMLKG+NDSP +A  L
Sbjct: 244 LHATNDELREKLVPLNRKYPIAELMAAIRAYPGLSNSKRVTFEYVMLKGVNDSPAEAKAL 303

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           + +LKG+PAKINLIPFNPWPG +Y CSD   I  F+  + R+GY+SPIRTPRG DILAAC
Sbjct: 304 VNLLKGVPAKINLIPFNPWPGSQYECSDWGTIERFAAVLNRAGYASPIRTPRGRDILAAC 363

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQLKS S+++    R+++   G
Sbjct: 364 GQLKSESEKLRASARRKLAAGG 385


>gi|254418192|ref|ZP_05031916.1| radical SAM enzyme, Cfr family [Brevundimonas sp. BAL3]
 gi|196184369|gb|EDX79345.1| radical SAM enzyme, Cfr family [Brevundimonas sp. BAL3]
          Length = 390

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/367 (54%), Positives = 267/367 (72%), Gaps = 16/367 (4%)

Query: 8   SLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +L G+ R  L +AL+   + P    +MR SQ+W WI+  G+ +F  MS+++++++  L +
Sbjct: 21  NLSGLTRAGLRQALIDANVCPPEKAKMRASQVWSWIHHYGVTEFSAMSNVAKDMQAKLAE 80

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125
           HF++  PEIV+ ++S DGTRKWL+R         +EIETVYIP+  R G LCVSSQVGC+
Sbjct: 81  HFTLARPEIVERQVSKDGTRKWLIR-----TAPGIEIETVYIPDVGRAGALCVSSQVGCT 135

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC+TGTQKLVRNLTA EI+ QV +AR  L ++P          P   R++SNIV M
Sbjct: 136 LNCTFCHTGTQKLVRNLTAAEIVAQVQVARDDLEEWPS---------PKEDRRLSNIVFM 186

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D+V  ++ I SD+ G++ S+RRIT+STSG  P +  +G     MLAISLHA
Sbjct: 187 GMGEPLYNLDHVADAIDIISDNEGIALSRRRITVSTSGVAPQLDALGTRTAAMLAISLHA 246

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LR++LVP+N+KYPL+ L+   R YPGLSNARR+TFEYVMLKG+NDSP +A  L+K+
Sbjct: 247 TNDALRDVLVPLNKKYPLDQLMAGIRAYPGLSNARRVTFEYVMLKGVNDSPEEARALLKL 306

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIPAKINLIPFNPWPG EY CSD K I  F+  + ++GY+SPIRTPRG DILAACGQL
Sbjct: 307 IEGIPAKINLIPFNPWPGVEYECSDWKTIERFAAILNKAGYASPIRTPRGRDILAACGQL 366

Query: 366 KSLSKRI 372
           KS S+++
Sbjct: 367 KSESEKV 373


>gi|110677600|ref|YP_680607.1| hypothetical protein RD1_0192 [Roseobacter denitrificans OCh 114]
 gi|123066012|sp|Q16DM2|RLMN_ROSDO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|109453716|gb|ABG29921.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 394

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/377 (53%), Positives = 270/377 (71%), Gaps = 10/377 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ R  + +AL+  G P++  +MR  QIW+WIY  G+RDF  M+++S+  R  L + 
Sbjct: 24  NLVGLTRAAMRDALIAEGTPEKQAKMRVGQIWQWIYQWGVRDFDLMTNLSKAYRAQLKEK 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +  PE+V  ++S DGTRK+L+R     I G  E+E VYIP++ RGTLCVSSQVGC+LT
Sbjct: 84  FVVEVPEVVTRQVSEDGTRKYLVR-----IAGGHEVEVVYIPDEGRGTLCVSSQVGCTLT 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P     E        R +SNIV+MGM
Sbjct: 139 CSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWP-----EIGAPKDETRLLSNIVLMGM 193

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP IAR   EIG  LA+S HA +
Sbjct: 194 GEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAVEIGCQLAVSFHATT 253

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +D+R+ LVPIN+++ +E+L++A R YP +SN+ RITFEYVML G+NDS  DA  L+K++ 
Sbjct: 254 DDVRDTLVPINKRWNIEVLLEALRAYPKVSNSERITFEYVMLHGVNDSDEDARRLVKLID 313

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIRTPRG DI+AACGQLKS
Sbjct: 314 GIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLKS 373

Query: 368 LSKRIPKVPRQEMQITG 384
            ++R  K  +Q    TG
Sbjct: 374 ATERARKSRKQIAAETG 390


>gi|329848315|ref|ZP_08263343.1| radical SAM superfamily protein [Asticcacaulis biprosthecum C19]
 gi|328843378|gb|EGF92947.1| radical SAM superfamily protein [Asticcacaulis biprosthecum C19]
          Length = 405

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/377 (55%), Positives = 272/377 (72%), Gaps = 17/377 (4%)

Query: 8   SLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++ G+ R+ L  ALL+ G+  +R  +MR  QIW+WI+  G+ DF  M+DI+++ R L   
Sbjct: 19  NITGLTRDGLVRALLESGVVEERKAKMRMQQIWRWIHHYGVTDFDLMTDIAKDQRALFAD 78

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125
            F++  PEIV+ +IS DGTRK+L+R     +G  +E+E+V+IP   R G LCVSSQVGC+
Sbjct: 79  RFTLARPEIVERQISRDGTRKYLIR-----MGPGIEVESVFIPSVGRAGALCVSSQVGCT 133

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC+TGTQKLVRNLTA EI+ QV +AR  LG++P          P   R++SNIV M
Sbjct: 134 LNCTFCHTGTQKLVRNLTAAEIVAQVQVARDDLGEWPS---------PKEDRQLSNIVFM 184

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N DNV  ++ I SD+ G++ S+RRIT+STSG VP +  +G     MLAISLHA
Sbjct: 185 GMGEPLYNLDNVADAIDIISDNEGIALSRRRITVSTSGVVPELEALGNRTAAMLAISLHA 244

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LR+ +VP+N+KY +E L+   R YPGLSNARR+TFEYVMLKG+NDSP +A  LIK+
Sbjct: 245 TNDTLRDEIVPLNKKYNIEALMAGIRAYPGLSNARRVTFEYVMLKGVNDSPAEARALIKL 304

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG +Y CSD   I TF+  + ++GY+SPIRTPRG DILAACGQL
Sbjct: 305 LKGIPAKINLIPFNPWPGTDYQCSDWTAIETFAAILNKAGYASPIRTPRGRDILAACGQL 364

Query: 366 KSLS-KRIPKVPRQEMQ 381
           KS S K+   V R+E Q
Sbjct: 365 KSDSEKKRASVLRREAQ 381


>gi|83941897|ref|ZP_00954359.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. EE-36]
 gi|83847717|gb|EAP85592.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. EE-36]
          Length = 391

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/371 (54%), Positives = 268/371 (72%), Gaps = 10/371 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ R+ +  AL+  G P++  +MR  QIW+WIY  G RDF  M+++S+  R  L + 
Sbjct: 24  NLVGLTRDAMRAALIAEGTPEKQAKMRVGQIWQWIYQWGTRDFADMTNLSKAFRAELAEK 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLCVSSQVGC+LT
Sbjct: 84  FVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCVSSQVGCTLT 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P    + G  +    R +SNIV+MGM
Sbjct: 139 CSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWP----VPG-TLTDAPRLLSNIVLMGM 193

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP IAR  EEIG  LA+S HA +
Sbjct: 194 GEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAVSFHATT 253

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++RN LVPIN+++ +  LI A R YP +SN+ RITFEYVML G+NDS  DA  LI++++
Sbjct: 254 DEVRNKLVPINKRWNIAELIKALRAYPKVSNSERITFEYVMLDGVNDSDADAHRLIELIR 313

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  Y  S    I  FSE + ++GY+SP+R PRG DI+AACGQLKS
Sbjct: 314 GIPAKINLIPFNEWPGAPYKRSSNNRIRAFSEIVYQAGYASPVRKPRGEDIMAACGQLKS 373

Query: 368 LSKRIPKVPRQ 378
            ++R  K  +Q
Sbjct: 374 ATERERKSRKQ 384


>gi|255261946|ref|ZP_05341288.1| radical SAM enzyme, Cfr family [Thalassiobium sp. R2A62]
 gi|255104281|gb|EET46955.1| radical SAM enzyme, Cfr family [Thalassiobium sp. R2A62]
          Length = 395

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/373 (53%), Positives = 273/373 (73%), Gaps = 14/373 (3%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ R+ + + L++ G P++  +MR  QIW+WIYV+G+R F  M+++S++ R  L ++
Sbjct: 24  NLVGLRRDAMRDVLIEHGTPEKQAKMRVGQIWQWIYVKGLRSFDEMTNLSKDYRAKLAEN 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+LT
Sbjct: 84  FVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCTLT 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIVMM 185
           CSFC+TGTQKLVRNLT  EI+ QV++AR  LG++P  G  + E        R +SNIV+M
Sbjct: 139 CSFCHTGTQKLVRNLTPAEIIGQVMVARDDLGEWPEPGTPNDEA-------RLLSNIVLM 191

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ V+ ++ IA D  G+S S+RRITLSTSG VP IA+  EEIG MLA+S HA
Sbjct: 192 GMGEPLYNFEGVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAEEIGCMLAVSFHA 251

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++D+R+ LVPIN+++ +  L+DA R YP +SN+ RITFEYVML G+ND+  DA  L+++
Sbjct: 252 TTDDVRDKLVPINKRWNIAELLDALRAYPKVSNSERITFEYVMLDGVNDTDEDAHRLVEL 311

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR PRG DI+AACGQL
Sbjct: 312 IKGIPAKINLIPFNEWPGAPYKRSSNNRIRAFAHIIYKAGYASPIRKPRGEDIMAACGQL 371

Query: 366 KSLSKRIPKVPRQ 378
           KS ++R  K  +Q
Sbjct: 372 KSATERARKSRKQ 384


>gi|83855374|ref|ZP_00948904.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. NAS-14.1]
 gi|83843217|gb|EAP82384.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. NAS-14.1]
          Length = 391

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/371 (54%), Positives = 269/371 (72%), Gaps = 10/371 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ R+ +  AL+  G P++  +MR  QIW+WIY  G RDF  M+++S+  R  L + 
Sbjct: 24  NLVGLTRDAMRAALIAEGTPEKQAKMRVGQIWQWIYQWGTRDFADMTNLSKAFRAELAEK 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLCVSSQVGC+LT
Sbjct: 84  FVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCVSSQVGCTLT 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P    + G  +    R +SNIV+MGM
Sbjct: 139 CSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWP----VPG-TLTDAPRLLSNIVLMGM 193

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP IAR  EEIG  LA+S HA +
Sbjct: 194 GEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAVSFHATT 253

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R+ LVPIN+++ +  LI+A R YP +SN+ RITFEYVML G+NDS  DA  LI++++
Sbjct: 254 DEVRDKLVPINKRWNIAELIEALRAYPKVSNSERITFEYVMLDGVNDSDADAHRLIELIR 313

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  Y  S    I  FSE + ++GY+SP+R PRG DI+AACGQLKS
Sbjct: 314 GIPAKINLIPFNEWPGAPYKRSSNNRIRAFSEIVYQAGYASPVRKPRGEDIMAACGQLKS 373

Query: 368 LSKRIPKVPRQ 378
            ++R  K  +Q
Sbjct: 374 ATERERKSRKQ 384


>gi|254486932|ref|ZP_05100137.1| radical SAM enzyme, Cfr family [Roseobacter sp. GAI101]
 gi|214043801|gb|EEB84439.1| radical SAM enzyme, Cfr family [Roseobacter sp. GAI101]
          Length = 391

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/371 (54%), Positives = 267/371 (71%), Gaps = 10/371 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ R+ + E L+  G P++  +MR  QIW+WIY  G RDF  M+++S+  R  L + 
Sbjct: 24  NLVGLTRDAMREVLIAQGTPEKQAKMRVGQIWQWIYQWGTRDFAEMTNLSKAFRAELAEK 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLCVSSQVGC+LT
Sbjct: 84  FVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEDGRGTLCVSSQVGCTLT 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV++AR  L ++P    + G  I    R +SNIV+MGM
Sbjct: 139 CSFCHTGTQKLVRNLTAAEIIGQVMVARDDLDEWP----VPG-TITEAPRLLSNIVLMGM 193

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP IAR  EEIG  LA+S HA +
Sbjct: 194 GEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAVSFHATT 253

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R+ LVPIN+++ +  LI+A R YP +SN+ RITFEYVML G+NDS  DA  LI++++
Sbjct: 254 DEVRDKLVPINKRWNIAELIEALRSYPKVSNSERITFEYVMLNGVNDSDADAYRLIELIR 313

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  Y  S    I  FSE I ++GY+SP+R PRG DI+AACGQLKS
Sbjct: 314 GIPAKINLIPFNEWPGAPYTRSSNNRIRAFSEIIYKAGYASPVRKPRGEDIMAACGQLKS 373

Query: 368 LSKRIPKVPRQ 378
            ++R  K  +Q
Sbjct: 374 ATERARKSRKQ 384


>gi|83952609|ref|ZP_00961339.1| radical SAM enzyme, Cfr family protein [Roseovarius nubinhibens
           ISM]
 gi|83835744|gb|EAP75043.1| radical SAM enzyme, Cfr family protein [Roseovarius nubinhibens
           ISM]
          Length = 395

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/373 (54%), Positives = 269/373 (72%), Gaps = 12/373 (3%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ R+++ + L+  G P++  +MR SQIW+WIY  G+RDF  M+++++  R  L + 
Sbjct: 24  NLVGLTRDKMRDVLIAHGTPEKQAKMRVSQIWQWIYQWGVRDFDAMTNLAKAYRAELAEK 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLCVSSQVGC+LT
Sbjct: 84  FVIEIPEVVSKQVSSDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQVGCTLT 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P     E        R +SNIV+MGM
Sbjct: 139 CSFCHTGTQKLVRNLTAGEIIGQVMMARDDLGEWP-----EQGAPKDETRLLSNIVLMGM 193

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NFDNV+ ++ IA D+ G+  S+RRITLSTSG VP IAR  +EIG  LAIS HA +
Sbjct: 194 GEPLYNFDNVRDAMKIAMDAEGIQLSRRRITLSTSGVVPEIARTAQEIGCQLAISFHATT 253

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           ++ RN LVPIN+++ +E L+ A   YP +SN+ RITFEYVML G+ND+  DA  LI+++K
Sbjct: 254 DETRNKLVPINKRWNIEELLQALASYPKVSNSERITFEYVMLDGVNDTDDDARRLIQMIK 313

Query: 308 --GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              IPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIRTPRG DI+AACGQL
Sbjct: 314 DHAIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 373

Query: 366 KSLSKRIPKVPRQ 378
           KS ++R  K  R+
Sbjct: 374 KSATERARKSRRE 386


>gi|163733192|ref|ZP_02140636.1| hypothetical protein RLO149_11040 [Roseobacter litoralis Och 149]
 gi|161393727|gb|EDQ18052.1| hypothetical protein RLO149_11040 [Roseobacter litoralis Och 149]
          Length = 394

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/371 (54%), Positives = 267/371 (71%), Gaps = 10/371 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ R  + + L+  G P++  +MR  QIW+WIY  G+RDF  M+++S+  R  L + 
Sbjct: 24  NLVGLTRAAMRDVLIAEGTPEKQAKMRVGQIWQWIYQWGVRDFDLMTNLSKAYRAELKEK 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +  PE+V  ++S DGTRK+L+R     I G  E+E VYIPE  RGTLCVSSQVGC+LT
Sbjct: 84  FVVEVPEVVTRQVSEDGTRKYLVR-----IAGGHEVEVVYIPEDGRGTLCVSSQVGCTLT 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P     E        R +SNIV+MGM
Sbjct: 139 CSFCHTGTQKLVRNLTAAEIIGQVIIARDDLGEWP-----EIGAPKDETRLLSNIVLMGM 193

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP IAR   EIG  LAIS HA +
Sbjct: 194 GEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAVEIGCQLAISFHATT 253

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +D+R+ LVPIN+++ +E+L++A R YP +SN+ RITFEYVML G+NDS  DA  L+K+++
Sbjct: 254 DDVRDKLVPINKRWNIEVLLEALRVYPKVSNSERITFEYVMLHGVNDSDEDARRLVKLIE 313

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIRTPRG DI+AACGQLKS
Sbjct: 314 GIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLKS 373

Query: 368 LSKRIPKVPRQ 378
            ++R  K  +Q
Sbjct: 374 ATERARKSRKQ 384


>gi|163793899|ref|ZP_02187873.1| radical SAM family enzyme [alpha proteobacterium BAL199]
 gi|159181010|gb|EDP65527.1| radical SAM family enzyme [alpha proteobacterium BAL199]
          Length = 389

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/369 (54%), Positives = 262/369 (71%), Gaps = 18/369 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ R+ L   L  IG+P      RT QIW W+Y RG  DFQ M+ +++ +R  L 
Sbjct: 30  RPDLLGLERDALAAVLDGIGLPA----FRTGQIWHWLYHRGATDFQTMTTLAKPLRARLA 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  P +V  + S DGT KWLLRF         E E V+IPE+ RGTLCVSSQVGC+
Sbjct: 86  ETFRISRPSVVTRQDSIDGTIKWLLRF-----ADGNEAEAVFIPEEDRGTLCVSSQVGCT 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ+LVRNLT+ EI+ QV++A   LG +P              R ++NIV+M
Sbjct: 141 LTCSFCHTGTQRLVRNLTSAEIVGQVMVALDHLGAYP---------TGGPNRPLTNIVLM 191

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D  G++ SKRRITLSTSG VP +A+ G ++GV LAISLHA
Sbjct: 192 GMGEPLYNFDNVASAMRIIMDGEGVALSKRRITLSTSGVVPMMAQCGADLGVNLAISLHA 251

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +R+ LVPINRK+P+  L+DACR YPGL+NARRITFEYVML G+ND+P DA  L+ +
Sbjct: 252 TTDTVRDDLVPINRKWPIAELLDACRRYPGLNNARRITFEYVMLAGVNDAPADARRLVAL 311

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIPAKINLIPFNPWPG +Y+CSD   I  F++ +  +GY+SP+RTPRG DILAACGQL
Sbjct: 312 IEGIPAKINLIPFNPWPGSKYVCSDPDTIERFAQIVLAAGYASPVRTPRGRDILAACGQL 371

Query: 366 KSLSKRIPK 374
           KS S ++ +
Sbjct: 372 KSESAKLTR 380


>gi|294084982|ref|YP_003551742.1| hypothetical protein SAR116_1415 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664557|gb|ADE39658.1| hypothetical protein SAR116_1415 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 372

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/367 (55%), Positives = 262/367 (71%), Gaps = 18/367 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ +  LEE ++  G+P    + R  QIW+W++  G+ +F  MSD+ + VR  L   
Sbjct: 12  NLLGLSQTALEEQIIAAGLP----KFRAKQIWRWVWRHGLTNFDEMSDLGKPVREQLATM 67

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           +    P +     S DGT KWLLRFP        E E VYIP+K+RGTLC+SSQVGC+LT
Sbjct: 68  YKADRPAVSQRLNSKDGTIKWLLRFP-----DGNEAEAVYIPDKTRGTLCISSQVGCTLT 122

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLT +EI  QV+LA   L D+P   +         GR+++NIV+MGM
Sbjct: 123 CSFCHTGTQKLVRNLTVDEICGQVMLAMDELADWPAGRN---------GRRLTNIVLMGM 173

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N++NV +++ I     G++ SKRRITLSTSG VP I R GEE+GV LAISLHA  
Sbjct: 174 GEPLFNYENVAEAMRIIMSGEGVAVSKRRITLSTSGVVPEIKRAGEELGVNLAISLHATR 233

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           ++LR+ LVPINRKY L  LI+ACR+YPGLSNARRIT+EYVML GINDS  D   L+ ++K
Sbjct: 234 DELRDELVPINRKYKLAALIEACRNYPGLSNARRITWEYVMLDGINDSDEDCRQLLALIK 293

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIP+K+NLIPFNPWPG  Y+CS    I  F++ + ++GY+SP+RTPRG DILAACGQLKS
Sbjct: 294 GIPSKLNLIPFNPWPGSPYVCSKGDRIDAFAKRVLKAGYASPVRTPRGRDILAACGQLKS 353

Query: 368 LSKRIPK 374
            S+RIP+
Sbjct: 354 ASQRIPR 360


>gi|83945705|ref|ZP_00958050.1| hypothetical protein OA2633_10954 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850906|gb|EAP88766.1| hypothetical protein OA2633_10954 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 391

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/367 (53%), Positives = 266/367 (72%), Gaps = 16/367 (4%)

Query: 8   SLIGMMREELEEALLKIG-IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +L+GM R +L +AL++ G + ++  +MR  Q+W+WIY  G+ +F  M+++S+++R  L  
Sbjct: 19  ALVGMTRPQLRDALVEHGLVDEKKAKMRAEQLWRWIYHYGVTEFDQMTNVSKDLRQQLEA 78

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125
            F++  PEI + ++S DGTRK+L+R     +   VE+ETV+IP  +R G LCVSSQVGC+
Sbjct: 79  KFTLARPEITERQVSVDGTRKYLIR-----MASGVEVETVFIPAVARSGALCVSSQVGCT 133

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC+TGTQ LVRNLTA EI+ QV++AR  LG++P   +          R+I+NIV M
Sbjct: 134 LNCTFCHTGTQPLVRNLTAAEIVAQVMIARDDLGEWPTSNE---------DRQITNIVFM 184

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D+V  S+ + SD  G+   +RR T+STSG VP I  +GE    MLAISLHA
Sbjct: 185 GMGEPLYNLDHVSDSIDVISDHEGIGIGRRRTTVSTSGVVPKIPELGERTRSMLAISLHA 244

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LRN LVP+N+KYP+  L+DA R YP LSN++R+TFEYVMLKG+NDS  +A  L+K+
Sbjct: 245 TNDELRNELVPLNKKYPIAELMDAIRAYPDLSNSKRVTFEYVMLKGVNDSLAEARALVKL 304

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD   I  F++ + R+GY+SPIRTPRG DI AACGQL
Sbjct: 305 LKGIPAKINLIPFNPWPGSPYECSDWDQIEAFADVVNRAGYASPIRTPRGRDIFAACGQL 364

Query: 366 KSLSKRI 372
           KS S++I
Sbjct: 365 KSESQKI 371


>gi|163745013|ref|ZP_02152373.1| hypothetical protein OIHEL45_05480 [Oceanibulbus indolifex HEL-45]
 gi|161381831|gb|EDQ06240.1| hypothetical protein OIHEL45_05480 [Oceanibulbus indolifex HEL-45]
          Length = 393

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/371 (53%), Positives = 264/371 (71%), Gaps = 10/371 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ R+ + + L+  G P++  +MR  QIW+WIY  G+RDF  M+++++  R  L + 
Sbjct: 24  NLVGLTRDAMRDVLIANGTPEKQAKMRVGQIWQWIYQWGVRDFDSMTNLAKGYRAELAEK 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PE+V  + S DGTRK+L+R     I G  E+E VYIPE+ RGTLCVSSQVGC+LT
Sbjct: 84  FVIEVPEVVTRQESEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCVSSQVGCTLT 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV++AR  L ++P     E        R +SNIV+MGM
Sbjct: 139 CSFCHTGTQKLVRNLTAAEIIGQVMVARDDLDEWP-----ETGTRTEEARLLSNIVLMGM 193

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP I R   EIG  LA+S HA +
Sbjct: 194 GEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIHRTAAEIGCQLAVSFHATT 253

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++RN LVPIN+++ +E L+DA R YP +SN+ RITFEYVMLKG+NDS  DA  L++++K
Sbjct: 254 DEVRNKLVPINKRWNIEELLDALRAYPKVSNSERITFEYVMLKGVNDSDEDAHRLVELIK 313

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  Y  S    I  F++ +  +GY+SP+R PRG DI+AACGQLKS
Sbjct: 314 GIPAKINLIPFNEWPGSPYERSSNNRIRAFADIVYNAGYASPVRKPRGEDIMAACGQLKS 373

Query: 368 LSKRIPKVPRQ 378
            ++R  K  +Q
Sbjct: 374 ATERARKSRKQ 384


>gi|260432258|ref|ZP_05786229.1| radical SAM enzyme, Cfr family [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416086|gb|EEX09345.1| radical SAM enzyme, Cfr family [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 395

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/377 (54%), Positives = 267/377 (70%), Gaps = 16/377 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R+ L E L++ G P++  +MR +QIW+WIY  G+RDF  M+++++  R  L 
Sbjct: 22  KINLVGLTRDRLREVLIEHGTPEKQAKMRVNQIWQWIYQWGVRDFDQMTNLAKAYRAQLA 81

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  PE+V  +IS DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 82  EHFVIEIPEVVTRQISSDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCT 136

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183
           LTCSFC+TGTQKLVRNLTA EI+ QV++AR  L ++P  G    E        R +SNIV
Sbjct: 137 LTCSFCHTGTQKLVRNLTAAEIIGQVMMARDDLDEWPTPGAPKNET-------RLLSNIV 189

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG +LAIS 
Sbjct: 190 LMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISF 249

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++++R++LVPIN+++ +E L+ A   YP  SN+ RITFEYVML G+NDS  DA  LI
Sbjct: 250 HATTDEVRDVLVPINKRWNIEELLQALASYPNASNSERITFEYVMLDGVNDSDEDAHRLI 309

Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
             +K   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR  RG DI+AA
Sbjct: 310 DHIKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGEDIMAA 369

Query: 362 CGQLKSLSKRIPKVPRQ 378
           CGQLKS ++R  K  RQ
Sbjct: 370 CGQLKSATERARKSRRQ 386


>gi|167644157|ref|YP_001681820.1| radical SAM protein [Caulobacter sp. K31]
 gi|205829696|sp|B0T387|RLMN_CAUSK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|167346587|gb|ABZ69322.1| radical SAM enzyme, Cfr family [Caulobacter sp. K31]
          Length = 404

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/367 (53%), Positives = 267/367 (72%), Gaps = 16/367 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQR-HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +L G+ R +L  AL + G+ +    +MR +QI++W++ RG+ DF  M+D+++E R  L +
Sbjct: 27  NLSGLTRAQLLVALTESGVAEHGKAKMRATQIFRWMHHRGVTDFALMTDVAKETRARLAE 86

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125
            F++  PE+V+ ++S DGTRKWL+R     +   +E+ETVYIP   R G LCVSSQVGC+
Sbjct: 87  RFTVSRPEVVERQVSKDGTRKWLIR-----MAPGIEVETVYIPSVGRAGALCVSSQVGCT 141

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC+TGTQ LVRNLTA EI+ QV +A+  L ++P  ++          R +SNIV M
Sbjct: 142 LNCSFCHTGTQALVRNLTAAEIVAQVQIAKDDLAEWPSDKE---------DRLLSNIVFM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  +V  ++ I SD+ G+  S+RRIT+STSG VP +  +G++   MLAISLHA
Sbjct: 193 GMGEPLYNLGHVADAIEIISDNEGIGISRRRITVSTSGVVPQLEALGDKTQAMLAISLHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LR++LVP+N+KYPLE L+   R YPGLSNARR+TFEYVMLKG+NDSP +A  L+K+
Sbjct: 253 TNDALRDVLVPLNKKYPLEDLMAGVRAYPGLSNARRVTFEYVMLKGVNDSPDEARALVKL 312

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAKINLIPFNPWPG +Y+CSD   I  F   + ++GYSSPIRTPRG DILAACGQL
Sbjct: 313 IKGIPAKINLIPFNPWPGTDYVCSDWAAIEAFGAILNKAGYSSPIRTPRGRDILAACGQL 372

Query: 366 KSLSKRI 372
           KS S+++
Sbjct: 373 KSESEKV 379


>gi|16124389|ref|NP_418953.1| hypothetical protein CC_0134 [Caulobacter crescentus CB15]
 gi|221233072|ref|YP_002515508.1| radical SAM family enzyme [Caulobacter crescentus NA1000]
 gi|81621310|sp|Q9ABT6|RLMN_CAUCR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807161|sp|B8GXM4|RLMN_CAUCN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|13421243|gb|AAK22121.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220962244|gb|ACL93600.1| radical SAM family enzyme [Caulobacter crescentus NA1000]
          Length = 404

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/367 (53%), Positives = 267/367 (72%), Gaps = 16/367 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQR-HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +L G+ R +L  AL++ G+ +    +MR +QI++W++ RG+ DF  MSD+++E R  L +
Sbjct: 26  NLSGLTRPQLVAALVESGVVEHGKAKMRATQIFRWMHHRGVTDFADMSDVAKETRARLAE 85

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125
            F+I  PEIV+ ++S DGTRKWL+R     +   +E+E+VYIP   R G LCVSSQVGC+
Sbjct: 86  AFTIARPEIVERQVSKDGTRKWLIR-----MAPGIEVESVYIPGVGRAGALCVSSQVGCT 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC+TGTQ LVRNLTA EI+ QV +A+  L ++P  ++          R++SNIV M
Sbjct: 141 LNCSFCHTGTQPLVRNLTAAEIVAQVQVAKDDLAEWPSDKE---------DRQLSNIVFM 191

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N   V  ++ I SD+ G++ S+RRIT+STSG VP + ++G     MLAISLHA
Sbjct: 192 GMGEPLYNLGQVADAIEIISDNEGIAISRRRITVSTSGVVPMLEKLGSTTQAMLAISLHA 251

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LR++LVP+N+KYP+  L+   R YPGLSNARR+TFEYVMLKG+NDSP +A  L+K+
Sbjct: 252 TNDPLRDVLVPLNKKYPIAELMAGIRAYPGLSNARRVTFEYVMLKGVNDSPEEARALVKL 311

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAKINLIPFNPWPG +Y CSD   I  F+  + ++GYSSPIRTPRG DILAACGQL
Sbjct: 312 IKGIPAKINLIPFNPWPGSDYQCSDWATIEAFAAILNKAGYSSPIRTPRGRDILAACGQL 371

Query: 366 KSLSKRI 372
           KS S+++
Sbjct: 372 KSESEKV 378


>gi|254462169|ref|ZP_05075585.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium HTCC2083]
 gi|206678758|gb|EDZ43245.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 391

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/371 (53%), Positives = 267/371 (71%), Gaps = 10/371 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ R+ + +AL++ G P++  +MR  QIW+WIY  G RDF  M+++S+  R  L + 
Sbjct: 24  NLVGLTRDGMRDALIENGTPEKQAKMRVGQIWQWIYQWGKRDFDEMTNLSKTYRAELGEK 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PE+V  ++S DGTRK+L++     I G  E+E VYIPE  RGTLCVSSQVGC+LT
Sbjct: 84  FVIEVPEVVTRQVSEDGTRKYLVK-----IAGGHEVEVVYIPEDGRGTLCVSSQVGCTLT 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV++AR  L ++P     E        R +SNIV+MGM
Sbjct: 139 CSFCHTGTQKLVRNLTAGEIIGQVMIARDDLNEWP-----EQGAPKDEIRLLSNIVLMGM 193

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ IA D+ G+  S+RRITLSTSG VP IAR  EEIG  LAIS HA +
Sbjct: 194 GEPLYNFENVRDAMKIAMDAEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATT 253

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R+ LVPIN+++ +  L++A R YP +SN+ RITFEYVML G+ND+  DA  LIK+++
Sbjct: 254 DEVRDKLVPINKRWNIAELVEALRAYPRVSNSERITFEYVMLDGVNDTDADAHRLIKLIE 313

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIR PRG DI+AACGQLKS
Sbjct: 314 GIPAKINLIPFNEWPGAPYKRSSGNRIHRFADIIYKAGYASPIRKPRGEDIMAACGQLKS 373

Query: 368 LSKRIPKVPRQ 378
            ++R  K  +Q
Sbjct: 374 ATERARKSRKQ 384


>gi|148555870|ref|YP_001263452.1| radical SAM protein [Sphingomonas wittichii RW1]
 gi|205829890|sp|A5VAJ8|RLMN_SPHWW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|148501060|gb|ABQ69314.1| radical SAM enzyme, Cfr family [Sphingomonas wittichii RW1]
          Length = 402

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/366 (53%), Positives = 261/366 (71%), Gaps = 16/366 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+G+ R++L  AL    +  R  ++R  Q+W WIY RG  DF  M+DI++++R  L+Q 
Sbjct: 33  DLLGLSRDDLRMALETAQLEPRQAKLRAKQLWHWIYNRGATDFAVMTDIAKDMRGWLDQR 92

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +  PE+V+ ++S DGTRKWLLR          + E V+IP+  RGTLCVSSQVGC+L 
Sbjct: 93  FVVSRPEVVEAQVSTDGTRKWLLRS-----DDGQDYEMVFIPDADRGTLCVSSQVGCTLN 147

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC+TGT KLVRNLT  EI+ QV+LAR  LG++P   +         GR ++NIVMMGM
Sbjct: 148 CRFCHTGTMKLVRNLTPAEIVGQVMLARDALGEWPSQPE---------GRMLTNIVMMGM 198

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NFDNV+ +L +  D  GL+ SKRRITLST+G VP +AR GEEIGV LA+SLHA++
Sbjct: 199 GEPLYNFDNVRDALKLVMDGDGLALSKRRITLSTAGVVPMMARAGEEIGVNLAVSLHAIT 258

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
            ++R+ +VP+NRKY +E L+ AC  YPG +NARRITFEYVMLK  ND   DAL L+++++
Sbjct: 259 KEVRDEIVPLNRKYGIEDLLQACADYPGANNARRITFEYVMLKDKNDRDEDALELVRLIR 318

Query: 308 G--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              +PAK+NLIPFNPWPG  Y CSD   +  FS+ I ++G S+P+RTPRG DI+AACGQL
Sbjct: 319 KYRLPAKVNLIPFNPWPGAPYECSDPDRVARFSDLIFKAGISAPVRTPRGRDIMAACGQL 378

Query: 366 KSLSKR 371
           KS +++
Sbjct: 379 KSAAEK 384


>gi|254512050|ref|ZP_05124117.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium KLH11]
 gi|221535761|gb|EEE38749.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium KLH11]
          Length = 397

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/377 (54%), Positives = 266/377 (70%), Gaps = 16/377 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R+ L  AL++ G P++  +MRT QIW+WIY  G+RDF  M+++++  R  L 
Sbjct: 22  KVNLVGLTRDALRAALIEHGTPEKQAKMRTGQIWQWIYQWGVRDFAEMTNLAKAYRAQLA 81

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  PE+V  ++S DGTRK+L R     I G  E+E VYIPE  RGTLC+SSQVGC+
Sbjct: 82  EHFVIEIPEVVTRQVSEDGTRKYLCR-----IAGGHEVEVVYIPEDDRGTLCISSQVGCT 136

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183
           LTCSFC+TGTQKLVRNLTA EI+ QV++AR  L ++P  G    E        R +SNIV
Sbjct: 137 LTCSFCHTGTQKLVRNLTAAEIVGQVMMARDDLEEWPTPGAPKDET-------RLLSNIV 189

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NFDNV+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG +LAIS 
Sbjct: 190 LMGMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISF 249

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++ R++LVPIN+++ +E L+ A   YP +SN+ RITFEYVML G+NDS  DA  LI
Sbjct: 250 HATTDETRDMLVPINKRWNIEELLQALASYPKVSNSERITFEYVMLDGVNDSDADAHRLI 309

Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + +K   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR  RG DI+AA
Sbjct: 310 EHIKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGEDIMAA 369

Query: 362 CGQLKSLSKRIPKVPRQ 378
           CGQLKS ++R  K  +Q
Sbjct: 370 CGQLKSATERARKSRKQ 386


>gi|302381137|ref|YP_003816960.1| radical SAM protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302191765|gb|ADK99336.1| radical SAM enzyme, Cfr family [Brevundimonas subvibrioides ATCC
           15264]
          Length = 385

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/367 (53%), Positives = 265/367 (72%), Gaps = 16/367 (4%)

Query: 8   SLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +L G+ R  L +AL+   I P    +MR SQ+W WI+  G+ DF  M++++++ +  +  
Sbjct: 20  NLSGLTRAGLRQALIDADICPPEKAKMRASQVWGWIHHFGVTDFDAMTNMAKDAKAKMAA 79

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125
            F++  PEIV+ ++S DGTRKWL+R         +EIETVYIP+  R G LCVSSQVGC+
Sbjct: 80  AFTLARPEIVERQVSADGTRKWLIR-----TAPGIEIETVYIPDVGRAGALCVSSQVGCT 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC+TGTQ LVRNLTA EI+ QV +AR  L ++P          P   R++SNIV M
Sbjct: 135 LNCTFCHTGTQALVRNLTAAEIVAQVQVARDDLNEWPS---------PKEDRRLSNIVFM 185

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D+V  ++ I SD+ G++ S+RRIT+STSG VP +  +G     MLAISLHA
Sbjct: 186 GMGEPLYNLDHVSDAIDIISDNEGIALSRRRITVSTSGVVPQLEPLGTRTQAMLAISLHA 245

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LR++LVP+N+KYPL+ L+D  R YPG+SNARR+TFEYVMLKG+NDSP +A  L+K+
Sbjct: 246 TNDALRDVLVPLNKKYPLQQLMDGIRAYPGISNARRVTFEYVMLKGVNDSPDEARALVKL 305

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIPAK+NLIPFNPWPG +Y CSD K I  F+  + ++GY+SPIRTPRG DILAACGQL
Sbjct: 306 IEGIPAKVNLIPFNPWPGTDYECSDWKTIERFAAILNKAGYASPIRTPRGRDILAACGQL 365

Query: 366 KSLSKRI 372
           KS S+++
Sbjct: 366 KSESEKV 372


>gi|295691362|ref|YP_003595055.1| radical SAM enzyme, Cfr family [Caulobacter segnis ATCC 21756]
 gi|295433265|gb|ADG12437.1| radical SAM enzyme, Cfr family [Caulobacter segnis ATCC 21756]
          Length = 403

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/367 (53%), Positives = 266/367 (72%), Gaps = 16/367 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQR-HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +L G+ R +L  AL++ G+ +    +MR +QI++W++ RG+ DF  MSD+++E R  L +
Sbjct: 26  NLSGLTRPQLIAALVESGVVEHGKAKMRATQIFRWMHHRGVTDFASMSDVAKETRARLAE 85

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125
            F+I  PEIV+ ++S DGTRKWL+R     +   +E+E+V+IP   R G LCVSSQVGC+
Sbjct: 86  AFTIARPEIVERQVSQDGTRKWLIR-----MAPGIEVESVFIPGVGRAGALCVSSQVGCT 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC+TGTQ LVRNLTA EI+ QV +A+  LG++P  ++          R++SNIV M
Sbjct: 141 LNCSFCHTGTQPLVRNLTAAEIVAQVQVAKDDLGEWPSDKE---------DRQLSNIVFM 191

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N   V  ++ I SD+ G+  S+RRIT+STSG VP + ++G     MLAISLHA
Sbjct: 192 GMGEPLYNLGQVADAIEIISDNEGIGISRRRITVSTSGVVPMLEKLGSTTQAMLAISLHA 251

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LR++LVP+N+KYP+  L+   R YPGLSNARR+TFEYVMLKG+NDSP +A  L+ +
Sbjct: 252 TNDALRDVLVPLNKKYPIAELMAGIRAYPGLSNARRVTFEYVMLKGVNDSPPEARALVNL 311

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAKINLIPFNPWPG +Y CSD   I  F+  + ++GYSSPIRTPRG DILAACGQL
Sbjct: 312 IKGIPAKINLIPFNPWPGSDYQCSDWATIEAFAAILNKAGYSSPIRTPRGRDILAACGQL 371

Query: 366 KSLSKRI 372
           KS S+++
Sbjct: 372 KSESEKV 378


>gi|56698170|ref|YP_168542.1| radical SAM protein [Ruegeria pomeroyi DSS-3]
 gi|81348990|sp|Q5LN66|RLMN_SILPO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|56679907|gb|AAV96573.1| radical SAM enzyme, Cfr family [Ruegeria pomeroyi DSS-3]
          Length = 393

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/381 (52%), Positives = 268/381 (70%), Gaps = 16/381 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ R+ + E L+  G P++  +MR  QIW+WIY  G+RDF+ M+++++  R  L +H
Sbjct: 24  NLVGLTRDRMREVLIDHGTPEKQAKMRVGQIWQWIYQWGVRDFEAMTNLAKAYRAQLAEH 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F+I  PE++   +S DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+LT
Sbjct: 84  FTIEIPEVITRLVSEDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCTLT 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIVMM 185
           CSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P  G    E        R +SNIV+M
Sbjct: 139 CSFCHTGTQKLVRNLTAAEIVGQVMMARDDLGEWPVPGAPKDET-------RLLSNIVLM 191

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ IA D  G+  S+RRITLSTSG VP IAR  EEIG +LAIS HA
Sbjct: 192 GMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 251

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R++LVPIN+++ +E L+ A   YP +SN+ RITFEYVML G+NDS  DA  L+  
Sbjct: 252 TTDEVRDVLVPINKRWNIEELLSALAAYPKVSNSERITFEYVMLDGVNDSDADAHRLLDH 311

Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY++PIR  RG DI+AACG
Sbjct: 312 IRRYKIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYAAPIRKTRGDDIMAACG 371

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QLKS ++R  K  +Q    TG
Sbjct: 372 QLKSATERARKSKKQIEAETG 392


>gi|126738619|ref|ZP_01754324.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. SK209-2-6]
 gi|126720418|gb|EBA17124.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. SK209-2-6]
          Length = 396

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/379 (52%), Positives = 267/379 (70%), Gaps = 20/379 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R+++ E L++ G P++  +MR  QIW+WIY  G RDF  M+++++  R  L+
Sbjct: 23  KINLVGLTRDKMREVLIEHGTPEKQAKMRVGQIWQWIYQWGKRDFADMTNLAKAYRAQLD 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 83  EHFEIRIPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV----GRKISN 181
           LTCSFC+TGTQKLVRNLT  E++ QV++AR  L ++P         IP       R +SN
Sbjct: 138 LTCSFCHTGTQKLVRNLTPGEVIGQVMMARDDLEEWP---------IPGAPKDETRLLSN 188

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV+MGMGEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP IAR  +EIG +LAI
Sbjct: 189 IVLMGMGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAQEIGCLLAI 248

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           S HA +ND+R++LVPIN+++ ++ L+ A   YP  SN+ RITFEYVMLK +NDS  DA  
Sbjct: 249 SFHATTNDVRDVLVPINKRWNIDALLQALADYPKASNSERITFEYVMLKDVNDSDEDAHR 308

Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           LI+ +K   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR  RG DI+
Sbjct: 309 LIEHIKRYNIPAKINLIPFNEWPGSPYQRSSNNRIRAFANIIYQAGYASPIRKTRGDDIM 368

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQLKS ++R  K  +Q
Sbjct: 369 AACGQLKSATERARKSRKQ 387


>gi|99082854|ref|YP_615008.1| hypothetical protein TM1040_3014 [Ruegeria sp. TM1040]
 gi|122984035|sp|Q1GC70|RLMN_SILST RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|99039134|gb|ABF65746.1| hypothetical protein TM1040_3014 [Ruegeria sp. TM1040]
          Length = 397

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/377 (53%), Positives = 264/377 (70%), Gaps = 16/377 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R+ +   L++ G P++  +MR  QIW+WIY  G+RDF  M+++++  R  L 
Sbjct: 23  KINLVGLTRDRMRAVLIENGTPEKQAKMRVGQIWQWIYQWGVRDFAEMTNLAKAYRAQLE 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+
Sbjct: 83  ETFEIRIPEVVSKQVSTDGTRKYLVR-----INGGHEVEVVYIPEDDRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183
           LTCSFC+TGTQKLVRNLT  EI+ QV++AR  L ++P  G    E        R +SNIV
Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIIGQVMMARDDLEEWPTPGAPKDET-------RLLSNIV 190

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NFDNV+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG +LAIS 
Sbjct: 191 LMGMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISF 250

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N++R++LVPINR++ ++ L+ A   YP +SN+ RITFEYVML G+NDS  DA  L+
Sbjct: 251 HATTNEVRDVLVPINRRWNIDELLQALADYPKVSNSERITFEYVMLDGVNDSDEDAHRLL 310

Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
             +K   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR  RG DI+AA
Sbjct: 311 DHIKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAA 370

Query: 362 CGQLKSLSKRIPKVPRQ 378
           CGQLKS ++R  K  +Q
Sbjct: 371 CGQLKSATERARKSRKQ 387


>gi|332187261|ref|ZP_08389000.1| radical SAM superfamily protein [Sphingomonas sp. S17]
 gi|332012682|gb|EGI54748.1| radical SAM superfamily protein [Sphingomonas sp. S17]
          Length = 394

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/366 (54%), Positives = 259/366 (70%), Gaps = 16/366 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            LIG+ +++L EALL  G+  +  ++R+ QIW W+Y RG   F  M+DI++     L + 
Sbjct: 25  DLIGLTKDQLREALLSAGMELKQAKLRSKQIWHWLYNRGAVRFADMTDIAKAQHPWLEER 84

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PE+V+ ++S DGTRKWLLR P        + E V+IP+  RGTLCVSSQVGC+L 
Sbjct: 85  FVIGRPEVVEAQVSSDGTRKWLLRSP-----DGQDYEMVFIPDADRGTLCVSSQVGCTLN 139

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC+TGT +LVRNLTA EI+ QV+LAR  LG++P   +         GR ++NIVMMGM
Sbjct: 140 CRFCHTGTMRLVRNLTAGEIVGQVMLARDSLGEWPSQPE---------GRMLTNIVMMGM 190

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NFD V+ +L +  D  GL+ SKRRITLSTSG VP +AR GEEIGV LA+SLHAV+
Sbjct: 191 GEPLYNFDAVRDALKLVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGVNLAVSLHAVT 250

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
            D+R+ +VP+N+KY +E L+ AC  YPG +NARRITFEYVMLK  NDS  DA  L+++L+
Sbjct: 251 KDVRDEIVPLNKKYGIEELLQACADYPGANNARRITFEYVMLKDKNDSDADAHELVRLLR 310

Query: 308 --GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              +PAK+NLIPFNPWPG  Y CSD + I  FS+ +   G S+P+RTPRG DI AACGQL
Sbjct: 311 HYKLPAKVNLIPFNPWPGAAYECSDPERIRRFSDIVFEGGISAPVRTPRGRDIDAACGQL 370

Query: 366 KSLSKR 371
           K+ +++
Sbjct: 371 KTAAEK 376


>gi|114568582|ref|YP_755262.1| radical SAM protein [Maricaulis maris MCS10]
 gi|122317061|sp|Q0ATR3|RLMN_MARMM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|114339044|gb|ABI64324.1| 23S rRNA m(2)A-2503 methyltransferase [Maricaulis maris MCS10]
          Length = 396

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/366 (52%), Positives = 261/366 (71%), Gaps = 15/366 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           SL GM REEL    +  G+ ++  +MR  Q+W+WIY  G+  F  M++IS+++R ++   
Sbjct: 27  SLAGMTREELRLVAIDCGVEEKKAKMRAEQLWRWIYHYGVTSFDEMTNISKDLRAVIADK 86

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSL 126
           +++  P+++D ++S DGTRK+L+      +   VE ETV+IP+ +R G LCVSSQVGC+L
Sbjct: 87  YALHRPKLIDRQVSVDGTRKYLIE-----LAPGVECETVFIPDVARSGALCVSSQVGCTL 141

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC+TGTQ LVRNLTA EI+ QV++AR  L ++P   +          RKI+NIV MG
Sbjct: 142 NCTFCHTGTQALVRNLTAAEIVAQVMIARDDLDEWPTSNE---------NRKITNIVFMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N D+V  S+ I SD  G++ S+RR T+STSG VP I  +G   G MLAISLHA 
Sbjct: 193 MGEPLYNLDHVATSIDIISDGEGIAISRRRTTVSTSGVVPKIEELGARTGTMLAISLHAT 252

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+N+KYPL  L++A R YPGL N++R+TFEYVMLKG+NDS  +A  L+K+L
Sbjct: 253 NDTLRDELVPLNKKYPLVELMNAIRAYPGLGNSKRVTFEYVMLKGVNDSLAEAKALVKLL 312

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KGIPAKINLIPFNPWP   Y CSD   I  F++ + ++GY+SPIRTPRG DI AACGQL+
Sbjct: 313 KGIPAKINLIPFNPWPKSPYECSDWDQIEAFADVVNKAGYASPIRTPRGRDIFAACGQLR 372

Query: 367 SLSKRI 372
           S S+++
Sbjct: 373 SESQKV 378


>gi|114797352|ref|YP_762004.1| radical SAM protein [Hyphomonas neptunium ATCC 15444]
 gi|122942041|sp|Q0BWY9|RLMN_HYPNA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|114737526|gb|ABI75651.1| radical SAM enzyme, Cfr family [Hyphomonas neptunium ATCC 15444]
          Length = 387

 Score =  401 bits (1030), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/368 (52%), Positives = 260/368 (70%), Gaps = 15/368 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L G+    L+  +  +G+  +   MR  QI +WI+  G  DF  M+DI++++R  L 
Sbjct: 17  KKRLTGLSVPALKAEMEALGLEPKAANMRARQIRRWIHHFGTTDFAAMTDIAKDLRAQLA 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
           + F +  PEI D ++S DGT+KWL R+     G  +E E+VYIP+  + G LCVSSQVGC
Sbjct: 77  EKFEVERPEIADHQVSRDGTQKWLTRY-----GPGIEGESVYIPDVGKAGALCVSSQVGC 131

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ LVRNLTA EI+ QV++AR  L ++P    IE        R+++NIV 
Sbjct: 132 TLNCTFCHTGTQALVRNLTAAEIVQQVIIARDALSEWPSS--IEE-------RRLTNIVF 182

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N DNV +++   SD  G++  +RRIT+ST+G  P I  +GE  G MLAISLH
Sbjct: 183 MGMGEPLYNLDNVAEAIDTISDGDGMAIGRRRITVSTAGVAPKIPELGERTGAMLAISLH 242

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLRN LVP+NRKY ++ L DA R YPGL NA+R+TFEYVMLKGIND+  +A +L+K
Sbjct: 243 ATNNDLRNELVPLNRKYDIQTLFDAIRAYPGLGNAKRVTFEYVMLKGINDTLAEARDLVK 302

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KG+P+KINLIPFNPWPG  Y CSD + I  F+E + R+GY+SPIRTPRG DILAACGQ
Sbjct: 303 LMKGVPSKINLIPFNPWPGSPYECSDWETIEEFAEVLNRAGYASPIRTPRGRDILAACGQ 362

Query: 365 LKSLSKRI 372
           L+S S ++
Sbjct: 363 LRSESVKV 370


>gi|259417568|ref|ZP_05741487.1| radical SAM enzyme, Cfr family [Silicibacter sp. TrichCH4B]
 gi|259346474|gb|EEW58288.1| radical SAM enzyme, Cfr family [Silicibacter sp. TrichCH4B]
          Length = 397

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/377 (52%), Positives = 267/377 (70%), Gaps = 16/377 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R+ + E L++ G P++  +MR  QIW+WIY  G+R+F  M+++++  R  L 
Sbjct: 23  KINLVGLTRDRMREVLMEHGTPEKQAKMRVGQIWQWIYQWGVRNFSEMTNLAKAYRAQLE 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+
Sbjct: 83  ETFEIRIPEVVSKQVSTDGTRKYLVR-----INGGHEVEVVYIPEDDRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183
           LTCSFC+TGTQKLVRNLT  EI+ QV++AR  L ++P  G    E        R +SNIV
Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIIGQVMMARDDLEEWPTPGAPKDET-------RLLSNIV 190

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG +LAIS 
Sbjct: 191 LMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISF 250

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N++R++LVPINR++ ++ L+ +  +YP +SN+ RITFEYVML G+NDS  DA  L+
Sbjct: 251 HATTNEVRDVLVPINRRWNIDELLQSLANYPKVSNSERITFEYVMLDGVNDSDEDAHRLL 310

Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + +K   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR  RG DI+AA
Sbjct: 311 EHIKRYDIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAA 370

Query: 362 CGQLKSLSKRIPKVPRQ 378
           CGQLKS ++R  K  +Q
Sbjct: 371 CGQLKSATERARKSRKQ 387


>gi|254477449|ref|ZP_05090835.1| radical SAM enzyme, Cfr family [Ruegeria sp. R11]
 gi|214031692|gb|EEB72527.1| radical SAM enzyme, Cfr family [Ruegeria sp. R11]
          Length = 396

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/377 (53%), Positives = 265/377 (70%), Gaps = 16/377 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ RE++ + L++ G P++  +MR  QIW+WIY  G RDF+ M+++++  R  L 
Sbjct: 23  KINLVGLTREQMRDVLIENGTPEKQAKMRVGQIWQWIYQWGKRDFEEMTNLAKGYRAQLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLCVSSQVGC+
Sbjct: 83  ETFEISVPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEDDRGTLCVSSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183
           LTCSFC+TGTQKLVRNLT  EI+ QV++AR  L ++P  G    E        R +SNIV
Sbjct: 138 LTCSFCHTGTQKLVRNLTPGEIIGQVMMARDDLEEWPTPGAPKDET-------RLLSNIV 190

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IAR  +EIG +LAIS 
Sbjct: 191 LMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCLLAISF 250

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N++R++LVPIN+++ ++ L+ A   YP  SN+ RITFEYVML G+NDS  DA  LI
Sbjct: 251 HATTNEVRDVLVPINKRWNIDELLQALADYPKASNSERITFEYVMLDGVNDSDEDAHRLI 310

Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
             +K   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR  RG DI+AA
Sbjct: 311 DHIKRYKIPAKINLIPFNEWPGSPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAA 370

Query: 362 CGQLKSLSKRIPKVPRQ 378
           CGQLKS ++R  K  +Q
Sbjct: 371 CGQLKSATERARKSRKQ 387


>gi|254292458|ref|YP_003058481.1| radical SAM enzyme, Cfr family [Hirschia baltica ATCC 49814]
 gi|254040989|gb|ACT57784.1| radical SAM enzyme, Cfr family [Hirschia baltica ATCC 49814]
          Length = 390

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/363 (53%), Positives = 262/363 (72%), Gaps = 15/363 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L G+   +L E + +IGI ++  +MR +Q+  W++  G+ DF  M++I++++R  L ++
Sbjct: 21  NLSGLSLVKLRERMEEIGIDKKKAKMRANQVSHWMHNFGVTDFDDMTNIAKDMRAKLVEN 80

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSL 126
             I  P+I + K+S DGT+KWL RF     G  +E E+V+IP+ +R G LCVSSQVGC+L
Sbjct: 81  HIIARPDITEHKVSVDGTQKWLSRF-----GPGIEAESVFIPDVARSGALCVSSQVGCTL 135

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           +C+FC+TGTQK+VRNLTA+EI+ QVL+AR  LG++P          PS  RK++NIV MG
Sbjct: 136 SCTFCHTGTQKMVRNLTAQEIVAQVLVARDTLGEWP---------TPSENRKLTNIVFMG 186

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N DNV +++   SD  G+S  +RRIT+ST+G  P I  +G     MLAISLHA 
Sbjct: 187 MGEPLYNLDNVVEAIDTISDCEGISIGRRRITVSTAGVAPKIPELGARTNAMLAISLHAT 246

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++DLR+ +VPIN+KY LE L DA R YP L N++R+TFEYVMLK +NDS  +A++LIK+L
Sbjct: 247 NDDLRDEIVPINKKYNLECLFDAIRSYPDLGNSKRVTFEYVMLKDVNDSLAEAVDLIKLL 306

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KG+PAKINLIPFNPWPG  Y CSD   I TF+E + R+G S+PIRTPRG DI AACGQL+
Sbjct: 307 KGLPAKINLIPFNPWPGSPYECSDWDKIETFAEVLNRAGLSAPIRTPRGRDIFAACGQLR 366

Query: 367 SLS 369
           S S
Sbjct: 367 SES 369


>gi|144899244|emb|CAM76108.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 380

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/369 (54%), Positives = 257/369 (69%), Gaps = 19/369 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +LIG+ R++L   +  IG        R  Q+W W+Y RG  DF  M+ IS+ ++  L
Sbjct: 6   QKTNLIGLSRDQLTAEMASIG----EKPFRAKQLWHWLYNRGETDFLKMTSISKVMQERL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQV 122
            + + +  P +  E  S D TRKWLL+F         E ETVYIP++   RG +C+SSQV
Sbjct: 62  AERYVVRRPLVERELTSVDTTRKWLLKF-----DDGNEAETVYIPDEDEQRGAVCISSQV 116

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+LTC FC+TGTQ LVRNLTA EI+ Q +LAR   G++P  +D          R +SNI
Sbjct: 117 GCTLTCKFCHTGTQLLVRNLTAAEIVGQFMLARDSYGEWPTPDD--------TTRLLSNI 168

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL NFDNV  +L I  D  G+  S+RRITLSTSG VP + R G E+GV LAIS
Sbjct: 169 VMMGMGEPLYNFDNVATALKIIMDGEGIGISRRRITLSTSGVVPMMGRAGAELGVNLAIS 228

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHAV++++RN ++PIN+KYPL+ L+ ACR YPG SNARRITFEYVMLKGINDS  DA  L
Sbjct: 229 LHAVTDEVRNQIMPINKKYPLKELMQACRDYPGASNARRITFEYVMLKGINDSLADAREL 288

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           ++++KG+PAK NLIPFNPWPG +Y CS  +DI  FS+ I+ +GYS+PIR  RG DILAAC
Sbjct: 289 LRLVKGLPAKFNLIPFNPWPGSDYECSSMRDIRAFSDLIQDNGYSAPIRKSRGADILAAC 348

Query: 363 GQLKSLSKR 371
           GQL+S S+R
Sbjct: 349 GQLRSESQR 357


>gi|296534699|ref|ZP_06897089.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957]
 gi|296264972|gb|EFH11207.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957]
          Length = 409

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/368 (52%), Positives = 254/368 (69%), Gaps = 18/368 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ REEL   ++ IG        R  Q+W WIY +G+ DF  MS I++ ++  L 
Sbjct: 41  RRDLVGLSREELVAEMVAIG----EKPFRAKQLWHWIYHQGVTDFSQMSTIAKAMQGKLA 96

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVG 123
           + F +  P +  E+ S DGTRKWL  F         ++ETVYIP  E+ RG +CVS+QVG
Sbjct: 97  ERFVVGRPGVTTEQTSTDGTRKWLFGF-----RDGQQVETVYIPDPEEDRGAVCVSTQVG 151

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C FC+TGTQKLVRNL A EI+ Q + AR   G++P   D          R +S IV
Sbjct: 152 CTLSCKFCHTGTQKLVRNLGAAEIVGQFMAARDSYGEWPSPTD-------GTPRLLSTIV 204

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++NV K++ I  D  G++ S+RRITLSTSG VP + R G E+GV LA+SL
Sbjct: 205 IMGMGEPLYNYENVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGAELGVGLAVSL 264

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV ND+R+ +VP+NRKYP+E L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L+
Sbjct: 265 HAVRNDIRDEIVPLNRKYPIEELMAACRRYPGASNARRITFEYVMLKGVNDSEADARELV 324

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L+GIPAK+NLIPFNPWPG  Y  S    I  F+  ++ +GY+SPIRTPRG DILAACG
Sbjct: 325 RLLQGIPAKVNLIPFNPWPGSPYETSSNNAIHRFARIVQEAGYASPIRTPRGRDILAACG 384

Query: 364 QLKSLSKR 371
           QLK+ S+R
Sbjct: 385 QLKTESER 392


>gi|297183711|gb|ADI19836.1| predicted Fe-S cluster redox enzyme [uncultured alpha
           proteobacterium EB000_37G09]
          Length = 388

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/369 (51%), Positives = 260/369 (70%), Gaps = 18/369 (4%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L + SL+    + LE  ++ +G+P    + R  Q+W W++  G+ DF  M+D+ + ++ L
Sbjct: 22  LLRRSLLSFEPDALEAEMIALGLP----KFRARQLWGWVWRHGVTDFSDMTDLGKPLQAL 77

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L++ F +  P +   + S DGT KWL++     +    E ETVYIP+  RGTLC+SSQ+G
Sbjct: 78  LSERFHVDRPAVSRRQDSSDGTIKWLIK-----LSDGQEAETVYIPDDGRGTLCISSQIG 132

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTCSFC+TGTQ+LVRNL+ +EI  Q+LLA   LGD+P             GR+++NIV
Sbjct: 133 CTLTCSFCHTGTQRLVRNLSVDEICGQILLAMDELGDWPATRP---------GRRLTNIV 183

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N+D V  ++ I   + G+  SKRRITLSTSG VP I R G ++GV LAISL
Sbjct: 184 LMGMGEPLYNYDYVASAMRIIMSNEGVGVSKRRITLSTSGIVPEITRCGNDLGVNLAISL 243

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV ++LRN LVPINRKY L+ LID  R YPGLSNARR+T+EYVM+ G+NDS  DA  L+
Sbjct: 244 HAVRDELRNTLVPINRKYNLKTLIDTVRAYPGLSNARRVTWEYVMIDGVNDSEADARALV 303

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIP+KINLIPFNPWPG +Y CS+ + I  F++ + ++GY+SP+RTPRG DILAACG
Sbjct: 304 RLISGIPSKINLIPFNPWPGTDYKCSNDETIDKFAKIVMKAGYASPVRTPRGRDILAACG 363

Query: 364 QLKSLSKRI 372
           QLKS S R+
Sbjct: 364 QLKSDSVRL 372


>gi|87199457|ref|YP_496714.1| hypothetical protein Saro_1436 [Novosphingobium aromaticivorans DSM
           12444]
 gi|123749853|sp|Q2G8E3|RLMN_NOVAD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|87135138|gb|ABD25880.1| 23S rRNA m(2)A-2503 methyltransferase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 429

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/380 (51%), Positives = 260/380 (68%), Gaps = 21/380 (5%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            LIG+ R+++ E   + G+  +  ++R  Q++ W+Y RG+ DF  M+DI++ +R  L + 
Sbjct: 37  DLIGLPRKQIAELFAQAGLDAKAAKLRAKQVFHWLYHRGVTDFDAMTDIAKTMRPWLAER 96

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PEIV+ ++S DGTRKWLLR   +      + E V+IP+  RGTLCVSSQVGC+L 
Sbjct: 97  FVIGRPEIVEAQVSTDGTRKWLLRTADKH-----DFEMVFIPDADRGTLCVSSQVGCTLN 151

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--------------GCEDIEGMVIP 173
           C FC+TGT +LVRNLT  EI+ QV+LAR  LG++P                +D +     
Sbjct: 152 CRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGANDSRVATMAGLDFDDEDEGSYT 211

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
           S GR ++NIVMMGMGEPL NFDNV+ +L +  D  GL+ SKRRITLSTSG VP + R GE
Sbjct: 212 SDGRLLTNIVMMGMGEPLYNFDNVRDALKLVMDGDGLALSKRRITLSTSGVVPMMERCGE 271

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
           EIGV LA+SLHAV+ D+R+ +VPINRKY +E L+ AC  YPG SNARRITFEYVMLK  N
Sbjct: 272 EIGVNLAVSLHAVTKDVRDEIVPINRKYGIEELLQACADYPGASNARRITFEYVMLKDKN 331

Query: 294 DSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
           DS   A  L+++++   +PAK+NLIPFNPWPG  Y CS    I +F+  +  +G S+P+R
Sbjct: 332 DSDDHARELVRLIRQYKLPAKVNLIPFNPWPGAPYECSSPDRIKSFANIVFEAGISAPVR 391

Query: 352 TPRGLDILAACGQLKSLSKR 371
           TPRG DI AACGQLK+ S+R
Sbjct: 392 TPRGRDIDAACGQLKTASER 411


>gi|218461404|ref|ZP_03501495.1| hypothetical protein RetlK5_18727 [Rhizobium etli Kim 5]
          Length = 278

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/263 (73%), Positives = 221/263 (84%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           TLC+SSQVGC+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+
Sbjct: 1   TLCISSQVGCTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPA 60

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
            GRK+SNIVMMGMGEPL NFD VK++L IA+D  GLS SKRR+TLSTSG VP I R GEE
Sbjct: 61  EGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEE 120

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           IGVMLAISLHAV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +ND
Sbjct: 121 IGVMLAISLHAVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVND 180

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           S  DA  LIK+LKG+PAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPR
Sbjct: 181 SLEDARGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPR 240

Query: 355 GLDILAACGQLKSLSKRIPKVPR 377
           G DILAACGQLKS S+R+ K  R
Sbjct: 241 GRDILAACGQLKSESERMRKTER 263


>gi|103486196|ref|YP_615757.1| hypothetical protein Sala_0703 [Sphingopyxis alaskensis RB2256]
 gi|122985201|sp|Q1GV98|RLMN_SPHAL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|98976273|gb|ABF52424.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
          Length = 420

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/385 (52%), Positives = 257/385 (66%), Gaps = 27/385 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+G+ R+ +   L++ G+  +  ++R  QIW WIY RG+ DF GM+DI++ +R  L   
Sbjct: 24  DLVGLSRDAIGGVLVEAGLDAKAAKLRAKQIWHWIYHRGVTDFMGMTDIAKAMRPWLTDR 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  P + + ++S DGTRKWLL           E E V+IP+  RGTLCVSSQVGC+L 
Sbjct: 84  FIIGRPTVREAQVSSDGTRKWLL-----AAADGQEYEMVFIPDADRGTLCVSSQVGCTLN 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV------------ 175
           C FC+TGT +LVRNL A EI+ QVLLAR  LG++P   ++ G    S             
Sbjct: 139 CRFCHTGTMRLVRNLGAGEIVGQVLLARDALGEWPKG-NMAGFGAGSDADPEDDDADDDA 197

Query: 176 -------GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
                  GR ++NIVMMGMGEPL NFD VK +L I  D  GL+ SKRRITLSTSG VP +
Sbjct: 198 VGHYTADGRMLTNIVMMGMGEPLYNFDEVKAALKIVMDGDGLALSKRRITLSTSGVVPMM 257

Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
           AR GEEIGV LA+SLHAVS ++R+ +VP+NRKY +E L+ AC  YPG +NARRITFEYVM
Sbjct: 258 ARAGEEIGVNLAVSLHAVSKEIRDEIVPLNRKYGIEELLQACADYPGANNARRITFEYVM 317

Query: 289 LKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346
           LK  ND   DA  L++++K   +PAK+NLIPFNPWPG  Y CS  + +  FS  I ++G 
Sbjct: 318 LKDKNDRDEDARELVRLIKQYKLPAKVNLIPFNPWPGAPYECSTPERVRAFSNLIFKAGI 377

Query: 347 SSPIRTPRGLDILAACGQLKSLSKR 371
           S+PIRTPRG DI+AACGQLKS + R
Sbjct: 378 SAPIRTPRGRDIMAACGQLKSAATR 402


>gi|85708979|ref|ZP_01040045.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. NAP1]
 gi|85690513|gb|EAQ30516.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. NAP1]
          Length = 416

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/372 (52%), Positives = 261/372 (70%), Gaps = 13/372 (3%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            LIG+ R  + E   + G+ +R  ++R  Q++ W+Y RG+ DF+ M+DIS+ +R  L + 
Sbjct: 31  DLIGLPRPRIRELFAEAGLDERQAKLRAKQVFHWLYHRGVTDFEAMTDISKTMRPWLAER 90

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  P IV+ + S DGTRKWLL+          + E V+IP+  RGTLCVSSQVGC+L 
Sbjct: 91  FVIGRPNIVEAQHSSDGTRKWLLQ-----TDDGHDFEMVFIPDADRGTLCVSSQVGCTLN 145

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-----GCEDIEGM-VIPSVGRKISN 181
           C+FC+TGT +LVRNLT  EI+ QV+LAR  LG++P     G ++ E +    + GR ++N
Sbjct: 146 CTFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGVMDGLDEAEDVGHYTADGRLLTN 205

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IVMMGMGEPL NFD+V+ +L++  D  GL+ SKRRITLSTSG VP + R GEEIGV LA+
Sbjct: 206 IVMMGMGEPLYNFDHVRDALNLVMDGDGLALSKRRITLSTSGVVPAMERCGEEIGVNLAV 265

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV+ D+R+ +VP+N+KY +E L+ AC  YPG SNARRITFEYVMLK  NDS  DA  
Sbjct: 266 SLHAVTKDVRDEIVPLNKKYGIEELLQACADYPGASNARRITFEYVMLKDKNDSDEDARE 325

Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L+++L+   +PAK+NLIPFNPWPG  Y CS  + I  FS  +   G S+P+RTPRG DI 
Sbjct: 326 LVRLLRKFDLPAKVNLIPFNPWPGANYECSTPERIKAFSNIVFEGGISAPVRTPRGRDID 385

Query: 360 AACGQLKSLSKR 371
           AACGQLK+ +++
Sbjct: 386 AACGQLKTAAQK 397


>gi|307295042|ref|ZP_07574884.1| radical SAM enzyme, Cfr family [Sphingobium chlorophenolicum L-1]
 gi|306879516|gb|EFN10734.1| radical SAM enzyme, Cfr family [Sphingobium chlorophenolicum L-1]
          Length = 419

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/374 (51%), Positives = 262/374 (70%), Gaps = 15/374 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+G+ R +++ AL + G+  +  ++R+ Q++ W+Y RG  DF  M+D+++ +R  + + 
Sbjct: 33  DLMGLSRPQIKSALEEAGLDVKQAKLRSKQLFHWLYHRGETDFDAMTDLAKPMRGWMAER 92

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +  PE+V+ ++S DGTRKWLLR          + E V+IP+  RGTLCVSSQVGC+L 
Sbjct: 93  FVVGRPEVVEAQVSSDGTRKWLLRS-----DDGQDYEMVFIPDADRGTLCVSSQVGCTLN 147

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--------GCEDIEGMVIPSVGRKI 179
           C FC+TGT +LVRNLT  EI+ QV+LAR  LG++P          E  +       GR +
Sbjct: 148 CRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGSMASVNDDEADDASQYSPDGRML 207

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +NIVMMGMGEPL NFD+V+ +L +  D  GL+ SKRRITLSTSG VP +AR GEEIGV L
Sbjct: 208 TNIVMMGMGEPLYNFDHVRDALKVVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGVNL 267

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHAV+ D+R+ LVP+NRKY +E L+ AC  YPG +NARRITFEYVM++  NDS  DA
Sbjct: 268 AVSLHAVTKDVRDELVPLNRKYGIEDLLQACADYPGANNARRITFEYVMIRDKNDSDDDA 327

Query: 300 LNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
             L+++L+   +PAK+NLIPFNPWPG +Y CS  + I  FS+ +   G S+P+RTPRG D
Sbjct: 328 RELVRLLRQYKLPAKVNLIPFNPWPGTDYECSTPERIRRFSDIVFEGGISAPVRTPRGRD 387

Query: 358 ILAACGQLKSLSKR 371
           I+AACGQLKS S++
Sbjct: 388 IMAACGQLKSASEK 401


>gi|326387224|ref|ZP_08208834.1| hypothetical protein Y88_1274 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208405|gb|EGD59212.1| hypothetical protein Y88_1274 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 421

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/379 (52%), Positives = 258/379 (68%), Gaps = 20/379 (5%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+G+ R+ + E     G+  R  ++R  Q++ WIY RG+ DF  M+DI++ +R  L++ 
Sbjct: 30  DLVGLPRKAITELFATAGLDARAAKLRAKQVFHWIYHRGVTDFDAMTDIAKTMRPWLSER 89

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  P IV  + S DGTRKWLLR          + E V+IP+  RGTLCVSSQVGC+L 
Sbjct: 90  FVIDRPSIVTAQASSDGTRKWLLR-----TADNHDFEMVFIPDADRGTLCVSSQVGCTLN 144

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC------------EDIEG-MVIPS 174
           C FC+TGT +LVRNLT  EI+ QV+LAR  LG++P              +D EG     +
Sbjct: 145 CRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGGGTMAGLDEDPEDDPEGAQAYTA 204

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
            GR ++NIVMMGMGEPL NFDNV+ +L I  D  GL+ SKRRITLSTSG VP + R G+E
Sbjct: 205 DGRLLTNIVMMGMGEPLYNFDNVRDALKIVMDGDGLALSKRRITLSTSGVVPMMDRCGDE 264

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           IGV LA+SLHAV+ ++R+ +VPINRKY LE L+ AC  YPG SNARRITFEYVMLK  ND
Sbjct: 265 IGVNLAVSLHAVTKEVRDEIVPINRKYGLEELLSACAAYPGASNARRITFEYVMLKDKND 324

Query: 295 SPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           S  DA  L+++++   +PAK+NLIPFNPWPG  Y CS  + I  FS+ +  +G S+P+RT
Sbjct: 325 SDEDARELVRLIRKYKLPAKVNLIPFNPWPGAPYECSTPERIKRFSDIVFEAGISAPVRT 384

Query: 353 PRGLDILAACGQLKSLSKR 371
           PRG DI AACGQLK+ ++R
Sbjct: 385 PRGRDIDAACGQLKTAAER 403


>gi|94495790|ref|ZP_01302369.1| hypothetical protein SKA58_14447 [Sphingomonas sp. SKA58]
 gi|94424482|gb|EAT09504.1| hypothetical protein SKA58_14447 [Sphingomonas sp. SKA58]
          Length = 420

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/379 (50%), Positives = 264/379 (69%), Gaps = 16/379 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+G+ R +++    + G+  +  ++R+ QI+ W+Y RG  DF  M+D+++ +R  + + 
Sbjct: 33  DLMGLSRAQIKSVFEEAGLDAKAAKLRSKQIFHWLYHRGETDFDAMTDLAKPMRGWMAER 92

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +  P++V+ ++S DGTRKWLLR          + E V+IP+  RGTLCVSSQVGC+L 
Sbjct: 93  FVVGRPQVVEAQVSSDGTRKWLLRS-----DDGQDYEMVFIPDADRGTLCVSSQVGCTLN 147

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP------GCEDIEG---MVIPSVGRK 178
           CSFC+TGT +LVRNLT  EI+ QV+LAR  LG++P        +D EG       S GR 
Sbjct: 148 CSFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGSMASANDDDEGDEASHYTSDGRM 207

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           ++NIVMMGMGEPL NFD+V+ +L +  D  GL+ SKRRITLSTSG +P +AR GEEIGV 
Sbjct: 208 LTNIVMMGMGEPLYNFDHVRDALKVVMDGDGLALSKRRITLSTSGVIPMMARAGEEIGVN 267

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLH V+ D+R+ LVP+NRK+ +E L+ AC  YPG +NARRITFEYVM+K  NDS  D
Sbjct: 268 LAVSLHGVTKDVRDELVPLNRKFGIEELLAACAAYPGANNARRITFEYVMIKDKNDSDAD 327

Query: 299 ALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
           A  L+++L+   +PAK+NLIPFNPWPG +Y CS  + I  FS+ +   G S+P+RTPRG 
Sbjct: 328 ARELVRLLRHYKLPAKVNLIPFNPWPGTDYECSTPERIRRFSDIVFEGGISAPVRTPRGR 387

Query: 357 DILAACGQLKSLSKRIPKV 375
           DI+AACGQLKS S++  K 
Sbjct: 388 DIMAACGQLKSASEKKSKA 406


>gi|294010894|ref|YP_003544354.1| hypothetical protein SJA_C1-09080 [Sphingobium japonicum UT26S]
 gi|292674224|dbj|BAI95742.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
          Length = 419

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/374 (51%), Positives = 262/374 (70%), Gaps = 15/374 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+G+ R ++  AL + G+  +  ++R+ Q++ W+Y RG  DF  M+D+++ +R  + + 
Sbjct: 33  DLMGLSRPQIRGALEEAGLDVKQAKLRSKQLFHWLYHRGETDFDAMTDLAKPMRGWMAER 92

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +  PE+V+ ++S DGTRKWLLR          + E V+IP+  RGTLCVSSQVGC+L 
Sbjct: 93  FVVGRPEVVEAQVSSDGTRKWLLRS-----DDGQDYEMVFIPDADRGTLCVSSQVGCTLN 147

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--------GCEDIEGMVIPSVGRKI 179
           C FC+TGT +LVRNLT  EI+ QV+LAR  LG++P          E  +     + GR +
Sbjct: 148 CRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGSMASANDDEADDASQYSTDGRML 207

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +NIVMMGMGEPL NFD+V+ +L +  D  GL+ SKRRITLSTSG VP +AR GEEIGV L
Sbjct: 208 TNIVMMGMGEPLYNFDHVRDALKVVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGVNL 267

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHAV+ D+R+ LVP+N+KY +E L+ AC  YPG +NARRITFEYVM+K  NDS  DA
Sbjct: 268 AVSLHAVTKDVRDELVPLNKKYGIEDLLQACADYPGANNARRITFEYVMIKDKNDSDADA 327

Query: 300 LNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
             L+++L+   +PAK+NLIPFNPWPG +Y CS  + I  FS+ +   G S+P+RTPRG D
Sbjct: 328 RELVRLLRQYKLPAKVNLIPFNPWPGTDYECSTPERIRRFSDIVFEGGISAPVRTPRGRD 387

Query: 358 ILAACGQLKSLSKR 371
           I+AACGQLKS S++
Sbjct: 388 IMAACGQLKSASEK 401


>gi|260752519|ref|YP_003225412.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551882|gb|ACV74828.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 391

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/369 (51%), Positives = 258/369 (69%), Gaps = 16/369 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+G+ RE++  AL   G+ ++  ++RT Q+W W+Y RG   F GM+DI++ +R  L +H
Sbjct: 29  DLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLAEH 88

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F+I  PE+V  +IS DGTRKWLL+          + E V+IP+  RGTLC+SSQ+GC+L 
Sbjct: 89  FAISRPEVVTMQISTDGTRKWLLK-----TDDGYDYEMVFIPDADRGTLCISSQIGCTLN 143

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TGT +LVRNLT  EI+ Q++LAR  L ++P   +         GR ++N+VMMGM
Sbjct: 144 CRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPSKPE---------GRLLTNVVMMGM 194

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NFDNV+ +L +  D  G++ S+RRITLSTSG VP +AR GEEIGV LA+SLHAV+
Sbjct: 195 GEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHAVT 254

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             +R+ +VPIN+KY ++ L+ AC  YPG++NARRITFEYVMLK  NDS  DA  L+++L+
Sbjct: 255 KAVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRLLQ 314

Query: 308 --GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              +PAK+NLIPFNPWP   Y CS  + I  FSE +  +G S+P+R  RG DI+AACGQL
Sbjct: 315 YYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACGQL 374

Query: 366 KSLSKRIPK 374
           KS ++R  K
Sbjct: 375 KSAAERQSK 383


>gi|241761759|ref|ZP_04759845.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373673|gb|EER63233.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 391

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/369 (51%), Positives = 258/369 (69%), Gaps = 16/369 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+G+ RE++  AL   G+ ++  ++RT Q+W W+Y RG   F GM+DI++ +R  L +H
Sbjct: 29  DLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLAEH 88

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F+I  PE+V  +IS DGTRKWLL+          + E V+IP+  RGTLC+SSQ+GC+L 
Sbjct: 89  FAISRPEVVTMQISTDGTRKWLLK-----TDDGYDYEMVFIPDADRGTLCISSQIGCTLN 143

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TGT +LVRNLT  EI+ Q++LAR  L ++P   +         GR ++N+VMMGM
Sbjct: 144 CRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPSKPE---------GRLLTNVVMMGM 194

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NFDNV+ +L +  D  G++ S+RRITLSTSG VP +AR GEEIGV LA+SLHAV+
Sbjct: 195 GEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHAVT 254

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             +R+ +VPIN+KY ++ L+ AC  YPG++NARRITFEYVMLK  NDS  DA  L+++L+
Sbjct: 255 KAVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRLLQ 314

Query: 308 --GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              +PAK+NLIPFNPWP   Y CS  + I  FSE +  +G S+P+R  RG DI+AACGQL
Sbjct: 315 YYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACGQL 374

Query: 366 KSLSKRIPK 374
           KS ++R  K
Sbjct: 375 KSAAERQSK 383


>gi|85374384|ref|YP_458446.1| Fe-S-cluster redox protein [Erythrobacter litoralis HTCC2594]
 gi|123409605|sp|Q2N9J2|RLMN_ERYLH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|84787467|gb|ABC63649.1| predicted Fe-S-cluster redox enzyme [Erythrobacter litoralis
           HTCC2594]
          Length = 418

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/372 (51%), Positives = 259/372 (69%), Gaps = 13/372 (3%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+G+ +  ++E   + G+  +  ++R+ Q++ W+Y RG+ DF+ M+DI++ +R  L + 
Sbjct: 31  DLMGLPKARIQELFAEAGLDAKQAKLRSKQVYHWLYHRGVTDFEAMTDIAKTMRPWLAER 90

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +  P +V+ + S DGTRKWLL+          + E V+IP+  RGTLCVSSQVGC+L 
Sbjct: 91  FIVGRPNVVEAQHSTDGTRKWLLQ-----TDDGHDFEMVFIPDADRGTLCVSSQVGCTLN 145

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-----GCEDIEGMVIPSV-GRKISN 181
           C FC+TGT +LVRNLT  EI+ QV+LAR  LG++P     G +D+E     S  GR ++N
Sbjct: 146 CRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGRMDGLDDVEDTGHYSADGRLLTN 205

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IVMMGMGEPL NFDNV+ +L +  D  GL+ SKRRITLSTSG VP + R GEEIGV LA+
Sbjct: 206 IVMMGMGEPLYNFDNVRDALKLVMDGEGLALSKRRITLSTSGVVPMMERCGEEIGVNLAV 265

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV+ D+R+ +VPIN+KY +E L+ AC  YPG SNARRITFEYVMLK  ND+   A  
Sbjct: 266 SLHAVTKDIRDEIVPINKKYGIEELLQACADYPGASNARRITFEYVMLKDKNDTDEHARE 325

Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L+++LK   +PAK+NLIPFNPWPG  Y CS  + I  FS  +   G S+P+RTPRG DI 
Sbjct: 326 LVRLLKQYNLPAKVNLIPFNPWPGAAYECSTPERIRAFSNIVFEGGISAPVRTPRGRDID 385

Query: 360 AACGQLKSLSKR 371
           AACGQLK+ +++
Sbjct: 386 AACGQLKTAAQK 397


>gi|56551928|ref|YP_162767.1| Cfr family radical SAM enzyme [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|81355066|sp|Q5NNQ4|RLMN_ZYMMO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|56543502|gb|AAV89656.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 391

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/369 (51%), Positives = 258/369 (69%), Gaps = 16/369 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+G+ RE++  AL   G+ ++  ++RT Q+W W+Y RG   F GM+DI++ +R  L +H
Sbjct: 29  DLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLAEH 88

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F+I  PE+V  +IS DGTRKWLL+          + E V+IP+  RGTLC+SSQ+GC+L 
Sbjct: 89  FAISRPEVVTMQISTDGTRKWLLK-----TDDGYDYEMVFIPDADRGTLCISSQIGCTLN 143

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TGT +LVRNLT  EI+ Q++LAR  L ++P   +         GR ++N+VMMGM
Sbjct: 144 CRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPSKPE---------GRLLTNVVMMGM 194

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NFDNV+ +L +  D  G++ S+RRITLSTSG VP +AR GEEIGV LA+SLHAV+
Sbjct: 195 GEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHAVT 254

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             +R+ +VPIN+KY ++ L+ AC  YPG++NARRITFEYVMLK  NDS  DA  L+++L+
Sbjct: 255 KVVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRLLQ 314

Query: 308 --GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              +PAK+NLIPFNPWP   Y CS  + I  FSE +  +G S+P+R  RG DI+AACGQL
Sbjct: 315 YYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACGQL 374

Query: 366 KSLSKRIPK 374
           KS ++R  K
Sbjct: 375 KSAAERQSK 383


>gi|83310223|ref|YP_420487.1| Fe-S-cluster redox protein [Magnetospirillum magneticum AMB-1]
 gi|82945064|dbj|BAE49928.1| Predicted Fe-S-cluster redox enzyme [Magnetospirillum magneticum
           AMB-1]
          Length = 546

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/368 (52%), Positives = 256/368 (69%), Gaps = 19/368 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +LIG+ R++L   +  IG        R  Q+W W+Y RG  DF  M+ IS+ +   L 
Sbjct: 176 KTNLIGLSRDQLIAEMASIG----EKPFRAKQLWHWMYNRGETDFAKMTSISKSMHGALA 231

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123
           + + +  P +  E IS D TRKWLL+F         E ETVYIP+  + RG +C+S+QVG
Sbjct: 232 ERYVVRRPGVTKELISADTTRKWLLKFD-----DGHEAETVYIPDADEERGAVCISTQVG 286

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTC FC+TGTQ LVRNL+A EI+ Q ++AR   G++P  +D         GR++SNIV
Sbjct: 287 CTLTCRFCHTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDD--------GGRQLSNIV 338

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NF+NV  +L IA D  G+  SKRRITLSTSG VP +   GE +GV LA+SL
Sbjct: 339 VMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKECGERLGVNLAVSL 398

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV++++R+ ++PIN+KYPL+ L+ ACR YPG SNARRITFEY+MLKGINDS  DA  L+
Sbjct: 399 HAVTDEIRDRIMPINKKYPLKELMQACREYPGASNARRITFEYIMLKGINDSAADARALL 458

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K++KG+PAK NLIPFNPWPG E+   D K    FS+ ++ +GYS+PIR PRG DILAACG
Sbjct: 459 KLVKGLPAKFNLIPFNPWPGSEFDTPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACG 518

Query: 364 QLKSLSKR 371
           QL+S S+R
Sbjct: 519 QLRSESQR 526


>gi|205829855|sp|Q2W897|RLMN_MAGMM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 456

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/368 (52%), Positives = 256/368 (69%), Gaps = 19/368 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +LIG+ R++L   +  IG        R  Q+W W+Y RG  DF  M+ IS+ +   L 
Sbjct: 86  KTNLIGLSRDQLIAEMASIG----EKPFRAKQLWHWMYNRGETDFAKMTSISKSMHGALA 141

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123
           + + +  P +  E IS D TRKWLL+F         E ETVYIP+  + RG +C+S+QVG
Sbjct: 142 ERYVVRRPGVTKELISADTTRKWLLKFD-----DGHEAETVYIPDADEERGAVCISTQVG 196

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTC FC+TGTQ LVRNL+A EI+ Q ++AR   G++P  +D         GR++SNIV
Sbjct: 197 CTLTCRFCHTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDD--------GGRQLSNIV 248

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NF+NV  +L IA D  G+  SKRRITLSTSG VP +   GE +GV LA+SL
Sbjct: 249 VMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKECGERLGVNLAVSL 308

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV++++R+ ++PIN+KYPL+ L+ ACR YPG SNARRITFEY+MLKGINDS  DA  L+
Sbjct: 309 HAVTDEIRDRIMPINKKYPLKELMQACREYPGASNARRITFEYIMLKGINDSAADARALL 368

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K++KG+PAK NLIPFNPWPG E+   D K    FS+ ++ +GYS+PIR PRG DILAACG
Sbjct: 369 KLVKGLPAKFNLIPFNPWPGSEFDTPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACG 428

Query: 364 QLKSLSKR 371
           QL+S S+R
Sbjct: 429 QLRSESQR 436


>gi|46201028|ref|ZP_00207935.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum
           magnetotacticum MS-1]
          Length = 375

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/368 (52%), Positives = 257/368 (69%), Gaps = 19/368 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +LIG+ R++L   +  IG        R  Q+W W+Y RG  DF  M+ IS+ +   L 
Sbjct: 5   KINLIGLSRDQLIAEMAAIG----EKPFRAKQLWHWMYNRGETDFAKMTSISKSMHGALA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123
           + + +  P++  E IS D TRKWLL+F         E ETVYIP+  + RG +C+S+QVG
Sbjct: 61  ERYVVRRPQMTKELISADTTRKWLLKFD-----DGHEAETVYIPDADEDRGAVCISTQVG 115

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTC FC+TGTQ LVRNLTA EI+ Q ++AR   G++P  +D         GR++SNIV
Sbjct: 116 CTLTCRFCHTGTQLLVRNLTAAEIVGQFMVARDSYGEWPTPDD--------GGRQLSNIV 167

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NF+NV  +L IA D  G+  SKRRITLSTSG VP +   GE +GV LA+SL
Sbjct: 168 VMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKICGERLGVNLAVSL 227

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV++++R+ ++PIN+KYPL+ L+ ACR YPG SNARRITFEY+MLKG+NDS  DA  L+
Sbjct: 228 HAVTDEIRDRIMPINKKYPLKELMQACRDYPGASNARRITFEYIMLKGVNDSAADARALL 287

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K++KG+PAK NLIPFNPWPG E+   D K    FS+ ++ +GYS+PIR PRG DILAACG
Sbjct: 288 KLIKGLPAKFNLIPFNPWPGSEFETPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACG 347

Query: 364 QLKSLSKR 371
           QL+S S+R
Sbjct: 348 QLRSESQR 355


>gi|83594658|ref|YP_428410.1| hypothetical protein Rru_A3329 [Rhodospirillum rubrum ATCC 11170]
 gi|123753053|sp|Q2RP22|RLMN_RHORT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|83577572|gb|ABC24123.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 428

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/364 (53%), Positives = 248/364 (68%), Gaps = 17/364 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ REE+   L  +G        R  Q+W W+Y RG  DF  M+ +   +R  L + 
Sbjct: 49  NLVGLSREEIAALLRDMG----EKPFRAKQLWHWVYHRGETDFSAMTTLGTPLRAKLAET 104

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             +  P +V E+ S DGTRKWLLRFP        E ETVYIPE  RG LCVSSQVGC+LT
Sbjct: 105 CVVARPHVVREQRSEDGTRKWLLRFP-----DGNEAETVYIPEDDRGALCVSSQVGCTLT 159

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC+TGTQ LVRNLTA EI+ Q + AR   G++P   D          R++SNIV+MGM
Sbjct: 160 CRFCHTGTQLLVRNLTAHEIVGQFMAARDAYGEWPSPTD--------ESRQLSNIVLMGM 211

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N+DNV K++ I  D+ G++ S+RRITLSTSG VP I R G E+GV LA+SLHA  
Sbjct: 212 GEPLYNYDNVAKAIGILLDNEGIAVSRRRITLSTSGVVPMIRRCGAELGVNLAVSLHAAR 271

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R+ ++PINRKYPL  L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  LIK+++
Sbjct: 272 DEIRDEIMPINRKYPLAELMAACREYPGASNARRITFEYVMLKGVNDSEADARALIKLVE 331

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G+P K NLIPFNPWPG  + C   + I  F+  +  +GY++PIR PRG DILAACGQL+S
Sbjct: 332 GVPCKFNLIPFNPWPGSGFECPPIRHIERFANILFEAGYTAPIRMPRGRDILAACGQLRS 391

Query: 368 LSKR 371
            S R
Sbjct: 392 DSLR 395


>gi|304320170|ref|YP_003853813.1| hypothetical protein PB2503_02977 [Parvularcula bermudensis
           HTCC2503]
 gi|303299073|gb|ADM08672.1| hypothetical protein PB2503_02977 [Parvularcula bermudensis
           HTCC2503]
          Length = 382

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/367 (51%), Positives = 254/367 (69%), Gaps = 16/367 (4%)

Query: 5   KKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++  L G+ R  L+      +G+  +  +MR SQ+W+WIY  G+R+F  M++I + +R  
Sbjct: 15  QRRRLFGLSRAALQSLFAADLGLAPKAAKMRASQVWQWIYSHGVREFDQMTNIGKALRAQ 74

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQV 122
           ++  + +  PE+ + ++S DGTRK+L+RF        +E E V+IP   R G LCVSSQV
Sbjct: 75  MDALYDLSRPEVAERQVSQDGTRKYLIRF-----APGIEAEAVFIPGVGRAGALCVSSQV 129

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C+FC+TGTQ LVRNLTAEEI+ Q+++ +  LG++P   D          R++SNI
Sbjct: 130 GCTLNCTFCHTGTQALVRNLTAEEIIAQIIVCKDDLGEWPSSRD---------DRQLSNI 180

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N D V +++ I +D  G+S S+RRIT+STSG V  +  +GE    MLAIS
Sbjct: 181 VFMGMGEPLYNLDAVAQAIDIIADGEGISISRRRITVSTSGVVSQMRALGERTEAMLAIS 240

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  + LRN LVPIN+K+PL+ L+ ACR YPG SNA+RITFEYVMLKGINDS  +A  L
Sbjct: 241 LHATHDALRNELVPINKKWPLDALLAACRDYPGTSNAKRITFEYVMLKGINDSDAEAREL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +++L+GIPAKINLIPFNPWP   Y CS    I  F++ + ++GY+SPIRTPRG DI AAC
Sbjct: 301 VRLLRGIPAKINLIPFNPWPDSPYECSSWDRIERFADIVNQAGYASPIRTPRGRDISAAC 360

Query: 363 GQLKSLS 369
           GQLKS S
Sbjct: 361 GQLKSES 367


>gi|149184387|ref|ZP_01862705.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. SD-21]
 gi|148831707|gb|EDL50140.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. SD-21]
          Length = 421

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/386 (51%), Positives = 260/386 (67%), Gaps = 22/386 (5%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            LIG+ +E + E     G+  +  ++R  Q++ W+Y RG+ DF+ M+DI++ +R  L + 
Sbjct: 31  DLIGLPKERIRELFETAGLQPKQAKLRAKQVFHWLYHRGVTDFEAMTDIAKTMRPWLAER 90

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PE+V+ + S DGTRKWLL+          E E V+IP+  RGTLCVSSQVGC+L 
Sbjct: 91  FVIGRPEVVEAQHSTDGTRKWLLK-----TADGHEFEMVFIPDADRGTLCVSSQVGCTLN 145

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-------------GCEDIEGMVIPS 174
           C FC+TGT KLVRNLT  EI+ QV+LAR  LG++P               ED EG    S
Sbjct: 146 CRFCHTGTMKLVRNLTPGEIVGQVMLARDALGEWPKGNMNFDYGADLDDAED-EGHYT-S 203

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
            GR ++NIVMMGMGEPL NFDNVK +L +  D  GL+ SKRRITLSTSG VP + R GEE
Sbjct: 204 DGRLLTNIVMMGMGEPLYNFDNVKGALKLVMDGDGLALSKRRITLSTSGVVPAMERCGEE 263

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           IGV LA+SLHAV+ ++R+ +VP+N+KY +E L++AC  YPG SNARRITFEYVMLK  ND
Sbjct: 264 IGVNLAVSLHAVTKEIRDEIVPLNKKYGIEELLEACAAYPGASNARRITFEYVMLKDKND 323

Query: 295 SPRDALNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           +   A  L+++LK   +PAK+NLIPFNPWPG  Y  S  + +  FS+ +   G S+P+RT
Sbjct: 324 TDEHARELVRLLKHYKLPAKVNLIPFNPWPGAAYDTSTPERVKRFSDIVFEGGISAPVRT 383

Query: 353 PRGLDILAACGQLKSLSKRIPKVPRQ 378
           PRG DI AACGQLK+ +++  +  R 
Sbjct: 384 PRGRDIDAACGQLKTAAEKKSRAQRD 409


>gi|296282660|ref|ZP_06860658.1| Fe-S-cluster redox protein [Citromicrobium bathyomarinum JL354]
          Length = 417

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/379 (50%), Positives = 260/379 (68%), Gaps = 13/379 (3%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            LIG+ +  + E     G+  +  ++R+ Q++ W+Y RG+ +F+ M+DI++ +R  L + 
Sbjct: 31  DLIGLPKARIRELFEAAGLDAKAAKLRSKQVFHWLYHRGVTEFEAMTDIAKTMRPWLTER 90

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PE+V+   S DGTRKW+LR          + E V+IP+  RGTLC+SSQVGC+L 
Sbjct: 91  FVIGRPEVVEAHHSTDGTRKWVLR-----TADGNDFEMVFIPDADRGTLCISSQVGCTLN 145

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-----GCEDIEGMV-IPSVGRKISN 181
           C FC+TGT +LVRNLT  EI+ QV+LAR  LG++P     G +++E      S GR ++N
Sbjct: 146 CRFCHTGTMRLVRNLTPGEIVGQVMLARDSLGEWPKGSMAGLDEVEDSAEYTSDGRLLTN 205

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV+MGMGEPL NFDNV+ ++ +  D  GL+ SKRRITLSTSG VP + R GEEIGV LA+
Sbjct: 206 IVLMGMGEPLYNFDNVRDAMKLVMDGDGLALSKRRITLSTSGVVPMMERCGEEIGVNLAV 265

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV  D+R+ +VP+N+KY +E L+ AC  YPG SNARRITFEY+MLK  NDS  DA  
Sbjct: 266 SLHAVRKDIRDEIVPLNKKYGIEELLQACADYPGASNARRITFEYIMLKDKNDSDEDARE 325

Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L+++LK   +PAK+NLIPFNPWPG +Y  S  + I  FS+ +   G S+P+RTPRG DI 
Sbjct: 326 LVRLLKQYDLPAKVNLIPFNPWPGSDYETSLPERIRAFSDIVFEGGISAPVRTPRGRDIG 385

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQLK+ +++  +  R 
Sbjct: 386 AACGQLKTAAEKKSRAQRD 404


>gi|258542583|ref|YP_003188016.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633661|dbj|BAH99636.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636720|dbj|BAI02689.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639773|dbj|BAI05735.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642829|dbj|BAI08784.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645884|dbj|BAI11832.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648937|dbj|BAI14878.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651924|dbj|BAI17858.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654981|dbj|BAI20908.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 408

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/368 (51%), Positives = 255/368 (69%), Gaps = 18/368 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ R+EL + L +IG        RT Q+W WIY +G+ DF  MS I++ ++  L 
Sbjct: 47  RRDLVGLSRDELTDILTEIG----EKPFRTKQLWHWIYHQGVTDFSRMSTIAKPLQQKLA 102

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123
           + F I  PE    + S D TRK+L RF         E ETVYIP++   RG +C+SSQVG
Sbjct: 103 ERFIIGRPEAATVQTSSDETRKFLFRF-----RDGQEAETVYIPDRREDRGAVCISSQVG 157

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C+FC+TGTQKLVRNL A EI+ Q + AR   G++P  +           R +S IV
Sbjct: 158 CTLSCTFCHTGTQKLVRNLGAAEIVSQFMAARDSYGEWPSPKG-------ETPRLLSTIV 210

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++NV K++ I  D  G+  S+RRITLSTSG VP + R G+E+G+ LA+SL
Sbjct: 211 LMGMGEPLYNYENVAKAMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSL 270

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV NDLR+ +VP+NRKYP+E ++ ACR YP  SNARRITFEY+ML+GINDS  DA  L+
Sbjct: 271 HAVRNDLRDEIVPLNRKYPIEEVLAACRRYPAASNARRITFEYIMLRGINDSEADARELV 330

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG +Y  S ++    F+E +  +G++SPIRTPRG DILAACG
Sbjct: 331 RLISGIPAKVNLIPFNPWPGSDYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACG 390

Query: 364 QLKSLSKR 371
           QLK+ S+R
Sbjct: 391 QLKTASER 398


>gi|329115338|ref|ZP_08244092.1| Ribosomal RNA large subunit methyltransferase N [Acetobacter
           pomorum DM001]
 gi|326695317|gb|EGE47004.1| Ribosomal RNA large subunit methyltransferase N [Acetobacter
           pomorum DM001]
          Length = 408

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/368 (51%), Positives = 255/368 (69%), Gaps = 18/368 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ R+EL + L++IG        RT Q+W WIY +G+ DF  MS I++ ++  L 
Sbjct: 47  RRDLVGLSRDELTDILIEIG----EKPFRTKQLWHWIYHQGVTDFSRMSTIAKPLQQKLA 102

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123
           + F I  PE    + S D TRK+L RF         E ETVYIP++   RG +C+SSQVG
Sbjct: 103 ERFIIGRPEAATVQTSSDSTRKFLFRF-----RDGQEAETVYIPDRREDRGAVCISSQVG 157

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C+FC+TGTQKLVRNL A EI+ Q + AR   G++P  +           R +S IV
Sbjct: 158 CTLSCTFCHTGTQKLVRNLGAAEIVSQFMAARDSYGEWPSPKG-------ETPRLLSTIV 210

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++NV K++ I  D  G+  S+RRITLSTSG VP + R G+E+G+ LA+SL
Sbjct: 211 LMGMGEPLYNYENVAKAMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSL 270

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV NDLR+ +VP+NRKYP+E ++ ACR YP  SNARRITFEY+ML+G+NDS  DA  L+
Sbjct: 271 HAVRNDLRDEIVPLNRKYPIEEVLAACRRYPAASNARRITFEYIMLRGVNDSEADARELV 330

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG  Y  S ++    F+E +  +G++SPIRTPRG DILAACG
Sbjct: 331 RLISGIPAKVNLIPFNPWPGSAYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACG 390

Query: 364 QLKSLSKR 371
           QLK+ S+R
Sbjct: 391 QLKTASER 398


>gi|254464850|ref|ZP_05078261.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium Y4I]
 gi|206685758|gb|EDZ46240.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium Y4I]
          Length = 413

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/362 (53%), Positives = 253/362 (69%), Gaps = 16/362 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R+ + E L++ G P++  +MR  QIW+WIY  G RDF  M+++++  R  L 
Sbjct: 23  KINLVGLTRDRMREVLMEHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRAQLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 83  ETFEIRIPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183
           LTCSFC+TGTQKLVRNLT  EI+ QV++AR  L ++P  G    E        R +SNIV
Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIVGQVMMARDDLEEWPVPGAPKEET-------RLLSNIV 190

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NFDNV+ ++ IA D  G+S S+RRITLSTSG VP IAR  +EIG +LAIS 
Sbjct: 191 LMGMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCLLAISF 250

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N+ R++LVPIN+++ ++ L+ A   YP  SN+ RITFEYVML G+ND+  DA  LI
Sbjct: 251 HATTNETRDVLVPINKRWNIDELLQALADYPKASNSERITFEYVMLDGVNDTDEDAHRLI 310

Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
             +K   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR  RG DI+AA
Sbjct: 311 DHIKRYNIPAKINLIPFNEWPGSPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAA 370

Query: 362 CG 363
           CG
Sbjct: 371 CG 372


>gi|326405176|ref|YP_004285258.1| ribosomal RNA large subunit methyltransferase N [Acidiphilium
           multivorum AIU301]
 gi|325052038|dbj|BAJ82376.1| ribosomal RNA large subunit methyltransferase N [Acidiphilium
           multivorum AIU301]
          Length = 394

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/364 (51%), Positives = 249/364 (68%), Gaps = 18/364 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ REEL  A+ +IG        R  Q+W WIY +G+ DF  M++I++ +R  L 
Sbjct: 41  RRDLVGLSREELAAAMAEIG----EQPFRAKQLWHWIYHQGVTDFAAMANIAKPLRAKLA 96

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123
           + F+I  PE+  + +S D TRK L RF          +ETVYIP+  + RG +C+SSQVG
Sbjct: 97  ERFAIGRPEVAADHLSADETRKMLFRFRDH-----EAVETVYIPDVTEDRGAVCLSSQVG 151

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C FC+TGTQ+L RNL+A EI+ Q +  R   G++P  +           R +S IV
Sbjct: 152 CTLSCRFCHTGTQRLTRNLSAAEIVGQFMAMRDAYGEWPSPKG-------ETPRLLSTIV 204

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++NV K++ I  D  G+  S+RRITLSTSG VP + R G E+GV LA+SL
Sbjct: 205 LMGMGEPLYNYENVAKAMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSL 264

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV++D+R+++VP+NRKY +  LI ACR YPG SNARRITFEYVMLKGINDS  DA  L+
Sbjct: 265 HAVTDDVRDVIVPLNRKYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLV 324

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG  Y  S    I  F+  +  +GY++P+RTPRG DILAACG
Sbjct: 325 ELIDGIPAKVNLIPFNPWPGSTYETSSGNAIRRFANIVMDAGYAAPVRTPRGQDILAACG 384

Query: 364 QLKS 367
           QLKS
Sbjct: 385 QLKS 388


>gi|148261683|ref|YP_001235810.1| radical SAM protein [Acidiphilium cryptum JF-5]
 gi|205829703|sp|A5G209|RLMN_ACICJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146403364|gb|ABQ31891.1| 23S rRNA m(2)A-2503 methyltransferase [Acidiphilium cryptum JF-5]
          Length = 390

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/364 (51%), Positives = 249/364 (68%), Gaps = 18/364 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ REEL  A+ +IG        R  Q+W WIY +G+ DF  M++I++ +R  L 
Sbjct: 37  RRDLVGLSREELAAAMAEIG----EQPFRAKQLWHWIYHQGVTDFAAMANIAKPLRAKLA 92

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123
           + F+I  PE+  + +S D TRK L RF          +ETVYIP+  + RG +C+SSQVG
Sbjct: 93  ERFAIGRPEVAADHLSADETRKMLFRFRDH-----EAVETVYIPDVTEDRGAVCLSSQVG 147

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C FC+TGTQ+L RNL+A EI+ Q +  R   G++P  +           R +S IV
Sbjct: 148 CTLSCRFCHTGTQRLTRNLSAAEIVGQFMAMRDAYGEWPSPKG-------ETPRLLSTIV 200

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++NV K++ I  D  G+  S+RRITLSTSG VP + R G E+GV LA+SL
Sbjct: 201 LMGMGEPLYNYENVAKAMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSL 260

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV++D+R+++VP+NRKY +  LI ACR YPG SNARRITFEYVMLKGINDS  DA  L+
Sbjct: 261 HAVTDDVRDVIVPLNRKYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLV 320

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG  Y  S    I  F+  +  +GY++P+RTPRG DILAACG
Sbjct: 321 ELIDGIPAKVNLIPFNPWPGSTYETSSGNAIRRFANIVMDAGYAAPVRTPRGQDILAACG 380

Query: 364 QLKS 367
           QLKS
Sbjct: 381 QLKS 384


>gi|58038729|ref|YP_190693.1| putative Fe-S-cluster redox protein [Gluconobacter oxydans 621H]
 gi|81352583|sp|Q5FUA9|RLMN_GLUOX RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|58001143|gb|AAW60037.1| Putative Fe-S-cluster redox enzyme [Gluconobacter oxydans 621H]
          Length = 407

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/370 (50%), Positives = 255/370 (68%), Gaps = 22/370 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ REEL   + +IG        R  Q+W WIY +G  DF  M+ I++ ++  L 
Sbjct: 47  RRDLVGLSREELAALMTEIG----EKPFRAKQLWHWIYHQGATDFSAMTTIAKPMQAKLA 102

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123
           +HF +  P    E+ S D TRK+L RF         E ETVYIP++   RG +C+SSQVG
Sbjct: 103 EHFVVSRPTTATEQTSVDETRKFLFRF-----RDGQEAETVYIPDRREDRGAVCISSQVG 157

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISN 181
           C+L+C+FC+TGTQKLVRNL   EI+ Q + AR   G++P          PS    R +S 
Sbjct: 158 CTLSCTFCHTGTQKLVRNLGPAEIVGQFMAARDSYGEWPS---------PSADMPRYLST 208

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV+MGMGEPL N++NV K++ I  D  G++ S+RRITLSTSG VP + R G+E+G+ LAI
Sbjct: 209 IVLMGMGEPLYNYENVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDELGINLAI 268

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV+N+LR+ +VP+NRKYP+E LI ACR YP  SN+RRITFEY+ML+G+NDS  DA  
Sbjct: 269 SLHAVTNELRDQIVPLNRKYPIEELIAACRRYPAASNSRRITFEYIMLRGVNDSEADARE 328

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++++ +PAK+NLIPFNPWPG ++  S ++ +  F+  +  +G++SPIRTPRG DILAA
Sbjct: 329 LVRLIRDLPAKVNLIPFNPWPGSDFQPSTRQQLTKFANIVMDAGFASPIRTPRGQDILAA 388

Query: 362 CGQLKSLSKR 371
           CGQLK+ S+R
Sbjct: 389 CGQLKTESER 398


>gi|114327110|ref|YP_744267.1| radical SAM protein [Granulibacter bethesdensis CGDNIH1]
 gi|122327908|sp|Q0BV08|RLMN_GRABC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|114315284|gb|ABI61344.1| radical SAM family enzyme [Granulibacter bethesdensis CGDNIH1]
          Length = 397

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/368 (51%), Positives = 251/368 (68%), Gaps = 18/368 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           ++ L+G+ RE+L EAL +IG P      R  Q+W WIY RG  DF+ MS I++  +  L 
Sbjct: 41  RKDLVGLSREQLTEALAEIGFPA----FRAKQLWHWIYHRGETDFRVMSSIAKPQQETLA 96

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123
           + F I  P + +   S D TRKWL RF         E ETVYIP+  + RG +C+SSQVG
Sbjct: 97  ERFVISRPAVTECLTSVDETRKWLFRF-----RDGQEAETVYIPDPVEDRGAVCISSQVG 151

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C FC+TGTQ LVRNL   EI+ Q + AR   G++P  +           R +S IV
Sbjct: 152 CTLSCRFCHTGTQPLVRNLGPAEIVGQFMAARDAYGEWPSPKG-------ETPRLLSTIV 204

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++NVK+++ I  D  G++ S+RRITLSTSG VP + R G E+ V LAISL
Sbjct: 205 LMGMGEPLYNYENVKQAMRIVMDGDGIALSRRRITLSTSGVVPMMDRCGTELAVNLAISL 264

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV+++LR+ LVP+NRKYP+  LI ACR YP  SNARRITFEY+ML GINDS  +A  L+
Sbjct: 265 HAVTDELRDELVPLNRKYPIRELIAACRRYPAASNARRITFEYIMLDGINDSEAEARELV 324

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG +Y  S  K +  FS  +  +G++SPIRTPRG DILAACG
Sbjct: 325 RLIAGIPAKVNLIPFNPWPGSQYTPSRPKALERFSRIVMEAGFASPIRTPRGRDILAACG 384

Query: 364 QLKSLSKR 371
           QL++ S++
Sbjct: 385 QLRTESRK 392


>gi|162147642|ref|YP_001602103.1| hypothetical protein GDI_1858 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209542271|ref|YP_002274500.1| radical SAM enzyme, Cfr family [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786219|emb|CAP55801.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209529948|gb|ACI49885.1| radical SAM enzyme, Cfr family [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 404

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/368 (50%), Positives = 255/368 (69%), Gaps = 18/368 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ REEL +AL++IG        RT Q+W WIY +G+ DF  MS I++ ++  L 
Sbjct: 46  RRELVGLSREELTQALVEIG----EKPFRTKQLWHWIYHQGVTDFARMSSIAKPLQAKLA 101

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123
           + F +  P+    + S D TRK+L RF         E ETVYIP++   RG +C+SSQVG
Sbjct: 102 ERFVVGRPDAAMVQTSTDETRKFLFRF-----RDGQEAETVYIPDRREDRGAVCISSQVG 156

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C+FC+TGTQKLVRNL A EI+ Q + AR   G++P  +           R +S IV
Sbjct: 157 CTLSCTFCHTGTQKLVRNLGAAEIVGQFMAARDSYGEWPSPKG-------DTPRLLSTIV 209

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++N+ K++ I  D  G+  S+RRITLSTSG +P + + G E+G+ LAISL
Sbjct: 210 LMGMGEPLYNYENIAKAMKIIMDGEGIGLSRRRITLSTSGVIPMMDQCGSELGINLAISL 269

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV NDLR+ +VP+NRKYP+E LI ACR YP  SNARRITFEY+ML+G+NDS  +A  L+
Sbjct: 270 HAVRNDLRDEIVPLNRKYPIEDLIAACRRYPTASNARRITFEYIMLRGVNDSEAEARELV 329

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG  Y  S ++ +  F++ +  +G++SPIR PRG DILAACG
Sbjct: 330 RLIAGIPAKVNLIPFNPWPGSAYKPSTREQLAKFAQIVMDAGFASPIRMPRGRDILAACG 389

Query: 364 QLKSLSKR 371
           QL++ S+R
Sbjct: 390 QLRTESER 397


>gi|330994687|ref|ZP_08318610.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter
           sp. SXCC-1]
 gi|329758328|gb|EGG74849.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter
           sp. SXCC-1]
          Length = 412

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/376 (49%), Positives = 256/376 (68%), Gaps = 18/376 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ REEL + +++IG        RT Q+W WIY +G  DF  MS I++ ++  L 
Sbjct: 46  RRDLVGLSREELTDIMVEIG----EKPFRTKQLWHWIYHQGATDFSRMSSIARPLQEKLA 101

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123
           + F +  P +V E+ S D TRK+L RF         E ETVYIP++   RG +C+SSQVG
Sbjct: 102 ERFVVGRPGVVTEQTSQDSTRKFLFRF-----RDGQEAETVYIPDRQEDRGAVCISSQVG 156

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C+FC+TGTQ LVRNL A EI+ Q + AR   G++P  +           R +S IV
Sbjct: 157 CTLSCTFCHTGTQALVRNLGAAEIVGQFMAARDSYGEWPSPKG-------DTPRLLSTIV 209

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N+DNV K++ I  D  G+  S+RRITLSTSG VP + + G E+G+ LA+SL
Sbjct: 210 LMGMGEPLYNYDNVAKAMRIIMDGEGIGLSRRRITLSTSGVVPMMDQCGAELGINLAVSL 269

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV +DLR+ +VP+NRKYP+  +I ACR YP  SNARRITFEY+ML+GINDS  DA  L+
Sbjct: 270 HAVRDDLRDEIVPLNRKYPIRDVIAACRRYPAASNARRITFEYIMLRGINDSEADARELV 329

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG  Y  S ++ +  F+  +  +G++SPIR PRG DILAACG
Sbjct: 330 RLISGIPAKVNLIPFNPWPGSSYRPSTREQLERFANIVMDAGFASPIRMPRGRDILAACG 389

Query: 364 QLKSLSKRIPKVPRQE 379
           QL++ S+R+ +  R +
Sbjct: 390 QLRTESQRLRRASRPD 405


>gi|296116218|ref|ZP_06834836.1| radical SAM enzyme, Cfr family protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977324|gb|EFG84084.1| radical SAM enzyme, Cfr family protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 410

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/373 (49%), Positives = 252/373 (67%), Gaps = 18/373 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ REEL E LL+IG        RT Q+W WIY +G  DF  MS I++ ++  L 
Sbjct: 47  RRELVGLSREELTEILLEIG----EKPFRTKQLWHWIYHQGATDFSCMSSIAKPLQEKLA 102

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123
           + F I  P+    + S D TRK+L RF         E ETVYIP++   RG +C+SSQVG
Sbjct: 103 ERFVISRPQAATVQTSSDETRKFLFRF-----RDGQEAETVYIPDRREDRGAVCISSQVG 157

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C+FC+TGTQ LVRNL A EI+ Q + AR   G++P              R +S IV
Sbjct: 158 CTLSCTFCHTGTQGLVRNLGAAEIVGQFMAARDSYGEWPSPRG-------ETPRLLSTIV 210

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++N+ K++ I  D  G+  S+RRITLSTSG +P + + G+E+G+ LAISL
Sbjct: 211 LMGMGEPLYNYENIAKAMKIIMDGEGIGLSRRRITLSTSGVIPMMDQCGDELGINLAISL 270

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV +DLR+ LVP+NRKYP+  LI ACR YP  SNARRITFEY+ML+G+NDS  DA  L+
Sbjct: 271 HAVRDDLRDELVPLNRKYPIADLIAACRRYPAASNARRITFEYIMLRGVNDSEADARELV 330

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG  +  S ++ +  F+  +  +G++SPIR PRG DILAACG
Sbjct: 331 RLIAGIPAKVNLIPFNPWPGSRFQPSTREQLDRFANIVMDAGFASPIRMPRGRDILAACG 390

Query: 364 QLKSLSKRIPKVP 376
           QL++ S+R  + P
Sbjct: 391 QLRTESQRARRQP 403


>gi|294661183|ref|YP_003573058.1| hypothetical protein Aasi_1616 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336333|gb|ACP20930.1| hypothetical protein Aasi_1616 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 339

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/337 (53%), Positives = 234/337 (69%), Gaps = 14/337 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+W+W+Y  G + F  M+++    R  L  H+S+   +     IS D T KWLL F
Sbjct: 9   FRADQVWRWVYQLGAQSFSTMNNVPLLFRETLGLHYSLERTQEHQVLISKDKTIKWLLAF 68

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                    E+ETV+IPE++R TLC+SSQVGC+L C FC+TGTQ LVRNL A EI+ Q+L
Sbjct: 69  -----SDANEVETVWIPEQTRSTLCISSQVGCTLNCKFCHTGTQPLVRNLRAGEIVAQLL 123

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A+ +L D+P           +  RKI+NIVMMGMGEPL N++ V K++ I     GL  
Sbjct: 124 HAKDVLQDWPS---------HAPTRKINNIVMMGMGEPLLNYEQVAKAIQIMMHPQGLDI 174

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+++ITLSTSG VP I R  EE+GV LAISLHAV+++LRN LVPIN+KYP+  L+ ACR 
Sbjct: 175 SRKKITLSTSGIVPQIKRCAEELGVNLAISLHAVTDELRNHLVPINKKYPINELLQACRD 234

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y  ++  R+ITFEYVMLKG+NDSP DA  L+ ++KGIPAKINLIPFNPWPG E  CS + 
Sbjct: 235 YASITGCRKITFEYVMLKGVNDSPADAKKLVDLIKGIPAKINLIPFNPWPGTELECSTES 294

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           +I  F+  I+++GY +P+RTPRG DI+AACGQLKS S
Sbjct: 295 NIKQFAAIIEKAGYIAPVRTPRGEDIMAACGQLKSAS 331


>gi|328866638|gb|EGG15021.1| putative ribosomal RNA large subunit methyltransferase N
           [Dictyostelium fasciculatum]
          Length = 432

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 176/381 (46%), Positives = 255/381 (66%), Gaps = 24/381 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++LIG+ +EE+E     +G+     + R  Q+WKWIY +G ++   + ++S++ R +L+
Sbjct: 57  KKNLIGLSKEEIETQFETLGLE----KYRAKQVWKWIYNKGTKNIDHIDNLSKKHRDILS 112

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + ++I +  +  + +S DGTRK L+ F         E+ETV+IPE++RGTLC+SSQVGC+
Sbjct: 113 EVYNIDHGVVNKDSLSIDGTRKLLVEFKGD------EVETVFIPERNRGTLCISSQVGCT 166

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI-SNIVM 184
             C+FC+TGTQKLVRNLTA EI+ QV  ARSL+ DF           P+  +++ +N+V+
Sbjct: 167 FQCTFCHTGTQKLVRNLTAGEIVSQVFTARSLMHDFG----------PTTNKRLLTNVVL 216

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MG GEPL N+ NV K+L I +D  G+S SK +ITLSTSG VP I R+G++  G+ LAISL
Sbjct: 217 MGQGEPLYNYRNVSKALKILTDGEGISISKSKITLSTSGVVPLIERLGQDFPGIGLAISL 276

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N  R+ +VPIN+++P+E L+ AC ++       RIT EYVMLKGIND+ +DA NLI
Sbjct: 277 HASNNKTRSEIVPINQQWPIEELVQACINFTQKYTKDRITIEYVMLKGINDAKQDAYNLI 336

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++    P+ INLIPFNPWPG  Y C+    I +F+  ++R G    +R PRG DILAACG
Sbjct: 337 QLASQFPSLINLIPFNPWPGTIYECTPIDQIESFARILERGGLKVTVRQPRGTDILAACG 396

Query: 364 QLKSLSKRIPK--VPRQEMQI 382
           QL S S++     +P QE ++
Sbjct: 397 QLVSSSQKKKGIIIPEQEGEV 417


>gi|66806177|ref|XP_636811.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4]
 gi|60465214|gb|EAL63309.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4]
          Length = 407

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 169/381 (44%), Positives = 242/381 (63%), Gaps = 21/381 (5%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           + +KK +LIG+ ++ELE+ +LK+G P    +  + QIW ++Y +GI D      +S+E R
Sbjct: 44  DIIKKINLIGIQKDELEDKVLKLGYP----KYLSEQIWAFMYNKGIVDINSFERVSKEKR 99

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             +   + +   EI   ++S DGTRK L+ F         E+E+V+IPE  RGTLCVSSQ
Sbjct: 100 EEIKSKYEVNIGEITKHQLSVDGTRKLLISFDG------AEVESVFIPEGKRGTLCVSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+  C+FC+TGTQK +RNLTA EI+ QV+  R +L DF            S+ R ++N
Sbjct: 154 VGCTFACTFCHTGTQKFIRNLTASEIVSQVIATRHVLNDFTDS---------SIKRTLTN 204

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
           IV MG GEP  N+ NV K++ I +D  GL+  K +IT+STSG VP I R+G +  G+ LA
Sbjct: 205 IVFMGQGEPFYNYRNVSKAIKIITDPNGLAIGKSKITVSTSGVVPLIDRLGSDFPGIGLA 264

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLH+ ++  R+ +VP NR++P+  L++AC  +   +   RIT EYVMLKG+NDS +DA 
Sbjct: 265 ISLHSANDKTRSEIVPANRQWPISELVEACIKFSK-NCKERITIEYVMLKGVNDSEQDAY 323

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           +L+K+ K  P+ +NLIPFNPWPG +Y  S ++ I  FS+ +   G    IR PRG DILA
Sbjct: 324 DLVKLSKSFPSFVNLIPFNPWPGSQYKSSSKETISQFSKILDDKGIKVTIRQPRGRDILA 383

Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381
           ACGQL + S +    P Q ++
Sbjct: 384 ACGQLNTESIKEINKPIQPLE 404


>gi|71738083|ref|YP_273575.1| radical SAM protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257487201|ref|ZP_05641242.1| radical SAM protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|298486020|ref|ZP_07004094.1| 23S rRNA m(2)A2503 methyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|123761313|sp|Q48LZ7|RLMN_PSE14 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|71558636|gb|AAZ37847.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298159497|gb|EFI00544.1| 23S rRNA m(2)A2503 methyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320322924|gb|EFW79014.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329953|gb|EFW85941.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330874705|gb|EGH08854.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330985011|gb|EGH83114.1| radical SAM protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009183|gb|EGH89239.1| radical SAM protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 382

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 170/361 (47%), Positives = 225/361 (62%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+D+CR Y   L   R +T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|289626156|ref|ZP_06459110.1| radical SAM protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649062|ref|ZP_06480405.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330869580|gb|EGH04289.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 382

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 170/361 (47%), Positives = 225/361 (62%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+D+CR Y   L   R +T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|237800040|ref|ZP_04588501.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022895|gb|EGI02952.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 382

 Score =  325 bits (833), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 225/361 (62%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++CR Y   L   R +T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|330872882|gb|EGH07031.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965912|gb|EGH66172.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 382

 Score =  325 bits (833), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 225/361 (62%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISTDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++CR Y   L   R +T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|66044493|ref|YP_234334.1| hypothetical protein Psyr_1245 [Pseudomonas syringae pv. syringae
           B728a]
 gi|75503082|sp|Q4ZX26|RLMN_PSEU2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|63255200|gb|AAY36296.1| Conserved hypothetical protein 48 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 382

 Score =  325 bits (832), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 225/361 (62%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++CR Y   L   R +T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|330969073|gb|EGH69139.1| hypothetical protein PSYAR_01077 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 382

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 225/361 (62%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++CR Y   L   R +T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|213971521|ref|ZP_03399632.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1]
 gi|301386126|ref|ZP_07234544.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060174|ref|ZP_07251715.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302135117|ref|ZP_07261107.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213923713|gb|EEB57297.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1]
          Length = 382

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 224/361 (62%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISTDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  +   I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMRLMMDDLGYGISKRRVTLSTSGVVPMIDELSRHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++CR Y   L   R +T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|15599001|ref|NP_252495.1| hypothetical protein PA3806 [Pseudomonas aeruginosa PAO1]
 gi|107103326|ref|ZP_01367244.1| hypothetical protein PaerPA_01004395 [Pseudomonas aeruginosa PACS2]
 gi|116051831|ref|YP_789326.1| hypothetical protein PA14_14830 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296387679|ref|ZP_06877154.1| hypothetical protein PaerPAb_05972 [Pseudomonas aeruginosa PAb1]
 gi|313109224|ref|ZP_07795192.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa 39016]
 gi|3287987|sp|Q51385|RLMN_PSEAE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|122260978|sp|Q02RW0|RLMN_PSEAB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|9949979|gb|AAG07193.1|AE004798_16 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|1162959|gb|AAB40948.1| homologous to HI0365 in Haemophilus influenzae; ORF1 [Pseudomonas
           aeruginosa PAO1]
 gi|115587052|gb|ABJ13067.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310881694|gb|EFQ40288.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa 39016]
          Length = 379

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 223/361 (61%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + +LE+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 8   KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 63

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PEIV + IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 64  ASAEIRGPEIVSQDISADGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 118

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    +LTA E++ QV +A    G  P            + R I+N+VMM
Sbjct: 119 LDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPA----------KIDRAITNVVMM 168

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  +++I  D +G   SKR++TLSTSG VP I ++GE I V LA+SLHA
Sbjct: 169 GMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 228

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL ML+DACR Y   L   R +T EY +LK +ND P  A  +I 
Sbjct: 229 PNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 288

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + + G++  +RT RG DI AACGQ
Sbjct: 289 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQ 348

Query: 365 L 365
           L
Sbjct: 349 L 349


>gi|218889910|ref|YP_002438774.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
 gi|218770133|emb|CAW25895.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
          Length = 379

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 223/361 (61%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + +LE+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 8   KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 63

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PEIV + IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 64  ASAEIRGPEIVSQDISADGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 118

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    +LTA E++ QV +A    G  P            + R I+N+VMM
Sbjct: 119 LDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPA----------KIDRAITNVVMM 168

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  +++I  D +G   SKR++TLSTSG VP I ++GE I V LA+SLHA
Sbjct: 169 GMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 228

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL ML+DACR Y   L   R +T EY +LK +ND P  A  +I 
Sbjct: 229 PNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 288

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + + G++  +RT RG DI AACGQ
Sbjct: 289 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQ 348

Query: 365 L 365
           L
Sbjct: 349 L 349


>gi|152989129|ref|YP_001346692.1| hypothetical protein PSPA7_1308 [Pseudomonas aeruginosa PA7]
 gi|205829634|sp|A6V0V7|RLMN_PSEA7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|150964287|gb|ABR86312.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 378

 Score =  322 bits (826), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 168/361 (46%), Positives = 223/361 (61%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + +LE+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PEIV + IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  AFAEIRGPEIVSQDISADGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    +L+A E++ QV +A    G  P            + R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSDLSAAEVIGQVWIANKSFGTVPA----------KIDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  +++I  D +G   SKR++TLSTSG VP I ++GE I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL ML+DACR Y   L   R +T EY +LK +ND P  A  +I 
Sbjct: 228 PNDELRNRLVPINKKYPLTMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + + G++  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHKGGFNVTVRTTRGDDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|146308518|ref|YP_001188983.1| radical SAM protein [Pseudomonas mendocina ymp]
 gi|205829652|sp|A4XY35|RLMN_PSEMY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145576719|gb|ABP86251.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas mendocina ymp]
          Length = 382

 Score =  322 bits (826), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 167/365 (45%), Positives = 224/365 (61%), Gaps = 20/365 (5%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R
Sbjct: 3   NTTGKINLLGLTQPEMEQFFESIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKALR 58

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L     I  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ
Sbjct: 59  EKLEASAEIRGPEVVSENISADGTRKWVVRVASGSC-----VETVYIPQNGRGTLCVSSQ 113

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC+L CSFC TG Q    +LT+ EI+ QV +A    G  P            + R I+N
Sbjct: 114 AGCALDCSFCSTGKQGFNSDLTSAEIIGQVWIANKSFGTVPA----------KIDRAITN 163

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL NFDNV  ++ I  D +G   SKR++TLSTSG VP I ++ E I V LA+
Sbjct: 164 VVMMGMGEPLLNFDNVVSAMQIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLAL 223

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDAL 300
           SLHA +++LRN LVPIN+KYPL+ML+ AC+ Y   L   R +T EY +LKG+ND P  A 
Sbjct: 224 SLHAPNDELRNQLVPINKKYPLDMLLAACKRYVAKLGEKRVLTIEYTLLKGVNDQPEHAE 283

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            +I +L  +P KINLIPFNP+P   Y       I  F + + ++G++  +RT RG DI A
Sbjct: 284 QMIALLADVPCKINLIPFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGDDIDA 343

Query: 361 ACGQL 365
           ACGQL
Sbjct: 344 ACGQL 348


>gi|83647153|ref|YP_435588.1| Fe-S-cluster redox protein [Hahella chejuensis KCTC 2396]
 gi|123753570|sp|Q2SDW1|RLMN_HAHCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|83635196|gb|ABC31163.1| predicted Fe-S-cluster redox enzyme [Hahella chejuensis KCTC 2396]
          Length = 378

 Score =  322 bits (826), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 169/384 (44%), Positives = 240/384 (62%), Gaps = 25/384 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM R +LE     +G      + R +Q+ KW+Y  G+ DF  M+++S+ +R  L 
Sbjct: 7   KINLLGMNRSDLETFFESLG----EKKFRATQLMKWMYHLGVSDFDLMTNMSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   +  PE++ E IS DGTRKW++R     + G   IETVYIP+  RGTLCVSSQ+GCS
Sbjct: 63  EVAEVSVPEVIYEDISADGTRKWVMR-----LAGGNSIETVYIPDNGRGTLCVSSQIGCS 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL++ EI+ Q+ +A    GD+   ++          R ++NIV M
Sbjct: 118 LDCSFCSTGKQGFNRNLSSAEIIGQLWIAARSFGDYDLSKE----------RYVTNIVFM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV ++  +  D  G   SKRR+T+STSG VP + ++G+   V LAISLHA
Sbjct: 168 GMGEPLLNFDNVVRACDVMMDDFGFGISKRRLTVSTSGLVPALDKLGDVTDVSLAISLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLIK 304
            +N LR++LVP+N+KYP+E L+ AC  Y G LS+ RRIT EY ++ G+NDS   A  L  
Sbjct: 228 PNNSLRDVLVPVNKKYPIEELLAACHRYLGKLSDKRRITVEYTLIAGVNDSETHAHELRD 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ +P KINLIPFNP+P   Y    +   + F + +  +GY + +RT RG DI AACGQ
Sbjct: 288 LLRDLPCKINLIPFNPFPNSGYERPSRNATLRFQKVLSDAGYVATVRTTRGDDIDAACGQ 347

Query: 365 L----KSLSKRIPK-VPRQEMQIT 383
           L    +  ++R  K +P Q + ++
Sbjct: 348 LVGRVEDRTRRSQKYIPLQNINVS 371


>gi|226946070|ref|YP_002801143.1| hypothetical protein Avin_40320 [Azotobacter vinelandii DJ]
 gi|226720997|gb|ACO80168.1| Conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 381

 Score =  322 bits (826), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 169/366 (46%), Positives = 223/366 (60%), Gaps = 20/366 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN   K +L+G+ + +LE     IG      R R  Q+ KWI+  G+ DF  MS+I + +
Sbjct: 1   MNETTKANLLGLTQPQLESFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMSNIGKAL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L     I  PE+V + IS DGTRKW++R  +        +ETVYIP+  RGTLCVSS
Sbjct: 57  REKLKACAEIRGPEVVSQDISGDGTRKWVVRVASGSC-----VETVYIPQAGRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GCSL CSFC TG Q    +LTA EI+ QV +A    G  PG           + R I+
Sbjct: 112 QAGCSLDCSFCSTGKQGFNSDLTAAEIIGQVWIANKSFGTVPG----------KIDRAIT 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL NFDN   ++ I  D +G   SKR++TLSTSG  P I  +G+ I V LA
Sbjct: 162 NVVMMGMGEPLMNFDNAVAAMQIMMDDLGYGISKRKVTLSTSGVAPMIDELGKIIDVSLA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDA 299
           +SLHA +++LRN LVPINRKYPL  ++DACR Y   L   R +T EY +LK +ND P  A
Sbjct: 222 LSLHAPNDELRNRLVPINRKYPLAQVLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHA 281

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             ++++L+ +P KINLIPFNP+P   Y       I  F + + ++G++  +RT RG DI 
Sbjct: 282 AQMVELLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGEDID 341

Query: 360 AACGQL 365
           AACGQL
Sbjct: 342 AACGQL 347


>gi|330957524|gb|EGH57784.1| radical SAM protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 382

 Score =  322 bits (826), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 224/361 (62%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDVMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++CR Y   L   R +T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDQVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|28868638|ref|NP_791257.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|81732046|sp|Q886Z3|RLMN_PSESM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|28851876|gb|AAO54952.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331019383|gb|EGH99439.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 382

 Score =  322 bits (825), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 167/361 (46%), Positives = 225/361 (62%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVP+N+KYPL++L+++CR Y   L   R +T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|289677951|ref|ZP_06498841.1| hypothetical protein PsyrpsF_31988 [Pseudomonas syringae pv.
           syringae FF5]
 gi|302185748|ref|ZP_07262421.1| hypothetical protein Psyrps6_05363 [Pseudomonas syringae pv.
           syringae 642]
 gi|330895885|gb|EGH28170.1| hypothetical protein PSYJA_03834 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 382

 Score =  322 bits (824), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 167/361 (46%), Positives = 225/361 (62%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVP+N+KYPL++L+++CR Y   L   R +T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|254236710|ref|ZP_04930033.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126168641|gb|EAZ54152.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 379

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 168/361 (46%), Positives = 222/361 (61%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + +LE+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 8   KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 63

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PEIV + IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 64  ASAEIRGPEIVSQDISADGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 118

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    +LTA E++ QV +A    G  P            + R I+N+VMM
Sbjct: 119 LDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPA----------KIDRAITNVVMM 168

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GM EPL NFDNV  +++I  D +G   SKR++TLSTSG VP I ++GE I V LA+SLHA
Sbjct: 169 GMSEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 228

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL ML+DACR Y   L   R +T EY +LK +ND P  A  +I 
Sbjct: 229 PNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 288

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + + G++  +RT RG DI AACGQ
Sbjct: 289 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQ 348

Query: 365 L 365
           L
Sbjct: 349 L 349


>gi|307822494|ref|ZP_07652725.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96]
 gi|307736098|gb|EFO06944.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96]
          Length = 370

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 160/333 (48%), Positives = 220/333 (66%), Gaps = 20/333 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +Q+ KWIY  G+ DF  M+++S+ +R  L ++  I  PEIV EK++ DGT KW+++ 
Sbjct: 35  FRATQLLKWIYQEGVEDFDLMTNLSKSLRAYLTENCYIATPEIVLEKVATDGTCKWVMQ- 93

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                G    IETV+IPE+ RGTLCVSSQ+GC+L C+FC T  Q   RNLT  EI+ Q+ 
Sbjct: 94  ----TGCGNRIETVFIPEEGRGTLCVSSQIGCALACTFCSTAQQGFNRNLTTAEIIGQLF 149

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A+  LG                G +I+N+VMMGMGEPL NFDNV  ++++  D      
Sbjct: 150 VAQKRLGP---------------GNRITNVVMMGMGEPLLNFDNVVAAMNLMMDDFTFGL 194

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           SKRR+T+STSG VP + R+ +   V LA+SLHAV+++LR+ LVPIN+KYPL+ L++ACR 
Sbjct: 195 SKRRVTISTSGVVPAMYRLTQVCDVSLAVSLHAVTDELRDELVPINKKYPLKELMEACRD 254

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
              ++  R +TFEYVML GINDS +DA  L+K+LK +P+KINLIPFNP+P   Y CS ++
Sbjct: 255 NAKIAPRRTVTFEYVMLDGINDSLQDARGLVKLLKTVPSKINLIPFNPFPNSAYRCSSKE 314

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F   +  +G  + +R  RG DI AACGQL
Sbjct: 315 AINCFKTLLNDAGIVTTVRKTRGEDIDAACGQL 347


>gi|229592444|ref|YP_002874563.1| hypothetical protein PFLU5060 [Pseudomonas fluorescens SBW25]
 gi|259491993|sp|C3K1L7|RLMN_PSEFS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|229364310|emb|CAY52051.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 382

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 168/361 (46%), Positives = 224/361 (62%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALRDKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  AIAEVRGPEVVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++C+ Y   L   R +T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMATLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKNTPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|289207917|ref|YP_003459983.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix]
 gi|288943548|gb|ADC71247.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix]
          Length = 377

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 168/359 (46%), Positives = 225/359 (62%), Gaps = 21/359 (5%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G  R +L E L + G P    R R +Q+ KW++ RG+ DF  M+D+S+ +R  L + 
Sbjct: 10  NLLGYSRSQLTELLAQWGEP----RFRATQLVKWMHQRGVTDFDAMTDVSRTLRERLARE 65

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             I  PEI  EK S DGT KW+LR     +     IETV+IPE  RGTLC+SSQVGC+L 
Sbjct: 66  TEIALPEIALEKASGDGTVKWVLR-----LADGNAIETVFIPESGRGTLCISSQVGCALD 120

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC T  Q   RNLTA EI+ QV LA   L   P  E  +        R +SN+V+MGM
Sbjct: 121 CTFCSTAQQGFNRNLTAAEIIGQVWLAMQRL---PAPEGRQ--------RAVSNVVLMGM 169

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N+D V  +  + +D      S+RR+TLSTSG VP + R+ E   V LA+SLHA +
Sbjct: 170 GEPLANYDAVVAACQLMTDDNAYGLSRRRVTLSTSGLVPALDRLSEHTDVALAVSLHAPN 229

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLIKIL 306
           ++LR+ LVPINRKYP+  L+++CR Y   + A   +TFEYV+L G+ND P  A  L  +L
Sbjct: 230 DELRDRLVPINRKYPIARLMESCRRYVEATGAHSGVTFEYVLLAGVNDRPEHANQLAGVL 289

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +GIP KINLIPFNP+PG  +    + DI  F   ++++GY + +R  RG DI AACGQL
Sbjct: 290 RGIPGKINLIPFNPFPGAPFDRPAEGDIERFERQLQKAGYVTTVRRTRGDDIDAACGQL 348


>gi|77460825|ref|YP_350332.1| hypothetical protein Pfl01_4604 [Pseudomonas fluorescens Pf0-1]
 gi|123772061|sp|Q3K7B3|RLMN_PSEPF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|77384828|gb|ABA76341.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 382

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 165/361 (45%), Positives = 225/361 (62%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KNNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  AVAEVRGPEVVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           ++ R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TIDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVVAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++C+ Y   L   R +T EY +LK +ND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK IP KINLIPFNP+P   Y       I  F + + ++G++  +RT RG DI AACGQ
Sbjct: 288 LLKDIPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|218682815|ref|ZP_03530416.1| radical SAM enzyme, Cfr family protein [Rhizobium etli CIAT 894]
          Length = 240

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/220 (70%), Positives = 181/220 (82%)

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
           LGDFP  E  +G ++P+ GRK+SNIVMMGMGEPL NFD VK++L IA+D  GLS S+RR+
Sbjct: 6   LGDFPDREAPQGTIMPAEGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRV 65

Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
           TLSTSG VP I R GEEIGVMLAISLHAV +DLR+ILVPIN+KYPL+ LI+AC+ YPGLS
Sbjct: 66  TLSTSGVVPEIFRTGEEIGVMLAISLHAVRDDLRDILVPINKKYPLKELIEACKAYPGLS 125

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
           NARRITFEYVMLK +NDS  DA  LIK+LKG+PAKINLIPFNPWPG  Y CSD + I  F
Sbjct: 126 NARRITFEYVMLKDVNDSLEDAKGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKF 185

Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
           ++ I  +GY+SPIRTPRG DILAACGQLKS S+R+ K  R
Sbjct: 186 ADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTER 225


>gi|312962908|ref|ZP_07777395.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
           fluorescens WH6]
 gi|311282935|gb|EFQ61529.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
           fluorescens WH6]
          Length = 382

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 168/361 (46%), Positives = 224/361 (62%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  GI DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGIDDFDAMTNVSKALRDKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  TIAEVRGPEVVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVISAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++C+ Y   L   R +T EY +LK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMATLGEKRVLTIEYTLLKDINDKVEHAIEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKNTPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|220935219|ref|YP_002514118.1| radical SAM protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996529|gb|ACL73131.1| radical SAM protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 376

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 175/369 (47%), Positives = 227/369 (61%), Gaps = 32/369 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM R++LE     +G        R  Q+ KWI+   + DFQ M+D+S+ +R  L 
Sbjct: 6   KTNLLGMTRQQLEGFFTAMG----EKPFRAVQVLKWIHQHWVEDFQDMTDLSKALRERLA 61

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           Q   I  PE+V ++ S DGT KWLLR     CI      ETV+IPEK RGTLCVSSQVGC
Sbjct: 62  QVAEIRAPEVVYDQASADGTHKWLLRLDDGNCI------ETVFIPEKDRGTLCVSSQVGC 115

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLA-------RSLLGDFPGCEDIEGMVIPSVGR 177
           +L C+FC T  Q   RNL++ EI+ Q+ LA       R++ G  P              R
Sbjct: 116 ALDCTFCSTARQGFNRNLSSAEIVGQLWLANRRLAPERTVAGKAPE-------------R 162

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            +SN+V+MGMGEPL NFDNV  ++ +  D      SKRR+TLSTSG VP + R+ E + V
Sbjct: 163 VVSNVVLMGMGEPLLNFDNVVDAMRLMLDDNAYGLSKRRVTLSTSGIVPAMDRLKETLDV 222

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS-NARRITFEYVMLKGINDSP 296
            LA+SLHA ++ LR+ LVPINRKYP+  L+DACR Y     + +RITFEYVML+G+NDSP
Sbjct: 223 ALAVSLHAPNDALRDELVPINRKYPIAELLDACRRYVREERHHQRITFEYVMLEGVNDSP 282

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  LI +L+ +P KINLIPFNP+P   Y  S    I  F E +  +GY++  R  RG 
Sbjct: 283 EHARQLIALLRDVPCKINLIPFNPFPETRYRRSGDAAIRRFQEMLANAGYTTITRRTRGD 342

Query: 357 DILAACGQL 365
           DI AACGQL
Sbjct: 343 DIDAACGQL 351


>gi|330936987|gb|EGH41085.1| hypothetical protein PSYPI_01075 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 382

 Score =  319 bits (818), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 166/361 (45%), Positives = 224/361 (62%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +   L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALSEKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVP+N+KYPL++L+++CR Y   L   R +T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|330807644|ref|YP_004352106.1| hypothetical protein PSEBR_a933 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375752|gb|AEA67102.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 382

 Score =  318 bits (816), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 165/361 (45%), Positives = 223/361 (61%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V + IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  AVAEIRGPEVVSQDISSDGTRKWVVRVASGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVVSAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++C+ Y   L   R +T EY +LK +ND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK IP KINLIPFNP+P   Y       I  F + +  +G++  +RT RG DI AACGQ
Sbjct: 288 LLKNIPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|70732281|ref|YP_262037.1| radical SAM protein [Pseudomonas fluorescens Pf-5]
 gi|123748356|sp|Q4K6U6|RLMN_PSEF5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|68346580|gb|AAY94186.1| radical SAM enzyme, Cfr family [Pseudomonas fluorescens Pf-5]
          Length = 382

 Score =  318 bits (816), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 165/361 (45%), Positives = 223/361 (61%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  AVAEIRGPEVVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++C+ Y   L   R +T EY +LK +ND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK +P KINLIPFNP+P   Y       I  F + +  +G++  +RT RG DI AACGQ
Sbjct: 288 LLKDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|148359081|ref|YP_001250288.1| Cfr family transporter radical SAM protein [Legionella pneumophila
           str. Corby]
 gi|296107129|ref|YP_003618829.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99
           Alcoy]
 gi|205829782|sp|A5IC42|RLMN_LEGPC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|148280854|gb|ABQ54942.1| radical SAM enzyme, Cfr family [Legionella pneumophila str. Corby]
 gi|295649030|gb|ADG24877.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99
           Alcoy]
          Length = 382

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 167/334 (50%), Positives = 216/334 (64%), Gaps = 17/334 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+++WI+  GIRDF  M+++ + +R+ L+Q   I  PEIV  + S DGT KWLL+ 
Sbjct: 28  FRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLACIDLPEIVACQKSADGTHKWLLKL 87

Query: 93  P-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
               CI      ETV+IPE +RGTLCVSSQVGC+L CSFC T  Q   RNL+  EI+ QV
Sbjct: 88  ECGNCI------ETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 141

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            LA   L D  G  D          +KI+N+VMMGMGEPL NFDNV  ++SI  D +   
Sbjct: 142 WLAARELSDNNGAHD----------KKITNVVMMGMGEPLLNFDNVVSAMSIMMDDLAYG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+TLSTSG +P + R+ E   V LA+SLHA +++LRN LVPIN+KYPL  LI  C+
Sbjct: 192 LSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLCK 251

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y      R++TFEYVMLKG+ND P  A  LIK+L  +PAK+NLIPFNP+P  +Y  S +
Sbjct: 252 RYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNPFPLTQYQRSSR 311

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           + I  F + + + G ++  R  RG DI AACGQL
Sbjct: 312 ETIDAFRDKLIKHGINTITRKTRGDDIDAACGQL 345


>gi|54294410|ref|YP_126825.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
 gi|81368632|sp|Q5WWH4|RLMN_LEGPL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|53754242|emb|CAH15719.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
          Length = 382

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 166/334 (49%), Positives = 216/334 (64%), Gaps = 17/334 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+++WI+  GIRDF  M+++ + +R+ L+Q   I  PEIV  + S DGT KWLL+ 
Sbjct: 28  FRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLACIDLPEIVACQKSADGTHKWLLKL 87

Query: 93  P-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
               CI      ETV+IPE +RGTLCVSSQVGC+L CSFC T  Q   RNL+  EI+ QV
Sbjct: 88  ECGNCI------ETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 141

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            LA   L D  G  D          +KI+N+VMMGMGEPL NFDNV  +++I  D +   
Sbjct: 142 WLAARELSDNDGTHD----------KKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+TLSTSG +P + R+ E   V LA+SLHA +++LRN LVPIN+KYPL  LI  C+
Sbjct: 192 LSKRRVTLSTSGVIPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLCK 251

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y      R++TFEYVMLKG+ND P  A  LIK+L  +PAK+NLIPFNP+P  +Y  S +
Sbjct: 252 RYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNPFPLTQYQRSSR 311

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           + I  F + + + G ++  R  RG DI AACGQL
Sbjct: 312 ETIDAFRDKLMKHGINTITRKTRGDDIDAACGQL 345


>gi|330813248|ref|YP_004357487.1| ribosomal RNA large subunit methyltransferase N [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486343|gb|AEA80748.1| ribosomal RNA large subunit methyltransferase N [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 356

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 156/351 (44%), Positives = 229/351 (65%), Gaps = 18/351 (5%)

Query: 24  IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD 83
             + ++   MRT+QIWK++Y +G+R+    S+IS E+++ + + F+     I ++KIS D
Sbjct: 22  FSLEKKKTSMRTNQIWKFVYKKGLRETSKFSNISSELKYNIEKSFNFNRTNIAEKKISKD 81

Query: 84  GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
           GT KWLL+     +     +ETV+IP   RGTLCVSSQVGC+L C FC+TGTQ +V+NLT
Sbjct: 82  GTIKWLLKLSDNNL-----VETVFIPSGKRGTLCVSSQVGCTLNCKFCHTGTQLMVKNLT 136

Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
             EI+ Q+L+A+  L D+               +KI+NIV MGMGEP  N+DNVKKS+SI
Sbjct: 137 THEIINQILVAKDELNDWGS------------QKKITNIVYMGMGEPFYNYDNVKKSISI 184

Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263
             +  GL +S ++IT+ST+G    I +  +EIG  LA+SLHA +++LR  ++PIN+K+ +
Sbjct: 185 LRERNGLDYSAKKITVSTAGISNEIMKAADEIGTYLALSLHAPTDELREKIMPINKKFKI 244

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
           + LI++C +Y  + N  +I  EYV+LK IND+   A  L+K++   P+K+NLI FN WPG
Sbjct: 245 KDLIESCSYYSKI-NKEKIFLEYVLLKDINDTDSCAQQLVKLMSKFPSKLNLIEFNAWPG 303

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374
             Y  SD + +  F E IK+SG+   +R  RG DIL ACGQLK+ S++  K
Sbjct: 304 VGYEPSDSETVQKFYEKIKKSGHIVTLRKSRGEDILGACGQLKTDSEKKRK 354


>gi|325272138|ref|ZP_08138570.1| radical SAM protein [Pseudomonas sp. TJI-51]
 gi|324102734|gb|EGC00149.1| radical SAM protein [Pseudomonas sp. TJI-51]
          Length = 381

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 166/361 (45%), Positives = 219/361 (60%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKALREKLE 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V E IS DGTRKW++R  +        +ETVYIP   RGTLCVSSQ GC+
Sbjct: 63  AVAEIRPPEVVSEDISADGTRKWVIRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV LA    G  P            + R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPA----------KIDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL+ML+++C  Y   L   R +T EY +LK +ND P  A  +I+
Sbjct: 228 PNDELRNKLVPINKKYPLKMLLESCMGYMATLGGKRVLTIEYTLLKDVNDQPEHAAQMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ +P KINLIPFNP+P   Y       I  F + +   G++   RT RG DI AACGQ
Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|218660671|ref|ZP_03516601.1| hypothetical protein RetlI_14322 [Rhizobium etli IE4771]
          Length = 245

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 145/224 (64%), Positives = 184/224 (82%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG+ REE+  AL + G+ ++ ++MR +Q+W WIYVRG+ DF  M+++++++R +L
Sbjct: 22  EKPSLIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 81

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            QHF+I  PEIV+E++S DGTRKWLLRFPAR  G PVEIE VYIPE+ RGTLC+SSQVGC
Sbjct: 82  KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 141

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SNIVM
Sbjct: 142 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 201

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
           MGMGEPL NFD VK++L IA+D  GLS SKRR+TLSTSG VP I
Sbjct: 202 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEI 245


>gi|52841777|ref|YP_095576.1| radical SAM protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52628888|gb|AAU27629.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 386

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/334 (49%), Positives = 216/334 (64%), Gaps = 17/334 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+++WI+  GIRDF  M+++ + +R+ L+Q   I  PEIV  + S DGT KWLL+ 
Sbjct: 32  FRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLACIDLPEIVACQKSADGTHKWLLKL 91

Query: 93  P-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
               CI      ETV+IPE +RGTLCVSSQVGC+L CSFC T  Q   RNL+  EI+ QV
Sbjct: 92  ECGNCI------ETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 145

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            LA   L D  G  D          +KI+N+VMMGMGEPL NFDNV  +++I  D +   
Sbjct: 146 WLAARELSDNNGTHD----------KKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYG 195

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+TLSTSG +P + R+ E   V LA+SLHA +++LRN LVPIN+KYPL  LI  C+
Sbjct: 196 LSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLCK 255

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y      R++TFEYVMLKG+ND P  A  LIK+L  +PAK+NLIPFNP+P  +Y  S +
Sbjct: 256 RYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNPFPLTQYQRSSR 315

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           + I  F + + + G ++  R  RG DI AACGQL
Sbjct: 316 ETIDAFRDKLMKHGINTITRKTRGDDIDAACGQL 349


>gi|170723489|ref|YP_001751177.1| radical SAM protein [Pseudomonas putida W619]
 gi|205829826|sp|B1JDQ5|RLMN_PSEPW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|169761492|gb|ACA74808.1| radical SAM enzyme, Cfr family [Pseudomonas putida W619]
          Length = 381

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/361 (45%), Positives = 219/361 (60%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKALREKLE 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V E IS DGTRKW++R  +        +ETVYIP   RGTLCVSSQ GC+
Sbjct: 63  AVAEIRPPEVVSEDISADGTRKWVIRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV LA    G  P            + R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPA----------KIDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL+ML+++C  Y   L   R +T EY +LK +ND P  A  +I+
Sbjct: 228 PNDELRNQLVPINKKYPLKMLLESCMGYMATLGGKRVLTVEYTLLKDVNDQPEHAAQMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ +P KINLIPFNP+P   Y       I  F + +   G++   RT RG DI AACGQ
Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|205829856|sp|Q5ZV93|RLMN_LEGPH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|307610246|emb|CBW99808.1| hypothetical protein LPW_15701 [Legionella pneumophila 130b]
          Length = 382

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/334 (49%), Positives = 216/334 (64%), Gaps = 17/334 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+++WI+  GIRDF  M+++ + +R+ L+Q   I  PEIV  + S DGT KWLL+ 
Sbjct: 28  FRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLACIDLPEIVACQKSADGTHKWLLKL 87

Query: 93  P-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
               CI      ETV+IPE +RGTLCVSSQVGC+L CSFC T  Q   RNL+  EI+ QV
Sbjct: 88  ECGNCI------ETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 141

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            LA   L D  G  D          +KI+N+VMMGMGEPL NFDNV  +++I  D +   
Sbjct: 142 WLAARELSDNNGTHD----------KKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+TLSTSG +P + R+ E   V LA+SLHA +++LRN LVPIN+KYPL  LI  C+
Sbjct: 192 LSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLCK 251

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y      R++TFEYVMLKG+ND P  A  LIK+L  +PAK+NLIPFNP+P  +Y  S +
Sbjct: 252 RYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNPFPLTQYQRSSR 311

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           + I  F + + + G ++  R  RG DI AACGQL
Sbjct: 312 ETIDAFRDKLMKHGINTITRKTRGDDIDAACGQL 345


>gi|330504682|ref|YP_004381551.1| radical SAM protein [Pseudomonas mendocina NK-01]
 gi|328918968|gb|AEB59799.1| radical SAM protein [Pseudomonas mendocina NK-01]
          Length = 382

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 165/365 (45%), Positives = 222/365 (60%), Gaps = 20/365 (5%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R
Sbjct: 3   NTTGKINLLGLTQPEMEQFFESIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKALR 58

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L     I  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ
Sbjct: 59  EKLEASAEIRGPEVVSENISADGTRKWVVRVASGSC-----VETVYIPQNGRGTLCVSSQ 113

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC+L CSFC TG Q    +LT+ EI+ QV +A    G  P            + R I+N
Sbjct: 114 AGCALDCSFCSTGKQGFNSDLTSAEIIGQVWIANKSFGTVPA----------KIDRAITN 163

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL NFDNV  ++ I  D +G   SKR++TLSTSG VP I ++ E I V LA+
Sbjct: 164 VVMMGMGEPLLNFDNVVSAMQIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLAL 223

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDAL 300
           SLHA +++LRN LVPIN+KYPL+ML+ AC+ Y   L   R +T EY +LKG+ND    A 
Sbjct: 224 SLHAPNDELRNQLVPINKKYPLDMLLAACKRYVSKLGEKRVLTIEYTLLKGVNDQLEHAE 283

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            +I +L  +P KINLIPFNP+P   Y       I  F + + ++G++  +R  RG DI A
Sbjct: 284 QMIALLADVPCKINLIPFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRATRGDDIDA 343

Query: 361 ACGQL 365
           ACGQL
Sbjct: 344 ACGQL 348


>gi|87118480|ref|ZP_01074379.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
 gi|86166114|gb|EAQ67380.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
          Length = 378

 Score =  316 bits (810), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 168/366 (45%), Positives = 224/366 (61%), Gaps = 18/366 (4%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  +KK +L+G+  +++ E    IG      + R +Q+ KWI+ +G  DF  M+D+S+ +
Sbjct: 8   MTDVKKVNLLGLPPKKMIEFFESIG----EKKFRATQVLKWIHQKGADDFDQMTDVSKAL 63

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           RH L     I  PE+V + IS DGTRKW++R      GG   +ETV IP+  R TLCVSS
Sbjct: 64  RHKLKDISEIRAPEVVSQNISNDGTRKWIIRTEG---GGNNCVETVLIPDGDRATLCVSS 120

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL CSFC TG Q   RNLT  E++ QV +A    G F           P+  R+++
Sbjct: 121 QVGCSLDCSFCSTGKQGFNRNLTPSEVIGQVWVAIKSFGPFD----------PNGPRRVT 170

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL NF+ V  ++++  D      SKRR+TLSTSG VP I  + E   V LA
Sbjct: 171 NVVMMGMGEPLMNFEPVVDAMTLMMDDNAYGMSKRRVTLSTSGVVPKIYELAERTDVSLA 230

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDA 299
           ISLHA +N+LR++LVPIN+KYP+  L+ AC+HY   L + R IT EY M+ G+NDS   A
Sbjct: 231 ISLHAPTNELRDVLVPINKKYPINELLGACQHYLTSLPDKRHITIEYTMMAGVNDSEEQA 290

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L K+LK +  KINLIPFNP+P   Y       +  F + +   GY+  +RT RG DI 
Sbjct: 291 RALSKLLKTLECKINLIPFNPFPNSGYDKPSNNQVRRFQKVLADDGYTVTVRTTRGDDID 350

Query: 360 AACGQL 365
           AACGQL
Sbjct: 351 AACGQL 356


>gi|160871646|ref|ZP_02061778.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
 gi|159120445|gb|EDP45783.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
          Length = 372

 Score =  315 bits (808), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 177/356 (49%), Positives = 218/356 (61%), Gaps = 23/356 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q  KWI+  GI D   MS+ S+ +R  L     I  PEI+ EK S DGT+KWLLR 
Sbjct: 28  FRAQQALKWIHQEGITDIDKMSNFSKSLRSRLKTIAQIDLPEIIIEKKSEDGTKKWLLRL 87

Query: 93  P-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
             A C+      ETV+IPE+ RGTLCVSSQVGC+L CSFC T  Q   RNLT  EI+ QV
Sbjct: 88  TDANCV------ETVFIPERGRGTLCVSSQVGCALNCSFCSTAQQGFNRNLTVAEIIGQV 141

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            LA   L       D            +SNIVMMGMGEPL NFD+V K++++  D  G  
Sbjct: 142 WLAVRCLSRDSLRHD----------HTVSNIVMMGMGEPLLNFDSVVKAMNLMMDDFGYG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           FSKRR+TLSTSG VP + R+ +   V LAISLHA +++LR+ LVPIN+KYPL  L++ CR
Sbjct: 192 FSKRRVTLSTSGVVPALRRLSKASEVSLAISLHAPNDELRDRLVPINKKYPLSELLEVCR 251

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y    + RR+T EYVML+GIND P  A  LIKIL+GIP KINLIPFNP+P   Y  S Q
Sbjct: 252 NYFRSEHRRRVTMEYVMLEGINDQPEHARQLIKILEGIPVKINLIPFNPFPFARYRRSSQ 311

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL------KSLSKRIPKVPRQEMQ 381
             I  F   + ++G ++  R  RG DI AACGQL      +S  KR  K     +Q
Sbjct: 312 ITIERFKSILVKAGLNTITRKTRGEDIDAACGQLVGYVHDRSYHKRHQKAVSTSIQ 367


>gi|117926273|ref|YP_866890.1| radical SAM protein [Magnetococcus sp. MC-1]
 gi|205829786|sp|A0LBZ1|RLMN_MAGSM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|117610029|gb|ABK45484.1| 23S rRNA m(2)A-2503 methyltransferase [Magnetococcus sp. MC-1]
          Length = 356

 Score =  315 bits (808), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 165/363 (45%), Positives = 225/363 (61%), Gaps = 31/363 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L +E+L  ++ E+L E              R  Q+W W++V+  +    MSD+S + R  
Sbjct: 11  LTREALTSLVVEQLGEK-----------PFRARQLWSWLHVKLAQHLDEMSDLSIDFRRK 59

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+   + + PE+   +IS DGT KWLLR     +    +IETVYIPE  RGTLC+SSQVG
Sbjct: 60  LSALSTPLRPEVSTHQISRDGTEKWLLR-----LSDGQQIETVYIPEDERGTLCISSQVG 114

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C FC+TG Q   RNLT  EI+ QVL AR  L               +  ++++NIV
Sbjct: 115 CTLSCPFCHTGAQGFARNLTPSEIVQQVLFARRTLA--------------ARDKRVTNIV 160

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++ V+ ++ I  D  GL+F  R++TLST+G +P + + G E+GV LAISL
Sbjct: 161 LMGMGEPLYNYEAVRDAVLILLDDSGLAFGTRKVTLSTAGLLPKMEQAGRELGVNLAISL 220

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV + LR+ LVP+N+KY L+ L  A   YP L + RR+T+EYVML G+NDS  DA   +
Sbjct: 221 HAVRDTLRDELVPLNKKYNLQALRAATLRYP-LKSGRRVTWEYVMLHGVNDSEDDARLFV 279

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
             LK IP+KINLIPFNPWPG  Y  S    I  F + + ++G+ + IR  RG DI AACG
Sbjct: 280 SFLKDIPSKINLIPFNPWPGVPYQSSSMTRIAAFQKILYQAGFVTVIRDRRGEDIDAACG 339

Query: 364 QLK 366
           QLK
Sbjct: 340 QLK 342


>gi|167031908|ref|YP_001667139.1| radical SAM protein [Pseudomonas putida GB-1]
 gi|205829825|sp|B0KPI4|RLMN_PSEPG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|166858396|gb|ABY96803.1| radical SAM enzyme, Cfr family [Pseudomonas putida GB-1]
          Length = 381

 Score =  315 bits (807), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 166/361 (45%), Positives = 219/361 (60%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLE 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V E IS DGTRKW++R  +        +ETVYIP   RGTLCVSSQ GC+
Sbjct: 63  AVAEIRPPEVVSEDISADGTRKWVIRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV LA    G  P            V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPA----------KVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL++L+++C  Y   L   R +T EY +LK +ND P  A  +I+
Sbjct: 228 PNDELRNKLVPINKKYPLKVLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ +P KINLIPFNP+P   Y       I  F + +   G++   RT RG DI AACGQ
Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|26987586|ref|NP_743011.1| radical SAM enzyme, Cfr family [Pseudomonas putida KT2440]
 gi|148546124|ref|YP_001266226.1| radical SAM protein [Pseudomonas putida F1]
 gi|81586431|sp|Q88PK0|RLMN_PSEPK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829824|sp|A5VYT2|RLMN_PSEP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|24982262|gb|AAN66475.1|AE016276_10 conserved hypothetical protein TIGR00048 [Pseudomonas putida
           KT2440]
 gi|148510182|gb|ABQ77042.1| radical SAM enzyme, Cfr family [Pseudomonas putida F1]
 gi|313497219|gb|ADR58585.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
           BIRD-1]
          Length = 381

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 166/361 (45%), Positives = 219/361 (60%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLE 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V E IS DGTRKW++R  +        +ETVYIP   RGTLCVSSQ GC+
Sbjct: 63  AVAEIRPPEVVSEDISADGTRKWVIRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV LA    G  P            V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPA----------KVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL++L+++C  Y   L   R +T EY +LK +ND P  A  +I+
Sbjct: 228 PNDELRNKLVPINKKYPLKVLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ +P KINLIPFNP+P   Y       I  F + +   G++   RT RG DI AACGQ
Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|327481756|gb|AEA85066.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
           stutzeri DSM 4166]
          Length = 382

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 167/361 (46%), Positives = 219/361 (60%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + +LE     IG      R R  Q+ KWI+  G+ DF  MS++ + +R  L 
Sbjct: 7   KVNLLGLTQPQLESFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PEIV E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEIRGPEIVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P            + R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPA----------KIDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D +G   SKR++TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LR+ LVPIN+KYPL++L+ AC+ Y   L   R +T EY +LKG+ND P  A  +I 
Sbjct: 228 PNDALRDQLVPINKKYPLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIA 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  IP KINLIPFNP+P   Y       I  F + + + G++  +RT RG DI AACGQ
Sbjct: 288 LLADIPCKINLIPFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|205829717|sp|A4VNX4|RLMN_PSEU5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 382

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 167/361 (46%), Positives = 218/361 (60%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + +LE     IG      R R  Q+ KWI+  G+ DF  MS++ + +R  L 
Sbjct: 7   KVNLLGLTQPQLESFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PEIV E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEIRGPEIVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P            + R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPA----------KIDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D +G   SKR++TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLIK 304
            +  LR+ LVPIN+KYPL++L+ AC+ Y   L   R +T EY +LKG+ND P  A  +I 
Sbjct: 228 PNEALRDQLVPINKKYPLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIA 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  IP KINLIPFNP+P   Y       I  F + + + G++  +RT RG DI AACGQ
Sbjct: 288 LLADIPCKINLIPFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|304311805|ref|YP_003811403.1| hypothetical protein HDN1F_21750 [gamma proteobacterium HdN1]
 gi|301797538|emb|CBL45758.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 410

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 167/363 (46%), Positives = 231/363 (63%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM R ELE+  + +G        R  Q+ KWI+  G+ DF  M+++S+++R  L
Sbjct: 6   EKANLLGMTRRELEDFFVSLG----EKPFRAHQVMKWIHFFGVDDFDQMTNVSRDLREKL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  P I  E IS DGTRKW++R     +     +ETV+IP+ +RGTLCVSSQVGC
Sbjct: 62  KAVAVIPAPAISYENISKDGTRKWVIR-----LDNGNAVETVFIPDGNRGTLCVSSQVGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           SL CSFC TG Q   R+LTA EI+ Q+ +A RS      G  D +G       R I+N+V
Sbjct: 117 SLDCSFCSTGKQGFQRDLTAAEIIAQLWVANRSF-----GVPDNKGH------RNITNVV 165

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N DNV  ++ I  D +G   +++R+TLSTSG VP +  + + I V LA+SL
Sbjct: 166 MMGMGEPLLNLDNVVSAMEIMKDDLGYGVARKRVTLSTSGVVPKMYELFDRIDVSLAVSL 225

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNL 302
           HA ++ LR+ L+PINRKYPL  L+ ACR+Y    ++ RR+T EYV+L GIND+   A  L
Sbjct: 226 HAPNDTLRDELMPINRKYPLAELLKACRYYVDKYNDGRRVTMEYVLLDGINDTFAHAAEL 285

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +++L+ +P+KINLIPFNP+P   Y   +   +  F E + ++ Y + IRT RG DI AAC
Sbjct: 286 VELLRDVPSKINLIPFNPFPHAPYKRPNGYRVKAFQEVLLKADYVTTIRTTRGDDIDAAC 345

Query: 363 GQL 365
           GQL
Sbjct: 346 GQL 348


>gi|332678238|gb|AEE87367.1| radical SAM superfamily protein [Francisella cf. novicida Fx1]
          Length = 370

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 161/362 (44%), Positives = 229/362 (63%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++ +E+  + IG  + H R    Q++KWI+ +G+ DF  M+D+ + +RH L 
Sbjct: 5   KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P++V  K S DGT KWL+      +GG   +ETV+IPE+ RGTLCVSSQVGC+
Sbjct: 61  EKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQVGCT 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVMM
Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLHA
Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ IND+  DA  L+ +
Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEINDNLSDAEQLVAL 284

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           LK   +PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AACG
Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344

Query: 364 QL 365
           QL
Sbjct: 345 QL 346


>gi|325915372|ref|ZP_08177689.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538419|gb|EGD10098.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 401

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 164/373 (43%), Positives = 229/373 (61%), Gaps = 28/373 (7%)

Query: 4   LKKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
           ++K++L+ + RE LE    + +G      R R  Q+ KWI+ R + DF  M+D+ + +R 
Sbjct: 20  MRKQNLLDLDREGLERFFAETLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRA 75

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L+QH  ++ P +V +K S DGT KWLL   A    G   +ETVYIP+KSRGTLCVSSQV
Sbjct: 76  KLHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAVETVYIPDKSRGTLCVSSQV 132

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+
Sbjct: 133 GCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNV 181

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+S
Sbjct: 182 VMMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSAESDVSLAVS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALN 301
           LHA ++ LR  LVP+N+KYP+  L+++C  Y   S  R  +TFEY ++KGIND P  A  
Sbjct: 242 LHAANDSLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQ 301

Query: 302 LIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           L ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  
Sbjct: 302 LARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRT 361

Query: 354 RGLDILAACGQLK 366
           RG DI AACGQLK
Sbjct: 362 RGDDIDAACGQLK 374


>gi|54297459|ref|YP_123828.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
 gi|81370554|sp|Q5X516|RLMN_LEGPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|53751244|emb|CAH12655.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
          Length = 382

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 165/334 (49%), Positives = 215/334 (64%), Gaps = 17/334 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+++WI+  GI DF  M+++ + +R+ L+Q   I  PEIV  + S DGT KWLL+ 
Sbjct: 28  FRAQQLFQWIHQVGICDFAQMTNLGKVLRNKLSQLACIDLPEIVACQKSADGTHKWLLKL 87

Query: 93  P-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
               CI      ETV+IPE +RGTLCVSSQVGC+L CSFC T  Q   RNL+  EI+ QV
Sbjct: 88  ECGNCI------ETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 141

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            LA   L D  G  D          +KI+N+VMMGMGEPL NFDNV  +++I  D +   
Sbjct: 142 WLAARELSDNNGTHD----------KKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+TLSTSG +P + R+ E   V LA+SLHA +++LRN LVPIN+KYPL  LI  C+
Sbjct: 192 LSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLCK 251

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y      R++TFEYVMLKG+ND P  A  LIK+L  +PAK+NLIPFNP+P  +Y  S +
Sbjct: 252 RYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNPFPLTQYQRSSR 311

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           + I  F + + + G ++  R  RG DI AACGQL
Sbjct: 312 ETIDAFRDKLMKHGINTITRKTRGDDIDAACGQL 345


>gi|254374354|ref|ZP_04989836.1| hypothetical protein FTDG_00521 [Francisella novicida GA99-3548]
 gi|151572074|gb|EDN37728.1| hypothetical protein FTDG_00521 [Francisella novicida GA99-3548]
          Length = 370

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 161/362 (44%), Positives = 229/362 (63%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++ +E+  + IG  + H R    Q++KWI+ +G+ DF  M+D+ + +RH L 
Sbjct: 5   KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P++V  K S DGT KWL+      +GG   +ETV+IPE+ RGTLCVSSQVGC+
Sbjct: 61  EKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQVGCT 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVMM
Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLHA
Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ IND+  DA  L+ +
Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEINDNLSDAEELVAL 284

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           LK   +PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AACG
Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344

Query: 364 QL 365
           QL
Sbjct: 345 QL 346


>gi|104780237|ref|YP_606735.1| radical SAM protein [Pseudomonas entomophila L48]
 gi|122985951|sp|Q1IEI4|RLMN_PSEE4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|95109224|emb|CAK13921.1| putative radical SAM enzyme, Cfr family [Pseudomonas entomophila
           L48]
          Length = 379

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 165/361 (45%), Positives = 218/361 (60%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+   E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KINLLGLTLAEMEQFFDSIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKVLREKLE 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V E IS DGTRKW++R  +        +ETVYIP   RGTLCVSSQ GC+
Sbjct: 63  AVAEIRGPEVVSEDISADGTRKWVVRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV LA    G  P            + R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPA----------KIDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  + +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMEDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL+ML+++C  Y   L   R +T EY +LK +ND P  A  +I+
Sbjct: 228 PNDELRNKLVPINKKYPLKMLLESCMGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ +P KINLIPFNP+P   Y       I  F + +   G++   RT RG DI AACGQ
Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|254369341|ref|ZP_04985353.1| radical SAM superfamily protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122291|gb|EDO66431.1| radical SAM superfamily protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 370

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 159/362 (43%), Positives = 229/362 (63%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++ +E+  + IG  + H R    Q++KWI+ +G+ DF  M+D+ + +RH L 
Sbjct: 5   KVNLLGLNQKAIEDFFISIGKKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  P++V  K+S DGT KWL+      +GG   +ETV+IPE+ RGTLCVSSQ+GC+
Sbjct: 61  DKAQITIPKVVFSKVSKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQIGCT 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVMM
Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVMM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLHA
Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+ +
Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVAL 284

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           LK   +PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AACG
Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344

Query: 364 QL 365
           QL
Sbjct: 345 QL 346


>gi|285018369|ref|YP_003376080.1| hypothetical protein XALc_1591 [Xanthomonas albilineans GPE PC73]
 gi|283473587|emb|CBA16090.1| conserved hypothetical protein 48 [Xanthomonas albilineans]
          Length = 401

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 167/372 (44%), Positives = 228/372 (61%), Gaps = 30/372 (8%)

Query: 6   KESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +++L+ + RE LE    + +G      R R  Q+ KWI+ R + DF+ M+D+ + +R  L
Sbjct: 22  RQNLLDLDREGLERFFAETLG----EARYRAHQVMKWIHHRYVTDFEQMTDLGKALRAKL 77

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            QH  +I P IV +K S DGT KWLL   A  + G   IETVYIP+K RGTLCVSSQVGC
Sbjct: 78  QQHAEVIVPNIVFDKPSADGTHKWLL---AMGVDGKNAIETVYIPDKGRGTLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L CSFC T TQ   RNL+  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 135 GLNCSFCSTATQGFNRNLSTAEIVGQVWVAARHLGN-----------VPHQQRRLTNVVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSGESDVSLAVSLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302
           A ++ LR  LVP+N+KYP+  L+ AC  Y   +N RR  +TFEY ++KGIND P  A  L
Sbjct: 244 APNDTLRETLVPLNKKYPIAELMAACARYL-RANKRRESVTFEYTLMKGINDQPEHARQL 302

Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  R
Sbjct: 303 ARLMRQFDNAVQAANAGKVNLIPFNPFPGTRYARSGETEIRAFQKILLDAQVLTMVRRTR 362

Query: 355 GLDILAACGQLK 366
           G DI AACGQLK
Sbjct: 363 GDDIDAACGQLK 374


>gi|118497539|ref|YP_898589.1| radical SAM superfamily protein [Francisella tularensis subsp.
           novicida U112]
 gi|195536235|ref|ZP_03079242.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp.
           novicida FTE]
 gi|208779338|ref|ZP_03246684.1| radical SAM enzyme, Cfr family [Francisella novicida FTG]
 gi|254372900|ref|ZP_04988389.1| hypothetical protein FTCG_00471 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|205829766|sp|A0Q6H0|RLMN_FRATN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118423445|gb|ABK89835.1| radical SAM superfamily protein [Francisella novicida U112]
 gi|151570627|gb|EDN36281.1| hypothetical protein FTCG_00471 [Francisella novicida GA99-3549]
 gi|194372712|gb|EDX27423.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp.
           novicida FTE]
 gi|208745138|gb|EDZ91436.1| radical SAM enzyme, Cfr family [Francisella novicida FTG]
          Length = 370

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 160/362 (44%), Positives = 229/362 (63%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++ +E+  + IG  + H R    Q++KWI+ +G+ DF  M+D+ + +RH L 
Sbjct: 5   KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P++V  K S DGT KWL+      +GG   +ETV+IPE+ RGTLCVSSQVGC+
Sbjct: 61  EKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQVGCT 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVMM
Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLHA
Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+ +
Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVAL 284

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           LK   +PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AACG
Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344

Query: 364 QL 365
           QL
Sbjct: 345 QL 346


>gi|187931627|ref|YP_001891611.1| radical SAM enzyme domain, Cfr family [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|205829765|sp|B2SGH6|RLMN_FRATM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|187712536|gb|ACD30833.1| radical SAM enzyme domain, Cfr family [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 370

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 160/362 (44%), Positives = 229/362 (63%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++ +E+  + IG  + H R    Q++KWI+ +G+ DF  M+D+ + +RH L 
Sbjct: 5   KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P++V  K S DGT KWL+      +GG   +ETV+IPE+ RGTLCVSSQVGC+
Sbjct: 61  EKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQVGCT 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVMM
Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLHA
Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+ +
Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQNGPHKHITFEYTLMEEVNDNLSDAEELVAL 284

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           LK   +PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AACG
Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344

Query: 364 QL 365
           QL
Sbjct: 345 QL 346


>gi|254490112|ref|ZP_05103304.1| radical SAM enzyme, Cfr family [Methylophaga thiooxidans DMS010]
 gi|224464700|gb|EEF80957.1| radical SAM enzyme, Cfr family [Methylophaga thiooxydans DMS010]
          Length = 367

 Score =  312 bits (799), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 165/376 (43%), Positives = 234/376 (62%), Gaps = 24/376 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+  + LE   +++G        R  Q+ +WI+   + DF  M+++S+ +R  L   
Sbjct: 6   NLLGLDLKGLEAFFVELG----EKPFRARQLLQWIHKYRVVDFAEMTNLSKALREKLQAV 61

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             I  PE++ E IS DGTRKW+++    C      IETV+IPE  RGTLCVSSQVGC+LT
Sbjct: 62  SDIRLPEVLHEHISTDGTRKWIIKLS--CGNA---IETVFIPEGGRGTLCVSSQVGCALT 116

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC T  Q   RNL A EI+ Q+ +A   LG             P   R ++N+VMMGM
Sbjct: 117 CTFCSTAQQGFNRNLDAAEIIAQLWIANEALGK-----------DPKGNRVVTNVVMMGM 165

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N++NV  ++++  D  G   S RR+TLSTSG VP I ++ E+  V LAISLHA +
Sbjct: 166 GEPLANYNNVVTAMNLMRDDYGYGISWRRLTLSTSGIVPMIDKLREDCHVSLAISLHAAN 225

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           ++LR+ +VPIN+KYP++ L+ AC+ Y      R IT EYVML GINDS +DA +L++ILK
Sbjct: 226 DELRDQIVPINQKYPIKELLAACKRYVVGQQRRHITVEYVMLDGINDSMQDAKDLVRILK 285

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL-- 365
            +P KIN+IPFNP+PG +Y CS +  I  F   +   G  + +R  RG DI+AACGQL  
Sbjct: 286 DLPTKINMIPFNPFPGTDYTCSSRNQIKRFQNYLIEQGMVATVRKTRGDDIVAACGQLAG 345

Query: 366 --KSLSKRIPKVPRQE 379
             +  S+R  ++ +Q+
Sbjct: 346 EVQDKSRRAERMAKQQ 361


>gi|58582157|ref|YP_201173.1| hypothetical protein XOO2534 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624049|ref|YP_451421.1| hypothetical protein XOO_2392 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|75435230|sp|Q5GZT3|RLMN_XANOR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123521888|sp|Q2P2T0|RLMN_XANOM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829944|sp|B2SMB3|RLMN_XANOP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|58426751|gb|AAW75788.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367989|dbj|BAE69147.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 401

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%)

Query: 5   KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K++L+ + RE LE      +G      R R  Q+ KWI+ R + DF  M+D+ + +R  
Sbjct: 21  RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAK 76

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVG
Sbjct: 77  LHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 133

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L CSFC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+V
Sbjct: 134 CGLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 182

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SL
Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 242

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302
           HA ++ LR  LVP+N+KYP+  L+++C  Y   S  R  +TFEY ++KGIND P  A  L
Sbjct: 243 HAANDALRETLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 302

Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  R
Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTIVRRTR 362

Query: 355 GLDILAACGQLK 366
           G DI AACGQLK
Sbjct: 363 GDDIDAACGQLK 374


>gi|188576716|ref|YP_001913645.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188576907|ref|YP_001913836.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521168|gb|ACD59113.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521359|gb|ACD59304.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 393

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%)

Query: 5   KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K++L+ + RE LE      +G      R R  Q+ KWI+ R + DF  M+D+ + +R  
Sbjct: 13  RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAK 68

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVG
Sbjct: 69  LHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 125

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L CSFC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+V
Sbjct: 126 CGLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 174

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SL
Sbjct: 175 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 234

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302
           HA ++ LR  LVP+N+KYP+  L+++C  Y   S  R  +TFEY ++KGIND P  A  L
Sbjct: 235 HAANDALRETLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 294

Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  R
Sbjct: 295 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTIVRRTR 354

Query: 355 GLDILAACGQLK 366
           G DI AACGQLK
Sbjct: 355 GDDIDAACGQLK 366


>gi|166712105|ref|ZP_02243312.1| hypothetical protein Xoryp_11775 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 393

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%)

Query: 5   KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K++L+ + RE LE      +G      R R  Q+ KWI+ R + DF  M+D+ + +R  
Sbjct: 13  RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAK 68

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVG
Sbjct: 69  LHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 125

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L CSFC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+V
Sbjct: 126 CGLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 174

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SL
Sbjct: 175 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 234

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302
           HA ++ LR  LVP+N+KYP+  L+++C  Y   S  R  +TFEY ++KGIND P  A  L
Sbjct: 235 HAANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 294

Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  R
Sbjct: 295 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 354

Query: 355 GLDILAACGQLK 366
           G DI AACGQLK
Sbjct: 355 GDDIDAACGQLK 366


>gi|205829947|sp|Q8PKZ1|RLMN_XANAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 401

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%)

Query: 5   KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K++L+ + RE LE      +G      R R  Q+ KWI+ R + DF  M+D+ + +R  
Sbjct: 21  RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAK 76

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVG
Sbjct: 77  LHQHAEVLVPNVVFDKPSADGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 133

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L CSFC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+V
Sbjct: 134 CGLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 182

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SL
Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 242

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302
           HA ++ LR  LVP+N+KYP+  L+++C  Y   S  R  +TFEY ++KGIND P  A  L
Sbjct: 243 HAANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 302

Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  R
Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 362

Query: 355 GLDILAACGQLK 366
           G DI AACGQLK
Sbjct: 363 GDDIDAACGQLK 374


>gi|300113467|ref|YP_003760042.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
 gi|299539404|gb|ADJ27721.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
          Length = 372

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/333 (49%), Positives = 210/333 (63%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WIY R + DF  M+D+++ +R  L +   I  PEIV +  S DGTRKWLLR 
Sbjct: 28  FRARQVLRWIYQRFVTDFSAMTDLNKSLRKRLAESAVISLPEIVQQHRSADGTRKWLLR- 86

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               I G   IETV+IPE+ RGTLC+SSQVGC L CSFC TG Q   RNL   EI+ Q+ 
Sbjct: 87  ----IHGNNCIETVFIPEEDRGTLCISSQVGCILDCSFCATGKQGFNRNLAISEIIGQLW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           LA  +LG  P  E I           I+N+VMMGMGEPL NF+NV  ++++  D      
Sbjct: 143 LANKILGRTPKGERI-----------ITNVVMMGMGEPLANFNNVVAAMNLMLDDFSYGL 191

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S RR+TLST+G VP I R+     V LA+SLHA ++ LR+ LVP+N+KYPLE L+ ACR 
Sbjct: 192 SWRRVTLSTAGMVPAIDRLRAVCPVSLAVSLHAPTDKLRDELVPLNKKYPLEDLLSACRR 251

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y      R +TFEYVML  +NDS   A  L+++L+G+PAK+NLIPFNP+PG  Y  SD +
Sbjct: 252 YVAGDRRRAVTFEYVMLADVNDSFSHARALLRLLQGLPAKVNLIPFNPFPGSVYRRSDAE 311

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F E + R G  +  R  RG DI AACGQL
Sbjct: 312 TIDRFREKLLRGGIMTVTRKTRGDDIAAACGQL 344


>gi|21242760|ref|NP_642342.1| hypothetical protein XAC2016 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108240|gb|AAM36878.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 405

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%)

Query: 5   KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K++L+ + RE LE      +G      R R  Q+ KWI+ R + DF  M+D+ + +R  
Sbjct: 25  RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAK 80

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVG
Sbjct: 81  LHQHAEVLVPNVVFDKPSADGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 137

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L CSFC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+V
Sbjct: 138 CGLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 186

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SL
Sbjct: 187 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 246

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302
           HA ++ LR  LVP+N+KYP+  L+++C  Y   S  R  +TFEY ++KGIND P  A  L
Sbjct: 247 HAANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 306

Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  R
Sbjct: 307 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 366

Query: 355 GLDILAACGQLK 366
           G DI AACGQLK
Sbjct: 367 GDDIDAACGQLK 378


>gi|262276957|ref|ZP_06054750.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114]
 gi|262224060|gb|EEY74519.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114]
          Length = 357

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/348 (43%), Positives = 223/348 (64%), Gaps = 18/348 (5%)

Query: 24  IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD 83
             + ++   MR +Q+WK+ Y +G  D    S+++Q +R  L +  +   P+I ++++S D
Sbjct: 20  FNLDKKKSSMRANQVWKFYYQKGYSDPNLFSNLTQSLRDELLKIVNFSRPKIKNKQVSKD 79

Query: 84  GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
           GT KWLL    + +     +ETVYIP ++  TLC+SSQVGC+L C FC+TG Q LV+NL+
Sbjct: 80  GTIKWLLELNDKNL-----VETVYIPSETHSTLCISSQVGCTLNCKFCHTGIQPLVKNLS 134

Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
           + EI+ Q+L+A+  L D+               +KI+NIV MGMGEP  NF+N+KKS+ I
Sbjct: 135 SNEIISQILIAKDELNDWKE------------QKKINNIVYMGMGEPFYNFENIKKSVEI 182

Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263
             D  GL+FS ++IT+STSG  PNI +   EIG  LA+SLHA +N++RN ++PIN+KY +
Sbjct: 183 LKDENGLNFSNKKITVSTSGISPNIKKAANEIGTYLALSLHAPNNEIRNEIMPINKKYNI 242

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
           E +I+ C  Y    N  +I  EYV+LK +ND+ + A  L KI+   P K+NLI FNPWPG
Sbjct: 243 ENIIEHCSQYAK-ENGEKIFIEYVLLKDVNDTEQCAKELSKIMSQFPCKLNLIQFNPWPG 301

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
            +Y  + ++    F E IK++G+   +R  RG DIL ACGQLK+ S+R
Sbjct: 302 VKYKTATKEQTSKFIEIIKKNGHVVTLRKSRGDDILGACGQLKTASER 349


>gi|296314505|ref|ZP_06864446.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768]
 gi|296838812|gb|EFH22750.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768]
          Length = 364

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 156/333 (46%), Positives = 217/333 (65%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G ++F  M+D+++ +RH LN+  SI  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQASIEIPKLMMSQESSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ ACR 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACRR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND  + A  LI+++K +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGINDRAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSSNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|325927620|ref|ZP_08188849.1| 23S rRNA m(2)A-2503 methyltransferase family [Xanthomonas perforans
           91-118]
 gi|325541987|gb|EGD13500.1| 23S rRNA m(2)A-2503 methyltransferase family [Xanthomonas perforans
           91-118]
          Length = 401

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%)

Query: 5   KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K++L+ + RE LE      +G      R R  Q+ KWI+ R + DF  M+D+ + +R  
Sbjct: 21  RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAK 76

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVG
Sbjct: 77  LHQHAEVLVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVG 133

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+V
Sbjct: 134 CGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 182

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SL
Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 242

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302
           HA ++ LR  LVP+N+KYP+  L+++C  Y   S  R  +TFEY ++KGIND P  A  L
Sbjct: 243 HAANDTLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 302

Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  R
Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 362

Query: 355 GLDILAACGQLK 366
           G DI AACGQLK
Sbjct: 363 GDDIDAACGQLK 374


>gi|325919431|ref|ZP_08181457.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas gardneri ATCC
           19865]
 gi|325550097|gb|EGD20925.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas gardneri ATCC
           19865]
          Length = 401

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/373 (43%), Positives = 227/373 (60%), Gaps = 28/373 (7%)

Query: 4   LKKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
           L+K++L+ + RE LE      +G      R R  Q+ KWI+ R + DF  M+D+ + +R 
Sbjct: 20  LRKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRA 75

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L+QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQV
Sbjct: 76  KLHQHAEVLVPTVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQV 132

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+
Sbjct: 133 GCGLNCTFCSTATQGFNRNLTTAEIVGQVWVAARHLGN-----------VPHQQRRLTNV 181

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+S
Sbjct: 182 VMMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           LHA ++ LR  LVP+N+KYP+  L+++C R+  G      +TFEY ++KGIND P  A  
Sbjct: 242 LHAANDALRESLVPLNKKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQ 301

Query: 302 LIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           L ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  
Sbjct: 302 LARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRT 361

Query: 354 RGLDILAACGQLK 366
           RG DI AACGQLK
Sbjct: 362 RGDDIDAACGQLK 374


>gi|156502452|ref|YP_001428517.1| radical SAM enzyme, Cfr family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|205829764|sp|A7NC58|RLMN_FRATF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|156253055|gb|ABU61561.1| radical SAM enzyme, Cfr family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 370

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 158/362 (43%), Positives = 227/362 (62%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++ +E+  + IG  + H R    Q++KWI+ +G+ DF  M+D+ + +RH L 
Sbjct: 5   KVNLLGLNQKAIEDFFISIGKKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  P++V  K S DGT KWL+      +GG   +ETV+IPE+ RGTLCVSSQ+GC+
Sbjct: 61  DKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQIGCT 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVMM
Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVMM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLH 
Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHT 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+ +
Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVAL 284

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           LK   +PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AACG
Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344

Query: 364 QL 365
           QL
Sbjct: 345 QL 346


>gi|89256367|ref|YP_513729.1| radical SAM superfamily protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314812|ref|YP_763535.1| Fe-S-cluster oxidoreductase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010712|ref|ZP_02275643.1| probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367703|ref|ZP_04983724.1| radical SAM superfamily protein; probable Fe-S-cluster
           oxidoreductase [Francisella tularensis subsp. holarctica
           257]
 gi|122325172|sp|Q0BLY6|RLMN_FRATO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|122999743|sp|Q2A3H3|RLMN_FRATH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|89144198|emb|CAJ79467.1| Radical SAM superfamily protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129711|gb|ABI82898.1| probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253514|gb|EBA52608.1| radical SAM superfamily protein; probable Fe-S-cluster
           oxidoreductase [Francisella tularensis subsp. holarctica
           257]
          Length = 370

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 158/362 (43%), Positives = 227/362 (62%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++ +E+  + IG  + H R    Q++KWI+ +G+ DF  M+D+ + +RH L 
Sbjct: 5   KVNLLGLNQKAIEDFFISIGKKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  P++V  K S DGT KWL+      +GG   +ETV+IPE+ RGTLCVSSQ+GC+
Sbjct: 61  DKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQIGCT 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVMM
Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVMM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLH 
Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHT 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+ +
Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVAL 284

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           LK   +PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AACG
Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344

Query: 364 QL 365
           QL
Sbjct: 345 QL 346


>gi|270156690|ref|ZP_06185347.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
 gi|289164863|ref|YP_003455001.1| Fe-S containing enzyme [Legionella longbeachae NSW150]
 gi|269988715|gb|EEZ94969.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
 gi|288858036|emb|CBJ11896.1| putative Fe-S containing enzyme [Legionella longbeachae NSW150]
          Length = 376

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/333 (49%), Positives = 212/333 (63%), Gaps = 17/333 (5%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  QI +WI+  G+ DF  M+++ + +R  L+Q   I  PEI+  + S DGT KWLL+  
Sbjct: 29  RAQQIIQWIHQAGLTDFAKMTNLGKTLREKLSQLSCIKLPEIIACQKSNDGTHKWLLKLE 88

Query: 94  -ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
              CI      ETV+IPE +RGTLCVSSQVGC+L CSFC T  Q   RNLT  EI+ QV 
Sbjct: 89  CGNCI------ETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLTTAEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           LA   L    G  D          ++++N+VMMGMGEPL NFDNV  ++ I  D      
Sbjct: 143 LAVRELSQSQGNHD----------KRVTNVVMMGMGEPLLNFDNVVSAMDIMMDDFAYGL 192

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           SKRR+TLSTSG +P++ R+ E   V LA+SLHA +++LRN LVPIN+KYPL  L+  C+ 
Sbjct: 193 SKRRVTLSTSGVLPDLERLREVSPVALAVSLHAPNDELRNELVPINKKYPLAQLMALCKI 252

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y      R++TFEYVMLKG+ND P  A+ LIK+L+ IPAK+NLIPFNP+P  +Y  S Q+
Sbjct: 253 YFKNEPRRKVTFEYVMLKGVNDQPEHAIQLIKLLRNIPAKVNLIPFNPFPMTQYERSSQE 312

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F E +   G ++  R  RG DI AACGQL
Sbjct: 313 TIDAFREKLMAHGINTITRKTRGDDIDAACGQL 345


>gi|294625018|ref|ZP_06703668.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600693|gb|EFF44780.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 405

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%)

Query: 5   KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K++L+ + RE LE      +G      R R  Q+ KWI+ R + DF  M+D+ + +R  
Sbjct: 25  RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAK 80

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVG
Sbjct: 81  LHQHAEVLVPNVVFDKPSADGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 137

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+V
Sbjct: 138 CGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 186

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SL
Sbjct: 187 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 246

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302
           HA ++ LR  LVP+N+KYP+  L+++C  Y   S  R  +TFEY ++KGIND P  A  L
Sbjct: 247 HAANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 306

Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  R
Sbjct: 307 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 366

Query: 355 GLDILAACGQLK 366
           G DI AACGQLK
Sbjct: 367 GDDIDAACGQLK 378


>gi|78047623|ref|YP_363798.1| radical SAM superfamily protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036053|emb|CAJ23744.1| radical SAM superfamily protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 405

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%)

Query: 5   KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K++L+ + RE LE      +G      R R  Q+ KWI+ R + DF  M+D+ + +R  
Sbjct: 25  RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLCKALRAK 80

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVG
Sbjct: 81  LHQHAEVLVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVG 137

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+V
Sbjct: 138 CGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 186

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SL
Sbjct: 187 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 246

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302
           HA ++ LR  LVP+N+KYP+  L+++C  Y   S  R  +TFEY ++KGIND P  A  L
Sbjct: 247 HAANDTLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 306

Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  R
Sbjct: 307 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 366

Query: 355 GLDILAACGQLK 366
           G DI AACGQLK
Sbjct: 367 GDDIDAACGQLK 378


>gi|261401249|ref|ZP_05987374.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
 gi|269208732|gb|EEZ75187.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
          Length = 364

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 156/333 (46%), Positives = 217/333 (65%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G ++F  M+D+++ +RH LN+  +I  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLNEQANIGIPKLMMSQESSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  SLSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTSLSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+KYPL+ L+ ACR 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACRR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND  + A  LI ++K +P K NLIPFNP+P   Y  S ++
Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHAHELINLVKDVPCKFNLIPFNPFPNSGYERSSKE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFKDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|205829948|sp|Q3BTW5|RLMN_XANC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 401

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%)

Query: 5   KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K++L+ + RE LE      +G      R R  Q+ KWI+ R + DF  M+D+ + +R  
Sbjct: 21  RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLCKALRAK 76

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVG
Sbjct: 77  LHQHAEVLVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVG 133

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+V
Sbjct: 134 CGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 182

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SL
Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 242

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302
           HA ++ LR  LVP+N+KYP+  L+++C  Y   S  R  +TFEY ++KGIND P  A  L
Sbjct: 243 HAANDTLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 302

Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  R
Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 362

Query: 355 GLDILAACGQLK 366
           G DI AACGQLK
Sbjct: 363 GDDIDAACGQLK 374


>gi|167627914|ref|YP_001678414.1| radical SAM superfamily protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|205829762|sp|B0U083|RLMN_FRAP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|167597915|gb|ABZ87913.1| radical SAM superfamily protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 370

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 158/362 (43%), Positives = 232/362 (64%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++ +E+  + IG  + H R    Q++KWI+ +G+ DF  M+D+ + +R+ L 
Sbjct: 5   KINLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDSMTDLGKNLRNKLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++  I+ P++V  K S DGT KWL+      +GG   +ETV+IPE+ RGTLCVSSQVGC+
Sbjct: 61  ENAEIVIPKVVFNKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQVGCT 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL++ E++ Q+ +A   L    G  D            ++NIVMM
Sbjct: 115 LNCSFCSTGKQGFNRNLSSAEVISQLWIAARTLSKNNGEHDFS----------VTNIVMM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLHA
Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  LI++
Sbjct: 225 PTDSLRNEIVPINKKYNIDELLEACKLYAEKGPHKHITFEYTLMEEVNDNLSDAEQLIEL 284

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           L+   +PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AACG
Sbjct: 285 LRSREVPAKINLIPFNPYPGTPYRKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344

Query: 364 QL 365
           QL
Sbjct: 345 QL 346


>gi|90021078|ref|YP_526905.1| Crp/FNR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|123090598|sp|Q21KT6|RLMN_SACD2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|89950678|gb|ABD80693.1| transcriptional regulator, Crp/Fnr family [Saccharophagus degradans
           2-40]
          Length = 398

 Score =  309 bits (792), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 170/364 (46%), Positives = 227/364 (62%), Gaps = 25/364 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + +LE     +G      R R +Q+ KWI+  G+ DF+ M++IS+ +R  L+
Sbjct: 11  KVNLMGLSQAKLEAFFDSLG----EKRFRATQVLKWIHQMGVTDFEQMTNISKPLRDKLS 66

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q    + PE+V++  S DGTRK+L+R     +GG   +ETVYIP+  RGTLCVSSQVGCS
Sbjct: 67  QVAEAVAPEVVNQWDSSDGTRKFLIR-----VGGGNAVETVYIPDGDRGTLCVSSQVGCS 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNIV 183
           L CSFC TG Q   R+LTA EI+ QV  A      F             VG  RKI+N+V
Sbjct: 122 LDCSFCATGKQGFNRDLTAAEIIGQVWQAAKSFNQF------------GVGAQRKITNVV 169

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV  S+++         SKRR+TLSTSG VP + ++GE     LAISL
Sbjct: 170 MMGMGEPLLNFDNVVDSMNLMMHDNCYGLSKRRVTLSTSGVVPALDKLGEYTDACLAISL 229

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARR-ITFEYVMLKGINDSPRDALN 301
           HA +N LRN LVPIN+KYP+EML+ + + Y  GL + RR +T EY ++  +ND P  A  
Sbjct: 230 HAPNNALRNELVPINKKYPIEMLLASAKRYIDGLPDVRRKMTIEYTLIDQVNDRPEHAHE 289

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LK IP KINLIPFNP+    Y       +  F + +  +GY++ +RT RG DI AA
Sbjct: 290 LAELLKDIPVKINLIPFNPFNLSNYKRVSNNALRRFQQILIDAGYTTTVRTTRGDDIDAA 349

Query: 362 CGQL 365
           CGQL
Sbjct: 350 CGQL 353


>gi|294666609|ref|ZP_06731848.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603629|gb|EFF47041.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 405

 Score =  309 bits (792), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%)

Query: 5   KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K++L+ + RE LE      +G      R R  Q+ KWI+ R + DF  M+D+ + +R  
Sbjct: 25  RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAK 80

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVG
Sbjct: 81  LHQHAEVLVPNVVFDKPSSDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 137

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+V
Sbjct: 138 CGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 186

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SL
Sbjct: 187 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 246

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302
           HA ++ LR  LVP+N+KYP+  L+++C  Y   S  R  +TFEY ++KGIND P  A  L
Sbjct: 247 HAANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 306

Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  R
Sbjct: 307 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 366

Query: 355 GLDILAACGQLK 366
           G DI AACGQLK
Sbjct: 367 GDDIDAACGQLK 378


>gi|332184101|gb|AEE26355.1| radical SAM superfamily protein [Francisella cf. novicida 3523]
          Length = 370

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 160/362 (44%), Positives = 228/362 (62%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++ +E+  + IG  + H R    Q++KWI+ +G+ DF  M+D+ + +R+ L 
Sbjct: 5   KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRNKLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P++V  K S DGT KWL+      +GG   +ETV+IPE+ RGTLCVSSQVGC+
Sbjct: 61  EKTEITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQVGCT 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVMM
Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLHA
Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LRN +VPIN+KY ++ L+ AC+ Y      + ITFEY +++ IND+  DA  L+ +
Sbjct: 225 PNDMLRNEIVPINKKYNIDELLKACKLYAEKGPHKHITFEYTLMEEINDNLSDAEELVAL 284

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           LK   +PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AACG
Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344

Query: 364 QL 365
           QL
Sbjct: 345 QL 346


>gi|188991676|ref|YP_001903686.1| Radical SAM superfamily protein, probable [Xanthomonas campestris
           pv. campestris str. B100]
 gi|205829934|sp|B0RT51|RLMN_XANCB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|167733436|emb|CAP51637.1| Radical SAM superfamily protein, probable [Xanthomonas campestris
           pv. campestris]
          Length = 401

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 163/373 (43%), Positives = 226/373 (60%), Gaps = 28/373 (7%)

Query: 4   LKKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
           + K++L+ + RE LE      +G      R R  Q+ KWI+ R + DF  M+D+ + +R 
Sbjct: 20  VHKQNLLDLDREGLEHFFADTLG----EARYRAHQMMKWIHHRYVTDFDQMTDLGKALRA 75

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L+QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQV
Sbjct: 76  KLHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQV 132

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+
Sbjct: 133 GCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNV 181

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+S
Sbjct: 182 VMMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLATESDVSLAVS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           LHA ++ LR  LVP+N+KYP+  L+++C R+  G      +TFEY ++KGIND P  A  
Sbjct: 242 LHAANDALRESLVPLNKKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQ 301

Query: 302 LIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           L ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  
Sbjct: 302 LARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRT 361

Query: 354 RGLDILAACGQLK 366
           RG DI AACGQLK
Sbjct: 362 RGDDIDAACGQLK 374


>gi|289670467|ref|ZP_06491542.1| hypothetical protein XcampmN_18763 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 401

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%)

Query: 5   KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K++L+ + RE LE      +G      R R  Q+ KWI+ R + DF  M+D+ + +R  
Sbjct: 21  RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHRRYVTDFDQMTDLGKPLRAK 76

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVG
Sbjct: 77  LHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 133

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+V
Sbjct: 134 CGLNCTFCSTATQGFNRNLTTAEIVGQVWVAARHLGN-----------VPHQQRRLTNVV 182

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SL
Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 242

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302
           HA ++ LR  LVP+N+KYP+  L+++C  Y   S  R  +TFEY ++KGIND P  A  L
Sbjct: 243 HAANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 302

Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  R
Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 362

Query: 355 GLDILAACGQLK 366
           G DI AACGQLK
Sbjct: 363 GDDIDAACGQLK 374


>gi|289666007|ref|ZP_06487588.1| hypothetical protein XcampvN_23775 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 401

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%)

Query: 5   KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K++L+ + RE LE      +G      R R  Q+ KWI+ R + DF  M+D+ + +R  
Sbjct: 21  RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKPLRAK 76

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVG
Sbjct: 77  LHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 133

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+V
Sbjct: 134 CGLNCTFCSTATQGFNRNLTTAEIVGQVWVAARHLGN-----------VPHQQRRLTNVV 182

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SL
Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 242

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302
           HA ++ LR  LVP+N+KYP+  L+++C  Y   S  R  +TFEY ++KGIND P  A  L
Sbjct: 243 HAANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 302

Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  R
Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 362

Query: 355 GLDILAACGQLK 366
           G DI AACGQLK
Sbjct: 363 GDDIDAACGQLK 374


>gi|134301956|ref|YP_001121925.1| radical SAM protein [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|205829767|sp|A4IY03|RLMN_FRATW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|134049733|gb|ABO46804.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 370

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 159/362 (43%), Positives = 228/362 (62%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++ +E+  + IG  + H R    Q++KWI+ +G+ DF  M+D+ + +RH L 
Sbjct: 5   KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P++V  K S DGT KWL+      +GG   +ETV+I E+ RGTLCVSSQVGC+
Sbjct: 61  EKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFILEEGRGTLCVSSQVGCT 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVMM
Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLHA
Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+ +
Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVAL 284

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           LK   +PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AACG
Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344

Query: 364 QL 365
           QL
Sbjct: 345 QL 346


>gi|161870181|ref|YP_001599351.1| hypothetical protein NMCC_1221 [Neisseria meningitidis 053442]
 gi|205829821|sp|A9LZN6|RLMN_NEIM0 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|161595734|gb|ABX73394.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 364

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 155/333 (46%), Positives = 217/333 (65%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G ++F  M+D+++ +RH LN+  SI  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQASIEIPKLMMSQESSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND  + A  LI+++K +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGINDRAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSSNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|241668466|ref|ZP_04756044.1| radical SAM superfamily protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877000|ref|ZP_05249710.1| radical SAM family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843021|gb|EET21435.1| radical SAM family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 370

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 157/362 (43%), Positives = 232/362 (64%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++ +E+  + IG  + H R    Q++KWI+ +G+ DF  M+D+ + +R+ L 
Sbjct: 5   KINLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDSMTDLGKNLRNKLR 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++  I+ P++V  K S DGT KWL+      +GG   +ETV+IPE+ RGTLCVSSQVGC+
Sbjct: 61  ENAEIVIPKVVFNKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQVGCT 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL++ E++ Q+ +A   L    G  D            ++NIVMM
Sbjct: 115 LNCSFCSTGKQGFNRNLSSAEVISQLWIAARTLSKNNGEHDFS----------VTNIVMM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLHA
Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+++
Sbjct: 225 PTDSLRNEIVPINKKYNIDELLEACKLYAEKGPHKHITFEYTLMEEVNDNLSDAEQLVEL 284

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           L+   +PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AACG
Sbjct: 285 LRSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344

Query: 364 QL 365
           QL
Sbjct: 345 QL 346


>gi|313668447|ref|YP_004048731.1| hypothetical protein NLA_11430 [Neisseria lactamica ST-640]
 gi|313005909|emb|CBN87365.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 364

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 155/333 (46%), Positives = 217/333 (65%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G ++F  M+D+++ +RH LN+  +I  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLNEQANIGIPKLMMSQESSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+KYPL+ L+ ACR 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACRR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND  + A  LI ++K +P K NLIPFNP+P   Y  S ++
Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHAHELINLVKDVPCKFNLIPFNPFPNSGYERSSKE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFKDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|21231430|ref|NP_637347.1| hypothetical protein XCC1982 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768516|ref|YP_243278.1| hypothetical protein XC_2202 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|81305512|sp|Q4UUL5|RLMN_XANC8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81794005|sp|Q8P984|RLMN_XANCP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|21113100|gb|AAM41271.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573848|gb|AAY49258.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 401

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 163/373 (43%), Positives = 226/373 (60%), Gaps = 28/373 (7%)

Query: 4   LKKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
           + K++L+ + RE LE      +G      R R  Q+ KWI+ R + DF  M+D+ + +R 
Sbjct: 20  VHKQNLLDLDREGLEHFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRA 75

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L+QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQV
Sbjct: 76  KLHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQV 132

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+
Sbjct: 133 GCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNV 181

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+S
Sbjct: 182 VMMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLATESDVSLAVS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           LHA ++ LR  LVP+N+KYP+  L+++C R+  G      +TFEY ++KGIND P  A  
Sbjct: 242 LHAANDVLRESLVPLNKKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQ 301

Query: 302 LIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           L ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  
Sbjct: 302 LARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRT 361

Query: 354 RGLDILAACGQLK 366
           RG DI AACGQLK
Sbjct: 362 RGDDIDAACGQLK 374


>gi|255021262|ref|ZP_05293311.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
           caldus ATCC 51756]
 gi|254969273|gb|EET26786.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
           caldus ATCC 51756]
          Length = 357

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 170/357 (47%), Positives = 217/357 (60%), Gaps = 26/357 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G+ R  L   L + G P      R SQI +W++ R + DF  MS+IS+ +R  L    
Sbjct: 4   LLGLDRAGLVALLQEWGEPP----FRASQILQWLHQRQVDDFAAMSNISKALRARLMAET 59

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
               PE++ ++++ D TRKWLLR P         IETV+IPE+ RGTLC+SSQVGCSL C
Sbjct: 60  RWDEPEVIADQLARDETRKWLLRLP-----DGNAIETVFIPEEDRGTLCISSQVGCSLAC 114

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
           SFC TG Q L RNL++ EI+ QV +AR  LG                   I+N+V MGMG
Sbjct: 115 SFCATGAQGLNRNLSSHEIVAQVRVARRHLG----------------LDAITNVVFMGMG 158

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EPL N   V   + +  D      S RR+T+ST+G +P + ++G E  V LAISLHA  N
Sbjct: 159 EPLLNLKQVIPVIRLLLDDFAYGLSSRRVTVSTAGVLPGLEQLGRETPVNLAISLHASRN 218

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           DLR+ LVPINR YPL  L+ ACR YP L   RRITFEYVML G+NDS  DA  L+++L+G
Sbjct: 219 DLRDELVPINRHYPLAQLMAACRSYP-LPPRRRITFEYVMLDGVNDSDADARALVRLLRG 277

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +PA +NLIPFNP+PG  Y  S    I  F E +  +G  +  R PRG DI AACGQL
Sbjct: 278 LPALVNLIPFNPFPGSPYRRSSLARIDAFREIVLSAGIMTVTRRPRGDDIAAACGQL 334


>gi|53802993|ref|YP_115280.1| hypothetical protein MCA2887 [Methylococcus capsulatus str. Bath]
 gi|81680833|sp|Q603C0|RLMN_METCA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|53756754|gb|AAU91045.1| conserved hypothetical protein TIGR00048 [Methylococcus capsulatus
           str. Bath]
          Length = 366

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 160/358 (44%), Positives = 221/358 (61%), Gaps = 24/358 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+ + RE +E   +++G        R SQ+ +WI+ RG+ DF  M+++S+ +R  L   
Sbjct: 15  NLLDLDREGMEAFFVRLG----EKPFRASQLLQWIHQRGVTDFGLMTNLSKTLRSRLEAV 70

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             I  PE+V E+ S DGTRKW+L+     +     +ETV IP++ R TLCVSSQVGCSL 
Sbjct: 71  SEIRPPELVLEQRSADGTRKWVLQ-----VDAVNRVETVLIPDEGRNTLCVSSQVGCSLE 125

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC T  Q   RNLT  EI+ Q+ +A+  L +                ++ISN+V+MGM
Sbjct: 126 CSFCSTARQGFNRNLTTAEIIGQLWVAQHRLDE---------------EQRISNVVLMGM 170

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF NV  +  +  D      SKRR+TLSTSG VP + R+ E   + LA+SLHA  
Sbjct: 171 GEPLLNFGNVVAATRLMMDDFAYGLSKRRVTLSTSGIVPALDRLAEVSDISLAVSLHAPD 230

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           + LRN LVPINRKYP+  L+ AC+ Y G  N R++TFEYVML G+ND P  A  L+++L 
Sbjct: 231 DTLRNELVPINRKYPIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARALVRLLS 290

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +P+K+NLIPFNP+P   Y CS  + I  F++ ++ +G  +  R  RG DI AACGQL
Sbjct: 291 HVPSKVNLIPFNPFPNSAYRCSHPETIARFAQTLQDAGLITTTRKTRGRDIDAACGQL 348


>gi|319786998|ref|YP_004146473.1| radical SAM enzyme, Cfr family [Pseudoxanthomonas suwonensis 11-1]
 gi|317465510|gb|ADV27242.1| radical SAM enzyme, Cfr family [Pseudoxanthomonas suwonensis 11-1]
          Length = 418

 Score =  308 bits (790), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 163/370 (44%), Positives = 224/370 (60%), Gaps = 26/370 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L+ + RE LE    +    +R+   R  Q+ KWI+ R + DF  M+D+ + +R  L+
Sbjct: 35  KQNLLELDREGLERFFEETLGEKRY---RAHQVMKWIHHRYVTDFDQMTDLGKALRAKLH 91

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            H  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVGC 
Sbjct: 92  AHAEVVVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVGCG 148

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VMM
Sbjct: 149 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVMM 197

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLHA
Sbjct: 198 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSVESDVSLAVSLHA 257

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLIK 304
            ++ LR  LVP+NRKYP+  L+ +C  Y   +  R  +TFEY ++KG+ND P  A  L +
Sbjct: 258 PNDALRETLVPLNRKYPIAELMASCARYLRANKKRESVTFEYTLMKGVNDQPEHARQLAR 317

Query: 305 ILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
           +++            K+NLIPFNP+PG  Y  SD+  I  F + +  S   + +R  RG 
Sbjct: 318 LMRQFDNAVQARDSGKVNLIPFNPFPGTRYERSDEATIRAFQKILLDSQVLTMVRRTRGD 377

Query: 357 DILAACGQLK 366
           DI AACGQLK
Sbjct: 378 DIDAACGQLK 387


>gi|121635020|ref|YP_975265.1| hypothetical protein NMC1245 [Neisseria meningitidis FAM18]
 gi|254805109|ref|YP_003083330.1| hypothetical protein NMO_1149 [Neisseria meningitidis alpha14]
 gi|205829823|sp|A1KUD6|RLMN_NEIMF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120866726|emb|CAM10479.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
 gi|254668651|emb|CBA06309.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
 gi|325132491|gb|EGC55184.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M6190]
 gi|325138265|gb|EGC60834.1| radical SAM enzyme, Cfr family [Neisseria meningitidis ES14902]
 gi|325142519|gb|EGC64920.1| radical SAM enzyme, Cfr family [Neisseria meningitidis 961-5945]
 gi|325198460|gb|ADY93916.1| radical SAM enzyme, Cfr family [Neisseria meningitidis G2136]
          Length = 364

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 154/333 (46%), Positives = 216/333 (64%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G ++F  M+D+++ +RH LN+   I  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND  + A  LI+++K +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSSNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|190574019|ref|YP_001971864.1| putative SAM methylase protein [Stenotrophomonas maltophilia K279a]
 gi|254524361|ref|ZP_05136416.1| radical SAM enzyme, Cfr family [Stenotrophomonas sp. SKA14]
 gi|205829904|sp|B2FNQ6|RLMN_STRMK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|190011941|emb|CAQ45562.1| putative SAM methylase protein [Stenotrophomonas maltophilia K279a]
 gi|219721952|gb|EED40477.1| radical SAM enzyme, Cfr family [Stenotrophomonas sp. SKA14]
          Length = 401

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 163/371 (43%), Positives = 228/371 (61%), Gaps = 28/371 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L+ + R  LE+  +++   ++    R  Q+ KWI+ R + DF  M+D+ + +R  L 
Sbjct: 22  KQNLLDLDRAGLEKFFVEVLGEKK---FRAHQVMKWIHHRYVTDFDEMTDLGKVLRAKLQ 78

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            H  ++ P IV +K S DGT KWLL   A  + G   IETVYIP+K+RGTLCVSSQVGC 
Sbjct: 79  AHAEVLVPNIVFDKPSADGTHKWLL---AMGVDGKNAIETVYIPDKTRGTLCVSSQVGCG 135

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VMM
Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQMRRLTNVVMM 184

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSAESDVSLAVSLHA 244

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303
            ++ LR  LVP+N+KYP+  L+ +C  Y   +N RR  +TFEY ++KGIND P  A  L 
Sbjct: 245 PNDALRETLVPLNKKYPIAELMASCARYL-RANKRRESVTFEYTLMKGINDKPEHARELA 303

Query: 304 KILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           ++++            K+NLIPFNP+PG  Y  S++  I  F + +  S   + +R  RG
Sbjct: 304 RLMRQFDNAVQAKDSGKVNLIPFNPFPGTRYERSEEAHIRAFQKILLDSNVLTMVRRTRG 363

Query: 356 LDILAACGQLK 366
            DI AACGQLK
Sbjct: 364 DDIDAACGQLK 374


>gi|325205918|gb|ADZ01371.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M04-240196]
          Length = 364

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 154/333 (46%), Positives = 216/333 (64%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G ++F  M+D+++ +RH LN+   I  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND  + A  LI+++K +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSSNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|256823058|ref|YP_003147021.1| radical SAM enzyme, Cfr family [Kangiella koreensis DSM 16069]
 gi|256796597|gb|ACV27253.1| radical SAM enzyme, Cfr family [Kangiella koreensis DSM 16069]
          Length = 374

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 172/377 (45%), Positives = 229/377 (60%), Gaps = 24/377 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E  +++G        R  Q+ KW++  G+ DF  M++IS+  R  L
Sbjct: 4   EKTNLLNLTRDEMVEFFVELG----EKPFRAQQVMKWVHQFGVEDFDEMTNISKVCRERL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE++  + S DGT KW L+ P     G   +E V+IPE+ RGTLCVSSQVGC
Sbjct: 60  KDVAEIKGPEVLSVQESKDGTVKWALKIP-----GGQAVEMVFIPERHRGTLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           +L C+FC TG Q   RNLT  EI+ QV L AR L G     E           R ++N+V
Sbjct: 115 ALECTFCSTGYQGFNRNLTTAEIIGQVWLAARYLHGKHKSDE-----------RVVTNVV 163

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFD V KS+ +  D +    SKRR+TLSTSG VP + R+ +E+ V LAISL
Sbjct: 164 MMGMGEPLANFDPVVKSMQLMMDDLAYGLSKRRVTLSTSGMVPQLDRLIDEVDVALAISL 223

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-ARRITFEYVMLKGINDSPRDALNL 302
           HA ++ LR++LVPIN+KYP++ L+ +   Y   SN AR+ T EYVMLK +ND+ + A  L
Sbjct: 224 HAPNDALRDVLVPINKKYPIKELMASVHRYLDRSNAARKATIEYVMLKDVNDTLQHAKEL 283

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIPFNP+P   Y  S Q+ I  FS+ + + GY    R  RG DI AAC
Sbjct: 284 AELLKNTPCKINLIPFNPFPQANYQTSTQEAIDLFSDYLIKKGYVVVTRRTRGDDIDAAC 343

Query: 363 GQLKSLSKRIPKVPRQE 379
           GQL    K   K  RQE
Sbjct: 344 GQLA--GKINDKTKRQE 358


>gi|307543979|ref|YP_003896458.1| hypothetical protein HELO_1390 [Halomonas elongata DSM 2581]
 gi|307216003|emb|CBV41273.1| K06941 [Halomonas elongata DSM 2581]
          Length = 378

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 164/364 (45%), Positives = 228/364 (62%), Gaps = 22/364 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ +L+GM REE+E   L IG      + R +Q+ KWI+  G  DF  M+++S+ +R  L
Sbjct: 11  QRPNLLGMTREEMEAFFLSIG----EKKFRAAQVMKWIHQEGCSDFASMTNLSKALRAQL 66

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQV 122
           ++   I  P +V E  S DGTRKW+L      +     +ETV IP  +  R TLCVSSQV
Sbjct: 67  SEVAEIRGPSVVYEGTSSDGTRKWVLE-----VEDGSYVETVLIPADNGKRRTLCVSSQV 121

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GCSL CSFC TG Q   RNLTA EI+ QV +A +  G  P  +        +  R ++N+
Sbjct: 122 GCSLDCSFCSTGKQGFQRNLTAAEIIGQVWVASNSFG--PRHD--------TANRPVTNV 171

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N+DNV  ++ +  D  G S SKRR+TLSTSG VP + R+G+E+ V LAIS
Sbjct: 172 VMMGMGEPLLNYDNVVPAMKLMLDDNGYSLSKRRVTLSTSGVVPMLDRLGDELDVSLAIS 231

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALN 301
           LHA +++LR+ LVP+NRKY +  L+DAC+ Y     + R +T EY ++K +ND    A  
Sbjct: 232 LHAANDELRSELVPLNRKYNIRTLLDACQRYLAKCDDTRMVTIEYTLIKDVNDQQEHARQ 291

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++L+ +P+KINLIPFNP+P   Y    +  +  F + +   GY++PIR+ RG DI AA
Sbjct: 292 LAELLQELPSKINLIPFNPFPHSGYETPSRNQVKRFQQWLADLGYTAPIRSTRGDDIDAA 351

Query: 362 CGQL 365
           CGQL
Sbjct: 352 CGQL 355


>gi|255321140|ref|ZP_05362306.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
 gi|262380171|ref|ZP_06073326.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           radioresistens SH164]
 gi|255301694|gb|EET80945.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
 gi|262298365|gb|EEY86279.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           radioresistens SH164]
          Length = 411

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 172/371 (46%), Positives = 228/371 (61%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           LKK +L+GM R ELE    K+G      + R  Q+ KW++   + DF  M++IS ++R  
Sbjct: 28  LKKVNLLGMSRAELENFFEKLG----EKKFRAGQVMKWMHQYFVTDFAEMTNISGKLRAK 83

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVS 119
           L Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +     R TLC+S
Sbjct: 84  LEQLCEIKAPEVVHRHYSKDGTRKWVFRVGD---GAGSLVETVLIPAEDKTGLRKTLCIS 140

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRK 178
           SQVGC+L CSFC TG Q   R+LT +EI+ Q+ +A +S + D P  E           R 
Sbjct: 141 SQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWVANQSYMEDVPVAERT---------RS 191

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           ++N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V 
Sbjct: 192 VTNVVMMGMGEPLLNYDAVLSSMYIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVA 251

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGIND 294
           LAISLHA +++LRN LVPIN+KYPL  LI AC+ Y    G  +AR+ +T EYVML G+ND
Sbjct: 252 LAISLHAPNDELRNELVPINKKYPLAQLIAACQRYINKDGNESARKHVTIEYVMLDGVND 311

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           S   A  +I++LK +P+KINLIPFNP+P   Y  S +  I+ F + +  +G+   IR  R
Sbjct: 312 SLEHAQQMIRLLKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKALSDAGFVCTIRQTR 371

Query: 355 GLDILAACGQL 365
           G DI AACGQL
Sbjct: 372 GDDIDAACGQL 382


>gi|194365435|ref|YP_002028045.1| radical SAM enzyme, Cfr family [Stenotrophomonas maltophilia
           R551-3]
 gi|254807214|sp|B4SSW3|RLMN_STRM5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|194348239|gb|ACF51362.1| radical SAM enzyme, Cfr family [Stenotrophomonas maltophilia
           R551-3]
          Length = 401

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 162/371 (43%), Positives = 229/371 (61%), Gaps = 28/371 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L+ + R  LE+  +++   ++    R  Q+ KWI+ R + +F  M+D+ + +R  L 
Sbjct: 22  KQNLLDLDRAGLEKFFVEVLGEKK---FRAHQVMKWIHHRYVTEFDEMTDLGKVLRAKLQ 78

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +H  ++ P IV +K S DGT KWLL   A  + G   IETVYIP+K+RGTLCVSSQVGC 
Sbjct: 79  EHAEVLVPNIVFDKPSADGTHKWLL---AMGVDGKNAIETVYIPDKTRGTLCVSSQVGCG 135

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VMM
Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWIAARHLGN-----------VPHQMRRLTNVVMM 184

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSTESDVSLAVSLHA 244

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303
            ++ LR  LVP+N+KYP+  L+ +C  Y   +N RR  +TFEY ++KGIND P  A  L 
Sbjct: 245 PNDALRETLVPLNKKYPIAELMASCARYL-RANKRRESVTFEYTLMKGINDKPEHARELA 303

Query: 304 KILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           ++++            K+NLIPFNP+PG  Y  S++  I  F + +  S   + +R  RG
Sbjct: 304 RLMRQFDNAVQAKDSGKVNLIPFNPFPGTRYERSEEAHIRAFQKILLDSNVLTMVRRTRG 363

Query: 356 LDILAACGQLK 366
            DI AACGQLK
Sbjct: 364 DDIDAACGQLK 374


>gi|255292044|dbj|BAH90525.1| conserved hypothetical protein [uncultured bacterium]
 gi|255292512|dbj|BAH89627.1| radical SAM enzyme [uncultured bacterium]
 gi|255293032|dbj|BAH90127.1| radical SAM enzyme [uncultured bacterium]
          Length = 364

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/360 (44%), Positives = 212/360 (58%), Gaps = 20/360 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R  LE     +G        R  Q+ +W++  G  DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLDRPGLEGLFASLG----EKPFRAGQVLQWLHAHGCEDFAAMTNLSKALRERLA 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q   I  P++  + ++ DGTRKWL + P     G   IETVYIPE  RGTLCVSSQVGC 
Sbjct: 63  QESQIAAPQVQADHLASDGTRKWLFQLP-----GGSAIETVYIPETRRGTLCVSSQVGCQ 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC T  Q   RNL  +EI+ Q+  A  LL   P  E           + I+N+V M
Sbjct: 118 LNCSFCQTARQGFNRNLGVDEIVGQIWAASRLLPPHPARE-----------KPITNVVFM 166

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +    S RR+T+STSG VP I R+ EE  V LA+SLHA
Sbjct: 167 GMGEPLLNFDNVVAAIRVMLDDLAYGLSWRRVTVSTSGVVPMIDRLREECPVALAVSLHA 226

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             + LR  LVP+NR+YP+++L+DACR Y      RRITFEY +L G+ND P  A  L K+
Sbjct: 227 PDDALRAELVPLNRRYPIDVLLDACRRYVAGDQRRRITFEYTLLAGVNDHPGQAKALAKL 286

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L  +P+K+NLIP+NP  G  Y  S  + +  F + + R G  + +R  RG DI  ACGQL
Sbjct: 287 LARVPSKVNLIPYNPVAGLPYATSPPQAVAQFRDELLRHGLVATVRKTRGDDIAGACGQL 346


>gi|56708143|ref|YP_170039.1| radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670614|ref|YP_667171.1| radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457239|ref|ZP_03665712.1| radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370628|ref|ZP_04986633.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874946|ref|ZP_05247656.1| radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|81597446|sp|Q5NG03|RLMN_FRATT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123063459|sp|Q14HF5|RLMN_FRAT1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|54112615|gb|AAV28941.1| NT02FT0031 [synthetic construct]
 gi|56604635|emb|CAG45691.1| Radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320947|emb|CAL09074.1| Radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568871|gb|EDN34525.1| hypothetical protein FTBG_00416 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840945|gb|EET19381.1| radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159349|gb|ADA78740.1| Radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 370

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 158/362 (43%), Positives = 227/362 (62%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++ +E+  + IG  + H R    Q++KWI+ +G+ DF  M+D+ + +RH L 
Sbjct: 5   KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P++V  K S DGT KWL+      +GG   +ETV+I  + RGTLCVSSQVGC+
Sbjct: 61  EKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFILAEGRGTLCVSSQVGCT 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVMM
Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLHA
Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+ +
Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSDAEELVAL 284

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           LK   +PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AACG
Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344

Query: 364 QL 365
           QL
Sbjct: 345 QL 346


>gi|304387385|ref|ZP_07369577.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091]
 gi|304338636|gb|EFM04754.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091]
          Length = 364

 Score =  306 bits (783), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G ++F  M+D+++ +RH LN+   I  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQESSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND  + A  LI+++  +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSRYERSSNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|62260668|gb|AAX77923.1| unknown protein [synthetic construct]
          Length = 405

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 158/362 (43%), Positives = 227/362 (62%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++ +E+  + IG  + H R    Q++KWI+ +G+ DF  M+D+ + +RH L 
Sbjct: 31  KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P++V  K S DGT KWL+      +GG   +ETV+I  + RGTLCVSSQVGC+
Sbjct: 87  EKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFILAEGRGTLCVSSQVGCT 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVMM
Sbjct: 141 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLHA
Sbjct: 191 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+ +
Sbjct: 251 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSDAEELVAL 310

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           LK   +PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AACG
Sbjct: 311 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 370

Query: 364 QL 365
           QL
Sbjct: 371 QL 372


>gi|59801026|ref|YP_207738.1| hypothetical protein NGO0596 [Neisseria gonorrhoeae FA 1090]
 gi|194098883|ref|YP_002001947.1| hypothetical protein NGK_1322 [Neisseria gonorrhoeae NCCP11945]
 gi|239999168|ref|ZP_04719092.1| hypothetical protein Ngon3_06775 [Neisseria gonorrhoeae 35/02]
 gi|240013924|ref|ZP_04720837.1| hypothetical protein NgonD_04618 [Neisseria gonorrhoeae DGI18]
 gi|240016366|ref|ZP_04722906.1| hypothetical protein NgonFA_04214 [Neisseria gonorrhoeae FA6140]
 gi|240080485|ref|ZP_04725028.1| hypothetical protein NgonF_04112 [Neisseria gonorrhoeae FA19]
 gi|240113147|ref|ZP_04727637.1| hypothetical protein NgonM_06171 [Neisseria gonorrhoeae MS11]
 gi|240118201|ref|ZP_04732263.1| hypothetical protein NgonPID_07036 [Neisseria gonorrhoeae PID1]
 gi|240121493|ref|ZP_04734455.1| hypothetical protein NgonPI_06948 [Neisseria gonorrhoeae PID24-1]
 gi|240123749|ref|ZP_04736705.1| hypothetical protein NgonP_07399 [Neisseria gonorrhoeae PID332]
 gi|240125940|ref|ZP_04738826.1| hypothetical protein NgonSK_06937 [Neisseria gonorrhoeae SK-92-679]
 gi|240128452|ref|ZP_04741113.1| hypothetical protein NgonS_07451 [Neisseria gonorrhoeae SK-93-1035]
 gi|254493940|ref|ZP_05107111.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268594999|ref|ZP_06129166.1| ribosomal RNA large subunit methyltransferase N [Neisseria
           gonorrhoeae 35/02]
 gi|268596621|ref|ZP_06130788.1| ribosomal RNA large subunit methyltransferase N [Neisseria
           gonorrhoeae FA19]
 gi|268599227|ref|ZP_06133394.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268603913|ref|ZP_06138080.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682376|ref|ZP_06149238.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268684534|ref|ZP_06151396.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268686844|ref|ZP_06153706.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|293398890|ref|ZP_06643055.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
 gi|75356171|sp|Q5F911|RLMN_NEIG1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807190|sp|B4RMG2|RLMN_NEIG2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|59717921|gb|AAW89326.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193934173|gb|ACF29997.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512980|gb|EEH62325.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548388|gb|EEZ43806.1| ribosomal RNA large subunit methyltransferase N [Neisseria
           gonorrhoeae 35/02]
 gi|268550409|gb|EEZ45428.1| ribosomal RNA large subunit methyltransferase N [Neisseria
           gonorrhoeae FA19]
 gi|268583358|gb|EEZ48034.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268588044|gb|EEZ52720.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622660|gb|EEZ55060.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268624818|gb|EEZ57218.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627128|gb|EEZ59528.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291610304|gb|EFF39414.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
 gi|317164455|gb|ADV07996.1| hypothetical protein NGTW08_1028 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 364

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 216/333 (64%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G ++F  M+D+++ +RH LN+  SI  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQASIEIPKLMMSQESSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML G+ND  + A  LI+++K +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGVNDKAQHAYELIELVKDVPCKFNLIPFNPFPNSGYERSSNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++ +   +R  RG DI AACGQL
Sbjct: 309 NIRIFRDILQQAEFVVTVRKTRGDDIDAACGQL 341


>gi|309379239|emb|CBX22196.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 364

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 216/333 (64%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G ++F  M+D+++ +RH LN+  +I  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLNEQANIGIPKLMMSQESSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDYGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG V  + R+ + + V LA+SLHA ++++R+ +VP+N+KYPL+ L+ ACR 
Sbjct: 189 SRRRVTVSTSGMVSQMDRLRDVMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACRR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML G+ND  + A  LI ++K +P K NLIPFNP+P   Y  S ++
Sbjct: 249 YLVKAPRDFITFEYVMLDGVNDKAQHAHELINLVKDVPCKFNLIPFNPFPNSGYERSSKE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFKDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|218768330|ref|YP_002342842.1| hypothetical protein NMA1522 [Neisseria meningitidis Z2491]
 gi|205829822|sp|A1ISB3|RLMN_NEIMA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|121052338|emb|CAM08669.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
 gi|261392411|emb|CAX49953.1| conserved hypothetical protein [Neisseria meningitidis 8013]
 gi|319410575|emb|CBY90944.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
 gi|325134450|gb|EGC57095.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M13399]
          Length = 364

 Score =  305 bits (781), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G ++F  M+D+++ +RH LN+   I  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND  + A  LI+++  +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|15677174|ref|NP_274327.1| hypothetical protein NMB1308 [Neisseria meningitidis MC58]
 gi|81784539|sp|Q9JZ42|RLMN_NEIMB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|7226549|gb|AAF41683.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|316984107|gb|EFV63085.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
 gi|325130328|gb|EGC53094.1| radical SAM enzyme, Cfr family [Neisseria meningitidis OX99.30304]
 gi|325136188|gb|EGC58796.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M0579]
 gi|325140467|gb|EGC62988.1| radical SAM enzyme, Cfr family [Neisseria meningitidis CU385]
 gi|325200066|gb|ADY95521.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
 gi|325201981|gb|ADY97435.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240149]
 gi|325208268|gb|ADZ03720.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NZ-05/33]
          Length = 364

 Score =  305 bits (781), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G ++F  M+D+++ +RH LN+   I  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND  + A  LI+++  +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|254670500|emb|CBA06240.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|325128395|gb|EGC51278.1| radical SAM enzyme, Cfr family [Neisseria meningitidis N1568]
          Length = 364

 Score =  305 bits (781), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G ++F  M+D+++ +RH LN+   I  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQESSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND  + A  LI+++  +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|299771620|ref|YP_003733646.1| UPF0063 protein yfgB [Acinetobacter sp. DR1]
 gi|298701708|gb|ADI92273.1| UPF0063 protein yfgB [Acinetobacter sp. DR1]
          Length = 411

 Score =  305 bits (781), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 170/369 (46%), Positives = 224/369 (60%), Gaps = 25/369 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM R ELE+    IG      + R  Q+ KWI+   I DF  M++IS ++R  L 
Sbjct: 30  KVNLLGMSRTELEKFFEDIG----EKKFRAGQVMKWIHQYFITDFAEMTNISGKLRAKLE 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSSQ 121
           Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +     R TLC+SSQ
Sbjct: 86  QICEIKAPEVVHRHYSKDGTRKWVFRVGD---GAGSLVETVLIPAEDKTGLRKTLCISSQ 142

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKIS 180
           VGC+L CSFC TG Q   R+LT +EI+ Q+ +A  S + + P  E           R ++
Sbjct: 143 VGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAER---------ERSVT 193

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 253

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY----PGLSNARRITFEYVMLKGINDSP 296
           ISLHA +++LRN LVPIN+KYPL  LI AC+ Y       S  + +T EYVML+G+ND P
Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQP 313

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  +IK+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  RG 
Sbjct: 314 EHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 373

Query: 357 DILAACGQL 365
           DI AACGQL
Sbjct: 374 DIDAACGQL 382


>gi|94501127|ref|ZP_01307650.1| hypothetical protein RED65_06057 [Oceanobacter sp. RED65]
 gi|94426703|gb|EAT11688.1| hypothetical protein RED65_06057 [Oceanobacter sp. RED65]
          Length = 378

 Score =  305 bits (780), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 165/362 (45%), Positives = 225/362 (62%), Gaps = 20/362 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+G+  +++++  +++G        R  QI KWI+  GI +F  M+++S+ +R  L
Sbjct: 6   EKVNLLGLSPKKMKDFFVELG----EKPFRAQQILKWIHQVGIDNFDDMTNVSKVMREKL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
               ++ YPE+V   IS DGT+KW++R P     G   +ETVYIPE  RGTLCVSSQ+GC
Sbjct: 62  KDVATVQYPEVVFHDISKDGTKKWVMRMP-----GGSSVETVYIPEGDRGTLCVSSQIGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q   R+L+  EI+ QV +A     D PG E  E        RKI+N+VM
Sbjct: 117 SLDCSFCSTGKQGFNRDLSVAEIIGQVYVAAKSF-DKPG-EKRE--------RKITNVVM 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++ +  D      SKRR+TLSTSG VP +  + +   V LA+SLH
Sbjct: 167 MGMGEPLMNFDNVVDAMDLMMDDFCYGLSKRRVTLSTSGVVPKLYDLADVSDVSLAVSLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303
           A +++LRN LVPIN+KYP++ L+ AC HY G LS+ R++T EY ++  +ND    A  L 
Sbjct: 227 APNDELRNELVPINKKYPIKDLMAACNHYMGSLSDRRKLTVEYTLINKVNDELEHAQQLA 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LK  P KINLIPFNP+P   Y       +  F + +   G+   IRT RG DI AACG
Sbjct: 287 KLLKDTPCKINLIPFNPFPNSGYERPSNNRVYKFRDYLHSQGFIVTIRTTRGDDIDAACG 346

Query: 364 QL 365
           QL
Sbjct: 347 QL 348


>gi|241758847|ref|ZP_04756960.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114]
 gi|261380196|ref|ZP_05984769.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703]
 gi|241321055|gb|EER57268.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114]
 gi|284797045|gb|EFC52392.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703]
          Length = 362

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 155/346 (44%), Positives = 221/346 (63%), Gaps = 21/346 (6%)

Query: 25  GIPQRHVRM-----RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79
           G+ Q    M     R  Q+ +W++  G ++F+ M+D+++ +R  LN+  +I  P+++  +
Sbjct: 12  GLTQHFAEMGEKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLNEQATIEVPKLMMAQ 71

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
            S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   
Sbjct: 72  ESTDGTRKWLLD-----VGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQGFN 126

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNLTA EI+ Q+  A   +G           V P   R ISN+VMMGMGEP+ NFDNV  
Sbjct: 127 RNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVT 175

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259
           +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+
Sbjct: 176 ALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNK 235

Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
           KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI+++K +P K NLIPFN
Sbjct: 236 KYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFN 295

Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           P+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 296 PFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|254673132|emb|CBA07913.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|325144551|gb|EGC66850.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240013]
          Length = 364

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 152/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G ++F  M+D+++ +RH LN+   I  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG +P + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMIPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND  + A  LI+++  +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|110834724|ref|YP_693583.1| Fe-S-cluster redox protein [Alcanivorax borkumensis SK2]
 gi|123050394|sp|Q0VND7|RLMN_ALCBS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|110647835|emb|CAL17311.1| conserved Fe-S-cluster redox protein, putative [Alcanivorax
           borkumensis SK2]
          Length = 381

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 163/373 (43%), Positives = 226/373 (60%), Gaps = 33/373 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   +K +L+G+ R ++EE  L +G      + R  Q+ KWI+      F+ M+D+ + +
Sbjct: 1   MTAQQKVNLLGLSRPQMEEFFLTMG----EKKFRAQQVLKWIHHHQADSFEQMTDVGKAL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L++   I  P++  E IS DGTRKW+        GG VE  TV+IP+  RGTLCVSS
Sbjct: 57  RQKLSEVAEIRGPKVTHESISRDGTRKWVFEMDN---GGAVE--TVFIPDGRRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA------RSLLGDFPGCEDIEGMVIPS 174
           QVGC++ CSFC TG Q   R++T+ EI+ QV  A      R  LG  P            
Sbjct: 112 QVGCAVDCSFCSTGKQGFQRDMTSAEIIGQVWQASRAFGPRRNLGQHP------------ 159

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
               I+N+VMMGMGEPL N+D V  ++ I  D +G    K+RIT+STSG +P + ++ E+
Sbjct: 160 ----ITNVVMMGMGEPLLNYDKVLTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQLSED 215

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGI 292
           + V LA+SLHA +++LRN LVP+NRKYPL+ L+ AC+ Y      R   IT EYVML+ +
Sbjct: 216 LDVSLAVSLHAPNDELRNQLVPLNRKYPLKDLMAACKRYSKNITHRHNTITMEYVMLRDV 275

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND P  A  L+K+L GIP K+NLIPFNP+P   Y  S + DI+ F + +  +G  + +RT
Sbjct: 276 NDKPEHARQLVKLLNGIPVKVNLIPFNPFPHAGYERSRKNDILEFHKYLNDNGVMTTVRT 335

Query: 353 PRGLDILAACGQL 365
            RG DI AACGQL
Sbjct: 336 TRGDDIDAACGQL 348


>gi|120554052|ref|YP_958403.1| radical SAM protein [Marinobacter aquaeolei VT8]
 gi|205829787|sp|A1TZP7|RLMN_MARAV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120323901|gb|ABM18216.1| 23S rRNA m(2)A-2503 methyltransferase [Marinobacter aquaeolei VT8]
          Length = 369

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 160/362 (44%), Positives = 225/362 (62%), Gaps = 21/362 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM + +LE     +G      R R  Q+ +W++ RG+ DF  M+++S+ +R  L
Sbjct: 6   EKVNLLGMPKAKLEAFFETLG----EKRFRAQQVLQWMHQRGVDDFDQMTNMSKSLREQL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+V ++ S DGTRKW++R     +     +ETV IP+  RGTLCVSSQ+GC
Sbjct: 62  KEVAEIRGPEVVYDETSKDGTRKWVMR-----MDNGNSVETVLIPDGERGTLCVSSQIGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C+FC TG +   RNLTA EI+ QV +AR     F   +           R I+N+VM
Sbjct: 117 SLDCTFCSTGKRGFNRNLTAAEIIGQVWVARRAFMPFDPND-----------RPITNVVM 165

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV  ++++  + +    SKRR+TLSTSG VP + R+GE   V LAISLH
Sbjct: 166 MGMGEPLLNFENVVDAMNLMMEDLAYGISKRRVTLSTSGVVPALDRLGEVTDVSLAISLH 225

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLI 303
           A +++LRN LVP+N+KYP+  L+ A R Y   L + R+ T EY +++G+ND P  A  L+
Sbjct: 226 APNDELRNQLVPLNKKYPIAELLAATRRYLSRLPDKRKATIEYTVIEGVNDQPEHARELV 285

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+P KINLIPFNP+P  ++          F   +  +GY + IRT RG DI AACG
Sbjct: 286 VLLKGLPCKINLIPFNPFPESDFRRPSMNATRRFQTVLNEAGYVTTIRTTRGDDIDAACG 345

Query: 364 QL 365
           QL
Sbjct: 346 QL 347


>gi|319638408|ref|ZP_07993170.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa
           C102]
 gi|317400157|gb|EFV80816.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa
           C102]
          Length = 362

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 155/346 (44%), Positives = 221/346 (63%), Gaps = 21/346 (6%)

Query: 25  GIPQRHVRM-----RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79
           G+ Q    M     R  Q+ +W++  G ++F+ M+D+++ +R  LN+  +I  P+++  +
Sbjct: 12  GLTQHFAEMGEKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLNEQATIEVPKLMMAQ 71

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
            S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   
Sbjct: 72  ESTDGTRKWLLD-----VGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQGFN 126

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNLTA EI+ Q+  A   +G           V P   R ISN+VMMGMGEP+ NFDNV  
Sbjct: 127 RNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVT 175

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259
           +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+
Sbjct: 176 ALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNK 235

Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
           KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI+++K +P K NLIPFN
Sbjct: 236 KYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFN 295

Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           P+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 296 PFPNSGYERSTNENIRIFRDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|254427443|ref|ZP_05041150.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
 gi|196193612|gb|EDX88571.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
          Length = 380

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 163/373 (43%), Positives = 226/373 (60%), Gaps = 33/373 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   +K +L+G+ R ++EE  L +G      + R  Q+ KWI+      F+ M+D+ + +
Sbjct: 1   MTAQQKVNLLGLSRPQMEEFFLTMG----EKKFRAQQVLKWIHHHQADSFEQMTDVGKAL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L++   I  P++  E IS DGTRKW+        GG VE  TV+IP+  RGTLCVSS
Sbjct: 57  RQKLSEVAEIRGPKVTHESISRDGTRKWVFEMDN---GGAVE--TVFIPDGRRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA------RSLLGDFPGCEDIEGMVIPS 174
           QVGC++ CSFC TG Q   R++T+ EI+ QV  A      R  LG  P            
Sbjct: 112 QVGCAVDCSFCSTGKQGFQRDMTSAEIIGQVWQASRAFGPRRNLGQHP------------ 159

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
               I+N+VMMGMGEPL N+D V  ++ I  D +G    K+RIT+STSG +P + ++ E+
Sbjct: 160 ----ITNVVMMGMGEPLLNYDKVLTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQLSED 215

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGI 292
           + V LA+SLHA +++LRN LVP+NRKYPL+ L+ AC+ Y      R   IT EYVML+ +
Sbjct: 216 LDVSLAVSLHAPNDELRNQLVPLNRKYPLKDLMAACKSYSKNITHRHNTITMEYVMLRDV 275

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND P  A  L+K+L GIP K+NLIPFNP+P   Y  S + DI+ F + +  +G  + +RT
Sbjct: 276 NDKPEHARQLVKLLNGIPVKVNLIPFNPFPHAGYERSRKNDILEFHKYLNDNGVMTTVRT 335

Query: 353 PRGLDILAACGQL 365
            RG DI AACGQL
Sbjct: 336 TRGDDIDAACGQL 348


>gi|254499335|ref|ZP_05112006.1| radical SAM protein [Legionella drancourtii LLAP12]
 gi|254351440|gb|EET10304.1| radical SAM protein [Legionella drancourtii LLAP12]
          Length = 378

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/333 (48%), Positives = 212/333 (63%), Gaps = 17/333 (5%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  QI +WI+  G+ DF  M+++ + +R  L+Q   I  PEIV  + S DGT KWLL+  
Sbjct: 29  RAQQIIQWIHQSGLVDFAQMTNLGKALREKLSQLSYIKVPEIVTCQKSSDGTHKWLLKLD 88

Query: 94  -ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
              CI      ETV+IPE +RGTLCVSSQVGC+L CSFC T  Q   RNL+  EI+ QV 
Sbjct: 89  CGNCI------ETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           LA   L    G  D          ++++N+VMMGMGEPL NFDNV  +++I  D      
Sbjct: 143 LAVRELSTNQGVHD----------KRLTNVVMMGMGEPLLNFDNVVSAMNIMMDDFAYGL 192

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           SKRR+TLSTSG +P++ R+ +   V LA+SLHA +++LRN LVPIN+KYPL  L+  C+ 
Sbjct: 193 SKRRVTLSTSGVLPDLERLRQVSPVALAVSLHAPNDELRNELVPINKKYPLAQLMALCKI 252

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y      R++TFEYVMLKG+ND P  A  LIK+L+ +PAK+NLIPFNP+P  +Y  S Q 
Sbjct: 253 YFKDEPRRKVTFEYVMLKGVNDQPEHATQLIKLLRDVPAKVNLIPFNPFPMTQYQRSSQA 312

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F + +  +G ++  R  RG DI AACGQL
Sbjct: 313 AIDAFRDKLIANGINTITRKTRGDDIDAACGQL 345


>gi|308389428|gb|ADO31748.1| hypothetical protein NMBB_1442 [Neisseria meningitidis alpha710]
          Length = 364

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 152/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G ++F  M+D+++ +RH LN+   I  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLT+ EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTSAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND  + A  LI+++  +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|325204309|gb|ADY99762.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240355]
          Length = 364

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 152/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G ++F  M+D+++ +RH LN+   I  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLT+ EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTSAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND  + A  LI+++  +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|240115903|ref|ZP_04729965.1| hypothetical protein NgonPID1_06609 [Neisseria gonorrhoeae PID18]
 gi|260440282|ref|ZP_05794098.1| hypothetical protein NgonDG_04176 [Neisseria gonorrhoeae DGI2]
 gi|268601574|ref|ZP_06135741.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291043577|ref|ZP_06569293.1| ribosomal RNA large subunit methyltransferase N [Neisseria
           gonorrhoeae DGI2]
 gi|268585705|gb|EEZ50381.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291012040|gb|EFE04029.1| ribosomal RNA large subunit methyltransferase N [Neisseria
           gonorrhoeae DGI2]
          Length = 364

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 152/333 (45%), Positives = 216/333 (64%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G ++F  M+D+++ +RH LN+  SI  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQASIEIPKLMMSQESSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  +  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLNDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML G+ND  + A  LI+++K +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGVNDKAQHAYELIELVKDVPCKFNLIPFNPFPNSGYERSSNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++ +   +R  RG DI AACGQL
Sbjct: 309 NIRIFRDILQQAEFVVTVRKTRGDDIDAACGQL 341


>gi|262280923|ref|ZP_06058706.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257823|gb|EEY76558.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           calcoaceticus RUH2202]
          Length = 411

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 169/369 (45%), Positives = 225/369 (60%), Gaps = 25/369 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM R ELE+    IG      + R  Q+ KW++   I DF  M++IS ++R  L 
Sbjct: 30  KVNLLGMSRTELEKFFEDIG----EKKFRAGQVMKWMHQYFITDFAEMTNISGKLREKLE 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSSQ 121
           Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +     R TLC+SSQ
Sbjct: 86  QICEIKAPEVVHRHYSKDGTRKWVFRVGD---GAGSLVETVLIPAEDKTGLRKTLCISSQ 142

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKIS 180
           VGC+L CSFC TG Q   R+LT +EI+ Q+ +A  S + + P  E           R ++
Sbjct: 143 VGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAER---------ERSVT 193

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 253

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY----PGLSNARRITFEYVMLKGINDSP 296
           ISLHA +++LRN LVPIN+KYPL  LI AC+ Y       S+ + +T EYVML+G+ND P
Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESSRKHVTIEYVMLEGVNDHP 313

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  +IK+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  RG 
Sbjct: 314 EHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 373

Query: 357 DILAACGQL 365
           DI AACGQL
Sbjct: 374 DIDAACGQL 382


>gi|293610293|ref|ZP_06692594.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827525|gb|EFF85889.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124474|gb|ADY83997.1| putative Fe-S-cluster redox enzyme [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 411

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 169/369 (45%), Positives = 224/369 (60%), Gaps = 25/369 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM R ELE+    IG      + R  Q+ KWI+   + DF  M++IS ++R  L 
Sbjct: 30  KVNLLGMSRPELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLE 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSSQ 121
           Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +     R TLC+SSQ
Sbjct: 86  QICEIKAPEVVHRHYSKDGTRKWVFRVGE---GAGSLVETVLIPAEDKTGLRKTLCISSQ 142

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKIS 180
           VGC+L CSFC TG Q   R+LT +EI+ Q+ +A  S + + P  E           R ++
Sbjct: 143 VGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAER---------ERSVT 193

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 253

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY----PGLSNARRITFEYVMLKGINDSP 296
           ISLHA +++LRN LVPIN+KYPL  LI AC+ Y       S  + +T EYVML+G+ND P
Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQP 313

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  +IK+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  RG 
Sbjct: 314 EHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 373

Query: 357 DILAACGQL 365
           DI AACGQL
Sbjct: 374 DIDAACGQL 382


>gi|50083794|ref|YP_045304.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. ADP1]
 gi|81393776|sp|Q6FEM6|RLMN_ACIAD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|49529770|emb|CAG67482.1| conserved hypothetical protein; putative Fe-S-cluster redox enzyme
           [Acinetobacter sp. ADP1]
          Length = 414

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 175/369 (47%), Positives = 225/369 (60%), Gaps = 25/369 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM R ELE+   +IG      + R  QI KWI+   + D   M++IS ++R  L 
Sbjct: 33  KVNLLGMSRIELEQFFEQIG----EKKFRAGQIMKWIHQYFVTDLAEMTNISGKLRTKLE 88

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----SRGTLCVSSQ 121
           Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +    SR TLC+SSQ
Sbjct: 89  QVCEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISSQ 145

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKIS 180
           VGC+L CSFC TG Q   R+LT  EI+ Q+ +A +S + D P  E           R ++
Sbjct: 146 VGCALDCSFCSTGKQGFQRDLTPAEIIGQLWVANQSYVEDVPVAERT---------RAVT 196

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL NF  V  S+SI  D      SKRR+TLSTSG VP I ++ EE+ V LA
Sbjct: 197 NVVMMGMGEPLLNFKPVVHSMSIMLDDYAYGMSKRRVTLSTSGVVPMIDKLAEELDVALA 256

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGINDSP 296
           ISLHA +N LR+ LVPIN+KYPLE LI A + Y    G  +AR+ +T EYVML G+ND P
Sbjct: 257 ISLHAPNNPLRDELVPINKKYPLEQLIAAAQRYITKDGNESARKHVTIEYVMLDGVNDHP 316

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L+K+LK +P+KINLIPFNP+P   Y  S +  I+ F + +  +G+   IR  RG 
Sbjct: 317 EHAQQLVKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIMAFQKTLSDAGFVCTIRQTRGD 376

Query: 357 DILAACGQL 365
           DI AACGQL
Sbjct: 377 DIDAACGQL 385


>gi|261365781|ref|ZP_05978664.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996]
 gi|288565687|gb|EFC87247.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996]
          Length = 364

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G + F  M+D+++ +R  LN+  S+  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWIHQAGAQSFDEMTDLAKSLRLKLNEQASVDVPKLMMAQESSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND  + A  LI+++K +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSTNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|261377750|ref|ZP_05982323.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685]
 gi|269146035|gb|EEZ72453.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685]
          Length = 366

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 151/333 (45%), Positives = 218/333 (65%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G ++F  M+D+++ +R+ LN+  SI  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWIHQSGAQNFGEMTDLAKSLRYKLNEQASIDIPKLMMSQESSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNL+A EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESERGTLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NF+NV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFENVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + ++ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDKLRDTMPVALAVSLHASNDEVRNKIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML G+ND  + A  LI+++K +P K NLIPFNP+P   Y  S+ +
Sbjct: 249 YLVKAPRDFITFEYVMLDGVNDKAQHAYELIELVKDVPCKFNLIPFNPFPNSGYERSNNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRIFIDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|225075197|ref|ZP_03718396.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens
           NRL30031/H210]
 gi|224953372|gb|EEG34581.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens
           NRL30031/H210]
          Length = 398

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 155/346 (44%), Positives = 220/346 (63%), Gaps = 21/346 (6%)

Query: 25  GIPQRHVRM-----RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79
           G+ Q    M     R  Q+ +W++  G ++F+ M+D+++ +R  LN+  +I  P+++  +
Sbjct: 48  GLTQHFAEMGEKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLNEQATIEVPKLMMAQ 107

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
            S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   
Sbjct: 108 ESTDGTRKWLLD-----VGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQGFN 162

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNLTA EI+ Q+  A   +G           V P   R ISN+VMMGMGEP+ NFDNV  
Sbjct: 163 RNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVT 211

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259
           +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+
Sbjct: 212 ALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNK 271

Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
           KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI+++K +P K NLIPFN
Sbjct: 272 KYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFN 331

Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           P+P   Y  S  ++I  F + +++ G+   +R  RG DI AACGQL
Sbjct: 332 PFPNSGYERSTNENIRVFRDILQQVGFVVTVRKTRGDDIDAACGQL 377


>gi|311694381|gb|ADP97254.1| conserved hypothetical protein [marine bacterium HP15]
          Length = 370

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 159/362 (43%), Positives = 223/362 (61%), Gaps = 20/362 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM + +LE     +G      R R +Q+ +WI+ RG  DF  M+++S+ +R  L
Sbjct: 6   EKTNLLGMPKAKLEAFFESLG----EKRFRATQVLQWIHQRGADDFDQMTNMSKALREKL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+V ++ S DGTRKW++R     +     +ETV IP+  RGTLCVSSQ+GC
Sbjct: 62  KQVAEIRGPEVVYDETSKDGTRKWVMR-----MDNGNSVETVLIPDGERGTLCVSSQIGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C+FC TG +   RNLTA E++ QV +AR     F           P   R I+N+VM
Sbjct: 117 SLDCTFCSTGKRGFNRNLTAAEVIGQVWVARKAFMPFE----------PGPDRPITNVVM 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++++  + +    SKRR+TLSTSG VP + R+ E   V LAISLH
Sbjct: 167 MGMGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTLSTSGVVPALDRLSEVTDVSLAISLH 226

Query: 245 AVSNDLRNILVPINRKYPL-EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           A +++LRN LVP+N+KYP+ E+L    R++  L + R+ T EY +++G+ND P  A  L 
Sbjct: 227 APNDELRNKLVPLNKKYPISELLAATKRYFARLPDKRKATIEYTVIEGMNDQPEHARELA 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L+ +P KINLIPFNP+P  ++          F   +  +GY + IRT RG DI AACG
Sbjct: 287 VLLRDLPCKINLIPFNPFPESDFRRPSMNATRRFQNVLNEAGYITTIRTTRGDDIDAACG 346

Query: 364 QL 365
           QL
Sbjct: 347 QL 348


>gi|88812659|ref|ZP_01127906.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
 gi|88790075|gb|EAR21195.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
          Length = 378

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 159/360 (44%), Positives = 220/360 (61%), Gaps = 21/360 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+   R+ L+E L ++G P      R  Q+ KWI+ R + DF  M+D+ + +R  L 
Sbjct: 17  KANLLNFDRQALQEWLAQLGEPP----FRAVQLIKWIHQRRVFDFDRMTDLGKPLRARLA 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P  V ++ S DG RKWLL      + G   IETV+IPE  RGTLCVSSQ+GC 
Sbjct: 73  EIAEIRLPSAVFDRTSADGVRKWLL-----TLDGDNAIETVFIPEPGRGTLCVSSQLGCP 127

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+L               + +    V  +++N+V M
Sbjct: 128 LACTFCSTGQQGFNRNLTAAEIVGQLLFV------------TQALAADGVAGRVTNVVFM 175

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF +V K+ ++  D    + S+RR+TLSTSG VP + R+ E   + LA+SLHA
Sbjct: 176 GMGEPLANFASVLKASNLMVDEHAYNLSRRRVTLSTSGIVPALYRLAEVSRISLAVSLHA 235

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             + LR+ LVPINRKYP+  L+ ACR+Y   +   RIT+EYVML  +ND+   A  L ++
Sbjct: 236 PDDALRDELVPINRKYPIAELLAACRNYVECTPHHRITWEYVMLDAVNDTDGHAQALARL 295

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+P+KINLIPFN +PG  Y  S  + +  F+E ++R+GY + +R  RG DI  ACGQL
Sbjct: 296 LKGVPSKINLIPFNAFPGAPYRSSPPQRVARFTEILQRAGYITTVRKTRGDDIDGACGQL 355


>gi|330790726|ref|XP_003283447.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum]
 gi|325086712|gb|EGC40098.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum]
          Length = 390

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 156/358 (43%), Positives = 230/358 (64%), Gaps = 22/358 (6%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
           G+ + +L E   K+  P+  V     Q+WK +Y +GI   +  + IS+E + ++ ++F +
Sbjct: 54  GLPKLDLIEKFEKLNFPKYSV----DQVWKLMYNKGIDQIKDFNLISKERKSIMEENFKL 109

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
               I   ++S DGTRK+L+ F         E+E+V+IPE SRGTLCVSSQVGC+  C+F
Sbjct: 110 DTGTITKHQLSVDGTRKFLISFDGD------EVESVFIPESSRGTLCVSSQVGCTFACTF 163

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C+TGTQK  RNLTA EI+ QV+ AR LL DF   E+          R ++NIV MG GEP
Sbjct: 164 CFTGTQKFKRNLTANEIVAQVVAARKLLNDFNASEE----------RLLTNIVFMGQGEP 213

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSND 249
             N+ NVKK++SI +DS GL+  K +IT+STSG VP I R+G +  G+ LAISLH+ +++
Sbjct: 214 FYNYRNVKKAISIITDSNGLAIGKSKITVSTSGVVPIIERLGTDFPGIGLAISLHSPNDE 273

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           +R+ +V  NR++P+E L+ +C  +   + + RIT EYV L+ ++D+ +DAL+LI + K  
Sbjct: 274 VRSKIVTANRQWPIEELVQSCIKFSKTTKS-RITLEYVPLQDVHDTEQDALDLIPLCKRF 332

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           P+ +N+IPFNPWPG  +  S    I  F+  ++ +   + IR  RG DI+AACGQLKS
Sbjct: 333 PSLVNIIPFNPWPGSPHESSTNNQIQIFANILESNNVKTTIRQSRGRDIMAACGQLKS 390


>gi|149375014|ref|ZP_01892787.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
 gi|149360903|gb|EDM49354.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
          Length = 370

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 160/379 (42%), Positives = 231/379 (60%), Gaps = 20/379 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM + ++E     +G      R R +Q+ +WI+ RG  DF  M+++S+ +R  L
Sbjct: 6   EKTNLLGMPKAKMEAFFESLG----EKRFRATQVLQWIHQRGADDFDQMTNMSKVLREKL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+V ++ S DGTRKW++R     +     +ETV IP+  RGTLCVSSQ+GC
Sbjct: 62  KAVAEIRGPEVVYDESSKDGTRKWVMR-----MDNGNSVETVLIPDGERGTLCVSSQIGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C+FC TG +   RNLTA EI+ QV +AR     F           P   R I+N+VM
Sbjct: 117 SLDCTFCSTGKRGFNRNLTAAEIIGQVWVARKAFMPFE----------PGPDRPITNVVM 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++++  + +    SKRR+T+STSG VP + ++GE   V LAISLH
Sbjct: 167 MGMGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTVSTSGVVPALDKLGEVTDVSLAISLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303
           A +++LRN LVP+N+KYP+  L+ A R Y   L + R+ T EY +++G+ND P  A  L 
Sbjct: 227 APNDELRNQLVPLNKKYPIAELLAATRRYLARLPDKRKATIEYTVIEGVNDQPEHARELA 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L+G+P KINLIPFNP+P  ++          F   +  +GY + +RT RG DI AACG
Sbjct: 287 VVLRGLPCKINLIPFNPFPESDFRRPSMNATRRFQSVLNEAGYIATVRTTRGDDIDAACG 346

Query: 364 QLKSLSKRIPKVPRQEMQI 382
           QL  + +   K  ++ +Q+
Sbjct: 347 QLVGMVEDRTKRSQRYIQV 365


>gi|126668577|ref|ZP_01739531.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17]
 gi|126626982|gb|EAZ97625.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17]
          Length = 370

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 159/362 (43%), Positives = 222/362 (61%), Gaps = 20/362 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM + +LE     +G      R R +Q+ +W++ RG+ DF  M+++S+ +R  L
Sbjct: 6   EKTNLLGMPKAKLEAYFESLG----EKRFRATQVLQWVHQRGVGDFDEMTNMSKPLRDKL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                +  PE+V ++++ DGTRKW++R     +     IETV IP+  RGTLCVSSQ+GC
Sbjct: 62  KLIAEVRGPEVVYDELAKDGTRKWVMR-----MDNGNNIETVLIPDGERGTLCVSSQIGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG +   RNLT+ EI+ QV  AR     +           P   R I+N+VM
Sbjct: 117 SLDCSFCSTGKRGFNRNLTSAEIIGQVWAARKTFMPY----------APGPDRPITNVVM 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++++  + +    SKRR+TLSTSG VP I ++GE   V LAISLH
Sbjct: 167 MGMGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTLSTSGVVPAIDKLGEVTDVSLAISLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLI 303
           A +++LRN LVPIN+KYP+  L+ A R Y   L + R+ T EY ++ G+ND    A  L 
Sbjct: 227 AANDELRNQLVPINKKYPIAELLAATRRYLSRLPDKRKATIEYTLMAGVNDHVDQARELA 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L+G+P KINLIPFNP+P   Y          F   +  +GY + +R PRG DI AACG
Sbjct: 287 EVLRGLPCKINLIPFNPFPESGYERPSMNATRRFQTVLNEAGYIATVRMPRGDDIDAACG 346

Query: 364 QL 365
           QL
Sbjct: 347 QL 348


>gi|332971507|gb|EGK10457.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330]
          Length = 364

 Score =  302 bits (773), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 158/347 (45%), Positives = 213/347 (61%), Gaps = 18/347 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G  +F+ M+D+++ +R  L Q   +  P ++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWIHQGGAENFEQMTDLAKSLRAKLEQQAEVGIPALMTSQESKDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNL+A EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPETERGTLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   LG           V P   R ISN+VMMGMGEPL N+DNV  +LSI  D  G   
Sbjct: 140 WANKALG-----------VTPKNERVISNVVMMGMGEPLANYDNVITALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ E++ V LA+SLHA ++ +R+ +VP+N+KYPL+ L+ AC  
Sbjct: 189 SRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDKVRDEIVPLNKKYPLKELMAACNR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML G+ND P  A  L++++K  P K NLIPFNP+P   Y  S  K
Sbjct: 249 YLVKAPRDFITFEYVMLDGVNDKPEHARELVELVKDTPCKFNLIPFNPFPNSGYERSSNK 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
           +I  F E +  +   + +R  RG DI AACGQL    K   K  RQE
Sbjct: 309 NINIFKEILMEADLVTTVRKTRGDDIDAACGQLAGQVK--DKTKRQE 353


>gi|262371087|ref|ZP_06064409.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046]
 gi|262313973|gb|EEY95018.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046]
          Length = 411

 Score =  302 bits (773), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 169/373 (45%), Positives = 228/373 (61%), Gaps = 25/373 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N + K +L+GM R +LE+    +G      + R  Q+ KWI+   + DF  M++IS ++R
Sbjct: 26  NSVAKVNLLGMSRPQLEKFFEDMG----EKKFRAGQVMKWIHQFFVTDFAEMTNISGKLR 81

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG----TLC 117
             L +   I  PE+V +  S DGTRKW+ R      G    +ETV IP + R     TLC
Sbjct: 82  EKLEKLCEIKAPEVVHKNYSKDGTRKWVFRVGE---GEGSLVETVLIPAEHRSGLRRTLC 138

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVG 176
           +SSQVGC+L CSFC TG Q   R+L  +EI+ Q+ +A  S + D P  E           
Sbjct: 139 ISSQVGCALDCSFCSTGKQGFQRDLNPDEIIGQLWVANYSYMEDVPVAER---------E 189

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           R ++N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I 
Sbjct: 190 RSVTNVVMMGMGEPLLNYDAVLSSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDID 249

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGI 292
           V LAISLHA +++LRN LVPIN+KYPL  LI AC+ Y    G  +AR+ +T EYVML G+
Sbjct: 250 VALAISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLDGV 309

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND P  A  +IK+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR 
Sbjct: 310 NDHPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQ 369

Query: 353 PRGLDILAACGQL 365
            RG DI AACGQL
Sbjct: 370 TRGDDIDAACGQL 382


>gi|262374935|ref|ZP_06068169.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           lwoffii SH145]
 gi|262309948|gb|EEY91077.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           lwoffii SH145]
          Length = 411

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 168/373 (45%), Positives = 228/373 (61%), Gaps = 25/373 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N ++K +L+GM R ++E+    +G      + R  Q+ KWI+   + DF  M++IS ++R
Sbjct: 26  NTVEKVNLLGMSRPQMEKFFEDMG----EKKFRAGQVMKWIHQFFVTDFAEMTNISGKLR 81

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG----TLC 117
             L +   I  PE+V +  S DGTRKW+ R      G    +ETV IP + R     TLC
Sbjct: 82  EKLEKICEIKAPEVVHKNYSKDGTRKWVFRVGD---GEGSLVETVLIPAEHRSGLRRTLC 138

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVG 176
           +SSQVGC+L CSFC TG Q   R+LT  EI+ Q+ +A  S + D P  E           
Sbjct: 139 ISSQVGCALDCSFCSTGKQGFQRDLTQAEIIGQLWMANYSYMEDVPVLER---------E 189

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           R ++N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I 
Sbjct: 190 RSVTNVVMMGMGEPLLNYDAVLNSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQMVKDID 249

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY----PGLSNARRITFEYVMLKGI 292
           V LAISLHA +++LRN LVPIN+KYPLE LI AC+ Y       S+ + +T EYVML G+
Sbjct: 250 VALAISLHAPNDELRNELVPINKKYPLEQLIAACQRYIAKDGNESSRKHVTIEYVMLDGV 309

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND P  A  +IK+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR 
Sbjct: 310 NDHPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQ 369

Query: 353 PRGLDILAACGQL 365
            RG DI AACGQL
Sbjct: 370 TRGDDIDAACGQL 382


>gi|255067157|ref|ZP_05319012.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256]
 gi|255048525|gb|EET43989.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256]
          Length = 364

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 151/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G + F  M+D+++ +R  LN+  S+  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWIHQAGAQSFDEMTDLAKSLRLKLNEQASVDVPKLMMAQESTDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NF+NV  +LSI  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFENVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML G+ND  + A  LI+++K +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGVNDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSTNE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341


>gi|34498996|ref|NP_903211.1| hypothetical protein CV_3541 [Chromobacterium violaceum ATCC 12472]
 gi|81654669|sp|Q7NS85|RLMN_CHRVO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|34104846|gb|AAQ61203.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 364

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/360 (43%), Positives = 216/360 (60%), Gaps = 20/360 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    ++L +   ++G        R  Q+ +W++     DF  M+D+++ +R  L+
Sbjct: 2   KTNLLDFNLDQLTQHFAEMG----EKPFRAKQVMRWMHQMAEDDFDAMTDLAKSLRAKLH 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   +  P ++  + S DGTRKWLL      +G    +ETV+IPE  RGTLCVSSQVGC+
Sbjct: 58  ERAEVRVPSLMTGQASSDGTRKWLLD-----VGTGNGVETVFIPEDDRGTLCVSSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNL+  EI+ Q+  A   +G           V P   R +SN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKAMG-----------VTPKNERVVSNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D  G   S+RR+TLSTSG VP + R+ EE  V LA+SLHA
Sbjct: 162 GMGEPLANFDNVVSAMQIMLDDHGYGLSRRRVTLSTSGLVPQMDRLREECPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +R+++VPIN+KYPL  L+ ACR Y   +    ITFEYVML G+ND P  A  L+++
Sbjct: 222 PNDAIRDVIVPINKKYPLSELMAACRRYLEKAPRDFITFEYVMLDGVNDRPEHARQLLEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++ +P K NLIPFNP+P   Y  S    I  F E ++  GY   +R  RG DI AACGQL
Sbjct: 282 VRDVPCKFNLIPFNPFPNSGYDRSSNNAIRIFREILQEQGYVVTVRKTRGDDIDAACGQL 341


>gi|146283364|ref|YP_001173517.1| radical SAM protein [Pseudomonas stutzeri A1501]
 gi|145571569|gb|ABP80675.1| radical SAM enzyme, Cfr family [Pseudomonas stutzeri A1501]
          Length = 347

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 157/327 (48%), Positives = 202/327 (61%), Gaps = 16/327 (4%)

Query: 40  KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG 99
           KWI+  G+ DF  MS++ + +R  L     I  PEIV E IS DGTRKW++R  +     
Sbjct: 2   KWIHHFGVDDFDAMSNLGKALREKLKACAEIRGPEIVSEDISSDGTRKWVVRVASGSC-- 59

Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159
              +ETVYIP+  RGTLCVSSQ GC+L CSFC TG Q    NLTA E++ QV +A    G
Sbjct: 60  ---VETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFG 116

Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
             P            + R I+N+VMMGMGEPL NFDNV  ++ I  D +G   SKR++TL
Sbjct: 117 TVPA----------KIDRAITNVVMMGMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTL 166

Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSN 278
           STSG VP I  + + I V LA+SLHA +  LR+ LVPIN+KYPL++L+ AC+ Y   L  
Sbjct: 167 STSGVVPMIDELAKVIDVSLALSLHAPNEALRDQLVPINKKYPLDVLLAACKRYVSRLGE 226

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFS 338
            R +T EY +LKG+ND P  A  +I +L  IP KINLIPFNP+P   Y       I  F 
Sbjct: 227 KRVLTIEYTLLKGVNDQPEHAEQMIALLADIPCKINLIPFNPFPHSGYERPSNNAIRRFQ 286

Query: 339 ECIKRSGYSSPIRTPRGLDILAACGQL 365
           + + + G++  +RT RG DI AACGQL
Sbjct: 287 DILHKGGHNVTVRTTRGEDIDAACGQL 313


>gi|294789305|ref|ZP_06754543.1| radical SAM enzyme, Cfr family [Simonsiella muelleri ATCC 29453]
 gi|294482730|gb|EFG30419.1| radical SAM enzyme, Cfr family [Simonsiella muelleri ATCC 29453]
          Length = 363

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 157/347 (45%), Positives = 212/347 (61%), Gaps = 18/347 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G  +F  M+D+++ +R  LN +  +  P ++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWIHQSGAENFDQMTDLAKSLRAKLNDNAQVGIPALITSQESKDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNL+  EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPETERGTLCISSQVGCALECTFCSTGRQGFNRNLSTAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   LG           V P   R ISN+VMMGMGEPL N+DNV  +LSI  D  G   
Sbjct: 140 WANKALG-----------VTPKNERVISNVVMMGMGEPLANYDNVINALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ E++ V LA+SLHA ++ +R+ +VP+N+KYPL+ L+ AC  
Sbjct: 189 SRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDQVRDKIVPLNKKYPLKELMAACNR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND P  A  L++++K  P K NLIPFNP+P   Y  S  K
Sbjct: 249 YLMKAPRDFITFEYVMLDGINDKPEHAHELVQLVKDTPCKFNLIPFNPFPNSGYERSSNK 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
           +I  F E +  +   + +R  RG DI AACGQL    +   K  RQE
Sbjct: 309 NINIFKEILMEADLVTTVRKTRGDDIDAACGQLAGQVQ--DKTKRQE 353


>gi|292491212|ref|YP_003526651.1| radical SAM protein [Nitrosococcus halophilus Nc4]
 gi|291579807|gb|ADE14264.1| radical SAM enzyme, Cfr family [Nitrosococcus halophilus Nc4]
          Length = 372

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 163/358 (45%), Positives = 220/358 (61%), Gaps = 20/358 (5%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+ + R  LE    ++G        R  Q+ +W++ + + DF  M+D+S+ +R  L + 
Sbjct: 8   NLLNLDRVGLEAFFARLG----EKPFRARQMLRWLHQQFVTDFSAMTDLSKSLRARLAET 63

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             I  PE+V +  S DGT KWLLR     + G   IETV+IPE+ RGTLCVSSQVGC L 
Sbjct: 64  AVIALPEVVHQHHSTDGTYKWLLR-----VSGGNCIETVFIPEEDRGTLCVSSQVGCILD 118

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC TG Q   RNL   EI+ Q+ LA   LG  P  E I           I+N+VMMGM
Sbjct: 119 CSFCATGKQGFNRNLGVSEIIGQLWLANKALGRDPKGERI-----------ITNVVMMGM 167

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV  ++++  D      S RR+TLST+G VP + R+     V LA+SLHA +
Sbjct: 168 GEPLANFNNVVAAMNLMLDDFSYGLSWRRVTLSTAGMVPAMDRLRAICPVSLAVSLHAPT 227

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           ++LR+ LVP+N++YP+  L+ ACR Y      R +TFEYVML G+NDS + A  L+++L+
Sbjct: 228 DELRDELVPLNKRYPIGELLAACRRYVAGDRRRAVTFEYVMLAGVNDSLQHARALLRLLQ 287

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           G+PAK+NLIPFNP+PG  Y  SD + I  F E + R G  +  R  RG DI AACGQL
Sbjct: 288 GLPAKVNLIPFNPFPGSLYRRSDTETIDRFREELLRGGLMTVTRKTRGDDIAAACGQL 345


>gi|224826446|ref|ZP_03699548.1| radical SAM enzyme, Cfr family [Lutiella nitroferrum 2002]
 gi|224601547|gb|EEG07728.1| radical SAM enzyme, Cfr family [Lutiella nitroferrum 2002]
          Length = 364

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 207/333 (62%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G  DF  M+DI++ +R  L++   +  P+++ E+ S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQMGEADFDAMTDIAKSLRCKLHESAEVRVPDLMVEQASSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNL+  EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPEDDRGTLCISSQVGCALECTFCSTGRQGFNRNLSTAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEPL NFDNV  +L I  D  G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPLANFDNVVSALQIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ E   V LA+SLHA ++ +R+++VPIN+KYPL  L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLREACPVALAVSLHAPNDAIRDVIVPINKKYPLRELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    +TFEYVML  +ND P  A  LI+++K +P K NLIPFNP+P   Y  S   
Sbjct: 249 YLEKAPRDFVTFEYVMLDDVNDRPEHARQLIELVKDVPCKFNLIPFNPFPNSGYERSSNN 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F E ++ +GY   +R  RG DI AACGQL
Sbjct: 309 AIHRFREILQEAGYVVTVRKTRGDDIDAACGQL 341


>gi|119476380|ref|ZP_01616731.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
           HTCC2143]
 gi|119450244|gb|EAW31479.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
           HTCC2143]
          Length = 386

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 170/382 (44%), Positives = 231/382 (60%), Gaps = 22/382 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+G+ RE++E   + +G        R  Q+ KWI+ +G+ +F  M++IS+ +R  L
Sbjct: 16  EKTNLLGLSREKMEAFCVSLG----EKPFRAQQLLKWIHHQGVDNFDAMTNISKALRSRL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PEIV +  S DGTRKW +R     I G   +ETV IP+  RGTLCVSSQVGC
Sbjct: 72  IQCAEIRPPEIVSQNDSVDGTRKWAIR-----IAGGGLVETVLIPDGDRGTLCVSSQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q   R+L+A EI+ QV LA +    FP              R I+N+VM
Sbjct: 127 SLDCSFCSTGKQGFQRDLSAAEIIGQVWLAINSYDAFPSTNK----------RIITNVVM 176

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +S+S+  D  G   SKRR+TLSTSG VP + ++G+   V LAISLH
Sbjct: 177 MGMGEPLLNFDNVVQSMSLMMDDFGYGISKRRVTLSTSGVVPALDKLGDVSEVSLAISLH 236

Query: 245 AVSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRI-TFEYVMLKGINDSPRDALNL 302
           A +++LR+ LVPIN+KYP+  L+ AC R++   ++  R+ T EY ++ G+NDS   A  L
Sbjct: 237 APNDELRSQLVPINKKYPIAELLAACGRYWAKQTDTHRVTTVEYTLIAGVNDSREHAKEL 296

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+LK  P KINLIPFNP+   +Y    +K I  F + +  S   + +R  RG DI AAC
Sbjct: 297 AKLLKDFPCKINLIPFNPFSLSDYQRPSKKTIDQFWQVLSNSSIVTTVRNTRGDDIDAAC 356

Query: 363 GQL-KSLSKRIPKVPRQEMQIT 383
           GQL   ++ R  +  R     T
Sbjct: 357 GQLVGQVADRTKRSERHRTNYT 378


>gi|91792611|ref|YP_562262.1| hypothetical protein Sden_1253 [Shewanella denitrificans OS217]
 gi|123356968|sp|Q12PT7|RLMN_SHEDO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|91714613|gb|ABE54539.1| conserved hypothetical protein [Shewanella denitrificans OS217]
          Length = 373

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 170/385 (44%), Positives = 227/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L     ++G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRSKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AERCVIVAPEIASFQKSADGTIKFAIN-----VGQGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG Q   RNLT  EI+ Q+      LG           V  +  R I+N+VM
Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVAQFLG----------FVKTTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP +  +G+ I V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDSIDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL   +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPVNKKYPLAEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|329120380|ref|ZP_08249047.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462335|gb|EGF08661.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 362

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/347 (44%), Positives = 217/347 (62%), Gaps = 18/347 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G  DF  M+D+++ +R  L +H  +  P ++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHWGGAADFAEMTDLAKSLRAKLEEHACVGAPALMASQESRDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLT  EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPESERGTLCISSQVGCALECTFCSTGRQGFNRNLTTAEIVGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   LG  P  E           R ISN+VMMGMGEPL N+DNV +SLS+  D  G   
Sbjct: 140 WANKALGATPKDE-----------RVISNVVMMGMGEPLANYDNVVRSLSVMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ E++ V LA+SLHA ++ +R+ +VP+N+KYPL+ L+ ACR 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDHVRDQIVPLNKKYPLKDLMAACRR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    +TFEYVML G+ND    A  L+K+++ +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFVTFEYVMLDGVNDKAEHARELLKLVEDVPCKFNLIPFNPFPHSGYERSSAE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
           +I  F + ++++G+   +R  RG DI AACGQL    K   K  RQ+
Sbjct: 309 NIRIFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQVK--DKTRRQQ 353


>gi|160876257|ref|YP_001555573.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
           OS195]
 gi|217972550|ref|YP_002357301.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
           OS223]
 gi|304410038|ref|ZP_07391657.1| radical SAM enzyme, Cfr family [Shewanella baltica OS183]
 gi|307302249|ref|ZP_07582007.1| radical SAM enzyme, Cfr family [Shewanella baltica BA175]
 gi|205829880|sp|A9KXL1|RLMN_SHEB9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807210|sp|B8E9S4|RLMN_SHEB2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|160861779|gb|ABX50313.1| radical SAM enzyme, Cfr family [Shewanella baltica OS195]
 gi|217497685|gb|ACK45878.1| radical SAM enzyme, Cfr family [Shewanella baltica OS223]
 gi|304351447|gb|EFM15846.1| radical SAM enzyme, Cfr family [Shewanella baltica OS183]
 gi|306914287|gb|EFN44708.1| radical SAM enzyme, Cfr family [Shewanella baltica BA175]
 gi|315268446|gb|ADT95299.1| radical SAM enzyme, Cfr family [Shewanella baltica OS678]
          Length = 373

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 168/385 (43%), Positives = 226/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KW+Y  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADMG----EKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSFQKSTDGTIKFAIN-----VGQGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG Q   RNLT  EI+ Q+      LG              +  R I+N+VM
Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ I V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVPIN+KYPL+  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|304415499|ref|ZP_07396137.1| hypothetical protein in radical SAM superfamily [Candidatus
           Regiella insecticola LSR1]
 gi|304282648|gb|EFL91173.1| hypothetical protein in radical SAM superfamily [Candidatus
           Regiella insecticola LSR1]
          Length = 378

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 168/381 (44%), Positives = 227/381 (59%), Gaps = 33/381 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R++L    +++G        R  Q+ KWIY     DF+ MSDI++ +R  L 
Sbjct: 10  KVNLLDLNRQQLRHFFIEMG----EKPFRADQVMKWIYHYCYDDFEQMSDINKVLRTKLQ 65

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q   I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 66  QIAEIRAPEVAQEQRSADGTIKWAIKV------GDQQVETVYIPEADRATLCVSSQVGCA 119

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184
           L C+FC T  Q   RNL   EI+ QV  A  ++G            + S GR+ I+N+VM
Sbjct: 120 LECTFCSTAQQGFSRNLRVAEIIGQVWRAAKIIGS-----------LKSSGRRPITNVVM 168

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 169 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 228

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++++R+ +VPINRKY ++  + A R Y   SNA   R+T EYVML  INDSP  A  L
Sbjct: 229 APTDEIRDEIVPINRKYNIDTFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSPEQAHQL 288

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ + + G+++ +R  RG DI AAC
Sbjct: 289 AECLKNTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLIQYGFTTIVRKTRGDDIDAAC 348

Query: 363 GQL---------KSLSKRIPK 374
           GQL         ++L KRI K
Sbjct: 349 GQLAGEVIDRTKRTLKKRIAK 369


>gi|88858483|ref|ZP_01133125.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster
           domain [Pseudoalteromonas tunicata D2]
 gi|88820100|gb|EAR29913.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster
           domain [Pseudoalteromonas tunicata D2]
          Length = 392

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 167/379 (44%), Positives = 231/379 (60%), Gaps = 21/379 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + RE + E  +  G        R  Q+ KWIY  G+ +F  MS+I+++++  L
Sbjct: 18  KKINLLDLNREGMRELFVSFG----EKPFRGDQVMKWIYHFGVDNFDEMSNINKKLKARL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I+ PEI  ++++ DGT K+ L      + G  E+ETV+IPEK R TLCVSSQVGC
Sbjct: 74  ERECEIVAPEISAKQVAADGTIKYAL-----LLEGGQEVETVWIPEKERATLCVSSQVGC 128

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL   EI+ QV             +DI G+   S  R ++N+VM
Sbjct: 129 ALECTFCSTAQQGFNRNLKVSEIIGQVWRV---------AKDI-GLYGDSTRRPVTNVVM 178

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ +  D      SKRR+TLSTSG VP +  + E I V LAISLH
Sbjct: 179 MGMGEPLLNINNVVPAMELMMDDWAFGLSKRRVTLSTSGVVPALDILKERIDVALAISLH 238

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303
           A  N LR++LVPIN+KYP+E  + ACR Y   S A + +T EYVML GINDS   A  L+
Sbjct: 239 APDNALRDVLVPINKKYPIEEFLAACRRYIDGSKANKDVTVEYVMLDGINDSMEQAHQLV 298

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LKG P+K+NLIPFNP+PG EY  S    I  FS+ ++ +G +  +R  RG DI AACG
Sbjct: 299 ETLKGTPSKVNLIPFNPFPGNEYGRSSNSRIDRFSKILQAAGITCIVRRTRGDDIDAACG 358

Query: 364 QL-KSLSKRIPKVPRQEMQ 381
           QL   +  R  ++ ++++Q
Sbjct: 359 QLVGDVVDRTKRLAKRQLQ 377


>gi|325265757|ref|ZP_08132444.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
 gi|324982740|gb|EGC18365.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
          Length = 364

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 160/349 (45%), Positives = 215/349 (61%), Gaps = 22/349 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G   F  M+D+++ +R  L +   +  P ++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWIHQGGAESFDEMTDLAKSLRAKLQEKAVVGIPVLMAAQESRDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPETERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   LG           V P   R ISN+VMMGMGEP+ N+DNV  +LSI  D  G   
Sbjct: 140 WANKALG-----------VTPKNERVISNVVMMGMGEPMANYDNVVTALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ E++ V LA+SLHA ++ +R+ +VP+N+KYPL+ L+ AC  
Sbjct: 189 SRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDKVRDEIVPLNKKYPLKELMAACNR 248

Query: 273 YPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           Y  L+ A R  ITFEYVML G+ND P  A  L++++K  P K NLIPFNP+P   Y  S 
Sbjct: 249 Y--LTKAPRDFITFEYVMLDGVNDKPEHAHELVQLVKDTPCKFNLIPFNPFPNSGYERSS 306

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
            K+I  F E +  +G  + +R  RG DI AACGQL    +   K  RQE
Sbjct: 307 NKNINIFKEILMEAGLVTTVRKTRGDDIDAACGQLAGQVQ--DKTKRQE 353


>gi|238897947|ref|YP_002923627.1| radical SAM domain protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465705|gb|ACQ67479.1| radical SAM domain protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 393

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 167/363 (46%), Positives = 220/363 (60%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+   R++L +  +KIG        R  QI KWIY     DF  M+DI++++R  L
Sbjct: 33  KKINLLDFNRQKLRDFFVKIG----EKPFRADQIMKWIYHYCYDDFSLMTDINKQLRDKL 88

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 89  QKIAEIRAPEVAKEQSSSDGTIKWAIKV------GDQQVETVYIPESDRATLCVSSQVGC 142

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL+  EI+ QV  A  ++G        +G       R I+N+VM
Sbjct: 143 ALECRFCSTAQQGFNRNLSVSEIIGQVWRAAKIIGSLKS----KGQ------RPITNVVM 192

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  +++I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 193 MGMGEPLLNINNVVPAMAIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 252

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+RN LVPINRKY +E L+ A R Y   SNA   R+T EYVML  +NDS + A  L
Sbjct: 253 APTDDIRNELVPINRKYNIETLLAAVRRYLTKSNANQGRVTIEYVMLNHVNDSLKQAHQL 312

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
              LK  P KINLIP+NP+PG +Y  S    I  F++ + +  +++ IR  RG DI AAC
Sbjct: 313 ADCLKNTPCKINLIPWNPFPGADYGRSSNSRIDRFAKVLMQYDFTTIIRKTRGNDIDAAC 372

Query: 363 GQL 365
           GQL
Sbjct: 373 GQL 375


>gi|153001521|ref|YP_001367202.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
           OS185]
 gi|205829879|sp|A6WQQ0|RLMN_SHEB8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|151366139|gb|ABS09139.1| radical SAM enzyme, Cfr family [Shewanella baltica OS185]
          Length = 373

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 168/385 (43%), Positives = 226/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KW+Y  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADMG----EKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSFQKSTDGTIKFAIN-----VGQGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG Q   RNLT  EI+ Q+      LG              +  R I+N+VM
Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVPIN+KYPL+  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|331005925|ref|ZP_08329273.1| transcriptional regulator, Crp/Fnr family [gamma proteobacterium
           IMCC1989]
 gi|330420281|gb|EGG94599.1| transcriptional regulator, Crp/Fnr family [gamma proteobacterium
           IMCC1989]
          Length = 403

 Score =  298 bits (764), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 160/363 (44%), Positives = 220/363 (60%), Gaps = 21/363 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+G+   +L      IG      + R  Q+ KWI+  G+ DF  MS+IS+ +R  L
Sbjct: 18  EKINLLGLSTSKLTAFFESIG----EKKFRAIQVQKWIHQNGVDDFSAMSNISKPLREKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++   I  PE++ +  S DGTRK+L++     + G   +ETV+IP+  RGTLCVSSQVGC
Sbjct: 74  SRIAEIRAPEVIKQLDSVDGTRKFLIK-----VSGDNVVETVFIPDGDRGTLCVSSQVGC 128

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q   R+LTA EI+ QV +A    G             P   R ++N+VM
Sbjct: 129 SLDCSFCATGKQGFNRDLTAAEIIGQVWIAAKSYGQLD----------PKADRTVTNVVM 178

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  S+++  D      SKRR+TLSTSG VP + R+GE   V LA+SLH
Sbjct: 179 MGMGEPLLNFDNVVDSMNLMMDDNAYGLSKRRVTLSTSGVVPALDRLGEHCDVSLAVSLH 238

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY-PGL-SNARRITFEYVMLKGINDSPRDALNL 302
           A ++ LRN LVPIN+KYP+ +L+ + + Y  GL  N R++T EY ++  +ND P  A  L
Sbjct: 239 APNDALRNELVPINKKYPIAVLLASAKRYIDGLPDNRRKMTIEYTLIDQVNDRPHHAYEL 298

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++L+ IP KINLIPFNP+    Y       +  F   +   G+++ +RT RG DI AAC
Sbjct: 299 AELLREIPVKINLIPFNPFDLVNYKRVSNNALRNFQNILINEGFTTTVRTTRGDDIDAAC 358

Query: 363 GQL 365
           GQL
Sbjct: 359 GQL 361


>gi|298368581|ref|ZP_06979899.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282584|gb|EFI24071.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 364

 Score =  298 bits (764), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 152/350 (43%), Positives = 222/350 (63%), Gaps = 16/350 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G ++F  M+D+++ +R  L +  +I  P+++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQAGAQNFDEMTDLAKSLRQKLIEGATIEVPKLMAAQESSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPETDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEP+ NFDNV  +LSI  D+ G   
Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDNHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDKIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML G+ND+ + A  LI +++ +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFITFEYVMLDGVNDNAQHARELIDLVRDVPCKFNLIPFNPFPHSGYERSSAE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQI 382
           +I  F + ++++G+   +R  RG DI AACGQL    K   +  ++  QI
Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQVKDKTRRQQKWQQI 358


>gi|118594986|ref|ZP_01552333.1| hypothetical protein MB2181_04920 [Methylophilales bacterium
           HTCC2181]
 gi|118440764|gb|EAV47391.1| hypothetical protein MB2181_04920 [Methylophilales bacterium
           HTCC2181]
          Length = 363

 Score =  298 bits (764), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 161/359 (44%), Positives = 217/359 (60%), Gaps = 14/359 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+     EL E L K G    H   R  Q+ KWIY  G  DF  M+D+++  R  L  
Sbjct: 2   DNLLDFNLRELTEYLEKFG----HKPYRAKQLLKWIYQSGEHDFSQMTDLAKSFRQSLQT 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P I  + +S DGTRKWLL      +G    IE V+IPE  RGTLC+SSQVGC+L
Sbjct: 58  TSEIATPSIQLDHLSTDGTRKWLLD-----VGAKNGIEAVFIPETDRGTLCISSQVGCAL 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG Q   RNLT+ EI+ Q+ LA  +L      E     ++    R I+N+VMMG
Sbjct: 113 ECTFCSTGRQGFNRNLTSGEIVGQLWLANKMLR-----EQANYRLLAHEDRIITNVVMMG 167

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+++V  +L +  D      S+RR+TLSTSG +P I ++ ++  V LAISLHA 
Sbjct: 168 MGEPLTNYNHVVHALEMMLDDHVYGLSRRRVTLSTSGLIPAIDKLRDDCPVSLAISLHAP 227

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            + LR+ +VPIN+KYPL+ L+ AC  Y   +    +TFEYVML+G+NDS   A  L+K++
Sbjct: 228 DDKLRDEIVPINKKYPLQDLMAACIRYIEKAPRDFVTFEYVMLEGVNDSVDQAKALVKLV 287

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           K +P K NLIPFNP+P   YLCS +  I  F + +  +G  + +R  RG DI AACGQL
Sbjct: 288 KNVPCKFNLIPFNPFPNSGYLCSSRSVINAFKQVLMDAGLVATVRKTRGDDIDAACGQL 346


>gi|332141967|ref|YP_004427705.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551989|gb|AEA98707.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 372

 Score =  298 bits (764), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 161/364 (44%), Positives = 218/364 (59%), Gaps = 21/364 (5%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+ + RE L     ++G        R  Q+ KWIY  G+ DF+ MS++++ +R +
Sbjct: 1   MAKTNLLNLNREGLRNFFKEMG----EKPFRADQVMKWIYQHGVSDFEEMSNLNKNLRAM 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++  I  PEI   + + DGT K+ L      + G  E+E+V+IPE  R TLCVSSQVG
Sbjct: 57  LIENCEIKAPEIAYFQEASDGTIKFAL-----TLEGGQEVESVWIPETDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C+FC T  Q   RNL+  EI+ QV    + LG          +   S  R I+N+V
Sbjct: 112 CALECTFCSTAQQGFNRNLSVSEIIGQVWRVATFLG----------LSKDSSKRPITNVV 161

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP +  +G++I V LAISL
Sbjct: 162 MMGMGEPLLNLKNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301
           HA +++LRN +VP+N+KY +E  +   R Y   S A   R+T EYVML  INDS   A  
Sbjct: 222 HAPTDELRNEIVPVNKKYNIEAFLAGVRRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQ 281

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L K+LK  P+KINLIPFNP+PG  Y CS    I  FS+ +   G+++ +R  RG DI AA
Sbjct: 282 LAKVLKDTPSKINLIPFNPYPGSPYTCSSNSRIDRFSKVLMEYGFTTVVRKTRGDDIDAA 341

Query: 362 CGQL 365
           CGQL
Sbjct: 342 CGQL 345


>gi|153208845|ref|ZP_01947069.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177']
 gi|165921447|ref|ZP_02219635.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 334]
 gi|212218666|ref|YP_002305453.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154]
 gi|254807166|sp|B6J7Q9|RLMN_COXB1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120575696|gb|EAX32320.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177']
 gi|165916762|gb|EDR35366.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 334]
 gi|212012928|gb|ACJ20308.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154]
          Length = 370

 Score =  298 bits (763), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 157/361 (43%), Positives = 221/361 (61%), Gaps = 24/361 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ +   EL+  +   G P      R +Q+ +WI+ RG+ DF  M+D+S+  R  L
Sbjct: 3   EKINLLNLSETELQGFIASQGQPL----YRATQLLQWIHQRGVTDFSLMTDLSKPFRQQL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++   +  PE+  E++S DGT KWL R     +    +IETV+IP++ RGTLCVSSQVGC
Sbjct: 59  SEASFVRVPELALERVSADGTHKWLFR-----LADNNKIETVFIPDRKRGTLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG +   RNLT  EI+ QV LA  LL                   KI+N+VM
Sbjct: 114 ALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLKS---------------PYKITNVVM 158

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N++ V  ++ +         SK R+TLSTSG +P + R+ EE  V LA+SLH
Sbjct: 159 MGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LRN+L+P+N+KY L+ LI  CR Y    + R +TFEYVM++G+ND   DA  LI+
Sbjct: 219 APNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIR 278

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  +P KINLIPFN + G  Y CS +  I  F +C+  +G+++ +R  RG DI  ACGQ
Sbjct: 279 LLADVPCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQ 338

Query: 365 L 365
           L
Sbjct: 339 L 339


>gi|239997032|ref|ZP_04717556.1| hypothetical protein AmacA2_21513 [Alteromonas macleodii ATCC
           27126]
          Length = 372

 Score =  298 bits (763), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 162/364 (44%), Positives = 218/364 (59%), Gaps = 21/364 (5%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+ + RE L     ++G        R  Q+ KWIY  GI DF+ MS++++ +R +
Sbjct: 1   MAKTNLLNLNREGLRNFFKEMG----EKPFRADQVMKWIYQHGISDFEEMSNLNKNLRAM 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++  I  PEI   + + DGT K+ L      + G  E+E+V+IPE  R TLCVSSQVG
Sbjct: 57  LIENCEIKAPEIAYFQEASDGTIKFAL-----TLEGGQEVESVWIPETDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C+FC T  Q   RNL+  EI+ QV    + LG          +   S  R I+N+V
Sbjct: 112 CALECTFCSTAQQGFNRNLSVSEIIGQVWRVATFLG----------LSKDSSKRPITNVV 161

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP +  +G++I V LAISL
Sbjct: 162 MMGMGEPLLNLKNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301
           HA +++LRN +VPIN+KY +E  +   R Y   S A   R+T EYVML  INDS   A  
Sbjct: 222 HAPTDELRNEIVPINKKYNIEAFLAGVRRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQ 281

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L K+LK  P+KINLIPFNP+PG  Y CS    I  F++ +   G+++ +R  RG DI AA
Sbjct: 282 LAKVLKDTPSKINLIPFNPYPGSPYTCSSNSRIDRFAKVLMEYGFTTVVRKTRGDDIDAA 341

Query: 362 CGQL 365
           CGQL
Sbjct: 342 CGQL 345


>gi|167623296|ref|YP_001673590.1| ribosomal RNA large subunit methyltransferase N [Shewanella
           halifaxensis HAW-EB4]
 gi|205829881|sp|B0TLI1|RLMN_SHEHH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|167353318|gb|ABZ75931.1| radical SAM enzyme, Cfr family [Shewanella halifaxensis HAW-EB4]
          Length = 373

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 168/385 (43%), Positives = 226/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L     ++G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKALRVLFTEMG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRAKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AAKCEIVAPEISSYQKSVDGTIKFAIN-----VGDGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+              D  G V  +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVAEIVGQIWR----------VADFIGFVKDTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR++LVP+N+KYPLE  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKQMQESQIS 369


>gi|163749560|ref|ZP_02156807.1| hypothetical protein KT99_16109 [Shewanella benthica KT99]
 gi|161330670|gb|EDQ01607.1| hypothetical protein KT99_16109 [Shewanella benthica KT99]
          Length = 373

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 169/385 (43%), Positives = 226/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKGLRALFTDMG----EKPFRADQLMKWIYHFGVSDFEVMTNINKVLRAKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AASCEIKAPEISSYQKSADGTIKFSIN-----VGDGQEVETVYIPEGDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV              D  G +  +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIIGQVWR----------VADFIGFIKKTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ I V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR++LVP+N+KYPL+  + + R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 AANDELRDVLVPVNKKYPLQEFLASIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGEDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|15837061|ref|NP_297749.1| hypothetical protein XF0459 [Xylella fastidiosa 9a5c]
 gi|81623829|sp|Q9PG43|RLMN_XYLFA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|9105305|gb|AAF83269.1|AE003896_6 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 406

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/371 (43%), Positives = 224/371 (60%), Gaps = 26/371 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE     +   +R+   R  Q+ KWI+ R + DF+ M+D+ + +R  L
Sbjct: 26  RKQNLLELNREGLERFFENVLGEKRY---RAHQVMKWIHHRYVSDFEQMTDVGKALRARL 82

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                +  P +V +K S DGT KWLL   A        IETVYIP+K RGTLCVSSQ+GC
Sbjct: 83  QACAEVRVPCVVFDKHSADGTHKWLL---AMDTDSKNAIETVYIPDKGRGTLCVSSQIGC 139

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 140 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 188

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   S +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 189 MGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 248

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+ +C  Y  ++  R  +TFEY ++KG+ND    A  L+
Sbjct: 249 APNDKLREQLVPLNKKYPIAELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELV 308

Query: 304 KILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           K+++           AK+NLIPFNP+PG  Y  S + DI  F + +  +   + +R  RG
Sbjct: 309 KLMRQFDCAMQVKGAAKVNLIPFNPFPGTYYERSTEVDIRAFQKILLDAQILAMVRRTRG 368

Query: 356 LDILAACGQLK 366
            DI AACGQLK
Sbjct: 369 DDIDAACGQLK 379


>gi|238020955|ref|ZP_04601381.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
 gi|237867935|gb|EEP68941.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
          Length = 366

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 207/333 (62%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G + F  M+D+++ +R  L  +  I  P ++  + S DGTRKWLL  
Sbjct: 25  FRAKQVMRWIHQSGAQTFDEMTDLAKALRAKLEDNAVIGIPALMTSQESRDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   LG           V P   R ISN+VMMGMGEP+ N+DNV  +LSI  D  G   
Sbjct: 140 WANKALG-----------VTPKNERVISNVVMMGMGEPMANYDNVITALSIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ +++ V LA+SLHA ++ +R+ +VP+N+KYPL+ L+ AC  
Sbjct: 189 SRRRVTVSTSGMVPQMDRLKDDMPVALAVSLHASNDKVRDEIVPLNKKYPLKELMAACNR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GIND P  A  L++++K  P K NLIPFNP+P   Y  S  K
Sbjct: 249 YLAKAPRDFITFEYVMLDGINDKPEHARELVQLVKDTPCKFNLIPFNPFPNSGYERSSNK 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F E +  +   + +R  RG DI AACGQL
Sbjct: 309 NINIFKEILMEADLVTTVRKTRGDDIDAACGQL 341


>gi|29654554|ref|NP_820246.1| radical SAM protein [Coxiella burnetii RSA 493]
 gi|154706747|ref|YP_001424689.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111]
 gi|161830060|ref|YP_001597102.1| radical SAM protein [Coxiella burnetii RSA 331]
 gi|81628860|sp|Q83C77|RLMN_COXBU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829741|sp|A9KFV0|RLMN_COXBN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829742|sp|A9NDW2|RLMN_COXBR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|29541821|gb|AAO90760.1| radical SAM family enzyme [Coxiella burnetii RSA 493]
 gi|154356033|gb|ABS77495.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111]
 gi|161761927|gb|ABX77569.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 331]
          Length = 370

 Score =  297 bits (761), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 157/361 (43%), Positives = 221/361 (61%), Gaps = 24/361 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ +   EL+  +   G P      R +Q+ +WI+ RG+ DF  M+D+S+  R  L
Sbjct: 3   EKINLLNLSEPELQGFIASQGQPL----YRATQLLQWIHQRGVTDFSLMTDLSKPFRQQL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++   +  PE+  E++S DGT KWL R     +    +IETV+IP++ RGTLCVSSQVGC
Sbjct: 59  SEASFVRVPELALERVSADGTHKWLFR-----LADNNKIETVFIPDRKRGTLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG +   RNLT  EI+ QV LA  LL                   KI+N+VM
Sbjct: 114 ALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLKS---------------PYKITNVVM 158

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N++ V  ++ +         SK R+TLSTSG +P + R+ EE  V LA+SLH
Sbjct: 159 MGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LRN+L+P+N+KY L+ LI  CR Y    + R +TFEYVM++G+ND   DA  LI+
Sbjct: 219 APNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIR 278

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  +P KINLIPFN + G  Y CS +  I  F +C+  +G+++ +R  RG DI  ACGQ
Sbjct: 279 LLADVPCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQ 338

Query: 365 L 365
           L
Sbjct: 339 L 339


>gi|170725898|ref|YP_001759924.1| ribosomal RNA large subunit methyltransferase N [Shewanella woodyi
           ATCC 51908]
 gi|205829887|sp|B1KKI9|RLMN_SHEWM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|169811245|gb|ACA85829.1| radical SAM enzyme, Cfr family [Shewanella woodyi ATCC 51908]
          Length = 373

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 169/385 (43%), Positives = 226/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L     ++G        R  Q+ KWIY  G+ DF  M++I++ +R  L
Sbjct: 4   KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWIYHFGVSDFDEMNNINKALRAKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N    I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  NARCEIVAPEISSFQKSEDGTIKFAIN-----VGQGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV              D  G V  +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIIGQVWR----------VADFIGFVKETGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+T+STSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR++LVP+N+KYPLE  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   Q+ QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQDSQIS 369


>gi|114320405|ref|YP_742088.1| radical SAM protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|122941195|sp|Q0A989|RLMN_ALHEH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|114226799|gb|ABI56598.1| 23S rRNA m(2)A-2503 methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 360

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 155/356 (43%), Positives = 218/356 (61%), Gaps = 23/356 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +Q+ KW++ R +  F+ M+DIS+ +R  L +  ++  PE++ E++S DGTRKWLLR 
Sbjct: 23  FRATQVLKWVHQRRVTGFEEMTDISKALRARLAERVALRLPEVLAEQVSEDGTRKWLLR- 81

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               + G   IETV+IP+  RGTLCVSSQVGC+L CSFC T  Q   RNL+  EI+ Q  
Sbjct: 82  ----VDGGQAIETVFIPDSGRGTLCVSSQVGCALDCSFCSTAQQGFNRNLSTAEIIGQYY 137

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   L                 G +I+N+V MGMGEPL N + V  ++ + +D      
Sbjct: 138 VAYDQL--------------TGTGEQITNVVFMGMGEPLLNLEAVIPAVRLMTDDDAYGL 183

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           SKR++T+STSG V  + R+ E+  V LA+SLHA +N LR+ LVPINRK+PLE LI AC  
Sbjct: 184 SKRKVTISTSGVVTMLERMREQTDVSLAVSLHAPNNALRDELVPINRKHPLERLIPACAA 243

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y      RRIT+EYVML G+ND    A  L ++L  IP+K+NLIPFNP+PG  Y CS + 
Sbjct: 244 YIADKPHRRITWEYVMLDGVNDQDHHAHELARLLGDIPSKVNLIPFNPFPGARYRCSPRG 303

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQEMQITG 384
            I+ F   ++  G ++  R  RG DI  ACGQL    +  ++R  ++ ++E++  G
Sbjct: 304 RILRFVRILQSHGLTATTRVTRGQDIDGACGQLVGKVQDRTRRQQRLVQRELRREG 359


>gi|212212364|ref|YP_002303300.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212]
 gi|254807167|sp|B6IZM7|RLMN_COXB2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|212010774|gb|ACJ18155.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212]
          Length = 370

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/361 (43%), Positives = 221/361 (61%), Gaps = 24/361 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ +   EL+  +   G P      R +Q+ +WI+ RG+ DF  M+D+S+  R  L
Sbjct: 3   EKINLLNLSEPELQGFIASQGQPL----YRATQLLQWIHQRGVTDFSLMTDLSKPFRQQL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++   +  PE+  E++S DGT KWL R     +    +IETV+IP++ RGTLCVSSQVGC
Sbjct: 59  SEASFVRVPELALERVSADGTHKWLFR-----LADNNKIETVFIPDRKRGTLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG +   RNLT  EI+ QV LA  LL                   KI+N+VM
Sbjct: 114 ALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLKS---------------PYKITNVVM 158

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N++ V  ++ +         SK R+TLSTSG +P + R+ EE  V LA+SLH
Sbjct: 159 MGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LRN+L+P+N+KY L+ LI  CR Y    + R +TFEYVM++G+ND   DA  LI+
Sbjct: 219 APNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKRLIR 278

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  +P KINLIPFN + G  Y CS +  I  F +C+  +G+++ +R  RG DI  ACGQ
Sbjct: 279 LLADVPCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQ 338

Query: 365 L 365
           L
Sbjct: 339 L 339


>gi|126175195|ref|YP_001051344.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
           OS155]
 gi|205829878|sp|A3D6W2|RLMN_SHEB5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|125998400|gb|ABN62475.1| radical SAM enzyme, Cfr family [Shewanella baltica OS155]
          Length = 373

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 168/385 (43%), Positives = 225/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KW+Y  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADMG----EKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSFQKSTDGTIKFAIN-----VGQGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG Q   RNLT  EI+ Q+      LG              +  R I+N+VM
Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ I V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVPIN+KY L+  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPINKKYQLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|119505391|ref|ZP_01627465.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
           HTCC2080]
 gi|119458846|gb|EAW39947.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
           HTCC2080]
          Length = 388

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/362 (42%), Positives = 220/362 (60%), Gaps = 21/362 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R++LE+    +G      R R  Q+ KW++ +G+ DF  MS++ + +R  L 
Sbjct: 16  KVNLLGLSRQQLEDFFTDLG----EKRFRAQQVMKWMHHQGVIDFAAMSNLGKGLREKLE 71

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              +I  PEI D++ S DGTRKW +R     + G   +E V IPE  R TLCVSSQVGCS
Sbjct: 72  TLATITPPEIADQQDSADGTRKWAVR-----VAGGALVEAVLIPEAGRATLCVSSQVGCS 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC TG Q   R+LTA EI+ QV LA   +  + G +          GR ++N+VMM
Sbjct: 127 LDCKFCSTGKQGFQRDLTAAEIIGQVWLA---INSYSGWQ-------SGKGRIVTNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++S+ +D +    SKR++TLSTSG VP + R+ E   V LA+SLHA
Sbjct: 177 GMGEPLLNFDNVVSAMSLMTDDLAYGLSKRKVTLSTSGVVPALDRLAEFSDVSLAVSLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303
            ++++RN +VPINR+YP++ L+ + + Y    + R+  +T EY +L G+ND P  A  L 
Sbjct: 237 PNDEIRNKIVPINRRYPIQQLLQSAKSYIDAQSDRKRVVTIEYTLLAGVNDQPEHARELS 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LK  P KINLIPFN +P   +       +  F + +  +G+   +R+ RG DI AACG
Sbjct: 297 TLLKDFPCKINLIPFNHFPNSGFDRPSGNAVSRFWQVLVDAGFIVTVRSTRGDDIDAACG 356

Query: 364 QL 365
           QL
Sbjct: 357 QL 358


>gi|205829898|sp|A1RHQ0|RLMN_SHESW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|319427125|gb|ADV55199.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens 200]
          Length = 373

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 167/385 (43%), Positives = 224/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSFQKSTDGTIKFAIH-----VGEGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG      D          R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGD----------RPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL+  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|294140143|ref|YP_003556121.1| hypothetical protein SVI_1372 [Shewanella violacea DSS12]
 gi|293326612|dbj|BAJ01343.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 379

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 171/386 (44%), Positives = 225/386 (58%), Gaps = 27/386 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 10  KKINLLDLDRKGLRALFTDMG----EKPFRADQLMKWIYHFGVSDFELMTNINKGLRAKL 65

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  P+I   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 66  AARCEITAPQISSYQKSEDGTIKFAIN-----VGDGQEVETVYIPEGDRATLCVSSQVGC 120

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIV 183
           +L C+FC T  Q   RNLT  EI+ QV      +G            I   G R I+N+V
Sbjct: 121 ALECTFCSTAQQGFNRNLTVSEIIGQVWRVADFIG-----------FIKDTGERPITNVV 169

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP +  +G+ I V LA+S+
Sbjct: 170 MMGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDAIDVALAVSI 229

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301
           HA +++LR++LVP+N+KYPLE  + A R Y   SNA   R+T EYVML  INDS   A  
Sbjct: 230 HAANDELRDVLVPVNKKYPLEEFLAAIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHE 289

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L K++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G++  +R  RG DI AA
Sbjct: 290 LAKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAA 349

Query: 362 CGQL----KSLSKRIPKVPRQEMQIT 383
           CGQL    +  +KR+ K   QE QI+
Sbjct: 350 CGQLAGDIRDRTKRLAKKRMQENQIS 375


>gi|157961130|ref|YP_001501164.1| ribosomal RNA large subunit methyltransferase N [Shewanella
           pealeana ATCC 700345]
 gi|205829883|sp|A8H242|RLMN_SHEPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157846130|gb|ABV86629.1| radical SAM enzyme, Cfr family [Shewanella pealeana ATCC 700345]
          Length = 373

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/385 (43%), Positives = 226/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L     ++G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKALRALFTEMG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRAKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AAKCEIVAPEISSYQKSVDGTIKFAIN-----VGDGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+              D  G V  +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVAEIVGQIWR----------VADFIGFVKDTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDVLDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR++LVP+N+KYPLE  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   Q+ QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKQMQQNQIS 369


>gi|198283710|ref|YP_002220031.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198248231|gb|ACH83824.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 363

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 219/361 (60%), Gaps = 26/361 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++  L+G+ R+ L + L   G        R +QI +W++ R + DF  M+DIS+ +R  L
Sbjct: 12  ERPHLLGLGRQSLAKLLRTWG----ESPFRANQILQWLHTRQVTDFAAMTDISKTLRARL 67

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PEI+ ++ + D TRKWLLR P         IETV+IP + RGTLC+SSQVGC
Sbjct: 68  AAETRIDMPEIIADQTAADCTRKWLLRLP-----DGNAIETVFIPGEDRGTLCISSQVGC 122

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q L RNL   EI+ QV +AR    DF G +             I+NIV 
Sbjct: 123 SLACSFCATGAQGLSRNLETHEIIAQVRVAR----DFLGLD------------AITNIVF 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEP+ N   V  +L +  D     F  RRIT+ST+G VP + R+G E  V LAISLH
Sbjct: 167 MGMGEPMLNLREVLPALDLLRDDYAYGFGARRITVSTAGVVPGMDRLGAESPVNLAISLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  +++R+ILVP+NR YPL  L+ ACR Y  L   RRITFEYVML+G+ND+   A  L++
Sbjct: 227 ASRDEIRDILVPVNRHYPLAELLAACRRY-PLPPRRRITFEYVMLEGVNDADSHARELLR 285

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ IPA +NLIPFNP+PG +Y  S Q  I  F + I R    +  R PRG DI AACGQ
Sbjct: 286 LLRDIPAMVNLIPFNPFPGSDYKRSPQVRIDAFRDIILRGNVMTVTRRPRGDDIAAACGQ 345

Query: 365 L 365
           L
Sbjct: 346 L 346


>gi|332992286|gb|AEF02341.1| ribosomal RNA large subunit methyltransferase N [Alteromonas sp.
           SN2]
          Length = 372

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 161/364 (44%), Positives = 218/364 (59%), Gaps = 21/364 (5%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+ + RE L     + G        R  Q+ KWIY +G  DF+ MS++++ +R +
Sbjct: 1   MAKTNLLNLNREGLRNFFKEKG----EKPFRADQVMKWIYQQGESDFEKMSNLNKNLRAM 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +H  +  PEI   + + DGT K+ L      + G  E+ETV+IPE  R TLCVSSQVG
Sbjct: 57  LIEHCEVKAPEIAYFQEASDGTIKFAL-----ALEGGQEVETVWIPEADRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C+FC T  Q   RNL+  EI+ QV    + LG          +   +  R I+N+V
Sbjct: 112 CALECTFCSTAQQGFNRNLSVSEIIGQVWRVATFLG----------LSKDTSKRPITNVV 161

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N  NV  +++I  D  G   SKRR+TLSTSG VP +  +G++I V LAISL
Sbjct: 162 MMGMGEPLLNLKNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALN 301
           HA +++LRN +VP+N+KY +E  +   R Y     +N  R+T EYVML  INDS   A  
Sbjct: 222 HAPNDELRNEIVPVNKKYNIEAFLAGVRRYLEKSKANQGRVTVEYVMLSHINDSTDQAHE 281

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L K+LK  P KINLIPFNP+PG  YLCS    I  FS+ +   G+++ +R  RG DI AA
Sbjct: 282 LAKVLKDTPCKINLIPFNPYPGSPYLCSSNSRIDRFSKVLMDYGFTTVVRKTRGDDIDAA 341

Query: 362 CGQL 365
           CGQL
Sbjct: 342 CGQL 345


>gi|253996236|ref|YP_003048300.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8]
 gi|253982915|gb|ACT47773.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8]
          Length = 367

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 150/333 (45%), Positives = 208/333 (62%), Gaps = 10/333 (3%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G+ DF+ M+DI++ +R  L     I  P +   ++S DGTRKWL+  
Sbjct: 24  FRAKQLMRWMHHFGVHDFEQMTDIAKNLREKLAVDAEITLPTVQLAQVSNDGTRKWLI-- 81

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                     IETV+IPE  RGTLCVSSQVGC+L C+FC TG Q   RNL+  EI+ QV 
Sbjct: 82  ---GTDTANSIETVFIPEDDRGTLCVSSQVGCALECTFCSTGRQGFNRNLSVAEIIGQVA 138

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   L   PG +     ++P+  R ISN+VMMGMGEPL N+DNV  ++ I  D      
Sbjct: 139 IANQTLRQEPGYD-----MLPANDRIISNVVMMGMGEPLANYDNVVTAMQIMLDDSAYGL 193

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+TLSTSG VP + R+ E+  V LA+SLHA ++ LR+++VPIN+KYPL+ L+ AC  
Sbjct: 194 SRRRVTLSTSGMVPAMDRLKEDCPVALAVSLHAPNDALRDVIVPINKKYPLKELMAACNR 253

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    +TFEYVML G+ND+   A  L++++K +  K NLIPFNP+P   Y  S   
Sbjct: 254 YLEKAPRDFVTFEYVMLDGVNDTVEHAHQLLELVKNVSCKFNLIPFNPFPNSGYDTSKPN 313

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +  F + + ++GY   +R  RG DI AACGQL
Sbjct: 314 HVRVFRDILMQAGYVVTVRKTRGDDIDAACGQL 346


>gi|218666070|ref|YP_002426339.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218518283|gb|ACK78869.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 362

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 219/361 (60%), Gaps = 26/361 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++  L+G+ R+ L + L   G        R +QI +W++ R + DF  M+DIS+ +R  L
Sbjct: 11  ERPHLLGLGRQSLAKLLRTWG----ESPFRANQILQWLHTRQVTDFAAMTDISKTLRARL 66

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PEI+ ++ + D TRKWLLR P         IETV+IP + RGTLC+SSQVGC
Sbjct: 67  AAETRIDMPEIIADQTAADCTRKWLLRLP-----DGNAIETVFIPGEDRGTLCISSQVGC 121

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q L RNL   EI+ QV +AR    DF G +             I+NIV 
Sbjct: 122 SLACSFCATGAQGLSRNLETHEIIAQVRVAR----DFLGLD------------AITNIVF 165

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEP+ N   V  +L +  D     F  RRIT+ST+G VP + R+G E  V LAISLH
Sbjct: 166 MGMGEPMLNLREVLPALDLLRDDYAYGFGARRITVSTAGVVPGMDRLGAESPVNLAISLH 225

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  +++R+ILVP+NR YPL  L+ ACR Y  L   RRITFEYVML+G+ND+   A  L++
Sbjct: 226 ASRDEIRDILVPVNRHYPLAELLAACRRY-PLPPRRRITFEYVMLEGVNDADSHARELLR 284

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ IPA +NLIPFNP+PG +Y  S Q  I  F + I R    +  R PRG DI AACGQ
Sbjct: 285 LLRDIPAMVNLIPFNPFPGSDYKRSPQVRIDAFRDIILRGNVMTVTRRPRGDDIAAACGQ 344

Query: 365 L 365
           L
Sbjct: 345 L 345


>gi|326794512|ref|YP_004312332.1| ribosomal RNA large subunit methyltransferase N [Marinomonas
           mediterranea MMB-1]
 gi|326545276|gb|ADZ90496.1| Ribosomal RNA large subunit methyltransferase N [Marinomonas
           mediterranea MMB-1]
          Length = 373

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 164/367 (44%), Positives = 221/367 (60%), Gaps = 20/367 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M+  +K +L+G+  E+L E    IG      + R +Q+ KWI+ +G   F+ M+D+S+++
Sbjct: 1   MSATQKVNLLGLSPEKLVEFFESIG----EKKFRATQVMKWIHQKGAESFEEMTDVSKKL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVS 119
           R  L     I  PEIV++ IS DGTRKW++R      GG  + +ETV IP+  R TLCVS
Sbjct: 57  RAKLEGICEIRAPEIVEQNISTDGTRKWIIRTE----GGMNDCVETVLIPDGDRATLCVS 112

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGCSL CSFC TG Q   RNLT  EI+ Q+ +A    G             P+  R++
Sbjct: 113 SQVGCSLDCSFCSTGKQGFNRNLTPAEIIGQLWIAIKSFGPMD----------PNGPRRV 162

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL NF+ V  ++ +         SKRR+TLSTSG VP I  + +   V L
Sbjct: 163 TNVVMMGMGEPLMNFEPVVDAMILMMHDNAYGLSKRRVTLSTSGVVPKIYELVKRTDVSL 222

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRD 298
           AISLHA +N LR+ LVPINRKYP+E L++AC+HY   L + R IT EY M+ G+ND  + 
Sbjct: 223 AISLHAPNNPLRDELVPINRKYPIEELLEACQHYLDNLPDKRHITIEYTMMAGVNDQEQH 282

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L  +LK +  K+NLIPFNP+P   Y          F + +   GY+  +RT RG DI
Sbjct: 283 ARELAHLLKDLECKVNLIPFNPFPHSGYEKPSNNQTRRFQKILADDGYTVTVRTTRGDDI 342

Query: 359 LAACGQL 365
            AACGQL
Sbjct: 343 DAACGQL 349


>gi|114562291|ref|YP_749804.1| hypothetical protein Sfri_1113 [Shewanella frigidimarina NCIMB 400]
 gi|122300423|sp|Q085U9|RLMN_SHEFN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|114333584|gb|ABI70966.1| radical SAM enzyme, Cfr family protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 373

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 169/386 (43%), Positives = 227/386 (58%), Gaps = 25/386 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KK +L+ + R+ L     ++G        R  Q+ KW+Y  G+ DF+ M++I++ +R  
Sbjct: 3   VKKINLLDLDRKGLRALFSEMG----EKPFRADQLMKWVYHFGVTDFEEMNNINKVLRTK 58

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L     I+ PEI   + S DGT K+ +      +G   E+ETVYIPE+ R TLCVSSQVG
Sbjct: 59  LAAKCEIVAPEIASFQKSNDGTIKFAIN-----VGQGQEVETVYIPEEDRATLCVSSQVG 113

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C+FC TG Q   RNLT  EI+ QV      LG      D          R ISN+V
Sbjct: 114 CALECTFCSTGQQGFNRNLTVSEIIGQVWRVSQFLGFHKDTGD----------RPISNVV 163

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ I V LA+S+
Sbjct: 164 MMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSI 223

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301
           HA +++LR++LVP+N+KYPL+  +   R Y   SNA   R+T EYVML  INDS   A  
Sbjct: 224 HAPNDELRDVLVPVNKKYPLQEFLAGIRRYLEKSNANRGRVTVEYVMLDHINDSTDQAHE 283

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  ++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AA
Sbjct: 284 LAILMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEHGLTVIVRKTRGDDIDAA 343

Query: 362 CGQL----KSLSKRIPKVPRQEMQIT 383
           CGQL    +  +KR+ K   Q+ QI+
Sbjct: 344 CGQLAGDIRDRTKRLAKKQMQQNQIS 369


>gi|221133865|ref|ZP_03560170.1| hypothetical protein GHTCC_02964 [Glaciecola sp. HTCC2999]
          Length = 389

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 159/363 (43%), Positives = 214/363 (58%), Gaps = 21/363 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R  + E L  IG        R  QI +WIY  G+     MS+I+++++  L
Sbjct: 18  KKTNLLDLTRSGMREFLSSIG----EKPFRADQIMQWIYHHGVSSVDEMSNINKQLKAKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N H  I+ PEI  ++ + DGT K+ L      + G  E+E V+IPE  R TLCVSSQVGC
Sbjct: 74  NTHAEIVAPEIAYQQNATDGTIKFAL-----TLNGGQEVEAVWIPETDRATLCVSSQVGC 128

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL+  EI+ QV    + +G          +   +  R I+N+VM
Sbjct: 129 ALECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIG----------LSKDTAKRPITNVVM 178

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ +  D  G   SKRR+TLSTSG VP +  +G++I V LAISLH
Sbjct: 179 MGMGEPLLNLKNVVPAMELMMDDYGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLH 238

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ LR+ +VP+N+KY +E  +   R Y   S A   ++T EYVML  INDS   A  L
Sbjct: 239 APNDTLRDEIVPVNKKYNIETFLAGVRRYLDKSKANQGKVTVEYVMLSHINDSTDQAHEL 298

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+L G P KINLIPFNP+PG  Y CS    I  FS+ +  +GY+  +R  RG DI AAC
Sbjct: 299 AKVLSGTPCKINLIPFNPYPGSPYTCSSNSRIDRFSKVLMAAGYTVMVRKTRGDDIDAAC 358

Query: 363 GQL 365
           GQL
Sbjct: 359 GQL 361


>gi|332288518|ref|YP_004419370.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
           anatis UMN179]
 gi|330431414|gb|AEC16473.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
           anatis UMN179]
          Length = 372

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 165/363 (45%), Positives = 217/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+   L  +G        R  QI KWIY  G  +F  M++I++ +R  L
Sbjct: 4   EKTNLLNLTRQEMRHFLADLG----EKPFRADQIMKWIYHYGEDNFDNMTNINKVLREKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PEI  E+ S DGT KW ++       G  +IE+VYIPE  R TLCVSSQVGC
Sbjct: 60  KQVAEIKAPEIAVEQRSFDGTIKWAMQV------GDQQIESVYIPEADRATLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G F      E  V P     I+N+VM
Sbjct: 114 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKVIGAFG-----ETKVRP-----ITNVVM 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++GE I V LAISLH
Sbjct: 164 MGMGEPLLNVSNVVPAMEIMLDDFGYGLSKRRVTLSTSGVVPALDKLGEMIDVALAISLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LRN +VP+N+KY +EML+D+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 224 APNDELRNEIVPLNKKYNIEMLMDSVNRYLKISNANHGKVTIEYVMLDHVNDEVEHAHQL 283

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+LK  P KINLIP+NP+P   Y  S    I  F + +   G++  +R  RG DI AAC
Sbjct: 284 AKVLKNTPCKINLIPWNPFPEAPYNKSSNTRIDRFQKTLMEYGFTVIVRKTRGDDIDAAC 343

Query: 363 GQL 365
           GQL
Sbjct: 344 GQL 346


>gi|92114968|ref|YP_574896.1| hypothetical protein Csal_2851 [Chromohalobacter salexigens DSM
           3043]
 gi|123387343|sp|Q1QTL1|RLMN_CHRSD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|91798058|gb|ABE60197.1| 23S rRNA m(2)A-2503 methyltransferase [Chromohalobacter salexigens
           DSM 3043]
          Length = 375

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 157/363 (43%), Positives = 221/363 (60%), Gaps = 22/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + +L+G+ REE+E   + +G      + R +Q+ KWI+  G  DF  M+++S+ +R  L 
Sbjct: 9   RTNLLGLTREEMESFFVSLG----EKKFRAAQVMKWIHHEGCADFASMTNLSKALRTRLE 64

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123
           +   I  P +V E  S DGTRKW+L      +     +ETV IP +   R TLCVSSQVG
Sbjct: 65  ELAEIRGPRVVYEGTSQDGTRKWVLE-----VEDGSYVETVLIPAEGGKRRTLCVSSQVG 119

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL CSFC TG Q   RNLT+ EI+ QV +A +  G              +  R ++N+V
Sbjct: 120 CSLDCSFCSTGKQGFQRNLTSAEIIGQVWVASNSFG----------ARRDTTNRPVTNVV 169

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N+DNV  ++ +  D  G   SKRR+TLSTSG VP + ++G+E+ V LA+SL
Sbjct: 170 MMGMGEPLLNYDNVVPAMKLMLDDNGYGLSKRRVTLSTSGVVPKLDQLGDELDVSLAVSL 229

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNL 302
           HA +++LRN LVP+NRKY +  L+DACR Y     + R +T EY ++K +ND    A  L
Sbjct: 230 HAANDELRNELVPLNRKYNIATLLDACRRYLAKCDDTRMLTIEYTLIKDVNDQQHHAEEL 289

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +L  +P+KINLIPFNP+P   Y    +  ++ F + +   GY++ +RT RG DI AAC
Sbjct: 290 AALLADLPSKINLIPFNPFPHSGYEKPSRNQVMRFQQWLYDLGYTALVRTTRGDDIDAAC 349

Query: 363 GQL 365
           GQL
Sbjct: 350 GQL 352


>gi|197285703|ref|YP_002151575.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
           HI4320]
 gi|227356214|ref|ZP_03840603.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906]
 gi|254807194|sp|B4EZT6|RLMN_PROMH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|194683190|emb|CAR43831.1| radical SAM superfamily protein [Proteus mirabilis HI4320]
 gi|227163678|gb|EEI48594.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906]
          Length = 393

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 166/388 (42%), Positives = 225/388 (57%), Gaps = 33/388 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +N   K +L+ + R+++ E  + +G        R  QI KWIY     DF  M+DI++ +
Sbjct: 21  VNQKTKINLLDLNRKQMRELFVSMG----EKPFRADQIMKWIYHYCYDDFDQMTDINKVL 76

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSS
Sbjct: 77  RAKLKEIAEIKAPEVSEEQRSADGTIKWAIKV------GSQQVETVYIPEDDRATLCVSS 130

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-I 179
           QVGC+L C FC T  Q   RNL   EI+ QV  A  ++G            +   GR+ I
Sbjct: 131 QVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAKIIG-----------ALKETGRRPI 179

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N +NV  +L I  D  G   SKRR+T+STSG VP + ++ + + V L
Sbjct: 180 TNVVMMGMGEPLLNLNNVIPALEIMMDDFGFGLSKRRVTVSTSGVVPALDKLADAVDVAL 239

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPR 297
           AISLHA ++D+R+ +VPIN+KY +EM +D  R Y   SNA   R+T EYVML  INDS  
Sbjct: 240 AISLHAPTDDIRDEIVPINKKYNIEMFLDGVRRYIAKSNANQGRVTVEYVMLDHINDSTE 299

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L + LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG D
Sbjct: 300 QAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDD 359

Query: 358 ILAACGQL---------KSLSKRIPKVP 376
           I AACGQL         ++L KR+   P
Sbjct: 360 IDAACGQLAGDVIDRTKRTLKKRLQGEP 387


>gi|120598175|ref|YP_962749.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
           W3-18-1]
 gi|120558268|gb|ABM24195.1| radical SAM enzyme, Cfr family [Shewanella sp. W3-18-1]
          Length = 399

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 167/385 (43%), Positives = 224/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 30  KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 85

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 86  AARCEIVAPEISSFQKSTDGTIKFAIH-----VGEGQEVETVYIPEDDRATLCVSSQVGC 140

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG      D          R I+N+VM
Sbjct: 141 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGD----------RPITNVVM 190

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 191 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 250

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL+  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 251 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 310

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 311 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 370

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 371 GQLAGDIRDRTKRLAKKRMQENQIS 395


>gi|91775976|ref|YP_545732.1| hypothetical protein Mfla_1623 [Methylobacillus flagellatus KT]
 gi|123078840|sp|Q1H0U6|RLMN_METFK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|91709963|gb|ABE49891.1| 23S rRNA m(2)A-2503 methyltransferase [Methylobacillus flagellatus
           KT]
          Length = 362

 Score =  295 bits (756), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 207/333 (62%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G+ DF  M+DI++ +R  L +   +  P +  E+IS DGTRKWL+  
Sbjct: 25  FRAKQMMRWMHHFGVSDFGEMTDIAKALREKLAKEAVVAPPSVHLEQISEDGTRKWLID- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLCVSSQVGC+L C+FC TG Q   RNL+  EI+ Q+ 
Sbjct: 84  ----VGAGNGVETVFIPEDDRGTLCVSSQVGCALDCTFCSTGRQGFNRNLSVSEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   LG  P  +           R ISN+VMMGMGEPL NFDNV  +++I  D      
Sbjct: 140 VANKALGRDPKGD-----------RIISNVVMMGMGEPLANFDNVVAAMNIMLDDSAYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+TLSTSG VP + R+ EE  V LA+SLHA ++ LR+ +VPINRKYP+  L+ AC+ 
Sbjct: 189 SRRRVTLSTSGMVPAMDRLREECPVALAVSLHAPNDALRDEIVPINRKYPIAQLMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    +TFEYVML G+ND+   A  L+ I++ +P K NLIPFNP+P   Y  S   
Sbjct: 249 YLEKAPRDFVTFEYVMLDGVNDTAEHARQLLNIVQDVPCKFNLIPFNPFPNSGYDTSKPD 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + + ++GY    R  RG DI AACGQL
Sbjct: 309 NIRRFRDILMQAGYVVTTRKTRGEDIDAACGQL 341


>gi|146293751|ref|YP_001184175.1| ribosomal RNA large subunit methyltransferase N [Shewanella
           putrefaciens CN-32]
 gi|205829884|sp|A4Y8U3|RLMN_SHEPC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145565441|gb|ABP76376.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens CN-32]
          Length = 373

 Score =  295 bits (756), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 166/385 (43%), Positives = 224/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSFQKSTDGTIKFAIH-----VGEGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG      D          R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGD----------RPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL+  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+++  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AKLMEDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|182682234|ref|YP_001830394.1| radical SAM protein [Xylella fastidiosa M23]
 gi|182632344|gb|ACB93120.1| radical SAM enzyme, Cfr family [Xylella fastidiosa M23]
          Length = 401

 Score =  295 bits (756), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 160/374 (42%), Positives = 224/374 (59%), Gaps = 26/374 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           +  +K++L+ + RE LE     +   +R+   R  Q+ KWI+ R + DF+ M+D+ + +R
Sbjct: 18  DVARKQNLLELDREGLERFFEDVLGEKRY---RAHQVMKWIHHRYVADFEQMTDVGKALR 74

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L     +  P +V +K S DGT KWLL   A        IETVYIP+K RGTLCVSSQ
Sbjct: 75  TRLQACAEVRVPRVVFDKHSADGTHKWLL---AMGTDRKNAIETVYIPDKGRGTLCVSSQ 131

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           +GC L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N
Sbjct: 132 IGCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTN 180

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL NFDNV +++S+  D +G   S +R+TLSTSG VP I R+  E  V LA+
Sbjct: 181 VVMMGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDAL 300
           SLHA ++ LR  LVP+N+KYP+  L+ +C  Y  ++  R  +TFEY ++KG+ND    A 
Sbjct: 241 SLHAPNDKLREQLVPLNKKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAH 300

Query: 301 NLIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
            L K+++           AK+NLIPFNP+PG  Y  S + DI  F + +  +   + +R 
Sbjct: 301 ELAKLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRR 360

Query: 353 PRGLDILAACGQLK 366
            RG DI AACGQLK
Sbjct: 361 TRGDDIDAACGQLK 374


>gi|28199501|ref|NP_779815.1| hypothetical protein PD1624 [Xylella fastidiosa Temecula1]
 gi|81585666|sp|Q87B36|RLMN_XYLFT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829942|sp|B2I7V5|RLMN_XYLF2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|28057616|gb|AAO29464.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|307578508|gb|ADN62477.1| hypothetical protein XFLM_02390 [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 406

 Score =  295 bits (755), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 160/374 (42%), Positives = 224/374 (59%), Gaps = 26/374 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           +  +K++L+ + RE LE     +   +R+   R  Q+ KWI+ R + DF+ M+D+ + +R
Sbjct: 23  DVARKQNLLELDREGLERFFEDVLGEKRY---RAHQVMKWIHHRYVADFEQMTDVGKALR 79

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L     +  P +V +K S DGT KWLL   A        IETVYIP+K RGTLCVSSQ
Sbjct: 80  TRLQACAEVRVPRVVFDKHSADGTHKWLL---AMGTDRKNAIETVYIPDKGRGTLCVSSQ 136

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           +GC L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N
Sbjct: 137 IGCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTN 185

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL NFDNV +++S+  D +G   S +R+TLSTSG VP I R+  E  V LA+
Sbjct: 186 VVMMGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAV 245

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDAL 300
           SLHA ++ LR  LVP+N+KYP+  L+ +C  Y  ++  R  +TFEY ++KG+ND    A 
Sbjct: 246 SLHAPNDKLREQLVPLNKKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAH 305

Query: 301 NLIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
            L K+++           AK+NLIPFNP+PG  Y  S + DI  F + +  +   + +R 
Sbjct: 306 ELAKLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRR 365

Query: 353 PRGLDILAACGQLK 366
            RG DI AACGQLK
Sbjct: 366 TRGDDIDAACGQLK 379


>gi|225024692|ref|ZP_03713884.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
           23834]
 gi|224942581|gb|EEG23790.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
           23834]
          Length = 363

 Score =  295 bits (755), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 150/333 (45%), Positives = 210/333 (63%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++     DF  M+D+++ +R  LN+   +  P ++  + S DGTRKWLL  
Sbjct: 25  FRARQVMRWMHQGAAGDFDEMTDLAKSLRAKLNESAQVGVPALMAAQESRDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNL+  EI+ Q+ 
Sbjct: 84  ----VGTGNGVETVFIPETDRGTLCISSQVGCALECTFCSTGRQGFNRNLSTAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   LG  P  E           R ISN+VMMGMGEPL N+DNV  +LSI  D  G + 
Sbjct: 140 WANKALGATPKDE-----------RVISNVVMMGMGEPLANYDNVVTALSIMLDDHGYAL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ E++ V LA+SLHA ++ +RN +VP+N+KYPL+ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHAPNDAIRNEIVPLNKKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    +TFEYVML G+ND P  A  L++++K +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLVKAPRDFVTFEYVMLDGVNDKPEHARELLELVKDVPCKFNLIPFNPFPNSGYNRSSDE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +I  F + + ++G    +R  RG DI AACGQL
Sbjct: 309 NIRVFRDILYQAGLVVTVRKTRGDDIDAACGQL 341


>gi|113969569|ref|YP_733362.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
           MR-4]
 gi|122943998|sp|Q0HKW2|RLMN_SHESM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|113884253|gb|ABI38305.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-4]
          Length = 373

 Score =  295 bits (755), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 165/385 (42%), Positives = 224/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSYQKSADGTIKFAIH-----VGEGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG              +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL+  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|296113393|ref|YP_003627331.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
 gi|295921087|gb|ADG61438.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
 gi|326559237|gb|EGE09668.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1]
 gi|326560775|gb|EGE11142.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1]
 gi|326563516|gb|EGE13775.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1]
 gi|326570119|gb|EGE20164.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8]
 gi|326570857|gb|EGE20881.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7]
 gi|326574406|gb|EGE24348.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1]
 gi|326576000|gb|EGE25923.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72]
 gi|326576412|gb|EGE26321.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E]
          Length = 395

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/370 (44%), Positives = 225/370 (60%), Gaps = 27/370 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+GM ++EL    + +G        R +Q+ KWIY  G+ DF  M++IS++++H L
Sbjct: 18  KKVNLLGMSKDELSAFFVSLG----EKSFRATQVMKWIYQFGVTDFFEMTNISKKLQHKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVS 119
           ++   ++ P +  ++ S DGTRKW+       + G   +ETV IP        R TLC+S
Sbjct: 74  HEVACVVPPTVKYKEFSQDGTRKWVFE-----VAGGSLVETVLIPADDGKQFGRKTLCIS 128

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRK 178
           SQVGC+L CSFC TG Q   R+LT  EI+ Q+ +A +S + + P  E            +
Sbjct: 129 SQVGCALDCSFCSTGKQGFERDLTPSEIIGQLWVANQSYMENVPPTER---------ENR 179

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           ++N+VMMGMGEPL N+D V  S+S+  D      SKRR+TLSTSG VP +  + ++I V 
Sbjct: 180 VTNVVMMGMGEPLLNYDPVVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDIDVA 239

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGINDS 295
           LAISLHA +++LRN LVPIN+KYPL+ LI A + Y    N R    IT EYVML G+NDS
Sbjct: 240 LAISLHAPNDELRNELVPINKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDS 299

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
              A  L+ +LK +P+KINLIPFNP+P   Y  S    I  FS  + ++G+   IR  RG
Sbjct: 300 DEHAHQLVDLLKDLPSKINLIPFNPFPHAPYGRSSNNRIHAFSHILNQAGFVCTIRQTRG 359

Query: 356 LDILAACGQL 365
            DI AACGQL
Sbjct: 360 DDIDAACGQL 369


>gi|114046802|ref|YP_737352.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
           MR-7]
 gi|123326715|sp|Q0HX60|RLMN_SHESR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|113888244|gb|ABI42295.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-7]
          Length = 373

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/385 (42%), Positives = 224/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSYQKSTDGTIKFAIH-----VGEGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG              +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL+  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|71274608|ref|ZP_00650896.1| Conserved hypothetical protein 48 [Xylella fastidiosa Dixon]
 gi|170730870|ref|YP_001776303.1| hypothetical protein Xfasm12_1780 [Xylella fastidiosa M12]
 gi|205829927|sp|B0U494|RLMN_XYLFM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|71164340|gb|EAO14054.1| Conserved hypothetical protein 48 [Xylella fastidiosa Dixon]
 gi|167965663|gb|ACA12673.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 406

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 160/374 (42%), Positives = 224/374 (59%), Gaps = 26/374 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           +  +K++L+ + RE LE     +   +R+   R  Q+ KWI+ R + DF+ M+D+ + +R
Sbjct: 23  DVARKQNLLELDREGLERFFEDVLGEKRY---RAHQVMKWIHHRYVADFEQMTDVGKALR 79

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L     +  P +V +K S DGT KWLL   A        IETVYIP+K RGTLCVSSQ
Sbjct: 80  TRLQACAEVRVPRVVFDKHSADGTHKWLL---AMGTDRKNAIETVYIPDKGRGTLCVSSQ 136

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           +GC L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N
Sbjct: 137 IGCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQRRRLTN 185

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL NFDNV +++S+  D +G   S +R+TLSTSG VP I R+  E  V LA+
Sbjct: 186 VVMMGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAV 245

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDAL 300
           SLHA ++ LR  LVP+N+KYP+  L+ +C  Y  ++  R  +TFEY ++KG+ND    A 
Sbjct: 246 SLHAPNDKLREQLVPLNKKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAH 305

Query: 301 NLIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
            L K+++           AK+NLIPFNP+PG  Y  S + DI  F + +  +   + +R 
Sbjct: 306 ELAKLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRR 365

Query: 353 PRGLDILAACGQLK 366
            RG DI AACGQLK
Sbjct: 366 TRGDDIDAACGQLK 379


>gi|24374826|ref|NP_718869.1| hypothetical protein SO_3315 [Shewanella oneidensis MR-1]
 gi|81589118|sp|Q8EC29|RLMN_SHEON RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|24349512|gb|AAN56313.1|AE015769_9 conserved hypothetical protein TIGR00048 [Shewanella oneidensis
           MR-1]
          Length = 373

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/385 (42%), Positives = 224/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISGYQKSADGTIKFAIH-----VGEGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG              +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKETGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL+  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|169634407|ref|YP_001708143.1| hypothetical protein ABSDF3005 [Acinetobacter baumannii SDF]
 gi|169797246|ref|YP_001715039.1| hypothetical protein ABAYE3266 [Acinetobacter baumannii AYE]
 gi|184156828|ref|YP_001845167.1| Fe-S-cluster redox protein [Acinetobacter baumannii ACICU]
 gi|213155960|ref|YP_002318005.1| radical SAM enzyme, Cfr family [Acinetobacter baumannii AB0057]
 gi|215484687|ref|YP_002326922.1| UPF0063 protein yfgB [Acinetobacter baumannii AB307-0294]
 gi|239500768|ref|ZP_04660078.1| UPF0063 protein yfgB [Acinetobacter baumannii AB900]
 gi|260556128|ref|ZP_05828347.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           baumannii ATCC 19606]
 gi|301346479|ref|ZP_07227220.1| UPF0063 protein yfgB [Acinetobacter baumannii AB056]
 gi|301510159|ref|ZP_07235396.1| UPF0063 protein yfgB [Acinetobacter baumannii AB058]
 gi|301594216|ref|ZP_07239224.1| UPF0063 protein yfgB [Acinetobacter baumannii AB059]
 gi|332851249|ref|ZP_08433322.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332866104|ref|ZP_08436832.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
           6013113]
 gi|332873243|ref|ZP_08441200.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
           6014059]
 gi|205829659|sp|B2I3E2|RLMN_ACIBC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829701|sp|B0V4U0|RLMN_ACIBY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829716|sp|A3M208|RLMN_ACIBT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807143|sp|B7H072|RLMN_ACIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807144|sp|B7I5G4|RLMN_ACIB5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807145|sp|B0VKS2|RLMN_ACIBS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|169150173|emb|CAM88067.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|169153199|emb|CAP02291.1| conserved hypothetical protein [Acinetobacter baumannii]
 gi|183208422|gb|ACC55820.1| predicted Fe-S-cluster redox enzyme [Acinetobacter baumannii ACICU]
 gi|193076307|gb|ABO10952.2| putative Fe-S-cluster redox enzyme [Acinetobacter baumannii ATCC
           17978]
 gi|213055120|gb|ACJ40022.1| radical SAM enzyme, Cfr family [Acinetobacter baumannii AB0057]
 gi|213987723|gb|ACJ58022.1| UPF0063 protein yfgB [Acinetobacter baumannii AB307-0294]
 gi|260410183|gb|EEX03482.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           baumannii ATCC 19606]
 gi|332730129|gb|EGJ61456.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332734850|gb|EGJ65943.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
           6013113]
 gi|332738755|gb|EGJ69625.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
           6014059]
          Length = 410

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 172/370 (46%), Positives = 229/370 (61%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM R ELE+    IG      + R  Q+ KWI+   + DF  M++IS ++R  L
Sbjct: 28  EKVNLLGMSRAELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 83

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----SRGTLCVSS 120
            Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +    SR TLC+SS
Sbjct: 84  EQICEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISS 140

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKI 179
           QVGC+L CSFC TG Q   R+LT +EI+ Q+ +A  S + + P  E           R +
Sbjct: 141 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAER---------ERSV 191

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V L
Sbjct: 192 TNVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVAL 251

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGINDS 295
           AISLHA +++LRN LVPIN+KYPL  LI AC+ Y    G  +AR+ +T EYVML+G+ND 
Sbjct: 252 AISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQ 311

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           P  A  L+K+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  RG
Sbjct: 312 PEHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRG 371

Query: 356 LDILAACGQL 365
            DI AACGQL
Sbjct: 372 DDIDAACGQL 381


>gi|117919675|ref|YP_868867.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
           ANA-3]
 gi|205829885|sp|A0KUJ2|RLMN_SHESA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|117612007|gb|ABK47461.1| radical SAM enzyme, Cfr family [Shewanella sp. ANA-3]
          Length = 373

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/385 (42%), Positives = 224/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSYQKSTDGTIKFAIH-----VGEGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG              +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKETGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL+  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|121998570|ref|YP_001003357.1| radical SAM protein [Halorhodospira halophila SL1]
 gi|205829772|sp|A1WXZ3|RLMN_HALHL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|121589975|gb|ABM62555.1| 23S rRNA m(2)A-2503 methyltransferase [Halorhodospira halophila
           SL1]
          Length = 359

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/358 (44%), Positives = 212/358 (59%), Gaps = 27/358 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G+ R  L      +G      R R  QI +W++ R + DF  M+D+S+ +R  L +H 
Sbjct: 12  LLGLDRPRLAAFFDTLG----EKRFRARQIMQWLHQRHVYDFDEMTDLSKALRQRLREHA 67

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            +  PE+  ++ + DGTRKW++R     C+      E VYIPE  RGTLC+SSQ GC + 
Sbjct: 68  RVGLPEVAADQQASDGTRKWVVRLADGNCV------EAVYIPEPKRGTLCISSQAGCPMG 121

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC TG     RNLTA EI+ QV +AR  L         EG         I+NIV MGM
Sbjct: 122 CTFCATGEGGFSRNLTAAEIVGQVHVARQHLP--------EGA--------ITNIVFMGM 165

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NFD V  +  + +D  G   SKRR+T+STSG V  I R+     V LA+SLHA +
Sbjct: 166 GEPLLNFDPVISASRVFTDDYGFVLSKRRVTISTSGVVHAIERMQRVTDVSLAVSLHAPN 225

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           N+LRN LVP+NRK PLE L+ AC  Y      RRIT+EYVML G+ND    A  L++ L+
Sbjct: 226 NELRNQLVPLNRKNPLERLLPACHAYIAEKPHRRITWEYVMLDGVNDQDEHARELLQRLR 285

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           GIP+K+NLIPFNP+PG  Y  +  + +  F++ +   G ++ IR  RG DI  ACGQL
Sbjct: 286 GIPSKVNLIPFNPYPGARYGRTPDRQVRRFADRLLEHGLTATIRETRGDDIDGACGQL 343


>gi|322506720|gb|ADX02174.1| Fe-S-cluster redox protein [Acinetobacter baumannii 1656-2]
 gi|323516594|gb|ADX90975.1| Fe-S-cluster redox protein [Acinetobacter baumannii TCDC-AB0715]
          Length = 406

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 172/370 (46%), Positives = 229/370 (61%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM R ELE+    IG      + R  Q+ KWI+   + DF  M++IS ++R  L
Sbjct: 24  EKVNLLGMSRAELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 79

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----SRGTLCVSS 120
            Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +    SR TLC+SS
Sbjct: 80  EQICEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISS 136

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKI 179
           QVGC+L CSFC TG Q   R+LT +EI+ Q+ +A  S + + P  E           R +
Sbjct: 137 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAER---------ERSV 187

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V L
Sbjct: 188 TNVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVAL 247

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGINDS 295
           AISLHA +++LRN LVPIN+KYPL  LI AC+ Y    G  +AR+ +T EYVML+G+ND 
Sbjct: 248 AISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQ 307

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           P  A  L+K+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  RG
Sbjct: 308 PEHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRG 367

Query: 356 LDILAACGQL 365
            DI AACGQL
Sbjct: 368 DDIDAACGQL 377


>gi|261324195|ref|ZP_05963392.1| ribosomal RNA large subunit methyltransferase N [Brucella neotomae
           5K33]
 gi|261300175|gb|EEY03672.1| ribosomal RNA large subunit methyltransferase N [Brucella neotomae
           5K33]
          Length = 307

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 136/207 (65%), Positives = 168/207 (81%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  AL+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSF 212
           GMGEPL NF+ VKK+L IASD  GLSF
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSF 233


>gi|261820570|ref|YP_003258676.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
           wasabiae WPP163]
 gi|261604583|gb|ACX87069.1| radical SAM enzyme, Cfr family [Pectobacterium wasabiae WPP163]
          Length = 400

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 164/363 (45%), Positives = 217/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E  + +G        R  Q+ KWIY     DF  M+DI++  R  L
Sbjct: 32  EKINLLDLNRQQMRELFMSMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 87

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+VDE+ S DGT KW +      +GG   +ETVYIPE+ R TLCVSSQVGC
Sbjct: 88  QEIAEIRAPEVVDEQRSSDGTIKWAI-----LVGGQ-RVETVYIPEEDRATLCVSSQVGC 141

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G F     + G       R I+N+VM
Sbjct: 142 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFK----VTGQ------RPITNVVM 191

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 192 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 251

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+RN ++PIN+KY +EM + A R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 252 APTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 311

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 312 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 371

Query: 363 GQL 365
           GQL
Sbjct: 372 GQL 374


>gi|71898147|ref|ZP_00680333.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1]
 gi|71732121|gb|EAO34177.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1]
          Length = 401

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 160/374 (42%), Positives = 224/374 (59%), Gaps = 26/374 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           +  +K++L+ + RE LE     +   +R+   R  Q+ KWI+ R + DF+ M+D+ + +R
Sbjct: 18  DVARKQNLLELDREGLERFFEDVLGEKRY---RAHQVMKWIHHRYVADFEQMTDVGKALR 74

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L     +  P +V +K S DGT KWLL   A        IETVYIP+K RGTLCVSSQ
Sbjct: 75  TRLQACAEVRVPRVVFDKHSVDGTHKWLLAMGADRKNA---IETVYIPDKGRGTLCVSSQ 131

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           +GC L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N
Sbjct: 132 IGCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTN 180

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL NFDNV +++S+  D +G   S +R+TLSTSG VP I R+  E  V LA+
Sbjct: 181 VVMMGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDAL 300
           SLHA ++ LR  LVP+N+KYP+  L+ +C  Y  ++  R  +TFEY ++KG+ND    A 
Sbjct: 241 SLHAPNDKLREQLVPLNKKYPIVELMASCERYLSVNPKRDSVTFEYTLMKGVNDKQEHAH 300

Query: 301 NLIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
            L K+++           AK+NLIPFNP+PG  Y  S + DI  F + +  +   + +R 
Sbjct: 301 ELAKLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRR 360

Query: 353 PRGLDILAACGQLK 366
            RG DI AACGQLK
Sbjct: 361 TRGDDIDAACGQLK 374


>gi|226939612|ref|YP_002794685.1| hypothetical protein LHK_00683 [Laribacter hongkongensis HLHK9]
 gi|254807186|sp|C1DD41|RLMN_LARHH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|226714538|gb|ACO73676.1| Radical SAM domain containing protein [Laribacter hongkongensis
           HLHK9]
          Length = 366

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 148/333 (44%), Positives = 204/333 (61%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G  DF  M+D+++ +R  L+   ++  P ++ E+ S DGTRKWLL  
Sbjct: 25  FRAKQVMRWMHQMGQNDFDAMTDLAKSLRAKLHDTATVTVPSLMLEQASSDGTRKWLLD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLCVSSQVGC+L C+FC TG Q   RNL+  EI+ Q+ 
Sbjct: 84  ----VGTGNRVETVFIPEDDRGTLCVSSQVGCALECTFCSTGRQGFNRNLSTAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   +G           V P   R ISN+VMMGMGEPL N+DNV  ++ I  D  G   
Sbjct: 140 WANKSMG-----------VTPKNERVISNVVMMGMGEPLANYDNVVAAMRIMLDDHGYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+TLSTSG VP + R+ E+  V LA+SLHA ++ +R+ +VPIN+KYPL  L+ AC  
Sbjct: 189 SRRRVTLSTSGLVPAMDRLREDCPVALAVSLHAPNDRIRDEIVPINKKYPLRELLAACER 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    +TFEYVML  IND P  A  L+ +++ +P K NLIPFNP+P   Y  +   
Sbjct: 249 YLEKAPRDFVTFEYVMLDQINDRPEHARELVALVRDVPCKFNLIPFNPFPNSGYGRASNN 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +  F + +  +GY + +R  RG DI AACGQL
Sbjct: 309 AVRAFRDILAEAGYITTVRKTRGEDIDAACGQL 341


>gi|90417489|ref|ZP_01225412.1| hypothetical protein GB2207_07422 [marine gamma proteobacterium
           HTCC2207]
 gi|90330730|gb|EAS46009.1| hypothetical protein GB2207_07422 [marine gamma proteobacterium
           HTCC2207]
          Length = 392

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/362 (43%), Positives = 218/362 (60%), Gaps = 21/362 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+    + + L  +G      R R +QI KWI+  GI D   M++IS+ +R  L 
Sbjct: 19  KTNLLGLSASRIGDFLESLG----EKRFRGTQILKWIHQYGIDDLNEMTNISKSLRESLA 74

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               ++ PE+V  + S DGTRKWL++     + G   IE VYIPE+ RGTLCVSSQ+GC+
Sbjct: 75  DVAEVVMPEVVSCQDSVDGTRKWLIK-----VDGGSCIEMVYIPERDRGTLCVSSQIGCA 129

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   R+LT  EI+ Q+ +A      F               R+++N+VMM
Sbjct: 130 LDCSFCATGKQGFARDLTTAEIIGQLWIAAKSFDQFD----------TKNPRRVTNVVMM 179

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++S+  D      SKRR+TLST+G VP + ++G+   V LAISLHA
Sbjct: 180 GMGEPLMNFNNVVDAMSLMMDDNAYGLSKRRVTLSTAGVVPELDKLGDVSDVSLAISLHA 239

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRDALNLI 303
            +++LRN LVPINRKYPL   I + + Y      N R++T EY ++  +ND    A  L 
Sbjct: 240 PNDELRNQLVPINRKYPLVDFIGSAKRYLDKMPDNRRKVTVEYTLMDRVNDRDEHAKELS 299

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L+ +P KINLIPFNP+PG EY    +  +  F + ++  GY+  +RT RG DI AACG
Sbjct: 300 VLLRDLPCKINLIPFNPFPGSEYKKVTKVALNRFRDILQNDGYTVTVRTTRGDDIAAACG 359

Query: 364 QL 365
           QL
Sbjct: 360 QL 361


>gi|260549076|ref|ZP_05823297.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp.
           RUH2624]
 gi|260407804|gb|EEX01276.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp.
           RUH2624]
          Length = 410

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 171/370 (46%), Positives = 229/370 (61%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM R +LE+    IG      + R  Q+ KWI+   + DF  M++IS ++R  L
Sbjct: 28  EKVNLLGMSRAQLEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 83

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----SRGTLCVSS 120
            Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +    SR TLC+SS
Sbjct: 84  EQICEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISS 140

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKI 179
           QVGC+L CSFC TG Q   R+LT +EI+ Q+ +A  S + + P  E           R +
Sbjct: 141 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAER---------ERSV 191

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V L
Sbjct: 192 TNVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVAL 251

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGINDS 295
           AISLHA +++LRN LVPIN+KYPL  LI AC+ Y    G  +AR+ +T EYVML+G+ND 
Sbjct: 252 AISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQ 311

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           P  A  L+K+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  RG
Sbjct: 312 PEHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRG 371

Query: 356 LDILAACGQL 365
            DI AACGQL
Sbjct: 372 DDIDAACGQL 381


>gi|260913157|ref|ZP_05919639.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325]
 gi|260632744|gb|EEX50913.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325]
          Length = 391

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 160/363 (44%), Positives = 220/363 (60%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  DF  M++I++++R  L
Sbjct: 23  KKINLMNLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDDFDNMTNINKKLRDKL 78

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 79  KQVAEIKAPEVAVEQRSADGTIKWAMQV------GDQQVETVYIPEADRATLCVSSQVGC 132

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 133 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 182

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP + ++ E I V LAISLH
Sbjct: 183 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLH 242

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +NDS   A  L
Sbjct: 243 APNDELRDEIVPINKKYNIKALIDSVNRYLSVSNANHGKVTIEYVMLDHVNDSVEHAHQL 302

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P+KINLIP+NP+P   Y  S    I  F + +   G++  +R  RG DI AAC
Sbjct: 303 AQVLKNTPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIVRKTRGDDIDAAC 362

Query: 363 GQL 365
           GQL
Sbjct: 363 GQL 365


>gi|262371647|ref|ZP_06064926.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           junii SH205]
 gi|262311672|gb|EEY92757.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           junii SH205]
          Length = 411

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 171/370 (46%), Positives = 227/370 (61%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+GM R ELE    ++G      + R  Q+ KWI+   + DF  M++IS ++R  L
Sbjct: 29  KKVNLLGMSRTELEAFFEELG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLREKL 84

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----SRGTLCVSS 120
            +   I  PE+V    S DGTRKW+ R      G    +ETV IP +    +R TLC+SS
Sbjct: 85  EKICEIKAPEVVHRNYSKDGTRKWVFRVGD---GEGSLVETVLIPAEDKTGARKTLCISS 141

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKI 179
           QVGC+L CSFC TG Q   R+LT  EI+ Q+ +A  S + D P  E           R +
Sbjct: 142 QVGCALDCSFCSTGKQGFQRDLTPAEIIGQLWMANYSYMEDVPVAER---------ERTV 192

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+D V  S+ +  D      SKRR+TLSTSG VP I ++ ++I V L
Sbjct: 193 TNVVMMGMGEPLLNYDAVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVAL 252

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGINDS 295
           AISLHA +++LRN LVPIN+KYPL  LI AC+ Y    G  +ARR +T EYVML+G+ND 
Sbjct: 253 AISLHAPNDELRNELVPINKKYPLAQLIAACQRYLAKDGNESARRHVTIEYVMLEGVNDQ 312

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           P  A  L+K+LK +P+KINLIPFNP+P   Y  S +  I+ F + +  +G+   IR  RG
Sbjct: 313 PEHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRG 372

Query: 356 LDILAACGQL 365
            DI AACGQL
Sbjct: 373 DDIDAACGQL 382


>gi|183599740|ref|ZP_02961233.1| hypothetical protein PROSTU_03244 [Providencia stuartii ATCC 25827]
 gi|188022000|gb|EDU60040.1| hypothetical protein PROSTU_03244 [Providencia stuartii ATCC 25827]
          Length = 393

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 166/387 (42%), Positives = 226/387 (58%), Gaps = 33/387 (8%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N  +K +L+ + R+++ E   ++G        R  Q+ KWIY     DF  M+DI++ +R
Sbjct: 22  NNTQKINLLDLNRKQMREFFAQMG----EKPFRADQVMKWIYHYCYDDFDQMTDINKALR 77

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L +   I  PE+ +E+ S DGT KW +        G  ++ETVYIPE  R TLCVSSQ
Sbjct: 78  AKLKEVAEIRAPEVAEEQRSADGTIKWAITV------GDQQVETVYIPEDDRATLCVSSQ 131

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-IS 180
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G            + S GR+ I+
Sbjct: 132 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSSGRRPIT 180

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LA
Sbjct: 181 NVVMMGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 240

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298
           ISLHA ++D+R+ +VPIN+KY +E  + + R Y   SNA   R+T EYVML  INDS   
Sbjct: 241 ISLHAPTDDIRDDIVPINKKYNIETFLSSVRRYLSKSNANGGRVTVEYVMLDHINDSIEQ 300

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L + LK  P+KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI
Sbjct: 301 AHQLAECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDI 360

Query: 359 LAACGQL---------KSLSKRIPKVP 376
            AACGQL         ++L KR+   P
Sbjct: 361 DAACGQLAGEVIDRTKRTLKKRMAGEP 387


>gi|39996213|ref|NP_952164.1| ribosomal RNA large subunit methyltransferase N [Geobacter
           sulfurreducens PCA]
 gi|81702805|sp|Q74E53|RLMN_GEOSL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|39982978|gb|AAR34437.1| conserved hypothetical protein TIGR00048 [Geobacter sulfurreducens
           PCA]
 gi|307634805|gb|ADI83948.2| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter
           sulfurreducens KN400]
          Length = 360

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 162/358 (45%), Positives = 217/358 (60%), Gaps = 33/358 (9%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ--HF 68
           G+  +ELE  LL  G      R R  QI+KW+Y RG   F  M+D+++E+R  L +    
Sbjct: 9   GLSIDELERFLLGKG----KERYRARQIFKWLYQRGATSFAEMTDLAKELRRDLEETARI 64

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           S + PE ++  IS DGTRK+L R    C      +E+V IPE+ R TLC+SSQVGC++ C
Sbjct: 65  STLSPEALE--ISRDGTRKYLFRLDDGC-----SVESVLIPEEDRNTLCISSQVGCAMAC 117

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TGT +L RNLT  EI+ QV   +    D P                + NIV MGMG
Sbjct: 118 EFCLTGTFRLTRNLTTAEIVNQVCAVQR---DVP----------------VRNIVFMGMG 158

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EPL N DNV ++L I     GL FS RRIT+ST+G VP + R+G  + V LA+SL+A ++
Sbjct: 159 EPLANLDNVIRALQIMLHDDGLQFSTRRITVSTAGLVPEMERLGRSVTVNLAVSLNATTD 218

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           +LR+ ++PINRKYPL +L+DACR +P L   R+IT EYV+L G+ND+  DA  L+++L  
Sbjct: 219 ELRDRIMPINRKYPLAVLLDACRRFP-LPGRRKITIEYVLLGGVNDTLDDAKRLVRLLSD 277

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           IP+KINLIPFN   GC +    Q  I  F   +    ++   R+ RG DI AACGQLK
Sbjct: 278 IPSKINLIPFNEHEGCSFRSPSQDAIDRFHRYLLDKHFTVITRSSRGADISAACGQLK 335


>gi|146329686|ref|YP_001209425.1| hypothetical protein DNO_0514 [Dichelobacter nodosus VCS1703A]
 gi|205829748|sp|A5EVN1|RLMN_DICNV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146233156|gb|ABQ14134.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
          Length = 364

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 159/369 (43%), Positives = 226/369 (61%), Gaps = 23/369 (6%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78
           +AL    + Q     R  Q+ KW+Y   + DF+ M+D+S+++R +L++   +I P+++ +
Sbjct: 13  KALADWFVAQGEQPFRAKQVLKWLYHERVYDFERMTDLSKKLRAMLSEKACVILPQVIAD 72

Query: 79  KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138
           K + DGTRKW+ ++   C      IE V+IPE  RGTLC+SSQ GC+L C FC T     
Sbjct: 73  KTARDGTRKWVFQYA--CTNS---IEAVFIPEDDRGTLCISSQAGCALACPFCSTARAGF 127

Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198
            RNLT  EI++QV LA+ L+     CE           R I+N+V+MGMGEPL NF+ V 
Sbjct: 128 NRNLTTGEIVVQVWLAKELVH----CER------NGNSRLITNVVLMGMGEPLINFNQVL 177

Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPIN 258
            +  I     G   SKRR+TLSTSG VP I ++ E   + LA+SLHA +++LRN +VPIN
Sbjct: 178 PATEIFMSDWGFGLSKRRVTLSTSGVVPAIHKLREVTDLSLAVSLHAPNDELRNKIVPIN 237

Query: 259 RKYPLEMLIDACRHYPGLSNARR---ITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
           ++Y L+ LI+AC  Y    N ++   IT+EYVMLKG+ND+   A  L  +L+ +P KINL
Sbjct: 238 QRYGLKALIEACALYA--ENNKQHGGITWEYVMLKGVNDTLEHAQQLADLLRNVPGKINL 295

Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
           IPFN +P   + CS  +DIV F + ++++GY + IR  RG DI AACGQL     R+   
Sbjct: 296 IPFNEFPNSPFQCSSWEDIVRFQQFLQKAGYIATIRKTRGDDIDAACGQLVG---RVNDR 352

Query: 376 PRQEMQITG 384
            R+E Q  G
Sbjct: 353 IRRERQFQG 361


>gi|157374568|ref|YP_001473168.1| hypothetical protein Ssed_1429 [Shewanella sediminis HAW-EB3]
 gi|205829886|sp|A8FT67|RLMN_SHESH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157316942|gb|ABV36040.1| radical SAM enzyme, Cfr family [Shewanella sediminis HAW-EB3]
          Length = 373

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 167/385 (43%), Positives = 228/385 (59%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L     ++G        R  Q+ KWIY  G  DF  M++I++ +R  L
Sbjct: 4   KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWIYHFGETDFDAMNNINKVLRAKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +    ++ PEI   + S DGT K+ +      +G   E+ETVYIPE+ R TLCVSSQVGC
Sbjct: 60  SARCEVVAPEISSYQKSADGTIKFAIN-----VGQGQEVETVYIPEEDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV      + +F G +   G       R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIIGQVWR----VANFIGFQKETGE------RPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+T+STSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR++LVP+N+KYPLE  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   Q+ QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQDSQIS 369


>gi|253689386|ref|YP_003018576.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755964|gb|ACT14040.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 419

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 163/363 (44%), Positives = 217/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ +  + +G        R  Q+ KWIY     DF  M+DI++  R  L
Sbjct: 51  EKINLLDLNRQQMRDLFISMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 106

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+VDE+ S DGT KW +      +GG   +ETVYIPE+ R TLCVSSQVGC
Sbjct: 107 QEIAEIRAPEVVDEQRSSDGTIKWAI-----LVGGQ-RVETVYIPEEDRATLCVSSQVGC 160

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G F     + G       R I+N+VM
Sbjct: 161 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFK----VTGQ------RPITNVVM 210

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 211 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 270

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+RN ++PIN+KY +EM + A R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 271 APTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 330

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 331 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 390

Query: 363 GQL 365
           GQL
Sbjct: 391 GQL 393


>gi|293394872|ref|ZP_06639162.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
 gi|291422623|gb|EFE95862.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
          Length = 398

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 160/362 (44%), Positives = 218/362 (60%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R++L E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R+ L 
Sbjct: 31  KINLLDLNRQQLREFFAELG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRNKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  SIAEIRAPEVAEEQRSADGTIKWAIKV------GDQQVETVYIPEADRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G     + + G       R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AQKVTGQ------RPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++ +R+ +VPINRKY +E  + + R Y   SNA   R+T EYVML  INDS  DA  L 
Sbjct: 251 PNDTIRDEIVPINRKYNIETFLSSVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QL 365
           QL
Sbjct: 371 QL 372


>gi|157371847|ref|YP_001479836.1| ribosomal RNA large subunit methyltransferase N [Serratia
           proteamaculans 568]
 gi|205829876|sp|A8GHW8|RLMN_SERP5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157323611|gb|ABV42708.1| radical SAM enzyme, Cfr family [Serratia proteamaculans 568]
          Length = 398

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 160/364 (43%), Positives = 217/364 (59%), Gaps = 22/364 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+ + R++L E   K+G        R  Q+ KW+Y     DF+ M+DI++ +R+ 
Sbjct: 29  VAKINLLDLNRQQLREFFAKMG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRNK 84

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L     I  PE+ +E+ S DGT KW ++       G  ++ETVYIP+  R TLCVSSQVG
Sbjct: 85  LQSVAEIRAPEVAEEQRSADGTIKWAIKV------GDQQVETVYIPDGDRATLCVSSQVG 138

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C FC T  Q   RNL   EI+ QV  A  ++G      +          R I+N+V
Sbjct: 139 CALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGE----------RPITNVV 188

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISL
Sbjct: 189 MMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 248

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301
           HA ++ +R+ +VPINRKY +E  + A R Y   SNA   R+T EYVML  INDS  DA  
Sbjct: 249 HAPNDKIRDDIVPINRKYNIETFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSTDDAHQ 308

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AA
Sbjct: 309 LAEVLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAA 368

Query: 362 CGQL 365
           CGQL
Sbjct: 369 CGQL 372


>gi|288941010|ref|YP_003443250.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
 gi|288896382|gb|ADC62218.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
          Length = 365

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 155/348 (44%), Positives = 211/348 (60%), Gaps = 26/348 (7%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
           E  +  +G    H R     ++KW++  G+ DF  M+D+ + +R +L +   I  P I+ 
Sbjct: 19  ESLVTALGFKAFHGR----NLFKWMHKHGVVDFDAMTDLPKSLRTVLLETVEIRLPRILQ 74

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
              S DGT KW++      + G   +ETV+IPE  R T+CVSSQVGC+L C+FC T  Q 
Sbjct: 75  THPSADGTVKWVMEL----VDGQ-RVETVFIPEGKRSTICVSSQVGCALECAFCATARQG 129

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
             RNL+  EI+ QV  A   LG  P                 +N+VMMGMGEPL NF+  
Sbjct: 130 FNRNLSVAEIIGQVWHAARQLGAAP-----------------TNVVMMGMGEPLANFEAA 172

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257
            K++ +  D +    +K+R+TLSTSG VPNI R+ E   V LA+SLHA +++LR+ LVPI
Sbjct: 173 VKAMDVMQDDLAYMLAKQRVTLSTSGIVPNIYRLREVSDVSLAVSLHAPNDELRDELVPI 232

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
           NRKYPL  LI AC+HY      R+IT+EYVML GINDSP  A  LI++L+G+P+K+NLIP
Sbjct: 233 NRKYPLAELIPACKHYVAGDKRRKITWEYVMLDGINDSPAHAKQLIRLLEGVPSKVNLIP 292

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           FNP+ G ++  S    + TF E + RSG  +  R  RG +I AACGQL
Sbjct: 293 FNPFTGSDFGTSPPDRVETFRERLARSGIFAMTRKTRGDEIAAACGQL 340


>gi|332162639|ref|YP_004299216.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666869|gb|ADZ43513.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859271|emb|CBX69621.1| ribosomal RNA large subunit methyltransferase N [Yersinia
           enterocolitica W22703]
          Length = 397

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 161/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 30  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCFDDFEQMTDINKVLRAKLQ 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 86  RVAEIRAPEVAEEQRSTDGTIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 139

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + S G R I+N+VM
Sbjct: 140 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 188

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 189 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 248

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  + A R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 249 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 308

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 309 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 368

Query: 363 GQL 365
           GQL
Sbjct: 369 GQL 371


>gi|258545517|ref|ZP_05705751.1| Cfr family radical SAM enzyme [Cardiobacterium hominis ATCC 15826]
 gi|258519217|gb|EEV88076.1| Cfr family radical SAM enzyme [Cardiobacterium hominis ATCC 15826]
          Length = 367

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 155/348 (44%), Positives = 208/348 (59%), Gaps = 16/348 (4%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78
           EA+    I       R  Q+ KWIY   + DF  M+D+S+ +R  L     + +P I+ +
Sbjct: 13  EAMTAWFIDNGEKPFRAKQLLKWIYHERVTDFDAMTDLSKPLREKLKNIAELRFPTIIAD 72

Query: 79  KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138
           K + DGTRKW+ R+          IE V+IPE  RGTLC+SSQ GC+L C FC TG    
Sbjct: 73  KTASDGTRKWIFRYDC-----GNSIEAVFIPEDDRGTLCISSQAGCALACPFCSTGHAGF 127

Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198
            RNLT  EI++QV LA+ +L     C D  G       R ++N+V+MGMGEPL NF+NV 
Sbjct: 128 NRNLTTGEIIVQVWLAKDILN----C-DRHGN-----NRVVTNVVLMGMGEPLVNFNNVL 177

Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPIN 258
            +  +  D      SKRR+TLSTSG VP I  + E   + LA+SLHA +++LRN +VP+N
Sbjct: 178 PATRLMMDDHAFGLSKRRVTLSTSGIVPAIHALREVTDLSLAVSLHAPNDELRNQIVPVN 237

Query: 259 RKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
            +Y L  L+DAC  Y   +     +T+EYVML+ +NDS   A  L ++L+GIP KINLIP
Sbjct: 238 ARYGLAALLDACHQYVRHNGQHGGVTWEYVMLRDVNDSLEHARQLAELLRGIPGKINLIP 297

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           FN +PG  Y CS + DI+ F   +  +GY + IR  RG DI AACGQL
Sbjct: 298 FNAFPGSRYQCSRRSDILAFQRYLTENGYVATIRKTRGEDIDAACGQL 345


>gi|238763546|ref|ZP_04624507.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           kristensenii ATCC 33638]
 gi|238698178|gb|EEP90934.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           kristensenii ATCC 33638]
          Length = 398

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 160/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSTDGTIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + + G R I+N+VM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG-----------AVKATGIRPITNVVM 189

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  + A R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 309

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369

Query: 363 GQL 365
           GQL
Sbjct: 370 GQL 372


>gi|332970237|gb|EGK09230.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)]
          Length = 403

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 160/368 (43%), Positives = 222/368 (60%), Gaps = 25/368 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +++GM +E+L +   +IG        R +Q+ KWIY  G+ DF  M+++S+ +R  L+
Sbjct: 25  KTNILGMSQEQLGDYFKQIG----EKPFRATQVMKWIYQHGVTDFAQMTNLSKGLREKLS 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120
           +   +  PE+V ++ S DGTRKW+ +     + G   +ETV IP        R TLC+SS
Sbjct: 81  EKACVETPEVVHKEFSEDGTRKWVFK-----VAGGSLVETVLIPADDSKVNGRKTLCISS 135

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L CSFC TG Q   R+LTA EI+ Q+ +A +          +EG+        ++
Sbjct: 136 QVGCALDCSFCSTGKQGFERDLTAAEIIGQLWVANASY--------MEGVDSSEWQNNVT 187

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+  V  S+S+         SKRR+TLSTSG VP +  + ++I V LA
Sbjct: 188 NVVMMGMGEPLLNYKPVVSSMSLMLSDHAYGLSKRRVTLSTSGVVPKMYDLYKDIDVALA 247

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGINDSPR 297
           ISLHA +++LRN LVPIN+KYPL  LI A + Y   +N R    +T EYVML G+NDS  
Sbjct: 248 ISLHAPNDELRNELVPINKKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVNDSDE 307

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L+ +L+G+P+KINLIPFNP+P   Y  S    I  FS  +  +G+   IR  RG D
Sbjct: 308 HAHQLVALLEGLPSKINLIPFNPFPHAPYDRSSNNRIHAFSNILNNAGFVCTIRQTRGDD 367

Query: 358 ILAACGQL 365
           I AACGQL
Sbjct: 368 IDAACGQL 375


>gi|326559876|gb|EGE10276.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169]
 gi|326569638|gb|EGE19690.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1]
          Length = 395

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 162/370 (43%), Positives = 225/370 (60%), Gaps = 27/370 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+GM ++EL    + +G        R +Q+ KWIY  G+ DF  M++IS+++++ L
Sbjct: 18  KKVNLLGMSKDELSAFFVSLG----EKSFRATQVMKWIYQFGVTDFFEMTNISKKLQYKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVS 119
           ++   ++ P +  ++ S DGTRKW+       + G   +ETV IP        R TLC+S
Sbjct: 74  HEVACVVPPTVKYKEFSQDGTRKWVFE-----VAGGSLVETVLIPADDGKQFGRKTLCIS 128

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRK 178
           SQVGC+L CSFC TG Q   R+LT  EI+ Q+ +A +S + + P  E            +
Sbjct: 129 SQVGCALDCSFCSTGKQGFERDLTPSEIIGQLWVANQSYMENVPPTER---------ENR 179

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           ++N+VMMGMGEPL N+D V  S+S+  D      SKRR+TLSTSG VP +  + ++I V 
Sbjct: 180 VTNVVMMGMGEPLLNYDPVVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDIDVA 239

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGINDS 295
           LAISLHA +++LRN LVPIN+KYPL+ LI A + Y    N R    IT EYVML G+NDS
Sbjct: 240 LAISLHAPNDELRNELVPINKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDS 299

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
              A  L+ +LK +P+KINLIPFNP+P   Y  S    I  FS  + ++G+   IR  RG
Sbjct: 300 DEHAHQLVDLLKDLPSKINLIPFNPFPHAPYGRSSNNRIHAFSHILNQAGFVCTIRQTRG 359

Query: 356 LDILAACGQL 365
            DI AACGQL
Sbjct: 360 DDIDAACGQL 369


>gi|238753878|ref|ZP_04615238.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri
           ATCC 29473]
 gi|238707866|gb|EEQ00224.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri
           ATCC 29473]
          Length = 398

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 161/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSTDGTIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + S G R I+N+VM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 189

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  + A R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 309

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369

Query: 363 GQL 365
           GQL
Sbjct: 370 GQL 372


>gi|253988864|ref|YP_003040220.1| ribosomal RNA large subunit methyltransferase N [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780314|emb|CAQ83475.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 392

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 161/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ +  + +G        R  Q+ KWIY     DF+ M+DI++ +R  L 
Sbjct: 25  KINLLDLDRKQMRQFFVDMG----EKPFRADQVMKWIYHYCYDDFEQMTDINKTLRAKLQ 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q   I  PE+ +E+ S DGT KW +        G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 81  QVAEIRAPEVAEEQRSADGTIKWAISV------GDQQVETVYIPEDDRATLCVSSQVGCA 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + S GR+ I+N+VM
Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSSGRRPITNVVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 184 MGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 244 APTDDIRDDIVPINRKYNIEQFLAGVRRYLAKSNANQGRVTVEYVMLDHINDSVEQAHQL 303

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P+KINLIP+NP+PG  Y  S    I  F++ +   G+++ +R  RG DI AAC
Sbjct: 304 AECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFAKVLMGYGFTTIVRKTRGDDIDAAC 363

Query: 363 GQL 365
           GQL
Sbjct: 364 GQL 366


>gi|127512219|ref|YP_001093416.1| hypothetical protein Shew_1287 [Shewanella loihica PV-4]
 gi|205829882|sp|A3QCF9|RLMN_SHELP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|126637514|gb|ABO23157.1| radical SAM enzyme, Cfr family [Shewanella loihica PV-4]
          Length = 373

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 164/385 (42%), Positives = 226/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L     ++G        R  Q+ KW+Y  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWLYHFGVSDFEQMTNINKVLRAKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                ++ PEI   + S DGT K+ +      +G   E+ETVYIPE+ R TLCVSSQVGC
Sbjct: 60  AARCEVVAPEISSYQKSADGTIKFAIN-----VGNGQEVETVYIPEEDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG              +  R ISN+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FQKETGERPISNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+T+STSG VP +  +G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVMPAIDIMLDDFGFSLSKRRVTVSTSGVVPALDILGDNLDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR++LVP+N+KYPL+  + A R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDVLVPVNKKYPLQEFLAAIRRYLAKSNANRGRVTLEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AELMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   Q+ QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQDSQIS 369


>gi|186896255|ref|YP_001873367.1| ribosomal RNA large subunit methyltransferase N [Yersinia
           pseudotuberculosis PB1/+]
 gi|205829930|sp|B2K9Q3|RLMN_YERPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|186699281|gb|ACC89910.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis PB1/+]
          Length = 398

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 160/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSVDGTIKWAIKV------GDQQVETVYIPEADRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + S G R I+N+VM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 189

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +EM + A R Y     +N  R+T EYVML  INDS   A  L
Sbjct: 250 APTDDIRDEIVPINRKYNIEMFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQL 309

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369

Query: 363 GQL 365
           GQL
Sbjct: 370 GQL 372


>gi|119775502|ref|YP_928242.1| ribosomal RNA large subunit methyltransferase N [Shewanella
           amazonensis SB2B]
 gi|205829877|sp|A1S866|RLMN_SHEAM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|119768002|gb|ABM00573.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 373

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 162/357 (45%), Positives = 213/357 (59%), Gaps = 21/357 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI +WIY  G+ DF+ M++I++ +R  L     I+ PEI   + S DGT K+ +  
Sbjct: 28  FRAQQIMQWIYHFGVSDFEQMTNINKAMRAKLAARCEIVAPEITSYQKSSDGTIKFAIN- 86

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G   E+ETVYIPE  R TLCVSSQVGC+L C+FC T  Q   RNLT  EI+ Q+ 
Sbjct: 87  ----VGQGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQIW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                LG              +  R ISN+VMMGMGEPL N  NV  +++I  D  G   
Sbjct: 143 RVSHFLG----------FQKETGERPISNVVMMGMGEPLLNLANVVPAMNIMLDDYGFGL 192

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           SKRR+TLSTSG VP + ++G+ I V LA+S+HA +++LR++LVPIN+KYPL+  + A R 
Sbjct: 193 SKRRVTLSTSGVVPALDKLGDVIDVALAVSIHAPNDELRDVLVPINKKYPLQEFLAAIRR 252

Query: 273 YPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           Y   SNA   R+T EYVML  INDS   A  L K++K  P KINLIPFNP+PG  Y  S 
Sbjct: 253 YLEKSNANRGRVTLEYVMLDHINDSTDQAHELAKLMKDTPCKINLIPFNPYPGSPYGRSS 312

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQEMQIT 383
              I  F++ +     +  +R  RG DI AACGQL    +  +KR+ K   QE QI+
Sbjct: 313 NSRIDRFAKVLMEYDLTVIVRKTRGDDIDAACGQLAGDIRDRTKRLAKKRMQESQIS 369


>gi|308187773|ref|YP_003931904.1| UPF0063 protein yfgB [Pantoea vagans C9-1]
 gi|308058283|gb|ADO10455.1| UPF0063 protein yfgB [Pantoea vagans C9-1]
          Length = 389

 Score =  292 bits (747), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 166/379 (43%), Positives = 225/379 (59%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E  L +G        R  Q+ KWIY     DF+ M+DI++++R+ L
Sbjct: 21  QKINLLDLNRQQMREFFLSLG----EKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ +E  S DGT KW +R       G   +ETVYIPE  R TLCVSSQVGC
Sbjct: 77  MELTEIRAPEVAEEMRSTDGTIKWAIRV------GDQLVETVYIPEGDRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G       I G       R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKITGQ------RPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ LR+ +VPIN+KY +E  + A + Y G SNA   R+T EYV+L  +NDS  DA  L
Sbjct: 241 APNDKLRDDIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHEL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360

Query: 363 GQLK-SLSKRIPKVPRQEM 380
           GQL   +  R  +  R++M
Sbjct: 361 GQLAGEVIDRTKRTLRKKM 379


>gi|253999428|ref|YP_003051491.1| radical SAM enzyme, Cfr family [Methylovorus sp. SIP3-4]
 gi|253986107|gb|ACT50964.1| radical SAM enzyme, Cfr family [Methylovorus sp. SIP3-4]
          Length = 367

 Score =  292 bits (747), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 154/333 (46%), Positives = 205/333 (61%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G+ DF  M+DI++ +R  L     I  P I  E+IS DGTRKWL+  
Sbjct: 25  FRAKQLMRWMHHFGVHDFDQMTDIAKSLRDKLKDQAEITPPGIKLEQISEDGTRKWLID- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                G    +ETV+IPE  RGTLCVSSQVGC+L C+FC TG Q   RNLT  EI+ Q+ 
Sbjct: 84  ----AGTGNGVETVFIPEAERGTLCVSSQVGCALECTFCSTGRQGFNRNLTVSEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   LG  P  +           R ISN+VMMGMGEPL NFDNV  +L+I  D      
Sbjct: 140 VANKALGRDPKGD-----------RIISNVVMMGMGEPLANFDNVVTALNIMLDDSAYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ E   V LA+SLHA ++ LR+++VPIN+KYP++ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPAMDRLREACPVALAVSLHAPNDALRDVIVPINKKYPIKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    +TFEYVML G+NDS   A  L+ I++ +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLEKAPRDFVTFEYVMLDGVNDSVEHARQLLDIVRDVPCKFNLIPFNPFPNSGYDTSKPE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F + + ++ Y    R  RG DI AACGQL
Sbjct: 309 AIRRFRDVLMQADYVVTTRKTRGDDIDAACGQL 341


>gi|227112689|ref|ZP_03826345.1| hypothetical protein PcarbP_06994 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 418

 Score =  292 bits (747), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 162/363 (44%), Positives = 216/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ +  + +G        R  Q+ KWIY     DF  M+DI++  R  L
Sbjct: 50  EKINLLDLNRQQMRDLFMSMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 105

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+VDE+ S DGT KW +      +GG   +ETVYIPE+ R TLCVSSQVGC
Sbjct: 106 QEIAEIRAPEVVDEQRSSDGTIKWAI-----LVGGQ-RVETVYIPEEDRATLCVSSQVGC 159

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G F     + G       R I+N+VM
Sbjct: 160 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFK----VTGQ------RPITNVVM 209

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 210 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 269

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+RN ++PIN+KY +E  + A R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 270 APTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 329

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 330 AECLKNTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 389

Query: 363 GQL 365
           GQL
Sbjct: 390 GQL 392


>gi|123441415|ref|YP_001005402.1| ribosomal RNA large subunit methyltransferase N [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|205829928|sp|A1JKR9|RLMN_YERE8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|122088376|emb|CAL11167.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 398

 Score =  292 bits (747), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 160/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSTDGTIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + + G R I+N+VM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG-----------AVKATGIRPITNVVM 189

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  + A R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 309

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369

Query: 363 GQL 365
           GQL
Sbjct: 370 GQL 372


>gi|119897215|ref|YP_932428.1| hypothetical protein azo0924 [Azoarcus sp. BH72]
 gi|205829650|sp|A1K3Y6|RLMN_AZOSB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|119669628|emb|CAL93541.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 375

 Score =  292 bits (747), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 156/334 (46%), Positives = 208/334 (62%), Gaps = 7/334 (2%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G  DF  M+D+++ +R  L +   I  P  V + +S DGTRKWLL  
Sbjct: 27  FRARQVMRWMHREGCDDFDQMTDVAKSLRAKLKEIAVIRPPVPVRDSVSSDGTRKWLLD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE +RGTLCVSSQ GC+L C+FC TG Q   RNLTA EI+ Q+ 
Sbjct: 86  ----VGNANAVETVFIPETNRGTLCVSSQAGCALDCAFCSTGKQGFNRNLTAAEIIGQLW 141

Query: 153 LARSLLGDF-PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           LA  LLG       D+E     + GR ISN+VMMGMGEPL NFDNV  +L +  D     
Sbjct: 142 LANKLLGAARDAAADLEAGEKDN-GRIISNVVMMGMGEPLANFDNVVTALRLMLDDHAYG 200

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP I R+ +E  V LA+SLHA ++ LR+ LVPIN+KYPL  L+ AC+
Sbjct: 201 LSRRRVTVSTSGIVPAIDRLRDECPVALAVSLHASNDALRDRLVPINQKYPLRELMAACQ 260

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y   +    ITFEYVML G+ND    A  LI +++ +P K NLIPFNP+P   +  S+ 
Sbjct: 261 RYLERAPRDFITFEYVMLDGVNDQEAHARELIALVRDVPCKFNLIPFNPFPNSGFQRSNA 320

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           + I  F+  +  +G  +  R  RG D+ AACGQL
Sbjct: 321 ERIRRFAGILLDAGIVTTTRKTRGDDVDAACGQL 354


>gi|254786618|ref|YP_003074047.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
 gi|237685384|gb|ACR12648.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
          Length = 399

 Score =  292 bits (747), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 159/362 (43%), Positives = 226/362 (62%), Gaps = 18/362 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM +  LE     +G      + R +Q+ KW++  G+ DF  M++IS+ +R  L 
Sbjct: 19  KVNLLGMSQGRLEAFFESLG----EKKFRATQVLKWVHQLGVTDFAQMTNISKALRERLA 74

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE++++  S DGTRK+L+R     +GG   IETV+IP+  RGTLCVSSQVGCS
Sbjct: 75  DIAEVRIPEVIEQWDSTDGTRKFLIR-----VGGGNAIETVFIPDGERGTLCVSSQVGCS 129

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   R+LT++EI+ QV +A    G        EG       RK++N+V+M
Sbjct: 130 LDCSFCATGKQGFNRDLTSDEIIGQVWIAAKSFGQLQ-----EGGARGD--RKVTNVVLM 182

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV +++ +         SKRR+TLSTSG VP + R+G+     LAISLHA
Sbjct: 183 GMGEPLLNFENVVEAMHLMMHDNCYGISKRRVTLSTSGVVPQLDRLGKYTDACLAISLHA 242

Query: 246 VSNDLRNILVPINRKYPL-EMLIDACRHYPGLSNA-RRITFEYVMLKGINDSPRDALNLI 303
            +++LRN LVPIN+KYP+ ++L  A R+  GL +A R+IT EY ++  +ND    A  L+
Sbjct: 243 PNDELRNQLVPINKKYPIAQLLASAKRYIEGLPDAHRKITIEYTLIDQVNDRIEHAHELV 302

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK +P KINLIPFNP+    Y       +  F + +  +GY++ +RT RG DI AACG
Sbjct: 303 ELLKDVPVKINLIPFNPFGLSNYKKVSNNALRRFQQILIDAGYTATVRTTRGDDIDAACG 362

Query: 364 QL 365
           QL
Sbjct: 363 QL 364


>gi|227328680|ref|ZP_03832704.1| hypothetical protein PcarcW_15616 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 418

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 162/363 (44%), Positives = 216/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ +  + +G        R  Q+ KWIY     DF  M+DI++  R  L
Sbjct: 50  EKINLLDLNRQQMRDLFMSMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 105

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+VDE+ S DGT KW +      +GG   +ETVYIPE+ R TLCVSSQVGC
Sbjct: 106 QEIAEIRAPEVVDEQRSSDGTIKWAI-----LVGGQ-RVETVYIPEEDRATLCVSSQVGC 159

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G F     + G       R I+N+VM
Sbjct: 160 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFK----VTGQ------RPITNVVM 209

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 210 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 269

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+RN ++PIN+KY +E  + A R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 270 APTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 329

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 330 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 389

Query: 363 GQL 365
           GQL
Sbjct: 390 GQL 392


>gi|238752478|ref|ZP_04613954.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei
           ATCC 43380]
 gi|238709327|gb|EEQ01569.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei
           ATCC 43380]
          Length = 398

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 161/363 (44%), Positives = 216/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   K+G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAKMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSTDGTIKWAIKV------GDQQVETVYIPEGERATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + S G R I+N+VM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG-----------ALKSTGTRPITNVVM 189

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  + A R Y   S  N  R+T EYVML  INDS   A  L
Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDSTEQAHQL 309

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369

Query: 363 GQL 365
           GQL
Sbjct: 370 GQL 372


>gi|74316609|ref|YP_314349.1| hypothetical protein Tbd_0591 [Thiobacillus denitrificans ATCC
           25259]
 gi|123773051|sp|Q3SL73|RLMN_THIDA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|74056104|gb|AAZ96544.1| Conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 372

 Score =  291 bits (746), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 155/335 (46%), Positives = 202/335 (60%), Gaps = 9/335 (2%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q++ WI+  G+ DF  M+DI++ +R  L     +  P I    +S DGTRKWL   
Sbjct: 25  FRARQVFHWIHQAGVTDFAQMTDIAKSLREKLQNEAVVQAPAINFAHLSADGTRKWLFD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    IETV+IPE  RGTLCVSSQVGC+L C+FC TG Q   RNLT  EI+ Q+ 
Sbjct: 84  ----VGVGNGIETVFIPEDDRGTLCVSSQVGCALECTFCSTGRQGFNRNLTVAEIVGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A+  L   P     +        R ++N+VMMGMGEPL NF+NV  +L +  D      
Sbjct: 140 VAQHSLKREPNRTASDHGAGEIAERPVTNVVMMGMGEPLANFENVVTALGVMLDDHAYGL 199

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ E   V LA+SLHA ++ LR+ +VPINRKYPL  L+ ACR 
Sbjct: 200 SRRRVTVSTSGLVPAMDRLAERCPVALAVSLHAPNDALRDQIVPINRKYPLAELMAACRR 259

Query: 273 YPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           Y  L +A R  ITFEYVML G+ND P  A  LI + + +P K NLIPFNP+P   Y    
Sbjct: 260 Y--LVHAPRDFITFEYVMLAGVNDQPEHARQLIALTRDVPCKFNLIPFNPFPDSGYEKPR 317

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            + +  F E ++ +GY    R  RG DI AACGQL
Sbjct: 318 AEAMRVFREILQDAGYVVTTRKTRGDDIDAACGQL 352


>gi|238788173|ref|ZP_04631968.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           frederiksenii ATCC 33641]
 gi|238723760|gb|EEQ15405.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           frederiksenii ATCC 33641]
          Length = 398

 Score =  291 bits (746), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 161/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSIDGTIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + S G R I+N+VM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 189

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  + A R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 309

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369

Query: 363 GQL 365
           GQL
Sbjct: 370 GQL 372


>gi|88799903|ref|ZP_01115475.1| radical SAM enzyme, Cfr family protein [Reinekea sp. MED297]
 gi|88777334|gb|EAR08537.1| radical SAM enzyme, Cfr family protein [Reinekea sp. MED297]
          Length = 386

 Score =  291 bits (746), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 152/336 (45%), Positives = 208/336 (61%), Gaps = 18/336 (5%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+ KWI+ RG+ DF  M+D+S+ +R  L     I  PE+  +K S DGTRKW+++
Sbjct: 30  RFRATQVLKWIHQRGVDDFDDMTDVSKSLREKLKAVAVIDAPEVTFKKFSKDGTRKWVMK 89

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
            P     G   +ETVYIPE  RGTLCVSSQ+GC+L CSFC TG Q   R+L+A EI+ Q+
Sbjct: 90  MP-----GGSAVETVYIPEDDRGTLCVSSQIGCALDCSFCSTGKQGFNRDLSAAEIIGQL 144

Query: 152 -LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
            + ARS   D PG             R ++N+VMMGMGEPL N+DNV +++++  +    
Sbjct: 145 WVAARSW--DEPG---------KKRERHVTNVVMMGMGEPLLNYDNVVEAMNLMMEDNAY 193

Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
             SKRR+TLSTSG VP I  + EE  V +A+SLHA ++ LRN LVP+N++Y L+  +DA 
Sbjct: 194 GLSKRRVTLSTSGVVPRILDLAEETDVSMALSLHAPNDALRNELVPLNKRYGLKQTLDAV 253

Query: 271 RHY-PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
             Y   L + R  T EY ++  +ND P  A  L+ +L+  P KINLIPFNP+P   Y   
Sbjct: 254 NTYFARLPDKRVPTIEYTLINEVNDKPEHAHELVDLLRETPCKINLIPFNPFPNSGYERP 313

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + ++GY+  +R  RG DI AACGQL
Sbjct: 314 SNNRIHRFKDILHQAGYNVTVRKTRGDDIDAACGQL 349


>gi|317049139|ref|YP_004116787.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b]
 gi|316950756|gb|ADU70231.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b]
          Length = 389

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 163/379 (43%), Positives = 225/379 (59%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E  + +G        R  Q+ KW+Y     DF+ M+DI++ +R  L
Sbjct: 21  EKINLLDLNRQQMREFFVSLG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRGKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+ +EK S DGT KW +R       G   +ETVYIPE  R TLCVSSQVGC
Sbjct: 77  MQLTEIRAPEVAEEKRSSDGTIKWAIRV------GDQLVETVYIPEDDRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ LR+ +VPIN+KY +E  + A + Y   SNA   R+T EYV+L  +NDS  DA  L
Sbjct: 241 APNDKLRDDIVPINKKYNIETFLAAVKRYLAKSNANQGRVTIEYVLLDHVNDSTDDAHQL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P+KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 301 AELLKDTPSKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 360

Query: 363 GQLK-SLSKRIPKVPRQEM 380
           GQL   +  R  +  R++M
Sbjct: 361 GQLAGDVIDRTKRTMRKKM 379


>gi|50122145|ref|YP_051312.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
           atrosepticum SCRI1043]
 gi|81644326|sp|Q6D273|RLMN_ERWCT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|49612671|emb|CAG76121.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 398

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 162/362 (44%), Positives = 216/362 (59%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ +  + +G        R  Q+ KW+Y     DF  M+DI++  R  L 
Sbjct: 31  KINLLDLNRQQMRDLFMSMG----EKPFRADQVMKWMYHYCCDDFNQMTDINKVFRTKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+VDE+ S DGT KW +      +GG   +ETVYIPE+ R TLCVSSQVGC+
Sbjct: 87  EIAEIRAPEVVDEQRSSDGTIKWAI-----LVGGQ-RVETVYIPEEERATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G F     + G       R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFK----VTGQ------RPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++D+RN ++PIN+KY +EM + A R Y   SNA   R+T EYVML  IND    A  L 
Sbjct: 251 PTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QL 365
           QL
Sbjct: 371 QL 372


>gi|290476003|ref|YP_003468899.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
           bovienii SS-2004]
 gi|289175332|emb|CBJ82135.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
           bovienii SS-2004]
          Length = 392

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/385 (42%), Positives = 225/385 (58%), Gaps = 33/385 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ +  + +G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 25  KINLLDLNRKQMRQFFIDMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRMKLQ 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q   I  PE+ +E+ S DGT KW +        G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 81  QVAEIKAPEVAEEQRSADGTIKWAITV------GDQQVETVYIPEDERATLCVSSQVGCA 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + S GR+ I+N+VM
Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSSGRRPITNVVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ + V LAISLH
Sbjct: 184 MGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMVDVALAISLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  +   R Y   SNA   R+T EYVML  +NDS   A  L
Sbjct: 244 APTDDVRDEIVPINRKYNIEEFLAGVRRYLAKSNANQGRVTVEYVMLDHVNDSVEQAHQL 303

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P+KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 304 AECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 363

Query: 363 GQL---------KSLSKRIPKVPRQ 378
           GQL         ++L KR+   P Q
Sbjct: 364 GQLAGDVIDRTKRTLKKRLAGEPIQ 388


>gi|291613878|ref|YP_003524035.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1]
 gi|291583990|gb|ADE11648.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1]
          Length = 359

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/351 (43%), Positives = 216/351 (61%), Gaps = 16/351 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WIY  G  DF  MSD++  +R  L     I  P+++ E+ + DGTRKWLL  
Sbjct: 24  FRARQVLRWIYKGGESDFDAMSDLAISLREKLKLIACIQSPKVMREETASDGTRKWLLD- 82

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE+ RGTLCVS+Q GC+L C+FC TG Q   RNL+  EI+ QV 
Sbjct: 83  ----VGTGNAVETVFIPEEGRGTLCVSTQAGCALDCAFCSTGKQGFNRNLSTAEIIGQVW 138

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   LG     +D +G         ++N+V+MGMGEPL NFDN   +L +  D      
Sbjct: 139 WANRELG-----KDADG------NWPVTNVVLMGMGEPLLNFDNTVNALRLMLDDNAYGL 187

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ +E  V LAISLHA ++ LRN+LVPIN+KYPL+ L+ AC+ 
Sbjct: 188 SRRRVTVSTSGVVPAMDRLRDECPVALAISLHAPNDALRNVLVPINQKYPLQELMAACQR 247

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    +TFEYVML G+NDS + A  LI++++ +P K NLIPFNP+P   Y  SD  
Sbjct: 248 YLEKAPRDFVTFEYVMLAGVNDSVQHARELIELVRDVPCKFNLIPFNPFPQAPYQRSDMP 307

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
            ++ F + + ++G  + IR  RG DI AACGQL    +   K   + M+++
Sbjct: 308 TVLRFRDVLMQAGIVTTIRKVRGDDIAAACGQLAGQVQDKTKRTHRLMEVS 358


>gi|261345336|ref|ZP_05972980.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
 gi|282566377|gb|EFB71912.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
          Length = 393

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/386 (42%), Positives = 226/386 (58%), Gaps = 33/386 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E   ++G        R  Q+ KWIY     DF  M+DI++ +R  L
Sbjct: 25  QKINLLDLNRKQMREFFAELG----EKPFRADQVMKWIYHYCYDDFDQMTDINKVLRTKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ DE+ S DGT KW ++       G   +ETVYIPE  R TLCVSSQVGC
Sbjct: 81  KEVAEIRAPEVADEQRSSDGTIKWAIKV------GDQLVETVYIPEADRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIV 183
           +L C FC T  Q   RNL   EI+ QV  A  ++G            + S GR+ I+N+V
Sbjct: 135 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGRRPITNVV 183

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N +NV  ++ I  D  G   SKRR+T+STSG VP + ++G+ I V LAISL
Sbjct: 184 MMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISL 243

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301
           HA ++D+R+ +VPIN+KY +E  +++   Y   SNA   R+T EYVML  INDS   A  
Sbjct: 244 HAPTDDVRDEIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHINDSVEQAHQ 303

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L + LK  P+KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AA
Sbjct: 304 LAECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAA 363

Query: 362 CGQL---------KSLSKRIPKVPRQ 378
           CGQL         ++L KR+   P Q
Sbjct: 364 CGQLAGDVIDRTKRTLKKRLAGEPIQ 389


>gi|93005478|ref|YP_579915.1| hypothetical protein Pcryo_0648 [Psychrobacter cryohalolentis K5]
 gi|123264706|sp|Q1QD22|RLMN_PSYCK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|92393156|gb|ABE74431.1| conserved hypothetical protein [Psychrobacter cryohalolentis K5]
          Length = 413

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 160/370 (43%), Positives = 225/370 (60%), Gaps = 22/370 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM + +L +    IG        R++Q+ KWIY +G+ DF+ M+++S+ +R  L+
Sbjct: 32  KTNLLGMTQAQLADYFKSIG----EKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLS 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120
            +  +I P+++  + S DGTRKW+        GG + +ETV IP        R TLCVSS
Sbjct: 88  ANACVIPPKVIHRQYSDDGTRKWVFE----VTGGSL-VETVLIPADDSKLNGRKTLCVSS 142

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS--LLGDFPGCEDIEGMVIPSVGRK 178
           QVGC+L CSFC TG Q   R+LTA EIL Q+ +A +  +  +    E+++  +  +    
Sbjct: 143 QVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYMTDENDSLENVDHSLWEN---N 199

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           ++N+VMMGMGEPL N+  V  S+ +         SKRR+TLSTSG VP +  + +E+ V 
Sbjct: 200 VTNVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAQELDVA 259

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGINDS 295
           LAISLHA +++LRN LVPIN+KYPLE L+ A R+Y    N R    +T EYVML G+NDS
Sbjct: 260 LAISLHAPNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDS 319

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
              A  L+ +L  +P+KINLIPFNP+P   Y  S    I  FS  +  +G+   IR  RG
Sbjct: 320 NEHAEQLVALLGNLPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTIRQTRG 379

Query: 356 LDILAACGQL 365
            DI AACGQL
Sbjct: 380 DDIDAACGQL 389


>gi|257465082|ref|ZP_05629453.1| hypothetical protein AM202_01135 [Actinobacillus minor 202]
 gi|257450742|gb|EEV24785.1| hypothetical protein AM202_01135 [Actinobacillus minor 202]
          Length = 386

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 163/363 (44%), Positives = 217/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ M R ++ E L  +G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 18  EKVNLMNMTRPQMREFLASLG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++       G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 74  KQVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQIETVYIPEADRATLCVSSQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL   EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 128 ALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 177

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLSTSG VP +  + E+I V LAISLH
Sbjct: 178 MGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKIDVALAISLH 237

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++++R+ +VPIN+KY +EMLI++   Y  +SNA   ++T EYVML  IND    A  L
Sbjct: 238 APNDEIRDEIVPINKKYNIEMLINSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAHQL 297

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+LK  P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 298 AKVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKALMEYGFTVTIRKTRGDDIDAAC 357

Query: 363 GQL 365
           GQL
Sbjct: 358 GQL 360


>gi|152995382|ref|YP_001340217.1| radical SAM protein [Marinomonas sp. MWYL1]
 gi|205829788|sp|A6VV03|RLMN_MARMS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|150836306|gb|ABR70282.1| radical SAM enzyme, Cfr family [Marinomonas sp. MWYL1]
          Length = 371

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 163/367 (44%), Positives = 220/367 (59%), Gaps = 20/367 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  +KK +L+G+  E+L E    IG      + R +Q+ KWI+ +G   F+ M+D+S+ +
Sbjct: 1   MTDIKKVNLLGLSPEKLIEFFESIG----EKKFRATQVIKWIHQKGAESFEEMTDVSKAL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVS 119
           R  L Q   I  PE+V + IS DGTRKW++R      GG  + +ETV IP+  R TLCVS
Sbjct: 57  RAKLEQICEIRGPEVVSQNISTDGTRKWIIRTE----GGKNDCVETVLIPDGDRATLCVS 112

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGCSL CSFC TG Q   RNLT  EI+ QV +A    G             P+  R++
Sbjct: 113 SQVGCSLDCSFCSTGKQGFNRNLTPAEIIGQVWIAIKSFGPMD----------PNGPRRV 162

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL NF+ V  ++ +         SKRR+TLSTSG VP I  + +   V L
Sbjct: 163 TNVVMMGMGEPLMNFEPVVDAMILMMHDHAYGLSKRRVTLSTSGVVPKIYELVKRTDVSL 222

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRD 298
           AISLHA ++ LRN LVPIN+KYP+  L++AC+ Y   L + R IT EY ++ G+ND+   
Sbjct: 223 AISLHAPNDALRNELVPINKKYPIAELLEACQFYLENLPDKRHITIEYTLMSGVNDNEEQ 282

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L ++LK +  KINLIPFNP+P   Y          F + +  +GY+  +RT RG DI
Sbjct: 283 AHELAELLKVLECKINLIPFNPFPHSGYEKPSNNRTRRFQKILADAGYTVTVRTTRGDDI 342

Query: 359 LAACGQL 365
            AACGQL
Sbjct: 343 DAACGQL 349


>gi|77362060|ref|YP_341634.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123757670|sp|Q3ID16|RLMN_PSEHT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|76876971|emb|CAI89188.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster
           domain [Pseudoalteromonas haloplanktis TAC125]
          Length = 376

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 167/383 (43%), Positives = 229/383 (59%), Gaps = 21/383 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   KK +L+ + RE + E     G        R+ Q+ KWIY  G+ +F  MS++++++
Sbjct: 1   MTEQKKINLLDLNREGMRELFASFG----EKPFRSDQVMKWIYHFGVDNFDDMSNVNKKL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           +  L     I+ PEI   + + DGT K+ L      + G  E+E V+IPEK R TLCVSS
Sbjct: 57  KEKLKAECEIVAPEISVRQQAKDGTIKYAL-----VLEGGQEVEAVWIPEKERATLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C+FC T  Q   RNL   EI+ QV      +G       ++G    S  R ++
Sbjct: 112 QVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG-------LDGH---SEKRPVT 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  NV  ++ +  D  G   SKRR+TLSTSG VP +  + E+I V LA
Sbjct: 162 NVVMMGMGEPLLNVKNVVPAMELMLDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299
           ISLHA  N LR+ILVP+N+KYP+E  + ACR Y   S A + +T EYVML GINDS   A
Sbjct: 222 ISLHAPDNALRDILVPVNKKYPIEEFLAACRRYIDGSKANKDVTVEYVMLNGINDSTDQA 281

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L++ LKG P K+NLIPFNP+PG EY  S    I  FS+ ++ +G +  +R PRG DI 
Sbjct: 282 HALVQTLKGTPCKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRPRGDDID 341

Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381
           AACGQL   +  R  ++ +++M+
Sbjct: 342 AACGQLAGDVVDRTKRLAKKKMR 364


>gi|304398588|ref|ZP_07380460.1| radical SAM enzyme, Cfr family [Pantoea sp. aB]
 gi|304353799|gb|EFM18174.1| radical SAM enzyme, Cfr family [Pantoea sp. aB]
          Length = 389

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 162/363 (44%), Positives = 217/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E  L +G        R  Q+ KWIY     DF+ M+DI++++R+ L
Sbjct: 21  QKINLLDLNRQQMREFFLSLG----EKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ +E  S DGT KW +R       G   +ETVYIPE  R TLCVSSQVGC
Sbjct: 77  MELTEIRAPEVAEEMRSTDGTIKWAIRV------GDQLVETVYIPEGDRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G       I G       R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKITGQ------RPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ LR+ +VPIN+KY +E  + A + Y   SNA   R+T EYV+L  +NDS  DA  L
Sbjct: 241 AANDKLRDDIVPINKKYNIETFLAAVKRYIAKSNANQGRVTIEYVLLDHVNDSTDDAHEL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360

Query: 363 GQL 365
           GQL
Sbjct: 361 GQL 363


>gi|78223881|ref|YP_385628.1| ribosomal RNA large subunit methyltransferase N [Geobacter
           metallireducens GS-15]
 gi|123742801|sp|Q39S71|RLMN_GEOMG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78195136|gb|ABB32903.1| 23S rRNA m(2)A-2503 methyltransferase [Geobacter metallireducens
           GS-15]
          Length = 346

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/337 (46%), Positives = 211/337 (62%), Gaps = 29/337 (8%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH--FSIIYPEIVDEKISCDGTRKWL 89
           R R  QI+KW+Y +  R F  M+D+++++R  L +    S + PE ++  +S DGTRK+L
Sbjct: 27  RYRARQIFKWLYQKDARSFAEMTDLAKDLRRDLEETAVISDLEPEAME--VSRDGTRKYL 84

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
            R      G  VE  +V IPE+ R TLC+SSQVGC++ C FC TGT +L RNLTA EI+ 
Sbjct: 85  FRLED---GNTVE--SVLIPEEDRTTLCISSQVGCAMACEFCLTGTFRLTRNLTAGEIVN 139

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q+   R    D P                + NIV MGMGEPL N DNV K+L I     G
Sbjct: 140 QICAVRR---DVP----------------VRNIVFMGMGEPLANLDNVVKALKIILHDDG 180

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           L FS RR+T+STSG VP + R+G E+ V LA+SL+A ++++R+ ++P+NR+YPL +L+DA
Sbjct: 181 LQFSTRRVTVSTSGLVPEMERLGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLRLLLDA 240

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           CR YP L   R+IT EYVM+KG+NDS  DA  L+K+L  I +KINLIPFN   GC +   
Sbjct: 241 CRSYP-LPGRRKITIEYVMIKGLNDSLEDAKRLVKLLSDISSKINLIPFNEHDGCSFKSP 299

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           DQ  I  F   +    ++   R+ RG DI AACGQLK
Sbjct: 300 DQGAIDVFHSYLLSKHFTVITRSSRGSDISAACGQLK 336


>gi|37525329|ref|NP_928673.1| hypothetical protein plu1373 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81419944|sp|Q7N709|RLMN_PHOLL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|36784756|emb|CAE13666.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 392

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 161/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ +  + +G        R  Q+ KWIY     DF+ M+DI++ +R  L 
Sbjct: 25  KINLLDLNRKQMRQFFIDMG----EKPFRADQVMKWIYHYCYDDFEQMTDINKILRAKLQ 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q   I  PE+ +E+ S DGT KW +        G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 81  QVAEIRAPEVAEEQRSADGTIKWAITV------GDQQVETVYIPEDDRATLCVSSQVGCA 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + S GR+ I+N+VM
Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSSGRRPITNVVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 184 MGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  +   R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 244 APTDDVRDDIVPINRKYNIEQFLAGVRRYLTKSNANQGRVTVEYVMLDHINDSVEQAHQL 303

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P+KINLIP+NP+PG  Y  S    I  F++ +   G+++ +R  RG DI AAC
Sbjct: 304 AECLKETPSKINLIPWNPFPGAPYGRSSNSRIDRFAKVLMEYGFTTIVRKTRGDDIDAAC 363

Query: 363 GQL 365
           GQL
Sbjct: 364 GQL 366


>gi|284006771|emb|CBA72033.1| radical SAM superfamily protein [Arsenophonus nasoniae]
          Length = 389

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 161/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ M R+++ +     G        R  Q+ KWIY     DF  M+DI++ +R+ L 
Sbjct: 22  KVNLLDMDRKQMRQFFSDTG----EKPFRADQVMKWIYHHCYDDFDLMTDINKVLRNKLK 77

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q   I  PEI  E+ S DGT KW +        G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 78  QAAEIRAPEIAQEQRSTDGTIKWAITV------GEQQVETVYIPEDDRATLCVSSQVGCA 131

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + S GR+ I+N+VM
Sbjct: 132 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKVIGS-----------LKSSGRRPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVIPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++++R+ +VPIN+KY +E  + + R Y   SNA   R+T EYVML G+NDS   A  L
Sbjct: 241 APTDEIRDEIVPINKKYNIETFLASVRRYLTKSNANQGRVTVEYVMLNGVNDSIEHAHQL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P+KINLIP+NP+PG  Y  S    I  F++ + + G+++ +R  RG DI AAC
Sbjct: 301 AECLKHTPSKINLIPWNPFPGAPYSRSSNSRIDRFAKVLMKYGFTTIVRKTRGDDIDAAC 360

Query: 363 GQL 365
           GQL
Sbjct: 361 GQL 363


>gi|238797961|ref|ZP_04641451.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           mollaretii ATCC 43969]
 gi|238718166|gb|EEQ09992.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           mollaretii ATCC 43969]
          Length = 398

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 160/363 (44%), Positives = 216/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   K+G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAKMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSTDGTIKWAIKV------GDQQVETVYIPEADRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + S G R I+N+VM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 189

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  + A R Y     +N  R+T EYVML  INDS   A  L
Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQL 309

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMDYGFTTIVRKTRGDDIDAAC 369

Query: 363 GQL 365
           GQL
Sbjct: 370 GQL 372


>gi|240950291|ref|ZP_04754566.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305]
 gi|240295193|gb|EER46001.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305]
          Length = 386

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 163/363 (44%), Positives = 217/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ M R ++ E L  +G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 18  EKVNLMNMTRPQMREFLASLG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++       G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 74  KQVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQIETVYIPEADRATLCVSSQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL   EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 128 ALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 177

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLSTSG VP +  + E+I V LAISLH
Sbjct: 178 MGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKIDVALAISLH 237

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++++R+ +VPIN+KY ++MLID+   Y  +SNA   ++T EYVML  IND    A  L
Sbjct: 238 APNDEIRDEIVPINKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAHQL 297

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+LK  P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 298 AKVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKALMEYGFTVTIRKTRGDDIDAAC 357

Query: 363 GQL 365
           GQL
Sbjct: 358 GQL 360


>gi|313201450|ref|YP_004040108.1| radical sam enzyme, cfr family [Methylovorus sp. MP688]
 gi|312440766|gb|ADQ84872.1| radical SAM enzyme, Cfr family [Methylovorus sp. MP688]
          Length = 367

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 205/333 (61%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G+ DF  M+DI++ +R  L     I  P I  E+IS DGTRKWL+  
Sbjct: 25  FRAKQLMRWMHHFGVHDFDQMTDIAKSLRDKLKDQAEITPPGIKLEQISEDGTRKWLID- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                G    +ETV+IPE  RGTLCVSSQVGC+L C+FC TG Q   RNL+  EI+ Q+ 
Sbjct: 84  ----AGTGNGVETVFIPEAERGTLCVSSQVGCALECTFCSTGRQGFNRNLSVSEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   LG  P  +           R ISN+VMMGMGEPL NFDNV  +L+I  D      
Sbjct: 140 VANKALGRDPKGD-----------RIISNVVMMGMGEPLANFDNVVTALNIMLDDSAYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ E   V LA+SLHA ++ LR+++VPIN+KYP++ L+ AC+ 
Sbjct: 189 SRRRVTVSTSGMVPAMDRLREACPVALAVSLHAPNDALRDVIVPINKKYPIKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    +TFEYVML G+NDS   A  L+ I++ +P K NLIPFNP+P   Y  S  +
Sbjct: 249 YLEKAPRDFVTFEYVMLDGVNDSVEHARQLLDIVRDVPCKFNLIPFNPFPNSGYDTSKPE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F + + ++ Y    R  RG DI AACGQL
Sbjct: 309 AIRRFRDVLMQADYVVTTRKTRGDDIDAACGQL 341


>gi|318606744|emb|CBY28242.1| ribosomal RNA large subunit methyltransferase N [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 397

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/363 (44%), Positives = 216/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 30  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCFDDFEQMTDINKVLRAKLQ 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DG  KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 86  RVAEIRAPEVAEEQRSTDGAIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 139

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + S G R I+N+VM
Sbjct: 140 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 188

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 189 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 248

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  + A R Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 249 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 308

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 309 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 368

Query: 363 GQL 365
           GQL
Sbjct: 369 GQL 371


>gi|291618414|ref|YP_003521156.1| YfgB [Pantoea ananatis LMG 20103]
 gi|291153444|gb|ADD78028.1| YfgB [Pantoea ananatis LMG 20103]
 gi|327394806|dbj|BAK12228.1| radical SAM Cfr family YfgB [Pantoea ananatis AJ13355]
          Length = 389

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/379 (43%), Positives = 225/379 (59%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E  + +G        R  Q+ KWIY     DF+ M+DI++++R+ L
Sbjct: 21  QKINLLDLNRQQMREFFVSLG----EKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ +E  S DGT KW +R       G   +ETVYIPE  R TLCVSSQVGC
Sbjct: 77  MELTEIRAPEVAEEMRSTDGTIKWAIRV------GDQLVETVYIPEGDRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ LR+ +VPIN+KY +E  + A + Y G SNA   R+T EYV+L  +NDS  DA  L
Sbjct: 241 APNDKLRDDIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHEL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360

Query: 363 GQLK-SLSKRIPKVPRQEM 380
           GQL   +  R  +  R++M
Sbjct: 361 GQLAGEVIDRTKRTLRKKM 379


>gi|119471078|ref|ZP_01613637.1| predicted enzyme [Alteromonadales bacterium TW-7]
 gi|119445918|gb|EAW27199.1| predicted enzyme [Alteromonadales bacterium TW-7]
          Length = 377

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 165/379 (43%), Positives = 228/379 (60%), Gaps = 21/379 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ + E  +  G        R  Q+ KWIY  G+ +F  MS+++++++  L
Sbjct: 6   KKINLLDLNRDAMRELFVSFG----EKPFRGDQVMKWIYHFGVDNFDEMSNVNKKLKEKL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + + DGT K+ L      + G  E+E V+IPEK R TLCVSSQVGC
Sbjct: 62  KAECEIVAPEISVRQQASDGTIKYAL-----VLEGGQEVEAVWIPEKERATLCVSSQVGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL   EI+ QV      +G       ++G    S  R ++N+VM
Sbjct: 117 ALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG-------LDG---NSEKRPVTNVVM 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ +  D  G   SKRR+TLSTSG VP +  + E+I V LAISLH
Sbjct: 167 MGMGEPLLNVKNVVPAMELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALAISLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303
           A  N LR+ILVPIN+KYP+E  + ACR Y   S A + +T EYVML G+NDS   A  L+
Sbjct: 227 APDNALRDILVPINKKYPIEEFLAACRRYIDGSKANKDVTIEYVMLNGVNDSTDQAHELV 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K LKG P+K+NLIPFNP+PG EY  S    I  FS+ ++ +G +  +R  RG DI AACG
Sbjct: 287 KTLKGTPSKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRTRGDDIDAACG 346

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  ++ +++M+
Sbjct: 347 QLAGDVVDRTKRMAKKKMR 365


>gi|325981894|ref|YP_004294296.1| ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp.
           AL212]
 gi|325531413|gb|ADZ26134.1| Ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp.
           AL212]
          Length = 366

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 157/353 (44%), Positives = 215/353 (60%), Gaps = 15/353 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  GI DF  MSD+++ +R  L     I  P I+ + ++ DGTRKWLL  
Sbjct: 25  FRARQLLRWIHQFGIADFDLMSDLAKGLREKLATQAVIELPTIMSDYVAADGTRKWLLS- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    IETV+IPE SRGTLC+SSQVGC+L C+FC TG Q   RNLT  EI+ Q+ 
Sbjct: 84  ----VGAGNGIETVFIPEISRGTLCISSQVGCALACTFCSTGKQGFNRNLTVAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A  +L     C D   +      R ++N+VMMGMGEPL NF+NV  +L +  D      
Sbjct: 140 IANKML---ETCGDDTKL---QTKRAVTNVVMMGMGEPLANFENVVTALDLMLDDHAYGL 193

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP I R+ E   V LA+SLHA ++ LR+ LVPIN+KYP++ L+ AC+ 
Sbjct: 194 SRRRVTVSTSGLVPAIDRLRERCPVALAVSLHAPNDTLRDQLVPINKKYPIKELLAACQR 253

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML GINDS   A  L+K+++ IP K NLIPFN +    Y  S  +
Sbjct: 254 YLSAAPRDFITFEYVMLDGINDSVAHACELVKLVQDIPCKFNLIPFNSFSDSGYKRSSTE 313

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQEMQ 381
            I  F + +  +G  + +R  RG DI AACGQL    K  + R+ ++  + +Q
Sbjct: 314 AIRVFRDVLVHAGLITTVRKTRGDDIAAACGQLAGQVKDKTHRLTRLKIETIQ 366


>gi|15603872|ref|NP_246946.1| hypothetical protein PM2007 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|81636369|sp|Q9CJJ8|RLMN_PASMU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|12722449|gb|AAK04091.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 394

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 158/363 (43%), Positives = 219/363 (60%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 26  KKINLMNLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLRDKL 81

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 82  KQVAEIKAPEVAVEQRSADGTIKWAMQV------GDQQVETVYIPEADRATLCVSSQVGC 135

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 136 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 185

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP + ++ E I V LAISLH
Sbjct: 186 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLH 245

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ML+D+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 246 APNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQL 305

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G++  +R  RG DI AAC
Sbjct: 306 AQVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDIDAAC 365

Query: 363 GQL 365
           GQL
Sbjct: 366 GQL 368


>gi|226954474|ref|ZP_03824938.1| radical SAM protein [Acinetobacter sp. ATCC 27244]
 gi|294651490|ref|ZP_06728803.1| Fe-S-cluster oxidoreductase [Acinetobacter haemolyticus ATCC 19194]
 gi|226834823|gb|EEH67206.1| radical SAM protein [Acinetobacter sp. ATCC 27244]
 gi|292822640|gb|EFF81530.1| Fe-S-cluster oxidoreductase [Acinetobacter haemolyticus ATCC 19194]
          Length = 413

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 169/369 (45%), Positives = 226/369 (61%), Gaps = 25/369 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM R ELE+    +G      + R  Q+ KWI+   + DF  M++IS ++R  L 
Sbjct: 32  KVNLLGMSRAELEKFFEDLG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLREKLE 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----SRGTLCVSSQ 121
           +   I  PE+V    S DGTRKW+ R      G    +ETV IP +    +R TLC+SSQ
Sbjct: 88  KICEIKAPEVVHRNYSKDGTRKWVFRVGD---GEGSLVETVLIPAEDKTGARKTLCISSQ 144

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKIS 180
           VGC+L CSFC TG Q   R+LT  EI+ Q+ +A  S + + P  E           R ++
Sbjct: 145 VGCALDCSFCSTGKQGFQRDLTPAEIIGQLWMANYSYMEEVPVAER---------ERTVT 195

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  S+ +  D      SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 196 NVVMMGMGEPLLNYDAVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALA 255

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGINDSP 296
           ISLHA +++LRN LVPIN+KYPL+ LI AC+ Y    G  +ARR +T EYVML G+ND P
Sbjct: 256 ISLHAPNDELRNELVPINKKYPLQQLIAACQRYLAKDGNESARRHVTIEYVMLDGVNDQP 315

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L+K+LK +P+KINLIPFNP+P   Y  S +  I+ F + +  +G+   IR  RG 
Sbjct: 316 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGD 375

Query: 357 DILAACGQL 365
           DI AACGQL
Sbjct: 376 DIDAACGQL 384


>gi|259907715|ref|YP_002648071.1| ribosomal RNA large subunit methyltransferase N [Erwinia pyrifoliae
           Ep1/96]
 gi|224963337|emb|CAX54822.1| conserved uncharacterized protein YfgB [Erwinia pyrifoliae Ep1/96]
 gi|283477569|emb|CAY73485.1| UPF0063 protein yfgB [Erwinia pyrifoliae DSM 12163]
 gi|310764777|gb|ADP09727.1| ribosomal RNA large subunit methyltransferase N [Erwinia sp.
           Ejp617]
          Length = 389

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 162/363 (44%), Positives = 217/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E    +G        R  Q+ KWIY     DF  M+DI++  R+ L
Sbjct: 21  EKINLLDLNRQQMREFFASLG----EKPFRADQVMKWIYHYCCDDFDEMTDINKVFRNRL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ +E+ S DGT KW ++     +GG  ++ETVYIPEK R TLCVSSQVGC
Sbjct: 77  KELAEIRAPEVAEEQRSADGTIKWAIQ-----VGGQ-QVETVYIPEKDRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +RN +VPIN+KY +E  + +   Y G SNA   R+T EYVML  INDS  +A  L
Sbjct: 241 APNDSIRNEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHEL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 301 AALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 360

Query: 363 GQL 365
           GQL
Sbjct: 361 GQL 363


>gi|238758832|ref|ZP_04620005.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae
           ATCC 35236]
 gi|238702940|gb|EEP95484.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae
           ATCC 35236]
          Length = 398

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/363 (43%), Positives = 215/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCFDDFEQMTDINKGLRTKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSTDGTIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + + G R I+N+VM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG-----------AVKATGIRPITNVVM 189

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  + A R Y   S  N  R+T EYVML  INDS   A  L
Sbjct: 250 APTDDIRDDIVPINRKYNIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDSTEQAHQL 309

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
              LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 310 AACLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369

Query: 363 GQL 365
           GQL
Sbjct: 370 GQL 372


>gi|82703494|ref|YP_413060.1| hypothetical protein Nmul_A2379 [Nitrosospira multiformis ATCC
           25196]
 gi|123768149|sp|Q2Y6F3|RLMN_NITMU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|82411559|gb|ABB75668.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosospira multiformis
           ATCC 25196]
          Length = 365

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/355 (44%), Positives = 213/355 (60%), Gaps = 17/355 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G  DF  MSD+++ +R  L     I  P+++ +  + DGTRKWLL  
Sbjct: 25  FRARQLLRWIHRTGEADFDAMSDLAKGLREKLAAAAVIEPPKVISDHTASDGTRKWLL-- 82

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    IETVYIPE SRGTLC+SSQVGC+L C+FC TG Q   RNLT  EI+ Q+ 
Sbjct: 83  ---SVGAGNGIETVYIPETSRGTLCISSQVGCALACAFCSTGRQGFNRNLTVAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   L +    E           R I+NIVMMGMGEPL NF+NV  SL +  D      
Sbjct: 140 WANKALTETFTSE-------AGRERPITNIVMMGMGEPLTNFENVVTSLDLMLDDNAYGL 192

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG +P + R+ E   V LA+SLHA ++ LR+ LVPINRKYP+  L+ AC  
Sbjct: 193 SRRRVTVSTSGIIPAMDRLRERCPVALAVSLHAPNDALRDQLVPINRKYPIRELLGACER 252

Query: 273 YPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           Y  L +A R  ITFEYVML G+NDS   A  L+++++ IP K+NLIPFNP+P   +  S 
Sbjct: 253 Y--LQSAPRDFITFEYVMLDGVNDSVAQARELVQLVRDIPCKLNLIPFNPFPDSGFRRSS 310

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS-LSKRIPKVPRQEMQITG 384
              +  F + +  +G  + +R  RG DI AACGQL   +  +  +VPR   +  G
Sbjct: 311 ANAVSRFRDVLMEAGLVTTVRKTRGDDIAAACGQLAGKVLDKTRRVPRNIAEAAG 365


>gi|153948736|ref|YP_001400164.1| ribosomal RNA large subunit methyltransferase N [Yersinia
           pseudotuberculosis IP 31758]
 gi|170023536|ref|YP_001720041.1| ribosomal RNA large subunit methyltransferase N [Yersinia
           pseudotuberculosis YPIII]
 gi|205829929|sp|A7FFY6|RLMN_YERP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829933|sp|B1JS02|RLMN_YERPY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|152960231|gb|ABS47692.1| radical SAM domain protein, Cfr family [Yersinia pseudotuberculosis
           IP 31758]
 gi|169750070|gb|ACA67588.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis YPIII]
          Length = 398

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/363 (43%), Positives = 216/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSVDGTIKWAIKV------GDQQVETVYIPEADRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + S G R I+N+VM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 189

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  + A R Y     +N  R+T EYVML  INDS   A  L
Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQL 309

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369

Query: 363 GQL 365
           GQL
Sbjct: 370 GQL 372


>gi|300724166|ref|YP_003713483.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630700|emb|CBJ91365.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
           nematophila ATCC 19061]
          Length = 392

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/383 (42%), Positives = 224/383 (58%), Gaps = 33/383 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ +  + +G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 25  KINLLDLNRKQMRQFFIDMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q   I  PE+ +E+ S DGT KW +        G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 81  QVAEIKAPEVAEEQRSSDGTIKWAITV------GDQQVETVYIPEDDRATLCVSSQVGCA 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + S GR+ I+N+VM
Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSSGRRPITNVVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 184 MGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  +   R Y   SNA   R+T EYVML  +NDS   A  L
Sbjct: 244 APTDDIRDEIVPINRKYNIEEFLAGVRRYLTKSNANQGRVTVEYVMLDHVNDSVEQAHQL 303

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P+KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 304 AECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 363

Query: 363 GQL---------KSLSKRIPKVP 376
           GQL         ++L KR+   P
Sbjct: 364 GQLAGDVIDRTKRTLKKRLTGEP 386


>gi|238785318|ref|ZP_04629307.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           bercovieri ATCC 43970]
 gi|238713771|gb|EEQ05794.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           bercovieri ATCC 43970]
          Length = 398

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 164/383 (42%), Positives = 221/383 (57%), Gaps = 33/383 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAQMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKALRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+  E+ S DGT KW +        G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAQEQRSADGTIKWAITV------GDQQVETVYIPEADRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + S G R I+N+VM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 189

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALNL 302
           A ++D+RN +VPINRKY +E  + A R Y     +N  R+T EYVML  INDS   A  L
Sbjct: 250 APTDDIRNEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSVEQAHQL 309

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369

Query: 363 GQL---------KSLSKRIPKVP 376
           GQL         ++L KR+   P
Sbjct: 370 GQLAGEVIDRTKRTLKKRMAGEP 392


>gi|315123120|ref|YP_004065126.1| hypothetical protein PSM_B0177 [Pseudoalteromonas sp. SM9913]
 gi|315016880|gb|ADT70217.1| hypothetical protein PSM_B0177 [Pseudoalteromonas sp. SM9913]
          Length = 376

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 166/383 (43%), Positives = 229/383 (59%), Gaps = 21/383 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   KK +L+ + R+ + E  +  G        R  Q+ KWIY  G+ +F  MS++++++
Sbjct: 1   MTEQKKINLLDLNRDAMRELFVSFG----EKPFRGDQVMKWIYHFGVDNFDEMSNVNKKL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           +  L     I+ PEI   + + DGT K+ L      + G  E+E V+IPEK R TLCVSS
Sbjct: 57  KEKLKNECEIVAPEISVRQQASDGTIKYAL-----VLEGGQEVEAVWIPEKDRATLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C+FC T  Q   RNL   EI+ QV      +G       ++G    S  R ++
Sbjct: 112 QVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG-------LDG---NSEKRPVT 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  NV  ++ +  D  G   SKRR+TLSTSG VP +  + E+I V LA
Sbjct: 162 NVVMMGMGEPLLNVKNVVPAMELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299
           ISLHA  N LR+ILVPIN+KYP+E  + ACR Y   S A + +T EYVML G+NDS   A
Sbjct: 222 ISLHAPDNALRDILVPINKKYPIEEFLAACRRYIDGSKANKDVTIEYVMLNGVNDSTDQA 281

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+K LKG P+K+NLIPFNP+PG EY  S    I  FS+ ++ +G +  +R  RG DI 
Sbjct: 282 HELVKTLKGTPSKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRTRGDDID 341

Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381
           AACGQL   +  R  ++ +++M+
Sbjct: 342 AACGQLAGDVVDRTKRMAKKKMR 364


>gi|22125249|ref|NP_668672.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
           KIM 10]
 gi|45442520|ref|NP_994059.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51597160|ref|YP_071351.1| ribosomal RNA large subunit methyltransferase N [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808316|ref|YP_652232.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
           Antiqua]
 gi|108811419|ref|YP_647186.1| hypothetical protein YPN_1256 [Yersinia pestis Nepal516]
 gi|145599499|ref|YP_001163575.1| hypothetical protein YPDSF_2227 [Yersinia pestis Pestoides F]
 gi|149365342|ref|ZP_01887377.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125]
 gi|162419386|ref|YP_001605027.1| hypothetical protein YpAngola_A0421 [Yersinia pestis Angola]
 gi|165926002|ref|ZP_02221834.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937119|ref|ZP_02225684.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008394|ref|ZP_02229292.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212301|ref|ZP_02238336.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399541|ref|ZP_02305065.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421243|ref|ZP_02312996.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423347|ref|ZP_02315100.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|218929942|ref|YP_002347817.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
           CO92]
 gi|229838462|ref|ZP_04458621.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895163|ref|ZP_04510339.1| predicted enzyme [Yersinia pestis Pestoides A]
 gi|229899029|ref|ZP_04514173.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
 gi|229901676|ref|ZP_04516798.1| predicted enzyme [Yersinia pestis Nepal516]
 gi|270489871|ref|ZP_06206945.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27]
 gi|294504556|ref|YP_003568618.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003]
 gi|81638860|sp|Q667Z6|RLMN_YERPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123372276|sp|Q1C5I5|RLMN_YERPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123373337|sp|Q1CK94|RLMN_YERPN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123776892|sp|Q7CJM9|RLMN_YERPE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829931|sp|A9R805|RLMN_YERPG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829932|sp|A4TMU0|RLMN_YERPP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|21958119|gb|AAM84923.1|AE013737_5 hypothetical protein y1350 [Yersinia pestis KIM 10]
 gi|45437385|gb|AAS62936.1| Predicted Fe-S-cluster redox enzyme [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51590442|emb|CAH22082.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108775067|gb|ABG17586.1| hypothetical protein YPN_1256 [Yersinia pestis Nepal516]
 gi|108780229|gb|ABG14287.1| hypothetical protein YPA_2322 [Yersinia pestis Antiqua]
 gi|115348553|emb|CAL21493.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145211195|gb|ABP40602.1| hypothetical protein YPDSF_2227 [Yersinia pestis Pestoides F]
 gi|149291755|gb|EDM41829.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125]
 gi|162352201|gb|ABX86149.1| radical SAM domain protein, Cfr family [Yersinia pestis Angola]
 gi|165914982|gb|EDR33594.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922206|gb|EDR39383.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992776|gb|EDR45077.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206232|gb|EDR50712.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960732|gb|EDR56753.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052045|gb|EDR63453.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057517|gb|EDR67263.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681605|gb|EEO77699.1| predicted enzyme [Yersinia pestis Nepal516]
 gi|229687974|gb|EEO80046.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694828|gb|EEO84875.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701925|gb|EEO89948.1| predicted enzyme [Yersinia pestis Pestoides A]
 gi|262362449|gb|ACY59170.1| hypothetical protein YPD4_2263 [Yersinia pestis D106004]
 gi|262366544|gb|ACY63101.1| hypothetical protein YPD8_2426 [Yersinia pestis D182038]
 gi|270338375|gb|EFA49152.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27]
 gi|294355015|gb|ADE65356.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003]
 gi|320016019|gb|ADV99590.1| putative enzyme [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 398

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 159/363 (43%), Positives = 216/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSVDGTIKWAIKV------GDQQVETVYIPEADRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + S G R I+N+VM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 189

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  + A R Y     +N  R+T EYVML  INDS   A  L
Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQL 309

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369

Query: 363 GQL 365
           GQL
Sbjct: 370 GQL 372


>gi|261494121|ref|ZP_05990624.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496038|ref|ZP_05992448.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308288|gb|EEY09581.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310287|gb|EEY11487.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 415

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 159/363 (43%), Positives = 221/363 (60%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 47  EKINLLNLNRQEMRELFAEMG----EKPFRADQLMKWIYHFGEENFDNMSNINKVLREKL 102

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+  E+ S DGT KW ++       G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 103 KRIAEIKAPEVAVEQRSADGTIKWAMQV------GDQQIETVYIPEDDRATLCVSSQVGC 156

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL+  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 157 ALACTFCSTAQQGFNRNLSVAEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 206

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLSTSG VP + ++ E+I V LAISLH
Sbjct: 207 MGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLH 266

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ LVPIN+KY ++ML+D+   Y  +SNA   ++T EYVML  +NDS   A  L
Sbjct: 267 APNDELRDELVPINKKYNIKMLMDSVNKYLEVSNANHGKVTIEYVMLDHVNDSTDHAHQL 326

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 327 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVTVRKTRGDDIDAAC 386

Query: 363 GQL 365
           GQL
Sbjct: 387 GQL 389


>gi|295676905|ref|YP_003605429.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1002]
 gi|295436748|gb|ADG15918.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1002]
          Length = 383

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 150/341 (43%), Positives = 208/341 (60%), Gaps = 10/341 (2%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    +I  P +V + IS DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATITMPGVVSDHISSDGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNLT  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLR 143

Query: 153 LARSLLGDFPGCEDIEGMVIPSVG---RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           +A   L    G  D  G  I   G   R ++N+VMMGMGEPL N+D V  ++ +  D   
Sbjct: 144 MAEFALRASRG--DAGGRAIGGDGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNA 201

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
              S+RR+TLSTSG VP + R+G ++ V LA+SLHA ++ LR++LVP+N+KYPL  L+ A
Sbjct: 202 YGLSRRRVTLSTSGVVPMMDRLGADVPVALAVSLHASNDALRDVLVPLNKKYPLRELMAA 261

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           C  Y  ++    ITFEY ML G+NDS   A  L+ + + +P K NLIPFNP+P    + S
Sbjct: 262 CERYLKVAPRDFITFEYCMLDGVNDSEAHARELLAVTRDVPCKFNLIPFNPFPESGLIRS 321

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
             + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 322 KPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 362


>gi|89095332|ref|ZP_01168250.1| hypothetical protein MED92_00580 [Oceanospirillum sp. MED92]
 gi|89080407|gb|EAR59661.1| hypothetical protein MED92_00580 [Oceanospirillum sp. MED92]
          Length = 371

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 156/362 (43%), Positives = 221/362 (61%), Gaps = 20/362 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+G+   ++E    +IG      + R +Q+ KWI+  G   F  M++IS+ +R  L
Sbjct: 6   KKVNLLGLSPAKMEAFFDEIG----EKKFRATQVLKWIHQLGATSFDEMTNISKALRAKL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE++ EK S DGTRKW++R  +        +E V IP+  R TLCVSSQVGC
Sbjct: 62  EEVAEIREPEVLLEKTSKDGTRKWVIRTDSGS-----SVEAVLIPDGERKTLCVSSQVGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q    NLT  EI+ Q+ +A    G++               R +SN+V+
Sbjct: 117 SLDCSFCSTGKQGFNSNLTTAEIIGQLRIAIRSYGEYNTTSQ----------RVVSNVVL 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++++  +      SKRR+TLST+G VP I ++ E   V LAISLH
Sbjct: 167 MGMGEPLMNFDNVVDAITLMMEDNAYCLSKRRVTLSTAGVVPAIDKLREVTDVSLAISLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLI 303
           A ++DLR+ILVPIN++YP++ L+ AC  Y   L++ R IT EY ++ G+ND P  A  L+
Sbjct: 227 APNDDLRDILVPINKRYPIKELVAACNRYLDNLNDKRVITVEYTLINGVNDKPEHAKQLL 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           KIL+ +P+K+N+IPFNP+P   Y    ++ I+ F E I   G  + +R  RG +I AACG
Sbjct: 287 KILRRMPSKLNIIPFNPFPNSGYERPSEERILAFKEIIVHGGIVTTVRRTRGDEIDAACG 346

Query: 364 QL 365
           QL
Sbjct: 347 QL 348


>gi|212710618|ref|ZP_03318746.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
           30120]
 gi|212686699|gb|EEB46227.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
           30120]
          Length = 399

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 165/386 (42%), Positives = 225/386 (58%), Gaps = 33/386 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E   ++G        R  Q+ KWIY     DF  M+DI++ +R  L
Sbjct: 31  QKINLLDLNRKQMREFFAELG----EKPFRADQVMKWIYHYCFDDFDQMTDINKVLRAKL 86

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ DE+ S DGT KW ++       G   +ETVYIPE  R TLCVSSQVGC
Sbjct: 87  KEVAEIRAPEVADEQRSSDGTIKWAIKV------GDQLVETVYIPEADRATLCVSSQVGC 140

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIV 183
           +L C FC T  Q   RNL   EI+ QV  A  ++G            + S GR+ I+N+V
Sbjct: 141 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSSGRRPITNVV 189

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N +NV  ++ I  D  G   SKRR+T+STSG VP + ++G+ I V LAISL
Sbjct: 190 MMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISL 249

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301
           HA ++D+R+ +VPIN+KY +E  + +   Y   SNA   R+T EYVML  INDS   A  
Sbjct: 250 HAPTDDVRDEIVPINKKYNIETFLASVNRYLTKSNANAGRVTVEYVMLDHINDSVEQAHQ 309

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L + LK  P+KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AA
Sbjct: 310 LAECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAA 369

Query: 362 CGQL---------KSLSKRIPKVPRQ 378
           CGQL         ++L KR+   P Q
Sbjct: 370 CGQLAGDVIDRTKRTLKKRLAGEPIQ 395


>gi|302878623|ref|YP_003847187.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2]
 gi|302581412|gb|ADL55423.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2]
          Length = 363

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 155/333 (46%), Positives = 205/333 (61%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WIY  G  DF  M+DI+  +R+ L Q   I  P+IV E++S DGTRKWLL  
Sbjct: 24  FRAKQLLRWIYQVGESDFAAMTDIAAVLRNKLAQSACITVPDIVREELSDDGTRKWLL-- 81

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +E VYIPE +RGTLC+SSQ GC+L CSFC TG Q   RNLT  EI+ Q+ 
Sbjct: 82  ---SVGSGNAVEAVYIPESARGTLCISSQAGCALDCSFCSTGKQGFNRNLTVAEIIGQLW 138

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   LG     ++ EG         +SN+VMMGMGEPL NFDN   +L +  D      
Sbjct: 139 WANHQLG-----KNSEG------NWPVSNVVMMGMGEPLLNFDNTVSALRLMLDDQAYGL 187

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ EE  V LA+SLHA ++ LR+ LVP+N+KYPL+ L+ AC+ 
Sbjct: 188 SRRRVTVSTSGIVPAMDRLREECPVALAVSLHAPNDALRDKLVPVNQKYPLKELLGACQR 247

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML G+ND+ + A  L++++K  P K NLIPFNP+P   Y  S   
Sbjct: 248 YLEKAPRDFITFEYVMLDGVNDTVQHAHELVRLVKDTPCKFNLIPFNPFPLSPYKRSRPD 307

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F + + ++   +  R  RG DI AACGQL
Sbjct: 308 AIQRFRDVLMQADIITTTRKTRGDDIAAACGQL 340


>gi|192359958|ref|YP_001981965.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
 gi|190686123|gb|ACE83801.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
          Length = 402

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 160/362 (44%), Positives = 215/362 (59%), Gaps = 21/362 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM   +L      IG      + R  Q+ KWI+  G  +F  MS++S+ +R  L 
Sbjct: 32  KVNLLGMPEAKLIAFFESIG----EKKFRAIQVMKWIHQLGADNFDDMSNVSKALRAKLK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V +  S DGTRK+L+R      GG V +ETV+IP+  RGTLCVSSQVGCS
Sbjct: 88  DCAEIYAPEVVRQLDSADGTRKFLIRVA----GGNV-VETVFIPDGDRGTLCVSSQVGCS 142

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   R+LTA EI+ QV +A    G              +  R ++N+VMM
Sbjct: 143 LDCSFCATGKQGFNRDLTAAEIIGQVWIAAKSFGQLQA----------NGPRTVTNVVMM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++++         SKRR+TLSTSG VP + R+ +     LAISLHA
Sbjct: 193 GMGEPLLNFDNVVDAMNLMMHDNAYGISKRRVTLSTSGVVPQLDRLSQYTDACLAISLHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALNLI 303
            +++LRN LVPINRKYP+ ML+D+ R Y        R+IT EY ++  +ND P+ A  L 
Sbjct: 253 PNDELRNELVPINRKYPIAMLLDSARRYIQSMPDTHRKITIEYTLIDQVNDRPQHAQQLA 312

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L+ +P KINLIPFNP+    Y       +  F + + + GY + +RT RG DI AACG
Sbjct: 313 ELLRDVPVKINLIPFNPFNLSNYKRVSNNALRKFQDILMQEGYITTVRTTRGDDIDAACG 372

Query: 364 QL 365
           QL
Sbjct: 373 QL 374


>gi|71065245|ref|YP_263972.1| hypothetical protein Psyc_0679 [Psychrobacter arcticus 273-4]
 gi|123748144|sp|Q4FTX0|RLMN_PSYA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|71038230|gb|AAZ18538.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 409

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 161/369 (43%), Positives = 223/369 (60%), Gaps = 20/369 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM + +L +    IG        R++Q+ KWIY +G+ DF+ M+++S+ +R  L+
Sbjct: 28  KTNLLGMTQAQLADYFKSIG----EKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLS 83

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120
            +  +I P+++  + S DGTRKW+        GG + +ETV IP        R TLC+SS
Sbjct: 84  ANACVIPPKVIHRQYSDDGTRKWVFE----VTGGSL-VETVLIPADDSKLNGRKTLCISS 138

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKI 179
           QVGC+L CSFC TG Q   R+LTA EIL Q+ +A  S + D    + +E +        +
Sbjct: 139 QVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYMSD--ENDSLENIDHSLWENNV 196

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+  V  S+ +         SKRR+TLSTSG VP +  + +E+ V L
Sbjct: 197 TNVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAKELDVAL 256

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGINDSP 296
           AISLHA +++LRN LVPIN+KYPLE L+ A R+Y    N R    +T EYVML G+NDS 
Sbjct: 257 AISLHAPNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSN 316

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L+ +L  +P+KINLIPFNP+P   Y  S    I  FS  +  +G+   IR  RG 
Sbjct: 317 EHAEQLVALLGDLPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTIRQTRGD 376

Query: 357 DILAACGQL 365
           DI AACGQL
Sbjct: 377 DIDAACGQL 385


>gi|167854516|ref|ZP_02477297.1| hypothetical protein HPS_02019 [Haemophilus parasuis 29755]
 gi|167854271|gb|EDS25504.1| hypothetical protein HPS_02019 [Haemophilus parasuis 29755]
          Length = 386

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 158/363 (43%), Positives = 218/363 (60%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++ +R  L
Sbjct: 18  EKINLLNLNRQQMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMTNINKVLREKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+  E+ S DGT KW +        G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 74  KRIAEIKAPEVAVEQRSADGTIKWAMWV------GDQQIETVYIPEDDRATLCVSSQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL+  EI+ QV  A  ++G+F G   I         R I+N+VM
Sbjct: 128 ALACTFCSTAQQGFNRNLSVSEIIGQVWRASKIIGNF-GVTGI---------RPITNVVM 177

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLSTSG VP + ++ E+I V LAISLH
Sbjct: 178 MGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLH 237

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LRN L+P+N+KY ++MLID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 238 APNDELRNELIPLNKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLSHVNDDVEHAHQL 297

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P+KINLIP+NP+P   Y  S    I  F + +   G++  +R  RG DI AAC
Sbjct: 298 ADVLKNTPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVTVRKTRGDDIHAAC 357

Query: 363 GQL 365
           GQL
Sbjct: 358 GQL 360


>gi|209521129|ref|ZP_03269857.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160]
 gi|209498439|gb|EDZ98566.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160]
          Length = 383

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 150/341 (43%), Positives = 208/341 (60%), Gaps = 10/341 (2%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    +I  P +V + IS DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATITMPGVVSDHISSDGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNLT  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLR 143

Query: 153 LARSLLGDFPGCEDIEGMVIPSVG---RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           +A   L    G  D  G  +   G   R ++N+VMMGMGEPL N+D V  ++ +  D   
Sbjct: 144 MAEFALRASRG--DAGGRAMGGDGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNA 201

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
              S+RR+TLSTSG VP + R+G ++ V LA+SLHA ++ LR+ LVP+N+KYPL  L+ A
Sbjct: 202 YGLSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPNDALRDELVPLNKKYPLRELMAA 261

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           C  Y  ++    ITFEY ML G+NDS   A  L+ + + +P K NLIPFNP+P    + S
Sbjct: 262 CERYLKVAPRDFITFEYCMLDGVNDSEAHARQLLAVTRDVPCKFNLIPFNPFPESGLIRS 321

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
            Q+ I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 322 KQEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 362


>gi|148653702|ref|YP_001280795.1| radical SAM protein [Psychrobacter sp. PRwf-1]
 gi|205829828|sp|A5WGQ4|RLMN_PSYWF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|148572786|gb|ABQ94845.1| radical SAM enzyme, Cfr family [Psychrobacter sp. PRwf-1]
          Length = 403

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 160/372 (43%), Positives = 219/372 (58%), Gaps = 25/372 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   K +++GM +E+L      IG        R +Q+ KWIY  G+ DF  M+++S+ +R
Sbjct: 19  NAPTKTNILGMNQEQLGAYFKHIG----EKPFRATQVMKWIYQHGVTDFAQMTNLSKGLR 74

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE-----KSRGTL 116
             L++   I  PE++ ++ S DGTRKW+ +     + G   +ETV IP        R TL
Sbjct: 75  EKLSEQACIELPEVMHKEFSEDGTRKWVFK-----VAGGSLVETVLIPADDSKVNGRKTL 129

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           C+SSQVGC+L CSFC TG Q   R+LTA EI+ Q+ +A +          +EG+      
Sbjct: 130 CISSQVGCALDCSFCSTGKQGFERDLTAAEIIGQLWVANASY--------MEGVDSTEWQ 181

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
             ++N+VMMGMGEPL N+  V  S+ +         SKRR+TLSTSG VP +  + ++I 
Sbjct: 182 NNVTNVVMMGMGEPLLNYTPVVSSMGLMLSDHAYGLSKRRVTLSTSGVVPKMYELYKDID 241

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGIN 293
           V LAISLHA +++LRN LVPIN+KYPL  LI A + Y   +N R    +T EYVML G+N
Sbjct: 242 VALAISLHAPNDELRNELVPINKKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVN 301

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           DS   A  L+ +L G+P+KINLIPFNP+P   Y  S    I  FS  +  +G+   IR  
Sbjct: 302 DSDEHAQQLVALLDGLPSKINLIPFNPFPHAPYDRSSNNRIHAFSNILNNAGFVCTIRQT 361

Query: 354 RGLDILAACGQL 365
           RG DI AACGQL
Sbjct: 362 RGDDIDAACGQL 373


>gi|270264732|ref|ZP_06192997.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
 gi|270041415|gb|EFA14514.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
          Length = 398

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 159/362 (43%), Positives = 215/362 (59%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   K+G        R  Q+ KWIY     DF+ M+DI++ +R+ L 
Sbjct: 31  KINLLDLNRQQMREFFAKMG----EKPFRADQVMKWIYHYCCDDFEQMTDINKVLRNKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+ +E+ S DGT KW +        G  ++ETV+IP+  R TLCVSSQVGC+
Sbjct: 87  SVAEIRAPEVAEEQRSADGTIKWAITV------GDQQVETVFIPDGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G      +          R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGE----------RPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++ +R+ +VPINRKY +E  + A R Y   SNA   R+T EYVML  INDS  DA  L 
Sbjct: 251 PNDKIRDEIVPINRKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QL 365
           QL
Sbjct: 371 QL 372


>gi|153873084|ref|ZP_02001783.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152070449|gb|EDN68216.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 358

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 155/337 (45%), Positives = 204/337 (60%), Gaps = 19/337 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +Q+ KWI+ + + DF  M+++S+ +R  L +   I  P++   +IS D TRKWLL+ 
Sbjct: 15  FRATQVMKWIHQQAVLDFDAMTNLSKTLRQRLKEIACISLPQVYKTQISQDDTRKWLLQ- 73

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IE V+IPE  RGTLC+SSQ+GC+L CSFC T  Q   RNL   EI+ Q+ 
Sbjct: 74  ----LDNGNSIEMVFIPEDGRGTLCISSQIGCALDCSFCATAQQGFNRNLNTAEIIAQLW 129

Query: 153 LARSLL----GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           LA   L     D P           +  R ISN+VMMGMGEPL N +NV K++ I  D  
Sbjct: 130 LAEHQLCSTKDDRPK----------NYQRTISNVVMMGMGEPLTNLNNVIKAIKIMKDDF 179

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           G   S +RITLST+G VP   R+ E+  V LA+SLHA  + LR+ LVPIN+KYP+  L+ 
Sbjct: 180 GYGLSWQRITLSTAGIVPAFKRLKEQCPVSLAVSLHAPDDALRDQLVPINKKYPINELLA 239

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           ACR Y      R ITFEY+MLK INDS   A  L+K+++GIPAK+NLIPFN +P   Y  
Sbjct: 240 ACRAYVKGEPRRTITFEYIMLKNINDSQSHAHALVKLIQGIPAKVNLIPFNTFPDTPYQS 299

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S  K I  F + + ++G  +  R  RG DI AACGQL
Sbjct: 300 SSIKTIDDFRDILLKAGLITITRKTRGDDIDAACGQL 336


>gi|332534669|ref|ZP_08410500.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035881|gb|EGI72363.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 376

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 162/366 (44%), Positives = 220/366 (60%), Gaps = 20/366 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   KK +L+ + R+ + E     G        R+ Q+ KWIY  G+ +F  M+++++++
Sbjct: 1   MTEQKKINLLDLNRDAMRELFASFG----EKPFRSDQVMKWIYHFGVDNFDEMTNVNKKL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           +  L     I+ PEI   + + DGT K+ L      + G  E+E V+IPEK R TLCVSS
Sbjct: 57  KEKLKAECEIVAPEITVRQQASDGTIKYAL-----ILEGGQEVEAVWIPEKERATLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C+FC T  Q   RNL   EI+ QV      +G       ++G    S  R ++
Sbjct: 112 QVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG-------LDGH---SEKRPVT 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  NV  ++ +  D  G   SKRR+TLSTSG VP +  + E+I V LA
Sbjct: 162 NVVMMGMGEPLLNLKNVVPAMELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299
           ISLHA  N LR+ILVP+N+KYP+E  + ACR Y   S A + +T EYVML GINDS   A
Sbjct: 222 ISLHAPDNALRDILVPVNKKYPIEEFLAACRRYIDGSKANKDVTVEYVMLNGINDSTDQA 281

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L++ LKG P+K+NLIPFNP+PG EY  S    I  FS+ ++ +G +  +R  RG DI 
Sbjct: 282 HALVQTLKGTPSKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGVTCIVRRTRGDDID 341

Query: 360 AACGQL 365
           AACGQL
Sbjct: 342 AACGQL 347


>gi|238794833|ref|ZP_04638434.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           intermedia ATCC 29909]
 gi|238725846|gb|EEQ17399.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           intermedia ATCC 29909]
          Length = 398

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 158/363 (43%), Positives = 216/363 (59%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ +   ++G        R  Q+ KWIY     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMRQFFAEMG----EKPFRADQVMKWIYHYCFDDFEQMTDINKVLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVTEEQRSTDGTIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + + G R I+N+VM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG-----------AVKATGIRPITNVVM 189

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  + A R Y     +N  R+T EYVML  INDS   A  L
Sbjct: 250 APTDDIRDEIVPINRKYNIEAFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSVEQAHQL 309

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369

Query: 363 GQL 365
           GQL
Sbjct: 370 GQL 372


>gi|292489050|ref|YP_003531937.1| hypothetical protein EAMY_2582 [Erwinia amylovora CFBP1430]
 gi|292900179|ref|YP_003539548.1| hypothetical protein EAM_2478 [Erwinia amylovora ATCC 49946]
 gi|291200027|emb|CBJ47152.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
 gi|291554484|emb|CBA22015.1| UPF0063 protein yfgB [Erwinia amylovora CFBP1430]
 gi|312173205|emb|CBX81460.1| UPF0063 protein yfgB [Erwinia amylovora ATCC BAA-2158]
          Length = 388

 Score =  288 bits (738), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 163/365 (44%), Positives = 218/365 (59%), Gaps = 24/365 (6%)

Query: 5   KKE--SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
           KKE  +L+ + R+++ E    +G        R  Q+ KWIY     DF  M+DI++  R+
Sbjct: 18  KKEKINLLDLNRQQMREFFASLG----EKPFRADQVMKWIYHYCCDDFNEMTDINKVFRN 73

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L +   I  PE+ +E+ S DGT KW ++     +GG  ++ETVYIPEK R TLCVSSQV
Sbjct: 74  RLQELAEIRAPEVAEEQRSADGTIKWAIQ-----VGGQ-QVETVYIPEKDRATLCVSSQV 127

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+
Sbjct: 128 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNV 177

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAIS
Sbjct: 178 VMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAIS 237

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDAL 300
           LHA ++ +R+ +VPIN+KY +E  + +   Y G SNA   R+T EYVML  INDS  +A 
Sbjct: 238 LHAPNDTIRDEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAH 297

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L  +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI A
Sbjct: 298 ELAALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDA 357

Query: 361 ACGQL 365
           ACGQL
Sbjct: 358 ACGQL 362


>gi|254513997|ref|ZP_05126058.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
 gi|219676240|gb|EED32605.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
          Length = 381

 Score =  288 bits (738), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 154/360 (42%), Positives = 213/360 (59%), Gaps = 21/360 (5%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+GM R +LE+  L +G      R R  Q+ KW++ +G  DF  MS++ + +R  L   
Sbjct: 15  NLLGMSRTQLEDFFLGLG----EKRFRAQQLMKWMHHQGECDFSAMSNLGKALRERLAAI 70

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             +  P +  +  S DGTRKWL+R     + G   +ETV IP+ +R TLCVSSQVGCSL 
Sbjct: 71  AEVRPPPVESQHDSSDGTRKWLVR-----VDGGGLVETVLIPDGNRATLCVSSQVGCSLD 125

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC TG Q   R+L+A EI+ QV LA +    F              GR ++N+VMMGM
Sbjct: 126 CSFCSTGKQGFQRDLSAAEIIGQVWLAINSYDAFKSGN----------GRVVTNVVMMGM 175

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP + ++ E     LA+SLHA +
Sbjct: 176 GEPLLNFDNVVTAMDLMMDDLGYGISKRRVTLSTSGVVPALDKLAEVSEASLAVSLHAPN 235

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKI 305
           ++LRN LVP+NR+YP+  L+D+ R Y      ++  +T EY ++ G+ND P  A  L  +
Sbjct: 236 DELRNQLVPVNRRYPIAQLLDSARRYIDAQKDKKRVVTIEYTLMAGVNDQPDQARELATL 295

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L   P KINLIPFNP+P   Y       +  F + +  +G+   +RT RG DI AACGQL
Sbjct: 296 LADFPCKINLIPFNPFPNSGYERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAACGQL 355


>gi|296158994|ref|ZP_06841822.1| radical SAM enzyme, Cfr family [Burkholderia sp. Ch1-1]
 gi|295890869|gb|EFG70659.1| radical SAM enzyme, Cfr family [Burkholderia sp. Ch1-1]
          Length = 383

 Score =  288 bits (737), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 149/339 (43%), Positives = 207/339 (61%), Gaps = 6/339 (1%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    +I  P IV + IS DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATISMPGIVSDHISTDGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNLT  EI+ Q+ 
Sbjct: 88  ----VGNSNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLR 143

Query: 153 LARSLLGDFPGCEDIEGMVIPSVG-RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +A   L    G +          G R ++N+VMMGMGEPL N+D V  ++ +  D     
Sbjct: 144 MAEFALRASRGVDGGRATGGDGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYG 203

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+TLSTSG VP + R+G ++ V LA+SLHA S+ LR++LVP+N+KYPL  L+ AC+
Sbjct: 204 LSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLVPLNKKYPLRELMAACQ 263

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y  ++    ITFEY ML G+NDS   A  L+ + + +P K NLIPFNP+P    + S  
Sbjct: 264 RYLKVAPRDFITFEYCMLDGVNDSEAQARELLAVTRDVPCKFNLIPFNPFPESGLIRSKP 323

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 324 EQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAVK 362


>gi|126640570|ref|YP_001083554.1| putative Fe-S-cluster redox enzyme [Acinetobacter baumannii ATCC
           17978]
          Length = 376

 Score =  288 bits (737), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 169/363 (46%), Positives = 223/363 (61%), Gaps = 25/363 (6%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M R ELE+    IG      + R  Q+ KWI+   + DF  M++IS ++R  L Q   I 
Sbjct: 1   MSRAELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIK 56

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----SRGTLCVSSQVGCSLT 127
            PE+V    S DGTRKW+ R      G    +ETV IP +    SR TLC+SSQVGC+L 
Sbjct: 57  APEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISSQVGCALD 113

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           CSFC TG Q   R+LT +EI+ Q+ +A  S + + P  E           R ++N+VMMG
Sbjct: 114 CSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAER---------ERSVTNVVMMG 164

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V LAISLHA 
Sbjct: 165 MGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAP 224

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGINDSPRDALNL 302
           +++LRN LVPIN+KYPL  LI AC+ Y    G  +AR+ +T EYVML+G+ND P  A  L
Sbjct: 225 NDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQPEHAQQL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  RG DI AAC
Sbjct: 285 LKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAAC 344

Query: 363 GQL 365
           GQL
Sbjct: 345 GQL 347


>gi|187924520|ref|YP_001896162.1| radical SAM enzyme, Cfr family [Burkholderia phytofirmans PsJN]
 gi|205829686|sp|B2SXT2|RLMN_BURPP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|187715714|gb|ACD16938.1| radical SAM enzyme, Cfr family [Burkholderia phytofirmans PsJN]
          Length = 383

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 149/339 (43%), Positives = 207/339 (61%), Gaps = 6/339 (1%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    +I  P IV + IS DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATISMPGIVSDNISTDGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNLT  EI+ Q+ 
Sbjct: 88  ----VGNSNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTAEIIGQLR 143

Query: 153 LARSLLGDFPGCEDIEGMVIPSVG-RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +A   L    G +          G R ++N+VMMGMGEPL N+D V  ++ +  D     
Sbjct: 144 MAEFALRASRGIDGGRATGGDGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYG 203

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+TLSTSG VP + R+G ++ V LA+SLHA S+ LR++LVP+N+KYPL  L+ AC+
Sbjct: 204 LSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLVPLNKKYPLRELMAACQ 263

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y  ++    ITFEY ML G+NDS   A  L+ + + +P K NLIPFNP+P    + S  
Sbjct: 264 RYLKVAPRDFITFEYCMLDGVNDSEAQARELLALTRDVPCKFNLIPFNPFPESGLIRSKP 323

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 324 EQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAVK 362


>gi|237654050|ref|YP_002890364.1| radical SAM protein [Thauera sp. MZ1T]
 gi|237625297|gb|ACR01987.1| radical SAM enzyme, Cfr family [Thauera sp. MZ1T]
          Length = 382

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/339 (45%), Positives = 211/339 (62%), Gaps = 13/339 (3%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI-VDEKISCDGTRKWLLR 91
            R  Q+ +W++  G  DF  M+D+++ +R  L +  ++I P + V + IS DGTRKWLL 
Sbjct: 29  FRARQVMRWMHHEGCDDFDAMTDVAKSLRAKL-KDLAVIRPPVPVRDSISADGTRKWLLD 87

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    +ETV+IPE SRGTLCVSSQ GC+L C+FC TG Q   RNL+A EI+ Q+
Sbjct: 88  -----VGNANAVETVFIPETSRGTLCVSSQAGCALDCAFCSTGKQGFNRNLSAAEIIGQL 142

Query: 152 LLARSLLGDFPG-----CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
            LA  LLG           D+E     + GR ISN+VMMGMGEPL NFDNV  +L +  D
Sbjct: 143 WLANKLLGAARADAEEHATDLEAGEKDN-GRIISNVVMMGMGEPLANFDNVVTALRLMLD 201

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
                 S+RR+T+STSG VP + R+ +E  V LA+SLHA ++ LR+ LVPIN+KYPL  L
Sbjct: 202 DHAYGLSRRRVTVSTSGIVPAMDRLRDECPVALAVSLHASNDALRDRLVPINQKYPLREL 261

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           + AC+ Y   +    +TFEYVML+G+NDS   A  L+ +++  P K NLIPFNP+P   +
Sbjct: 262 MAACQRYLERAPRDFVTFEYVMLEGVNDSDAHARELVALVRDTPCKFNLIPFNPFPDSGF 321

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             S  + I  F+  +  +G  +  R  RG D+ AACGQL
Sbjct: 322 QRSPAERIRRFAGILIDAGIVTTTRKTRGDDVDAACGQL 360


>gi|78484965|ref|YP_390890.1| hypothetical protein Tcr_0620 [Thiomicrospira crunogena XCL-2]
 gi|123741643|sp|Q31I07|RLMN_THICR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78363251|gb|ABB41216.1| radical SAM enzyme, Cfr family [Thiomicrospira crunogena XCL-2]
          Length = 370

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 162/361 (44%), Positives = 214/361 (59%), Gaps = 21/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+GM R EL E    IG        R +Q+ KWI+  G+ DF+ M++IS+ +R  L+
Sbjct: 8   KVDLLGMDRAELTEFFASIG----EKPFRAAQVMKWIHQFGVSDFEEMTNISKSLREKLS 63

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P+IV E+ S DGT KWLL            +E V+IPEKSRGTLC+SSQVGC+
Sbjct: 64  KTALIRTPKIVSEQRSADGTIKWLLEVDNHNC-----VEAVFIPEKSRGTLCISSQVGCA 118

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL   EI+ Q+ +A   LG    C+       P   R ISN+V M
Sbjct: 119 LECSFCSTGQQGFNRNLENWEIVAQMWVANKALG----CK-------PKEERIISNVVFM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  +   +  I  D      SKRR+T+ST+G VP I ++ E + V LAISLHA
Sbjct: 168 GMGEPLLNVKHTFPTARILMDDNAYGLSKRRVTISTAGVVPAIDKIKESLDVSLAISLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            +N LR+ LVPIN+KYPLE+L+ A   Y  G  + + +T EYVML  +ND    A  LI+
Sbjct: 228 PNNALRDELVPINKKYPLEVLMPALHRYVEGGHSKKHVTVEYVMLDHVNDRLEHAQQLIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  +P K+NLIPFNP+P  +Y  S    +  F + +  +G +  +R  RG DI AACGQ
Sbjct: 288 LLGDLPCKVNLIPFNPFPNTDYKRSSNNAVHRFKDALMEAGVNCTVRRTRGDDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|297538107|ref|YP_003673876.1| radical SAM enzyme, Cfr family [Methylotenera sp. 301]
 gi|297257454|gb|ADI29299.1| radical SAM enzyme, Cfr family [Methylotenera sp. 301]
          Length = 374

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/349 (43%), Positives = 211/349 (60%), Gaps = 18/349 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G+ DF+ M+DI++ +R  L     I  P +  E++S DGTRKWL+  
Sbjct: 31  FRAKQLMRWMHHFGVYDFEQMTDIAKVLREKLVVDAEITLPNVQLEQVSNDGTRKWLI-- 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                     IETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNL+  EI+ Q+ 
Sbjct: 89  ---GTDTANSIETVFIPEDDRGTLCISSQVGCALECTFCSTGRQGFNRNLSVSEIIGQLA 145

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   L    G +     ++ +  R ISN+VMMGMGEPL N+DNV  ++ I  D      
Sbjct: 146 IANQSLRQESGYD-----LLSANDRIISNVVMMGMGEPLANYDNVVTAMQIMLDDNAYGL 200

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+TLSTSG VP + R+ E+  V LA+SLHA ++ LR+++VPIN+KYPL+ L+ AC  
Sbjct: 201 SRRRVTLSTSGMVPAMDRLKEDCPVALAVSLHAPNDALRDVIVPINKKYPLKELMAACNR 260

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    +TFEYVML G+ND+   A  L+ +++ +  K NLIPFNP+P   Y  S   
Sbjct: 261 YLEKAPRDFVTFEYVMLDGVNDTVEHAHQLLDLVRNVSCKFNLIPFNPFPNSGYDTSKAS 320

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--------KSLSKRIP 373
            I  F + + ++GY   +R  RG DI AACGQL        K  + RIP
Sbjct: 321 HIRVFRDILMQAGYVVTVRKTRGEDIDAACGQLAGKVLDKTKRTANRIP 369


>gi|308050460|ref|YP_003914026.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307632650|gb|ADN76952.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 372

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 158/355 (44%), Positives = 210/355 (59%), Gaps = 18/355 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G  DF+ M++I++ +R  L +   I+ PEI   + S DGT K+ +  
Sbjct: 27  FRADQVMKWIYHFGADDFEQMTNINKALRAKLAERAVIVAPEISTSQHSSDGTIKFAID- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G   E+ETVYIPE  R TLCVSSQVGC+L CSFC T  Q   RNL+  EI+ QV 
Sbjct: 86  ----VGNGQEVETVYIPESDRATLCVSSQVGCALECSFCSTAQQGFNRNLSVAEIIGQVW 141

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                LG          +   +  R ISN+VMMGMGEPL N  NV  ++ I  D  G   
Sbjct: 142 RVAKYLG----------LKNETGERPISNVVMMGMGEPLLNLSNVVPAMDIMLDDFGFGL 191

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           SKRR+TLSTSG VP + ++G+ I V LAISLHA +++LR++LVP+N+KY +E  + + R 
Sbjct: 192 SKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDELRDVLVPVNKKYNIETFLASVRT 251

Query: 273 Y--PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           Y     +N  R+T EYVML  INDS   A  L K++K  P KINLIPFNP+PG  Y  S 
Sbjct: 252 YLTKSYANKGRVTVEYVMLDHINDSTDQAHELAKVMKDTPCKINLIPFNPYPGSPYGKSS 311

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL-KSLSKRIPKVPRQEMQITG 384
              I  F++ +   G +  +R  RG DI AACGQL   +  R  ++ ++ MQ  G
Sbjct: 312 NSRIDRFAKVLMEYGMTVIVRKTRGDDIDAACGQLVGDVRDRTKRMLKKRMQEDG 366


>gi|91784209|ref|YP_559415.1| hypothetical protein Bxe_A1592 [Burkholderia xenovorans LB400]
 gi|123358658|sp|Q13X26|RLMN_BURXL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|91688163|gb|ABE31363.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia xenovorans
           LB400]
          Length = 383

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 149/339 (43%), Positives = 207/339 (61%), Gaps = 6/339 (1%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    +I  P IV + IS DGTRKWL+  
Sbjct: 29  FRARQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATISMPGIVSDHISTDGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNLT  EI+ Q+ 
Sbjct: 88  ----VGNSNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLR 143

Query: 153 LARSLLGDFPGCEDIEGMVIPSVG-RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +A   L    G +          G R ++N+VMMGMGEPL N+D V  ++ +  D     
Sbjct: 144 MAEFALRASRGVDGGRATGGDGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYG 203

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+TLSTSG VP + R+G ++ V LA+SLHA S+ LR++LVP+N+KYPL  L+ AC+
Sbjct: 204 LSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLVPLNKKYPLRELMAACQ 263

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y  ++    ITFEY ML G+NDS   A  L+ + + +P K NLIPFNP+P    + S  
Sbjct: 264 RYLKVAPRDFITFEYCMLDGVNDSEAQARELLAVTRDVPCKFNLIPFNPFPESGLIRSKP 323

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 324 EQIKRFAQVLMDAGVITTVRKTRGDDIDAACGQLAGAVK 362


>gi|291327220|ref|ZP_06127407.2| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
 gi|291311232|gb|EFE51685.1| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
          Length = 426

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 162/384 (42%), Positives = 224/384 (58%), Gaps = 33/384 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E   ++G        R  Q+ KWIY     DF  M+DI++ +R  L
Sbjct: 58  QKTNLLDLNRKQMREFFAQMG----EKPFRADQVMKWIYHYCYDDFDQMTDINKVLRAKL 113

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ DE+ S DGT KW ++       G   +ETVYIPE  R TLCVSSQVGC
Sbjct: 114 KEVAEIRAPEVADEQRSSDGTIKWAIKV------GDQLVETVYIPEADRATLCVSSQVGC 167

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIV 183
           +L C FC T  Q   RNL   EI+ QV  A  ++G            + S GR+ I+N+V
Sbjct: 168 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSSGRRPITNVV 216

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N +NV  ++ I  D  G   SKRR+T+STSG VP + ++G+ I V LAISL
Sbjct: 217 MMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISL 276

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301
           HA ++D+R+ +VPIN+KY +E  +++   Y   SNA   R+T EYVML  +NDS   A  
Sbjct: 277 HAPTDDIRDDIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHVNDSVEQAHQ 336

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L + LK  P+KINLIP+NP+PG  Y  S    I  F + +   G+++ +R  RG DI AA
Sbjct: 337 LAECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFCKVLMGYGFTTIVRKTRGDDIDAA 396

Query: 362 CGQL---------KSLSKRIPKVP 376
           CGQL         ++L KR+   P
Sbjct: 397 CGQLAGDVIDRTKRTLKKRLAGEP 420


>gi|157144549|ref|YP_001451868.1| ribosomal RNA large subunit methyltransferase N [Citrobacter koseri
           ATCC BAA-895]
 gi|205829699|sp|A8AD69|RLMN_CITK8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157081754|gb|ABV11432.1| hypothetical protein CKO_00268 [Citrobacter koseri ATCC BAA-895]
          Length = 388

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 164/379 (43%), Positives = 221/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 21  KINLLDLNRQQMREFFKELG----EKPFRADQVMKWMYHYCSDNFDEMTDINKVLRGKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPINRKY +E  +DA R Y   SNA   R+T EYVML  IND    A  L 
Sbjct: 241 PNDEIRDEIVPINRKYNIETFLDAVRRYLQKSNANQGRVTIEYVMLDHINDGTEHAHQLA 300

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 360

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379


>gi|329297584|ref|ZP_08254920.1| ribosomal RNA large subunit methyltransferase N [Plautia stali
           symbiont]
          Length = 376

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 163/379 (43%), Positives = 222/379 (58%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E  +++G        R  Q+ KW+Y     DF+ M+DI++ +R  L
Sbjct: 8   EKINLLDLNRQQMREFFVEMG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRGKL 63

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+ +E  S DGT KW +R       G   +ETVYIPE  R TLCVSSQVGC
Sbjct: 64  MQRAEIRAPEVAEEMRSSDGTIKWAIRV------GDQLVETVYIPEADRATLCVSSQVGC 117

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VM
Sbjct: 118 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVM 167

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 168 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VPIN+KY +E  + A + Y G SNA   R+T EYVML  +NDS   A  L
Sbjct: 228 APNDTIRDDIVPINKKYNIEAFLAAVKRYIGKSNANQGRVTIEYVMLDHVNDSTEHAHEL 287

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 288 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 347

Query: 363 GQLK-SLSKRIPKVPRQEM 380
           GQL   +  R  +  R++M
Sbjct: 348 GQLAGDVIDRTKRTLRKKM 366


>gi|33151554|ref|NP_872907.1| hypothetical protein HD0319 [Haemophilus ducreyi 35000HP]
 gi|81423849|sp|Q7VNZ4|RLMN_HAEDU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33147774|gb|AAP95296.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 393

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/363 (44%), Positives = 217/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ M R+E+ E L  +G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKVNLMNMTRQEMREFLANLG----EKPFRADQLMKWIYHFGEDEFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  P I  E+ S DGT KW ++       G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KKVAEIKAPAIAIEQRSSDGTIKWAMQV------GNQQIETVYIPEGDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F     I G+      R I+N+VM
Sbjct: 135 ALECKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GITGV------RPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP +  + E+I V LAISLH
Sbjct: 185 MGMGEPLLNMNNVIPAMQIMLDDFAYGLSKRRVTLSTAGVVPALDLMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +N+LRN ++PIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 245 APNNELRNEIMPINKKYNIKMLMDSVAKYLAVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364

Query: 363 GQL 365
           GQL
Sbjct: 365 GQL 367


>gi|254283024|ref|ZP_04957992.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
 gi|219679227|gb|EED35576.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
          Length = 380

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 156/362 (43%), Positives = 213/362 (58%), Gaps = 21/362 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM R ++E     +G      R R  Q+ KWI+  G+ D + M+ + + +R  L+
Sbjct: 16  KVNLLGMSRAQMEVFFTDLG----EKRFRAGQVMKWIHHHGVSDIEAMTTLGKALRERLS 71

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PEI D+K S DGTRKW +R     + G   +E V IPE SR TLCVSSQVGCS
Sbjct: 72  SIAEVRPPEIADQKDSADGTRKWAIR-----VDGGALVEAVLIPEGSRATLCVSSQVGCS 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC TG Q   R+LT+ EI+ QV LA      F   +          GR ++N+VMM
Sbjct: 127 LDCKFCSTGKQGFQRDLTSAEIIGQVWLAIKSYDAFQSGK----------GRVVTNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  S+S+ +D      SKRR+TLSTSG VP + ++ E   V LAISLH 
Sbjct: 177 GMGEPLLNFDNVVSSMSLMTDDWAYGLSKRRVTLSTSGVVPALDKLAECSDVSLAISLHG 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARR-ITFEYVMLKGINDSPRDALNLI 303
            ++++RN +VPIN++YP+  L+ + R+Y    S+ +R +T EY +L G+ND    A  L 
Sbjct: 237 PTDEIRNRIVPINKRYPIAELLRSARNYIDAQSDTKRVVTIEYTLLAGVNDQVEHARQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LK  P KINLIPFN +P   +       +  F + +  +GY   +RT RG DI AACG
Sbjct: 297 VLLKDFPCKINLIPFNDFPHSGFTRPSGNAVSRFWQVLIDAGYVVTVRTTRGDDIDAACG 356

Query: 364 QL 365
           QL
Sbjct: 357 QL 358


>gi|146312652|ref|YP_001177726.1| hypothetical protein Ent638_3011 [Enterobacter sp. 638]
 gi|205829755|sp|A4WD95|RLMN_ENT38 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145319528|gb|ABP61675.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter sp. 638]
          Length = 388

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 222/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E  L++G        R  Q+ KW+Y     +F  M+DI++ +R+ L 
Sbjct: 21  KINLLDLNRQQMREFFLEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V+E+ S DGT KW +        G   +ETVYIPE+ R TLCVSSQVGC+
Sbjct: 77  DVAEIRAPEVVEEQRSADGTIKWAIAV------GDQRVETVYIPEEDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGT------RPITNVVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VP+N+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 241 PNDEIRDEIVPVNKKYNIETFLAAVRRYLAKSNANQGRVTIEYVMLDHVNDETDHAHQLA 300

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACG 360

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379


>gi|323526580|ref|YP_004228733.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1001]
 gi|323383582|gb|ADX55673.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1001]
          Length = 383

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/339 (42%), Positives = 206/339 (60%), Gaps = 6/339 (1%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    ++  P IV + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATLTMPGIVSDHVSADGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNLT  EI+ Q+ 
Sbjct: 88  ----VGNSNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLR 143

Query: 153 LAR-SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +A  +L                   R ++N+VMMGMGEPL N+D V  ++ +  D     
Sbjct: 144 MAEFALRASLGAAGGRATGGEGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYG 203

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+TLSTSG VP + R+G ++ V LA+SLHA S+ LR++LVP+N+KYPL  L+ AC+
Sbjct: 204 LSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLVPLNKKYPLRELMAACQ 263

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y  ++    ITFEY ML G+NDS   A  L+ + + +P K NLIPFNP+P    + S Q
Sbjct: 264 RYLKVAPRDFITFEYCMLDGVNDSEAQARELLALTRDVPCKFNLIPFNPFPESGLVRSKQ 323

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 324 EQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAVK 362


>gi|156932938|ref|YP_001436854.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
           sakazakii ATCC BAA-894]
 gi|205829756|sp|A7MGV3|RLMN_ENTS8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|156531192|gb|ABU76018.1| hypothetical protein ESA_00741 [Cronobacter sakazakii ATCC BAA-894]
          Length = 388

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 163/380 (42%), Positives = 220/380 (57%), Gaps = 23/380 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+ + E    +G        R  Q+ KW+Y     DF  M+DI++ +R  L
Sbjct: 20  EKINLLDLNRQAMREFFKTLG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVLRGKL 75

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC
Sbjct: 76  KEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VM
Sbjct: 130 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVM 179

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++++R+ +VPIN+KY +E  + A R Y G SNA   R+T EYVML  +ND    A  L
Sbjct: 240 APNDEIRDEIVPINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQL 299

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 300 AELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAC 359

Query: 363 GQLK-SLSKRIPKVPRQEMQ 381
           GQL   +  R  +  R+ MQ
Sbjct: 360 GQLAGDVIDRTKRTMRKRMQ 379


>gi|219872161|ref|YP_002476536.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           parasuis SH0165]
 gi|219692365|gb|ACL33588.1| predicted Fe-S-cluster redox enzyme [Haemophilus parasuis SH0165]
          Length = 386

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 157/363 (43%), Positives = 218/363 (60%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++ +R  L
Sbjct: 18  EKINLLNLNRQQMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMTNINKVLREKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+  E+ S DGT KW +        G  +IETVYIP+  R TLCVSSQVGC
Sbjct: 74  KRIAEIKAPEVAVEQRSADGTIKWAMWV------GDQQIETVYIPKDDRATLCVSSQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL+  EI+ QV  A  ++G+F G   I         R I+N+VM
Sbjct: 128 ALACTFCSTAQQGFNRNLSVSEIIGQVWRASKIIGNF-GVTGI---------RPITNVVM 177

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLSTSG VP + ++ E+I V LAISLH
Sbjct: 178 MGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLH 237

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LRN L+P+N+KY ++MLID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 238 APNDELRNELIPLNKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLSHVNDDVEHAHQL 297

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P+KINLIP+NP+P   Y  S    I  F + +   G++  +R  RG DI AAC
Sbjct: 298 ADVLKNTPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVTVRKTRGDDIDAAC 357

Query: 363 GQL 365
           GQL
Sbjct: 358 GQL 360


>gi|149926356|ref|ZP_01914617.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
 gi|149824719|gb|EDM83933.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
          Length = 379

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 148/333 (44%), Positives = 203/333 (60%), Gaps = 12/333 (3%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWI+  G+ +F  M+D+++  R  LN    I  P I+ + +S DGTRKWL   
Sbjct: 28  FRAKQLAKWIHQSGMDNFDSMTDLAKSFRQNLNSRACIKAPSIISDNVSKDGTRKWLFD- 86

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE+ RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 87  ----VGNGDAVETVFIPEERRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIVAQLW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A  LL +        G  + +  R ++N+VMMGMGEPL N+D +  +L +  D      
Sbjct: 143 KANVLLRE-------AGDRVYAQERPVTNVVMMGMGEPLLNYDALVPALQLMLDDTAYGL 195

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ ++  V LA+SLHA ++ LR+ LVP+N+KYPL  L+DAC  
Sbjct: 196 SRRRVTVSTSGVVPFMDRLSQDCPVALAVSLHAPNDALRDHLVPLNKKYPLRELLDACLR 255

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEYVML G+ND P  A  L++I K +P K NLIPFNP+P    L S   
Sbjct: 256 YLKFAPRDFITFEYVMLDGVNDKPEHAQQLLEIAKIVPCKFNLIPFNPFPESGLLKSTSP 315

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I TF + +  +G  + +R  RG DI AACGQL
Sbjct: 316 AIKTFVDILGGAGVVTTVRKTRGDDIDAACGQL 348


>gi|71908601|ref|YP_286188.1| hypothetical protein Daro_2988 [Dechloromonas aromatica RCB]
 gi|123760407|sp|Q47BR3|RLMN_DECAR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|71848222|gb|AAZ47718.1| 23S rRNA m(2)A-2503 methyltransferase [Dechloromonas aromatica RCB]
          Length = 364

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 147/333 (44%), Positives = 206/333 (61%), Gaps = 16/333 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G+ DF  M+DI++ +R  L     +  P +V +K+S DGTRK+L+  
Sbjct: 25  FRAKQVLRWIHRSGVADFDAMTDIAKSLREKLKAKAVVAPPAVVSDKLSDDGTRKFLID- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE  RGTLC+S+Q GC+L C+FC TG Q   RNL+  EI+ Q+ 
Sbjct: 84  ----VGNGNAVETVFIPEDDRGTLCISTQAGCALDCAFCSTGKQGFNRNLSVAEIIGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   LG   G E           R ISN+V+MGMGEPL NF+N   +L +  D      
Sbjct: 140 QANHALGAVHGDE-----------RVISNVVLMGMGEPLANFENSVAALKLMLDDNAYGL 188

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RRIT+STSG VP + R+G+E  V LA+SLHA ++ LR+ LVPIN+KYPL+ L+ AC+ 
Sbjct: 189 SRRRITVSTSGLVPVMDRLGDECPVALAVSLHAPNDKLRDQLVPINQKYPLKELMAACQR 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEY+ML GIND+   A  L+ ++K +  K NLIPFNP+PG  +  S  +
Sbjct: 249 YLEKAPRDFITFEYIMLDGINDTDAHARELLALVKSVHCKFNLIPFNPFPGSPFRRSPAE 308

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +  F++ + ++G  +  R  RG DI AACGQL
Sbjct: 309 RVRHFADILMQAGIVTTTRKTRGDDIDAACGQL 341


>gi|206560249|ref|YP_002231013.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
 gi|254807159|sp|B4EAX1|RLMN_BURCJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|198036290|emb|CAR52186.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
          Length = 379

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 147/342 (42%), Positives = 208/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    SI+ PEI  + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIVMPEIASDHVSTDGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R ++N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+KYPL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKYPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358


>gi|260598903|ref|YP_003211474.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
           turicensis z3032]
 gi|260218080|emb|CBA32831.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
           turicensis z3032]
          Length = 388

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 163/380 (42%), Positives = 220/380 (57%), Gaps = 23/380 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E    +G        R  Q+ KW+Y     DF  M+DI++ +R  L
Sbjct: 20  EKINLLDLNRQEMREFFKTLG----EKPFRADQVMKWMYHYCSDDFDEMTDINKVLRGKL 75

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC
Sbjct: 76  KEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VM
Sbjct: 130 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVM 179

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L
Sbjct: 240 APNDEIRDEIVPINKKYNIETFLAAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQL 299

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 300 AELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAC 359

Query: 363 GQLK-SLSKRIPKVPRQEMQ 381
           GQL   +  R  +  R+ MQ
Sbjct: 360 GQLAGDVIDRTKRTMRKRMQ 379


>gi|285808444|gb|ADC35970.1| conserved hypothetical protein [uncultured bacterium 98]
          Length = 358

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 155/351 (44%), Positives = 210/351 (59%), Gaps = 26/351 (7%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           ELE AL   G  + H R    QI++W+Y RG+ D Q M+D+S+ +R +L+  F+   P +
Sbjct: 14  ELEAALDARGFERFHAR----QIYRWVYKRGVTDLQRMTDLSRALRGVLDTDFTASSPRV 69

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
           V +++S DGTRK+LL      +     IE V+IP+    T C+S+QVGC++ C FC TG 
Sbjct: 70  VTDELSVDGTRKFLL-----ALADGKRIEAVFIPDTPAMTFCISTQVGCAMACGFCLTGK 124

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             LVRNLTA EI  QV     +L    G  D           +  NIV+MGMGEPL N+D
Sbjct: 125 MGLVRNLTAGEIAGQV----RVLAAATGLAD-----------QAFNIVLMGMGEPLHNYD 169

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNIL 254
           N  K+L +     GLS S RR+TLST G VP + R+  E +   LA+SLHA +++ R+ L
Sbjct: 170 NTMKALRMLHSEHGLSISPRRVTLSTVGIVPGLERLAREPLMPNLAVSLHATTDEQRSAL 229

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
           VP NRKYPL  +I AC+ +P L    RITFEYV+L G+NDSP DA  L+++L GI AK+N
Sbjct: 230 VPPNRKYPLADIIAACQRFP-LKQRSRITFEYVLLDGVNDSPEDARRLVRLLAGIRAKVN 288

Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LIP NP PG  +       +  F++ +     +  +R  RG DI AACGQL
Sbjct: 289 LIPLNPAPGIPFERPSDARVDRFAQILADRHLTVSVRKSRGQDIRAACGQL 339


>gi|26248881|ref|NP_754921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           CFT073]
 gi|227887552|ref|ZP_04005357.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
 gi|300981979|ref|ZP_07175825.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
 gi|301047150|ref|ZP_07194245.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
 gi|81475264|sp|Q8FF55|RLMN_ECOL6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|26109287|gb|AAN81489.1|AE016764_171 Hypothetical protein yfgB [Escherichia coli CFT073]
 gi|227835902|gb|EEJ46368.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
 gi|300300936|gb|EFJ57321.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
 gi|300408874|gb|EFJ92412.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
 gi|307554540|gb|ADN47315.1| radical SAM enzyme [Escherichia coli ABU 83972]
 gi|315292442|gb|EFU51794.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1]
          Length = 384

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 162/379 (42%), Positives = 221/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y G SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLGKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|226328008|ref|ZP_03803526.1| hypothetical protein PROPEN_01899 [Proteus penneri ATCC 35198]
 gi|225203712|gb|EEG86066.1| hypothetical protein PROPEN_01899 [Proteus penneri ATCC 35198]
          Length = 357

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 153/336 (45%), Positives = 203/336 (60%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI KW+Y     DF  M+DI++ +R+ L +   I  PE+ +E+ S DGT KW ++ 
Sbjct: 13  FRADQIMKWMYHYCYDDFDQMTDINKVLRNKLKEIAEIKAPEVSEEQRSTDGTIKWAIKV 72

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 73  ------GDQQVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 126

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A  ++G            +   GR+ I+N+VMMGMGEPL N +NV  +L I  D  G  
Sbjct: 127 RAAKIIGS-----------LKETGRRPITNVVMMGMGEPLLNLNNVIPALEIMMDDFGFG 175

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG VP + ++ + + V LAISLHA ++D+R+ +VPIN+KY + M ++  R
Sbjct: 176 LSKRRVTVSTSGVVPALDKLADAVDVALAISLHAPTDDIRDEIVPINKKYNIAMFLEGVR 235

Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA   R+T EYVML  INDS   A  L + LK  P KINLIP+NP+PG  Y  S
Sbjct: 236 RYIAKSNANQGRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKINLIPWNPFPGAPYGRS 295

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  FS+ +   G+++ +R  RG DI AACGQL
Sbjct: 296 SNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQL 331


>gi|329897039|ref|ZP_08271811.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
 gi|328921479|gb|EGG28865.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
          Length = 383

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 157/380 (41%), Positives = 220/380 (57%), Gaps = 22/380 (5%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ R ++E    + G        R  Q+ KWI+  G+ DF+ M+++S+ +R  L++ 
Sbjct: 15  NLLGLTRAQMEAFFAECG----EKSFRAQQVMKWIHHHGVCDFEAMTNLSKSLRAKLSER 70

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             +  PE+V    S DGTRKWL+R     I G + +E+V IP+  R TLCVSSQVGCSL 
Sbjct: 71  ACVRPPEVVSRHDSADGTRKWLVR----SIEGGL-VESVLIPDGDRATLCVSSQVGCSLD 125

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC TG Q   R+LTA +I+ QV LA      F           P   R ++N+VMMGM
Sbjct: 126 CSFCSTGKQGFERDLTASDIIGQVWLAIDSFDAFQ----------PGKDRVVTNVVMMGM 175

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NFD V  ++ +  D +    SKRR+TLSTSG VP + ++ E   V LA+SLHA +
Sbjct: 176 GEPLLNFDAVVSAMDLMMDDLAYGLSKRRVTLSTSGVVPALDKLAEVSCVSLAVSLHAPN 235

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKI 305
           + LRN LVPIN+KYP+  L+ + + Y    N R+  +T EY ++ G+ND P  A  L  +
Sbjct: 236 DALRNQLVPINKKYPIAELLASAQRYLDAQNDRKRVVTIEYTLIAGVNDQPEHARELAVL 295

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LK  P KINLIPFN +PG  Y       +  F + +  +G+   +RT RG DI AACGQL
Sbjct: 296 LKNFPCKINLIPFNAFPGSSYQRPSGNAVSRFWQVLIDAGFIVTVRTTRGDDISAACGQL 355

Query: 366 -KSLSKRIPKVPRQEMQITG 384
              +  R  +  R +  + G
Sbjct: 356 VGDVVDRTKRSQRHKAALEG 375


>gi|238027069|ref|YP_002911300.1| hypothetical protein bglu_1g14480 [Burkholderia glumae BGR1]
 gi|237876263|gb|ACR28596.1| Hypothetical protein bglu_1g14480 [Burkholderia glumae BGR1]
          Length = 378

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 149/342 (43%), Positives = 206/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L     I  PEI  + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGMPEIASDHVSSDGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIVGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R  LG  PG             R ++N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRESLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR++LVP+N+KYPL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDMLVPLNKKYPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML GIND+   A  L+ + + +P K NLIPFNP+P    L 
Sbjct: 257 ACQRYLAVAPRDFITFEYCMLDGINDTDAHARELLAVTRDVPCKFNLIPFNPFPESGLLR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  FS+ +  +G  + +R  RG DI AACGQL    K
Sbjct: 317 SKNERIKQFSQILIEAGVVTTVRKTRGDDIDAACGQLAGAVK 358


>gi|320539274|ref|ZP_08038944.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen
           [Serratia symbiotica str. Tucson]
 gi|320030666|gb|EFW12675.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen
           [Serratia symbiotica str. Tucson]
          Length = 399

 Score =  285 bits (730), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 157/364 (43%), Positives = 216/364 (59%), Gaps = 22/364 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M++I++ +R+ 
Sbjct: 30  VAKINLLDLNRQQMREFFSQMG----EKPFRADQVMKWMYHYCCDDFEQMTEINKVLRNK 85

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIP+  R TLCVSSQVG
Sbjct: 86  LQRVAEIRAPEVAEEQCSADGTIKWAIKV------GDQQVETVYIPDGDRATLCVSSQVG 139

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C FC T  Q   RNL   EI+ QV  A  ++G       I G       R I+N+V
Sbjct: 140 CALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALK----IAG------ERPITNVV 189

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISL
Sbjct: 190 MMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 249

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301
           HA ++ +RN +VPINR Y +E  + A R Y   SNA   R+T EYVML  INDS  DA  
Sbjct: 250 HAPNDKIRNEIVPINRNYNIESFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSTDDAHQ 309

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LK  P KINLIP+NP+P   Y  S    +  F++ +   G+++ +R  RG DI AA
Sbjct: 310 LANVLKNTPCKINLIPWNPFPAAPYGRSSNSRVDRFAKVLMEYGFTTIVRRTRGDDIDAA 369

Query: 362 CGQL 365
           CGQL
Sbjct: 370 CGQL 373


>gi|188533171|ref|YP_001906968.1| hypothetical protein ETA_10250 [Erwinia tasmaniensis Et1/99]
 gi|254807181|sp|B2VE98|RLMN_ERWT9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|188028213|emb|CAO96071.1| Conserved hypothetical protein YfgB [Erwinia tasmaniensis Et1/99]
          Length = 389

 Score =  285 bits (730), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 161/364 (44%), Positives = 217/364 (59%), Gaps = 24/364 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E    +G        R  Q+ KWIY     DF  M+DI++  R+ L
Sbjct: 21  EKINLLDLNRQQMREFFAGLG----EKPFRADQVMKWIYHYCCDDFDEMTDINKVFRNRL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ +E+ S DGT KW ++     +GG  ++ETVYIPEK R TLCVSSQVGC
Sbjct: 77  KELAEIRAPEVAEEQRSSDGTIKWAIQ-----VGGQ-QVETVYIPEKDRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIV 183
           +L C FC T  Q   RNL   EI+ QV  A  ++G               +G R I+N+V
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG-----------ATKVIGQRPITNVV 179

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISL
Sbjct: 180 MMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 239

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301
           HA ++ +R+ +VPIN+KY +E  + +   Y G SNA   R+T EYVML  INDS  +A  
Sbjct: 240 HAPNDTIRDEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHE 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AA
Sbjct: 300 LAALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAA 359

Query: 362 CGQL 365
           CGQL
Sbjct: 360 CGQL 363


>gi|167587047|ref|ZP_02379435.1| radical SAM enzyme, Cfr family protein [Burkholderia ubonensis Bu]
          Length = 379

 Score =  285 bits (730), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 210/342 (61%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    SI+ P+IV + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIVMPDIVSDHVSTDGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R ++N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR++LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDMLVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 317 SKPEQIKRFAQILIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358


>gi|319790295|ref|YP_004151928.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
 gi|317114797|gb|ADU97287.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
          Length = 345

 Score =  285 bits (730), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 154/356 (43%), Positives = 217/356 (60%), Gaps = 26/356 (7%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           EL+E +  +G        R  QI +W+Y + +  F  M+++S+E R LL++   I   ++
Sbjct: 11  ELKEFVTSLGFEP----YRAKQIAQWLYKKRVSSFDQMTNLSKEARKLLSEKAQIDLLKL 66

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
           V  + S DGTRK+L       +     IE+V+IPEK   TLCVS+QVGC   C FC T  
Sbjct: 67  VKVEESKDGTRKYLFE-----LEDGSRIESVFIPEKDWNTLCVSTQVGCPAGCRFCLTAK 121

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
               RNLTA EI+ Q +  +  +G+                R+ISN+V MGMGEPL NFD
Sbjct: 122 DGFTRNLTAGEIVDQYIQVQRDVGE---------------NRRISNVVFMGMGEPLLNFD 166

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNIL 254
           NVKK++ I +    L  S R++T+ST G VP I R+ +E+  V LA+SLHA ++++RN+L
Sbjct: 167 NVKKAVEIMTHRDMLDLSTRKVTVSTVGIVPGIDRMAKEMNKVKLAVSLHATTDEVRNML 226

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
           VP+NRKYP+  ++ A R YP   N RRI  EYVMLKG+NDS  DA  L+K++KGIP K+N
Sbjct: 227 VPLNRKYPIGEIMAALRRYPA-DNNRRIMIEYVMLKGVNDSLEDARRLVKLVKGIPVKVN 285

Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           LIPFNP+PG E+  + ++ I  F + +     ++ IR  RG DI AACG L++  K
Sbjct: 286 LIPFNPYPGAEFEPTPREQIEAFQKVLWDHNIAAFIRDSRGQDISAACGMLRTKEK 341


>gi|152979682|ref|YP_001345311.1| hypothetical protein Asuc_2030 [Actinobacillus succinogenes 130Z]
 gi|205829707|sp|A6VQX9|RLMN_ACTSZ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|150841405|gb|ABR75376.1| radical SAM enzyme, Cfr family [Actinobacillus succinogenes 130Z]
          Length = 371

 Score =  285 bits (730), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 155/363 (42%), Positives = 217/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 3   EKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 59  KQVAEIKAPEVAVEQRSSDGTIKWAMQV------GDQQVETVYIPEADRATLCVSSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F G   I         R I+N+VM
Sbjct: 113 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF-GVTGI---------RPITNVVM 162

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+T+STSG VP + ++ E I V LAISLH
Sbjct: 163 MGMGEPLLNMANVVPAMEIMLDDFAYGLSKRRVTISTSGVVPALDKLPEMIDVALAISLH 222

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 223 APNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVLLDHVNDGTEHAHQL 282

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 283 ADVLKNTPCKINLIPWNPFPEAPYAKSSNSRVDRFQKTLMEYGFTVTVRKTRGDDIDAAC 342

Query: 363 GQL 365
           GQL
Sbjct: 343 GQL 345


>gi|172060774|ref|YP_001808426.1| radical SAM protein [Burkholderia ambifaria MC40-6]
 gi|205829677|sp|B1YR46|RLMN_BURA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|171993291|gb|ACB64210.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MC40-6]
          Length = 379

 Score =  285 bits (730), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 209/342 (61%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    SI+ PEI  + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIVMPEIASDHVSADGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R ++N+VMMGMGEPL N++ V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYNAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358


>gi|257093692|ref|YP_003167333.1| radical SAM enzyme, Cfr family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046216|gb|ACV35404.1| radical SAM enzyme, Cfr family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 373

 Score =  285 bits (730), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 152/335 (45%), Positives = 202/335 (60%), Gaps = 15/335 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G  DF  M+DI++ +R  L     ++ P ++ +++S DGTRK+L   
Sbjct: 25  FRARQVLRWLHRFGQLDFDAMTDIARSLREKLRATAQVLPPVVIADRLSDDGTRKFLFD- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +GG   +E V+IPE  RGTLC+S+Q GC+L CSFC TG Q   RNLT  EI+ Q+ 
Sbjct: 84  ----VGGGNAVEAVFIPEAERGTLCISTQAGCALDCSFCSTGKQGFNRNLTVAEIVGQLW 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            AR  LG +   E   G       R ISN+V+MGMGEPL N DN   +L +  D      
Sbjct: 140 QARHSLGAYAAGETAGGE------RVISNVVLMGMGEPLANLDNTVTALRLMLDDNAYGL 193

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+  E  V LA+SLHA ++ LR+ LVPINRKYPL  L+ AC  
Sbjct: 194 SRRRVTVSTSGLVPAMDRLRNECPVALAVSLHAPNDRLRDELVPINRKYPLHELMSACLR 253

Query: 273 YPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           Y  L  A R  +TFEYVML G+NDS   A  L+ + + +P K NLIPFNP+PG  Y  S 
Sbjct: 254 Y--LEKAPRDFVTFEYVMLAGVNDSDAQAHELLALTRDVPCKFNLIPFNPFPGSPYHRSS 311

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              I  F+E +  +G  +  R  RG DI AACGQL
Sbjct: 312 APRIRQFAETLIDAGVVTTTRKTRGDDIDAACGQL 346


>gi|152971378|ref|YP_001336487.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238895973|ref|YP_002920709.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
           pneumoniae NTUH-K2044]
 gi|262040254|ref|ZP_06013505.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330007776|ref|ZP_08306073.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
 gi|205829779|sp|A6TCD6|RLMN_KLEP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|150956227|gb|ABR78257.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238548291|dbj|BAH64642.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259042363|gb|EEW43383.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535320|gb|EGF61805.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
          Length = 388

 Score =  285 bits (730), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 161/380 (42%), Positives = 221/380 (58%), Gaps = 25/380 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     DF  M+DI++ +R  L 
Sbjct: 21  KINLLDLNRQQMREFFKNMG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVLRSKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE+ R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSTDGTIKWAIAV------GDQRVETVYIPEEDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + + G R I+N+VM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG-----------AVKTTGVRPITNVVM 179

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 180 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VPIN+KY +E  +++ R Y   SNA   R+T EYVML  +ND    A  L
Sbjct: 240 APNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHEL 299

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 300 AALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 359

Query: 363 GQLK-SLSKRIPKVPRQEMQ 381
           GQL   +  R  +  R+ MQ
Sbjct: 360 GQLAGDVIDRTKRTLRKRMQ 379


>gi|257453867|ref|ZP_05619145.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60]
 gi|257448794|gb|EEV23759.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60]
          Length = 399

 Score =  285 bits (729), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 155/372 (41%), Positives = 221/372 (59%), Gaps = 25/372 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           +   K +L+GM + EL +    +G        R +Q+ KWIY  G+ DF  M+++S++++
Sbjct: 17  DLTAKTNLLGMSKAELGQFFADLG----EKPFRATQVMKWIYQFGVTDFYQMTNLSKKLQ 72

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTL 116
             L++  ++  P +  ++ S DGTRKW+       + G   +ETV IP        R TL
Sbjct: 73  ETLDEVATVSPPTVKFKQFSEDGTRKWVFE-----VAGGSLVETVLIPADDNKQFGRKTL 127

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           C+SSQVGC+L CSFC TG Q   R+L+  EI+ Q+ +A            +E + +    
Sbjct: 128 CISSQVGCALDCSFCSTGKQGFERDLSPSEIIGQLWVANQSY--------MENVPVTERE 179

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
            +++N+VMMGMGEPL N++ V  S+S+  D  G   SKRR+TLSTSG VP +  + ++I 
Sbjct: 180 NRVTNVVMMGMGEPLLNYEPVVASMSLMLDDFGFGLSKRRVTLSTSGIVPKMYELAKDID 239

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGIN 293
           V LAISLHA +++LRN LVPIN+KYPL+ LI A + Y    N R    +T EYVMLK +N
Sbjct: 240 VALAISLHAPNDELRNELVPINKKYPLKELIAAAKSYVYDENPRHKKHVTIEYVMLKDVN 299

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D+   A  L+ +LK +P KINLIPFNP+P   Y  S    I  FS  + ++G+   IR  
Sbjct: 300 DTDEHARQLVNLLKDLPCKINLIPFNPFPHAPYGRSSNNRIHAFSNILNQAGFVCTIRQT 359

Query: 354 RGLDILAACGQL 365
           RG DI AACGQL
Sbjct: 360 RGDDIDAACGQL 371


>gi|206580011|ref|YP_002237132.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342]
 gi|288934092|ref|YP_003438151.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22]
 gi|290508289|ref|ZP_06547660.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
 gi|254807185|sp|B5XNL2|RLMN_KLEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|206569069|gb|ACI10845.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342]
 gi|288888821|gb|ADC57139.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22]
 gi|289777683|gb|EFD85680.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
          Length = 388

 Score =  285 bits (729), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 161/380 (42%), Positives = 221/380 (58%), Gaps = 25/380 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     DF  M+DI++ +R  L 
Sbjct: 21  KINLLDLNRQQMREFFKNMG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVLRGKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE+ R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSTDGTIKWAIAV------GDQRVETVYIPEEDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + + G R I+N+VM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG-----------AVKTTGVRPITNVVM 179

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 180 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VPIN+KY +E  +++ R Y   SNA   R+T EYVML  +ND    A  L
Sbjct: 240 APNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHEL 299

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 300 AALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 359

Query: 363 GQLK-SLSKRIPKVPRQEMQ 381
           GQL   +  R  +  R+ MQ
Sbjct: 360 GQLAGDVIDRTKRTLRKRMQ 379


>gi|56461137|ref|YP_156418.1| ribosomal RNA large subunit methyltransferase N [Idiomarina
           loihiensis L2TR]
 gi|81363032|sp|Q5QYC0|RLMN_IDILO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|56180147|gb|AAV82869.1| Predicted Fe-S-cluster redox enzyme [Idiomarina loihiensis L2TR]
          Length = 378

 Score =  285 bits (729), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 166/385 (43%), Positives = 229/385 (59%), Gaps = 26/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + RE ++E   ++G        R  Q+ KW+Y   + DF  M+++++ +R  L
Sbjct: 7   KKVNLLDLNREGIKEFFREMG----EKPFRAEQVMKWLYHFCVDDFDEMTNLNKALREKL 62

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+ +++ S DGT    ++F      G  ++ETV+IPE  R TLCVSSQVGC
Sbjct: 63  KQVAEIRAPEVREQQQSSDGT----IKFAMTLFDGQ-DVETVWIPEGDRATLCVSSQVGC 117

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG Q   RNL+  EI+ QV     LLG + G   I         + ++N+VM
Sbjct: 118 ALECTFCSTGAQGFNRNLSVAEIIGQVWRVNQLLGAY-GKTGI---------KPVTNVVM 167

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ +  D +G   SKRR+TLSTSG VP + ++ E I VMLAISLH
Sbjct: 168 MGMGEPLLNLNNVVPAMELMLDDLGFGLSKRRVTLSTSGVVPALEKLRERIDVMLAISLH 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA-RRITFEYVMLKGINDSPRDALNLI 303
           A  ++LRN +VPIN+KY +E  + + R Y   S A R++T EYVML  +NDS   A  L 
Sbjct: 228 APDDELRNEIVPINKKYNIEEFLASSRRYVEQSKAQRKVTVEYVMLDHVNDSTDQAHALA 287

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K LK  P+KINLIPFNP+PG +Y  S    I  F++ +   G +  +R  RG DI AACG
Sbjct: 288 KTLKDTPSKINLIPFNPFPGSDYGRSSNSRIDRFAKVLMEYGLTVMVRKTRGDDIDAACG 347

Query: 364 QLK----SLSKRIPKVPRQEMQITG 384
           QL       +KRI K  RQ+ Q  G
Sbjct: 348 QLVGDVIDRTKRILK--RQQKQRGG 370


>gi|115351803|ref|YP_773642.1| radical SAM protein [Burkholderia ambifaria AMMD]
 gi|122323090|sp|Q0BEW5|RLMN_BURCM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|115281791|gb|ABI87308.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia ambifaria AMMD]
          Length = 379

 Score =  285 bits (729), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 209/342 (61%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    SI+ PEI  + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIVMPEIASDHVSTDGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R ++N+VMMGMGEPL N++ V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYNAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358


>gi|237732496|ref|ZP_04562977.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
 gi|226908035|gb|EEH93953.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
          Length = 388

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 162/380 (42%), Positives = 222/380 (58%), Gaps = 25/380 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     +F  M+DI++ +R+ L 
Sbjct: 21  KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + + G R I+N+VM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG-----------AVKATGVRPITNVVM 179

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 240 APNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDGTEHAHQL 299

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 300 AELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAC 359

Query: 363 GQLK-SLSKRIPKVPRQEMQ 381
           GQL   +  R  +  R+ MQ
Sbjct: 360 GQLAGDVIDRTKRTLRKRMQ 379


>gi|21672555|ref|NP_660622.1| hypothetical protein BUsg275 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091617|sp|Q8K9P5|RLMN_BUCAP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|21623181|gb|AAM67833.1| hypothetical 43.1 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 363

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 156/362 (43%), Positives = 217/362 (59%), Gaps = 24/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+E+E  LL +G      +  T Q+ KWIY R   +F  MS++ +++R  LN
Sbjct: 14  KINLLDLNRKEIEIFLLSLGAK----KFVTDQLMKWIYNRHCNNFNLMSNLKKDIRKKLN 69

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I     ++EKIS DGT KW+     +      +IET+YIPEK R TLCVSSQ+GCS
Sbjct: 70  ERSYIFASNFIEEKISYDGTVKWITSIDKQ------KIETIYIPEKKRATLCVSSQIGCS 123

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC TG Q   RNL   EI+ Q+  A  +L +                  I+NIV M
Sbjct: 124 LKCKFCATGQQGFNRNLKVSEIISQIWQANKILKE------------KKNNSTITNIVFM 171

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRRITLSTSG VP + ++ ++I V LAISLHA
Sbjct: 172 GMGEPLLNLNNVISAIKIILDKNGFGLSKRRITLSTSGIVPALNKLIKKIDVSLAISLHA 231

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303
            ++ +RN ++PIN KY ++  +++   Y   S+A R  +T EYVML+GIND    A  L 
Sbjct: 232 PNDFIRNSIMPINMKYNIKSFLNSVSKYLKHSHANRGGVTVEYVMLRGINDLNEHAEELG 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ILK IP+KINLIP+N +    ++CS +  I  F+  +++ G+++ IR  RG DI AACG
Sbjct: 292 NILKKIPSKINLIPWNFFKNANFICSSKNRINIFANILRKKGFNTTIRKNRGQDIGAACG 351

Query: 364 QL 365
           QL
Sbjct: 352 QL 353


>gi|317490866|ref|ZP_07949302.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920413|gb|EFV41736.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 419

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/366 (43%), Positives = 216/366 (59%), Gaps = 22/366 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N  +K +L+ + R+++ E   K+G        R  Q+ KW+Y     +F  M+DI++ +R
Sbjct: 48  NTSEKINLLDLDRQQMREFFAKLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 103

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           + L +   I  PE+ +E+ S DGT KW ++       G   +ETVYIPE  R TLCVSSQ
Sbjct: 104 NKLKEIAEIRAPEVAEEQRSTDGTIKWAIQV------GDQRVETVYIPEDDRATLCVSSQ 157

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N
Sbjct: 158 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AHKVTGQ------RPITN 207

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N +NV  +++I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 208 VVMMGMGEPLLNLNNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALEKLGDMIDVALAI 267

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA ++++R+ +VPINRKY +E  + A R Y   SNA   R+T EYVML  IND    A
Sbjct: 268 SLHAPTDEIRDEIVPINRKYNIETFLGAVRRYLEKSNANQGRVTVEYVMLDHINDGMEHA 327

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G++  +R  RG DI 
Sbjct: 328 HQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTVIVRKTRGDDID 387

Query: 360 AACGQL 365
           AACGQL
Sbjct: 388 AACGQL 393


>gi|51245787|ref|YP_065671.1| hypothetical protein DP1935 [Desulfotalea psychrophila LSv54]
 gi|81641926|sp|Q6ALW1|RLMN_DESPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|50876824|emb|CAG36664.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 362

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 160/365 (43%), Positives = 221/365 (60%), Gaps = 21/365 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  L  + +++L E   K+G P      R  QI  W+Y   +RDF+ M+D+++  R LL
Sbjct: 10  EKIDLKNLSQDQLVEFAEKLGQPA----FRGRQIMSWLYRPEVRDFEQMTDLAKVFRKLL 65

Query: 65  --NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
             N  FS     I++        +   ++F  R   G V IETV IPE  R TLC+SSQV
Sbjct: 66  AENSFFSHFDDPIIER------AKDGCVKFGFRLHDGHV-IETVLIPEPDRNTLCISSQV 118

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C+FC TG     RNLT  EI+ QV  AR  L + P     + ++ P    +++N+
Sbjct: 119 GCAMKCTFCMTGGMGFTRNLTPSEIVNQVCAARDFLANEPA----DKLIGPD---RVTNV 171

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N +NV  S+SI ++  GL  + RRIT+ST G V N+AR+G+E  V LAIS
Sbjct: 172 VYMGMGEPLNNLENVLTSISILTEQKGLDLTGRRITVSTCGIVANMARLGQEAPVNLAIS 231

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHAV +  R++L+P+N +YPL+ L++ACR YP +   RRI FEY+ML GINDS  +A  L
Sbjct: 232 LHAVDDKTRDMLMPVNNRYPLDELLEACRTYP-MGKRRRIMFEYIMLAGINDSDTEARTL 290

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + L+ IP KINLIP+N  PG  Y     K I++F   ++ + YS  IR  RG DI AAC
Sbjct: 291 ARKLQEIPCKINLIPYNESPGLPYKSPGMKRILSFQNILREANYSVFIRNSRGEDIAAAC 350

Query: 363 GQLKS 367
           GQL +
Sbjct: 351 GQLAT 355


>gi|107029007|ref|YP_626102.1| hypothetical protein Bcen_6265 [Burkholderia cenocepacia AU 1054]
 gi|116689835|ref|YP_835458.1| radical SAM protein [Burkholderia cenocepacia HI2424]
 gi|170733174|ref|YP_001765121.1| radical SAM protein [Burkholderia cenocepacia MC0-3]
 gi|123179922|sp|Q1BGX6|RLMN_BURCA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829678|sp|B1JT94|RLMN_BURCC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829679|sp|A0K7T8|RLMN_BURCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|105898171|gb|ABF81129.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia cenocepacia AU
           1054]
 gi|116647924|gb|ABK08565.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia cenocepacia
           HI2424]
 gi|169816416|gb|ACA90999.1| radical SAM enzyme, Cfr family [Burkholderia cenocepacia MC0-3]
          Length = 379

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 208/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    SI+ P+I  + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIVMPDIASDHVSTDGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R ++N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+KYPL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKYPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358


>gi|145631818|ref|ZP_01787577.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae
           R3021]
 gi|144982537|gb|EDJ90091.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae
           R3021]
          Length = 383

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPINRKY ++MLID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINRKYNIQMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353

Query: 363 GQL 365
           GQL
Sbjct: 354 GQL 356


>gi|170703874|ref|ZP_02894562.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria IOP40-10]
 gi|171321348|ref|ZP_02910305.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MEX-5]
 gi|170131219|gb|EDS99858.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria IOP40-10]
 gi|171093366|gb|EDT38556.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MEX-5]
          Length = 379

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 208/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    SI+ PEI  + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIVMPEIASDHVSTDGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R ++N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358


>gi|17545931|ref|NP_519333.1| hypothetical protein RSc1212 [Ralstonia solanacearum GMI1000]
 gi|81505540|sp|Q8Y032|RLMN_RALSO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|17428226|emb|CAD14914.1| conserved hypothetical protein 48 [Ralstonia solanacearum GMI1000]
          Length = 383

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/337 (43%), Positives = 207/337 (61%), Gaps = 20/337 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G  DF  M+D+++ +R  L    +I  P ++ + +S DGTRKWL+  
Sbjct: 27  FRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRATIQAPAVISDHLSSDGTRKWLVD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 86  ----VGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLW 141

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R  LG  P  +           R I+N+VMMGMGEPL N+D V  ++ +  D  
Sbjct: 142 MAEFAMRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPAMRLMLDDN 190

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+ +++ V LA+SLHA ++ LR++LVP+N+KYPL  L+ 
Sbjct: 191 AYGLSRRRVTLSTSGVVPMMDRLSQDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMA 250

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           ACR Y   +    ITFEY ML G+NDS   A  L++++  +P K NLIPFNP+P      
Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVVADVPCKFNLIPFNPFPESGLKR 310

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S+ + I  FS+ +  +G  + IR  RG DI AACGQL
Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347


>gi|299067263|emb|CBJ38460.1| conserved protein of unknown function, predicted radical SAM enzyme
           [Ralstonia solanacearum CMR15]
          Length = 383

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/337 (43%), Positives = 206/337 (61%), Gaps = 20/337 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G  DF  M+D+++ +R  L    +I  P ++ + +S DGTRKWL+  
Sbjct: 27  FRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRATIQAPAVISDNLSSDGTRKWLVD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 86  ----VGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLW 141

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R  LG  P  +           R I+N+VMMGMGEPL N+D V  ++ +  D  
Sbjct: 142 MAEFAMRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPAMRLMLDDN 190

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+  ++ V LA+SLHA ++ LR++LVP+N+KYPL  L+ 
Sbjct: 191 AYGLSRRRVTLSTSGVVPMMDRLSHDLPVALAVSLHASNDALRDVLVPLNKKYPLAELVA 250

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           ACR Y   +    ITFEY ML G+NDS   A  L++++  +P K NLIPFNP+P      
Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVVADVPCKFNLIPFNPFPESGLKR 310

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S+ + I  FS+ +  +G  + IR  RG DI AACGQL
Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347


>gi|300717954|ref|YP_003742757.1| Fe-S containing enzyme [Erwinia billingiae Eb661]
 gi|299063790|emb|CAX60910.1| putative Fe-S containing enzyme [Erwinia billingiae Eb661]
          Length = 389

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 222/379 (58%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E    +G        R  Q+ KW+Y     DF  M+DI++  R+ L
Sbjct: 21  EKINLLDLNRQQMREFFASMG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVFRNRL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+  E+ S DGT KW +      +GG  ++ETVYIPEK R TLCVSSQVGC
Sbjct: 77  KEVAEIRAPEVATEQRSTDGTIKWAI-----TVGGQ-QVETVYIPEKDRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G       I G       R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----ASKITGT------RPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VP+N+KY +E  + +   Y   SNA   R+T EYVML  +NDS  +A  L
Sbjct: 241 APNDTIRDEIVPVNKKYNIETFLASVSRYIAKSNANQGRVTIEYVMLDHVNDSTDNAHEL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 301 AALLKNTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360

Query: 363 GQLK-SLSKRIPKVPRQEM 380
           GQL   +  R  +  R++M
Sbjct: 361 GQLAGEVIDRTKRTLRKKM 379


>gi|303252097|ref|ZP_07338266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248296|ref|ZP_07530322.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649079|gb|EFL79266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855230|gb|EFM87407.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 393

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 157/363 (43%), Positives = 218/363 (60%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKINLMNLTRKEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++       G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KQIAEIKAPEVSVEQRSSDGTIKWAMQV------GDQQIETVYIPEDDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP +  + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ ++PIN+KY +EML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 245 APNDELRDEIMPINKKYNIEMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364

Query: 363 GQL 365
           GQL
Sbjct: 365 GQL 367


>gi|251788745|ref|YP_003003466.1| ribosomal RNA large subunit methyltransferase N [Dickeya zeae
           Ech1591]
 gi|247537366|gb|ACT05987.1| radical SAM enzyme, Cfr family [Dickeya zeae Ech1591]
          Length = 392

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 162/383 (42%), Positives = 220/383 (57%), Gaps = 23/383 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N  +K +L+   R+++     ++G        R  Q+ KWIY     DF  M+DI++ +R
Sbjct: 21  NSNEKINLLDFNRQQMRAFFAELG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVLR 76

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L     I  PE+VDE+ S DGT KW +    +       +ETVYIPE+ R TLCVSSQ
Sbjct: 77  GKLQAIAEIRAPEVVDEQRSSDGTIKWAILVDGQ------RVETVYIPEEDRATLCVSSQ 130

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N
Sbjct: 131 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITN 180

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 181 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA ++++RN ++PIN+KY +E  + A R Y   SNA   R+T EYVML  IND    A
Sbjct: 241 SLHAPTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHA 300

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI 
Sbjct: 301 HQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDID 360

Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381
           AACGQL   +  R  +  +++MQ
Sbjct: 361 AACGQLAGEVVDRTKRTLKKKMQ 383


>gi|283832102|ref|ZP_06351843.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
 gi|291071728|gb|EFE09837.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
          Length = 388

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 161/380 (42%), Positives = 222/380 (58%), Gaps = 25/380 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     +F  M+DI++ +R+ L 
Sbjct: 21  KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           L C FC T  Q   RNL   EI+ QV  A  ++G            + + G R I+N+VM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG-----------AVKATGVRPITNVVM 179

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L
Sbjct: 240 APNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQL 299

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 300 AELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMGYGFTTIVRKTRGDDIDAAC 359

Query: 363 GQLK-SLSKRIPKVPRQEMQ 381
           GQL   +  R  +  R+ MQ
Sbjct: 360 GQLAGDVIDRTKRTLRKRMQ 379


>gi|296104196|ref|YP_003614342.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058655|gb|ADF63393.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 388

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     +F  M+DI++ +R+ L 
Sbjct: 21  KINLLDLNRQQMREFFKELG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGT------RPITNVVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 301 ALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 360

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379


>gi|170718501|ref|YP_001783713.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus
           2336]
 gi|205829771|sp|B0UWR0|RLMN_HAES2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829859|sp|Q0I3U8|RLMN_HAES1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|168826630|gb|ACA32001.1| radical SAM enzyme, Cfr family [Haemophilus somnus 2336]
          Length = 372

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 157/362 (43%), Positives = 216/362 (59%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++     ++G        R  Q+ KWIY  G  +F  M++I++++R  L 
Sbjct: 4   KINLMNLTRQQMRAFFQELG----EKPFRADQLVKWIYHFGEDNFDHMTNINKKLREKLK 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PEI  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 60  TVAEIKAPEIAVEQRSADGTIKWAMQV------GDQQVETVYIPETDRATLCVSSQVGCA 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VMM
Sbjct: 114 LACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVMM 163

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP + ++ E I V LAISLHA
Sbjct: 164 GMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHA 223

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            +++LRN +VPIN+KY ++ML+++   Y  +SNA   ++T EYVML  IND    A  L 
Sbjct: 224 PNDELRNEIVPINKKYNIKMLMESVNRYLNVSNANHGKVTIEYVMLDHINDGTEHAHQLA 283

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+P   Y  S    I  F + +   G++  +R  RG DI AACG
Sbjct: 284 EVLKNTPCKINLIPWNPFPDAPYAKSSNTRIDRFQKTLMEYGFTVILRKTRGDDIDAACG 343

Query: 364 QL 365
           QL
Sbjct: 344 QL 345


>gi|145589473|ref|YP_001156070.1| radical SAM protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|205829801|sp|A4SYE2|RLMN_POLSQ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145047879|gb|ABP34506.1| 23S rRNA m(2)A-2503 methyltransferase [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 402

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/337 (43%), Positives = 205/337 (60%), Gaps = 9/337 (2%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+ RG+ D   MSD+++  R  L     ++   ++ ++ + DGTRKWLL  
Sbjct: 28  FRAKQLMQWIHQRGVSDINDMSDLAKSFRATLLDKVEVLSLPVIKDEHATDGTRKWLLD- 86

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +E+V+IPE  RGTLC+SSQ GC++ C FC TG Q   RNLT+ EI+ Q+ 
Sbjct: 87  ----VGAGNAVESVFIPEDDRGTLCISSQAGCAVNCRFCSTGRQGFSRNLTSGEIIGQLW 142

Query: 153 LARSLLGDFP-GCEDIEGMVIPS---VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            A  LL + P     IE    P     GR ISN+VMMGMGEPL N+DNV  +L +  D  
Sbjct: 143 FAEHLLRNDPEAIRRIEKYPTPGWEHTGRVISNVVMMGMGEPLLNYDNVVSALRLMLDDR 202

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+T+STSG VP I R+ ++  V LA+SLHA ++ LR+ LVP+N+KYPL  L+D
Sbjct: 203 AYGLSRRRVTVSTSGVVPMIDRLAQDCPVALAVSLHAPNDALRDQLVPLNQKYPLRELLD 262

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC  Y   +    +TFEY ML G+NDS   A  L+++L+ I  KINLIPFNP+P      
Sbjct: 263 ACERYLPFAPRDFLTFEYCMLDGVNDSDIQAKELVRLLRNIKCKINLIPFNPFPESGLKR 322

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S  + +  F+  +  +G  + +R  RG DI AACGQL
Sbjct: 323 SSAQRVNAFAGILLDAGMVATVRKTRGDDIAAACGQL 359


>gi|333000705|gb|EGK20281.1| hypothetical protein SFVA6_3397 [Shigella flexneri VA-6]
 gi|333002312|gb|EGK21876.1| hypothetical protein SFK272_3309 [Shigella flexneri K-272]
 gi|333016135|gb|EGK35467.1| hypothetical protein SFK227_3146 [Shigella flexneri K-227]
          Length = 384

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|68248968|ref|YP_248080.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           influenzae 86-028NP]
 gi|81336620|sp|Q4QNH7|RLMN_HAEI8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|68057167|gb|AAX87420.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae
           86-028NP]
          Length = 390

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 157/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 21  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 77  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 301 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 360

Query: 363 GQL 365
           GQL
Sbjct: 361 GQL 363


>gi|300691809|ref|YP_003752804.1| hypothetical protein RPSI07_2165 [Ralstonia solanacearum PSI07]
 gi|299078869|emb|CBJ51530.1| conserved protein of unknown function, predicted radical SAM enzyme
           [Ralstonia solanacearum PSI07]
          Length = 383

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/337 (43%), Positives = 206/337 (61%), Gaps = 20/337 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G  DF  M+D+++ +R  L    +I  P ++ + +S DGTRKWL+  
Sbjct: 27  FRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRATIQAPAVISDHLSSDGTRKWLVD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 86  ----VGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLW 141

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R  LG  P  +           R I+N+VMMGMGEPL N+D V  ++ +  D  
Sbjct: 142 MAEFAVRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPAMRLMLDDN 190

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+  ++ V LA+SLHA ++ LR++LVP+N+KYPL  L+ 
Sbjct: 191 AYGLSRRRVTLSTSGVVPMMDRLSRDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMA 250

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           ACR Y   +    ITFEY ML G+NDS   A  L++++  +P K NLIPFNP+P      
Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVIADVPCKFNLIPFNPFPESGLKR 310

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S+ + I  FS+ +  +G  + IR  RG DI AACGQL
Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347


>gi|83747944|ref|ZP_00944975.1| Radical SAM family enzyme [Ralstonia solanacearum UW551]
 gi|207743447|ref|YP_002259839.1| hypothetical protein 48 [Ralstonia solanacearum IPO1609]
 gi|83725362|gb|EAP72509.1| Radical SAM family enzyme [Ralstonia solanacearum UW551]
 gi|206594844|emb|CAQ61771.1| conserved hypothetical protein 48 [Ralstonia solanacearum IPO1609]
          Length = 383

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 147/337 (43%), Positives = 206/337 (61%), Gaps = 20/337 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G  DF  M+D+++ +R  L    +I  P ++ + +S DGTRKWL+  
Sbjct: 27  FRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRATIQAPAVISDHLSSDGTRKWLVD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 86  ----VGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLW 141

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R  LG  P  +           R I+N+VMMGMGEPL N+D V  ++ +  D  
Sbjct: 142 MAEFAMRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPAMRLMLDDN 190

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+  ++ V LA+SLHA ++ LR++LVP+N+KYPL  L+ 
Sbjct: 191 AYGLSRRRVTLSTSGVVPMMDRLSRDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMA 250

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           ACR Y   +    ITFEY ML G+NDS   A  L++++  +P K NLIPFNP+P      
Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVIADVPCKFNLIPFNPFPESGLKR 310

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S+ + I  FS+ +  +G  + IR  RG DI AACGQL
Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347


>gi|300704417|ref|YP_003746020.1| hypothetical protein RCFBP_20221 [Ralstonia solanacearum CFBP2957]
 gi|299072081|emb|CBJ43413.1| conserved protein of unknown function, predicted radical SAM enzyme
           [Ralstonia solanacearum CFBP2957]
          Length = 383

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 147/337 (43%), Positives = 206/337 (61%), Gaps = 20/337 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G  DF  M+D+++ +R  L    +I  P ++ + +S DGTRKWL+  
Sbjct: 27  FRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRATIQAPAVISDHLSSDGTRKWLVD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 86  ----VGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLW 141

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R  LG  P  +           R I+N+VMMGMGEPL N+D V  ++ +  D  
Sbjct: 142 MAEFAMRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPAMRLMLDDN 190

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+  ++ V LA+SLHA ++ LR++LVP+N+KYPL  L+ 
Sbjct: 191 AYGLSRRRVTLSTSGVVPMMDRLSHDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMA 250

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           ACR Y   +    ITFEY ML G+NDS   A  L++++  +P K NLIPFNP+P      
Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVVADVPCKFNLIPFNPFPESGLKR 310

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S+ + I  FS+ +  +G  + IR  RG DI AACGQL
Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347


>gi|260869206|ref|YP_003235608.1| putative enzyme [Escherichia coli O111:H- str. 11128]
 gi|257765562|dbj|BAI37057.1| predicted enzyme [Escherichia coli O111:H- str. 11128]
 gi|323177359|gb|EFZ62947.1| hypothetical protein ECOK1180_3845 [Escherichia coli 1180]
          Length = 384

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRDKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|221198083|ref|ZP_03571129.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2M]
 gi|221204358|ref|ZP_03577375.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2]
 gi|221212767|ref|ZP_03585743.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD1]
 gi|221166980|gb|EED99450.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD1]
 gi|221175215|gb|EEE07645.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2]
 gi|221182015|gb|EEE14416.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2M]
          Length = 378

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 209/342 (61%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    SI  P+IV + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASITMPDIVSDHVSADGTRKWLVD- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R ++N+VMMGMGEPL N++ V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYNAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 317 SKPEQIKRFAQILIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358


>gi|238921042|ref|YP_002934557.1| ribosomal RNA large subunit methyltransferase N [Edwardsiella
           ictaluri 93-146]
 gi|259491987|sp|C5BET4|RLMN_EDWI9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|238870611|gb|ACR70322.1| radical SAM enzyme, Cfr family [Edwardsiella ictaluri 93-146]
          Length = 390

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 161/363 (44%), Positives = 212/363 (58%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R ++ E  +++G        R  QI KWIY     DF  M+DI++ +R  L
Sbjct: 22  EKINLLDLDRRQMREFFVQMG----EKPFRADQIMKWIYHYCCDDFDAMTDINKVLRARL 77

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW L+       G   +ETVYIPE  R TLCVSSQVGC
Sbjct: 78  KQVAEIRAPEVAVEQRSSDGTIKWALQV------GDQRVETVYIPEDDRATLCVSSQVGC 131

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G     + + G       R I+N+VM
Sbjct: 132 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AQKVTG------NRPITNVVM 181

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 182 MGMGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDTIDVALAISLH 241

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VPINRKY ++M + + R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 242 APNDTIRDEIVPINRKYNIDMFLGSVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 301

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  +  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 302 AECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 361

Query: 363 GQL 365
           GQL
Sbjct: 362 GQL 364


>gi|88703674|ref|ZP_01101390.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
 gi|88702388|gb|EAQ99491.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
          Length = 381

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 153/364 (42%), Positives = 214/364 (58%), Gaps = 21/364 (5%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K +L GM R +LE   L++G      R R  Q+ KW++ +G  DF  MS++ + +R  
Sbjct: 11  VEKVNLFGMSRTQLEAFFLEMG----EKRFRAQQLMKWMHHQGECDFSAMSNLGKALRER 66

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+    +  P +  +  S DGTRKWL+      + G   +ETV IP+ +R TLCVSSQVG
Sbjct: 67  LSAIAEVRPPVVESQHDSSDGTRKWLVH-----VDGGGLVETVLIPDGNRATLCVSSQVG 121

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL CSFC TG Q   R+L+A EI+ QV LA      F              GR ++N+V
Sbjct: 122 CSLDCSFCSTGKQGFQRDLSAAEIIGQVWLAIKSYDAFQSGN----------GRVVTNVV 171

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV  ++++  D +G   SKRR+TLSTSG VP + ++ E     LA+SL
Sbjct: 172 MMGMGEPLLNFDNVVTAMNLMMDDLGYGISKRRVTLSTSGVVPALDKLAEVSEASLAVSL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301
           HA +++LRN LVP+NR+YP+  L+ + + Y      ++  +T EY ++ GIND P  A  
Sbjct: 232 HAPNDELRNQLVPVNRRYPIAQLLASAQRYIDAQKDKKRVVTIEYTLMAGINDQPEQARE 291

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +L   P KINLIPFNP+P   Y       +  F + +  +G+   +RT RG DI AA
Sbjct: 292 LALLLADFPCKINLIPFNPFPNSGYERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAA 351

Query: 362 CGQL 365
           CGQL
Sbjct: 352 CGQL 355


>gi|330817169|ref|YP_004360874.1| hypothetical protein bgla_1g22910 [Burkholderia gladioli BSR3]
 gi|327369562|gb|AEA60918.1| hypothetical protein bgla_1g22910 [Burkholderia gladioli BSR3]
          Length = 378

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/342 (43%), Positives = 205/342 (59%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L     I  PEI  + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAMIGMPEIASDHVSSDGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIVGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R  LG  PG             R ++N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRESLGRAPGPNG-------KADRVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+KYPL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKYPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    L 
Sbjct: 257 ACQRYLTVAPRDFITFEYCMLDGVNDTDAHARELLAVTRDVPCKFNLIPFNPFPESGLLR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  FS+ +  +G  + +R  RG DI AACGQL    K
Sbjct: 317 SKNERIKQFSQILIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358


>gi|307250523|ref|ZP_07532468.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307257327|ref|ZP_07539097.1| hypothetical protein appser10_13250 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306857465|gb|EFM89576.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306864177|gb|EFM96090.1| hypothetical protein appser10_13250 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 393

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 157/363 (43%), Positives = 218/363 (60%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKINLMNLTRQEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++       G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KQIAEIKAPEVSVEQRSSDGTIKWAMQV------GDQQIETVYIPEDDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F     I G+      R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GITGV------RPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP +  + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ ++PIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364

Query: 363 GQL 365
           GQL
Sbjct: 365 GQL 367


>gi|329123609|ref|ZP_08252169.1| cfr family radical SAM enzyme [Haemophilus aegyptius ATCC 11116]
 gi|327469808|gb|EGF15273.1| cfr family radical SAM enzyme [Haemophilus aegyptius ATCC 11116]
          Length = 390

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 157/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 21  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 77  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 301 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 360

Query: 363 GQL 365
           GQL
Sbjct: 361 GQL 363


>gi|319775768|ref|YP_004138256.1| Fe-S-cluster redox enzyme [Haemophilus influenzae F3047]
 gi|317450359|emb|CBY86575.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae F3047]
          Length = 383

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 157/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353

Query: 363 GQL 365
           GQL
Sbjct: 354 GQL 356


>gi|319896694|ref|YP_004134887.1| fe-s-cluster redox enzyme [Haemophilus influenzae F3031]
 gi|317432196|emb|CBY80548.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae F3031]
          Length = 383

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 157/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353

Query: 363 GQL 365
           GQL
Sbjct: 354 GQL 356


>gi|78066584|ref|YP_369353.1| hypothetical protein Bcep18194_A5115 [Burkholderia sp. 383]
 gi|123770007|sp|Q39FQ7|RLMN_BURS3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|77967329|gb|ABB08709.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia sp. 383]
          Length = 379

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 147/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    SI  PEI  + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIGMPEIASDHVSTDGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R ++N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+KYPL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDPLRDELVPLNKKYPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358


>gi|145640315|ref|ZP_01795899.1| hypothetical protein CGSHiR3021_09660 [Haemophilus influenzae
           R3021]
 gi|145274901|gb|EDK14763.1| hypothetical protein CGSHiR3021_09660 [Haemophilus influenzae
           22.4-21]
          Length = 383

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 157/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++MLID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIQMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353

Query: 363 GQL 365
           GQL
Sbjct: 354 GQL 356


>gi|145628721|ref|ZP_01784521.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae
           22.1-21]
 gi|144979191|gb|EDJ88877.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae
           22.1-21]
          Length = 383

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 157/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKQLG----EKPFRADQLVKWIYHFGEDNFDKMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353

Query: 363 GQL 365
           GQL
Sbjct: 354 GQL 356


>gi|283786133|ref|YP_003365998.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
 gi|282949587|emb|CBG89205.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
          Length = 388

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 221/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     +F  M+DI++ +R+ L 
Sbjct: 21  KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDEMTDINKVLRNKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 360

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379


>gi|332639897|pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli
 gi|332639898|pdb|3RF9|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli
          Length = 404

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|194432102|ref|ZP_03064391.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
 gi|194419631|gb|EDX35711.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
 gi|332089738|gb|EGI94839.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
          Length = 384

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYERSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|52425971|ref|YP_089108.1| hypothetical protein MS1916 [Mannheimia succiniciproducens MBEL55E]
 gi|81386653|sp|Q65R87|RLMN_MANSM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|52308023|gb|AAU38523.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 371

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 158/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 3   EKINLMNLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLRDKL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PEI  E+ S DGT KW ++       G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 59  KAVAEIKAPEIAVEQRSADGTIKWAMQV------GDQQIETVYIPEADRATLCVSSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F G   I         R I+N+VM
Sbjct: 113 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKVIGEF-GVTGI---------RPITNVVM 162

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ +  D      SKRR+TLSTSG VP +  +   I V LAISLH
Sbjct: 163 MGMGEPLLNVANVVPAMELMLDDFAYGLSKRRVTLSTSGVVPALDNLSGMIDVALAISLH 222

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++MLID+   Y  +SNA   ++T EYVML  +NDS   A  L
Sbjct: 223 APNDELRDEIVPINKKYNIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDSIEHAHQL 282

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 283 AEVLKNTPCKINLIPWNPFPQAPYGKSSNTRVDKFQKTLMEYGFTVIVRKTRGDDIDAAC 342

Query: 363 GQL 365
           GQL
Sbjct: 343 GQL 345


>gi|307729247|ref|YP_003906471.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1003]
 gi|307583782|gb|ADN57180.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1003]
          Length = 383

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 146/339 (43%), Positives = 205/339 (60%), Gaps = 6/339 (1%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    +I  P IV + IS DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATISMPGIVSDHISADGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNLT  EI+ Q+ 
Sbjct: 88  ----VGNSNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLR 143

Query: 153 LAR-SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +A  +L                   R ++N+VMMGMGEPL N+D V  ++ +  D     
Sbjct: 144 MAEFALRASLGAAGGRATGGEGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYG 203

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+TLSTSG VP + R+G ++ V LA+SLHA S+ LR++LVP+N+KYPL  L+ AC+
Sbjct: 204 LSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLVPLNKKYPLRELMAACQ 263

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y  ++    ITFEY ML G+NDS   A  L+ + + +P K NLIPFNP+P    + S  
Sbjct: 264 RYLKVAPRDFITFEYCMLDGVNDSEAQARELLALTRDVPCKFNLIPFNPFPESGLVRSRP 323

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 324 EQIKRFAQVLVDAGVVTTVRKTRGDDIDAACGQLAGAVK 362


>gi|300920672|ref|ZP_07137083.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
 gi|300412353|gb|EFJ95663.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
          Length = 384

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDDTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|332305581|ref|YP_004433432.1| radical SAM enzyme, Cfr family [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172910|gb|AEE22164.1| radical SAM enzyme, Cfr family [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 380

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 156/362 (43%), Positives = 208/362 (57%), Gaps = 21/362 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+   R  L E    IG        R  Q+ KWIY  G+ DF  M+++++ +R  L 
Sbjct: 11  KINLLNFNRAGLREYFSSIG----EKPFRADQVMKWIYQAGVSDFDQMTNLNKALREKLK 66

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PEI  ++ + DGT K+ LR       G  E+ETV+IP+  R TLCVSSQVGC+
Sbjct: 67  MQCEVKAPEIAYQQGATDGTIKFALRLE-----GGQEVETVWIPDADRATLCVSSQVGCA 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T  Q   RNL+  EI+ QV    + +G          +   S  R I+N+VMM
Sbjct: 122 LECTFCSTAQQGFNRNLSVAEIIGQVWRVATTIG----------LSNDSAKRPITNVVMM 171

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ +  D +    SKRR+TLSTSG VP +  +G++I V LAISLHA
Sbjct: 172 GMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHA 231

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
             + LR+ +VPIN+KYP++  +   R Y   SNA   ++T EYVML GINDS   A  L 
Sbjct: 232 PDDTLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L   P+KINLIPFNP+PG  Y  S    I  F++ +   G    +R  RG DI AACG
Sbjct: 292 KVLADTPSKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACG 351

Query: 364 QL 365
           QL
Sbjct: 352 QL 353


>gi|170694776|ref|ZP_02885927.1| radical SAM enzyme, Cfr family [Burkholderia graminis C4D1M]
 gi|170140407|gb|EDT08584.1| radical SAM enzyme, Cfr family [Burkholderia graminis C4D1M]
          Length = 383

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/339 (42%), Positives = 204/339 (60%), Gaps = 6/339 (1%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    +I  P IV + IS DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATISMPGIVSDHISTDGTRKWLIE- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNLT  EI+ Q+ 
Sbjct: 88  ----VGNSNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLR 143

Query: 153 LAR-SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +A  +L                   R ++N+VMMGM EPL N+D V  ++ +  D     
Sbjct: 144 MAEFALRASLGAAGGRAVGGEGKGERVVTNVVMMGMAEPLLNYDAVVPAMRLMLDDNAYG 203

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+TLSTSG VP + R+G ++ V LA+SLHA S+ LR++LVP+N+KYPL  L+ AC+
Sbjct: 204 LSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLVPLNKKYPLRELMAACQ 263

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y  ++    ITFEY ML G+NDS   A  L+ + + +P K NLIPFNP+P    + S  
Sbjct: 264 RYLKVAPRDFITFEYCMLDGVNDSEAQARELLALTRDVPCKFNLIPFNPFPESGLVRSKS 323

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 324 EQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAVK 362


>gi|325526956|gb|EGD04412.1| radical SAM superfamily protein [Burkholderia sp. TJI49]
          Length = 379

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    +I  PEI  + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRATISMPEIASDHVSADGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R ++N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+KYPL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKYPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 317 SKPEQIKRFAQILIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358


>gi|170767629|ref|ZP_02902082.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
 gi|170123963|gb|EDS92894.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
          Length = 384

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|32035054|ref|ZP_00135120.1| COG0820: Predicted Fe-S-cluster redox enzyme [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208740|ref|YP_001053965.1| hypothetical protein APL_1274 [Actinobacillus pleuropneumoniae L20]
 gi|205829705|sp|A3N1S4|RLMN_ACTP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|126097532|gb|ABN74360.1| hypothetical protein APL_1274 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 393

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 157/363 (43%), Positives = 218/363 (60%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKINLMNLTRKEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++       G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KQIAEIKAPEVSVEQRSSDGTIKWAMQV------GDQQIETVYIPEDDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F     I G+      R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GITGV------RPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP +  + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ ++PIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364

Query: 363 GQL 365
           GQL
Sbjct: 365 GQL 367


>gi|165976692|ref|YP_001652285.1| hypothetical protein APJL_1285 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|303250645|ref|ZP_07336842.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252906|ref|ZP_07534795.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307261750|ref|ZP_07543416.1| hypothetical protein appser12_13090 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263937|ref|ZP_07545541.1| hypothetical protein appser13_13460 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|205829706|sp|B0BQK6|RLMN_ACTPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|165876793|gb|ABY69841.1| hypothetical protein APJL_1285 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|302650633|gb|EFL80792.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859695|gb|EFM91719.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306868568|gb|EFN00379.1| hypothetical protein appser12_13090 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870802|gb|EFN02542.1| hypothetical protein appser13_13460 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 393

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 156/363 (42%), Positives = 218/363 (60%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKINLMNLTRQEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++       G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KQIAEIKAPEVSVEQRSSDGTIKWAMQV------GDQQIETVYIPEDDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP +  + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ ++PIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364

Query: 363 GQL 365
           GQL
Sbjct: 365 GQL 367


>gi|32491320|ref|NP_871574.1| hypothetical protein WGLp571 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|81741588|sp|Q8D1Y5|RLMN_WIGBR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|25166527|dbj|BAC24717.1| yfgB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 382

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 156/363 (42%), Positives = 218/363 (60%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +++G  REEL +  +KIG      + R  QI KWIY R   D   M+D S+ +++ L
Sbjct: 24  KKINILGKTREELYDFFIKIG----EEKFRAEQIMKWIYKRYCDDVSLMTDFSKNLKNKL 79

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I + +I  E IS DGT KW+L+   +       IETVYIPE +R TLC+SSQ+GC
Sbjct: 80  KNIIKIDHLDIESENISQDGTIKWVLKINDQ------NIETVYIPEINRATLCISSQIGC 133

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL + EI+ Q+  A  ++ D    +           +KI+NIVM
Sbjct: 134 ALNCKFCATSYQGFNRNLNSYEIISQIWYAMKIINDRNNFK----------LKKITNIVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  N+  ++ I  D+ G   SKRRIT+ST+G  P I ++G+ I V LAISLH
Sbjct: 184 MGMGEPLLNLKNLVPAIKIILDNYGFGLSKRRITISTAGISPVIKKLGKLIDVKLAISLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +RN ++PIN+KY ++ ++ + + Y   S A   +I+ EY+ML  IND    A  L
Sbjct: 244 APNDIIRNKIMPINKKYNIKSILLSAKKYISTSKANKGKISIEYIMLNEINDKTEHAYQL 303

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           I  LK IP KINLIP+NP+P  +Y CS+   I  F + + + G ++ IR  RG+DI AAC
Sbjct: 304 INCLKNIPCKINLIPWNPFPYVKYKCSNFNKINNFYKILIKHGITTTIRKQRGIDIKAAC 363

Query: 363 GQL 365
           GQL
Sbjct: 364 GQL 366


>gi|16130442|ref|NP_417012.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia
           coli str. K-12 substr. MG1655]
 gi|74313043|ref|YP_311462.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
           Ss046]
 gi|82544966|ref|YP_408913.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
           Sb227]
 gi|82777902|ref|YP_404251.1| hypothetical protein SDY_2713 [Shigella dysenteriae Sd197]
 gi|89109323|ref|AP_003103.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
 gi|91211843|ref|YP_541829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           UTI89]
 gi|110642682|ref|YP_670412.1| hypothetical protein ECP_2522 [Escherichia coli 536]
 gi|117624746|ref|YP_853659.1| hypothetical protein APECO1_4007 [Escherichia coli APEC O1]
 gi|157157838|ref|YP_001463839.1| hypothetical protein EcE24377A_2801 [Escherichia coli E24377A]
 gi|170019200|ref|YP_001724154.1| hypothetical protein EcolC_1160 [Escherichia coli ATCC 8739]
 gi|170082127|ref|YP_001731447.1| hypothetical protein ECDH10B_2683 [Escherichia coli str. K-12
           substr. DH10B]
 gi|170683806|ref|YP_001744705.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           SMS-3-5]
 gi|187731368|ref|YP_001881308.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
           CDC 3083-94]
 gi|188491812|ref|ZP_02999082.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
 gi|191167679|ref|ZP_03029488.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
 gi|191172618|ref|ZP_03034157.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
 gi|193064109|ref|ZP_03045194.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
 gi|194427328|ref|ZP_03059878.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
 gi|194437563|ref|ZP_03069659.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
 gi|209919994|ref|YP_002294078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           SE11]
 gi|215487867|ref|YP_002330298.1| hypothetical protein E2348C_2800 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218555042|ref|YP_002387955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           IAI1]
 gi|218559443|ref|YP_002392356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           S88]
 gi|218690637|ref|YP_002398849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           ED1a]
 gi|218696144|ref|YP_002403811.1| hypothetical protein EC55989_2802 [Escherichia coli 55989]
 gi|218701027|ref|YP_002408656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           IAI39]
 gi|237705027|ref|ZP_04535508.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
           3_2_53FAA]
 gi|238901682|ref|YP_002927478.1| putative enzyme [Escherichia coli BW2952]
 gi|253772589|ref|YP_003035420.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162491|ref|YP_003045599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli B
           str. REL606]
 gi|256017335|ref|ZP_05431200.1| hypothetical protein ShiD9_00370 [Shigella sp. D9]
 gi|256021797|ref|ZP_05435662.1| hypothetical protein E4_00375 [Escherichia sp. 4_1_40B]
 gi|260845147|ref|YP_003222925.1| putative enzyme [Escherichia coli O103:H2 str. 12009]
 gi|260856611|ref|YP_003230502.1| putative enzyme [Escherichia coli O26:H11 str. 11368]
 gi|293410931|ref|ZP_06654507.1| cfr family radical SAM enzyme [Escherichia coli B354]
 gi|293446870|ref|ZP_06663292.1| cfr family radical SAM enzyme [Escherichia coli B088]
 gi|300817713|ref|ZP_07097928.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
 gi|300820813|ref|ZP_07100963.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
 gi|300904309|ref|ZP_07122166.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
 gi|300927120|ref|ZP_07142868.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
 gi|300930157|ref|ZP_07145578.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
 gi|300940232|ref|ZP_07154830.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
 gi|300951778|ref|ZP_07165593.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
 gi|300958853|ref|ZP_07170961.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
 gi|300998073|ref|ZP_07181933.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
 gi|301022377|ref|ZP_07186264.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
 gi|301024749|ref|ZP_07188389.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
 gi|301302874|ref|ZP_07209002.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
 gi|301330392|ref|ZP_07223034.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
 gi|301648272|ref|ZP_07248015.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
 gi|306814413|ref|ZP_07448575.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           NC101]
 gi|307139152|ref|ZP_07498508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           H736]
 gi|307312488|ref|ZP_07592121.1| radical SAM enzyme, Cfr family [Escherichia coli W]
 gi|309784732|ref|ZP_07679365.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
 gi|309794436|ref|ZP_07688859.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
 gi|312965433|ref|ZP_07779665.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
 gi|331643137|ref|ZP_08344272.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
 gi|331648214|ref|ZP_08349304.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
 gi|331653945|ref|ZP_08354946.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
 gi|331658662|ref|ZP_08359606.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
 gi|331664080|ref|ZP_08364990.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
 gi|331669263|ref|ZP_08370111.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
 gi|331673972|ref|ZP_08374735.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
 gi|331678508|ref|ZP_08379183.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
 gi|331684165|ref|ZP_08384761.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
 gi|332278330|ref|ZP_08390743.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
 gi|549552|sp|P36979|RLMN_ECOLI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123084401|sp|Q1R8L6|RLMN_ECOUT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123147826|sp|Q0TEW8|RLMN_ECOL5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123728531|sp|Q32D45|RLMN_SHIDS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123755559|sp|Q31XX3|RLMN_SHIBS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123773477|sp|Q3YZ35|RLMN_SHISS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829749|sp|A7ZPW0|RLMN_ECO24 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829750|sp|B1XAZ2|RLMN_ECODH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829752|sp|A1AE55|RLMN_ECOK1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829753|sp|B1IWE4|RLMN_ECOLC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829754|sp|B1LNH2|RLMN_ECOSM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829888|sp|B2TXU2|RLMN_SHIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807172|sp|B7UGW3|RLMN_ECO27 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807173|sp|B7MI02|RLMN_ECO45 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807174|sp|B7LDA9|RLMN_ECO55 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807176|sp|B7NRG7|RLMN_ECO7I RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807177|sp|B7N304|RLMN_ECO81 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807178|sp|B7M7M1|RLMN_ECO8A RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807180|sp|B6I589|RLMN_ECOSE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|259491986|sp|C4ZX92|RLMN_ECOBW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|493519|gb|AAA21359.1| unknown [Escherichia coli]
 gi|1788865|gb|AAC75570.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia
           coli str. K-12 substr. MG1655]
 gi|1799916|dbj|BAA16404.1| hypothetical protein [Escherichia coli str. K12 substr. W3110]
 gi|73856520|gb|AAZ89227.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81242050|gb|ABB62760.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|81246377|gb|ABB67085.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|91073417|gb|ABE08298.1| hypothetical protein UTI89_C2838 [Escherichia coli UTI89]
 gi|110344274|gb|ABG70511.1| hypothetical protein YfgB (putative Fe-S-cluster redox enzyme)
           [Escherichia coli 536]
 gi|115513870|gb|ABJ01945.1| putative Fe-S-cluster redox enzyme [Escherichia coli APEC O1]
 gi|157079868|gb|ABV19576.1| radical SAM enzyme, Cfr family [Escherichia coli E24377A]
 gi|169754128|gb|ACA76827.1| radical SAM enzyme, Cfr family [Escherichia coli ATCC 8739]
 gi|169889962|gb|ACB03669.1| predicted enzyme [Escherichia coli str. K-12 substr. DH10B]
 gi|170521524|gb|ACB19702.1| radical SAM enzyme, Cfr family [Escherichia coli SMS-3-5]
 gi|187428360|gb|ACD07634.1| radical SAM enzyme, Cfr family [Shigella boydii CDC 3083-94]
 gi|188487011|gb|EDU62114.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
 gi|190902278|gb|EDV62018.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
 gi|190907091|gb|EDV66691.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
 gi|192929344|gb|EDV82953.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
 gi|194414649|gb|EDX30921.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
 gi|194423369|gb|EDX39360.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
 gi|209913253|dbj|BAG78327.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|215265939|emb|CAS10348.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69]
 gi|218352876|emb|CAU98675.1| putative Fe-S containing enzyme [Escherichia coli 55989]
 gi|218361810|emb|CAQ99409.1| putative Fe-S containing enzyme [Escherichia coli IAI1]
 gi|218366212|emb|CAR03960.1| putative Fe-S containing enzyme [Escherichia coli S88]
 gi|218371013|emb|CAR18841.1| putative Fe-S containing enzyme [Escherichia coli IAI39]
 gi|218428201|emb|CAV17847.1| putative Fe-S containing enzyme [Escherichia coli ED1a]
 gi|222034228|emb|CAP76969.1| UPF0063 protein yfgB [Escherichia coli LF82]
 gi|226901393|gb|EEH87652.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
           3_2_53FAA]
 gi|238862352|gb|ACR64350.1| predicted enzyme [Escherichia coli BW2952]
 gi|242378115|emb|CAQ32888.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253323633|gb|ACT28235.1| radical SAM enzyme, Cfr family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974392|gb|ACT40063.1| predicted enzyme [Escherichia coli B str. REL606]
 gi|253978559|gb|ACT44229.1| predicted enzyme [Escherichia coli BL21(DE3)]
 gi|257755260|dbj|BAI26762.1| predicted enzyme [Escherichia coli O26:H11 str. 11368]
 gi|257760294|dbj|BAI31791.1| predicted enzyme [Escherichia coli O103:H2 str. 12009]
 gi|260448403|gb|ACX38825.1| radical SAM enzyme, Cfr family [Escherichia coli DH1]
 gi|281179571|dbj|BAI55901.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|284922467|emb|CBG35554.1| radical SAM superfamily protein [Escherichia coli 042]
 gi|291323700|gb|EFE63128.1| cfr family radical SAM enzyme [Escherichia coli B088]
 gi|291471399|gb|EFF13883.1| cfr family radical SAM enzyme [Escherichia coli B354]
 gi|294492482|gb|ADE91238.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli IHE3034]
 gi|299881276|gb|EFI89487.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
 gi|300304052|gb|EFJ58572.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
 gi|300314505|gb|EFJ64289.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
 gi|300396418|gb|EFJ79956.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
 gi|300403741|gb|EFJ87279.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
 gi|300416890|gb|EFK00201.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
 gi|300448975|gb|EFK12595.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
 gi|300454928|gb|EFK18421.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
 gi|300461963|gb|EFK25456.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
 gi|300526566|gb|EFK47635.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
 gi|300529701|gb|EFK50763.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
 gi|300841809|gb|EFK69569.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
 gi|300843621|gb|EFK71381.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
 gi|301073659|gb|EFK88465.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
 gi|305851807|gb|EFM52259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           NC101]
 gi|306907411|gb|EFN37915.1| radical SAM enzyme, Cfr family [Escherichia coli W]
 gi|307625927|gb|ADN70231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           UM146]
 gi|308121892|gb|EFO59154.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
 gi|308927102|gb|EFP72576.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
 gi|309702849|emb|CBJ02180.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
 gi|312289853|gb|EFR17741.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
 gi|312947094|gb|ADR27921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315061836|gb|ADT76163.1| radical SAM protein [Escherichia coli W]
 gi|315137141|dbj|BAJ44300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           DH1]
 gi|315256537|gb|EFU36505.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1]
 gi|315288069|gb|EFU47469.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3]
 gi|315300476|gb|EFU59705.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3]
 gi|315615776|gb|EFU96408.1| UPF0063 protein yfgB [Escherichia coli 3431]
 gi|320175080|gb|EFW50193.1| Ribosomal RNA large subunit methyltransferase N [Shigella
           dysenteriae CDC 74-1112]
 gi|320180507|gb|EFW55438.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii
           ATCC 9905]
 gi|320185217|gb|EFW59997.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri
           CDC 796-83]
 gi|320196354|gb|EFW70978.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
           WV_060327]
 gi|320200081|gb|EFW74670.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
           EC4100B]
 gi|323156172|gb|EFZ42331.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14]
 gi|323159387|gb|EFZ45372.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010]
 gi|323169039|gb|EFZ54716.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G]
 gi|323170210|gb|EFZ55863.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68]
 gi|323184422|gb|EFZ69797.1| hypothetical protein ECOK1357_2143 [Escherichia coli 1357]
 gi|323188365|gb|EFZ73657.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1]
 gi|323377583|gb|ADX49851.1| radical SAM enzyme, Cfr family [Escherichia coli KO11]
 gi|323936410|gb|EGB32700.1| cfr family protein radical SAM enzyme [Escherichia coli E1520]
 gi|323941221|gb|EGB37406.1| cfr family protein radical SAM enzyme [Escherichia coli E482]
 gi|323944739|gb|EGB40806.1| cfr family protein radical SAM enzyme [Escherichia coli H120]
 gi|323949177|gb|EGB45068.1| cfr family protein radical SAM enzyme [Escherichia coli H252]
 gi|323955758|gb|EGB51516.1| cfr family protein radical SAM enzyme [Escherichia coli H263]
 gi|323961333|gb|EGB56945.1| cfr family protein radical SAM enzyme [Escherichia coli H489]
 gi|323967965|gb|EGB63377.1| cfr family protein radical SAM enzyme [Escherichia coli M863]
 gi|323971070|gb|EGB66318.1| cfr family protein radical SAM enzyme [Escherichia coli TA007]
 gi|323977300|gb|EGB72386.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509]
 gi|324008525|gb|EGB77744.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2]
 gi|324011226|gb|EGB80445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1]
 gi|324020077|gb|EGB89296.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3]
 gi|324118139|gb|EGC12036.1| cfr family protein radical SAM enzyme [Escherichia coli E1167]
 gi|327252224|gb|EGE63896.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v]
 gi|330912292|gb|EGH40802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           AA86]
 gi|331039935|gb|EGI12155.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
 gi|331043074|gb|EGI15214.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
 gi|331048794|gb|EGI20870.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
 gi|331054327|gb|EGI26354.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
 gi|331059879|gb|EGI31856.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
 gi|331064457|gb|EGI36368.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
 gi|331069245|gb|EGI40637.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
 gi|331074968|gb|EGI46288.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
 gi|331079117|gb|EGI50319.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
 gi|332092803|gb|EGI97872.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74]
 gi|332100682|gb|EGJ04028.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
 gi|332344389|gb|AEE57723.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 384

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|218548046|ref|YP_002381837.1| ribosomal RNA large subunit methyltransferase N [Escherichia
           fergusonii ATCC 35469]
 gi|254807182|sp|B7LKC1|RLMN_ESCF3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|218355587|emb|CAQ88198.1| putative Fe-S containing enzyme [Escherichia fergusonii ATCC 35469]
 gi|324113011|gb|EGC06987.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253]
 gi|325496450|gb|EGC94309.1| ribosomal RNA large subunit methyltransferase N [Escherichia
           fergusonii ECD227]
          Length = 384

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|307132063|ref|YP_003884079.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
 gi|306529592|gb|ADM99522.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
          Length = 392

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 161/383 (42%), Positives = 220/383 (57%), Gaps = 23/383 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N  +K +L+   R+++     ++G        R  Q+ KW+Y     DF  M+DI++ +R
Sbjct: 21  NSNEKINLLDFNRQQMRAFFAELG----EKPFRADQVMKWMYHYCCDDFNQMTDINKVLR 76

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L     I  PE+VDE+ S DGT KW +    +       +ETVYIPE+ R TLCVSSQ
Sbjct: 77  GKLQAIAEIRAPEVVDEQRSSDGTIKWAILVDGQ------RVETVYIPEEDRATLCVSSQ 130

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N
Sbjct: 131 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITN 180

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 181 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA ++++RN ++PIN+KY +E  + A R Y   SNA   R+T EYVML  IND    A
Sbjct: 241 SLHAPTDEIRNEIMPINKKYDIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHA 300

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI 
Sbjct: 301 HQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDID 360

Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381
           AACGQL   +  R  +  +++MQ
Sbjct: 361 AACGQLAGEVVDRTKRTLKKKMQ 383


>gi|303257588|ref|ZP_07343600.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
 gi|302859558|gb|EFL82637.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
          Length = 384

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 151/335 (45%), Positives = 206/335 (61%), Gaps = 16/335 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+ RG RDF  M+D+++  R  L +   I  PEI+ +K + DGTRKWLL  
Sbjct: 27  FRAKQLERWIHRRGARDFSEMTDLAKSFRAKLEKVAEIRGPEIIRDKTAADGTRKWLLD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +E VYIP+  RGTLCVSSQ GC++ C FC TG Q   RNL A EI+ Q+ 
Sbjct: 86  ----VGSGNAVEMVYIPQDGRGTLCVSSQAGCAMNCLFCSTGKQGFNRNLKASEIIGQLR 141

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   L    G  D          R ISN+VMMGMGEPL N D V  SL +  D      
Sbjct: 142 HAEHTLRKDLGITD-------ENERVISNVVMMGMGEPLQNLDAVIPSLKLMLDDNAYGL 194

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG V  + ++ E+  V LA+SLHA +N+LR+ ++P+NRK+PLE L+ AC+ 
Sbjct: 195 SRRRVTVSTSGLVRQMDKLAEQCPVALAVSLHAPNNELRDKIMPVNRKHPLEQLLAACKR 254

Query: 273 YPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           Y  L +A R  ITFEY+++ G+NDS   A  LI +++ IP K NLIPFNP+PG     S 
Sbjct: 255 Y--LEHAPRDFITFEYILIGGVNDSLAQAKELITLVQDIPCKFNLIPFNPFPGSGLERSK 312

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +++  F++ +  +G  + +R  RG DI AACGQL
Sbjct: 313 PEEVKAFADRLNGAGIVTTVRKVRGDDIDAACGQL 347


>gi|312796090|ref|YP_004029012.1| radical SAM protein [Burkholderia rhizoxinica HKI 454]
 gi|312167865|emb|CBW74868.1| Radical SAM family enzyme [Burkholderia rhizoxinica HKI 454]
          Length = 391

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 149/333 (44%), Positives = 201/333 (60%), Gaps = 12/333 (3%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G+ DF  M+D+++ +R  L    SI +P ++ +  S DGTRKWLL  
Sbjct: 41  FRARQLQRWIHHGGVSDFDAMTDLAKSLRDKLKTRASIRHPAVLQDHTSADGTRKWLLD- 99

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE+ RGTLCVSSQ GC++ C FC TG Q   RNL   EI+ Q+ 
Sbjct: 100 ----VGEGNAVETVYIPEQGRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLGVGEIIGQLW 155

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   L          G + P   R I+N+VMMGMGEPL NFD V  ++ +  D      
Sbjct: 156 MAEFAL------RAARGGLAPGE-RVITNVVMMGMGEPLLNFDAVVPAMRLMLDDHAYGL 208

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+TLSTSG VP I R+  E+ V LA+SLHA ++ LR+ LVP+NRKYPL  L+ AC  
Sbjct: 209 SRRRVTLSTSGVVPMIDRLAAELPVALAVSLHAPNDALRDELVPLNRKYPLAELMAACNR 268

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y  ++    ITFEY ML G+ND    A  L+ + + +P K NLIPFNP+P    L S  +
Sbjct: 269 YLRVAPRDFITFEYCMLDGVNDRDEHARQLLALTRDVPCKFNLIPFNPFPESGLLRSHPE 328

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F++ +  +G  + +R  RG DI AACGQL
Sbjct: 329 RIKQFAQILIDAGVVTTVRRTRGDDIDAACGQL 361


>gi|301169067|emb|CBW28664.1| predicted enzyme [Haemophilus influenzae 10810]
          Length = 383

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 157/363 (43%), Positives = 215/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     I G+      R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GITGV------RPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++L   P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 294 AEVLNNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353

Query: 363 GQL 365
           GQL
Sbjct: 354 GQL 356


>gi|241662752|ref|YP_002981112.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12D]
 gi|240864779|gb|ACS62440.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12D]
          Length = 383

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 146/337 (43%), Positives = 207/337 (61%), Gaps = 20/337 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G  DF  M+D+++ +R  L    +I  P ++ + +S DGTRKWL+  
Sbjct: 27  FRAKQLQRWIHQSGASDFGEMTDLAKSLREKLATRANIQAPAVITDHLSSDGTRKWLVD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 86  ----VGQGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLW 141

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R  LG  P  +           R I+N+VMMGMGEPL N+D V  +L++  D  
Sbjct: 142 MAEFAMRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPALALMLDDN 190

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+T+STSG VP + R+  ++ V LA+SLHA ++ LR++LVP+N+KYPL  L+ 
Sbjct: 191 AYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHASNDALRDVLVPLNKKYPLAELMA 250

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           ACR Y   +    ITFEY ML G+ND+   A  L++++  +P K NLIPFNP+P      
Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVVADVPCKFNLIPFNPFPESGLKR 310

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S+ + I  FS+ +  +G  + IR  RG DI AACGQL
Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347


>gi|113461341|ref|YP_719410.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus
           129PT]
 gi|112823384|gb|ABI25473.1| 23S rRNA m(2)A-2503 methyltransferase [Haemophilus somnus 129PT]
          Length = 365

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 153/335 (45%), Positives = 204/335 (60%), Gaps = 18/335 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G  +F  M++I++++R  L     I  PEI  E+ S DGT KW ++ 
Sbjct: 20  FRADQLVKWIYHFGEDNFDHMTNINKKLREKLKTVAEIKAPEIAVEQRSADGTIKWAMQV 79

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C+FC T  Q   RNLT  EI+ QV 
Sbjct: 80  ------GDQQVETVYIPETDRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVW 133

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A  ++G+F     + G+      R I+N+VMMGMGEPL N  NV  ++ I  D      
Sbjct: 134 RASKIIGNF----GVTGV------RPITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGL 183

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           SKRR+TLSTSG VP + ++ E I V LAISLHA +++LRN +VPIN+KY ++ML+++   
Sbjct: 184 SKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDELRNEIVPINKKYNIKMLMESVNR 243

Query: 273 YPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           Y  +SNA   ++T EYVML  IND    A  L ++LK  P KINLIP+NP+P   Y  S 
Sbjct: 244 YLNVSNANHGKVTIEYVMLDHINDGTEHAHQLAEVLKNTPCKINLIPWNPFPDAPYAKSS 303

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              I  F + +   G++  +R  RG DI AACGQL
Sbjct: 304 NTRIDRFQKTLMEYGFTVILRKTRGDDIDAACGQL 338


>gi|330999629|ref|ZP_08323338.1| 23S rRNA m2A2503 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|329574135|gb|EGG55711.1| 23S rRNA m2A2503 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 389

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 151/335 (45%), Positives = 206/335 (61%), Gaps = 16/335 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+ RG RDF  M+D+++  R  L +   I  PEI+ +K + DGTRKWLL  
Sbjct: 32  FRAKQLERWIHRRGARDFSEMTDLAKSFRAKLEKVAEIRGPEIIRDKTAADGTRKWLLD- 90

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +E VYIP+  RGTLCVSSQ GC++ C FC TG Q   RNL A EI+ Q+ 
Sbjct: 91  ----VGSGNAVEMVYIPQDGRGTLCVSSQAGCAMNCLFCSTGKQGFNRNLKASEIIGQLR 146

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   L    G  D          R ISN+VMMGMGEPL N D V  SL +  D      
Sbjct: 147 HAEHTLRKDLGITD-------ENERVISNVVMMGMGEPLQNLDAVIPSLKLMLDDNAYGL 199

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG V  + ++ E+  V LA+SLHA +N+LR+ ++P+NRK+PLE L+ AC+ 
Sbjct: 200 SRRRVTVSTSGLVRQMDKLAEQCPVALAVSLHAPNNELRDKIMPVNRKHPLEQLLAACKR 259

Query: 273 YPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           Y  L +A R  ITFEY+++ G+NDS   A  LI +++ IP K NLIPFNP+PG     S 
Sbjct: 260 Y--LEHAPRDFITFEYILIGGVNDSLAQAKELITLVQDIPCKFNLIPFNPFPGSGLERSK 317

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +++  F++ +  +G  + +R  RG DI AACGQL
Sbjct: 318 PEEVKAFADRLNGAGIVTTVRKVRGDDIDAACGQL 352


>gi|307246190|ref|ZP_07528272.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255171|ref|ZP_07536989.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259608|ref|ZP_07541333.1| hypothetical protein appser11_14070 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853125|gb|EFM85348.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862044|gb|EFM94020.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866544|gb|EFM98407.1| hypothetical protein appser11_14070 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 393

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 156/363 (42%), Positives = 218/363 (60%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKINLMNLTRKEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++       G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KQIAEIKAPEVSVEQRSSDGTIKWAMQV------GDQQIETVYIPEDDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP +  + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ ++PIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364

Query: 363 GQL 365
           GQL
Sbjct: 365 GQL 367


>gi|109899434|ref|YP_662689.1| hypothetical protein Patl_3129 [Pseudoalteromonas atlantica T6c]
 gi|109701715|gb|ABG41635.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudoalteromonas atlantica
           T6c]
          Length = 380

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 156/362 (43%), Positives = 208/362 (57%), Gaps = 21/362 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+   R  L E    IG        R  Q+ KWIY  G+ DF  M+++++ +R  L 
Sbjct: 11  KINLLNFNRAGLREYFSSIG----EKPFRADQMMKWIYQAGVSDFDQMTNLNKALREKLK 66

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PEI  ++ + DGT K+ LR       G  E+ETV+IP++ R TLCVSSQVGC+
Sbjct: 67  AQCEVKAPEIAYQQGASDGTIKFALRLE-----GGQEVETVWIPDEDRATLCVSSQVGCA 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T  Q   RNL+  EI+ QV    + +G          +   S  R I+N+VMM
Sbjct: 122 LECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIG----------LSNDSAKRPITNVVMM 171

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ +  D +    SKRR+TLSTSG VP +  +G++I V LAISLHA
Sbjct: 172 GMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHA 231

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
             + LR+ +VPIN+KYP++  +   R Y   SNA   ++T EYVML GINDS   A  L 
Sbjct: 232 PDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L   P KINLIPFNP+PG  Y  S    I  F++ +   G    +R  RG DI AACG
Sbjct: 292 KVLADTPCKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACG 351

Query: 364 QL 365
           QL
Sbjct: 352 QL 353


>gi|205829853|sp|Q15R53|RLMN_PSEA6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 376

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 156/362 (43%), Positives = 208/362 (57%), Gaps = 21/362 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+   R  L E    IG        R  Q+ KWIY  G+ DF  M+++++ +R  L 
Sbjct: 7   KINLLNFNRAGLREYFSSIG----EKPFRADQMMKWIYQAGVSDFDQMTNLNKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PEI  ++ + DGT K+ LR       G  E+ETV+IP++ R TLCVSSQVGC+
Sbjct: 63  AQCEVKAPEIAYQQGASDGTIKFALRLE-----GGQEVETVWIPDEDRATLCVSSQVGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T  Q   RNL+  EI+ QV    + +G          +   S  R I+N+VMM
Sbjct: 118 LECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIG----------LSNDSAKRPITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ +  D +    SKRR+TLSTSG VP +  +G++I V LAISLHA
Sbjct: 168 GMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
             + LR+ +VPIN+KYP++  +   R Y   SNA   ++T EYVML GINDS   A  L 
Sbjct: 228 PDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELA 287

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L   P KINLIPFNP+PG  Y  S    I  F++ +   G    +R  RG DI AACG
Sbjct: 288 KVLADTPCKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACG 347

Query: 364 QL 365
           QL
Sbjct: 348 QL 349


>gi|254252255|ref|ZP_04945573.1| hypothetical protein BDAG_01475 [Burkholderia dolosa AUO158]
 gi|124894864|gb|EAY68744.1| hypothetical protein BDAG_01475 [Burkholderia dolosa AUO158]
          Length = 379

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 208/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    SI  P+IV + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNASDFDGMTDLAKSLREKLKGRASIAMPDIVSDHVSADGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE +RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEGTRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R ++N+VMMGMGEPL N++ V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYNAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 317 SKPEQIKRFAQILIDAGIVTTVRKTRGDDIDAACGQLAGAVK 358


>gi|145638726|ref|ZP_01794335.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae PittII]
 gi|145272321|gb|EDK12229.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae PittII]
          Length = 383

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 156/363 (42%), Positives = 215/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKQLG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++L   P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 294 AEVLNNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353

Query: 363 GQL 365
           GQL
Sbjct: 354 GQL 356


>gi|309750216|gb|ADO80200.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus
           influenzae R2866]
          Length = 390

 Score =  282 bits (721), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 156/363 (42%), Positives = 215/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 21  KKINLMDLTRQQMREFFKQLG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 77  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++L   P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 301 AEVLNNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 360

Query: 363 GQL 365
           GQL
Sbjct: 361 GQL 363


>gi|311278552|ref|YP_003940783.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
 gi|308747747|gb|ADO47499.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
          Length = 388

 Score =  282 bits (721), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R++L E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 21  KINLLDLNRQQLREFFHNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P++V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPDVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMNYGFTTIVRKTRGDDIDAACG 360

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 361 QLAGDVIDRTKRTMRKRMQ 379


>gi|186476180|ref|YP_001857650.1| radical SAM protein [Burkholderia phymatum STM815]
 gi|205829685|sp|B2JIV3|RLMN_BURP8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|184192639|gb|ACC70604.1| radical SAM enzyme, Cfr family [Burkholderia phymatum STM815]
          Length = 382

 Score =  282 bits (721), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 148/339 (43%), Positives = 204/339 (60%), Gaps = 6/339 (1%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    SI  P +V + IS DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRASITMPPVVSDHISSDGTRKWLVD- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNL   EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLGTGEIIGQLR 143

Query: 153 LARSLLGDFPGCEDIEGMVIPSVG-RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +A   L    G            G R ++N+VMMGMGEPL N+D V  ++ +  D     
Sbjct: 144 MAEFALRASRGTAGGRATGGDGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYG 203

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+TLSTSG VP + R+G ++ V LA+SLHA ++ LR+ LVP+N+KYPL  L+ AC+
Sbjct: 204 LSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPNDALRDELVPLNKKYPLRELMAACQ 263

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y  ++    ITFEY ML G+NDS   A  L+ + + +P K NLIPFNP+P    L S  
Sbjct: 264 RYLKVAPRDFITFEYCMLDGVNDSEAHARELLAVTRDVPCKFNLIPFNPFPESGLLRSKS 323

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 324 EQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAVK 362


>gi|94311047|ref|YP_584257.1| hypothetical protein Rmet_2109 [Cupriavidus metallidurans CH34]
 gi|123260051|sp|Q1LLI8|RLMN_RALME RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|93354899|gb|ABF08988.1| Radical SAM enzyme, Cfr family [Cupriavidus metallidurans CH34]
          Length = 384

 Score =  282 bits (721), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 149/337 (44%), Positives = 202/337 (59%), Gaps = 20/337 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G   F  M+D+++ +R  L     I  P  + +  S DGTRKWLL  
Sbjct: 27  FRARQLQRWIHQFGASHFDAMTDLAKSLREKLATRAEIRSPAAISDHTSSDGTRKWLLD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE +RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 86  ----VGAGNAVETVYIPEDTRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLW 141

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  P  E           R ISN+VMMGMGEPL N+D V  ++ +  D  
Sbjct: 142 MAEFAMRAQLGRGPKDE-----------RVISNVVMMGMGEPLLNYDAVVPAMRLMLDDN 190

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+ +++ V LA+SLHA ++ LR++LVP+NRKYPL  L+ 
Sbjct: 191 AYGLSRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNRKYPLAELMA 250

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           ACR Y   +    ITFEY ML G+ND    A  L+K++  +P K NLIPFNP+P      
Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPESGLKR 310

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S+ + I  F++ +  +G  + IR  RG DI AACGQL
Sbjct: 311 SNNEQIRRFAQVLMDAGIVTTIRKTRGDDIDAACGQL 347


>gi|332087964|gb|EGI93089.1| hypothetical protein SB521682_2897 [Shigella boydii 5216-82]
          Length = 384

 Score =  282 bits (721), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GYQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|289612225|emb|CBI60152.1| unnamed protein product [Sordaria macrospora]
          Length = 278

 Score =  282 bits (721), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 138/270 (51%), Positives = 183/270 (67%), Gaps = 14/270 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ + E+  AL   G   R  ++R  QIW WIY RG  +F  M+DI++     L+
Sbjct: 23  RTDLVGLSKPEIRAALEAAGFDARQAKLRAKQIWHWIYNRGATEFSAMTDIAKAQHPTLD 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  P + + ++S DGTRKWLL  P        + E V+IP+  RGTLCVSSQVGC+
Sbjct: 83  KHFVIGRPNVKEAQVSTDGTRKWLLTSPDG-----QDYEMVFIPDADRGTLCVSSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC+TGT +LVRNLT  EI+ QV+LAR  LG++P   +         GR ++NIVMM
Sbjct: 138 LNCTFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPSQPE---------GRMLTNIVMM 188

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFD V+ +LS+  D  GL+ SKRRITLSTSG VP +AR GEEIGV LA+SLHA
Sbjct: 189 GMGEPLYNFDAVRDALSVVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 248

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG 275
           V+ ++R+ +VP+NRKY +E L+ AC  YPG
Sbjct: 249 VTKEVRDEIVPLNRKYGIEELLQACADYPG 278


>gi|134295845|ref|YP_001119580.1| radical SAM protein [Burkholderia vietnamiensis G4]
 gi|205829687|sp|A4JEP2|RLMN_BURVG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|134139002|gb|ABO54745.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia vietnamiensis
           G4]
          Length = 379

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 145/342 (42%), Positives = 208/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    +I  PEI  + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRATIGMPEIASDHVSADGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R ++N+VMMGMGEPL N++ V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYNAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358


>gi|325577793|ref|ZP_08148068.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160538|gb|EGC72664.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC
           33392]
          Length = 382

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 154/363 (42%), Positives = 217/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 13  KKINLMDLTRQQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 68

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 69  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 122

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 123 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + ++I V LAISLH
Sbjct: 173 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMLRDKIDVALAISLH 232

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ ++PIN+KY + ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 233 APNDELRDEIMPINKKYNIRMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 292

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 293 AKVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 352

Query: 363 GQL 365
           GQL
Sbjct: 353 GQL 355


>gi|194290009|ref|YP_002005916.1| hypothetical protein RALTA_A1912 [Cupriavidus taiwanensis LMG
           19424]
 gi|193223844|emb|CAQ69853.1| Conserved hypothetical protein; radical SAM enzyme, Cfr family
           domain; putative iron binding enzyme [Cupriavidus
           taiwanensis LMG 19424]
          Length = 384

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 147/333 (44%), Positives = 204/333 (61%), Gaps = 12/333 (3%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G   F  MSD+++ +R  L     I  P ++ + +S DGTRKWLL  
Sbjct: 27  FRARQLQRWIHHYGASRFDAMSDLAKSLREKLATRAEIRAPAVITDNLSADGTRKWLLD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 86  ----VGEGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLW 141

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   + +  G     G   P   R ISN+VMMGMGEPL N+D V  ++ +  D      
Sbjct: 142 MAEFAMREQLG----RG---PKDDRVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGL 194

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+TLSTSG VP + R+ +++ V LA+SLHA ++ LR++LVP+N+KYPL  L+ ACR 
Sbjct: 195 SRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRR 254

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEY ML G+ND    A  L+K++  +P K NLIPFNP+P      S+ +
Sbjct: 255 YLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPESGLKRSNNE 314

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F++ +  +G  + IR  RG DI AACGQL
Sbjct: 315 QIRRFAQVLMDAGVVTTIRKTRGDDIDAACGQL 347


>gi|269140148|ref|YP_003296849.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202]
 gi|267985809|gb|ACY85638.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202]
 gi|304559982|gb|ADM42646.1| Ribosomal RNA large subunit methyltransferase N [Edwardsiella tarda
           FL6-60]
          Length = 411

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 161/363 (44%), Positives = 213/363 (58%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E  +++G        R  QI KWIY     DF  M+DI++ +R  L
Sbjct: 43  EKINLLDLDRKQMREFFIQMG----EKPFRADQIMKWIYHYCCDDFDVMTDINKVLRAKL 98

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW L+       G   +ETVYIPE  R TLCVSSQVGC
Sbjct: 99  KQVAEIRAPEVAVEQRSSDGTIKWALQV------GDQRVETVYIPEDDRATLCVSSQVGC 152

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G     + + G       R I+N+VM
Sbjct: 153 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AQKVTG------NRPITNVVM 202

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 203 MGMGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 262

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VPINRKY ++M + + R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 263 APNDAIRDEIVPINRKYNIDMFLGSVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 322

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  +  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 323 AECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 382

Query: 363 GQL 365
           GQL
Sbjct: 383 GQL 385


>gi|157161992|ref|YP_001459310.1| hypothetical protein EcHS_A2668 [Escherichia coli HS]
 gi|205829751|sp|A8A323|RLMN_ECOHS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157067672|gb|ABV06927.1| radical SAM enzyme, Cfr family [Escherichia coli HS]
          Length = 384

 Score =  281 bits (720), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEVDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|73541777|ref|YP_296297.1| hypothetical protein Reut_A2089 [Ralstonia eutropha JMP134]
 gi|123732898|sp|Q46ZI0|RLMN_RALEJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|72119190|gb|AAZ61453.1| Conserved hypothetical protein 48 [Ralstonia eutropha JMP134]
          Length = 384

 Score =  281 bits (720), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 148/333 (44%), Positives = 202/333 (60%), Gaps = 12/333 (3%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G   F  MSD+++ +R  L     I  P  + + +S DGTRKWLL  
Sbjct: 27  FRARQLQRWIHQFGASRFDAMSDLAKSLREKLATRAEIRSPAAITDNLSADGTRKWLLD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNLT  EI+ Q+ 
Sbjct: 86  ----VGNGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLW 141

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   + +  G     G   P   R ISN+VMMGMGEPL N+D V  ++ +  D      
Sbjct: 142 MAEFAMREQLG----RG---PKDDRVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGL 194

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+TLSTSG VP + R+ +++ V LA+SLHA ++ LR++LVP+N+KYPL  L+ ACR 
Sbjct: 195 SRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRR 254

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEY ML G+ND    A  L+K++  +P K NLIPFNP+P      S+  
Sbjct: 255 YLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPESGLKRSNND 314

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F++ +  +G  + IR  RG DI AACGQL
Sbjct: 315 QIRRFAQVLMDAGIVTTIRKTRGDDIDAACGQL 347


>gi|209763358|gb|ACI79991.1| hypothetical protein ECs3379 [Escherichia coli]
 gi|320646304|gb|EFX15231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H- str. 493-89]
 gi|320651809|gb|EFX20189.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H- str. H 2687]
          Length = 384

 Score =  281 bits (720), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+P   Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|308274581|emb|CBX31180.1| Ribosomal RNA large subunit methyltransferase N [uncultured
           Desulfobacterium sp.]
          Length = 347

 Score =  281 bits (720), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 159/368 (43%), Positives = 227/368 (61%), Gaps = 25/368 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN   K+++I + ++E    L ++GI       RT QI+KWIY + +  F+ M+DI  E+
Sbjct: 1   MNSESKKNIIELTKDEFSFWLKEMGIEA----YRTHQIFKWIYSKQVDTFEEMTDIGLEL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R LL  H++I        +IS DG++K+L       +     IE+V IPEK+  TLC+SS
Sbjct: 57  RKLLLNHYTINRLNKQKVEISSDGSKKYLF-----GLTDGNYIESVLIPEKNHYTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+  C FC T      RNLT  EI+ QV   R +  D  G    E +       ++S
Sbjct: 112 QVGCAQGCRFCLTAKGGFARNLTKAEIVSQV---RDIQNDVAG----EKL-------RLS 157

Query: 181 NIVMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           NIV MGMGEPL N+ NV K++ +I++   GL FSKR+IT+ST+G VP +  +G++ GV L
Sbjct: 158 NIVFMGMGEPLANYKNVIKAIDTISAKDTGLGFSKRKITISTAGLVPFLKDLGKDAGVNL 217

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           AISL+A  N  R++L+PINRKYP++ LI+ACR Y  L    RITFEY+++KG+NDSP DA
Sbjct: 218 AISLNAADNSTRDMLMPINRKYPVKELIEACRTYD-LKPRNRITFEYILIKGVNDSPADA 276

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L K+L+ + +KINLIPFN +   E+   ++  I  F   +    Y++ IR  +G DI 
Sbjct: 277 NRLAKLLRPVKSKINLIPFNEYETSEFKRPEESVIHHFLNILLNENYTAVIRNSKGQDIS 336

Query: 360 AACGQLKS 367
           AACGQL++
Sbjct: 337 AACGQLRA 344


>gi|161524634|ref|YP_001579646.1| radical SAM protein [Burkholderia multivorans ATCC 17616]
 gi|189350610|ref|YP_001946238.1| Cfr family radical SAM enzyme [Burkholderia multivorans ATCC 17616]
 gi|160342063|gb|ABX15149.1| radical SAM enzyme, Cfr family [Burkholderia multivorans ATCC
           17616]
 gi|189334632|dbj|BAG43702.1| Cfr family radical SAM enzyme [Burkholderia multivorans ATCC 17616]
          Length = 378

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 145/342 (42%), Positives = 209/342 (61%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     +F GM+D+++ +R  L    SI  P+IV + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAGNFDGMTDLAKSLREKLKGRASITMPDIVSDHVSADGTRKWLVD- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R ++N+VMMGMGEPL N++ V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYNAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 317 SKPEQIKRFAQILIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358


>gi|229846452|ref|ZP_04466560.1| hypothetical protein CGSHi7P49H1_07265 [Haemophilus influenzae
           7P49H1]
 gi|229810545|gb|EEP46263.1| hypothetical protein CGSHi7P49H1_07265 [Haemophilus influenzae
           7P49H1]
          Length = 383

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 156/363 (42%), Positives = 215/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KTVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353

Query: 363 GQL 365
           GQL
Sbjct: 354 GQL 356


>gi|149908872|ref|ZP_01897532.1| Hypothetical protein yfgB [Moritella sp. PE36]
 gi|149808146|gb|EDM68087.1| Hypothetical protein yfgB [Moritella sp. PE36]
          Length = 371

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 160/380 (42%), Positives = 219/380 (57%), Gaps = 25/380 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ + +    IG        R  Q+ KWIY  G  D   M+++++++R  L
Sbjct: 4   KKINLLDLDRKAMRQYFADIG----EKPFRADQVMKWIYHEGCDDINEMTNLNKKLREKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PEI  E+ S DGT KW L+   +      E ETVYIP+  R TLCVSSQVGC
Sbjct: 60  LRETVIQAPEISKEQRSADGTIKWALKVDGQ------EYETVYIPDGDRATLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 114 ALECTFCSTAQQGFNRNLRVSEIIGQVWRASQVIG------------FNNKKRAITNVVM 161

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  N+  +L+I  D  G   SKRR+T+STSG VP + ++ + I V LAISLH
Sbjct: 162 MGMGEPLLNMTNLVPALNIMLDDYGFGLSKRRVTVSTSGVVPALDKLADSIDVALAISLH 221

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302
           A ++ LR+ LVPIN+KY +EML+ + ++Y G SNA R  +T EYV+L  +NDS   A  L
Sbjct: 222 ASNDTLRDELVPINKKYNIEMLLASVKNYIGKSNANRKKVTIEYVLLDHVNDSTDQAHEL 281

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIPFNP+PG +Y       I  F++ +     +  IR  RG DI AAC
Sbjct: 282 AHLLKDTPCKINLIPFNPFPGSDYGKPSNSRIDRFNKVLMEYENTVTIRKTRGDDIDAAC 341

Query: 363 GQLK-SLSKRIPKVPRQEMQ 381
           GQL   +  R  +  ++ MQ
Sbjct: 342 GQLAGDVIDRTKRTLKKRMQ 361


>gi|261340821|ref|ZP_05968679.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
           35316]
 gi|288317247|gb|EFC56185.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
           35316]
          Length = 388

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     +F  M+DI++ +R+ L 
Sbjct: 21  KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGT------RPITNVVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++ +R+ +VPIN+KY +E  +   R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 241 PNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 360

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379


>gi|16272313|ref|NP_438526.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           influenzae Rd KW20]
 gi|260580572|ref|ZP_05848400.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           influenzae RdAW]
 gi|1175973|sp|P44665|RLMN_HAEIN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|1573332|gb|AAC22023.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092914|gb|EEW76849.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           influenzae RdAW]
          Length = 390

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 156/363 (42%), Positives = 215/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 21  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 77  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 301 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 360

Query: 363 GQL 365
           GQL
Sbjct: 361 GQL 363


>gi|167823864|ref|ZP_02455335.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           9]
 gi|226197115|ref|ZP_03792692.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pakistan
           9]
 gi|237812551|ref|YP_002897002.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei MSHR346]
 gi|225930494|gb|EEH26504.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pakistan
           9]
 gi|237502725|gb|ACQ95043.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei MSHR346]
          Length = 378

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 147/342 (42%), Positives = 208/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L     I  P+I+ + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG           V R I+N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KVERVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLVR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + IR  RG DI AACGQL    K
Sbjct: 317 SKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358


>gi|85712740|ref|ZP_01043785.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145]
 gi|85693472|gb|EAQ31425.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145]
          Length = 378

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 162/385 (42%), Positives = 231/385 (60%), Gaps = 26/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ ++    ++G        R  Q+ KW+Y   + DF  M+++++ +R  L
Sbjct: 7   KKVNLLNLNRDGMKAFFKEMG----EKPFRADQVMKWLYHFCVDDFDEMTNLNKGLREKL 62

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PEI +++ S DGT K+++      +    ++ETV+IPE+ R TLCVSSQVGC
Sbjct: 63  KQCAEIRAPEIREQQQSSDGTIKFVM-----TLFDGQDVETVWIPERDRATLCVSSQVGC 117

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG Q   RNL   EI+ QV     LLG + G   I         + ++N+VM
Sbjct: 118 ALECTFCSTGQQGFNRNLNVAEIIGQVWRVNQLLGAY-GKTGI---------KPVTNVVM 167

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ +  D  G   SKRR+TLSTSG VP + ++ E+I VMLAISLH
Sbjct: 168 MGMGEPLLNLNNVVPAMDLMMDDYGFGLSKRRVTLSTSGVVPALDKLREQIDVMLAISLH 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLI 303
           A +++LRN +VPIN+KY +E  + + R Y   S A+ ++T EYVML  +NDS   A  L 
Sbjct: 228 APNDELRNEIVPINKKYNIEQFLASSRKYVEQSKAQHKVTVEYVMLDHVNDSMDQAHELA 287

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P+KINLIPFNP+PG +Y  S    I  F++ +   G++  +R  RG DI AACG
Sbjct: 288 RTLKDTPSKINLIPFNPFPGSDYGRSSNSRIDRFAKVLMDYGFTVMVRKTRGDDIDAACG 347

Query: 364 QLK----SLSKRIPKVPRQEMQITG 384
           QL       +KRI K  RQ+ Q  G
Sbjct: 348 QLVGDVIDRTKRILK--RQQAQRGG 370


>gi|218706020|ref|YP_002413539.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           UMN026]
 gi|293405958|ref|ZP_06649950.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
 gi|298381759|ref|ZP_06991358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           FVEC1302]
 gi|300898379|ref|ZP_07116722.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
 gi|254807179|sp|B7N6A5|RLMN_ECOLU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|218433117|emb|CAR14014.1| putative Fe-S containing enzyme [Escherichia coli UMN026]
 gi|291428166|gb|EFF01193.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
 gi|298279201|gb|EFI20715.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           FVEC1302]
 gi|300357919|gb|EFJ73789.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
          Length = 384

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRCYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|295097942|emb|CBK87032.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 388

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     +F  M+DI++ +R+ L 
Sbjct: 21  KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGT------RPITNVVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++ +R+ +VPIN+KY +E  +   R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 241 PNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 360

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379


>gi|213580692|ref|ZP_03362518.1| hypothetical protein SentesTyph_05537 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 386

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 162/384 (42%), Positives = 220/384 (57%), Gaps = 23/384 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +N   K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +
Sbjct: 16  LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSS
Sbjct: 72  RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSS 125

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPIT 175

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LA
Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 235

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298
           ISLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    
Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI
Sbjct: 296 AHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDI 355

Query: 359 LAACGQLK-SLSKRIPKVPRQEMQ 381
            AACGQL   +  R  +  R+ MQ
Sbjct: 356 DAACGQLAGDVIDRTKRTLRKRMQ 379


>gi|30248171|ref|NP_840241.1| hypothetical protein NE0145 [Nitrosomonas europaea ATCC 19718]
 gi|30180056|emb|CAD84056.1| Conserved hypothetical protein 48 [Nitrosomonas europaea ATCC
           19718]
          Length = 361

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 151/337 (44%), Positives = 204/337 (60%), Gaps = 10/337 (2%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+ +W++  G  DF  MSD+++  RH L +   +  PEIV +  + DGTRKWLL   
Sbjct: 7   RARQLLRWVHQSGKTDFMEMSDLAKGFRHKLMECAVVQLPEIVSDHTAGDGTRKWLL--- 63

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
               G    +E V+IPE SRGTLCVSSQVGC+L CSFC TG Q   RNL+  EI+ Q+  
Sbjct: 64  --STGAGNAVEMVFIPEPSRGTLCVSSQVGCALACSFCSTGRQGFNRNLSVAEIIGQLWW 121

Query: 154 ARSLL-----GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           A  LL       FP          P   R ++N+VMMGMGEPL NF+N+  +L +     
Sbjct: 122 ANRLLEAGSHDPFPLDTTRVQTDKPETRRPVTNVVMMGMGEPLANFENLVTALDLMLSDD 181

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+T+STSG VP + R+ E   V LA+SLHA ++ LR+ LVPIN+KYP+  L+ 
Sbjct: 182 AYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPNDALRDQLVPINKKYPIRDLLA 241

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC  Y   +    ITFEYVMLKG+NDS   A  L+++++ +P K+NLIPFN + G  Y  
Sbjct: 242 ACERYLPAAPRDFITFEYVMLKGVNDSVALARELVQLVRNVPCKLNLIPFNAFSGSGYER 301

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S  + I  F + + ++G  + +R  RG DI AACGQL
Sbjct: 302 SGAEAIGNFRDVLMQAGIVTTVRKTRGDDIAAACGQL 338


>gi|24113846|ref|NP_708356.1| hypothetical protein SF2563 [Shigella flexneri 2a str. 301]
 gi|30063909|ref|NP_838080.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T]
 gi|110806448|ref|YP_689968.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
           5 str. 8401]
 gi|81723142|sp|Q83K42|RLMN_SHIFL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123342626|sp|Q0T202|RLMN_SHIF8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|24052937|gb|AAN44063.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30042165|gb|AAP17890.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T]
 gi|110615996|gb|ABF04663.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|313651003|gb|EFS15403.1| UPF0063 protein yfgB [Shigella flexneri 2a str. 2457T]
 gi|332754204|gb|EGJ84572.1| hypothetical protein SF434370_2731 [Shigella flexneri 4343-70]
 gi|332755567|gb|EGJ85931.1| hypothetical protein SFK671_3114 [Shigella flexneri K-671]
 gi|332756478|gb|EGJ86829.1| hypothetical protein SF274771_3067 [Shigella flexneri 2747-71]
 gi|332766350|gb|EGJ96560.1| 23S rRNA methyltransferase [Shigella flexneri 2930-71]
 gi|333016202|gb|EGK35533.1| hypothetical protein SFK304_3333 [Shigella flexneri K-304]
          Length = 384

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+P   Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPDAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|301154683|emb|CBW14146.1| predicted enzyme [Haemophilus parainfluenzae T3T1]
          Length = 382

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 153/363 (42%), Positives = 218/363 (60%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 13  KKINLMDLTRQQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 68

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 69  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 122

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 123 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + ++I V LAISLH
Sbjct: 173 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMLRDKIDVALAISLH 232

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ ++PIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 233 APNDELRDEIMPINKKYNIKMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 292

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 293 AQVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 352

Query: 363 GQL 365
           GQL
Sbjct: 353 GQL 355


>gi|15832633|ref|NP_311406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. Sakai]
 gi|168748424|ref|ZP_02773446.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756289|ref|ZP_02781296.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761127|ref|ZP_02786134.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768609|ref|ZP_02793616.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773569|ref|ZP_02798576.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778483|ref|ZP_02803490.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787863|ref|ZP_02812870.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC869]
 gi|168798888|ref|ZP_02823895.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC508]
 gi|195936659|ref|ZP_03082041.1| hypothetical protein EscherichcoliO157_09385 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808631|ref|ZP_03250968.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814380|ref|ZP_03255709.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820776|ref|ZP_03261096.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400754|ref|YP_002271987.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327135|ref|ZP_03443218.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794463|ref|YP_003079300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. TW14359]
 gi|261223051|ref|ZP_05937332.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259398|ref|ZP_05951931.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK966]
 gi|291283738|ref|YP_003500556.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
           CB9615]
 gi|205829862|sp|Q8XAA4|RLMN_ECO57 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807175|sp|B5Z0Y6|RLMN_ECO5E RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|13362849|dbj|BAB36802.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187770632|gb|EDU34476.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017093|gb|EDU55215.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003147|gb|EDU72133.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356574|gb|EDU74993.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362276|gb|EDU80695.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368421|gb|EDU86837.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372335|gb|EDU90751.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC869]
 gi|189378598|gb|EDU97014.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC508]
 gi|208728432|gb|EDZ78033.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735657|gb|EDZ84344.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740899|gb|EDZ88581.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162154|gb|ACI39587.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209763360|gb|ACI79992.1| hypothetical protein ECs3379 [Escherichia coli]
 gi|209763362|gb|ACI79993.1| hypothetical protein ECs3379 [Escherichia coli]
 gi|209763364|gb|ACI79994.1| hypothetical protein ECs3379 [Escherichia coli]
 gi|209763366|gb|ACI79995.1| hypothetical protein ECs3379 [Escherichia coli]
 gi|217319502|gb|EEC27927.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           TW14588]
 gi|254593863|gb|ACT73224.1| predicted enzyme [Escherichia coli O157:H7 str. TW14359]
 gi|290763611|gb|ADD57572.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
           CB9615]
 gi|320188850|gb|EFW63509.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640861|gb|EFX10349.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. G5101]
 gi|320657195|gb|EFX25004.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320662801|gb|EFX30133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320667605|gb|EFX34520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326340315|gb|EGD64119.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. 1125]
 gi|326344999|gb|EGD68743.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. 1044]
          Length = 384

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+P   Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|271501574|ref|YP_003334600.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
 gi|270345129|gb|ACZ77894.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
          Length = 392

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 159/380 (41%), Positives = 218/380 (57%), Gaps = 23/380 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+   R+++     ++G        R  Q+ KW+Y     DF  M+DI++ +R  L
Sbjct: 24  EKINLLDFNRQQMRAFFAQLG----EKPFRADQVMKWMYHYCCDDFNQMTDINKVLRGKL 79

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+VDE+ S DGT KW +    +       +ETVYIPE  R TLCVSSQVGC
Sbjct: 80  QAIAEIRAPEVVDEQRSSDGTIKWAILVDGQ------RVETVYIPEDDRATLCVSSQVGC 133

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VM
Sbjct: 134 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 184 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++++RN ++PIN+KY +E  + A R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 244 APTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQL 303

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 304 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 363

Query: 363 GQLK-SLSKRIPKVPRQEMQ 381
           GQL   +  R  +  +++M+
Sbjct: 364 GQLAGEVVDRTKRTLKKKME 383


>gi|145632612|ref|ZP_01788346.1| hypothetical protein CGSHi3655_02319 [Haemophilus influenzae 3655]
 gi|144986807|gb|EDJ93359.1| hypothetical protein CGSHi3655_02319 [Haemophilus influenzae 3655]
          Length = 383

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/363 (43%), Positives = 214/363 (58%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M +I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMININKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++MLID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 294 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353

Query: 363 GQL 365
           GQL
Sbjct: 354 GQL 356


>gi|16761440|ref|NP_457057.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29140863|ref|NP_804205.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56412596|ref|YP_149671.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62181092|ref|YP_217509.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161612716|ref|YP_001586681.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167549454|ref|ZP_02343213.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168232093|ref|ZP_02657151.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168238262|ref|ZP_02663320.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243305|ref|ZP_02668237.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168261436|ref|ZP_02683409.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168466724|ref|ZP_02700578.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168821500|ref|ZP_02833500.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194444721|ref|YP_002041783.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194448097|ref|YP_002046583.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194469426|ref|ZP_03075410.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194738017|ref|YP_002115587.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197361531|ref|YP_002141167.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198245006|ref|YP_002216589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200388216|ref|ZP_03214828.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204929473|ref|ZP_03220547.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205353624|ref|YP_002227425.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207857933|ref|YP_002244584.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|213161946|ref|ZP_03347656.1| hypothetical protein Salmoneentericaenterica_18887 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213425329|ref|ZP_03358079.1| hypothetical protein SentesTyphi_06363 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649661|ref|ZP_03379714.1| hypothetical protein SentesTy_21620 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213857325|ref|ZP_03384296.1| hypothetical protein SentesT_19305 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224582938|ref|YP_002636736.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|289825424|ref|ZP_06544661.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|75481689|sp|Q57LI4|RLMN_SALCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81362045|sp|Q5PNI4|RLMN_SALPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81628152|sp|Q8Z4P2|RLMN_SALTI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829875|sp|A9N1Z8|RLMN_SALPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807202|sp|B5FR66|RLMN_SALDC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807203|sp|B5R584|RLMN_SALEP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807204|sp|B5RCZ4|RLMN_SALG2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807205|sp|B4TD95|RLMN_SALHS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807206|sp|B4T0Q1|RLMN_SALNS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807207|sp|C0PYM8|RLMN_SALPC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807208|sp|B5BAY3|RLMN_SALPK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807209|sp|B4TR97|RLMN_SALSV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|25320182|pir||AD0822 conserved hypothetical protein STY2770 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503740|emb|CAD02728.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136488|gb|AAO68054.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56126853|gb|AAV76359.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128725|gb|AAX66428.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161362080|gb|ABX65848.1| hypothetical protein SPAB_00414 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403384|gb|ACF63606.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194406401|gb|ACF66620.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194455790|gb|EDX44629.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194713519|gb|ACF92740.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195630780|gb|EDX49372.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197093007|emb|CAR58440.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197288805|gb|EDY28178.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197939522|gb|ACH76855.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605314|gb|EDZ03859.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204321192|gb|EDZ06392.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205273405|emb|CAR38380.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325472|gb|EDZ13311.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205333531|gb|EDZ20295.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337567|gb|EDZ24331.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205342014|gb|EDZ28778.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205349318|gb|EDZ35949.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206709736|emb|CAR34088.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467465|gb|ACN45295.1| hypothetical protein SPC_1129 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|320087020|emb|CBY96789.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503
           methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|322613730|gb|EFY10669.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322619527|gb|EFY16403.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322625032|gb|EFY21861.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322629525|gb|EFY26301.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634044|gb|EFY30781.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322635518|gb|EFY32229.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322639806|gb|EFY36485.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322644428|gb|EFY40969.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648573|gb|EFY45022.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655207|gb|EFY51516.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658254|gb|EFY54520.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664255|gb|EFY60452.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669422|gb|EFY65571.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322673149|gb|EFY69255.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676541|gb|EFY72609.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322683291|gb|EFY79305.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685823|gb|EFY81816.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|322715579|gb|EFZ07150.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|323194766|gb|EFZ79954.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323199546|gb|EFZ84637.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204679|gb|EFZ89677.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323208127|gb|EFZ93072.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323210149|gb|EFZ95050.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323217017|gb|EGA01739.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221815|gb|EGA06219.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225006|gb|EGA09261.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323229295|gb|EGA13419.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323235390|gb|EGA19474.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323237424|gb|EGA21487.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323245178|gb|EGA29179.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248881|gb|EGA32807.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323253168|gb|EGA37000.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255402|gb|EGA39170.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262039|gb|EGA45604.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323266350|gb|EGA49838.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269819|gb|EGA53269.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326624345|gb|EGE30690.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326628724|gb|EGE35067.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 388

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 162/384 (42%), Positives = 220/384 (57%), Gaps = 23/384 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +N   K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +
Sbjct: 16  LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSS
Sbjct: 72  RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSS 125

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPIT 175

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LA
Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 235

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298
           ISLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    
Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI
Sbjct: 296 AHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDI 355

Query: 359 LAACGQLK-SLSKRIPKVPRQEMQ 381
            AACGQL   +  R  +  R+ MQ
Sbjct: 356 DAACGQLAGDVIDRTKRTLRKRMQ 379


>gi|242240158|ref|YP_002988339.1| ribosomal RNA large subunit methyltransferase N [Dickeya dadantii
           Ech703]
 gi|242132215|gb|ACS86517.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech703]
          Length = 393

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/362 (43%), Positives = 209/362 (57%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++      +G        R  Q+ KWIY     DF  M+DI++ +R  L 
Sbjct: 25  KINLLDLNRQQMRAFFAALG----EKPFRADQVMKWIYHYCCDDFNQMTDINKALRTRLQ 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  P++VDE+ S DGT KW +    +       +ETVYIPE  R TLCVSSQVGC+
Sbjct: 81  AIAEIRAPDVVDEQRSSDGTIKWAILVDGQ------RVETVYIPEDDRATLCVSSQVGCA 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVMM 184

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 185 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 244

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++RN ++PIN+KY +E  + A R Y   SNA   R+T EYVML  IND    A  L 
Sbjct: 245 PTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQLA 304

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 305 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 364

Query: 364 QL 365
           QL
Sbjct: 365 QL 366


>gi|260582543|ref|ZP_05850333.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           influenzae NT127]
 gi|260094354|gb|EEW78252.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           influenzae NT127]
          Length = 390

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 156/363 (42%), Positives = 214/363 (58%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 21  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 77  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 301 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 360

Query: 363 GQL 365
           GQL
Sbjct: 361 GQL 363


>gi|85059741|ref|YP_455443.1| hypothetical protein SG1763 [Sodalis glossinidius str. 'morsitans']
 gi|123752598|sp|Q2NS37|RLMN_SODGM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|84780261|dbj|BAE75038.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 393

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 159/363 (43%), Positives = 210/363 (57%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ M R++L E    +G        R  Q+ KWIY     DF  M+DI++ +R  L
Sbjct: 25  QKLNLLDMNRQQLREFFSSMG----EKPFRADQVMKWIYHYCCDDFDQMTDINKHLRARL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 81  KALAEIRAPEVAEEQRSADGTIKWAIKV------GDQQVETVYIPEDDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VM
Sbjct: 135 ALQCTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 185 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALEKLGDMIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VPINRKY +E  + A R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 245 APNDTIRDEIVPINRKYNIETFLSAVRCYLDKSNANKGRVTVEYVMLDHINDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
              LK  P KINLIP+NP+PG  Y  S    +  F++ +    +++ +R  RG DI AAC
Sbjct: 305 AACLKYTPCKINLIPWNPFPGAPYGRSSNSRVDRFAKVLMGYEFTTIVRKTRGDDIDAAC 364

Query: 363 GQL 365
           GQL
Sbjct: 365 GQL 367


>gi|205829851|sp|Q82XV4|RLMN_NITEU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 379

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 151/337 (44%), Positives = 204/337 (60%), Gaps = 10/337 (2%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+ +W++  G  DF  MSD+++  RH L +   +  PEIV +  + DGTRKWLL   
Sbjct: 25  RARQLLRWVHQSGKTDFMEMSDLAKGFRHKLMECAVVQLPEIVSDHTAGDGTRKWLL--- 81

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
               G    +E V+IPE SRGTLCVSSQVGC+L CSFC TG Q   RNL+  EI+ Q+  
Sbjct: 82  --STGAGNAVEMVFIPEPSRGTLCVSSQVGCALACSFCSTGRQGFNRNLSVAEIIGQLWW 139

Query: 154 ARSLL-----GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           A  LL       FP          P   R ++N+VMMGMGEPL NF+N+  +L +     
Sbjct: 140 ANRLLEAGSHDPFPLDTTRVQTDKPETRRPVTNVVMMGMGEPLANFENLVTALDLMLSDD 199

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+T+STSG VP + R+ E   V LA+SLHA ++ LR+ LVPIN+KYP+  L+ 
Sbjct: 200 AYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPNDALRDQLVPINKKYPIRDLLA 259

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC  Y   +    ITFEYVMLKG+NDS   A  L+++++ +P K+NLIPFN + G  Y  
Sbjct: 260 ACERYLPAAPRDFITFEYVMLKGVNDSVALARELVQLVRNVPCKLNLIPFNAFSGSGYER 319

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S  + I  F + + ++G  + +R  RG DI AACGQL
Sbjct: 320 SGAEAIGNFRDVLMQAGIVTTVRKTRGDDIAAACGQL 356


>gi|187928149|ref|YP_001898636.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12J]
 gi|254807195|sp|B2U9U6|RLMN_RALPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|187725039|gb|ACD26204.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12J]
          Length = 383

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 145/337 (43%), Positives = 207/337 (61%), Gaps = 20/337 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G  +F  M+D+++ +R  L    +I  P ++ + +S DGTRKWL+  
Sbjct: 27  FRAKQLQRWIHQSGASEFGEMTDLAKSLREKLATRANIQAPAVISDHLSSDGTRKWLVD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 86  ----VGQGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLW 141

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R  LG  P  +           R I+N+VMMGMGEPL N+D V  +L++  D  
Sbjct: 142 MAEFAMRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPALALMLDDN 190

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+T+STSG VP + R+  ++ V LA+SLHA ++ LR++LVP+N+KYPL  L+ 
Sbjct: 191 AYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHASNDALRDVLVPLNKKYPLAELMA 250

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           ACR Y   +    ITFEY ML G+ND+   A  L++++  +P K NLIPFNP+P      
Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVVADVPCKFNLIPFNPFPESGLKR 310

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S+ + I  FS+ +  +G  + IR  RG DI AACGQL
Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347


>gi|193068396|ref|ZP_03049359.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
 gi|192958348|gb|EDV88788.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
          Length = 384

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 156/352 (44%), Positives = 208/352 (59%), Gaps = 19/352 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KW+Y     +F  M+DI++ +R  L +   I  PE+V+E+ S DGT KW +  
Sbjct: 40  FRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV 99

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G   +ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 100 ------GDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 153

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A  ++G       + G       R I+N+VMMGMGEPL N +NV  ++ I  D  G   
Sbjct: 154 RAAKIVG----AAKVTGQ------RPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGL 203

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           SKRR+TLSTSG VP + ++G+ I V LAISLHA ++++R+ +VPIN+KY +E  + A R 
Sbjct: 204 SKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRR 263

Query: 273 YPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           Y   SNA   R+T EYVML  +ND    A  L ++LK  P KINLIP+NP+PG  Y  S 
Sbjct: 264 YLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSS 323

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK-SLSKRIPKVPRQEMQ 381
              I  FS+ +   G+++ +R  RG DI AACGQL   +  R  +  R+ MQ
Sbjct: 324 NSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 375


>gi|294637694|ref|ZP_06715971.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
 gi|291089124|gb|EFE21685.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
          Length = 411

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 160/363 (44%), Positives = 210/363 (57%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E    +G        R  QI KWIY     DF  M+DI++ +R  L
Sbjct: 43  EKINLLDLNRKQMREFFAAMG----EKPFRADQIMKWIYHYCCDDFDAMTDINKVLRAKL 98

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW L+       G   +ETVYIPE  R TLCVSSQVGC
Sbjct: 99  KQVAEIRAPEVAVEQRSSDGTIKWALQV------GDQRVETVYIPEDDRATLCVSSQVGC 152

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G     + + G       R I+N+VM
Sbjct: 153 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AQKVTG------NRPITNVVM 202

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 203 MGMGEPLLNMTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 262

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VPINRKY +E  + + R Y   SNA   R+T EYVML  +ND    A  L
Sbjct: 263 APNDAIRDQIVPINRKYNIETFLASVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQL 322

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  +  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 323 AECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 382

Query: 363 GQL 365
           GQL
Sbjct: 383 GQL 385


>gi|315634916|ref|ZP_07890198.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393]
 gi|315476468|gb|EFU67218.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393]
          Length = 384

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 154/363 (42%), Positives = 214/363 (58%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R ++ E   ++G        R  Q+ KWIY  G  +F  M+++++++R  L
Sbjct: 16  KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKKLREKL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 72  KSVAEIKAPEVAVEQRSADGTIKWAMQV------GDQQVETVYIPEADRATLCVSSQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 126 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 175

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 176 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 235

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VP+N+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 236 APNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVEHAHQL 295

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G +  +R  RG DI AAC
Sbjct: 296 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAAC 355

Query: 363 GQL 365
           GQL
Sbjct: 356 GQL 358


>gi|260221248|emb|CBA29622.1| Ribosomal RNA large subunit methyltransferase N [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 466

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 147/336 (43%), Positives = 200/336 (59%), Gaps = 17/336 (5%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           + R +Q+++W++ +G   F  MSD+++ +R  L  H  +    ++ + IS DGT KWL  
Sbjct: 24  KFRATQLFRWVHQKGASQFDDMSDLAKSLRDKLRGHAEVRALPVITQHISADGTIKWLFD 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    +ETV+IPE  RGTLC+SSQ GC++ C FC TG Q   RNL   EIL Q+
Sbjct: 84  -----VGNGDAVETVFIPESDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLKTWEILAQL 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L    G  D          R ISN+VMMGMGEPL N+  +  +L +  D  G  
Sbjct: 139 WFAEHFLRSHLGVSD----------RVISNVVMMGMGEPLQNYVALVPALKVMLDDHGYG 188

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP + R+GE+  V LA+SLHA  + LR+ LVP+NRKYPL+ L++ACR
Sbjct: 189 LSRRRVTVSTSGVVPMMDRLGEDCPVALAVSLHAPEDSLRDNLVPLNRKYPLKELMEACR 248

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCS 329
            Y   +    ITFEY ML G+ND P  A  L++++K  G+P K NLIPFNP+P    L S
Sbjct: 249 RYLAHAPRDFITFEYCMLDGVNDHPEHAKLLLQLVKESGVPCKFNLIPFNPFPASGLLRS 308

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               +  F+  +   G  + IR  RG DI AACGQL
Sbjct: 309 SNNAVQAFARILVDGGLVTTIRKTRGDDIDAACGQL 344


>gi|83720408|ref|YP_442753.1| radical SAM protein [Burkholderia thailandensis E264]
 gi|167619819|ref|ZP_02388450.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
           Bt4]
 gi|123753780|sp|Q2SWE6|RLMN_BURTA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|83654233|gb|ABC38296.1| radical SAM enzyme, Cfr family [Burkholderia thailandensis E264]
          Length = 378

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 147/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L     I  P+I+ + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R I+N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    L 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALTRDVPCKFNLIPFNPFPESGLLR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + IR  RG DI AACGQL    K
Sbjct: 317 SKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358


>gi|197249479|ref|YP_002147478.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|254807201|sp|B5F1A0|RLMN_SALA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|197213182|gb|ACH50579.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 388

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 162/383 (42%), Positives = 219/383 (57%), Gaps = 23/383 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R
Sbjct: 17  NKEAKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 72

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQ
Sbjct: 73  GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQ 126

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A
Sbjct: 237 SLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI 
Sbjct: 297 HQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356

Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381
           AACGQL   +  R  +  R+ MQ
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379


>gi|167581703|ref|ZP_02374577.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
           TXDOH]
          Length = 378

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 147/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L     I  P+I+ + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R I+N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    L 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALTRDVPCKFNLIPFNPFPESGLLR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + IR  RG DI AACGQL    K
Sbjct: 317 SKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358


>gi|16765845|ref|NP_461460.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167991834|ref|ZP_02572933.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|197263041|ref|ZP_03163115.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|81594911|sp|Q8ZN52|RLMN_SALTY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|16421069|gb|AAL21419.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197241296|gb|EDY23916.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205329931|gb|EDZ16695.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247721|emb|CBG25549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994643|gb|ACY89528.1| hypothetical protein STM14_3097 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159074|emb|CBW18588.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913512|dbj|BAJ37486.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222774|gb|EFX47845.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323130853|gb|ADX18283.1| radical SAM superfamily protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332989452|gb|AEF08435.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 388

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 162/383 (42%), Positives = 219/383 (57%), Gaps = 23/383 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R
Sbjct: 17  NKETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 72

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQ
Sbjct: 73  GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQ 126

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A
Sbjct: 237 SLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI 
Sbjct: 297 HQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356

Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381
           AACGQL   +  R  +  R+ MQ
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379


>gi|31789482|gb|AAP58595.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
          Length = 396

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 146/335 (43%), Positives = 204/335 (60%), Gaps = 22/335 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R   +QI++WI+ R     +GM+D+S+ +R  L+  F++  P IV ++ S DGTRK +L 
Sbjct: 63  RFHATQIYRWIHRRAATSVEGMTDLSKALRTRLDHEFTLSTPRIVGDETSADGTRKLVLE 122

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
              R       IE+V+IP+    T CVS+QVGC++ C FC TG   LVR+LTA EI  QV
Sbjct: 123 LADR-----RRIESVFIPDTPAMTFCVSTQVGCAMACGFCLTGKMGLVRHLTAGEIAGQV 177

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
                +L    G  D           +  NIV+MGMGEPL N+DN  K+L +     GL+
Sbjct: 178 ----RVLASATGLLD-----------QSFNIVLMGMGEPLHNYDNTMKALRMLHAEAGLA 222

Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            S RR+TLST G VP + R+ +E +   LA+SLHA +++ R  LVP NRKYPL  ++DAC
Sbjct: 223 VSPRRVTLSTVGIVPGLERLAKESLMPNLAVSLHATTDEQRTALVPPNRKYPLAAILDAC 282

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R +P L    RITFEYV+L+G+ND+P DA  L+++L GI +K+NLIP NP PG  +    
Sbjct: 283 RAFP-LKKRNRITFEYVLLEGVNDTPEDAKRLVRLLSGIKSKVNLIPLNPAPGIPFSRPP 341

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              +  F++ + R+  +  +R  RG DI AACGQL
Sbjct: 342 DARVDRFADVLARAHLTVSVRKSRGRDIRAACGQL 376


>gi|115377093|ref|ZP_01464309.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
 gi|310821316|ref|YP_003953674.1| ribosomal RNA large subunit methyltransferase n 2 [Stigmatella
           aurantiaca DW4/3-1]
 gi|115365932|gb|EAU64951.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
 gi|309394388|gb|ADO71847.1| Ribosomal RNA large subunit methyltransferase N 2 [Stigmatella
           aurantiaca DW4/3-1]
          Length = 381

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/338 (45%), Positives = 211/338 (62%), Gaps = 17/338 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91
            R  Q+++W++ RG+  F  M+D+S+ +R  L +   I+ P + D E++S DGT K+  R
Sbjct: 46  FRAGQVYRWLHQRGVTSFDEMTDLSKALRQKLKEQAEIV-PLVKDLEQVSIDGTIKY--R 102

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
           F  R   G   IE+VY+P + R TLCVS+QVGC++ CSFC TGT  L RNLT  EI+ QV
Sbjct: 103 FKTR--DGRF-IESVYMPSEDRKTLCVSTQVGCAMKCSFCMTGTLGLKRNLTPGEIVAQV 159

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
                 +    G E           R +SN+V MGMGEPL NF+N+K +LSI     G +
Sbjct: 160 HTVNREVRAREGLETY---------RPLSNLVFMGMGEPLHNFENLKTALSILQSQDGPN 210

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           FS R IT+ST G VP I R G+E  V LAISL+A +++ RN  +P+NRK+ +E L++ACR
Sbjct: 211 FSHRHITVSTVGLVPMIERFGQETDVKLAISLNASTDEQRNQTMPVNRKWNIEALLEACR 270

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            +P L   RRITFEYV+L+G NDS  DA  LI++L+GIPAK+NLIP+N  PG  +  + +
Sbjct: 271 KFP-LRQGRRITFEYVLLRGFNDSDEDAYRLIELLRGIPAKVNLIPYNENPGLGFHTTGE 329

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           +    F   +     ++ IR  RG DI  ACGQL + S
Sbjct: 330 ERAEQFRAILAEGHIAAFIRQNRGRDIAGACGQLANRS 367


>gi|145636367|ref|ZP_01792036.1| hypothetical protein CGSHiHH_07816 [Haemophilus influenzae PittHH]
 gi|148825353|ref|YP_001290106.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           influenzae PittEE]
 gi|145270532|gb|EDK10466.1| hypothetical protein CGSHiHH_07816 [Haemophilus influenzae PittHH]
 gi|148715513|gb|ABQ97723.1| hypothetical protein CGSHiEE_01185 [Haemophilus influenzae PittEE]
          Length = 383

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 156/363 (42%), Positives = 214/363 (58%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 294 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353

Query: 363 GQL 365
           GQL
Sbjct: 354 GQL 356


>gi|205829858|sp|A5UAC2|RLMN_HAEIE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|309972476|gb|ADO95677.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus
           influenzae R2846]
          Length = 390

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 156/363 (42%), Positives = 214/363 (58%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 21  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 77  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 301 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 360

Query: 363 GQL 365
           GQL
Sbjct: 361 GQL 363


>gi|161502321|ref|YP_001569433.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|205829874|sp|A9MHL3|RLMN_SALAR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|160863668|gb|ABX20291.1| hypothetical protein SARI_00353 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 388

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 162/383 (42%), Positives = 219/383 (57%), Gaps = 23/383 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R
Sbjct: 17  NNEAKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 72

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQ
Sbjct: 73  GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQ 126

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A
Sbjct: 237 SLHAPNDAIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI 
Sbjct: 297 HQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356

Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381
           AACGQL   +  R  +  R+ MQ
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379


>gi|332284656|ref|YP_004416567.1| hypothetical protein PT7_1403 [Pusillimonas sp. T7-7]
 gi|330428609|gb|AEC19943.1| hypothetical protein PT7_1403 [Pusillimonas sp. T7-7]
          Length = 386

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 153/353 (43%), Positives = 209/353 (59%), Gaps = 19/353 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++ RG   F  M+D+++E R  L +H SI  P +  E+ S DGTRKWL   
Sbjct: 29  FRAKQLQRWVHQRGADSFDDMTDLAREFRLQLAEHCSIAAPPVSIEQRSADGTRKWLFD- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +E V+IPE  RGTLC+SSQ GC++ C FC TG Q   RNLT  EI+ Q+ 
Sbjct: 88  ----VGKNNAVEAVFIPEDDRGTLCISSQAGCTVACPFCSTGYQGFNRNLTTAEIIGQLW 143

Query: 153 LARSLL-GDFPGCEDI--EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
            AR +L  D      +  E    P   R ISN+VMMGMGEPL N+D V  +L +  D   
Sbjct: 144 HARRVLQSDMQSARTVSTETQTAPDPARVISNVVMMGMGEPLLNYDQVLGALRLMLDDNA 203

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
              S+RR+T+STSG VP + R+G +  V LA+SLHA ++ LR+ LVP+NRK+PL  L+ A
Sbjct: 204 YGLSRRRVTVSTSGVVPMMDRLGRDCPVALAVSLHAPNDALRDKLVPLNRKHPLAELLAA 263

Query: 270 CRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
           C  Y  L +A R  ITFEY+ML G+ND+ + A  LI I + +  K NLIPFNP+P     
Sbjct: 264 CNRY--LEHAPRDFITFEYIMLDGVNDTDQHARELITIAQQVRCKFNLIPFNPFPQSGLK 321

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS-------LSKRIP 373
            S    +  F++ +  +G  + +R  RG DI AACGQL         +S+R+P
Sbjct: 322 RSPAARVRLFAQRLMDAGIVTTVRKTRGDDIAAACGQLAGDVKDRTRISQRLP 374


>gi|77164417|ref|YP_342942.1| hypothetical protein Noc_0900 [Nitrosococcus oceani ATCC 19707]
 gi|254434279|ref|ZP_05047787.1| radical SAM enzyme, Cfr family [Nitrosococcus oceani AFC27]
 gi|123744359|sp|Q3JCN4|RLMN_NITOC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|76882731|gb|ABA57412.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosococcus oceani ATCC
           19707]
 gi|207090612|gb|EDZ67883.1| radical SAM enzyme, Cfr family [Nitrosococcus oceani AFC27]
          Length = 372

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 161/349 (46%), Positives = 212/349 (60%), Gaps = 19/349 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+ R + DF  M+D+++ +R  L +   I  PEI+ +  S DGT KWLLR 
Sbjct: 28  FRARQVLRWIHQRFVTDFSAMTDLNKSLRERLTESAVISLPEIIKQHRSADGTHKWLLR- 86

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               + G   IETV+IPE  RGTLC+SSQ+GC L CSFC TG Q   RNL   EI+ Q+ 
Sbjct: 87  ----MHGNNCIETVFIPEGDRGTLCISSQIGCILDCSFCATGKQGFNRNLAVSEIIGQLW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           LA   LG  P  E I           I+N+VMMGMGEPL NF+NV  ++++  D      
Sbjct: 143 LANKTLGRDPKGERI-----------ITNVVMMGMGEPLANFNNVVTAMNLMLDDFSYGL 191

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S RR+TLST+G VP + R+     V LA+SLHA ++ LR+ LVP+N+KYPL+ L+ ACR 
Sbjct: 192 SWRRVTLSTAGMVPAMDRLRAVCPVNLAVSLHAPTDKLRDELVPLNKKYPLQDLLSACRR 251

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y      R +TFEYVML G+NDS   A  L+++L+G+PAK+NLIPFNP+ G  Y  SD  
Sbjct: 252 YVAGDRRRAVTFEYVMLAGVNDSLPHARALLRLLRGLPAKVNLIPFNPFSGSVYRRSDAA 311

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
            I  F E + R G  +  R  RG DI AACGQ   L+ R+    R+ M 
Sbjct: 312 TIDRFREELLRGGIMTVTRKTRGDDIAAACGQ---LAGRVQDRTRRTMD 357


>gi|293391771|ref|ZP_06636105.1| cfr family radical SAM enzyme [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952305|gb|EFE02424.1| cfr family radical SAM enzyme [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 379

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 155/363 (42%), Positives = 213/363 (58%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R ++ E   ++G        R  Q+ KWIY  G  +F  M+++++ +R  L
Sbjct: 11  KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKL 66

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 67  KTMAEIKAPEVAVEQRSADGTIKWAMQV------GDQQVETVYIPEADRATLCVSSQVGC 120

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 121 ALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 170

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 171 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 230

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VP+N+KY ++ LID+   Y  +SNA   ++T EYVML  IND    A  L
Sbjct: 231 APNDELRDEIVPLNKKYNIKNLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQL 290

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G +  +R  RG DI AAC
Sbjct: 291 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAAC 350

Query: 363 GQL 365
           GQL
Sbjct: 351 GQL 353


>gi|167893945|ref|ZP_02481347.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           7894]
 gi|167918665|ref|ZP_02505756.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           BCC215]
          Length = 378

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L     I  P+I+ + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R I+N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMERLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLVR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + IR  RG DI AACGQL    K
Sbjct: 317 SKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358


>gi|322515331|ref|ZP_08068328.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976]
 gi|322118707|gb|EFX90919.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976]
          Length = 393

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 155/363 (42%), Positives = 216/363 (59%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++         R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKINLMNLTRQEMRELFAEMD----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++       G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KQIAEIKAPEVSVEQRSSDGTIKWAMQV------GDQQIETVYIPEADRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP    + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPAFDIMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ ++PIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364

Query: 363 GQL 365
           GQL
Sbjct: 365 GQL 367


>gi|158522322|ref|YP_001530192.1| radical SAM protein [Desulfococcus oleovorans Hxd3]
 gi|205829745|sp|A8ZV25|RLMN_DESOH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|158511148|gb|ABW68115.1| radical SAM enzyme, Cfr family [Desulfococcus oleovorans Hxd3]
          Length = 371

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 153/339 (45%), Positives = 207/339 (61%), Gaps = 22/339 (6%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q++KW++V     F  M++IS+ VR LL + F I   +I   + S DGTRK+L    
Sbjct: 49  RADQVFKWLFVHRAESFDQMTNISKPVRTLLAESFIIGRLKIARTQQSADGTRKYLFE-- 106

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              +     IE+V IPE+   TLCVS+QVGC+  C+FC T  +  VRNLT  EI  QVL 
Sbjct: 107 ---LSDGEHIESVLIPEEDHFTLCVSTQVGCAQGCAFCMTAKKGFVRNLTPAEITGQVLG 163

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL-SIASDSMGLSF 212
           A   L              P    +++NIV+MGMGEPL N+DNV  SL +I     GL F
Sbjct: 164 ALKTLA-------------PE--ERLTNIVLMGMGEPLANYDNVITSLDTICDGDCGLQF 208

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S RR+TLSTSG VP +A +G    V LA+SL+A  N  R++L+PIN+ YP+E+L++ACR 
Sbjct: 209 STRRVTLSTSGLVPRMAPLGLATTVNLAVSLNATDNKTRDMLMPINKTYPIEVLLEACRT 268

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           YP LSN R+ITFEY+++ G+NDS +DAL L+K+L+ I AK+NLIPFN   G  +   D  
Sbjct: 269 YP-LSNRRKITFEYILMAGVNDSEKDALRLVKLLRSIKAKVNLIPFNEHEGAAFKRPDDA 327

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
            I  F + +    Y+   R  +G DI AACGQL +  K+
Sbjct: 328 AIERFKQILHDRQYTVMTRQSKGADISAACGQLAADIKK 366


>gi|113868341|ref|YP_726830.1| Fe-S-cluster redox protein [Ralstonia eutropha H16]
 gi|123032871|sp|Q0K959|RLMN_RALEH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|113527117|emb|CAJ93462.1| Predicted Fe-S-cluster redox enzyme [Ralstonia eutropha H16]
          Length = 384

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 147/333 (44%), Positives = 202/333 (60%), Gaps = 12/333 (3%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G   F  MSD+++ +R  L     I  P  + + +S DGTRKWLL  
Sbjct: 27  FRARQLQRWIHHYGASRFDAMSDLAKSLREKLATRAEIRAPAAITDHLSADGTRKWLLD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 86  ----VGQGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLW 141

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   + +  G     G   P   R ISN+VMMGMGEPL N+D V  ++ +  D      
Sbjct: 142 MAEFAMREQLG----RG---PKDDRVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGL 194

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+TLSTSG VP + R+ +++ V LA+SLHA ++ LR++LVP+N+KYPL  L+ ACR 
Sbjct: 195 SRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRR 254

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEY ML G+ND    A  L+K++  +P K NLIPFNP+P      S+  
Sbjct: 255 YLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPESGLKRSNND 314

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F++ +  +G  + IR  RG DI AACGQL
Sbjct: 315 QIRRFAQVLMDAGIVTTIRKTRGDDIDAACGQL 347


>gi|53719145|ref|YP_108131.1| hypothetical protein BPSL1511 [Burkholderia pseudomallei K96243]
 gi|53723553|ref|YP_103007.1| radical SAM protein [Burkholderia mallei ATCC 23344]
 gi|67639886|ref|ZP_00438715.1| radical SAM enzyme, Cfr family [Burkholderia mallei GB8 horse 4]
 gi|76811596|ref|YP_333752.1| radical SAM protein [Burkholderia pseudomallei 1710b]
 gi|121600638|ref|YP_993156.1| radical SAM protein [Burkholderia mallei SAVP1]
 gi|124383540|ref|YP_001026069.1| radical SAM protein [Burkholderia mallei NCTC 10229]
 gi|126440813|ref|YP_001059227.1| radical SAM protein [Burkholderia pseudomallei 668]
 gi|126450494|ref|YP_001080663.1| radical SAM protein [Burkholderia mallei NCTC 10247]
 gi|126453816|ref|YP_001066494.1| radical SAM protein [Burkholderia pseudomallei 1106a]
 gi|134277659|ref|ZP_01764374.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 305]
 gi|167002245|ref|ZP_02268035.1| radical SAM enzyme, Cfr family [Burkholderia mallei PRL-20]
 gi|167738262|ref|ZP_02411036.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           14]
 gi|167815452|ref|ZP_02447132.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           91]
 gi|167845403|ref|ZP_02470911.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           B7210]
 gi|167902394|ref|ZP_02489599.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167910636|ref|ZP_02497727.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           112]
 gi|217421523|ref|ZP_03453027.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 576]
 gi|242316984|ref|ZP_04816000.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106b]
 gi|254177964|ref|ZP_04884619.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 10399]
 gi|254179549|ref|ZP_04886148.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1655]
 gi|254189060|ref|ZP_04895571.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pasteur
           52237]
 gi|254197853|ref|ZP_04904275.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei S13]
 gi|254199953|ref|ZP_04906319.1| radical SAM enzyme, Cfr family [Burkholderia mallei FMH]
 gi|254206286|ref|ZP_04912638.1| radical SAM enzyme, Cfr family [Burkholderia mallei JHU]
 gi|254259301|ref|ZP_04950355.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710a]
 gi|254297426|ref|ZP_04964879.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 406e]
 gi|81379862|sp|Q63UT5|RLMN_BURPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81604959|sp|Q62JW2|RLMN_BURMA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123744447|sp|Q3JRQ1|RLMN_BURP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829680|sp|A3MK77|RLMN_BURM7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829681|sp|A2S2A0|RLMN_BURM9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829682|sp|A1V4K3|RLMN_BURMS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829683|sp|A3NVX3|RLMN_BURP0 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829684|sp|A3NA56|RLMN_BURP6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|52209559|emb|CAH35512.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52426976|gb|AAU47569.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 23344]
 gi|76581049|gb|ABA50524.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710b]
 gi|121229448|gb|ABM51966.1| radical SAM enzyme, Cfr family [Burkholderia mallei SAVP1]
 gi|124291560|gb|ABN00829.1| radical SAM enzyme, Cfr family [Burkholderia mallei NCTC 10229]
 gi|126220306|gb|ABN83812.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 668]
 gi|126227458|gb|ABN90998.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106a]
 gi|126243364|gb|ABO06457.1| radical SAM enzyme, Cfr family [Burkholderia mallei NCTC 10247]
 gi|134251309|gb|EBA51388.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 305]
 gi|147749549|gb|EDK56623.1| radical SAM enzyme, Cfr family [Burkholderia mallei FMH]
 gi|147753729|gb|EDK60794.1| radical SAM enzyme, Cfr family [Burkholderia mallei JHU]
 gi|157807225|gb|EDO84395.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 406e]
 gi|157936739|gb|EDO92409.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pasteur
           52237]
 gi|160699003|gb|EDP88973.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 10399]
 gi|169654594|gb|EDS87287.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei S13]
 gi|184210089|gb|EDU07132.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1655]
 gi|217395265|gb|EEC35283.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 576]
 gi|238520497|gb|EEP83956.1| radical SAM enzyme, Cfr family [Burkholderia mallei GB8 horse 4]
 gi|242140223|gb|EES26625.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106b]
 gi|243062062|gb|EES44248.1| radical SAM enzyme, Cfr family [Burkholderia mallei PRL-20]
 gi|254217990|gb|EET07374.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710a]
          Length = 378

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L     I  P+I+ + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R I+N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLVR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + IR  RG DI AACGQL    K
Sbjct: 317 SKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358


>gi|167836392|ref|ZP_02463275.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
           MSMB43]
          Length = 378

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 145/337 (43%), Positives = 206/337 (61%), Gaps = 16/337 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L     I  P+I+ + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R ++N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+NRK+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNRKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTQAHARELLALTRDVPCKFNLIPFNPFPESGLVR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S  + I  F++ +  +G  + IR  RG DI AACGQL
Sbjct: 317 SKTEQIKRFAQVLIDAGIVTTIRKTRGDDIDAACGQL 353


>gi|254358299|ref|ZP_04974572.1| radical SAM enzyme, Cfr family [Burkholderia mallei 2002721280]
 gi|148027426|gb|EDK85447.1| radical SAM enzyme, Cfr family [Burkholderia mallei 2002721280]
          Length = 378

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L     I  P+I+ + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNADDFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R I+N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLVR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + IR  RG DI AACGQL    K
Sbjct: 317 SKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358


>gi|261868678|ref|YP_003256600.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414010|gb|ACX83381.1| hypothetical protein D11S_2027 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 379

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 155/363 (42%), Positives = 212/363 (58%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R ++ E   ++G        R  Q+ KWIY  G  +F  M+++++ +R  L
Sbjct: 11  KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKL 66

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 67  KTMAEIKAPEVAVEQRSADGTIKWAMQV------GDQQVETVYIPEADRTTLCVSSQVGC 120

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 121 ALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 170

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 171 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 230

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VP+N+KY ++ LID+   Y  +SNA   ++T EYVML  IND    A  L
Sbjct: 231 APNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQL 290

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+P   Y  S    I  F + +   G +  +R  RG DI AAC
Sbjct: 291 AAVLKNTPCKINLIPWNPFPQAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAAC 350

Query: 363 GQL 365
           GQL
Sbjct: 351 GQL 353


>gi|293415781|ref|ZP_06658424.1| cfr family radical SAM enzyme [Escherichia coli B185]
 gi|291433429|gb|EFF06408.1| cfr family radical SAM enzyme [Escherichia coli B185]
          Length = 384

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EMAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+ G  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFLGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|332639899|pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
           With S- Adenosylmethionine
 gi|332639900|pdb|3RFA|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
           With S- Adenosylmethionine
          Length = 404

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AA G
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAXG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|145634639|ref|ZP_01790348.1| hypothetical protein CGSHiAA_05421 [Haemophilus influenzae PittAA]
 gi|229844547|ref|ZP_04464687.1| hypothetical protein CGSHi6P18H1_09535 [Haemophilus influenzae
           6P18H1]
 gi|145268184|gb|EDK08179.1| hypothetical protein CGSHiAA_05421 [Haemophilus influenzae PittAA]
 gi|229812796|gb|EEP48485.1| hypothetical protein CGSHi6P18H1_09535 [Haemophilus influenzae
           6P18H1]
          Length = 383

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 156/363 (42%), Positives = 214/363 (58%), Gaps = 22/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KVVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 294 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353

Query: 363 GQL 365
           GQL
Sbjct: 354 GQL 356


>gi|167719265|ref|ZP_02402501.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           DM98]
          Length = 378

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L     I  P+I+ + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R I+N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLVR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + IR  RG DI AACGQL    K
Sbjct: 317 SKTEQIKRFAQILIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358


>gi|238912645|ref|ZP_04656482.1| hypothetical protein SentesTe_16142 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 388

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 162/384 (42%), Positives = 219/384 (57%), Gaps = 23/384 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +N   K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +
Sbjct: 16  LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSS
Sbjct: 72  RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSS 125

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPIT 175

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G  I V LA
Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGYMIDVALA 235

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298
           ISLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    
Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI
Sbjct: 296 AHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDI 355

Query: 359 LAACGQLK-SLSKRIPKVPRQEMQ 381
            AACGQL   +  R  +  R+ MQ
Sbjct: 356 DAACGQLAGDVIDRTKRTLRKRMQ 379


>gi|322831763|ref|YP_004211790.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602]
 gi|321166964|gb|ADW72663.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602]
          Length = 399

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 157/362 (43%), Positives = 214/362 (59%), Gaps = 22/362 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E  + +G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRKQMREFFINMG----EKPFRADQVMKWMYHYCSDDFEQMTDINKALREKLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+  E+ S DGT KW ++     +GG + +ETVYIP+  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVASEQRSTDGTIKWAIQ-----VGGQL-VETVYIPDGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 141 LECTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVAGT------RPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++ +R+ +VPINRKY ++  + A   Y   SNA   R+T EYVML  IND    A  L 
Sbjct: 251 PNDAIRDEIVPINRKYNIDTFLAAVERYISKSNANQGRVTIEYVMLDHINDGTEHAHELA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G++  +R  RG DI AACG
Sbjct: 311 ERLKNTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTVIVRKTRGDDIDAACG 370

Query: 364 QL 365
           QL
Sbjct: 371 QL 372


>gi|148244511|ref|YP_001219205.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA]
 gi|205829924|sp|A5CX33|RLMN_VESOH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146326338|dbj|BAF61481.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA]
          Length = 356

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 153/363 (42%), Positives = 215/363 (59%), Gaps = 24/363 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K++L+ + ++ L +  + +G  ++H R  T QI +WIY     DF  M + S+ +R  
Sbjct: 1   MNKQNLLSLNQDALNDFFVCLG--EKHYR--TKQIMQWIYKVHEFDFDKMFNFSKSLREE 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           LN+   I +P++V +K + D   KW+L      +     IE VYIPEK RGTLC+SSQVG
Sbjct: 57  LNKIACIEFPKVVKQKFALDKVIKWVL-----ALSEDNYIEMVYIPEKDRGTLCISSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C+FC TG Q   +NLT  EI+ QVL+A   L               S  ++ISNIV
Sbjct: 112 CALACTFCSTGMQGFNKNLTTAEIIAQVLIANKYLN--------------SKTKRISNIV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N   V  +  +  D +    S+R++T+STSG VP+I R+ +   V LAISL
Sbjct: 158 FMGMGEPLLNEQAVYNACDLLLDDLAFGLSRRKVTISTSGIVPSILRMSKRTPVSLAISL 217

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNL 302
           HA +N LR+ LVP+N+KY +E L+ AC+ Y    +  R I FEYVMLK +NDS   A  L
Sbjct: 218 HAPNNQLRDKLVPVNQKYSIEELLKACKVYLNAGTQERHILFEYVMLKDVNDSTEHANKL 277

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+LK I AK+NLIPFN +   +Y  S+ + I  F + + + G  + +R  RG DI  AC
Sbjct: 278 AKLLKAISAKVNLIPFNSFERTQYQSSNAQTIEKFQDILYQQGIRTMMRRTRGEDIDGAC 337

Query: 363 GQL 365
           GQL
Sbjct: 338 GQL 340


>gi|117619957|ref|YP_856292.1| hypothetical protein AHA_1756 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|205829708|sp|A0KJ41|RLMN_AERHH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|117561364|gb|ABK38312.1| radical SAM enzyme, Cfr family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 367

 Score =  278 bits (712), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 161/382 (42%), Positives = 218/382 (57%), Gaps = 28/382 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+ +    +++G        R  Q+ KWIY  G  DF  M+++++ +R  L 
Sbjct: 5   KTNLLDLDRDAMRAFFVELG----EKPFRADQVMKWIYHFGCDDFDQMNNVNKVLRERLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+  E+ S DGT KW L+     +GG  E+ETVYIPE+ R TLCVSSQVGC+
Sbjct: 61  AIAEIRAPEVSREQRSSDGTIKWALQ-----VGGQ-EVETVYIPEEDRATLCVSSQVGCA 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G                 R I+N+VMM
Sbjct: 115 LECKFCSTAQQGFNRNLKVSEIIGQVWRAAKIVGG---------------KRPITNVVMM 159

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ +  D  G   SKRR+T+STSG VP +  +G++I V LAISLHA
Sbjct: 160 GMGEPLLNLANVVPAMRLMMDDFGYGISKRRVTISTSGVVPALDMLGDQIDVALAISLHA 219

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++ LR+ ++PIN KY +E  +   R Y G SNA   R+T EYV+L  IND  + A  L 
Sbjct: 220 PNDKLRSEIMPINDKYNIEEFLAGVRRYLGKSNANGGRVTVEYVLLDHINDDMQHAHELA 279

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LK  P+KINLIPFNP+PG  Y       I  FS+ +   G++  +R  RG DI AACG
Sbjct: 280 KVLKDTPSKINLIPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACG 339

Query: 364 QL-KSLSKRIPKVPRQEMQITG 384
           QL   +  R  +  +  MQ  G
Sbjct: 340 QLVGEVIDRTKRTMKNRMQQDG 361


>gi|309782324|ref|ZP_07677051.1| radical SAM enzyme, Cfr family [Ralstonia sp. 5_7_47FAA]
 gi|308918942|gb|EFP64612.1| radical SAM enzyme, Cfr family [Ralstonia sp. 5_7_47FAA]
          Length = 383

 Score =  278 bits (712), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 145/337 (43%), Positives = 206/337 (61%), Gaps = 20/337 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G  DF  M+D+++ +R  L    +I  P ++ + +S DGTRKWL+  
Sbjct: 27  FRAKQLQRWIHQSGASDFGEMTDLAKSLREKLATRANIQAPAVITDHLSSDGTRKWLVD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 86  ----VGQGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLW 141

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R  LG  P  +           R I+N+VMMGMGEPL N+D V  +L++  D  
Sbjct: 142 MAEFAMRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPALALMLDDN 190

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+T+STSG VP + R+  ++ V LA+SLHA ++ LR++LVP+N+KYPL  L+ 
Sbjct: 191 AYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHASNDALRDVLVPLNKKYPLAELMA 250

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC  Y   +    ITFEY ML G+ND+   A  L++++  +P K NLIPFNP+P      
Sbjct: 251 ACCRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVVADVPCKFNLIPFNPFPESGLKR 310

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S+ + I  FS+ +  +G  + IR  RG DI AACGQL
Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347


>gi|237807659|ref|YP_002892099.1| ribosomal RNA large subunit methyltransferase N [Tolumonas auensis
           DSM 9187]
 gi|259491997|sp|C4LC34|RLMN_TOLAT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|237499920|gb|ACQ92513.1| radical SAM enzyme, Cfr family [Tolumonas auensis DSM 9187]
          Length = 373

 Score =  278 bits (712), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 158/357 (44%), Positives = 210/357 (58%), Gaps = 22/357 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI KWIY  G  DF  M+++++ +R  L +   I  PEI  E+ S DGT KW +R 
Sbjct: 29  FRADQIMKWIYHFGCDDFSQMTNVNKALREKLARIAEIRAPEISTEQRSSDGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  E+ETVYIPE  R TLCVSSQVGC+L C FC TG Q   RNLT  EI+ QV 
Sbjct: 89  ------GDQEVETVYIPEADRATLCVSSQVGCALECKFCSTGQQGFNRNLTVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A  ++G FP           +  R I+N+VMMGMGEPL N  N+  +LS+  +  G   
Sbjct: 143 RAAQVVG-FPK---------DTGKRVITNVVMMGMGEPLLNLSNLVPALSLMMEDFGFGL 192

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           SKRR+T+STSG VP + ++G+ I V LAISLHA ++ LR+ ++PIN KY ++  + + + 
Sbjct: 193 SKRRVTVSTSGVVPALDKLGDMIDVALAISLHAPNDKLRSEIMPINDKYNIQEFLGSVQR 252

Query: 273 YPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           Y   SNA   R+T EYV+L  +ND    A  L ++LK  P+KINLIPFNP+P   Y    
Sbjct: 253 YLSKSNANHGRVTVEYVLLDHVNDDMEHARELAELLKDTPSKINLIPFNPFPSNPYGKPS 312

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK----SLSKRIPKVPRQEMQIT 383
              +  FS+ +   GY+  +R  RG DI AACGQL       +KR  K   QE +I+
Sbjct: 313 NSRVDRFSKVLMEYGYTVIVRKTRGDDIDAACGQLVGDVIDRTKRTMKKRMQEQEIS 369


>gi|95929456|ref|ZP_01312199.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
 gi|95134572|gb|EAT16228.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
          Length = 342

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 160/366 (43%), Positives = 218/366 (59%), Gaps = 34/366 (9%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  L     +EL E L  +G      R R  Q+ +WIY RG+ D   M+D+S+ +R  
Sbjct: 1   MEKLDLKNFSPDELLEFLSGMG----KERFRCEQLLRWIYKRGVTDLDEMTDLSKTLRAE 56

Query: 64  LNQ--HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSS 120
           L +  + S   PE+V+   S DGTRK+L R     +     IETV IP +  R TLC+SS
Sbjct: 57  LKEKSYISDWQPEVVE--TSADGTRKYLFR-----LDDGQSIETVRIPMDNDRSTLCISS 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C FC TG+   +RNLTA EI+ QV                EG         I+
Sbjct: 110 QVGCAMDCDFCVTGSFGFIRNLTAAEIVNQVCAVAK-----------EG--------SIN 150

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIV+MGMGEPL N DNV ++L I   + G  +S R++TLST G VP +  +GE I V LA
Sbjct: 151 NIVLMGMGEPLHNLDNVVRALKIFYAAAGFDYSSRKVTLSTCGLVPQMKELGERIVVNLA 210

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SL+A +N++R+ L+PINR+YPLE L+DACR +P +++ RRITFEY++++ +NDS  DA 
Sbjct: 211 VSLNATTNEVRDKLMPINRRYPLEELMDACRRFP-MASHRRITFEYILIRDLNDSLADAK 269

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+K++ GI  KINLIPFN   G  Y C DQ  I  F   +      +  R  +G DI A
Sbjct: 270 RLVKLMHGIRGKINLIPFNEHEGSPYRCPDQATIEAFQTYLLNRDIVAIRRASKGQDISA 329

Query: 361 ACGQLK 366
           ACGQLK
Sbjct: 330 ACGQLK 335


>gi|167569729|ref|ZP_02362603.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis
           C6786]
          Length = 378

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 206/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L     I  P+I+ + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGSGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R I+N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGREPGPNG-------RADRVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + ++G E+ V LA+SLHA ++ LR+ LVP+NRK+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDKLGAELPVALAVSLHAPNDALRDELVPLNRKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALTRDVPCKFNLIPFNPFPESGLVR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S    I  F++ +  +G  + IR  RG DI AACGQL    K
Sbjct: 317 SKPDQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358


>gi|15616897|ref|NP_240110.1| hypothetical protein BU286 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681651|ref|YP_002468037.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|257471340|ref|ZP_05635339.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           LSR1 (Acyrthosiphon pisum)]
 gi|11387286|sp|P57373|RLMN_BUCAI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|25320166|pir||D84963 hypothetical protein [imported] - Buchnera sp. (strain APS)
 gi|10038961|dbj|BAB12996.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219624494|gb|ACL30649.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
          Length = 363

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 157/364 (43%), Positives = 213/364 (58%), Gaps = 24/364 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+ + R+ L+  L+ +G         T Q+  WIY     DF  M +IS + R  
Sbjct: 12  ISKINLLDLNRQNLKYFLISLGAKN----FCTEQVMSWIYNYYCDDFNKMLNISIKTRKK 67

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +   I   E ++EKIS DGT KW+     +      +IETVY+PEK R TLCVSSQ+G
Sbjct: 68  LYEKSYIFASEFIEEKISYDGTIKWITDINNQ------KIETVYMPEKKRSTLCVSSQIG 121

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL C FC TG +   RNL   EI+ Q+  A   L +             ++ + I+NIV
Sbjct: 122 CSLKCHFCATGQEGFQRNLKVSEIIAQIWQANKRLKE------------KNIKKNITNIV 169

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N  NV  +L+I  D  G   SKRR+TLSTSG VP + ++   I V LAISL
Sbjct: 170 FMGMGEPLLNLKNVVSALTIILDEYGFGLSKRRVTLSTSGIVPALDKLRNMIDVSLAISL 229

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301
           HA ++ +RNI++PINRKY +  ++ +   Y   SNA R  IT EYVML  INDS  +A  
Sbjct: 230 HAPNDFIRNIIMPINRKYNISSVLSSALKYFKYSNANRGGITIEYVMLDRINDSNENARQ 289

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +L  IP+KINLIP+N + G  +LCS+   I  F+  +++ G+++ IR  RG DI AA
Sbjct: 290 LSVLLSKIPSKINLIPWNSFSGPSFLCSNTDRINMFANILRKKGFTTTIRKNRGEDINAA 349

Query: 362 CGQL 365
           CGQL
Sbjct: 350 CGQL 353


>gi|213028233|ref|ZP_03342680.1| hypothetical protein Salmonelentericaenterica_40390 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 356

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 156/352 (44%), Positives = 206/352 (58%), Gaps = 19/352 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KW+Y     +F  M+DI++ +R  L +   I  PE+V+E+ S DGT KW +  
Sbjct: 12  FRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV 71

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G   +ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 72  ------GDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 125

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A  ++G       + G       R I+N+VMMGMGEPL N  NV  ++ I  D  G   
Sbjct: 126 RAAKIVG----AAKVTGQ------RPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGL 175

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           SKRR+TLSTSG VP + ++G+ I V LAISLHA ++ +R+ +VPIN+KY +E  + A R 
Sbjct: 176 SKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRR 235

Query: 273 YPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           Y   SNA   R+T EYVML  +ND    A  L ++LK  P KINLIP+NP+PG  Y  S 
Sbjct: 236 YLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKETPCKINLIPWNPFPGAPYGRSS 295

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK-SLSKRIPKVPRQEMQ 381
              I  FS+ +   G+++ +R  RG DI AACGQL   +  R  +  R+ MQ
Sbjct: 296 NSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 347


>gi|319779677|ref|YP_004130590.1| Ribosomal RNA large subunit methyltransferase N [Taylorella
           equigenitalis MCE9]
 gi|317109701|gb|ADU92447.1| Ribosomal RNA large subunit methyltransferase N [Taylorella
           equigenitalis MCE9]
          Length = 378

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 151/365 (41%), Positives = 217/365 (59%), Gaps = 14/365 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  L+K++LIG+    L E + K G    H   R  Q+  WI+ +G  +F  M++++ + 
Sbjct: 1   MTILEKQNLIGLDYTVLTELVAKWG----HKPFRAKQLMNWIHQKGESNFSNMTNLANDF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  P+ + +++S DGT KWL       +     IETV+IPE  RGTLC+SS
Sbjct: 57  RKNLAEFAEISVPKELTKQVSTDGTTKWLFD-----VQNNNAIETVFIPEDDRGTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNLT  EI+ QV LAR  +       DI+ +  P   R IS
Sbjct: 112 QAGCTVACRFCSTGHQGFNRNLTTSEIIGQVWLARKEI--LNSSTDIQKL--PG-DRVIS 166

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V MGMGEPL N+D V  ++ +  D      S+RR+T+STSG +P + ++ ++  V LA
Sbjct: 167 NVVFMGMGEPLLNYDQVLPAVKMLVDQNAYGLSRRRVTVSTSGVIPFMDKLSQDCPVALA 226

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LRN L+P+N+KYPL+ LIDAC  Y   +    ITFEY+ML+ +ND+   A 
Sbjct: 227 VSLHAPNDALRNQLIPLNKKYPLKELIDACNRYIEFAPRDFITFEYIMLEDVNDTDIHAN 286

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI+I + + +K+NLIPFNP+P      S  + +  FS  +  +G  +  R  RG DI A
Sbjct: 287 QLIEICREVKSKVNLIPFNPFPESGLKRSSSQRVKAFSAILNDAGIVATTRKTRGDDIDA 346

Query: 361 ACGQL 365
           ACGQL
Sbjct: 347 ACGQL 351


>gi|320353873|ref|YP_004195212.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
           DSM 2032]
 gi|320122375|gb|ADW17921.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
           DSM 2032]
          Length = 371

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 156/361 (43%), Positives = 218/361 (60%), Gaps = 23/361 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK  L  + +E+L   +  +G P      R  QI  WIY  GI DF  M+D+++E R +L
Sbjct: 6   KKTDLKNLTQEQLVRFVESLGQPA----FRGRQILAWIYRPGIIDFTQMTDLAKEFRAIL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q  S       D  + C  +R   ++F  R   G + IE+V IPE+ R TLCVSSQVGC
Sbjct: 62  TQ--SAFMSRFDDCMVEC--SRDGAVKFAFRLDDGQI-IESVLIPEEDRNTLCVSSQVGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ CSFC TG     RNLT  EI+ QV   R    D+    D +G+        ++NIV 
Sbjct: 117 AMGCSFCLTGAMGFCRNLTTAEIVNQVCAVR----DWTLAHD-KGL--------LTNIVF 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDN+  +++I ++  GL FS RRIT+ST G VP + R+GEE  V LA+SLH
Sbjct: 164 MGMGEPLANFDNLLDAIAILTEQRGLDFSNRRITVSTCGLVPQMRRLGEETDVNLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV++++R+ L+P+N++YP+  LI+ CR Y      +RI FEY +L+GINDS  DA+ L +
Sbjct: 224 AVNDEVRSRLMPVNKRYPIAELIEVCRTYRQ-KRRKRIMFEYTLLQGINDSDADAVQLAE 282

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ +P KINL+  NP  G  Y    ++ ++ F   ++  GY+  IRT RG DI AACGQ
Sbjct: 283 LLREVPCKINLLAVNPGSGSAYQSPGEERVLCFQRILRDRGYTVFIRTSRGEDISAACGQ 342

Query: 365 L 365
           L
Sbjct: 343 L 343


>gi|219682208|ref|YP_002468592.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|219621941|gb|ACL30097.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|311086023|gb|ADP66105.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           LL01 (Acyrthosiphon pisum)]
 gi|311086597|gb|ADP66678.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           TLW03 (Acyrthosiphon pisum)]
 gi|311087180|gb|ADP67260.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           JF99 (Acyrthosiphon pisum)]
 gi|311087708|gb|ADP67787.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           JF98 (Acyrthosiphon pisum)]
          Length = 363

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 157/364 (43%), Positives = 212/364 (58%), Gaps = 24/364 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+ + R+ L+  L+ +G         T Q+  WIY     DF  M +IS + R  
Sbjct: 12  ISKINLLDLNRQNLKYFLISLGAKN----FCTEQVMSWIYNYYCDDFNKMLNISIKTRKK 67

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +   I   E ++EKIS DGT KW+     +      +IETVY+PEK R TLCVSSQ+G
Sbjct: 68  LYEKSYIFASEFIEEKISYDGTIKWITDINNQ------KIETVYMPEKKRSTLCVSSQIG 121

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL C FC TG +   RNL   EI+ Q+  A   L +             ++ + I+NIV
Sbjct: 122 CSLKCHFCATGQEGFQRNLKVSEIIAQIWQANKRLKE------------KNIKKNITNIV 169

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N  NV  +L+I  D  G   SKRR+TLSTSG VP + ++   I V LAISL
Sbjct: 170 FMGMGEPLLNLKNVVSALTIILDEYGFGLSKRRVTLSTSGIVPALDKLRNMIDVSLAISL 229

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301
           HA ++ +RNI++PINRKY +  ++ +   Y   SNA R  IT EYVML  INDS   A  
Sbjct: 230 HAPNDFIRNIIMPINRKYNISSVLSSALKYFKYSNANRGGITIEYVMLDRINDSNEHARQ 289

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +L  IP+KINLIP+N + G  +LCS+   I  F+  +++ G+++ IR  RG DI AA
Sbjct: 290 LSVLLSKIPSKINLIPWNSFSGPSFLCSNTDRINMFANILRKKGFTTTIRKNRGEDINAA 349

Query: 362 CGQL 365
           CGQL
Sbjct: 350 CGQL 353


>gi|171463401|ref|YP_001797514.1| radical SAM enzyme, Cfr family [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192939|gb|ACB43900.1| radical SAM enzyme, Cfr family [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 383

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/338 (43%), Positives = 205/338 (60%), Gaps = 11/338 (3%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+ RG+ D   MSD+++  R  L     ++   ++ ++ + DGTRKWLL  
Sbjct: 13  FRAKQLMQWIHQRGVSDINHMSDLAKSFRATLLDKTEVLSLPVIKDEHALDGTRKWLLD- 71

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +E+V+IPE  RGTLC+SSQ GC++ C FC TG Q   RNLT+ EI+ Q+ 
Sbjct: 72  ----VGAGNAVESVFIPEDDRGTLCISSQAGCAVNCRFCSTGHQGFARNLTSGEIIGQLW 127

Query: 153 LARSLLGDFPG--CEDIEGMVIPS---VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
            A  LL + P   C  IE  + P     GR ISN+VMMGMGEPL N+DNV  +L +  D 
Sbjct: 128 FAEHLLRNDPEAVCR-IEKFLTPGWEHTGRVISNVVMMGMGEPLLNYDNVVSALRLMLDD 186

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
                S+RR+T+STSG VP I R+ ++  V LA+SLHA ++ LR+ LVP+N+KY L  L+
Sbjct: 187 RAYGLSRRRVTVSTSGVVPMIDRLAQDCPVALAVSLHAPNDALRDQLVPLNQKYLLRELL 246

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
           DAC  Y   +    +TFEY ML  +NDS   A  L+++L+ I  KINLIPFNP+P     
Sbjct: 247 DACERYLPFAPRDFLTFEYCMLDSVNDSDIQAKELVRLLRNIKCKINLIPFNPFPESGLK 306

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            S  + +  F+  +  +G  + +R  RG DI AACGQL
Sbjct: 307 RSPAQRVNAFAGILLDAGMVATVRKTRGDDIAAACGQL 344


>gi|254480238|ref|ZP_05093486.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
           HTCC2148]
 gi|214039800|gb|EEB80459.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
           HTCC2148]
          Length = 391

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 154/363 (42%), Positives = 216/363 (59%), Gaps = 21/363 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+G+    +E+  L++G      + R  Q+ KWI+  G+ D   MS++ + +R  L
Sbjct: 17  EKVNLLGLPLAAMEQYFLELG----EKKFRAQQVLKWIHHHGVTDIDEMSNLGKVLREKL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PEIV +  S DGTRKW +R      GG + +E V IP+  R TLCVSSQVGC
Sbjct: 73  KSVAEIKPPEIVSQHDSNDGTRKWAIRVE----GGGL-VEAVLIPDGKRATLCVSSQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q   R+L+A EI+ QV LA      F   +          GR ++N+VM
Sbjct: 128 SLDCSFCSTGKQGFQRDLSAAEIIGQVWLAIKSYDAFQSAK----------GRIVTNVVM 177

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++ +  +      SKRR+TLSTSG VP + ++ +   V LA+SLH
Sbjct: 178 MGMGEPLLNFDNVVAAMDLMMEDNAYGISKRRVTLSTSGVVPALDKLAKVSEVSLAVSLH 237

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARR-ITFEYVMLKGINDSPRDALNL 302
           A ++ LR+ LVPINRKYP+ +L+++ R+Y    S+ +R +T EY ++ G+ND    A  L
Sbjct: 238 APNDALRSELVPINRKYPIAVLLESARNYIDAQSDKKRVVTIEYTLIAGVNDQREHAQEL 297

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LKG P KINLIPFN +   +Y       +  F + +  +GY   +RT RG DI AAC
Sbjct: 298 AQLLKGYPCKINLIPFNTFDQSDYRRPSGNAVSRFWQVLVDAGYIVTVRTTRGDDIDAAC 357

Query: 363 GQL 365
           GQL
Sbjct: 358 GQL 360


>gi|167562546|ref|ZP_02355462.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis
           EO147]
          Length = 378

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 145/342 (42%), Positives = 206/342 (60%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L     I  P+I+ + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGSGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R I+N+VMMGMGEPL N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGREPGPNG-------RADRVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + ++G E+ V LA+SLHA ++ LR+ LVP+N+K+PL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDKLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALTRDVPCKFNLIPFNPFPESGLVR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S    I  F++ +  +G  + IR  RG DI AACGQL    K
Sbjct: 317 SKPDQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358


>gi|254449223|ref|ZP_05062672.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
 gi|198261200|gb|EDY85496.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
          Length = 380

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 146/339 (43%), Positives = 202/339 (59%), Gaps = 18/339 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +Q+ KWI+ R + DF  M+D+S+ +R +L +   +  PE+V E+ S DGTRKW+L  
Sbjct: 29  FRATQVTKWIHHRCVDDFDEMTDLSKSLREMLKRDAEVRAPEVVLEQKSADGTRKWVLDL 88

Query: 93  PARCIGGPV------EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
             +            ++E V+IPE  RGTLCVSSQVGCSL CSFC T  Q   RNL+  E
Sbjct: 89  DNQATASRTTPAIGNKVEMVFIPEDGRGTLCVSSQVGCSLDCSFCSTARQGFSRNLSVAE 148

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
           I+ QV  A+  L +    E            +++N+VMMGMGEPL N+  V ++++   D
Sbjct: 149 IIGQVWQAKRTLLELGEDE------------RLTNVVMMGMGEPLMNYRPVIQAVNTMMD 196

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
            MG   SKR++T+STSG VP + R+ E+    LA+SLHA ++ LR+ LVPIN+K+PL  L
Sbjct: 197 DMGYGLSKRKVTISTSGMVPAMERMIEDTQCALAVSLHAPNDSLRDELVPINKKHPLNEL 256

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           +  C  +      R +T+EYVML+G+ND+   A  L K+LK   AK+NLIPFNP+P   Y
Sbjct: 257 MGVCDRWVEAGPKRNVTYEYVMLEGVNDNREQAHELGKLLKAREAKVNLIPFNPFPNSGY 316

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             S +  I  F   +   G  +  R  RG DI AACGQL
Sbjct: 317 KRSSEARIKEFKRILNSYGVFTFPRKTRGDDIDAACGQL 355


>gi|145299533|ref|YP_001142374.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|205829709|sp|A4SP04|RLMN_AERS4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|142852305|gb|ABO90626.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 368

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 161/382 (42%), Positives = 217/382 (56%), Gaps = 28/382 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+ +    +++G        R  QI KWIY  G  DF  M+++++ +R  L 
Sbjct: 6   KTNLLDLDRDAMRAFFVELG----EKPFRADQIMKWIYHFGCDDFDQMNNVNKVLRERLK 61

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+  E+ S DGT KW L+     +GG  E+ETVYIPE+ R TLCVSSQVGC+
Sbjct: 62  AIAEIRAPEVSREQRSSDGTIKWALQ-----VGGQ-EVETVYIPEEDRATLCVSSQVGCA 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G                 R I+N+VMM
Sbjct: 116 LACKFCSTAQQGFNRNLKVSEIIGQVWRAAKIVGG---------------KRPITNVVMM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ +  D  G   SKRR+T+STSG VP +  +G++I V LAISLHA
Sbjct: 161 GMGEPLLNLANVIPAMRLMMDDFGYGISKRRVTISTSGVVPALDILGDQIDVALAISLHA 220

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++ LR+ ++PIN KY +E  +   R Y   SNA   R+T EYV+L  IND  + A  L 
Sbjct: 221 PNDKLRSEIMPINDKYNIEDFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELA 280

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LK  P+KINLIPFNP+PG  Y       I  FS+ +   G++  +R  RG DI AACG
Sbjct: 281 KVLKDTPSKINLIPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACG 340

Query: 364 QL-KSLSKRIPKVPRQEMQITG 384
           QL   +  R  +  +  MQ  G
Sbjct: 341 QLVGEVIDRTKRTMKNRMQQDG 362


>gi|56476113|ref|YP_157702.1| Fe-S-cluster redox protein [Aromatoleum aromaticum EbN1]
 gi|81358332|sp|Q5P7B0|RLMN_AZOSE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|56312156|emb|CAI06801.1| predicted Fe-S-cluster redox enzyme [Aromatoleum aromaticum EbN1]
          Length = 408

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 153/366 (41%), Positives = 209/366 (57%), Gaps = 38/366 (10%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++  G  DF  M+D+++ +R  L +   I  P  + + +S DGTRKWLL  
Sbjct: 27  FRARQVMRWMHRFGETDFGNMTDVAKSLRAKLAEEACIRAPRAIRDAVSVDGTRKWLLD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +E V+IPE +RGTLC+SSQ GC+L C+FC TG Q   RNL+A EI+ Q+ 
Sbjct: 86  ----VGSANAVEAVFIPETNRGTLCISSQAGCALDCAFCSTGKQGFNRNLSAAEIIGQLW 141

Query: 153 LARSLLG---------DFPG--------------CEDIEGMVIPSV----------GRKI 179
           LA  LLG         D  G                D +G+   S           GR I
Sbjct: 142 LANRLLGGSASPAGSKDGDGGPDHASRATKLDHRAADAKGVQSDSWRSSDPEEDHNGRVI 201

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           SN+VMMGMGEPL NFDNV  +L +  D      S+RR+T+STSG VP + R+ +E  V L
Sbjct: 202 SNVVMMGMGEPLANFDNVVTALRLMLDDHAYGLSRRRVTVSTSGIVPAMDRLRDECPVAL 261

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  + LR+ LVPINRKYPL  L+ AC+ Y   +    +TFEYVML  +NDS   A
Sbjct: 262 AVSLHAPDDALRDRLVPINRKYPLRELMAACQRYLERAPRDFVTFEYVMLDDVNDSDAHA 321

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+++++ +P K NLIPFNP+P   +  S  + I  F+  +  +G  +  R  RG D+ 
Sbjct: 322 RALVELVRDVPCKFNLIPFNPFPNSGFDRSPAERIRRFAAILIDAGIVTTTRKTRGDDVN 381

Query: 360 AACGQL 365
           AACGQL
Sbjct: 382 AACGQL 387


>gi|330830071|ref|YP_004393023.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
           B565]
 gi|328805207|gb|AEB50406.1| Ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
           B565]
          Length = 367

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 159/382 (41%), Positives = 215/382 (56%), Gaps = 28/382 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+ +    +++G        R  Q+ KWIY  G  DF  M+++++ ++  L 
Sbjct: 5   KINLLDLDRDAMRAFFVELG----EKPFRADQVMKWIYHFGCDDFDQMTNVNKVLKERLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PEI  E+ S DGT KW L+       G  E+ETVYIPE  R TLCVSSQVGC+
Sbjct: 61  AIAEIKAPEISREQRSADGTIKWALQV------GDQEVETVYIPEDDRATLCVSSQVGCA 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G                 R I+N+VMM
Sbjct: 115 LECKFCSTAQQGFNRNLKVSEIIGQVWRAARVVGG---------------KRPITNVVMM 159

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ +  D  G   SKRR+T+STSG VP + ++G++I V LAISLHA
Sbjct: 160 GMGEPLLNLANVVPAMRLMMDDYGFGISKRRVTISTSGVVPALDKLGDQIDVALAISLHA 219

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++ LR+ ++PIN KY +E  +   R Y   SNA   R+T EYV+L  IND  + A  L 
Sbjct: 220 PNDKLRSEIMPINDKYNIEEFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELA 279

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LK  P+KINLIPFNP+PG  Y       I  FS+ +   G++  +R  RG DI AACG
Sbjct: 280 KVLKDTPSKINLIPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACG 339

Query: 364 QL-KSLSKRIPKVPRQEMQITG 384
           QL   +  R  +  +  MQ  G
Sbjct: 340 QLVGDVIDRTKRTIKNRMQQDG 361


>gi|269468799|gb|EEZ80403.1| hypothetical protein Sup05_0839 [uncultured SUP05 cluster
           bacterium]
          Length = 358

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 160/375 (42%), Positives = 219/375 (58%), Gaps = 26/375 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L G+ + EL+    K+G        RT Q  KWIY +   DF  M ++S+E+R  L 
Sbjct: 4   KQNLFGLSQSELDTFFSKLG----EKPYRTKQFMKWIYHQHEFDFNQMLNLSKELRQKLL 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q  ++  P+I  +  + DG  KWL+      +G    IE VYIPEK RGTLC+SSQVGCS
Sbjct: 60  QVATLELPKISSQNFASDGLIKWLID-----LGSDNHIEMVYIPEKDRGTLCISSQVGCS 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLT  EI+ Q+++A   L                  +KISN+V M
Sbjct: 115 LACTFCSTGMQGFNRNLTTAEIIAQIIIANEHLS--------------HENKKISNVVFM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  +V  +  +  D +    S+R++T+STSG VP + R+ +   V LAISLHA
Sbjct: 161 GMGEPLLNEKSVYSACDLLLDDLAFGLSRRKVTISTSGVVPALYRMAQTTPVSLAISLHA 220

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304
             ++LR+ LVPIN+KYP+E L+ AC++Y    +  R I FEYVML G+ND+   A  L K
Sbjct: 221 PDDELRDELVPINQKYPIEELMAACKNYLTSGTQERHILFEYVMLDGVNDTMEHAKKLAK 280

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+GI AK+NLIPFNP+P  +Y  S    I  F + + ++G  +  R  RG D+  ACGQ
Sbjct: 281 LLRGISAKVNLIPFNPFPKTQYKTSKAFTIKQFQDVLFQAGIRTMTRRTRGEDVDGACGQ 340

Query: 365 LKSLSKRIPKVPRQE 379
           L    K I K  R E
Sbjct: 341 LA--GKVIDKTRRTE 353


>gi|134094488|ref|YP_001099563.1| hypothetical protein HEAR1261 [Herminiimonas arsenicoxydans]
 gi|205829776|sp|A4G4J9|RLMN_HERAR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|133738391|emb|CAL61436.1| putative Fe-S-cluster redox enzyme [Herminiimonas arsenicoxydans]
          Length = 386

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 140/333 (42%), Positives = 202/333 (60%), Gaps = 10/333 (3%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G  DF  M+D+++ +R  L     I  P ++ +  S DGTRKWL+  
Sbjct: 28  FRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLKTRAMIAAPAVISDHTSSDGTRKWLID- 86

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLC+S+Q GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 87  ----VGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTGKQGFNRNLSVGEIIGQLW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   L    G E       P   R+I+N+VMMGMGEPL N++    +L +  D      
Sbjct: 143 MAEFELRRTKGIEPG-----PKGERQITNVVMMGMGEPLLNYEPTVTALKLMLDDNAYGL 197

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+TLSTSG VP I ++ ++  V LA+SLHA ++ LR+ LVP+N+KYPL+ L+ AC+ 
Sbjct: 198 SRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPLNKKYPLQELMAACKR 257

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    +TFEY ML G+NDS + A  L+ +++ +P K NLIPFNP+P      S+  
Sbjct: 258 YLEFAPRDFVTFEYCMLDGVNDSDQHARELLTLVRDVPCKFNLIPFNPFPESGLTRSNNP 317

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F++ +   G  + IR  RG DI AACGQL
Sbjct: 318 RIKAFAQVLMDGGLVTTIRKTRGDDIDAACGQL 350


>gi|90408602|ref|ZP_01216757.1| hypothetical protein PCNPT3_04766 [Psychromonas sp. CNPT3]
 gi|90310294|gb|EAS38424.1| hypothetical protein PCNPT3_04766 [Psychromonas sp. CNPT3]
          Length = 372

 Score =  275 bits (704), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 155/364 (42%), Positives = 213/364 (58%), Gaps = 22/364 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KK +L+ + RE L    + +G        R  Q+ KWIY  G  DF  MS+I++++R  
Sbjct: 3   IKKVNLLNLNREGLRAFFVDMG----EKAFRAEQVMKWIYHYGCDDFSEMSNINKKLREK 58

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L     I+ PE+  E+ S DGT KW+++       G  +IETVYIPEK R TLCVSSQVG
Sbjct: 59  LTLCAEIVAPEVRVEQRSKDGTIKWVMKV------GDQDIETVYIPEKDRATLCVSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C+FC T  Q   RNLT  EI+ QV  A  ++G          ++  S  R I+N+V
Sbjct: 113 CALACNFCSTAQQGFNRNLTVSEIIGQVWRAAKIVG----------VMGESGKRPITNVV 162

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N +NV  ++ +  D  G + SKRR+T+STSG VP +  +G+ I V LAISL
Sbjct: 163 MMGMGEPLLNLNNVIPAMELMLDDFGYALSKRRVTISTSGVVPALDILGDRIDVALAISL 222

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301
           HA +++LR+ ++PIN KY +   +   + Y   S A R  +T EY++L   NDS   A  
Sbjct: 223 HASNDELRSQMMPINDKYNIADFLAGVKRYIAKSKANRGKVTIEYLLLDHFNDSTDQAHE 282

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LK  P KINLIPFNP+P   Y       +  F++ +   GY+  +R  RG DI AA
Sbjct: 283 LAILLKDTPCKINLIPFNPFPDNSYKKPSNSRVDRFNKVLMEYGYTVIVRKTRGDDIDAA 342

Query: 362 CGQL 365
           CGQL
Sbjct: 343 CGQL 346


>gi|325294881|ref|YP_004281395.1| ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065329|gb|ADY73336.1| Ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 345

 Score =  275 bits (704), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 147/357 (41%), Positives = 214/357 (59%), Gaps = 26/357 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL+  +  +G        R  QI +WIY + ++ F  M++IS+  R +L+++  I   +
Sbjct: 10  EELQNFVQSLGFEN----YRAKQIAQWIYKKRVKSFDEMTNISKAARKVLSENAKIDVLK 65

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
           +V  + S DGT+K+L       +     +E+V+IPEK   TLCVS+QVGC + C FC T 
Sbjct: 66  LVKVEKSMDGTKKYLFE-----LEDGNRVESVFIPEKDWNTLCVSTQVGCPVGCKFCLTA 120

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
                RNLTA EI+ Q +  +  +G+                ++ISN+V MGMGEP  NF
Sbjct: 121 KDGFTRNLTAAEIVDQYIHVQRDVGE---------------DKRISNVVFMGMGEPFLNF 165

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNI 253
           +NVKK++ I +D   L  S R+IT+ST G VP I R+ +E+  V LAISLHA ++++R  
Sbjct: 166 ENVKKAVEIMTDKNMLDLSTRKITISTVGVVPGIDRMAKEMNKVKLAISLHATTDEVREK 225

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           +VP+NRKYP+  ++ A R YP   N RRI  EYVML+G+NDS  DA  L+K++KGIP K+
Sbjct: 226 IVPLNRKYPISEIMAALRRYPA-DNIRRIMIEYVMLEGVNDSVEDAKRLVKLVKGIPVKV 284

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           NLIPFN +PG  +  S ++    F + +     ++ IR  RG DI AACG L++  K
Sbjct: 285 NLIPFNSYPGAPFKPSSKEQTEKFQKVLWDHNIAAFIRDSRGQDISAACGMLRTKEK 341


>gi|319943743|ref|ZP_08018024.1| cfr family radical SAM enzyme [Lautropia mirabilis ATCC 51599]
 gi|319742976|gb|EFV95382.1| cfr family radical SAM enzyme [Lautropia mirabilis ATCC 51599]
          Length = 460

 Score =  275 bits (704), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 150/343 (43%), Positives = 203/343 (59%), Gaps = 15/343 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++ RG+ D+  M+D+++  R  L     I  P ++ +  + D TRKWL   
Sbjct: 86  FRAHQLMRWVHQRGVADWSAMTDLARSFRERLQDKALIQAPSVLKDHTAPDATRKWLFD- 144

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +E V+IPE  RGTLCVSSQ GC++ CSFC TG Q   RNL   EIL Q+ 
Sbjct: 145 ----VGAGNAVEAVFIPEARRGTLCVSSQAGCAVNCSFCSTGKQGFSRNLNTAEILGQIW 200

Query: 153 LARSLL---GDFP---GCEDI----EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202
           LA  LL   G  P   G +D+    E +      R ISNIV MGMGEPL N++ +  +L 
Sbjct: 201 LANQLLRQPGAQPRWGGADDMAQLDEDVDDAGALRPISNIVFMGMGEPLLNYNALLPALR 260

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP 262
              D  G   S+RR+T+STSG VP I R+ E+  V LA+SLHA ++ LR+ LVP+NRKYP
Sbjct: 261 ALLDDHGYGLSRRRVTVSTSGVVPLIDRLSEDCPVALAVSLHASNDTLRDQLVPLNRKYP 320

Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322
           L+ L+ AC+ Y  ++    ITFEYVMLK INDS   A  L  ++  +P K NLIPFNP+P
Sbjct: 321 LKELLAACQRYLKVAPRDFITFEYVMLKDINDSVAHARELAALVADVPCKFNLIPFNPFP 380

Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                 S  + I  F + + R+G  + +R  RG +I AACGQL
Sbjct: 381 NSGLSRSSDRTIRQFGDVLLRAGIVTTVRRTRGDEIDAACGQL 423


>gi|312973242|ref|ZP_07787414.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
 gi|310331837|gb|EFP99072.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
          Length = 339

 Score =  275 bits (704), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 154/345 (44%), Positives = 205/345 (59%), Gaps = 19/345 (5%)

Query: 40  KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG 99
           KW+Y     +F  M+DI++ +R  L +   I  PE+V+E+ S DGT KW +        G
Sbjct: 2   KWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------G 55

Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159
              +ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV  A  ++G
Sbjct: 56  DQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG 115

Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
                  + G       R I+N+VMMGMGEPL N +NV  ++ I  D  G   SKRR+TL
Sbjct: 116 ----AAKVTGQ------RPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTL 165

Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           STSG VP + ++G+ I V LAISLHA ++++R+ +VPIN+KY +E  + A R Y   SNA
Sbjct: 166 STSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNA 225

Query: 280 R--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
              R+T EYVML  +ND    A  L ++LK  P KINLIP+NP+PG  Y  S    I  F
Sbjct: 226 NQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRF 285

Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLK-SLSKRIPKVPRQEMQ 381
           S+ +   G+++ +R  RG DI AACGQL   +  R  +  R+ MQ
Sbjct: 286 SKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 330


>gi|221066031|ref|ZP_03542136.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
 gi|220711054|gb|EED66422.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
          Length = 373

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 146/339 (43%), Positives = 197/339 (58%), Gaps = 20/339 (5%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ RG  DF  M+D+++ +R  L     I    +V E +S DGT KWL  
Sbjct: 24  RFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAHITALPVVTEHVSADGTVKWLFD 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    +E+V+IPE  RGTLCVSSQ GC++ C FC TG Q   RNL   EIL Q+
Sbjct: 84  -----VGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLDTGEILAQL 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L    G ED          R ISN+VMMGMGEPL N+  +  +L +  D  G  
Sbjct: 139 WYAEHSLRKRFGTED----------RIISNVVMMGMGEPLQNYSALVPALRVMLDDHGYG 188

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP + R+ ++  V LA+SLHA ++ LR+ LVP+NRKYP+  L+DAC 
Sbjct: 189 LSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDPLRDNLVPLNRKYPIAELLDACE 248

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPWPGCEY 326
            Y   +    ITFEY ML G+ND P  A  LI++++         K NLIPFNP+P    
Sbjct: 249 RYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGKSWCKFNLIPFNPFPASGL 308

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L S    +  F+  +  +G  + +R  RG DI AACGQL
Sbjct: 309 LRSSAARVTEFATMLSNAGIVTTVRKTRGDDIDAACGQL 347


>gi|319763716|ref|YP_004127653.1| radical sam enzyme, cfr family [Alicycliphilus denitrificans BC]
 gi|317118277|gb|ADV00766.1| radical SAM enzyme, Cfr family [Alicycliphilus denitrificans BC]
          Length = 374

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 154/352 (43%), Positives = 207/352 (58%), Gaps = 25/352 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ RG  DF  MSD+++ +R  L     +   + + E  S DGT KWL  
Sbjct: 24  RFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKGCAHVSGLQAISEHASADGTVKWLFD 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +GG   +ETV+IPE  RGTLC+SSQ GC++ C FC TG Q   RNLT  EI+ Q+
Sbjct: 84  -----VGGGNAVETVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQL 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A  +L    G  D E        R ISN+VMMGMGEPL N+  +  +L I  D  G  
Sbjct: 139 WHAEHVLRQRRG--DGE--------RVISNVVMMGMGEPLQNYSALVPALRIMLDDHGYG 188

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP + R+G +  V LA+SLHA +++LR+ LVP+NRKYPL+ L+ ACR
Sbjct: 189 LSRRRVTVSTSGVVPMMDRLGRDCPVALAVSLHAPNDELRDNLVPLNRKYPLQELLAACR 248

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILK------GIPAKINLIPFNPWPG 323
            Y  L +A R  ITFEY ML G+ND P  A  LI ++       G+  K NLIPFNP+P 
Sbjct: 249 RY--LEHAPRDFITFEYCMLDGVNDQPEHARELIALVSRKAADGGVSCKFNLIPFNPFPA 306

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
                S    +  F++ +  +G  + +R  RG DI AACGQL    K   +V
Sbjct: 307 SGLRRSPAAAVSAFAKLLSDAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRV 358


>gi|329912290|ref|ZP_08275720.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545652|gb|EGF30807.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 388

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 146/353 (41%), Positives = 211/353 (59%), Gaps = 15/353 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G  DF  M+D+++ +R  L     +  P ++ +  S DGTRKWLL  
Sbjct: 26  FRAKQLQRWIHQFGASDFTAMTDLAKSLRDKLATRAVVQSPAVISDHTSTDGTRKWLLD- 84

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLC+S+Q GC++ C FC TG Q   RNLT  EI+ Q+ 
Sbjct: 85  ----VGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTGKQGFNRNLTVGEIIGQLW 140

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   L    G E       P   R+I+N+VMMGMGEPL N++    +L +  D      
Sbjct: 141 MAEFELRKTKGIEPG-----PKGERQITNVVMMGMGEPLLNYEPTVTALKLMLDDNAYGL 195

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+TLSTSG VPNI ++G++  V LA+SLHA ++ LR+ LVP+N+KYPL+ L+ AC  
Sbjct: 196 SRRRVTLSTSGVVPNIDKLGQDCPVALAVSLHASNDALRDSLVPLNKKYPLKELMAACVR 255

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG----IPAKINLIPFNPWPGCEYLC 328
           Y   +    +TFEY ML G+ND+ + A  L+ +++     +P K NLIPFNP+P      
Sbjct: 256 YLEFAPRDFVTFEYCMLDGVNDTEQHARELVALVRHGAQLVPCKFNLIPFNPFPESGLTR 315

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
           S+   I  F++ +  +G  + IR  RG DI AACGQL    +   KV ++ MQ
Sbjct: 316 SNNPQIKLFAQVLMDAGIVTTIRKTRGDDIDAACGQLAGEVQDRTKV-QERMQ 367


>gi|15803040|ref|NP_289070.1| hypothetical protein Z3780 [Escherichia coli O157:H7 EDL933]
 gi|12516911|gb|AAG57627.1|AE005481_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 384

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 158/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+    E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKXXNXETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+P   Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLK-SLSKRIPKVPRQEMQ 381
           QL   +  R  +  R+ MQ
Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375


>gi|261856771|ref|YP_003264054.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2]
 gi|261837240|gb|ACX97007.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2]
          Length = 392

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 156/365 (42%), Positives = 219/365 (60%), Gaps = 26/365 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G+  ++L++  +++G        R +Q+ KW++ R +  F  M+D+++ +R  L
Sbjct: 21  NKINLLGLTPQQLKDWFVELG----EKPFRATQLLKWVHQRRVDSFDDMTDLAKSLRDKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  P I  ++ S DGTRK+LL       GG VE+  VYIPE  R TLC+SSQVGC
Sbjct: 77  RDLACIRAPAIRLDQQSSDGTRKFLLELDG---GGSVEM--VYIPEDDRATLCISSQVGC 131

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNI 182
           SL C+FC TG Q   RNLT  EI+ Q+ LA             E M+  +V   R ISN+
Sbjct: 132 SLACTFCSTGRQGFNRNLTTAEIVGQLWLA-------------ERMIDRAVNHNRAISNV 178

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL NF++V  + +I  D      S+RR+T+STSG +P I R+ E + V LAIS
Sbjct: 179 VFMGMGEPLLNFESVVDAATIMLDDNAYGLSRRRVTISTSGIIPAIDRLAERLPVALAIS 238

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++ LR++LVPIN+KYPL+ L+ AC  Y  +     I +EYVML+G+ND P  A  +
Sbjct: 239 LHAPNDALRDVLVPINQKYPLDDLMAACDRYAKVVPHGAIIYEYVMLEGVNDEPVHAEEM 298

Query: 303 IKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           I++L  +    K+NLIPFNP+P   Y  S +  I  F   +K +G ++  R  RG DI A
Sbjct: 299 IRLLAPRKDAVKVNLIPFNPFPSSGYKRSSRNRIERFRATLKAAGINTVPRKTRGDDIDA 358

Query: 361 ACGQL 365
           ACGQL
Sbjct: 359 ACGQL 363


>gi|330824021|ref|YP_004387324.1| ribosomal RNA large subunit methyltransferase N [Alicycliphilus
           denitrificans K601]
 gi|329309393|gb|AEB83808.1| Ribosomal RNA large subunit methyltransferase N [Alicycliphilus
           denitrificans K601]
          Length = 374

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 154/352 (43%), Positives = 207/352 (58%), Gaps = 25/352 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ RG  DF  MSD+++ +R  L     +   + + E  S DGT KWL  
Sbjct: 24  RFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKGCAHVSGLQAISEHASADGTVKWLFD 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +GG   +ETV+IPE  RGTLC+SSQ GC++ C FC TG Q   RNLT  EI+ Q+
Sbjct: 84  -----VGGGNAVETVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQL 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A  +L    G  D E        R ISN+VMMGMGEPL N+  +  +L I  D  G  
Sbjct: 139 WHAEHVLRQRRG--DGE--------RVISNVVMMGMGEPLQNYSALVPALRIMLDDHGYG 188

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP + R+G +  V LA+SLHA +++LR+ LVP+NRKYPL+ L+ ACR
Sbjct: 189 LSRRRVTVSTSGVVPMMDRLGRDCPVALAVSLHAPNDELRDNLVPLNRKYPLQELLAACR 248

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILK------GIPAKINLIPFNPWPG 323
            Y  L +A R  ITFEY ML G+ND P  A  LI ++       G+  K NLIPFNP+P 
Sbjct: 249 RY--LEHAPRDFITFEYCMLDGVNDQPEHARELIALVSRKAADGGVSCKFNLIPFNPFPA 306

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
                S    +  F++ +  +G  + +R  RG DI AACGQL    K   +V
Sbjct: 307 SGLRRSPAVAVSAFAKLLSDAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRV 358


>gi|94264318|ref|ZP_01288111.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93455284|gb|EAT05494.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 345

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 150/338 (44%), Positives = 200/338 (59%), Gaps = 23/338 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI+ W+Y     DF  M+DI++ VR LL +  +    E   E+ S DGT K+  R 
Sbjct: 28  FRARQIFSWLYRPDFSDFAQMTDIAKHVRALLAEKATFSRLEAAKEEHSTDGTVKFAFRL 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IE+V IPE+ R TLCVSSQVGC++ C+FC TGT   +RNLT  E++ QV 
Sbjct: 88  SDGHL-----IESVLIPEEDRHTLCVSSQVGCAMGCNFCLTGTMGFIRNLTVAEMVGQVD 142

Query: 153 LARSLL---GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
            A   L   G   G              +++N+V MGMGEPL NFDN+ K+++I  +  G
Sbjct: 143 QAAHWLWQRGAGSG--------------RLNNLVFMGMGEPLLNFDNLIKAINILMEQRG 188

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
              S RRIT+ST G VP +  +GE++ V LA+SLHA  +  R  L+P+NR YPL  L+ A
Sbjct: 189 HDLSGRRITVSTCGIVPRMKELGEKVPVNLAVSLHAADHATREQLMPVNRTYPLAELLQA 248

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           CR YP L   RRI  EY +L GINDSP  A  L+K L GI  KIN++PFN  P   Y C 
Sbjct: 249 CRQYP-LPPRRRIMIEYALLAGINDSPAAARLLVKQLHGIRCKINILPFNETPAFPYRCP 307

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           D   I  F + ++R+G+++ +RT RG DI AACGQL +
Sbjct: 308 DPATIEAFRQILRRAGHTTLLRTSRGADIAAACGQLAA 345


>gi|300312259|ref|YP_003776351.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1]
 gi|300075044|gb|ADJ64443.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 150/353 (42%), Positives = 210/353 (59%), Gaps = 15/353 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G+ DF  M+D+++ +R  L     +  P I+ +  S DGTRKWL+  
Sbjct: 28  FRAKQLQRWIHQFGVADFDQMTDLAKSLRDKLKTRAEVRAPAIISDHTSTDGTRKWLVD- 86

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVS+Q GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 87  ----VGQGNAVETVFIPEENRGTLCVSTQAGCAVNCRFCSTGKQGFNRNLSVAEIIGQLW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   L    G   IEG   P   R+I+N+VMMGMGEPL NF+    +L +  D      
Sbjct: 143 MAEFELRKTKG---IEGG--PKGERQITNVVMMGMGEPLLNFEPTVTALRLMLDDNAYGL 197

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+TLSTSG VP I ++ +E  V LA+SLHA ++ LR+ L+P+NRK+PL  L+ AC+ 
Sbjct: 198 SRRRVTLSTSGVVPMIGKLSQECPVALAVSLHASNDALRDSLIPLNRKHPLRELMLACKR 257

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILK----GIPAKINLIPFNPWPGCEYLC 328
           Y   +    ITFEY ML G+ND+   A  L+ ++K     IP K NLIPFNP+P      
Sbjct: 258 YLEFAPRDFITFEYCMLDGVNDTDTHARELVALVKEGETAIPCKFNLIPFNPFPESGLKR 317

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
           S    I  F++ +  +G  + IR  RG DI AACGQL    K   +V ++ MQ
Sbjct: 318 SHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVKDRTRV-QERMQ 369


>gi|116751471|ref|YP_848158.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|205829911|sp|A0LQM1|RLMN_SYNFM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|116700535|gb|ABK19723.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 342

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 151/350 (43%), Positives = 215/350 (61%), Gaps = 25/350 (7%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           ELEE +  IG  +R  R R  Q+++ +Y RG+R +   SD+S+  R  L     +    +
Sbjct: 13  ELEEWVQGIG--ERSFRAR--QLFRHVYGRGVRSWSECSDLSRMFRVQLEHGVELDALSV 68

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
           + ++ + DGT K+L       +     IE V IP+  R TLCVSSQVGC+L C FC TG+
Sbjct: 69  LKKEQADDGTSKYLF-----GLRDGHSIEAVLIPDLPRSTLCVSSQVGCALGCKFCLTGS 123

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
               RNL+A EI+ QV   +  LG                  +I+NIV MGMGEPL N D
Sbjct: 124 LGFKRNLSAAEIVDQVCQVQRDLGSRS---------------RITNIVFMGMGEPLANLD 168

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255
           +V +++ + ++  G++FS RRITLST+G VP + R+G E  V LA+SLHA  N+LR  L+
Sbjct: 169 SVLRAIRVIAEPNGMAFSHRRITLSTAGLVPQLRRLGRESPVNLAVSLHAAENELRAELM 228

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
           P+NR YPLE+L+ ACR YP L   +RITFEY++L GIND P+ A  L+K+L GI AK+NL
Sbjct: 229 PVNRTYPLEVLMAACREYP-LPPRKRITFEYILLDGINDDPKQAKQLVKLLHGIRAKVNL 287

Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +PFNP PG  +    ++ ++ F E ++ +  ++ +R  RG +I AACGQL
Sbjct: 288 MPFNPHPGSVFRKPSEQRVLAFQEALQNARITTHVRRSRGGEIGAACGQL 337


>gi|264679426|ref|YP_003279333.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
 gi|262209939|gb|ACY34037.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
          Length = 369

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 145/339 (42%), Positives = 197/339 (58%), Gaps = 20/339 (5%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ RG  DF  M+D+++ +R  L     I    +V E +S DGT KWL  
Sbjct: 20  RFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAHITALPVVTEHVSADGTVKWLFD 79

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    +E+V+IPE  RGTLCVSSQ GC++ C FC TG Q   RNL   EIL Q+
Sbjct: 80  -----VGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLNTGEILAQL 134

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L    G ED          R ISN+VMMGMGEPL N+  +  +L +  D  G  
Sbjct: 135 WYAEHSLRKRFGTED----------RIISNVVMMGMGEPLQNYSALVPALRVMLDDHGYG 184

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP + R+ ++  V LA+SLHA ++ LR+ LVP+N+KYP+  L+DAC 
Sbjct: 185 LSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDPLRDNLVPLNKKYPIAELLDACE 244

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPWPGCEY 326
            Y   +    ITFEY ML G+ND P  A  LI++++         K NLIPFNP+P    
Sbjct: 245 RYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGKSWCKFNLIPFNPFPASGL 304

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L S    +  F+  +  +G  + +R  RG DI AACGQL
Sbjct: 305 LRSPSARVTEFATLLSNAGIVTTVRKTRGDDIDAACGQL 343


>gi|120610108|ref|YP_969786.1| radical SAM protein [Acidovorax citrulli AAC00-1]
 gi|205829658|sp|A1TM24|RLMN_ACIAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120588572|gb|ABM32012.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax citrulli AAC00-1]
          Length = 373

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 148/358 (41%), Positives = 211/358 (58%), Gaps = 28/358 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R  Q+++WI+ RG  DF  MSD+++ +R  L+    +    ++ E +S DGT KWL  
Sbjct: 24  RFRAVQLFRWIHQRGASDFARMSDLAKSLREKLSGCAHVAALPVISEHVSADGTVKWLFD 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    +E+V+IPE  RGTLC+SSQ GC++ C FC TG Q   RNLT+ EI+ Q+
Sbjct: 84  -----VGDGNAVESVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTSGEIVAQL 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L    G ++          R ISN+VMMGMGEPL N+  +  +L    D  G  
Sbjct: 139 WFAEHALRARLGTQE----------RVISNVVMMGMGEPLQNYTALVPALRTMLDDHGYG 188

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP + R+ ++  V +A+SLHA ++ LR+ LVP+NRKYPL  L+DAC 
Sbjct: 189 LSRRRLTVSTSGVVPMMDRLSQDCAVAMAVSLHAPNDALRDQLVPLNRKYPLRELLDACT 248

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGC 324
            Y  L +A R  ITFEY ML G+ND P  A  LI +++     G+  K NLIPFNP+P  
Sbjct: 249 RY--LEHAPRDFITFEYCMLDGVNDQPEHARQLIDLVRPRGGEGVRCKFNLIPFNPFPAS 306

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQ 378
               S+ + +  F++ +  +G  + +R  RG DI AACGQL    K  ++   ++ RQ
Sbjct: 307 GLHRSNPQQVAAFAKMLSDAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRAAERMARQ 364


>gi|294340470|emb|CAZ88851.1| putative radical SAM enzyme, Cfr family, yfgB [Thiomonas sp. 3As]
          Length = 379

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 211/368 (57%), Gaps = 27/368 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L   +L+   R+ L E   + G    H   R  Q+++W++ +G+ DF+ MSD+++ +R  
Sbjct: 5   LTSTNLLQFDRDGLVEWFGRHG----HAAFRARQVFRWMHQKGVADFEAMSDLAKPLRQF 60

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +H  I    ++ E+ S DGT KWL       +G    +E V+IPE  R TLCVSSQ G
Sbjct: 61  LREHAHIAALPVLSEQRSADGTVKWLFD-----VGQGNAVEAVFIPEAQRNTLCVSSQAG 115

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLA----RSLLGDFPGCEDIEGMVIPSVGRKI 179
           C++ C FC TG Q   RNL   EIL Q+  A    R  LG  PG E           R I
Sbjct: 116 CAVNCKFCSTGHQGFSRNLQTWEILAQLWHAEFTMRRELG-LPGGE-----------RAI 163

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           SN+VMMGMGEPL N+  +  +L    D  G   S+RR+T+STSG VP I R+ ++  V L
Sbjct: 164 SNVVMMGMGEPLQNYSALVPALRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCPVAL 223

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  + LR+ LVP+NRKYPL  L+ AC+ Y   +    ITFEY ML G+ND+P  A
Sbjct: 224 AVSLHAPVDALRDELVPLNRKYPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALA 283

Query: 300 LNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            +L+++++   +  K NLIPFNP+P      S    +  F++ +  +G  + +R  RG D
Sbjct: 284 QDLVRLVRAAQVNCKFNLIPFNPFPQSGLKRSSAARVAAFAQVLLDAGLVTTVRKTRGDD 343

Query: 358 ILAACGQL 365
           I AACGQL
Sbjct: 344 IDAACGQL 351


>gi|152989809|ref|YP_001355531.1| hypothetical protein NIS_0057 [Nitratiruptor sp. SB155-2]
 gi|205829830|sp|A6Q115|RLMN_NITSB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|151421670|dbj|BAF69174.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 355

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 153/377 (40%), Positives = 228/377 (60%), Gaps = 42/377 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++ + +EEL++ +          + R +QI++WIY +G +DF+ MS++ + +R  L +
Sbjct: 2   KNILDLTKEELQQEVTP--------KFRANQIYQWIYQKGAKDFESMSNLPKSMREELKE 53

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-------------SR 113
            F+I  P+I++ ++S DG++K+LL      +     +E+V +P K             +R
Sbjct: 54  KFTITPPKILNVEVSKDGSKKYLL-----GLQDGHTVESVLLPMKKEERDEKGNILKEAR 108

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC + C FC T     VRNLT  EI+ QVL  R            E   IP
Sbjct: 109 YTVCVSSQVGCKVGCEFCLTAKGGFVRNLTPGEIVEQVLTIR------------EDNNIP 156

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
           +  R++ NIV MGMGEPL N +NV K++ I SD  G+S S RR T+STSG  P I ++GE
Sbjct: 157 A-NRRV-NIVYMGMGEPLDNLENVAKAVKIFSDEHGMSISPRRQTISTSGLAPKIKKLGE 214

Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV ++LR  L+PIN+ Y +E +I A + +P +   +R+ FEY+M+K +
Sbjct: 215 MNLGVLLAISLHAVDDELRQKLMPINKAYNIESVIQAVKEFP-IDQRKRVMFEYLMIKNL 273

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND  + A  L+K+L GI AK+NLI FNP+PG  +   + KD+  F + +   G    IR 
Sbjct: 274 NDDLKAAKKLVKLLHGIKAKVNLIYFNPYPGSPFQRPEPKDVEAFQKYLLDHGVLCTIRE 333

Query: 353 PRGLDILAACGQLKSLS 369
            +GLDI AACGQLK  S
Sbjct: 334 SKGLDISAACGQLKEKS 350


>gi|220917417|ref|YP_002492721.1| radical SAM enzyme, Cfr family [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955271|gb|ACL65655.1| radical SAM enzyme, Cfr family [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 372

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 145/348 (41%), Positives = 210/348 (60%), Gaps = 17/348 (4%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79
           A L  G+ ++  R R  Q+++W+++RG    + ++D+ + +R  L +   +   E   E+
Sbjct: 20  AALIAGLGEKPFRAR--QVYRWLHLRGAASLEELTDVPRALRERLAEGTRLTTLERATEQ 77

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
            S DGT KW  R      G    IE+VY+PE  R TLCVS+QVGC++ C+FC TGT  L 
Sbjct: 78  RSADGTIKWTWR-----TGDGKLIESVYMPETDRKTLCVSTQVGCAVGCTFCMTGTMGLA 132

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNLT  EI+ QV  A   L +    E           R ++N+V MGMGEPL N+ ++K 
Sbjct: 133 RNLTPGEIVDQVHRANRRLIELGEGEGP---------RPLTNLVFMGMGEPLANYRSLKV 183

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259
           +L +     G +FS R +T+STSG VP + R+GEE  V LA+SL+A ++  R+ ++PINR
Sbjct: 184 ALDLLLSEDGPNFSHRHVTVSTSGLVPVMRRLGEETQVKLAVSLNATTDAQRDAIMPINR 243

Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
           +YPL  L+ ACR +P +   RRITFEYVML G+ND+P DA  L ++L+GIPAK+NLIP+N
Sbjct: 244 RYPLAELLRACREFP-MKQGRRITFEYVMLGGVNDAPEDAERLARLLRGIPAKVNLIPYN 302

Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             PG  +       +  F + +     ++ +R  RG DI AACGQL +
Sbjct: 303 ENPGLGFAAPAPSAVERFRDLLVARNVTAVVRKNRGTDIAAACGQLAA 350


>gi|311105357|ref|YP_003978210.1| radical SAM superfamily protein 2 [Achromobacter xylosoxidans A8]
 gi|310760046|gb|ADP15495.1| radical SAM superfamily protein 2 [Achromobacter xylosoxidans A8]
          Length = 384

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 151/365 (41%), Positives = 213/365 (58%), Gaps = 9/365 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  +++ +L+G+    L E + K G        R  Q+ +W++ RG   F  M+D++++ 
Sbjct: 1   METVERINLLGLDGSALSELVGKWGGKP----FRARQLQRWMHQRGADSFDAMTDLARDF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L QH  I    +  E+ S DGTRKWL       +G    IETV+IPE  RGTLC+SS
Sbjct: 57  RGQLAQHCRIEALPVNIEQRSTDGTRKWLFD-----VGQGNAIETVFIPEDDRGTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG Q   RNL   EI+ Q+  A+ +L    G   +E        R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATEDTRVIS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  +L +  D      S+RR+T+STSG VP + R+ ++  V LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL+ L+ AC  Y   +    ITFEY ML GIND+ + A 
Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAK 291

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI+I + +  K+NLIPFNP+P      S+   +  F++ +  +G  + +R  RG DI A
Sbjct: 292 ELIQIARQLRCKLNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDA 351

Query: 361 ACGQL 365
           ACGQL
Sbjct: 352 ACGQL 356


>gi|296136235|ref|YP_003643477.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
 gi|295796357|gb|ADG31147.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
          Length = 379

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 151/368 (41%), Positives = 211/368 (57%), Gaps = 27/368 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L   +L+   R+ L E   + G    H   R  Q+++W++ +G+ DF+ MSD+++ +R  
Sbjct: 5   LTSTNLLQFDRDGLVEWFGRHG----HAAFRARQVFRWMHQKGVADFEAMSDLAKPLRQF 60

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +H  I    ++ E+ S DGT KWL       +G    +E V+IPE  R TLCVSSQ G
Sbjct: 61  LREHAHIAALPVLSEQRSADGTVKWLFD-----VGQGNAVEAVFIPEAQRNTLCVSSQAG 115

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLA----RSLLGDFPGCEDIEGMVIPSVGRKI 179
           C++ C FC TG Q   RNL   EIL Q+  A    R  LG  PG E           R I
Sbjct: 116 CAVNCKFCSTGHQGFSRNLQTWEILAQLWHAEFTMRRELG-LPGGE-----------RAI 163

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           SN+VMMGMGEPL N+  +  +L    D  G   S+RR+T+STSG VP I R+ ++  V L
Sbjct: 164 SNVVMMGMGEPLQNYSALVPALRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCPVAL 223

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  + LR+ LVP+NRKYPL  L+ AC+ Y   +    ITFEY ML G+ND+P  A
Sbjct: 224 AVSLHAPVDALRDELVPLNRKYPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALA 283

Query: 300 LNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            +L+++++   +  K NLIPFNP+P      S    +  F++ +  +G  + +R  RG D
Sbjct: 284 EDLVRLVRAAQVNCKFNLIPFNPFPQSGLKRSSAARVAAFAQVLLDAGLVTTVRKTRGDD 343

Query: 358 ILAACGQL 365
           I AACGQL
Sbjct: 344 IDAACGQL 351


>gi|77919618|ref|YP_357433.1| ribosomal RNA large subunit methyltransferase N [Pelobacter
           carbinolicus DSM 2380]
 gi|123729427|sp|Q3A2Z4|RLMN_PELCD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|77545701|gb|ABA89263.1| 23S rRNA m(2)A-2503 methyltransferase [Pelobacter carbinolicus DSM
           2380]
          Length = 371

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 153/355 (43%), Positives = 217/355 (61%), Gaps = 34/355 (9%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IY 72
           EEL E L  +G      R R  Q+ +W+Y R + DF  MSD+S+ +R  L+Q   I  + 
Sbjct: 19  EELTEFLAGMG----KERFRAGQVMRWMYHRLVDDFDAMSDLSKVLRAELHQRARISRLT 74

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFC 131
           PE  ++  S DGTRK+L R           IE+V IP + +R TLC+S+QVGC++ C FC
Sbjct: 75  PEATED--SRDGTRKYLFRLE-----DGETIESVRIPMDDNRATLCISTQVGCAMGCVFC 127

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
           +TG+  LVRNLT  EI+ QV  A   L D P                ++NIV+MGMGEPL
Sbjct: 128 HTGSFGLVRNLTPGEIVNQVCAA---LADGP----------------VNNIVLMGMGEPL 168

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251
            N DNV K+L I     GL +S R++TLST+G VP +  +G+ + V LA+SL+A ++++R
Sbjct: 169 HNLDNVVKALQILYMPQGLDYSPRKVTLSTAGLVPQMQELGKRVRVNLAVSLNATTDEVR 228

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
           N L+P+N++YPL+ L+ ACR YP L   +RITFEY++++ +NDS +DA  L+K+L GI A
Sbjct: 229 NRLMPVNQRYPLQQLMAACRQYP-LHAKKRITFEYILIRDVNDSDQDARRLVKLLHGIKA 287

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           K+N+IPFN     E+    ++ I  F   +   G  +  R  +G DI AACGQLK
Sbjct: 288 KVNIIPFNEHSASEFRAPTEERISRFQGYLLDHGMVAIRRASKGQDISAACGQLK 342


>gi|27904760|ref|NP_777886.1| hypothetical protein bbp265 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|46397192|sp|Q89AK8|RLMN_BUCBP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|27904157|gb|AAO26991.1| conserved hypothetical protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 373

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 154/365 (42%), Positives = 212/365 (58%), Gaps = 22/365 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + +++    IG     +  R  Q+ KWIY     DF  M++IS ++R  L+
Sbjct: 16  KTNLLNFDLQSMKKFFCSIG----ELEFRAQQVMKWIYQHYCDDFNKMTNISLQLRKKLS 71

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  P+ ++ K+S DGT KW +    +CI      ETV IP+  R TLC+SSQ+GCS
Sbjct: 72  TLCCITPPKFLNHKVSVDGTMKWSVVIGNQCI------ETVCIPKNQRTTLCISSQLGCS 125

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   +NL   EI+ QV   + L+  F            ++  KI+N+V+M
Sbjct: 126 LACSFCLTGQQGFNKNLNVSEIIGQVWYIQKLIY-FSK---------INITNKITNVVLM 175

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  +L I  D  GL+ SK  ITLST+G VP + ++   I V LA+SLHA
Sbjct: 176 GMGEPLLNLSNVVHALRIMLDEFGLNMSKNHITLSTAGIVPALKKLHTMIDVSLAVSLHA 235

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA--RRITFEYVMLKGINDSPRDALNLI 303
            +N +RN L+PIN+KY +E ++ A + Y   SNA  +R+T EYVML GIND+   A  L 
Sbjct: 236 SNNTIRNQLMPINKKYNIESVLCAIKKYLYYSNANKKRVTIEYVMLSGINDAAYHAEELF 295

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LK IP KINLIP+N + G  Y+CS+   I  F+  + + G    IR  RG DI AACG
Sbjct: 296 NLLKSIPHKINLIPWNHFSGSNYICSNDITINNFANILIKKGCIVTIRKIRGYDINAACG 355

Query: 364 QLKSL 368
           QL  +
Sbjct: 356 QLSGI 360


>gi|241764492|ref|ZP_04762513.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
 gi|241366076|gb|EER60673.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
          Length = 373

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 154/360 (42%), Positives = 209/360 (58%), Gaps = 25/360 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ RG  DF  MSD++  +R  L     +    ++ E +S DGT KWL  
Sbjct: 24  RFRATQLFRWIHQRGASDFDAMSDLAVALRTKLKGCAFVQALPVISEHVSADGTVKWLFD 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    +E+V+IPE  RGTLCVSSQ GC++ C FC TG Q   RNLT  EI+ Q+
Sbjct: 84  -----VGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQL 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L             + +  R ISN+VMMGMGEPL N+  +  +L +  D  G  
Sbjct: 139 WFAEHALRK----------RLATQSRVISNVVMMGMGEPLQNYTALVPALRVMLDDHGYG 188

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP + R+ ++  V LA+SLHA ++ LR+ LVP+NRKYPLE L+DACR
Sbjct: 189 LSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDNLVPLNRKYPLEELLDACR 248

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKIL---KGIP--AKINLIPFNPWPGC 324
            Y  L +A R  ITFEY ML G+ND    A  LI ++   +G+P   K NLIPFNP+P  
Sbjct: 249 RY--LEHAPRDFITFEYCMLDGVNDQVEHARQLIALVNPAQGVPIRCKFNLIPFNPFPAS 306

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK-SLSKRIPKVPRQEMQIT 383
             L S    +  F++ +  +G  + +R  RG DI AACGQL   +  R   V R   Q T
Sbjct: 307 GLLRSPSAQVAMFAKVLSDAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRAVERMAKQRT 366


>gi|281601919|gb|ADA74903.1| protein yfgB [Shigella flexneri 2002017]
          Length = 340

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 153/345 (44%), Positives = 204/345 (59%), Gaps = 19/345 (5%)

Query: 40  KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG 99
           KW+Y     +F  M+DI++ +R  L +   I  PE+V+E+ S DGT KW +        G
Sbjct: 3   KWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------G 56

Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159
              +ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV  A  ++G
Sbjct: 57  DQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG 116

Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
                  + G       R I+N+VMMGMGEPL N +NV  ++ I  D  G   SKRR+TL
Sbjct: 117 ----AAKVTGQ------RPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTL 166

Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           STSG VP + ++G+ I V LAISLHA ++++R+ +VPIN+KY +E  + A R Y   SNA
Sbjct: 167 STSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNA 226

Query: 280 R--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
              R+T EYVML  +ND    A  L ++LK  P KINLIP+NP+P   Y  S    I  F
Sbjct: 227 NQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPDAPYGRSSNSRIDRF 286

Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLK-SLSKRIPKVPRQEMQ 381
           S+ +   G+++ +R  RG DI AACGQL   +  R  +  R+ MQ
Sbjct: 287 SKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 331


>gi|118578868|ref|YP_900118.1| ribosomal RNA large subunit methyltransferase N [Pelobacter
           propionicus DSM 2379]
 gi|205829797|sp|A1AL40|RLMN_PELPD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118501578|gb|ABK98060.1| 23S rRNA m(2)A-2503 methyltransferase [Pelobacter propionicus DSM
           2379]
          Length = 347

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 149/342 (43%), Positives = 209/342 (61%), Gaps = 30/342 (8%)

Query: 28  QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ--HFSIIYPEIVDEKISCDGT 85
           Q   R R +Q++KWIY    R FQ M++IS+++R  L    + S + PE V+  +  DGT
Sbjct: 22  QGKERFRATQVFKWIYQHDARSFQEMTNISKDLRAELEAKAYISNLEPEAVE--VGGDGT 79

Query: 86  RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145
           RK+L       +     +E+V IP++ R TLC+SSQVGC++ C+FC TGT +L RNLT  
Sbjct: 80  RKYLF-----GLEDGNSVESVLIPDEGRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTA 134

Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           EI+ Q++  R          D+E          I NIVMMGMGEPL N DNV  ++ I  
Sbjct: 135 EIVNQIMAVR---------RDVE----------IRNIVMMGMGEPLHNLDNVIPAIHIMI 175

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLE 264
           D  GL  S RR+T+ST G  P + R+G E+  V LA+SL+A +++LR+ ++PINR+YPL+
Sbjct: 176 DGNGLQLSNRRVTVSTCGLAPEMERLGRELPNVNLAVSLNATTDELRDRIMPINRRYPLK 235

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
            L+ ACR +P L   R++TFEYVML G+ND+  DA  L+++   IP K+NLIPFN + GC
Sbjct: 236 ELLSACREFP-LPGRRKVTFEYVMLGGLNDTLEDAKRLLRLTSDIPNKVNLIPFNEFQGC 294

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           E+    +  I  F + +     +   R  RG DI AACGQLK
Sbjct: 295 EFRSPTRAAIDAFHKYLIDRHVTVITRDSRGSDISAACGQLK 336


>gi|197122634|ref|YP_002134585.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. K]
 gi|196172483|gb|ACG73456.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. K]
          Length = 372

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 145/348 (41%), Positives = 209/348 (60%), Gaps = 17/348 (4%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79
           A L  G+ ++  R R  Q+++W+++RG    + M+D+ + +R  L +   +   E   E+
Sbjct: 20  AALIAGLGEKPFRAR--QVYRWLHLRGAASLEEMTDVPRALRERLAEGTRLTTLERATEQ 77

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
            S DGT KW  R      G    IE+VY+PE  R TLCVS+QVGC++ C+FC TGT  L 
Sbjct: 78  RSADGTIKWTWR-----TGDGKLIESVYMPETDRKTLCVSTQVGCAVGCTFCMTGTMGLA 132

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL   EI+ QV  A   L +    E           R ++N+V MGMGEPL N+ ++K 
Sbjct: 133 RNLGPGEIVDQVHRANRRLIELGEGEGP---------RPLTNLVFMGMGEPLANYRSLKV 183

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259
           +L +     G +FS R +T+STSG VP + R+GEE  V LA+SL+A ++  R+ ++PINR
Sbjct: 184 ALDLLLSEDGPNFSHRHVTVSTSGLVPVMRRLGEETQVKLAVSLNATTDAQRDAIMPINR 243

Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
           +YPL  L+ ACR +P +   RRITFEYVML G+ND+P DA  L ++L+GIPAK+NLIP+N
Sbjct: 244 RYPLAELLRACREFP-MKQGRRITFEYVMLGGVNDAPEDAERLARLLRGIPAKVNLIPYN 302

Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             PG  +       +  F + +     ++ +R  RG DI AACGQL +
Sbjct: 303 ENPGLGFAAPAPAAVERFRDLLVARNVTAVVRKNRGTDIAAACGQLAA 350


>gi|119944920|ref|YP_942600.1| hypothetical protein Ping_1165 [Psychromonas ingrahamii 37]
 gi|205829827|sp|A1SU36|RLMN_PSYIN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|119863524|gb|ABM03001.1| radical SAM enzyme, Cfr family protein [Psychromonas ingrahamii 37]
          Length = 372

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 152/364 (41%), Positives = 211/364 (57%), Gaps = 22/364 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KK +L+ + RE L    +++G        R  Q+ KWIY  G  DF  MS++++++R  
Sbjct: 3   IKKVNLLDLNREGLRAFFVELG----EKPFRAEQVMKWIYHYGCEDFDLMSNVNKKLRQK 58

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +   I+ PEI  E+ S DGT KW +        G  E+ETVYIPEK R TLC+SSQVG
Sbjct: 59  LKECAEIVAPEIKVEQRSNDGTIKWAMTV------GDQEVETVYIPEKDRATLCISSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C+FC T  Q   RNL+  EI+ QV  A  ++G          +   S  R I+N+V
Sbjct: 113 CVLACNFCSTAQQGFNRNLSVSEIIGQVWRAAKIVG----------VTGESGKRPITNVV 162

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N +N+  ++ +  D  G + SKRR+T+STSG VP +  +G+ I V LAISL
Sbjct: 163 MMGMGEPLLNLNNLIPAMELMLDDFGYALSKRRVTVSTSGVVPALDILGDRIDVSLAISL 222

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301
           HA ++ LR+ ++PIN KY +   +   + Y   S A R  +  EY++L   NDS   A  
Sbjct: 223 HAANDTLRSQMMPINDKYNIADFLAGVKRYIAKSKANRGKVYIEYLLLDHFNDSTDQAHE 282

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LK  P KINLIPFNP+PG +Y       +  F++ +   GY+  +R  RG DI AA
Sbjct: 283 LAILLKDTPCKINLIPFNPFPGNDYQKPSNSRVDRFNKVLMEYGYTVTVRKTRGDDIDAA 342

Query: 362 CGQL 365
           CGQL
Sbjct: 343 CGQL 346


>gi|71278436|ref|YP_270905.1| ribosomal RNA large subunit methyltransferase N [Colwellia
           psychrerythraea 34H]
 gi|123774847|sp|Q47WB7|RLMN_COLP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|71144176|gb|AAZ24649.1| radical SAM enzyme, Cfr family [Colwellia psychrerythraea 34H]
          Length = 386

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 158/361 (43%), Positives = 211/361 (58%), Gaps = 20/361 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + + E L  IG        R  QI KWIY  G  DF+ M++I++++R  L 
Sbjct: 7   KVNLLNFDHKSMREYLESIG----EKPFRADQIMKWIYHFGYSDFEQMTNINKKLREKLQ 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++  I  P+I ++++S DGT K+ L+       G  E+ETV+IPE  R TLCVSSQVGC+
Sbjct: 63  RNCIISAPDISEKQVSEDGTIKYALKLE-----GGQEVETVWIPENDRATLCVSSQVGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T  Q   RNL+  EI+ QV    + +G       I G       R I+NIVMM
Sbjct: 118 LECTFCATAQQGFNRNLSMAEIIGQVWRVANDIG----ATRIAGT------RPITNIVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  N+  +L    + +G   SKRR+T+STSG VP +  +  +I   LAIS+HA
Sbjct: 168 GMGEPLLNMKNLIPALDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKIDCALAISIHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            +N LR+ LVPIN+KYPLE  I A  R+  G    ++ T EYVML  +NDS   A  L  
Sbjct: 228 PNNKLRDELVPINKKYPLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDSTDQAHELAH 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            LKG+P+KINLIPFNP+PG  Y  S    I  F + ++  G +   R  RG DI AACGQ
Sbjct: 288 ALKGLPSKINLIPFNPYPGSPYSRSSNSRIDRFDKVLQSYGLTVITRRTRGEDIDAACGQ 347

Query: 365 L 365
           L
Sbjct: 348 L 348


>gi|326316277|ref|YP_004233949.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373113|gb|ADX45382.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 373

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 148/358 (41%), Positives = 210/358 (58%), Gaps = 28/358 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R  Q+++WI+ RG  DF  MSD+++ +R  L+    +    ++ E +S DGT KWL  
Sbjct: 24  RFRAVQLFRWIHQRGASDFARMSDLAKSLREKLSGCAHVAALPVISEHVSADGTVKWLFD 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    +E+V+IPE  RGTLC+SSQ GC++ C FC TG Q   RNLT+ EI+ Q+
Sbjct: 84  -----VGDGNAVESVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTSGEIVAQL 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L    G ++          R ISN+VMMGMGEPL N+  +  +L    D  G  
Sbjct: 139 WFAEHALRARLGTQE----------RVISNVVMMGMGEPLQNYTALVPALRTMLDDHGYG 188

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP + R+ ++  V +A+SLHA ++ LR+ LVP+NRKYPL  L+DAC 
Sbjct: 189 LSRRRLTVSTSGVVPMMDRLSQDCAVAMAVSLHAPNDALRDQLVPLNRKYPLRELLDACT 248

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGC 324
            Y  L +A R  ITFEY ML G+ND P  A  LI +++     G+  K NLIPFNP+P  
Sbjct: 249 RY--LEHAPRDFITFEYCMLDGVNDQPEHARQLIDLVRPRGAEGVRCKFNLIPFNPFPAS 306

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQ 378
               S+   +  F++ +  +G  + +R  RG DI AACGQL    K  ++   ++ RQ
Sbjct: 307 GLHRSNPGQVAAFAKLLSDAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRAAERMARQ 364


>gi|218782479|ref|YP_002433797.1| radical SAM enzyme, Cfr family [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763863|gb|ACL06329.1| radical SAM enzyme, Cfr family [Desulfatibacillum alkenivorans
           AK-01]
          Length = 359

 Score =  271 bits (694), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 145/338 (42%), Positives = 213/338 (63%), Gaps = 22/338 (6%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  QI +W+Y R    F  M+++++  R LL+ HF+I   +I+  + S DG+RK+L +  
Sbjct: 31  RAFQILQWVYQRQADSFDVMTNLAKRHRQLLSDHFTIGRLKILQTQDSSDGSRKFLFQ-- 88

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
             C  G   IETV IPEK   TLCVS+QVGC++ C FC T +  L R+L A EI+ Q+  
Sbjct: 89  --CADG-ASIETVLIPEKGHHTLCVSTQVGCAMGCKFCCTASMGLTRSLQANEIISQIRD 145

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSF 212
            ++ +      ED E          + N+V MGMGEPL N+DNVK+++ I +D+  GL F
Sbjct: 146 VQATM------EDPE---------HLRNLVFMGMGEPLANWDNVKQAMDIITDNDWGLRF 190

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S RR+T+ST G VP +A VG++  V LA+SL+A  N++R+ ++P+N+K+P+E L+ AC+ 
Sbjct: 191 SGRRVTISTVGLVPKMAAVGKDTRVKLAVSLNAPDNEIRDQIMPVNKKHPIEELLQACKD 250

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           +P L   RR+TFEYV+LKG+NDSP  A  L K+L   P KINLIP+NP     +   D +
Sbjct: 251 FP-LRPGRRVTFEYVLLKGVNDSPAHARKLGKLLAHQPCKINLIPYNPHENSPFERPDPE 309

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
            +  F + +    Y+  +R  +GLDI AACGQLK+ ++
Sbjct: 310 AVDAFYKVLMDKNYTVIVRHSKGLDIKAACGQLKAANQ 347


>gi|94268941|ref|ZP_01291330.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93451405|gb|EAT02257.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 345

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/338 (44%), Positives = 199/338 (58%), Gaps = 23/338 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI+ W+Y     DF  M+DI++ VR LL +  +        E+ S DGT K+  R 
Sbjct: 28  FRARQIFSWLYRPDFSDFAQMTDIAKHVRALLAEKATFSRLAAAKEEHSTDGTVKFAFRL 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IE+V IPE+ R TLCVSSQVGC++ C+FC TGT   +RNLT  E++ QV 
Sbjct: 88  SDGHL-----IESVLIPEEDRHTLCVSSQVGCAMGCNFCLTGTMGFIRNLTVAEMVGQVD 142

Query: 153 LARSLL---GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
            A   L   G   G              +++N+V MGMGEPL NFDN+ K+++I  +  G
Sbjct: 143 QAAHWLWQRGARSG--------------RLNNLVFMGMGEPLLNFDNLIKAINILMEQRG 188

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
              S RRIT+ST G VP +  +GE++ V LA+SLHA  +  R  L+P+NR YPL  L+ A
Sbjct: 189 HDLSGRRITVSTCGIVPRMKELGEKVPVNLAVSLHAADHATREQLMPVNRTYPLAELLQA 248

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           CR YP L   RRI  EY +L GINDSP  A  L+K L GI  KIN++PFN  P   Y C 
Sbjct: 249 CRQYP-LPPRRRIMIEYALLAGINDSPAAARLLVKQLHGIRCKINILPFNETPAFPYRCP 307

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           D   I  F + ++R+G+++ +RT RG DI AACGQL +
Sbjct: 308 DPATIEAFRQILRRAGHTTLLRTSRGADIAAACGQLAA 345


>gi|237745509|ref|ZP_04575989.1| radical SAM enzyme [Oxalobacter formigenes HOxBLS]
 gi|229376860|gb|EEO26951.1| radical SAM enzyme [Oxalobacter formigenes HOxBLS]
          Length = 387

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 152/358 (42%), Positives = 213/358 (59%), Gaps = 20/358 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G+ DF GM+D+++ +R  L     +  P+++ + +S DGTRKWLL  
Sbjct: 28  FRAKQLQRWIHQSGVSDFAGMTDLAKSLRGKLEGCAEVRAPKVLKDHLSADGTRKWLLD- 86

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    IETVYIPE +RGTLCVS+Q GC++ C FC TG Q   RNLT +EI+ Q+ 
Sbjct: 87  ----VGEGNAIETVYIPEDNRGTLCVSTQAGCAVNCLFCSTGKQGFSRNLTTDEIIGQLW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   +         + M      R+ISN+VMMGMGEPL NFD    +L +  D      
Sbjct: 143 MAEFAI------RRSKNMAANQSERQISNVVMMGMGEPLFNFDASVNALKLMLDDNAYGL 196

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP I R+ +E  V LA+SLHA S+ LR++LVP+NRK+PL  L+ ACR 
Sbjct: 197 SRRRVTVSTSGVVPMIDRLAKECPVALAVSLHAPSDKLRDMLVPLNRKHPLSELMAACRR 256

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG----IPAKINLIPFN--PWPGCEY 326
           Y   +    ITFEY ML GIND+   A  L++++K     +  K+NLIPFN  P PG + 
Sbjct: 257 YLEYAPRDFITFEYCMLDGINDTDEHAKELVELVKHGSDPVSCKLNLIPFNSIPMPGLKR 316

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQITG 384
             S    I  F++ +  +G  + +R  RG DI AACG L    +   +V R+ M  +G
Sbjct: 317 --SSDARISAFAKILLDAGIVTTVRKTRGEDIEAACGLLAGDVRDRTRV-RERMAESG 371


>gi|85859749|ref|YP_461951.1| radical SAM protein [Syntrophus aciditrophicus SB]
 gi|123752486|sp|Q2LUM5|RLMN_SYNAS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|85722840|gb|ABC77783.1| radical SAM family enzyme [Syntrophus aciditrophicus SB]
          Length = 348

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/363 (41%), Positives = 215/363 (59%), Gaps = 27/363 (7%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  EE+E  +  +G      + R  QI KW+Y +G + F  M+ +S+ VR  LN+   I 
Sbjct: 11  MSLEEIESFISSLG----KEKYRARQIMKWLYSQGAKSFDEMTTLSRAVRDQLNEMACIT 66

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
            PEI   + S DGTRK L R           IE+V IP K   T C+S+QVGC + C FC
Sbjct: 67  LPEIARVQQSSDGTRKILFRLQDNSF-----IESVLIPGKHNWTACISTQVGCHMGCRFC 121

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
           +T  Q   RNL   EI  Q+ + +  L + P               +I NIVMMGMGEPL
Sbjct: 122 FTARQGFRRNLKPSEITGQLTMLQFYLPEGP---------------EIKNIVMMGMGEPL 166

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251
            N+ N  K++ I +   GL FS R+ITLSTSG  P I ++G ++ + LAISL+A ++ +R
Sbjct: 167 ANYRNTLKAIRIITSDYGLGFSTRKITLSTSGITPMIEQLGRDLCINLAISLNAPTDSIR 226

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
           + L+P+NRKYPL+ L+ ACR+YP +   R +TFEY+++ G+N SP  A  L ++LKGI  
Sbjct: 227 SELMPVNRKYPLDRLLQACRNYP-MPGRRMLTFEYILIDGVNSSPAHAEMLCRLLKGIRC 285

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLS 369
           K+NLI FN +P C +    ++ ++ F + + +  Y++ IR  RG DILAACGQL  K+L 
Sbjct: 286 KLNLIRFNEFPDCPFKTPSEETVLAFQQILVKHHYTAIIRASRGRDILAACGQLSGKALE 345

Query: 370 KRI 372
           +++
Sbjct: 346 EKL 348


>gi|205829861|sp|A9BMV6|RLMN_DELAS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 374

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/356 (41%), Positives = 203/356 (57%), Gaps = 23/356 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ RG  DF  MSD+++ +R  L     I    ++ E +S DGT KWL  
Sbjct: 24  RFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKACAHITALPVLTEHVSADGTVKWLFD 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +GG   +E V+IPE  RGTLCVSSQ GC++ C FC TG Q   RNL+  EIL Q+
Sbjct: 84  -----VGGGDAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEILAQL 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L    G             R ISN+VMMGMGEPL N+  +  +L    D  G  
Sbjct: 139 WYAEHSLRKRLGT---------GGERVISNVVMMGMGEPLQNYTALVPALRAMLDDHGYG 189

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP I R+ ++  V +A+SLHA +++LR+ LVP+NRKYP+  L+DAC 
Sbjct: 190 LSRRRVTVSTSGVVPMIDRLSQDCAVAMAVSLHAPNDELRDPLVPLNRKYPIHELLDACE 249

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPWPGCEY 326
            Y   +    ITFEY ML G+ND P  A  LI++++         K NLIPFNP+P    
Sbjct: 250 RYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGRSWCKFNLIPFNPFPASGL 309

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQ 378
           L S    +  F+  +  +G  + +R  RG DI AACGQL    K  ++   ++ RQ
Sbjct: 310 LRSPAARVTEFASLLSNAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRAAERMARQ 365


>gi|121604771|ref|YP_982100.1| radical SAM protein [Polaromonas naphthalenivorans CJ2]
 gi|205829800|sp|A1VNF1|RLMN_POLNA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120593740|gb|ABM37179.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas
           naphthalenivorans CJ2]
          Length = 382

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 143/339 (42%), Positives = 199/339 (58%), Gaps = 20/339 (5%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ +G  DF+ M+D+++ +R  L     I    +V    S DGT KWL  
Sbjct: 24  RFRATQLFRWIHQKGASDFEQMTDLAKSLREKLAVSAHIQGLNVVSRHESADGTIKWLFD 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    IETV+IPE  RGTLC+SSQ GC++ C FC TG Q   RNLT  EI+ Q+
Sbjct: 84  -----VGAGDVIETVFIPETDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIISQL 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L    G  +          R ISN+VMMGMGEPL N+  +  +L +  +  G  
Sbjct: 139 WFAEHFLRKHLGRNE----------RVISNVVMMGMGEPLQNYSQLLPALKVMLNDHGYG 188

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP I R+ ++  V LA+SLHA  + LR+ LVP+N+KYP+  L++AC 
Sbjct: 189 LSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQDALRSNLVPLNKKYPIAELLEACT 248

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGCEY 326
            Y   +    ITFEY ML G+ND P  A  L+ ++K     G+  K NLIPFNP+P    
Sbjct: 249 RYQSAAPRDFITFEYCMLDGVNDQPEHARQLVALMKTHAANGLSCKFNLIPFNPFPASGL 308

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L SD   ++ F++ +  +G  + +R  RG DI AACGQL
Sbjct: 309 LRSDMPQVMAFAKILMDAGIITTVRKTRGDDIDAACGQL 347


>gi|319941514|ref|ZP_08015841.1| ribosomal RNA large subunit methyltransferase N [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804988|gb|EFW01827.1| ribosomal RNA large subunit methyltransferase N [Sutterella
           wadsworthensis 3_1_45B]
          Length = 400

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/355 (42%), Positives = 212/355 (59%), Gaps = 18/355 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++   + DF  M+D+++  R  L +   I  PE++ EK S DGTRKWL   
Sbjct: 47  FRARQLTRWVHRHLVCDFNEMTDLAKTFRAKLLKLAEIRPPEVIHEKKSSDGTRKWLF-- 104

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +E V+IPE  RGTLC+SSQ GC++ C FC TG Q   RNLT  EI+ Q+ 
Sbjct: 105 ---AVGNGNAVEAVFIPEDDRGTLCISSQAGCAMGCLFCSTGKQGFNRNLTTAEIVGQLW 161

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   L     C D  G+  P+  R ISN+V+MGMGEPL N D V  ++ I  D  G   
Sbjct: 162 TAEREL-----CRD-RGITDPN-DRVISNVVLMGMGEPLQNLDAVIPAIKIFLDDDGYGL 214

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG V  I ++ E   V LA+SLHA  + LR+ L+PIN+K+PL  L+ ACR 
Sbjct: 215 SRRRVTVSTSGLVRQIDKLAEAAPVALAVSLHAADDGLRDKLMPINKKHPLGDLMAACRR 274

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSD 330
           Y  ++    ITFEYVML GINDS  DA +L  +++   +P K NLIPFNP+P  +    D
Sbjct: 275 YLRVAPRDFITFEYVMLGGINDSLADADHLAALVRREHVPCKFNLIPFNPFPQSDLEKPD 334

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQEMQ 381
           ++ ++ F   +   GY + +R  RG DI AACGQL    +  ++R  ++ +Q+ +
Sbjct: 335 REKVLAFCRRLNELGYVTTVRKTRGDDIDAACGQLAGEVRDRTRRAERLAQQKAE 389


>gi|160900454|ref|YP_001566036.1| radical SAM protein [Delftia acidovorans SPH-1]
 gi|160366038|gb|ABX37651.1| radical SAM enzyme, Cfr family [Delftia acidovorans SPH-1]
          Length = 397

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/356 (41%), Positives = 203/356 (57%), Gaps = 23/356 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ RG  DF  MSD+++ +R  L     I    ++ E +S DGT KWL  
Sbjct: 47  RFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKACAHITALPVLTEHVSADGTVKWLFD 106

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +GG   +E V+IPE  RGTLCVSSQ GC++ C FC TG Q   RNL+  EIL Q+
Sbjct: 107 -----VGGGDAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEILAQL 161

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L    G             R ISN+VMMGMGEPL N+  +  +L    D  G  
Sbjct: 162 WYAEHSLRKRLGT---------GGERVISNVVMMGMGEPLQNYTALVPALRAMLDDHGYG 212

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP I R+ ++  V +A+SLHA +++LR+ LVP+NRKYP+  L+DAC 
Sbjct: 213 LSRRRVTVSTSGVVPMIDRLSQDCAVAMAVSLHAPNDELRDPLVPLNRKYPIHELLDACE 272

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPWPGCEY 326
            Y   +    ITFEY ML G+ND P  A  LI++++         K NLIPFNP+P    
Sbjct: 273 RYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGRSWCKFNLIPFNPFPASGL 332

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQ 378
           L S    +  F+  +  +G  + +R  RG DI AACGQL    K  ++   ++ RQ
Sbjct: 333 LRSPAARVTEFASLLSNAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRAAERMARQ 388


>gi|121593579|ref|YP_985475.1| radical SAM protein [Acidovorax sp. JS42]
 gi|205829704|sp|A1W574|RLMN_ACISJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120605659|gb|ABM41399.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax sp. JS42]
          Length = 374

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/352 (43%), Positives = 205/352 (58%), Gaps = 25/352 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ RG  DF  MSD+++ +R  L     +   + + E +S DGT KWL  
Sbjct: 24  RFRATQLFRWIHQRGASDFDQMSDLAKSLREKLRGCAHVAGLQAISEHVSADGTVKWLFD 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    +ETV+IPE  RGTLC+SSQ GC++ C FC TG Q   RNLT  EIL Q+
Sbjct: 84  -----VGDGNAVETVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEILAQL 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L    G  D E        R ISN+VMMGMGEPL N+  +  +L +  D  G  
Sbjct: 139 WYAEHALRQRRG--DGE--------RVISNVVMMGMGEPLQNYAALVPALRVMLDDHGYG 188

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP + R+ ++  V LA+SLHA ++ LR+ LVP+NRKYPL  L+ ACR
Sbjct: 189 LSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAPNDVLRDNLVPLNRKYPLHELLAACR 248

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKIL------KGIPAKINLIPFNPWPG 323
            Y  L +A R  ITFEY ML+G+ND P  A  LI ++       G+  K NLIPFNP+P 
Sbjct: 249 RY--LDHAPRDFITFEYCMLEGVNDQPEHARQLIDLVGRKAADGGVSCKFNLIPFNPFPA 306

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
                S    +  F++ +  +G  + +R  RG DI AACGQL    K   +V
Sbjct: 307 SGLRRSPPAAVTAFAQLLSDAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRV 358


>gi|222110300|ref|YP_002552564.1| radical sam enzyme, cfr family [Acidovorax ebreus TPSY]
 gi|221729744|gb|ACM32564.1| radical SAM enzyme, Cfr family [Acidovorax ebreus TPSY]
          Length = 383

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 149/350 (42%), Positives = 202/350 (57%), Gaps = 21/350 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ RG  DF  MSD+++ +R  L     +   + + E +S DGT KWL  
Sbjct: 33  RFRATQLFRWIHQRGASDFDQMSDLAKSLREKLRGCAHVAGLQAISEHVSADGTVKWLFD 92

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    +ETV+IPE  RGTLC+SSQ GC++ C FC TG Q   RNLT  EIL Q+
Sbjct: 93  -----VGDGNAVETVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEILAQL 147

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L    G  D E        R ISN+VMMGMGEPL N+  +  +L +  D  G  
Sbjct: 148 WYAEHALRQRRG--DGE--------RVISNVVMMGMGEPLQNYAALVPALRVMLDDHGYG 197

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP + R+ ++  V LA+SLHA ++ LR+ LVP+NRKYPL  L+ ACR
Sbjct: 198 LSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAPNDVLRDNLVPLNRKYPLHELLAACR 257

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL------KGIPAKINLIPFNPWPGCE 325
            Y   +    ITFEY ML+G+ND P  A  LI ++       G+  K NLIPFNP+P   
Sbjct: 258 RYLDHAPRDFITFEYCMLEGVNDQPEHARQLIDLVGRKAADGGVSCKFNLIPFNPFPASG 317

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
              S    +  F++ +  +G  + +R  RG DI AACGQL    K   +V
Sbjct: 318 LRRSPPAAVTAFAQLLSDAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRV 367


>gi|213621172|ref|ZP_03373955.1| hypothetical protein SentesTyp_28162 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 315

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 150/328 (45%), Positives = 196/328 (59%), Gaps = 18/328 (5%)

Query: 40  KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG 99
           KW+Y     +F  M+DI++ +R  L +   I  PE+V+E+ S DGT KW +        G
Sbjct: 1   KWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------G 54

Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159
              +ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV  A  ++G
Sbjct: 55  DQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG 114

Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
                  + G       R I+N+VMMGMGEPL N  NV  ++ I  D  G   SKRR+TL
Sbjct: 115 ----AAKVTGQ------RPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTL 164

Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           STSG VP + ++G+ I V LAISLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA
Sbjct: 165 STSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNA 224

Query: 280 R--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
              R+T EYVML  +ND    A  L ++LK  P KINLIP+NP+PG  Y  S    I  F
Sbjct: 225 NQGRVTIEYVMLDHVNDGTEHAHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRF 284

Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQL 365
           S+ +   G+++ +R  RG DI AACGQL
Sbjct: 285 SKVLMSYGFTTIVRKTRGDDIDAACGQL 312


>gi|297568774|ref|YP_003690118.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2]
 gi|296924689|gb|ADH85499.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2]
          Length = 354

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 153/337 (45%), Positives = 206/337 (61%), Gaps = 22/337 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH--FSIIYPEIVDEKISCDGTRKWLL 90
            R  QI+ WI+     DF  M+DI++ VR LL +    S + P+ V+   S DGT    +
Sbjct: 28  FRARQIFAWIHRPDFTDFSQMTDIAKHVRSLLAEKAFLSRLEPDKVES--SQDGT----V 81

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
           +F  R   G + IE+V IPE  R TLCVSSQVGC++ C FC T T    RNL A EI+ Q
Sbjct: 82  KFAFRLADGQL-IESVLIPEDDRYTLCVSSQVGCAMGCRFCLTATMGFKRNLEAAEIVGQ 140

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRK--ISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           V  A   L   PG          + G K  I+N+V MGMGEPL NFD++ +++ I  +  
Sbjct: 141 VDAALRWLLARPG----------ATGEKTRINNLVFMGMGEPLLNFDHLLRAIKILMEQR 190

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           G  FS RRIT+ST G VP +  +GE++ V LA+SLHA  ND+R+ L+PIN+KYPLE L+ 
Sbjct: 191 GHDFSGRRITVSTCGIVPKMKELGEQVPVNLAVSLHAADNDIRDQLMPINKKYPLEQLLR 250

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           ACR YP L   RRI  EYVM+K +NDS   A  L+K L GI  KIN++P+N  P   Y  
Sbjct: 251 ACREYP-LPPRRRIMIEYVMIKDLNDSVAQARLLVKKLHGIRCKINILPYNENPDSPYQA 309

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            D++ +  F + ++R+G+++ +R  RG DI AACGQL
Sbjct: 310 PDEETVENFRQILRRAGHTTLLRQSRGADISAACGQL 346


>gi|299530509|ref|ZP_07043929.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
 gi|298721485|gb|EFI62422.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
          Length = 369

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 144/339 (42%), Positives = 196/339 (57%), Gaps = 20/339 (5%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ RG  DF  M+D+++ +R  L     I    +V E +S DGT KWL  
Sbjct: 20  RFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAHITALPVVTEHVSADGTVKWLFD 79

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    +E+V+IPE  RGTLCVSSQ GC++ C FC TG Q   RNL   EIL Q+
Sbjct: 80  -----VGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLNTGEILAQL 134

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L    G ED          R ISN+VMMGMGEPL N+  +  +L +  D  G  
Sbjct: 135 WYAEHSLRKRFGTED----------RIISNVVMMGMGEPLQNYSALVPALRVMLDDHGYG 184

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP + R+ ++  V LA+SLHA ++ LR+ LVP+N+KYP+  L+DAC 
Sbjct: 185 LSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDPLRDNLVPLNKKYPIAELLDACE 244

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPWPGCEY 326
            Y   +    ITFEY ML G+ND    A  LI++++         K NLIPFNP+P    
Sbjct: 245 RYLEFAPRDFITFEYCMLDGVNDQLEHARQLIELVRARGDGKSWCKFNLIPFNPFPASGL 304

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L S    +  F+  +  +G  + +R  RG DI AACGQL
Sbjct: 305 LRSPSARVTEFATLLSNAGIVTTVRKTRGDDIDAACGQL 343


>gi|86158056|ref|YP_464841.1| hypothetical protein Adeh_1631 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|123750314|sp|Q2IIC5|RLMN_ANADE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|85774567|gb|ABC81404.1| 23S rRNA m(2)A-2503 methyltransferase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 372

 Score =  269 bits (688), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 139/335 (41%), Positives = 202/335 (60%), Gaps = 15/335 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+++W+++RG    + M+D+ + +R  L +   +   E   E+ S DGT KW  R 
Sbjct: 31  FRARQVYRWLHLRGAASLEEMTDVPRALRERLAEGTRLTTLERATEQRSADGTIKWTWRT 90

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     +E+VY+PE  R TLCVS+QVGC++ C+FC TGT  L RNL   EI+ QV 
Sbjct: 91  RDGKL-----VESVYLPETDRKTLCVSTQVGCAVGCTFCMTGTMGLARNLEPGEIVDQVH 145

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A   L +    E           R ++N+V MGMGEPL N+ ++K +L +     G +F
Sbjct: 146 RANRRLIELGEGEGP---------RPLTNLVFMGMGEPLANYRSLKVALDLLLSEDGPNF 196

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S R +T+STSG VP + R+GEE  V LA+SL+A ++  R+ ++PINR+YPL  L+ ACR 
Sbjct: 197 SHRHVTVSTSGLVPVMRRLGEETQVKLAVSLNATTDAQRDAIMPINRRYPLAELLRACRE 256

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           +P +   RRITFEYVML G+ND+P DA  L ++L+GIPAK+NLIP+N  PG  +      
Sbjct: 257 FP-MKQGRRITFEYVMLGGVNDAPEDAERLARLLRGIPAKVNLIPYNENPGLGFAAPAPG 315

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +  F + +     ++ +R  RG DI AACGQL +
Sbjct: 316 AVERFRDLLVARNVTAVVRKNRGTDIAAACGQLAA 350


>gi|89072699|ref|ZP_01159264.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34]
 gi|89051519|gb|EAR56973.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34]
          Length = 373

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 146/336 (43%), Positives = 197/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI KWIY  G  DF  M++I++++R  L +   I  P + + + S DGT KW +R 
Sbjct: 29  FRADQIMKWIYHFGCDDFDQMTNINKKLREKLKRVAEIRAPHVSEAQYSTDGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIP++ R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPDEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+NIVMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAKEVG-----------IQKDTGRRPITNIVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++ + I V LAISLHA +++LR+ ++PIN ++ +E  +D  R
Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIDTIDVALAISLHAPTDELRSQIMPINDRWNIEAFLDVVR 251

Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   +NA   R+T EYV+L  +ND    A  L K+LK  PAKINLIPFNP+PG  Y   
Sbjct: 252 RYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLAKVLKDTPAKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + +    ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACGQL 347


>gi|121607087|ref|YP_994894.1| radical SAM protein [Verminephrobacter eiseniae EF01-2]
 gi|205829923|sp|A1WE19|RLMN_VEREI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|121551727|gb|ABM55876.1| radical SAM enzyme, Cfr family [Verminephrobacter eiseniae EF01-2]
          Length = 391

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 152/390 (38%), Positives = 222/390 (56%), Gaps = 32/390 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +   +L+   R+ L +   ++G      R R +Q+++WI+ RG  DF  MSD+++ +R  
Sbjct: 1   MSTTNLLEFDRDGLADFCARLG----EKRFRATQLFRWIHQRGASDFDAMSDLARALRDK 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L     +  P ++  + S DG+ KWL       +G    +E V+IPE  RGTLCVSSQ G
Sbjct: 57  LKGCARVQAPPVISGQASADGSVKWLFD-----VGAGNAVEAVFIPEDERGTLCVSSQAG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TG Q   RNL++ EI+ Q+  A   L      ED          R ISN+V
Sbjct: 112 CAVGCRFCSTGHQGFSRNLSSGEIIAQLWFAEHALRRRLKTED----------RVISNLV 161

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N   +  +L +  D  G   S+RR+T+STSG VP I R+  +  V LA+SL
Sbjct: 162 MMGMGEPLQNLAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLARDCPVALAVSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301
           HA ++ LR+ LVP+NRKYP++ L+ AC+ Y  L++A R  ITFEY ML G+ND    A  
Sbjct: 222 HAPNDALRDQLVPLNRKYPIDELLQACKRY--LAHAPRDFITFEYCMLDGVNDQIGHARQ 279

Query: 302 LIKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L++++    I  K NLIPFNP+P    L S    I+ F++ +  +G  + +R  RG DI 
Sbjct: 280 LVELVGRAAIRCKFNLIPFNPFPASGLLRSAHDQILAFAQVLGAAGIVTTVRKTRGDDIA 339

Query: 360 AACGQLKS-------LSKRIPKVPRQEMQI 382
           AACGQL         +++R+ K    ++Q+
Sbjct: 340 AACGQLAGDVRDRTRVAERMAKQRTMQLQL 369


>gi|293604539|ref|ZP_06686944.1| cfr family radical SAM enzyme [Achromobacter piechaudii ATCC 43553]
 gi|292817120|gb|EFF76196.1| cfr family radical SAM enzyme [Achromobacter piechaudii ATCC 43553]
          Length = 384

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 143/333 (42%), Positives = 198/333 (59%), Gaps = 5/333 (1%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++ RG   F  M+D+++E R  L  +  I    +  E+ S DGTRKWL   
Sbjct: 29  FRARQLQRWMHQRGADSFDAMTDLAREFRSQLASNCRIEALPVNIEQRSADGTRKWLFD- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    IETV+IPE  RGTLC+SSQ GC + C FC TG Q   RNL   EI+ Q+ 
Sbjct: 88  ----VGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQGFNRNLKTSEIIGQLW 143

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A+ +L    G   +E        R ISN+VMMGMGEPL N+D V  +L +  D      
Sbjct: 144 WAKRVLEADIGTARLESAKATEDTRVISNVVMMGMGEPLLNYDQVLPALRLMLDDNAYGL 203

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ ++  V LA+SLHA ++ LR+ LVP+N+KYPL+ L+ AC  
Sbjct: 204 SRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVPLNKKYPLKELLAACER 263

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEY ML GIND+ + A  LI+I + +  K+NLIPFNP+P      S+  
Sbjct: 264 YLAFAPRDFITFEYCMLDGINDTDQHAKELIQIARQLRCKLNLIPFNPFPESGLKRSNSA 323

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +  F++ +  +G  + +R  RG DI AACGQL
Sbjct: 324 RVKVFAQRLMDAGIITTVRKTRGDDIDAACGQL 356


>gi|330446674|ref|ZP_08310326.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490865|dbj|GAA04823.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 373

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 147/336 (43%), Positives = 197/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI KWIY  G  DF  M++I++++R  L +   I  P + + + S DGT KW +R 
Sbjct: 29  FRADQIMKWIYHFGCDDFDQMTNINKKLREKLKRVAEIRAPYVSEAQHSADGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIP++ R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPDEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           V    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAKEIG-----------VQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++   I V LAISLHA +++LR+ ++PIN ++ +E  +DA R
Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHAPTDELRSQIMPINNRWDIETFLDAVR 251

Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   +NA   R+T EYV+L  +ND    A  L K+LK  PAKINLIPFNP+PG  Y   
Sbjct: 252 RYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLAKVLKDTPAKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + +    ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACGQL 347


>gi|114332136|ref|YP_748358.1| radical SAM enzyme, Cfr family protein [Nitrosomonas eutropha C91]
 gi|122313183|sp|Q0AE39|RLMN_NITEC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|114309150|gb|ABI60393.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosomonas eutropha C91]
          Length = 379

 Score =  268 bits (686), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 147/342 (42%), Positives = 205/342 (59%), Gaps = 10/342 (2%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+ +W++  G  +F  MSD+++  R  L +   +  PEI+ +  + DGTRKWLL   
Sbjct: 25  RARQLLRWVHRFGKTEFIEMSDLAKTFRQKLMERAVVHPPEIISDHTAGDGTRKWLL--- 81

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
               G    +E V+IPE +RGTLCVSSQVGC+L CSFC TG Q   RNL+  EI+ Q+  
Sbjct: 82  --STGTGNAVEMVFIPEPNRGTLCVSSQVGCALACSFCSTGRQGFNRNLSVAEIIGQLWW 139

Query: 154 ARSLLGDFPG---CEDIEGMVIPSVG--RKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           A  LL    G     D+  +   +    R ++N+VMMGMGEPL NF+NV  +L +     
Sbjct: 140 ANRLLEGQVGELFSPDVAQIRADNTDTRRPVTNVVMMGMGEPLANFENVVTALDLMLSDD 199

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+T+STSG VP + R+ E   V LA+SLHA ++ LR+ LVPIN+KYP+  L+ 
Sbjct: 200 AYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPNDALRDQLVPINKKYPIRDLLA 259

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC  Y   +    ITFEYVML+ +NDS   A  L+++++ IP K+NLIPFN + G  Y  
Sbjct: 260 ACERYLPAAPRDFITFEYVMLRDVNDSIALARELVQVVRNIPCKLNLIPFNTFAGSGYER 319

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S+   I  F + + ++G  + +R  RG DI AACGQL    K
Sbjct: 320 SNTDAIDNFRDVLMQAGIVTTVRKTRGDDIAAACGQLAGQVK 361


>gi|152980879|ref|YP_001353820.1| hypothetical protein mma_2130 [Janthinobacterium sp. Marseille]
 gi|205829777|sp|A6SZX3|RLMN_JANMA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|151280956|gb|ABR89366.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 387

 Score =  268 bits (686), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 139/335 (41%), Positives = 201/335 (60%), Gaps = 12/335 (3%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G  DF  M+D+++ +R  L     I  P ++ +  S DGTRKWL+  
Sbjct: 27  FRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLATRAIIAAPAVISDHTSADGTRKWLVD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLC+S+Q GC++ C FC TG Q   RNL+  E++ Q+ 
Sbjct: 86  ----VGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTGKQGFNRNLSVGEVIGQLW 141

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   L    G E       P   R+I+N+VMMGMGEPL N++    +L +  D      
Sbjct: 142 MAEFELRRTKGIEPG-----PKGERQITNVVMMGMGEPLLNYEPTVTALKLMLDDNAYGL 196

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+TLSTSG VP I ++ ++  V LA+SLHA ++ LR+ LVP+N+KYPL  L+ AC+ 
Sbjct: 197 SRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPLNKKYPLVELMAACKR 256

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSD 330
           Y   +    +TFEY ML G+NDS + A  LI +++   +P K NLIPFNP+P      S 
Sbjct: 257 YLEFAPRDFVTFEYCMLDGVNDSDQHARELIALVRQADVPCKFNLIPFNPFPESGLTRSH 316

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              I  F++ +  +G  + +R  RG DI AACGQL
Sbjct: 317 NPRIKAFAQVLMDAGIVTTVRKTRGDDIDAACGQL 351


>gi|171059552|ref|YP_001791901.1| radical SAM protein [Leptothrix cholodnii SP-6]
 gi|205829645|sp|B1XXL6|RLMN_LEPCP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|170776997|gb|ACB35136.1| radical SAM enzyme, Cfr family [Leptothrix cholodnii SP-6]
          Length = 393

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 151/347 (43%), Positives = 202/347 (58%), Gaps = 22/347 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R  Q+++WI+ RG  DF  MSD+++ +R  L     I    ++ E  S DGT KWL  
Sbjct: 25  RFRAVQLFRWIHQRGAADFGQMSDLAKSLRSKLADVACIAPLRVLSEHRSSDGTIKWLFD 84

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    +ETVYIPE  R TLC+SSQ GC++ C FC TG Q   RNL+  EIL Q+
Sbjct: 85  -----VGDGNAVETVYIPEDDRATLCISSQAGCAVGCRFCSTGHQGFSRNLSTAEILAQL 139

Query: 152 LLARSLLGDFPGCEDIEGMVI-------PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
             A   L      E  EG+ +       P+  R ISN+VMMGMGEPL N+  V  +L + 
Sbjct: 140 WYAEHSLRR----ERAEGVSVGARAATGPASERIISNVVMMGMGEPLQNYAAVLPALRVM 195

Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264
            D  G   S+RR+T+STSG VP I R+  ++ V LA+SLHA  + LR++LVP+NRKYPL 
Sbjct: 196 LDDHGYGLSRRRVTVSTSGVVPMIDRLAADLPVALAVSLHACDDALRDVLVPLNRKYPLA 255

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KG----IPAKINLIPF 318
            L+ AC+ Y   +    ITFEY ML G+NDS   A  L+K++  KG    +P K NLIPF
Sbjct: 256 ELLGACQAYLASAPRDFITFEYCMLDGVNDSDEQARALLKLVGDKGPVGRLPCKFNLIPF 315

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           NP+P      S  + +  F++ +   G  + +R  RG DI AACGQL
Sbjct: 316 NPFPESGLKRSGNERVQAFAQVLIDGGLVTTVRKTRGDDIDAACGQL 362


>gi|163856328|ref|YP_001630626.1| hypothetical protein Bpet2017 [Bordetella petrii DSM 12804]
 gi|205829671|sp|A9IK57|RLMN_BORPD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|163260056|emb|CAP42357.1| conserved hypothetical protein [Bordetella petrii]
          Length = 381

 Score =  268 bits (686), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 143/333 (42%), Positives = 198/333 (59%), Gaps = 6/333 (1%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+ RG   F  M+D++++ R  L Q   I    +  E+ S DGTRKWL   
Sbjct: 29  FRARQLQRWIHQRGADSFDAMTDLARDFRGQLAQQCRIQALPVNTEQRSSDGTRKWLFD- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    IETV+IPE  RGTLCVSSQ GC++ C FC TG Q   RNLT+ EI+ Q+ 
Sbjct: 88  ----VGQGNAIETVFIPEDDRGTLCVSSQAGCAVNCRFCSTGHQGFNRNLTSSEIIGQLW 143

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A+ +L    G   + G       R +SN+VMMGMGEPL N+D +  +L +  D      
Sbjct: 144 WAKRVLEADAGTARLGGAGNDDT-RVVSNVVMMGMGEPLLNYDQLLPALRLMLDDNAYGL 202

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+  +  V LA+SLHA ++ LR+ LVP+N+KYPL  L+ AC  
Sbjct: 203 SRRRVTVSTSGVVPMMDRLSRDCPVALAVSLHAPTDALRDELVPLNKKYPLAELLAACER 262

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEY ML GIND+ + A  LI++ + +  K+NLIPFNP+P      S   
Sbjct: 263 YLASAPRDFITFEYCMLDGINDTDQHARALIQVARQVRCKLNLIPFNPFPASGLKRSPSA 322

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +  F++ +  +G  + +R  RG DI AACGQL
Sbjct: 323 RVKVFAQRLMDAGIVTTVRKTRGDDIDAACGQL 355


>gi|91788473|ref|YP_549425.1| hypothetical protein Bpro_2611 [Polaromonas sp. JS666]
 gi|123164823|sp|Q12AB5|RLMN_POLSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|91697698|gb|ABE44527.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas sp. JS666]
          Length = 382

 Score =  268 bits (685), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 141/339 (41%), Positives = 196/339 (57%), Gaps = 20/339 (5%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ +G  DF  M+D+++ +R  L     I  P++V    S DGT KWL  
Sbjct: 24  RFRATQLFRWIHQKGASDFGQMTDLARSLREKLAGSAHIQGPKVVSRHDSADGTIKWLFD 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    IE V+IPE  RGTLC+SSQ GC++ C FC TG Q   RNLT  EI+ Q+
Sbjct: 84  -----VGAGDVIEAVFIPETDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVSQL 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L    G ++          R ISN+VMMGMGEPL N+  +  +L +  D  G  
Sbjct: 139 WFAEHFLRQHLGRQE----------RVISNVVMMGMGEPLQNYSQLVPALRVMLDDHGYG 188

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP I R+ ++  V LA+SLHA  + LR+ LVP+N+KYP+  L+ AC 
Sbjct: 189 LSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQDALRDSLVPLNKKYPIAELLQACT 248

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGCEY 326
            Y   +    ITFEY ML G+ND P  A  L+ +++     G+  K NLIPFNP+P    
Sbjct: 249 RYQASAPRDFITFEYCMLDGVNDQPEHARQLVALMQNHSAGGLSCKFNLIPFNPFPASGL 308

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             S    +  F++ +  +G  + +R  RG DI AACGQL
Sbjct: 309 KRSAMPQVAAFAKILMDAGIVTTVRKTRGDDIDAACGQL 347


>gi|262274790|ref|ZP_06052601.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae
           CIP 101886]
 gi|262221353|gb|EEY72667.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae
           CIP 101886]
          Length = 373

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 147/336 (43%), Positives = 197/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI KW+Y  G+ DF  MS+I++ +R  L     I  PE+   + S DGT KW +R 
Sbjct: 29  FRADQIMKWMYHFGVDDFDQMSNINKVLREKLKARCEIRAPEVSAAQYSADGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GNQDVETVYIPEDDRATLCVSSQVGCALDCKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           V    GR+ I+N+VMMGMGEPL N  N+  +L++  D +G  
Sbjct: 143 RAAKEIG-----------VEKETGRRPITNVVMMGMGEPLLNMKNLIPALNLMLDDLGYG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA +++LR+ ++PIN +Y +E  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGKIDVALAISLHAPNDELRSQIMPINDRYDIETFLASVR 251

Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA   R+T EY++L  +ND    A  L ++LK  PAKINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGRVTVEYILLDHVNDDMEHARQLAELLKDTPAKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  Y+  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYDYTVIVRKTRGDDIDAACGQL 347


>gi|118602407|ref|YP_903622.1| radical SAM protein [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|205829871|sp|A1AW44|RLMN_RUTMC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118567346|gb|ABL02151.1| 23S rRNA m(2)A-2503 methyltransferase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 356

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 151/363 (41%), Positives = 204/363 (56%), Gaps = 24/363 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K++L+   +  L +  + +G        RT QI +WIY     DF+ M + S+ +R  
Sbjct: 1   MNKKNLLSFNQNALNDFFVGLGEKP----YRTKQIMQWIYKDHEFDFEKMLNFSKSLRDE 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L++   +    +V +    DG  KW+L      +     IE +YIPEK+RGTLC+SSQVG
Sbjct: 57  LSKVVCVELLRVVKQNFILDGVIKWVL-----ALDKNNHIEMIYIPEKNRGTLCISSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C+FC TG Q   +NLT  EI+ QVL+A   L               S  ++ISN+V
Sbjct: 112 CGLACTFCSTGMQGFNKNLTTAEIIAQVLIASRYLN--------------SKTKRISNVV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N   V  +  +  D +    S+R++T+STSG VP + R+ E   V LA+SL
Sbjct: 158 FMGMGEPLLNEHAVYNACDLLLDDLAFGLSRRKVTISTSGVVPAMLRMSERTPVSLAVSL 217

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNL 302
           HA  + LRN LVPIN+KY LE L+ AC+ Y    +  R I FEYVMLKG+NDS   A  L
Sbjct: 218 HASDDHLRNELVPINQKYSLEELLKACKVYLQAGTQKRHILFEYVMLKGVNDSIEHANKL 277

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K+LKGI AKINLIPFN +   +Y  S  + I  F   +   G  +  R  RG DI  AC
Sbjct: 278 VKLLKGISAKINLIPFNSFEKTQYQTSSAQTIEKFQNILYHQGIRTMTRRTRGEDIGGAC 337

Query: 363 GQL 365
           GQL
Sbjct: 338 GQL 340


>gi|332527850|ref|ZP_08403887.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2]
 gi|332112427|gb|EGJ12220.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2]
          Length = 372

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 145/336 (43%), Positives = 198/336 (58%), Gaps = 19/336 (5%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R  Q+++WI+ +G  DF  MSD+++ +R  L     +    ++ E +S DGT KWL  
Sbjct: 24  RFRAVQLFRWIHQKGESDFDKMSDLAKSLRGKLAGAAVVESLPVISEHVSADGTTKWLFD 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +GG   +ETVYIPE  RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+
Sbjct: 84  -----VGGGNAVETVYIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEIIAQL 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L              P   R I N+VMMGMGEPL N+  V  +L +  D  G  
Sbjct: 139 RYAEHRLRG------------PDGQRVIDNVVMMGMGEPLQNYAAVVPALRVMLDDHGYG 186

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG V  I R+ E+  V LA+SLHA  + LR++LVPINRK  +E L+DAC 
Sbjct: 187 LSRRRVTVSTSGMVAMIDRLREDCPVALAVSLHAPDDALRDMLVPINRKDGIEALLDACL 246

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGCEYLCS 329
            Y   +    ITFEY ML G+ND+P  A  L+ ++  + +P K NLIPFNP+P      S
Sbjct: 247 RYVEAAPRDFITFEYCMLDGVNDAPEQAQQLVHLVRRRRVPCKFNLIPFNPFPESGLKRS 306

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            ++ +  F++ ++ +G  + IR  RG DI AACGQL
Sbjct: 307 PRERVTAFAKVLQDAGIVTTIRKVRGDDIDAACGQL 342


>gi|71892305|ref|YP_278039.1| putative pyruvate formate lyase activating enzyme 2 [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|123761466|sp|Q492D9|RLMN_BLOPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|71796411|gb|AAZ41162.1| putative pyruvate formate lyase activating enzyme 2 [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 373

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 161/365 (44%), Positives = 210/365 (57%), Gaps = 18/365 (4%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
           + KK +L+ M +EEL     K+G        R+ QI +WIY     DF  M++IS+ ++ 
Sbjct: 10  YAKKVNLLNMNKEELLIFFDKLG----EKPFRSHQIMRWIYHYYCDDFNYMTNISKSLKE 65

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L Q   I  P I+ E++S DGT KW ++   +      +IETVYIPE  R TLCVSSQ+
Sbjct: 66  RLKQIAEIRAPIIIKEQLSSDGTIKWAMKIDEQ------QIETVYIPENKRTTLCVSSQI 119

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L CSFC T  Q   RNL   EI+ QV  A  L+ +      I+    P     I+NI
Sbjct: 120 GCPLGCSFCGTAQQGFNRNLNVSEIIGQVWRAAQLI-NLNKKIKIKNNRFP-----ITNI 173

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N  NV  ++ I  D  G   SKR ITLST+G VP I ++   I + LAIS
Sbjct: 174 VFMGMGEPLLNIVNVVSAIRIILDDFGFKLSKRHITLSTAGIVPGIEKLKNMIDIPLAIS 233

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYP--GLSNARRITFEYVMLKGINDSPRDAL 300
           LHA ++ +RN ++PIN+KY +  +++A R Y     SN  RIT EYV+LK IND    A 
Sbjct: 234 LHAPNDIIRNKIMPINKKYNINSVLEAARRYSMDTKSNHGRITIEYVLLKNINDDVLHAH 293

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L K L+GIP KINLIP+NP P   Y CS Q  +  F + + +    + IR  RG DI A
Sbjct: 294 QLAKQLQGIPCKINLIPWNPIPNIRYACSSQIRMRAFLKVLLKYNIVTIIRKIRGADINA 353

Query: 361 ACGQL 365
           ACGQL
Sbjct: 354 ACGQL 358


>gi|317403336|gb|EFV83849.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
           xylosoxidans C54]
          Length = 384

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/333 (42%), Positives = 195/333 (58%), Gaps = 5/333 (1%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++ RG   F  M+D++++ R  L     I    +  E+ S DGTRKWL   
Sbjct: 29  FRARQLQRWMHQRGADSFDAMTDLARDFRGQLASRCVIEALAVNTEQRSSDGTRKWLFD- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    IETV+IPE  RGTLC+SSQ GC + C FC TG Q   RNL   EI+ Q+ 
Sbjct: 88  ----VGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQGFNRNLKTSEIIGQLW 143

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A+ +L    G   +E        R ISN+VMMGMGEPL N+D V  +L +  D      
Sbjct: 144 WAKRVLEADIGTARLESARATDDTRVISNVVMMGMGEPLLNYDQVLPALRLMLDDNAYGL 203

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP + R+ ++  V LA+SLHA ++ LR+ LVP+N+KYPL+ L+ AC  
Sbjct: 204 SRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVPLNKKYPLKELLAACER 263

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    ITFEY ML GIND+ + A  LI I + I  K+NLIPFNP+P      S   
Sbjct: 264 YLAFAPRDFITFEYCMLDGINDTDQHARELIHIARQIRCKLNLIPFNPFPASGLKRSPSA 323

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +  F++ +  +G  + +R  RG DI AACGQL
Sbjct: 324 RVKVFAQRLMDAGIITTVRKTRGDDIDAACGQL 356


>gi|206890968|ref|YP_002247985.1| radical SAM enzyme, Cfr family [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742906|gb|ACI21963.1| radical SAM enzyme, Cfr family [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 342

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 157/364 (43%), Positives = 217/364 (59%), Gaps = 27/364 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L  +  +++E+ +L   +P      R+ QI +WIY + +     +++ S+ +R   +
Sbjct: 3   KQNLKELTTKQIEKIILDESLPL----YRSKQIVQWIYKKFVDSINDITEWSKSLRERFS 58

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + + I    + D++IS DGT K+L       +    +IE+V I +K R TLCVSSQVGC 
Sbjct: 59  EKYYIGRINLFDKRISIDGTIKFLWE-----LEDGEKIESVLISDKDRLTLCVSSQVGCM 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC TG   L RNL A EI+ Q +                  +I    RKI+NIV M
Sbjct: 114 LKCKFCLTGKIGLKRNLKAWEIVDQYIQV--------------SKIIQKENRKITNIVFM 159

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           GMGEPL NF+NV ++L    D   + FS  RITLST+G +P I  +  +   + LAISL+
Sbjct: 160 GMGEPLLNFENVVEALWRLKDL--ILFSPSRITLSTAGIIPAIKELPYKAPAIKLAISLN 217

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  N  R+ L+PIN+KYPL  LI   R YP L    RITFEY+++KGIN S +DA  L +
Sbjct: 218 ATDNKTRSYLMPINKKYPLHELIKTLRDYP-LKPRHRITFEYILIKGINCSEKDAYRLSE 276

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIP+KINLIPFNPW GCE+   +  +I+ F E +   GYS  IR  +G DILAACGQ
Sbjct: 277 LLKGIPSKINLIPFNPWEGCEFERPEDNEILNFQEILAARGYSVFIRKSKGTDILAACGQ 336

Query: 365 LKSL 368
           LK+L
Sbjct: 337 LKAL 340


>gi|333001958|gb|EGK21524.1| hypothetical protein SFK218_3513 [Shigella flexneri K-218]
          Length = 336

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 150/336 (44%), Positives = 200/336 (59%), Gaps = 19/336 (5%)

Query: 49  DFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI 108
           +F  M+DI++ +R  L +   I  PE+V+E+ S DGT KW +        G   +ETVYI
Sbjct: 8   NFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYI 61

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           PE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV  A  ++G       + 
Sbjct: 62  PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVT 117

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
           G       R I+N+VMMGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP +
Sbjct: 118 GQ------RPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPAL 171

Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEY 286
            ++G+ I V LAISLHA ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EY
Sbjct: 172 DKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEY 231

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346
           VML  +ND    A  L ++LK  P KINLIP+NP+P   Y  S    I  FS+ +   G+
Sbjct: 232 VMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPDAPYGRSSNSRIDRFSKVLMSYGF 291

Query: 347 SSPIRTPRGLDILAACGQLK-SLSKRIPKVPRQEMQ 381
           ++ +R  RG DI AACGQL   +  R  +  R+ MQ
Sbjct: 292 TTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 327


>gi|256830852|ref|YP_003159580.1| Cfr family radical SAM protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256580028|gb|ACU91164.1| radical SAM enzyme, Cfr family [Desulfomicrobium baculatum DSM
           4028]
          Length = 360

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 139/355 (39%), Positives = 214/355 (60%), Gaps = 22/355 (6%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           ELEEA+  +G    H   R  Q+W+W++ +G+R+F  M++++++ R  L + +++ +PE+
Sbjct: 11  ELEEAVQAMG----HQSFRARQLWQWLWRKGVREFSAMTNLARDFREQLMREWALDWPEV 66

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
            + + S DGT K LLR     +     +ETV IP+K R T C+S Q+GC + C+FC TG 
Sbjct: 67  HEVQTSSDGTVKLLLRLADGAL-----VETVLIPDKERYTQCLSCQIGCPMGCTFCSTGL 121

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
               RN+T  EI  QVL+AR  L                +G ++ N+V MGMGEPL N+D
Sbjct: 122 MGFSRNMTGGEIAAQVLVARDYLRAH------------GLGDEVKNLVYMGMGEPLTNWD 169

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255
            V++SL I S++ GL FS+RRITLST      +   G E   + AISLHA + ++R  L+
Sbjct: 170 EVRRSLQILSNAEGLEFSRRRITLSTCAIKGKMDVFGIEGLALPAISLHAPTQEIRESLM 229

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
           P   ++P+E LI A +    L    R+T EY+++KG+NDS + A  L+++L  +  KINL
Sbjct: 230 PGAARWPIEELIAALQGME-LKARERVTIEYILIKGVNDSLQHARQLVRLLSHLKCKINL 288

Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           I +NP PG EY      D++ F E +++ G++  +R  +G DI AACGQLK+ ++
Sbjct: 289 IAYNPGPGIEYAAPAPGDVLAFEELLRKKGFTVTLRKSKGQDIAAACGQLKTEAQ 343


>gi|33602154|ref|NP_889714.1| hypothetical protein BB3178 [Bordetella bronchiseptica RB50]
 gi|81579923|sp|Q7WHM8|RLMN_BORBR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33576592|emb|CAE33670.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 382

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/365 (40%), Positives = 210/365 (57%), Gaps = 9/365 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  +++ +L+G+    L E + + G        R  Q+ +W++ RG   F  M+D++++ 
Sbjct: 1   MESVERVNLLGLDGAALSELVGQWGGKP----FRARQLQRWVHQRGADSFDAMTDLARDF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I    +  E+ S DGTRKWL       +G    IETV+IPE  RGTLC+SS
Sbjct: 57  RAQLARDCVIEALPVNTEQRSSDGTRKWLFD-----VGQGNAIETVFIPEDDRGTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG Q   RNL A EI+ Q+  A+ +L        + G       R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVIS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  +L +  D      S+RR+T+STSG VP + R+ ++  V LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+NRKYPL  L+ AC  Y   +    ITFEY ML GIND+ + A 
Sbjct: 232 VSLHAPNDALRDELVPLNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHAR 291

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI++ + +  K+NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI A
Sbjct: 292 ELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDA 351

Query: 361 ACGQL 365
           ACGQL
Sbjct: 352 ACGQL 356


>gi|148263644|ref|YP_001230350.1| ribosomal RNA large subunit methyltransferase N [Geobacter
           uraniireducens Rf4]
 gi|205829769|sp|A5GEC2|RLMN_GEOUR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146397144|gb|ABQ25777.1| 23S rRNA m(2)A-2503 methyltransferase [Geobacter uraniireducens
           Rf4]
          Length = 343

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 142/341 (41%), Positives = 205/341 (60%), Gaps = 29/341 (8%)

Query: 28  QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRK 87
           Q   R R  QI+KW+Y +  R+F  M+++S++ R  L +   I   +    + S DGT+K
Sbjct: 21  QGKERFRAKQIFKWLYQQDAREFADMTNLSKDFRQELEKTAWISNLDAEAVEASADGTKK 80

Query: 88  WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
           +L R     +     +E+V IP++ R TLC+SSQVGC++ C FC TGT KL RNLT  EI
Sbjct: 81  YLFR-----LADGNAVESVLIPDEDRTTLCISSQVGCAMGCEFCLTGTFKLTRNLTTAEI 135

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRK--ISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           + QV                      +V R+  + NIV MGMGEPL N  NV  +L I +
Sbjct: 136 VNQVC---------------------AVKRQEPVRNIVFMGMGEPLANLKNVVGALKILT 174

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
           D  G  FS R++T+STSG VP +A +G  + V LA+SL+A ++++R+ ++PINR+YPL+ 
Sbjct: 175 DPDGFQFSTRKVTVSTSGLVPEMAELGASVTVNLAVSLNATTDEVRDRIMPINRRYPLKE 234

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           L+ AC+ +P L + R IT EYVM++G+NDS  DA  L++++  IP+K+NLIPFN   GC 
Sbjct: 235 LLAACKAFP-LPSRRWITIEYVMIRGVNDSLDDAKRLVRLISNIPSKVNLIPFNEHDGCT 293

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +    Q  I  F + +     +   R+ RG DI AACGQLK
Sbjct: 294 FQAPTQDSIDKFHKFLLDKHVTVITRSSRGSDISAACGQLK 334


>gi|90579368|ref|ZP_01235178.1| hypothetical protein VAS14_06663 [Vibrio angustum S14]
 gi|90440201|gb|EAS65382.1| hypothetical protein VAS14_06663 [Vibrio angustum S14]
          Length = 373

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 147/336 (43%), Positives = 196/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI KWIY  G  DF  M++I++++R  L +   I  P + + + S DGT KW +R 
Sbjct: 29  FRADQIMKWIYHFGCDDFDQMTNINKKLREKLKRVAEIRAPYVSEAQHSTDGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIP++ R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPDEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           V    GR+ I+NIVMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAKEIG-----------VQKETGRRPITNIVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++   I V LAISLHA +++LR+ ++PIN ++ +E  +D  R
Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHAPTDELRSQIMPINDRWNIEAFLDVVR 251

Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   +NA   R+T EYV+L  +ND    A  L K+LK  PAKINLIPFNP+PG  Y   
Sbjct: 252 RYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLAKVLKDTPAKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + +    ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACGQL 347


>gi|31789377|gb|AAP58494.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
          Length = 413

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 155/371 (41%), Positives = 217/371 (58%), Gaps = 39/371 (10%)

Query: 14  REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73
           R ELE  L ++G P+ H R    QI++W+Y RGI DF  MSD+ +++R  L +   I  P
Sbjct: 56  RHELEHTLERLGHPRFHAR----QIFQWVYKRGITDFALMSDLGRDLRAQLAESCVITTP 111

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----------RGTLCVSSQV 122
            +  ++ S DGT K+LLR     +     IE+V+IP+++           R T CVS+QV
Sbjct: 112 VVERQERSQDGTVKFLLR-----LADGRHIESVFIPDETPAGPDGSPRAARITFCVSTQV 166

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           GC++ C+FC TG   + R+LTA EI  QV +LAR L           G +         N
Sbjct: 167 GCAMKCAFCLTGKMGIDRSLTAGEIAGQVRVLAREL-----------GFLETRF-----N 210

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           IV+MGMGEPL N++   K+L + +D  G + S RR+TLST G +P + R+  E +   LA
Sbjct: 211 IVLMGMGEPLHNYEETMKALRVLADEHGFAMSARRMTLSTVGVLPALERLATEPLMPNLA 270

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA + D R++LVPINRKY L+ L+DACR +P L    RITFEYV+L+ +ND+P DA 
Sbjct: 271 ISLHATTEDQRDLLVPINRKYGLKELLDACRRFP-LKRRERITFEYVLLREVNDTPEDAR 329

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+K+L GI  K+NL+P N   G  +       + +F+  +   G    +R  RG DI A
Sbjct: 330 RLVKLLHGIKGKVNLLPLNEAAGIPFERPSDDRVNSFARILADHGIPVSVRKSRGRDIRA 389

Query: 361 ACGQLKSLSKR 371
           ACGQL + S R
Sbjct: 390 ACGQLITESDR 400


>gi|260773387|ref|ZP_05882303.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           metschnikovii CIP 69.14]
 gi|260612526|gb|EEX37729.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           metschnikovii CIP 69.14]
          Length = 373

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 145/336 (43%), Positives = 197/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI KWIY  G  DF+ M++I++ +R  L  H  I  P + D + S DGT KW +R 
Sbjct: 29  FRADQIMKWIYHFGCDDFEKMTNINKNLREKLQTHCEIRAPYVSDAQYSSDGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE+ R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L +  D +G  
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGQIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++KG P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKGTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  IR  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347


>gi|239815175|ref|YP_002944085.1| radical SAM enzyme, Cfr family [Variovorax paradoxus S110]
 gi|239801752|gb|ACS18819.1| radical SAM enzyme, Cfr family [Variovorax paradoxus S110]
          Length = 382

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 142/338 (42%), Positives = 201/338 (59%), Gaps = 21/338 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ RG  DF  M+D+++ +R  L     +    ++ +  S DGT KWL  
Sbjct: 25  RFRATQLFRWIHQRGASDFAQMTDLAKSLREKLATTARVEALPVITQHESKDGTIKWLFD 84

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    +E V+IPE  RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+
Sbjct: 85  -----VGDGNAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEIVAQL 139

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L             +    R ISN+VMMGMGEPL N+  +  +L    D     
Sbjct: 140 WFAEHFLRKH----------LKRDERVISNVVMMGMGEPLQNYTALVPALRTMLDDNAYG 189

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP I R+G +  V +A+SLHA ++ LR+ LVP+NRKYP+  L++AC+
Sbjct: 190 LSRRRVTVSTSGVVPMIDRLGADCPVAMAVSLHAPNDALRDDLVPLNRKYPIAELLEACK 249

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYL 327
            Y  L +A R  ITFEY ML G+ND P  A  L+++++  G+  K NLIPFNP+P    L
Sbjct: 250 RY--LVHAPRDFITFEYCMLDGVNDQPEHARQLVELVRTHGVSCKFNLIPFNPFPASGLL 307

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            S Q  ++ F++ +  +G  + +R  RG DI AACGQL
Sbjct: 308 RSPQPRVLAFAKALSEAGLVTTVRKTRGDDIDAACGQL 345


>gi|124267188|ref|YP_001021192.1| hypothetical protein Mpe_A1999 [Methylibium petroleiphilum PM1]
 gi|205829632|sp|A2SHB8|RLMN_METPP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|124259963|gb|ABM94957.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 394

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 144/340 (42%), Positives = 202/340 (59%), Gaps = 21/340 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ +G  DF  MSD+++ +R  L     +    ++ E +S DGT KWL  
Sbjct: 25  RFRATQLFRWIHQKGQSDFAQMSDLAKSLREKLAGRAVVRPLAVLSEHVSADGTVKWLFD 84

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +GG   +ETV+IPE  RGTLC+SSQ GC++ C FC TG Q   RNL+  EI+ Q+
Sbjct: 85  -----VGGGNAVETVFIPENDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLSTGEIVAQL 139

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L    G  +          R ISN+VMMGMGEPL N+  +  +L +  D  G  
Sbjct: 140 WHAEHQLRARLGTTE----------RVISNVVMMGMGEPLQNYAALLPALRVMLDDHGYG 189

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP I R+ E+  V LA+SLHA ++ LR+ LVP+NRKYP+  L++AC+
Sbjct: 190 LSRRRVTVSTSGVVPMIDRLREDCPVALAVSLHAPTDALRDDLVPLNRKYPIAELLEACQ 249

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KG----IPAKINLIPFNPWPGCE 325
            Y   +    ITFEY ML G+NDS   A  L++++  +G    +P KINLIPFNP+P   
Sbjct: 250 RYLEAAPRDFITFEYCMLDGVNDSEAQARELLRLVGERGPVGRVPCKINLIPFNPFPASG 309

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              S    +  F++ +   G  + +R  RG DI AACGQL
Sbjct: 310 LTRSSVARVQAFAQLLVDGGLVTTVRRTRGDDIDAACGQL 349


>gi|33593205|ref|NP_880849.1| hypothetical protein BP2201 [Bordetella pertussis Tohama I]
 gi|81578506|sp|Q7VWK8|RLMN_BORPE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33563580|emb|CAE42479.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332382616|gb|AEE67463.1| hypothetical protein BPTD_2167 [Bordetella pertussis CS]
          Length = 382

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 147/365 (40%), Positives = 210/365 (57%), Gaps = 9/365 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  +++ +L+G+    L E + + G        R  Q+ +W++ RG   F  M+D++++ 
Sbjct: 1   MEAVERVNLLGLDGAALSELVGQWGGKP----FRARQLQRWVHQRGADSFDAMTDLARDF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I    +  E+ S DGTRKWL       +G    IETV+IPE  RGTLC+SS
Sbjct: 57  RAQLARDCVIEALPVNTEQRSSDGTRKWLFD-----VGQGNAIETVFIPEDDRGTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG Q   RNL A EI+ Q+  A+ +L        + G       R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVIS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  +L +  D      S+RR+T+STSG VP + R+ ++  V LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL  L+ AC  Y   +    ITFEY ML GIND+ + A 
Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHAR 291

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI++ + +  K+NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI A
Sbjct: 292 ELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDA 351

Query: 361 ACGQL 365
           ACGQL
Sbjct: 352 ACGQL 356


>gi|33597413|ref|NP_885056.1| hypothetical protein BPP2857 [Bordetella parapertussis 12822]
 gi|81579190|sp|Q7W6P5|RLMN_BORPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33573840|emb|CAE38149.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 382

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 147/365 (40%), Positives = 210/365 (57%), Gaps = 9/365 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  +++ +L+G+    L E + + G        R  Q+ +W++ RG   F  M+D++++ 
Sbjct: 1   MESVERVNLLGLDGAALSELVGQWGGKP----FRARQLQRWVHQRGADSFDAMTDLARDF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I    +  E+ S DGTRKWL       +G    IETV+IPE  RGTLC+SS
Sbjct: 57  RAQLARDCVIEALPVNTEQRSSDGTRKWLFD-----VGQGNAIETVFIPEDDRGTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG Q   RNL A EI+ Q+  A+ +L        + G       R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVIS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  +L +  D      S+RR+T+STSG VP + R+ ++  + LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPLALA 231

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+NRKYPL  L+ AC  Y   +    ITFEY ML GIND+ + A 
Sbjct: 232 VSLHAPNDALRDELVPLNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHAR 291

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI++ + +  K+NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI A
Sbjct: 292 ELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDA 351

Query: 361 ACGQL 365
           ACGQL
Sbjct: 352 ACGQL 356


>gi|320157276|ref|YP_004189655.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
           MO6-24/O]
 gi|326423711|ref|NP_759425.2| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
           CMCP6]
 gi|319932588|gb|ADV87452.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
           MO6-24/O]
 gi|319999069|gb|AAO08952.2| Ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
           CMCP6]
          Length = 374

 Score =  265 bits (678), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 143/336 (42%), Positives = 198/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ DF  M++I++++R  L Q   I+ P + + + S DGT KW +R 
Sbjct: 29  FRADQVMKWIYHFGVDDFDNMTNINKQLREKLKQKCEIVAPVVSEAQHSSDGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE+ R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREVG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  IR  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347


>gi|37678948|ref|NP_933557.1| hypothetical protein VV0764 [Vibrio vulnificus YJ016]
 gi|81758246|sp|Q7MNF3|RLMN_VIBVY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|37197690|dbj|BAC93528.1| predicted Fe-S-cluster redox enzyme [Vibrio vulnificus YJ016]
          Length = 374

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 143/336 (42%), Positives = 198/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ DF  M++I++++R  L Q   I+ P + + + S DGT KW +R 
Sbjct: 29  FRADQVMKWIYHFGVDDFDNMTNINKQLREKLKQKCEIVAPVVSEAQHSSDGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE+ R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREVG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  IR  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347


>gi|81587943|sp|Q8DEZ6|RLMN_VIBVU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 374

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 143/336 (42%), Positives = 198/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ DF  M++I++++R  L Q   I+ P + + + S DGT KW +R 
Sbjct: 29  FRADQVMKWIYHFGVDDFDNMTNINKQLREKLKQKCEIVAPVVSEAQHSSDGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE+ R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREVG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  IR  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347


>gi|323143782|ref|ZP_08078450.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT
           12066]
 gi|322416495|gb|EFY07161.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT
           12066]
          Length = 357

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/335 (43%), Positives = 200/335 (59%), Gaps = 17/335 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +Q  KWIY  G+ DF  M++I +++R  L +   I  PEIV E+ S DGT KW L  
Sbjct: 20  FRATQFLKWIYQYGVTDFDLMTNIKKDLREKLKEIACIKAPEIVTEQRSSDGTVKWALD- 78

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               IG    +ETV IPE+ R TLC+S+QVGC + C+FC TG     RNL+  EI+ QV 
Sbjct: 79  ----IGDGQLVETVLIPEEGRNTLCISTQVGCPVKCAFCRTGASGFNRNLSVSEIIGQVW 134

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A S +G F   E+          + ISN+VMMGMGEPL N D V K   I  +    + 
Sbjct: 135 RAASRVG-FSQNEE---------QKPISNVVMMGMGEPLYNVDAVLKVTEILLNDNAFAL 184

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           SKRR+T+STSG  P I ++  ++ V LA+SLHA +++LR++LVP+N+KY +++++ + R+
Sbjct: 185 SKRRVTISTSGVAPIIDKIAGKVDVALALSLHAPNDELRDVLVPLNKKYKIDVVLKSVRN 244

Query: 273 YPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           Y   SNA   + T EYV+L  INDS   A  L ++LK  P KINLIPFNP    E+    
Sbjct: 245 YLSKSNANCGKATIEYVLLDHINDSTDQAEELARLLKDTPCKINLIPFNPHEQSEFKRPS 304

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              +  F + +   GY+   RT RG DI AACGQL
Sbjct: 305 NSRVDRFYKVLTGHGYTVMTRTTRGDDIAAACGQL 339


>gi|189426654|ref|YP_001953831.1| ribosomal RNA large subunit methyltransferase N [Geobacter lovleyi
           SZ]
 gi|189422913|gb|ACD97311.1| radical SAM enzyme, Cfr family [Geobacter lovleyi SZ]
          Length = 351

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/354 (40%), Positives = 212/354 (59%), Gaps = 32/354 (9%)

Query: 28  QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGT 85
           Q   R R +QI+KW+Y   +  F  M+++S+ +R  L +   I  + PE V+  +  DGT
Sbjct: 24  QGKERYRATQIFKWLYQHDVSSFDEMTNVSKALRAELVRTACISRLEPETVE--VGSDGT 81

Query: 86  RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145
           RK+L       +     +E+V IP++ R TLC+SSQ GC++ C+FC TGT  L RNLT  
Sbjct: 82  RKYLF-----MLEDGNAVESVIIPDEDRNTLCISSQAGCAMQCAFCLTGTFSLTRNLTTA 136

Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           EI+ Q+L  +          D+E          + NIVMMGMGEPL N DNV  +L I +
Sbjct: 137 EIVNQILAVQ---------RDVE----------VRNIVMMGMGEPLHNLDNVIPALQIMA 177

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
           +  GL  S RR+T+ST G VP + R+G E+ V LA+SL+A +++LR+ ++P+N+ YP+  
Sbjct: 178 EDNGLQLSSRRVTVSTCGLVPELERLGREVTVNLAVSLNATTDELRDRIMPVNKAYPIAT 237

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           L+ A ++YP L   R+IT EYV+L G+ND+P DA  L+++L  IP KINLIPFNP  G +
Sbjct: 238 LLAALKNYP-LPGRRKITIEYVLLGGLNDTPEDAKRLVRLLSDIPCKINLIPFNPHEGAD 296

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
           +    +  +  F + +    ++   R  RG DI AACGQLK    ++ + P QE
Sbjct: 297 FRPPSRAALDAFHKYLLDRHFTVITRDSRGSDISAACGQLKG---KLDRKPSQE 347


>gi|328953509|ref|YP_004370843.1| Ribosomal RNA large subunit methyltransferase N [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453833|gb|AEB09662.1| Ribosomal RNA large subunit methyltransferase N [Desulfobacca
           acetoxidans DSM 11109]
          Length = 350

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 155/344 (45%), Positives = 209/344 (60%), Gaps = 23/344 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KW++ +G  +F  M+DI +EVRHLL +   I    ++  + S DG+ K    F
Sbjct: 27  FRARQVQKWLF-KGATEFNAMTDIGKEVRHLLQEKSYISQLALLARRRSADGSEK----F 81

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G V IE+V IPE    TLC+SSQVGC+  C FC TG + L RNL+  EI+ QVL
Sbjct: 82  SFGLSDGEV-IESVLIPENDHYTLCLSSQVGCAQGCRFCLTGRRGLTRNLSPAEIINQVL 140

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            ARSL+G                 + ISN+V MGMGEPL NF N+ K+L+I     GL+F
Sbjct: 141 AARSLVGK---------------RQAISNLVFMGMGEPLDNFANLVKALTIILAPWGLNF 185

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S RR+T+ST G  P I  +G  I V LA+SL+A ++ LR+ L+P+NRKYPL  +I+ACR 
Sbjct: 186 SYRRVTVSTVGLAPLIPALGHAIRVNLAVSLNAPNDALRSQLMPVNRKYPLAQIIEACRA 245

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           +P L   RRITF YV+L+GIND+P  A  L ++L+G  AKINLIPFNP     +     +
Sbjct: 246 FP-LPPHRRITFCYVLLQGINDTPSHARELSRLLQGFRAKINLIPFNPDSCLPFKRPTPE 304

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR-IPKV 375
            ++ F + + +  Y++ IR  RG DI AACGQL    +R IP V
Sbjct: 305 AVLAFQDILIQKHYTTLIRESRGADISAACGQLAGEVQRDIPPV 348


>gi|258592798|emb|CBE69107.1| putative pyruvate formate lyase activating enzyme 2 (yfgB) [NC10
           bacterium 'Dutch sediment']
          Length = 372

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 153/364 (42%), Positives = 216/364 (59%), Gaps = 28/364 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L G+  EE+E  +   G P      R  Q++ WIY R    F  M+D+   +R  L 
Sbjct: 21  KIDLKGLSLEEMERVVSDHGEPV----YRGRQLFHWIYARDAHTFAEMTDLPIALRARLA 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +H +I     + ++IS DGTRK+LL           +IETV IP++ R T C+S+QVGC+
Sbjct: 77  EHTAIGALTPLAKEISRDGTRKYLL-----GCTDERQIETVLIPDERRLTACLSTQVGCA 131

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           L C+FC TG    VR+L + E++ QVL L R L                  G +I N+V+
Sbjct: 132 LACAFCLTGKMGFVRHLQSGEVVDQVLALQRDL----------------QPGERIGNLVL 175

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N+D   K+L+I S  MGL++  RRITLST G VP I R+G+  +GV LA+SL
Sbjct: 176 MGMGEPLHNYDATVKALTILSHPMGLAYPPRRITLSTVGLVPEIVRLGQSGLGVNLAVSL 235

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ LVPINR+YPL+ L+ A R YP L + RR+TFEYV++ G+ND   DA  L+
Sbjct: 236 HASTDELRDRLVPINRRYPLKELMVALRAYP-LPSRRRLTFEYVLIDGVNDRSEDARELV 294

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  K+NL+  N  P   +    Q+ +  F   ++ +   + IR  RGLDI AACG
Sbjct: 295 KLLRGLRCKVNLLSLNEAPAIPFRRPSQERVEMFQRILRSADILATIRESRGLDISAACG 354

Query: 364 QLKS 367
            L +
Sbjct: 355 LLAT 358


>gi|108757013|ref|YP_631737.1| radical SAM protein [Myxococcus xanthus DK 1622]
 gi|123074312|sp|Q1D6I6|RLMN2_MYXXD RecName: Full=Ribosomal RNA large subunit methyltransferase N 2;
           AltName: Full=23S rRNA m2A2503 methyltransferase 2
 gi|108460893|gb|ABF86078.1| radical SAM enzyme, Cfr family [Myxococcus xanthus DK 1622]
          Length = 378

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/336 (44%), Positives = 203/336 (60%), Gaps = 17/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91
            R  QI++W++ RG   F  M+D+S+ +R  L     I+ P + D E  S DGT K+  R
Sbjct: 47  FRAPQIYRWLHQRGATSFDEMTDLSKVLREKLRARAEIV-PLVKDCELRSTDGTIKY--R 103

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
           +  R       IE+VY+P + R TLCVS+QVGC++ C FC TGT  L RNLT  EI+ QV
Sbjct: 104 WKTR---DGRYIESVYMPTEDRRTLCVSTQVGCAMACGFCMTGTMGLKRNLTPSEIVAQV 160

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
                 +    G E +         R +SN+V MGMGEPL NF+N+K +LSI     G +
Sbjct: 161 HAVNREVRKNEGHETL---------RPLSNLVFMGMGEPLHNFENLKTALSILQSEDGPN 211

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           FS R IT+ST G VP I R G+E  V LAISL+A +++ R+  +P+NRK+ +  L+DACR
Sbjct: 212 FSHRHITVSTVGLVPMIERFGKETDVKLAISLNASTDEQRSKTMPVNRKWNIAALLDACR 271

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            +P L   RRITFEYV++KG ND+  DA  LI++LKGIP K+NLIP+N  PG  +  + +
Sbjct: 272 KFP-LRQGRRITFEYVLIKGFNDADEDAHRLIELLKGIPVKVNLIPYNENPGLGFHTTGE 330

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +    F   +     ++ IR  RG DI  ACGQL +
Sbjct: 331 ERAEEFRAILADGHVAAYIRRNRGRDIAGACGQLAN 366


>gi|220931837|ref|YP_002508745.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
 gi|219993147|gb|ACL69750.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
          Length = 349

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 152/367 (41%), Positives = 222/367 (60%), Gaps = 25/367 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           KE L  + R+EL     K G P      R SQ++ WIY  G+ +F  M+++   +R  L 
Sbjct: 4   KEDLKSLSRKELLMWFEKRGYPS----FRASQLFNWIYRNGVDEFSRMNNLPLVLREELE 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGC 124
           +   +   +IV++  + DGT K+L       +     IE+V+IP E SR ++C+SSQVGC
Sbjct: 60  EKSYLTKLKIVNKSKAEDGTVKYLWE-----LKDGETIESVFIPYEGSRNSVCISSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           SL C FC TG   L+RNLT  EI+ QVL + + +  D  G              ++SN+V
Sbjct: 115 SLGCKFCATGLTGLIRNLTPGEIVDQVLQIQKEISNDKYGSP------------RVSNVV 162

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
            MGMGEPL N  +V K++ I +DS GL+  KR+IT+STSG VP I  + ++ + ++LAIS
Sbjct: 163 FMGMGEPLANMKSVLKAIEIMNDSKGLNIGKRKITVSTSGLVPQIKELADKKLQIVLAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+A +N LR+ L+PINRK+PLE L++A R+Y  ++N RR+TFEYV+LKG NDSP  A  L
Sbjct: 223 LNAPNNALRDKLMPINRKFPLEKLLEAVRYYTEVTN-RRVTFEYVLLKGTNDSPEHAFQL 281

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           + +L  I   +NLIPFNP    E+    ++ +  F + +  +G  + +R  RG  I AAC
Sbjct: 282 VNLLSDIHGHVNLIPFNPVQETEFKRPSKETVNRFKDILINNGVETTVRQERGTRIEAAC 341

Query: 363 GQLKSLS 369
           GQL+ L+
Sbjct: 342 GQLRRLN 348


>gi|319794361|ref|YP_004156001.1| radical SAM protein [Variovorax paradoxus EPS]
 gi|315596824|gb|ADU37890.1| radical SAM enzyme, Cfr family [Variovorax paradoxus EPS]
          Length = 384

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 141/338 (41%), Positives = 199/338 (58%), Gaps = 21/338 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ RG  DF  M+D+++ +R  L     +    ++ +  S DGT KWL  
Sbjct: 25  RFRATQLFRWIHQRGASDFTQMTDLAKSLREKLATTARVEALPVLTQHESKDGTIKWLFD 84

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    +E V+IPE  RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+
Sbjct: 85  -----VGDGNAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEIVAQL 139

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L             +    R ISN+VMMGMGEPL N+  +  +L    D     
Sbjct: 140 WFAEHFLRKH----------LKRDERVISNVVMMGMGEPLQNYTALVPALRTMLDDNAYG 189

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP I R+G +  V +A+SLHA ++ LR+ LVP+NRKYP+  L++AC+
Sbjct: 190 LSRRRVTVSTSGVVPMIDRLGTDCAVAMAVSLHAPNDALRDDLVPLNRKYPIAELLEACK 249

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYL 327
            Y  L +A R  ITFEY ML G+ND P  A  L+++++   +  K NLIPFNP+P    L
Sbjct: 250 RY--LEHAPRDFITFEYCMLDGVNDQPEHARQLVELVRKHDVSCKFNLIPFNPFPASGLL 307

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            S Q  ++ F+  +  +G  + +R  RG DI AACGQL
Sbjct: 308 RSPQPRVLAFARTLSEAGLVTTVRKTRGDDIDAACGQL 345


>gi|269103278|ref|ZP_06155975.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163176|gb|EEZ41672.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 372

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 153/354 (43%), Positives = 198/354 (55%), Gaps = 31/354 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EELEE              R  QI KWIY  G  DF  M++I++++R  L     I  P 
Sbjct: 22  EELEEKAF-----------RADQIMKWIYHFGCDDFDQMTNINKKLREKLKVIAEIKAPT 70

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
           +   + S DGT KW +R       G  ++ETVYIP+  R TLCVSSQVGC+L C FC T 
Sbjct: 71  VSAAQYSKDGTIKWAMRV------GDQDVETVYIPDDDRATLCVSSQVGCALECKFCSTA 124

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCN 193
            Q   RNL   EI+ QV  A   +G           V    GR+ I+N+VMMGMGEPL N
Sbjct: 125 QQGFNRNLCVSEIIGQVWRAAKEIG-----------VQKETGRRPITNVVMMGMGEPLLN 173

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253
             N+  +L I  D +G   SKRR+T+STSG V  + ++   I V LAISLHA +++LR+ 
Sbjct: 174 MKNLLPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHAPTDELRSQ 233

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPA 311
           ++PIN ++ +E  +DA R Y   +NA   R+T EYV+L  IND    A  L K+LK  PA
Sbjct: 234 IMPINNRWNIEEFLDAVRRYVNSTNANRGRVTVEYVLLDHINDDMEHARQLAKVLKDTPA 293

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           KINLIPFNP+PG  Y       I  F + +     +  +R  RG DI AACGQL
Sbjct: 294 KINLIPFNPYPGSPYNKPSNSRIDRFMKTLMEYDITVTVRKTRGDDIDAACGQL 347


>gi|149190092|ref|ZP_01868369.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1]
 gi|148836122|gb|EDL53082.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1]
          Length = 374

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 145/336 (43%), Positives = 197/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G  DF+ M++I++++R  L +   I  P + + + S DGT KW +R 
Sbjct: 29  FRADQVMKWIYHFGCDDFEKMTNINKKLREKLIRLAEIKAPTVSEAQHSSDGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIP+  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPDDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREVG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLMPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  EI V LAISLHA ++ LR+ ++PIN ++ +E  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGEIDVALAISLHAPNDKLRSEIMPINDRWDIEDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L ++LK  PAKINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELLKDTPAKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  Y+  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFMKTLMQYDYTVTVRKTRGDDIDAACGQL 347


>gi|187478836|ref|YP_786860.1| hypothetical protein BAV2346 [Bordetella avium 197N]
 gi|123725044|sp|Q2KY87|RLMN_BORA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|115423422|emb|CAJ49956.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 382

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 142/337 (42%), Positives = 201/337 (59%), Gaps = 14/337 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++ R +  F  M+D++++ R  L++   I    +  E+ S DGTRKWL   
Sbjct: 29  FRARQLQRWVHQRSVDSFDAMTDLARDFRAQLSERAIIEALPVNIEQRSSDGTRKWLFD- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    IETV+IPE  RGTLC+SSQ GC + C FC TG Q   RNL   EI+ Q+ 
Sbjct: 88  ----VGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQGFNRNLRTSEIIGQLW 143

Query: 153 LARSLLGDFPGCEDIEGMVIPSVG----RKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            A+ +L       DI    + + G    R ISN+VMMGMGEPL N+D V  +L +  D  
Sbjct: 144 WAKRVLE-----ADIGSARLANAGAEDTRVISNVVMMGMGEPLLNYDQVLPALRLMLDDN 198

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           G   S+RR+T+STSG VP + R+ ++  V LA+SLHA ++ LR+ LVP+N+KYPL+ L+ 
Sbjct: 199 GYGLSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAPNDALRDDLVPLNKKYPLKELLA 258

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC  Y   +    ITFEY ML GIND+ + A  LI++ + +  K+NLIPFNP+P      
Sbjct: 259 ACERYLAHAPRDFITFEYCMLDGINDTDQHAKELIQLARQVRCKLNLIPFNPFPASGLKR 318

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S    +  F++ +  +G  + +R  RG DI AACGQL
Sbjct: 319 SAAPRVKVFAQRLMDAGIITTVRKTRGDDIDAACGQL 355


>gi|229505629|ref|ZP_04395139.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX
           330286]
 gi|229510699|ref|ZP_04400178.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           B33]
 gi|229517821|ref|ZP_04407265.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           RC9]
 gi|229608647|ref|YP_002879295.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           MJ-1236]
 gi|229344536|gb|EEO09510.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           RC9]
 gi|229350664|gb|EEO15605.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           B33]
 gi|229357852|gb|EEO22769.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX
           330286]
 gi|229371302|gb|ACQ61725.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           MJ-1236]
          Length = 377

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 145/336 (43%), Positives = 195/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G  DF  M++I++++R  L     I  P + + + S DGT KW +R 
Sbjct: 33  FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTIKWAMRV 92

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 93  ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 146

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 147 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 195

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ +E  ++  R
Sbjct: 196 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVR 255

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L ++LKG P KINLIPFNP+PG  Y   
Sbjct: 256 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKGTPCKINLIPFNPYPGSPYKKP 315

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  IR  RG DI AACGQL
Sbjct: 316 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 351


>gi|237747707|ref|ZP_04578187.1| ribosomal RNA large subunit methyltransferase N [Oxalobacter
           formigenes OXCC13]
 gi|229379069|gb|EEO29160.1| ribosomal RNA large subunit methyltransferase N [Oxalobacter
           formigenes OXCC13]
          Length = 387

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 145/339 (42%), Positives = 204/339 (60%), Gaps = 19/339 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G+ DF  M+D+++ +R  L     +  P+I+ + +S DGTRKWLL  
Sbjct: 28  FRAKQLQRWIHQFGVSDFAEMTDLAKSLRGKLELCAEVKAPDILKDTVSSDGTRKWLLD- 86

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    IETV+IPE +RGTLCVS+Q GC++ C FC TG Q   RNLT  EI+ Q+ 
Sbjct: 87  ----VGAGNAIETVFIPEDTRGTLCVSTQAGCAVNCLFCSTGKQGFSRNLTTAEIIGQLW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A   +    G  D +        R+ISN+VMMGMGEPL NFD    +L +  D      
Sbjct: 143 MAEFAVRRSKGLTDAKD------ERQISNVVMMGMGEPLFNFDASVSALKLMLDDNAYGL 196

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S+RR+T+STSG VP I R+ +E  V LA+SLHA ++ LR+ LVP+N+K+PL+ L+ AC+ 
Sbjct: 197 SRRRVTVSTSGVVPMIDRLAKECPVALAVSLHAPNDTLRDHLVPLNKKHPLKELMAACQR 256

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP----AKINLIPFN--PWPGCEY 326
           Y   +    ITFEY ML GIND+   A  L+K++K  P     K+NLIPFN    PG + 
Sbjct: 257 YLDYAPRDFITFEYCMLDGINDTDEHARELVKLVKHGPNPVSCKLNLIPFNSIAMPGLKR 316

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             S    + +F++ +  +G  + +R  RG DI AACG L
Sbjct: 317 --STDARVQSFAKILLDAGIVTTVRKARGEDIEAACGLL 353


>gi|121726066|ref|ZP_01679365.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|153216236|ref|ZP_01950336.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153800552|ref|ZP_01955138.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|153829401|ref|ZP_01982068.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|227080936|ref|YP_002809487.1| hypothetical protein VCM66_0715 [Vibrio cholerae M66-2]
 gi|229513104|ref|ZP_04402570.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           TMA 21]
 gi|229523420|ref|ZP_04412827.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM
           11079-80]
 gi|229525403|ref|ZP_04414808.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           bv. albensis VL426]
 gi|229530113|ref|ZP_04419503.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           12129(1)]
 gi|254225020|ref|ZP_04918634.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|254285475|ref|ZP_04960439.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|262192502|ref|ZP_06050653.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT
           5369-93]
 gi|297581156|ref|ZP_06943080.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298499110|ref|ZP_07008917.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757]
 gi|254807221|sp|C3LT10|RLMN_VIBCM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|121631548|gb|EAX63918.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124114381|gb|EAY33201.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124123841|gb|EAY42584.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|125622407|gb|EAZ50727.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|148875121|gb|EDL73256.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|150424337|gb|EDN16274.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227008824|gb|ACP05036.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|229333887|gb|EEN99373.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           12129(1)]
 gi|229338984|gb|EEO04001.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           bv. albensis VL426]
 gi|229339783|gb|EEO04798.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM
           11079-80]
 gi|229349997|gb|EEO14951.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           TMA 21]
 gi|262031661|gb|EEY50248.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT
           5369-93]
 gi|297534472|gb|EFH73309.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297543443|gb|EFH79493.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757]
 gi|327483542|gb|AEA77949.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           LMA3894-4]
          Length = 373

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 145/336 (43%), Positives = 195/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G  DF  M++I++++R  L     I  P + + + S DGT KW +R 
Sbjct: 29  FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ +E  ++  R
Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L ++LKG P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKGTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  IR  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347


>gi|15640776|ref|NP_230406.1| hypothetical protein VC0757 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591437|ref|ZP_01678715.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153817298|ref|ZP_01969965.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153822713|ref|ZP_01975380.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|153824544|ref|ZP_01977211.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|254847894|ref|ZP_05237244.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744563|ref|ZP_05418514.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera
           CIRS 101]
 gi|262161302|ref|ZP_06030413.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           INDRE 91/1]
 gi|81623203|sp|Q9KTX3|RLMN_VIBCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|9655203|gb|AAF93922.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546714|gb|EAX56891.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126512214|gb|EAZ74808.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126519744|gb|EAZ76967.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|149741762|gb|EDM55791.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|254843599|gb|EET22013.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255737594|gb|EET92988.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera
           CIRS 101]
 gi|262029052|gb|EEY47705.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           INDRE 91/1]
          Length = 373

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 145/336 (43%), Positives = 195/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G  DF  M++I++++R  L     I  P + + + S DGT KW +R 
Sbjct: 29  FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ +E  ++  R
Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L ++LKG P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKGTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  IR  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347


>gi|148979605|ref|ZP_01815610.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3]
 gi|145961690|gb|EDK26987.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3]
          Length = 380

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 139/336 (41%), Positives = 198/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KW+Y  G+ DF+ M++I++++R  L +   I+ P + + + S DGT KW +  
Sbjct: 29  FRADQVMKWMYHFGVDDFENMNNINKKLREKLQRRCEIVAPVVSEAQHSSDGTIKWAMSV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIP+  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ Q+ 
Sbjct: 89  ------GDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  SL I  D +G +
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLMPSLEIMLDDLGFA 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++ + I V LAISLHA +++LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHAPNDELRSQIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + +    Y+  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMEYDYTVTVRKTRGDDIDAACGQL 347


>gi|167470721|ref|ZP_02335425.1| radical SAM domain protein, Cfr family [Yersinia pestis FV-1]
          Length = 319

 Score =  262 bits (669), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 144/309 (46%), Positives = 186/309 (60%), Gaps = 20/309 (6%)

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           +R  L +   I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVS
Sbjct: 2   LRAKLQRVTEIRAPEVQKEQRSVDGTIKWAIKV------GDQQVETVYIPEADRATLCVS 55

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RK 178
           SQVGC+L C FC T  Q   RNL   EI+ QV  A  ++G            + S G R 
Sbjct: 56  SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRP 104

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           I+N+VMMGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V 
Sbjct: 105 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA 164

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSP 296
           LAISLHA ++D+R+ +VPINRKY +E  + A R Y     +N  R+T EYVML  INDS 
Sbjct: 165 LAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDST 224

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG 
Sbjct: 225 EQAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGD 284

Query: 357 DILAACGQL 365
           DI AACGQL
Sbjct: 285 DIDAACGQL 293


>gi|253701168|ref|YP_003022357.1| ribosomal RNA large subunit methyltransferase N [Geobacter sp. M21]
 gi|251776018|gb|ACT18599.1| radical SAM enzyme, Cfr family [Geobacter sp. M21]
          Length = 351

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 142/337 (42%), Positives = 207/337 (61%), Gaps = 29/337 (8%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ--HFSIIYPEIVDEKISCDGTRKWL 89
           R R  QI+KW+Y      F+ M+++S+E R +L +    S + PE+V+   S DGTRK+L
Sbjct: 25  RFRAKQIFKWLYQLDAGSFEEMTNVSKEFRSMLGEIAQISNLTPEVVE--ASEDGTRKYL 82

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
            R       G   +E+V IP++ R TLC+SSQVGC++ C+FC TG+  L RNLT  EI+ 
Sbjct: 83  FRL----FDGSA-VESVLIPDEGRNTLCISSQVGCAMGCAFCLTGSFGLSRNLTTAEIVN 137

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           QV   +    D P                +SNIV MGMGEPL N + V  ++ I +D  G
Sbjct: 138 QVCAVKR---DQP----------------VSNIVFMGMGEPLANLNGVIPAVQILTDPDG 178

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             FS R++T+STSG VP +A +G    V LA+SL+A ++++R+ ++P+NR+YPL  L+ A
Sbjct: 179 FQFSTRKVTVSTSGLVPEMAELGRGCTVNLAVSLNATTDEVRSRIMPVNRRYPLAELLAA 238

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           C+ +P L + R IT EYVM++ +NDS  DA  L++++  IP+K+NLIPFN   GC++ C 
Sbjct: 239 CKAFP-LPSRRWITMEYVMIRDLNDSLEDAKRLVRLISNIPSKVNLIPFNEHEGCDFKCP 297

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            Q+ I  F + +     +   R+ RG DI AACGQLK
Sbjct: 298 TQESIDRFHKYLLDKNVTVITRSSRGSDISAACGQLK 334


>gi|89901088|ref|YP_523559.1| hypothetical protein Rfer_2310 [Rhodoferax ferrireducens T118]
 gi|123397164|sp|Q21W25|RLMN_RHOFD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|89345825|gb|ABD70028.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
          Length = 382

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 140/349 (40%), Positives = 200/349 (57%), Gaps = 20/349 (5%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R  Q+++WI+ +G  +F  MSD+++ +R  L     +  P+++ + IS DGT KWL  
Sbjct: 24  RYRAVQLFRWIHQKGASNFDDMSDLAKSLREKLKVSAQVKAPDLISQHISSDGTIKWLFD 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +GG   +E V+IPE+ RGTLC+SSQ GC++ C FC TG Q   RNL   EI+ Q+
Sbjct: 84  -----VGGGDAVEAVFIPEEDRGTLCISSQAGCAMGCRFCSTGHQGFSRNLKTGEIIAQL 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A   L             +    R ISN+VMMGMGEPL N+  +  +L    D  G  
Sbjct: 139 WFAEHFLRKH----------LQRDERVISNVVMMGMGEPLQNYAELVPALRAMLDDHGYG 188

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RR+T+STSG VP + R+  +  V LA+SLHA ++ LR+ LVP+N+KY L  L++AC 
Sbjct: 189 LSRRRVTVSTSGVVPMMDRLARDCPVALAVSLHAPNDLLRDDLVPLNKKYSLAELLNACN 248

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGCEY 326
            Y   +    ITFEY ML+ +ND P  A  L+++++     G+  K NLIPFNP+P    
Sbjct: 249 RYLAYAPRDFITFEYCMLEDVNDQPEHAQQLVRLVQHYSSGGVWCKFNLIPFNPFPASGL 308

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
             S  + I  F++ +  +G  + IR  RG DI AACGQL    K   +V
Sbjct: 309 TRSTPERIQAFAKILSDAGIVTTIRKTRGDDIDAACGQLAGEVKDRTRV 357


>gi|262199015|ref|YP_003270224.1| radical SAM enzyme, Cfr family [Haliangium ochraceum DSM 14365]
 gi|262082362|gb|ACY18331.1| radical SAM enzyme, Cfr family [Haliangium ochraceum DSM 14365]
          Length = 378

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 147/347 (42%), Positives = 210/347 (60%), Gaps = 23/347 (6%)

Query: 22  LKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS 81
           L++G P    R R  QIW+W++  G+   + M+++ + +R LL +  ++    +   + S
Sbjct: 33  LELGQP----RYRGEQIWRWVHGAGVTRLEDMANLPRTLRELLAERTTLGTLRVDAAQTS 88

Query: 82  CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
            DGTRK  LR           IETV IP+  + T C+SSQVGC+L C FC T    L R+
Sbjct: 89  RDGTRKLRLR-----TRDGRAIETVLIPDGDKLTQCISSQVGCALDCDFCATAKLGLTRH 143

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L   EI+ QV   R+LL +          V P   R+I+N+V MGMGEPL N+ NV KSL
Sbjct: 144 LDPGEIVDQVYRGRALLAE----------VEPE--RRITNLVYMGMGEPLHNYANVVKSL 191

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRK 260
            + +  +G + S+RRIT+ST G VP I ++G E++   LAISL+A S+++R+ ++P+NRK
Sbjct: 192 RLLTSELGANLSQRRITVSTVGQVPGIEKLGREDVRPNLAISLNASSDEIRDRIMPVNRK 251

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           + +  L+ A R YP L   RR+TFEYV+L G+NDS  DA  L ++L+GIP K+N+IP+NP
Sbjct: 252 WNIARLLQAVRDYP-LERRRRVTFEYVLLAGVNDSMADAARLSRLLRGIPCKLNIIPWNP 310

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            PG  Y       +  F    KR G  + +RTPRG DI AACGQL +
Sbjct: 311 HPGAPYQRPSAHAVEAFQNEAKRLGLPTYLRTPRGDDIDAACGQLAA 357


>gi|156973378|ref|YP_001444285.1| hypothetical protein VIBHAR_01065 [Vibrio harveyi ATCC BAA-1116]
 gi|205829926|sp|A7MU39|RLMN_VIBHB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|156524972|gb|ABU70058.1| hypothetical protein VIBHAR_01065 [Vibrio harveyi ATCC BAA-1116]
          Length = 375

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 140/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ DF  M++I++++R  L     I  P + + + S DGT KW ++ 
Sbjct: 29  FRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREIG-----------LQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA +++LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDELRSQIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347


>gi|262165069|ref|ZP_06032806.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
           VM223]
 gi|262172172|ref|ZP_06039850.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
           MB-451]
 gi|261893248|gb|EEY39234.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
           MB-451]
 gi|262024785|gb|EEY43453.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
           VM223]
          Length = 373

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/336 (42%), Positives = 196/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G  DF  M++I++++R  L     I  P + + + S DGT KW +R 
Sbjct: 29  FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE+ R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA +++LR+ ++PIN ++ ++  +   R
Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++KG P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMKGTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  IR  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347


>gi|222056625|ref|YP_002538987.1| radical SAM enzyme, Cfr family [Geobacter sp. FRC-32]
 gi|221565914|gb|ACM21886.1| radical SAM enzyme, Cfr family [Geobacter sp. FRC-32]
          Length = 345

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/348 (40%), Positives = 204/348 (58%), Gaps = 28/348 (8%)

Query: 28  QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRK 87
           Q   R R  QI+KW+Y +    F  M+++S++ R  L +   I   E    + S DGT+K
Sbjct: 21  QGKERFRAKQIFKWLYQQNATSFAQMTNLSKDFRAELEKTARISNLEAEAVESSADGTKK 80

Query: 88  WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
           +L R     +     +E+V IP++ R TLC+SSQVGC++ C FC TGT +L RNLT  EI
Sbjct: 81  YLFR-----LSDGNAVESVLIPDEDRNTLCISSQVGCAMGCEFCLTGTFRLTRNLTTAEI 135

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
           + QV   +                       + NIV MGMGEPL N +NV  +L I +D 
Sbjct: 136 VNQVCAVKK-------------------NEPVRNIVFMGMGEPLANLENVIGALRILTDP 176

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
            G  FS R++TLST+G VP +A +G  + V LAIS++A ++++R+ ++P+NR+YPL+ L+
Sbjct: 177 DGFQFSTRKVTLSTAGLVPEMAELGAAVMVNLAISMNATTDEVRDRIMPVNRRYPLKELL 236

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
            AC+ +P L + R IT EYVM+KG+NDS  DA  L++++   P+K+NLIPFN   GC+  
Sbjct: 237 AACKAFP-LPSRRWITVEYVMIKGVNDSLDDAKRLVRLISTFPSKVNLIPFNEHEGCDLR 295

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
              Q  I  F + +     +   R+ RG DI AACGQLK    R+ KV
Sbjct: 296 TPTQDSIDRFHKFLLDKHVTVITRSSRGSDISAACGQLKG---RLDKV 340


>gi|163802471|ref|ZP_02196364.1| hypothetical protein 1103602000590_AND4_19477 [Vibrio sp. AND4]
 gi|159173772|gb|EDP58587.1| hypothetical protein AND4_19477 [Vibrio sp. AND4]
          Length = 375

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ DF  M++I++++R  L     I  P + + + S DGT KW ++ 
Sbjct: 29  FRADQVMKWIYHFGVDDFDNMTNINKKLREKLQYKCEIKAPTVAEAQHSSDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREIG-----------LQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA +++LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDELRSQIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  IND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHINDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347


>gi|258619955|ref|ZP_05714995.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258627187|ref|ZP_05721975.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580489|gb|EEW05450.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258587688|gb|EEW12397.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 396

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/336 (42%), Positives = 196/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G  DF  M++I++++R  L     I  P + + + S DGT KW +R 
Sbjct: 52  FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTIKWAMRV 111

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE+ R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 112 ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 165

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 166 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 214

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA +++LR+ ++PIN ++ ++  +   R
Sbjct: 215 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATVR 274

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++KG P KINLIPFNP+PG  Y   
Sbjct: 275 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMKGTPCKINLIPFNPYPGSPYKKP 334

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  IR  RG DI AACGQL
Sbjct: 335 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 370


>gi|254248069|ref|ZP_04941390.1| hypothetical protein BCPG_02893 [Burkholderia cenocepacia PC184]
 gi|124872845|gb|EAY64561.1| hypothetical protein BCPG_02893 [Burkholderia cenocepacia PC184]
          Length = 379

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 137/342 (40%), Positives = 199/342 (58%), Gaps = 16/342 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+     DF GM+D+++ +R  L    SI+ P+I  + +S DGTRKWL+  
Sbjct: 29  FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIVMPDIASDHVSTDGTRKWLID- 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+ 
Sbjct: 88  ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143

Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
           +A    R+ LG  PG             R ++N+          N+  V  ++ +  D  
Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVSDDEHERAALNYSAVVPAMRLMLDDN 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+KYPL  L+ 
Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKYPLRELMA 256

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC+ Y  ++    ITFEY ML G+ND+   A  L+ + + +P K NLIPFNP+P    + 
Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S  + I  F++ +  +G  + +R  RG DI AACGQL    K
Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358


>gi|153005041|ref|YP_001379366.1| radical SAM protein [Anaeromyxobacter sp. Fw109-5]
 gi|205829648|sp|A7HCD6|RLMN_ANADF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|152028614|gb|ABS26382.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. Fw109-5]
          Length = 377

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 143/338 (42%), Positives = 204/338 (60%), Gaps = 21/338 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W+  +G      ++D+ + +R  L +  ++   E   E+ S DGT KW  R 
Sbjct: 36  FRARQLHRWLQQKGAASLDELTDVPRALRAALAEATTLTTLERATEQRSVDGTIKWTWRT 95

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     +E+VY+PE  R TLCVSSQVGC++ C+FC TGT  L RNLT  EI+ QV 
Sbjct: 96  HDGKL-----VESVYMPEPDRRTLCVSSQVGCAVGCTFCLTGTMGLARNLTPGEIVEQVH 150

Query: 153 LARSL---LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
            A      LG+  G             R ++N+V MGMGEPL N+ ++K +L +     G
Sbjct: 151 RANRRIVELGEGQGP------------RPLTNLVFMGMGEPLANYRSLKVALDLLLSEDG 198

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
            +FS R +T+STSG VP I ++GEE  V LAISL+A ++  R+ L+PINR+YPL  L++A
Sbjct: 199 PNFSHRHVTVSTSGLVPMIRKLGEETPVKLAISLNATTDAQRDALMPINRRYPLAQLLEA 258

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           CR +P + N RRITFEYV+L G+NDS  DA+ L ++++GIP K+NLIP+N  PG  Y   
Sbjct: 259 CRSFP-IRNGRRITFEYVLLGGVNDSLEDAVRLARLVRGIPTKVNLIPYNANPGLPYRAP 317

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             + +V F E +     ++ +R  RG DI AACGQL +
Sbjct: 318 APERVVEFQETLAARNLTAVVRKNRGGDISAACGQLAA 355


>gi|90410870|ref|ZP_01218884.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK]
 gi|90328083|gb|EAS44394.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK]
          Length = 373

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 143/336 (42%), Positives = 195/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI KWIY  G  DF  M++I++++R  L +   I  P + + + S DGT KW +R 
Sbjct: 29  FRADQIMKWIYQFGCDDFDQMTNINKKLREKLKRVAEIRAPYVSEAQHSVDGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIP+  R TLCVSSQVGC+L C+FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPDGDRATLCVSSQVGCALACTFCSTAQQGFNRNLRVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAKEIG-----------IEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDIGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++   I V LAISLHA +++LR+ ++PIN ++ +   +++ R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGNIDVALAISLHAPTDELRSQIMPINDRFNIATFLESVR 251

Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA   R+T EYV+L  +ND    A  L  +LK  PAKINLIPFNP+PG  Y   
Sbjct: 252 RYVEQSNANRGRVTVEYVLLDHVNDDMEHARQLAVLLKDTPAKINLIPFNPYPGSPYRKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + +    ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACGQL 347


>gi|28897379|ref|NP_796984.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153838534|ref|ZP_01991201.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ3810]
 gi|260363554|ref|ZP_05776383.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus K5030]
 gi|260876339|ref|ZP_05888694.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AN-5034]
 gi|260898610|ref|ZP_05907106.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus Peru-466]
 gi|260899290|ref|ZP_05907685.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ4037]
 gi|81728415|sp|Q87S19|RLMN_VIBPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|28805591|dbj|BAC58868.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748049|gb|EDM58908.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ3810]
 gi|308086920|gb|EFO36615.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus Peru-466]
 gi|308092880|gb|EFO42575.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AN-5034]
 gi|308106603|gb|EFO44143.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ4037]
 gi|308113028|gb|EFO50568.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus K5030]
          Length = 375

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 140/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ DF  M++I++++R  L     I  P + + + S DGT KW ++ 
Sbjct: 29  FRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE+ R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREIG-----------LQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMGHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347


>gi|328472598|gb|EGF43461.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           parahaemolyticus 10329]
          Length = 375

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 140/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ DF  M++I++++R  L     I  P + + + S DGT KW ++ 
Sbjct: 29  FRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE+ R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREIG-----------LQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKETPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347


>gi|269962413|ref|ZP_06176763.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832909|gb|EEZ87018.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 375

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 140/336 (41%), Positives = 195/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ DF  M++I++++R  L     I  P + + + S DGT KW ++ 
Sbjct: 29  FRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREIG-----------LQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKETPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYDHTVTVRKTRGDDIDAACGQL 347


>gi|323499824|ref|ZP_08104783.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis
           DSM 21326]
 gi|323315065|gb|EGA68117.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis
           DSM 21326]
          Length = 374

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 140/336 (41%), Positives = 197/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ +F  M++I++++R  L +   I+ P + + + S DGT KW ++ 
Sbjct: 29  FRADQVMKWIYHFGVDNFDNMTNINKKLREKLQRRCEIVAPTVAEAQHSSDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L +  D +G  
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ +E  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSDIMPINDRWDIEDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L ++LK  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIQSSNANRGKVTVEYVLLDHVNDDMDHARELAELLKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347


>gi|262402858|ref|ZP_06079419.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586]
 gi|262351640|gb|EEZ00773.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586]
          Length = 373

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 143/336 (42%), Positives = 195/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G  DF  M++I++++R  L     I  P +   + S DGT KW +R 
Sbjct: 29  FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSAAQHSADGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE+ R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA +++LR+ ++PIN ++ ++  +   R
Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++KG P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMKGTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  IR  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347


>gi|147675306|ref|YP_001216242.1| hypothetical protein VC0395_A0286 [Vibrio cholerae O395]
 gi|262168795|ref|ZP_06036490.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           RC27]
 gi|205829925|sp|A5F3F8|RLMN_VIBC3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146317189|gb|ABQ21728.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227012581|gb|ACP08791.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|262022913|gb|EEY41619.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           RC27]
          Length = 373

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 144/336 (42%), Positives = 194/336 (57%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G  DF  M++I++++R  L     I  P + + + S DGT KW +R 
Sbjct: 29  FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ +E  ++  R
Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L ++LK  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKRTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  IR  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347


>gi|261212143|ref|ZP_05926429.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
 gi|260838751|gb|EEX65402.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
          Length = 373

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 143/336 (42%), Positives = 195/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G  DF  M++I++++R  L     I  P +   + S DGT KW +R 
Sbjct: 29  FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSAAQHSADGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE+ R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA +++LR+ ++PIN ++ ++  +   R
Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++KG P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMKGTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  IR  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347


>gi|86145592|ref|ZP_01063922.1| hypothetical protein MED222_01522 [Vibrio sp. MED222]
 gi|218708638|ref|YP_002416259.1| hypothetical protein VS_0616 [Vibrio splendidus LGP32]
 gi|254807223|sp|B7VJT5|RLMN_VIBSL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|85836563|gb|EAQ54689.1| hypothetical protein MED222_01522 [Vibrio sp. MED222]
 gi|218321657|emb|CAV17609.1| Predicted Fe-S-cluster redox enzyme [Vibrio splendidus LGP32]
          Length = 380

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 140/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ DF+ M++I++++R  L     I+ P + + + S DGT KW +  
Sbjct: 29  FRAEQVMKWIYHFGVDDFEQMNNINKKLREKLLHRCEIVAPIVSEAQHSADGTIKWAMSV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIP+  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ Q+ 
Sbjct: 89  ------GDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  SL +  D +G S
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPSLELMLDDLGFS 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++ + I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHAPNDALRSQIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + +    Y+  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMEYNYTVTVRKTRGDDIDAACGQL 347


>gi|260771398|ref|ZP_05880323.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii
           CIP 102972]
 gi|260613524|gb|EEX38718.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii
           CIP 102972]
 gi|315180979|gb|ADT87893.1| predicted Fe-S-cluster redox enzyme [Vibrio furnissii NCTC 11218]
          Length = 373

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 145/352 (41%), Positives = 202/352 (57%), Gaps = 22/352 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI KWIY  G  DF  M++I++++R  L +   I  P + + + S DGT KW +R 
Sbjct: 29  FRADQIMKWIYHFGCDDFDKMTNINKKLREQLKERCEIRAPYVSEAQHSSDGTIKWAMRV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGQIDVALAISLHAPNDTLRSEIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
               I  F + + +  ++  +R  RG DI AACGQL  +   I +  R +M+
Sbjct: 312 SNSRIDRFQKTLMQYDHTVTVRKTRGDDIDAACGQL--VGDVIDRTKRTKMK 361


>gi|295698544|ref|YP_003603199.1| radical SAM enzyme, Cfr family [Candidatus Riesia pediculicola
           USDA]
 gi|291157215|gb|ADD79660.1| radical SAM enzyme, Cfr family [Candidatus Riesia pediculicola
           USDA]
          Length = 356

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 143/341 (41%), Positives = 201/341 (58%), Gaps = 23/341 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+  WIY     +FQ M++ S+++R  +   F I+ P I ++KIS DGT KW +R 
Sbjct: 27  FRADQLTDWIYRHYCDNFQSMTNFSRDLRKKMESFFQILPPRIQEKKISLDGTIKWRMR- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                     IETV+IPE  R TLC+SSQ+GC L C FC+   +K  RNL   EI+ QV 
Sbjct: 86  ----TDSEETIETVFIPEGRRKTLCISSQIGCPLKCRFCFVSKKKFRRNLKISEIVGQVW 141

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-------ISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           +A  +L             I SV  K        +NIV+MG GEPL NF N+  S+ I +
Sbjct: 142 IAGKILRK----------EISSVFSKKRNHLLPFTNIVIMGTGEPLLNFRNILSSIRIIT 191

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
            S G +F +++I LST+G  P I ++ E   + LAISLHA +N +R+ ++PIN+KY ++ 
Sbjct: 192 SSHGFNFPEKKIVLSTAGVSPAIEKLLENTQIKLAISLHAPNNKIRDRIMPINKKYDIQS 251

Query: 266 LIDACRHYPGLSNA-RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
           ++D+ + +   SN  +RIT EY+ML+GIND  +DA  L  ILK IP KINLIPFN   G 
Sbjct: 252 ILDSIQKFQNHSNIFQRITIEYIMLRGINDEVQDAYQLADILKNIPVKINLIPFNSTAGI 311

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            Y  S+   I  FSE +K+  + + +R  +G DI A+CGQL
Sbjct: 312 PYKRSNLLHIQQFSEILKKFRFVTTVRKTKGGDIQASCGQL 352


>gi|197118042|ref|YP_002138469.1| ribosomal RNA large subunit methyltransferase N [Geobacter
           bemidjiensis Bem]
 gi|197087402|gb|ACH38673.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 351

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 140/337 (41%), Positives = 205/337 (60%), Gaps = 29/337 (8%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ--HFSIIYPEIVDEKISCDGTRKWL 89
           R R  QI+KW+Y      F+ M+++S+E R +L +    S + PE+V+   S DGTRK+L
Sbjct: 25  RFRAKQIFKWLYQMDAGSFEEMTNVSKEFRVMLGEIAQISNLTPEVVE--ASEDGTRKYL 82

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
            R     +     +E+V IP++ R TLC+SSQVGC++ C+FC TG+  L RNLT  EI+ 
Sbjct: 83  FR-----LSDGSAVESVLIPDEGRNTLCISSQVGCAMGCAFCLTGSFGLSRNLTTAEIVN 137

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           QV   +    D P                ++NIV MGMGEPL N   V  ++ I +D  G
Sbjct: 138 QVCAVKR---DQP----------------VNNIVFMGMGEPLANLKGVIPAVQILTDPDG 178

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             FS R++T+STSG VP +A +G    V LA+SL+A ++++R+ ++P+NR YPL  L+ A
Sbjct: 179 FQFSTRKVTVSTSGLVPEMAELGRGCTVNLAVSLNATTDEVRSRIMPVNRTYPLAQLLAA 238

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           C+ +P L + R IT EYVM++ +NDS  DA  L++++  IP+K+NLIPFN   GC++ C 
Sbjct: 239 CKAFP-LPSRRWITMEYVMIRDLNDSLEDAKRLVRLISNIPSKVNLIPFNEHEGCDFKCP 297

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            Q+ I  F + +     +   R+ RG DI AACGQLK
Sbjct: 298 TQESIDRFHKYLLDKNVTVITRSSRGSDISAACGQLK 334


>gi|124515329|gb|EAY56839.1| putative radical SAM family protein [Leptospirillum rubarum]
          Length = 379

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 142/334 (42%), Positives = 201/334 (60%), Gaps = 9/334 (2%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+ +WI+ + + +++ M ++  + R   +  + +  P + DEK S DGTRK LL   
Sbjct: 29  RARQVAQWIFRQNVSEWERMKNLPGDDRRRWSDRWDLSLPIVRDEKRSRDGTRKLLLE-- 86

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              + G   IE+V IP   R TLCVSSQVGC + C FC T    LVRNL+  EIL QV +
Sbjct: 87  ---LSGGALIESVLIPRDDRATLCVSSQVGCGIGCRFCRTAEMGLVRNLSVSEILGQVRV 143

Query: 154 ARSLLGDFPGCEDIEGMVIPS-VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           A  LL + P   D+     P+    +++++V MGMGEPL NFD++ +SL++ +   G   
Sbjct: 144 ANRLLAEAP-VRDMSKETDPTPFLSRVNHLVFMGMGEPLANFDHLVRSLAVLTSPEGFGL 202

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S RRIT+STSG    I  +G   I V LA+SL A + +LR  L+PI+R +P+  ++ ACR
Sbjct: 203 SSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEELRENLMPISRHHPIRSILSACR 262

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            YP L N +RITFEYV+L G+ND    A  L ++L    +K+NLIPFNP+PG  Y   D+
Sbjct: 263 AYP-LRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRSKVNLIPFNPYPGSPYHRPDK 321

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             +  F E +   G ++ +RT RG DIL ACGQL
Sbjct: 322 DRVRRFQEILLAKGVTATLRTTRGEDILGACGQL 355


>gi|84387623|ref|ZP_00990640.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01]
 gi|84377468|gb|EAP94334.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01]
          Length = 380

 Score =  259 bits (661), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 140/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ DF+ M++I++++R  L     I+ P + + + S DGT KW +  
Sbjct: 29  FRAEQVMKWIYHFGVDDFEQMNNINKKLREKLLHRCEIVAPIVSEAQHSADGTIKWAMSV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIP+  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ Q+ 
Sbjct: 89  ------GDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  SL +  D +G S
Sbjct: 143 RAAREIG-----------LEKDTGRRPITNVVMMGMGEPLLNMKNLIPSLELMLDDLGFS 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++ + I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHAPNDALRSQIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKETPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + +    Y+  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMEYNYTVTVRKTRGDDIDAACGQL 347


>gi|59711233|ref|YP_204009.1| hypothetical protein VF_0626 [Vibrio fischeri ES114]
 gi|75354452|sp|Q5E775|RLMN_VIBF1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|59479334|gb|AAW85121.1| predicted enzyme [Vibrio fischeri ES114]
          Length = 372

 Score =  259 bits (661), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 141/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KW+Y  G  DF  M++I++++R  L     I  P + + + S DGT KW ++ 
Sbjct: 29  FRADQVMKWMYHFGCDDFDQMNNINKKLREKLKHKCEIRAPYVSEAQHSSDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIP+  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ Q+ 
Sbjct: 89  ------GDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G +
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFA 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA +++LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPTDELRSQIMPINDRWDIDAFLASVR 251

Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA   R+T EYV+L  +ND    A  L ++LK  PAKINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGRVTVEYVLLDHVNDDMDHARQLAELLKDTPAKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + +    Y+  IR  RG DI AACGQL
Sbjct: 312 SNSRIDRFMKTLMEYDYTVTIRKTRGDDIDAACGQL 347


>gi|116787825|gb|ABK24655.1| unknown [Picea sitchensis]
          Length = 464

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 152/358 (42%), Positives = 207/358 (57%), Gaps = 26/358 (7%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHLLNQHF 68
           GM   ELE  +  +        M    +WK +Y  G+  +    M  +S++ R  L +  
Sbjct: 107 GMTYHELEAWVQSLSYRAGQAMM----LWKCLYGNGMWAQHVDEMQALSKQFRATLEKTA 162

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLT 127
                 + D   + DGTRK L       +G  + IETV IP E+ R TLCVSSQVGC++ 
Sbjct: 163 EFSVFSLKDVYSASDGTRKILFS-----LGDGLIIETVLIPCERGRTTLCVSSQVGCAMN 217

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FCYTG   L RNLTA EI+ QV+ AR    +  G               I+N+V MGM
Sbjct: 218 CQFCYTGRMGLKRNLTAAEIVEQVVYARRHFTNEVG--------------PITNVVFMGM 263

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NFDNV K+  I  D  GL FS R++T+STSG VP I R   E   +LA+SL+A +
Sbjct: 264 GEPLHNFDNVLKAAEIMVDCHGLHFSPRKVTVSTSGLVPQIRRFIRESPCVLAVSLNATT 323

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++RN ++PINRKY L+ML+   R   G  +  ++ FEYVML GINDS  DA  L+ +++
Sbjct: 324 DEVRNWIMPINRKYNLDMLLTMLREEIGQRHKFKVLFEYVMLLGINDSLDDARRLVNLVE 383

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           GIP KINLI FNP  G  ++ S Q+ ++ F + +  +GY++ IR  RG D +AACGQL
Sbjct: 384 GIPCKINLISFNPHEGSSFIPSTQEQMLAFHKIVADAGYATFIRHSRGNDQMAACGQL 441


>gi|323491629|ref|ZP_08096808.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           brasiliensis LMG 20546]
 gi|323314205|gb|EGA67290.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           brasiliensis LMG 20546]
          Length = 375

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 140/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ +F  M++I++++R  L     I  P + + + S DGT KW ++ 
Sbjct: 29  FRADQVMKWIYHFGVDNFDDMTNINKKLREKLQHRCEIKAPTVAEAQHSSDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE+ R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+NIVMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREIG-----------LQKETGRRPITNIVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347


>gi|209694315|ref|YP_002262243.1| hypothetical protein VSAL_I0726 [Aliivibrio salmonicida LFI1238]
 gi|254807148|sp|B6EGY4|RLMN_ALISL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|208008266|emb|CAQ78411.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 383

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 143/336 (42%), Positives = 195/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI KW+Y  G  DF  M++I++++R  L Q   I  P + + + S DGT KW ++ 
Sbjct: 29  FRADQIMKWMYHFGCDDFDQMNNINKKLREKLKQKCEIRAPYVSEAQHSVDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIP+  R TLCVSSQVGC+L C+FC T  Q   RNL   EI+ Q+ 
Sbjct: 89  ------GDQDVETVYIPDGDRATLCVSSQVGCALACTFCSTAQQGFNRNLKVSEIVGQIW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  SL I  D +G  
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLMPSLDIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  ++ V LAISLHA ++ LR+ ++PIN ++ +E  +   R
Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGKVDVALAISLHAPTDKLRSEIMPINDRWNIEAFLACVR 251

Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA   R+T EYV+L  IND    A  L ++LK  PAKINLIPFNP+PG  Y   
Sbjct: 252 EYIASSNANRGRVTVEYVLLDHINDDMDHARQLAELLKDTPAKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + +    ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFMKTLMEYDFTVTVRRTRGDDIDAACGQL 347


>gi|197336065|ref|YP_002155383.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11]
 gi|254807222|sp|B5FAW9|RLMN_VIBFM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|197317555|gb|ACH67002.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11]
          Length = 372

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 141/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KW+Y  G  DF  M++I++++R  L     I  P + + + S DGT KW ++ 
Sbjct: 29  FRADQVMKWMYHFGCDDFDQMNNINKKLREKLKNKCEIRAPYVSEAQHSSDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIP+  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ Q+ 
Sbjct: 89  ------GDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G +
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFA 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA +++LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPTDELRSQIMPINDRWDIDAFLASVR 251

Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA   R+T EYV+L  +ND    A  L ++LK  PAKINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGRVTVEYVLLDHVNDDMDHARQLAELLKDTPAKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + +    Y+  IR  RG DI AACGQL
Sbjct: 312 SNSRIDRFMKTLMEYDYTVTIRKTRGDDIDAACGQL 347


>gi|206601630|gb|EDZ38113.1| Putative radical SAM family protein [Leptospirillum sp. Group II
           '5-way CG']
          Length = 379

 Score =  258 bits (660), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 142/334 (42%), Positives = 203/334 (60%), Gaps = 9/334 (2%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  QI +WI+ +   +++ M+++  E R   ++ + +  P + DEK S DGTRK+LL   
Sbjct: 29  RARQIAQWIFRQNASEWERMNNLPGEDRRRWSEIWDLSLPIVRDEKRSRDGTRKFLLELS 88

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              +     IE+V IP   R TLCVSSQVGC + C FC T    L+RNL+  EIL QV +
Sbjct: 89  DGAL-----IESVLIPRDDRATLCVSSQVGCGIGCRFCRTAEMGLIRNLSVSEILGQVRV 143

Query: 154 ARSLLGDFPGCEDIEGMVIPS-VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           A  LL + P   D+     P+ +  +++++V MGMGEPL NFD++ +SL++ +   G   
Sbjct: 144 ANRLLAESP-VRDMSKETEPAPLLSRVNHLVFMGMGEPLANFDHLVRSLAVLTSPEGFGL 202

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S RRIT+STSG    I  +G   I V LA+SL A + +LR  L+PI+R +P+  ++ ACR
Sbjct: 203 SSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEELRENLMPISRHHPIRSILSACR 262

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            YP L N +RITFEYV+L G+ND    A  L ++L    +K+NLIPFNP+PG  Y   D+
Sbjct: 263 AYP-LRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRSKVNLIPFNPYPGSPYHRPDK 321

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             +  F E +   G ++ +RT RG DIL ACGQL
Sbjct: 322 DRVRRFQEILLAKGVTATLRTTRGEDILGACGQL 355


>gi|254506728|ref|ZP_05118868.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16]
 gi|219550309|gb|EED27294.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16]
          Length = 374

 Score =  258 bits (660), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 140/336 (41%), Positives = 195/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ +F  M++I++++R  L     I  P + + + S DGT KW ++ 
Sbjct: 29  FRADQVMKWIYHFGVDNFDNMTNINKKLREKLQHRCEIKAPTVAEAQHSSDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  IR  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347


>gi|91225141|ref|ZP_01260363.1| hypothetical protein V12G01_12975 [Vibrio alginolyticus 12G01]
 gi|91190084|gb|EAS76355.1| hypothetical protein V12G01_12975 [Vibrio alginolyticus 12G01]
          Length = 375

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 139/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ DF+ M++I++++R  L     I  P + + + S DGT KW ++ 
Sbjct: 29  FRADQVMKWIYHFGVDDFEKMTNINKKLREKLLHKCEIKAPTVAEAQHSSDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L +  D +G  
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDEMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347


>gi|71900902|ref|ZP_00683017.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1]
 gi|71729314|gb|EAO31430.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1]
          Length = 309

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 138/295 (46%), Positives = 182/295 (61%), Gaps = 23/295 (7%)

Query: 81  SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140
           S DGT KWLL   A        IETVYIP+K RGTLCVSSQ+GC L C+FC T TQ   R
Sbjct: 2   SADGTHKWLL---AMGTDRKNAIETVYIPDKGRGTLCVSSQIGCGLNCTFCSTATQGFNR 58

Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
           NLT  EI+ QV +A   LG+           +P   R+++N+VMMGMGEPL NFDNV ++
Sbjct: 59  NLTTAEIIGQVWVAARHLGN-----------VPHQRRRLTNVVMMGMGEPLMNFDNVVRA 107

Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
           +S+  D +G   S +R+TLSTSG VP I R+  E  V LA+SLHA ++ LR  LVP+N+K
Sbjct: 108 MSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAPNDKLREQLVPLNKK 167

Query: 261 YPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIKILKGI--------PA 311
           YP+  L+ +C  Y  ++  R  +TFEY ++KG+ND    A  L K+++           A
Sbjct: 168 YPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELAKLMRQFDCAMQVKGAA 227

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           K+NLIPFNP+PG  Y  S + DI  F + +  +   + +R  RG DI AACGQLK
Sbjct: 228 KVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRGDDIDAACGQLK 282


>gi|332530539|ref|ZP_08406478.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
           19624]
 gi|332040014|gb|EGI76401.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
           19624]
          Length = 404

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 147/353 (41%), Positives = 204/353 (57%), Gaps = 36/353 (10%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R +Q+++WI+ RG  DF  MSD+++ +R  L     I    ++ ++ S DGT KWL  
Sbjct: 25  RFRATQLFRWIHQRGASDFDQMSDLAKSLRAKLKTAAHIQGLPVITQQESADGTIKWLFD 84

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    +E VYIPE  RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+
Sbjct: 85  -----VGDGNAVEAVYIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEIVAQL 139

Query: 152 LLARSLLGDF------PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
             A   L         PG ED          R I+N+VMMGMGEPL N+  +  +L +  
Sbjct: 140 WHAEHFLRARRQHPLQPG-ED---------HRVITNVVMMGMGEPLQNYAALVPALRVML 189

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
           D  G   S+RR+T+STSG VP + R+ E+  V LA+SLHA ++ LR+ LVP+NRKYP+  
Sbjct: 190 DDHGYGLSRRRLTVSTSGVVPMMERLSEDCPVALAVSLHAPNDGLRDGLVPLNRKYPIHE 249

Query: 266 LIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILK-----------GIPAK 312
           L+D C  Y  L++A R  ITFEY ML G+ND P  A  L+ +++           G+  K
Sbjct: 250 LLDTCLSY--LAHAPRDFITFEYCMLDGVNDQPEHARELLALMQVFRQRAADLGHGVGCK 307

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +NLIPFNP+P      S  + +  F++ +  +G  + +R  RG DI AACGQL
Sbjct: 308 LNLIPFNPFPESGLKRSPGERVQAFAKILLEAGIVTTVRKTRGDDIDAACGQL 360


>gi|260776635|ref|ZP_05885530.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607858|gb|EEX34123.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 374

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 139/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ DF+ M++I++++R  L     I  P + + + S DGT KW ++ 
Sbjct: 29  FRAEQVMKWIYHFGVDDFEKMTNINKKLREKLIHRCEIKAPVVAEAQHSSDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L +  D +G  
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGQIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347


>gi|254228668|ref|ZP_04922092.1| radical SAM enzyme, Cfr family [Vibrio sp. Ex25]
 gi|262395120|ref|YP_003286974.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. Ex25]
 gi|151938847|gb|EDN57681.1| radical SAM enzyme, Cfr family [Vibrio sp. Ex25]
 gi|262338714|gb|ACY52509.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. Ex25]
          Length = 375

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 139/336 (41%), Positives = 195/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ DF+ M++I++++R  L     I  P + + + S DGT KW +  
Sbjct: 29  FRADQVMKWIYHFGVDDFEKMTNINKKLREKLLHKCEIKAPTVAEAQHSSDGTIKWAMNV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L +  D +G  
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347


>gi|269965168|ref|ZP_06179302.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269830154|gb|EEZ84381.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 375

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 139/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ DF+ M++I++++R  L     I  P + + + S DGT KW ++ 
Sbjct: 29  FRADQVMKWIYHFGVDDFEKMTNINKKLREKLLYKCEIKAPTVAEAQHSSDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L +  D +G  
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L +++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347


>gi|268678701|ref|YP_003303132.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616732|gb|ACZ11097.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM
           6946]
          Length = 358

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 146/382 (38%), Positives = 221/382 (57%), Gaps = 42/382 (10%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KE++  + +EEL E +            R  QI++W+Y + +  F  M ++ +E++  
Sbjct: 1   MEKENIFDLSKEELSEVI--------KPAFRAKQIYQWLYQKYVTSFDEMKNLPKELKEQ 52

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK------------ 111
           LN+ + +    IV  + SCDG++K+L       +     +E V +P K            
Sbjct: 53  LNETYYLDPLRIVTIEESCDGSKKYLF-----ALKDNQTVEAVLLPMKQEQVDEEGKLVH 107

Query: 112 -SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
            +R T+C+SSQVGC + C+FC TG     RNLTA EI  QVL+ +    D    E+    
Sbjct: 108 HARYTICISSQVGCKIGCAFCLTGKSGFKRNLTAGEITTQVLMIKR---DNAIAEN---- 160

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                 R++ NIV MGMGEPL N  NV K++ I SD  GLS S RR T+STSG    I +
Sbjct: 161 ------RRV-NIVYMGMGEPLDNLTNVSKAVRIFSDLDGLSISPRRQTISTSGLSSQIEK 213

Query: 231 VGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +G+ ++G++LAISLHAV +DLR  L+PIN+ Y +E +++A R +P +   +R+ FEY+++
Sbjct: 214 LGKMDLGILLAISLHAVDDDLRQKLMPINKAYNIESIMNAVRGFP-IDARKRVMFEYLVM 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           KG+ND  + A  L+K+L GI AK+NLI FNP  G ++     KD++ F + +   G    
Sbjct: 273 KGVNDDQKSAKKLVKLLHGIKAKVNLIYFNPHAGSDFDRPSTKDMIAFQQYLVDHGVLCT 332

Query: 350 IRTPRGLDILAACGQLKSLSKR 371
           IR  +GLDI AACGQLK   ++
Sbjct: 333 IRQSKGLDISAACGQLKDKEQK 354


>gi|301057688|ref|ZP_07198761.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
 gi|300448149|gb|EFK11841.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
          Length = 346

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 148/362 (40%), Positives = 208/362 (57%), Gaps = 25/362 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L G+   E+E+  +  G+       R  QI  WI  R  + F  M ++ +++R LL + 
Sbjct: 5   DLKGLSAAEMEKWAVDNGMEA----YRGRQIRHWILTRFAKSFDEMDNLPKKLRSLLKEK 60

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             +     +    S DGTRK+L +     +     IETV IPE+   TLCVSSQVGC++ 
Sbjct: 61  AHLSSLRELKAIQSEDGTRKYLYQ-----LQDGHSIETVLIPERDHLTLCVSSQVGCAMG 115

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG Q  +RNL   EI+ QV+  +  L  FP               ++ NIV+MGM
Sbjct: 116 CVFCATGKQGFIRNLKPGEIIEQVIRTKQSLA-FPD--------------RLRNIVLMGM 160

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N+D V K+L    D  G++FS R++TLST G VP I ++ ++I + LA+SL+   
Sbjct: 161 GEPLANYDAVIKALRNIIDPDGMNFSHRKVTLSTCGLVPEIKKLAKDITINLAVSLNGAD 220

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           N+ R+ L+PINRKYPLE LI+AC  +P L N R ITFEY+++K  ND  RDA NL ++L 
Sbjct: 221 NETRSRLMPINRKYPLEALIEACSSFP-LPNRRMITFEYILIKDENDRDRDAHNLCRLLS 279

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G+ AKINLI  N  P   +     + ++ F E +    +++ IR  +G DILAACGQLK 
Sbjct: 280 GLRAKINLIQLNAAPDSPFSIPSLEKVLHFQEILTDRHFTAIIRKSKGRDILAACGQLKG 339

Query: 368 LS 369
            S
Sbjct: 340 TS 341


>gi|54307955|ref|YP_128975.1| hypothetical protein PBPRA0760 [Photobacterium profundum SS9]
 gi|81615490|sp|Q6LU52|RLMN_PHOPR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|46912381|emb|CAG19173.1| Conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 373

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 147/365 (40%), Positives = 201/365 (55%), Gaps = 31/365 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L ++ L     EEL E              R  QI KWIY  G  DF  M++I++++R  
Sbjct: 11  LDRKGLRTYFAEELNEKAF-----------RADQIMKWIYQFGCDDFDQMTNINKKLREK 59

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +   I  P +   + S DGT KW +R       G  ++ETVYIP+  R TLCVSSQVG
Sbjct: 60  LKRVAEIRAPYVSQAQHSVDGTIKWAMRV------GDQDVETVYIPDGDRATLCVSSQVG 113

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNI 182
           C+L C+FC T  Q   RNL   EI+ QV  A   +G           +    GR+ I+N+
Sbjct: 114 CALACTFCSTAQQGFNRNLRVSEIIGQVWRAAKEIG-----------IEKDTGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++   I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDIGFGLSKRRVTVSTSGVVSGLDQMTGNIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDAL 300
           LHA +++LR+ ++PIN ++ +   +++   Y   SNA   R+T EY++L  +ND    A 
Sbjct: 223 LHAPTDELRSQIMPINDRFNIATFLESVSRYIEQSNANRGRVTVEYILLDHVNDDMEHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L  +LK  PAKINLIPFNP+PG  Y       I  F + +    ++  +R  RG DI A
Sbjct: 283 QLAVLLKDTPAKINLIPFNPYPGSPYRKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDIDA 342

Query: 361 ACGQL 365
           ACGQL
Sbjct: 343 ACGQL 347


>gi|312884301|ref|ZP_07744010.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309368074|gb|EFP95617.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 375

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 137/336 (40%), Positives = 195/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ +F  M++I++++R  L Q  ++  P + + + S DGT KW ++ 
Sbjct: 29  FRADQVMKWIYHFGVDNFDNMTNINKKLREKLQQRCTVTAPTVAEAQHSSDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLC+SSQVGC+L C FC T  Q   RNL   EI+ Q+ 
Sbjct: 89  ------GDQDVETVYIPEDDRATLCISSQVGCALECKFCSTAQQGFNRNLKVSEIIGQLW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L +  D +   
Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLAFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA ++ LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDALRSEIMPINDRWNIDDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L   LK  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIQSSNANRGKVTIEYVLLDHVNDDMDHARELSHTLKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + + G++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQLGHTVTVRKTRGDDIDAACGQL 347


>gi|224370186|ref|YP_002604350.1| putative SAM-dependent methyltransferase [Desulfobacterium
           autotrophicum HRM2]
 gi|223692903|gb|ACN16186.1| putative SAM-dependent methyltransferase [Desulfobacterium
           autotrophicum HRM2]
          Length = 345

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 136/336 (40%), Positives = 201/336 (59%), Gaps = 19/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q++KW+Y+R  + F  M+DI +++R  L ++F++        +IS DGT K L R 
Sbjct: 24  FRGGQVFKWLYLRQAQTFDEMTDIGKDLRQRLKENFTLSAMVFDRSEISRDGTEKLLFR- 82

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IE V IPEK   TLC+SSQ GC+  C FC T      RNLT  EI+ Q+ 
Sbjct: 83  ----LHDNAYIEAVLIPEKDHFTLCISSQAGCAQGCKFCLTAKGGFTRNLTTGEIIGQIR 138

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS-MGLS 211
            A+++L                  R +SNIV MGMGEPL N+D V ++LSI +DS  GL 
Sbjct: 139 TAKTVLAK------------RKAQRPLSNIVFMGMGEPLANYDTVVRALSIMTDSDYGLK 186

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S RRITLST G VP I R+G +  V LA+SL+A +++ R++L+PINR+YP+  L+ AC 
Sbjct: 187 LSSRRITLSTCGLVPEILRLGNDTEVNLAVSLNATTDETRSMLMPINRRYPMHELLKACT 246

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           ++  +   ++ITFEY+++K +ND+  DA  LI +L  I AK+NLIPFN     ++    +
Sbjct: 247 NFQ-MKPRKKITFEYILIKNVNDTMDDAKRLITLLLPIRAKVNLIPFNEHDQSDFKRPSK 305

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           + I+ F + +     ++ +R  +G DI AACGQL++
Sbjct: 306 ESILAFLQMLLDHNLTAMVRKSKGDDISAACGQLRA 341


>gi|261252176|ref|ZP_05944749.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis
           CIP 102891]
 gi|260935567|gb|EEX91556.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis
           CIP 102891]
          Length = 374

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 139/336 (41%), Positives = 195/336 (58%), Gaps = 20/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KWIY  G+ +F  M++I++++R  L     I  P + + + S DGT KW ++ 
Sbjct: 29  FRADQVMKWIYHFGVDNFDNMTNINKKLREKLLHRCEIKAPVVAEAQHSSDGTIKWAMKV 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV 
Sbjct: 89  ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            A   +G           +    GR+ I+N+VMMGMGEPL N  N+  +L I  D +G  
Sbjct: 143 RAAREIG-----------LQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            SKRR+T+STSG V  + ++  +I V LAISLHA +++LR+ ++PIN ++ ++  + + R
Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDELRSQIMPINDRWDIQDFLASVR 251

Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            Y   SNA R  +T EYV+L  +ND    A  L  ++K  P KINLIPFNP+PG  Y   
Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAVLMKDTPCKINLIPFNPYPGSPYKKP 311

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               I  F + + +  ++  +R  RG DI AACGQL
Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347


>gi|114566753|ref|YP_753907.1| hypothetical protein Swol_1227 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318220|sp|Q0AXL8|RLMN_SYNWW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|114337688|gb|ABI68536.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 357

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 147/376 (39%), Positives = 222/376 (59%), Gaps = 24/376 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN ++K+ L+G+   ++EE LL +  P    R R  Q++KWIY +    F  MSD+ + +
Sbjct: 1   MNSIEKKQLLGLDLNQMEEFLLGLEEP----RFRGRQVYKWIYQKECSSFYEMSDLPRSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTL 116
           R  L++   +  P ++ +++  DG+RK+L+    +      +IE V +P+    KS  TL
Sbjct: 57  RKKLDEKARVSIPRVLKQRVGKDGSRKFLMELDDK-----KKIECVLLPQSRDKKSSYTL 111

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           C+S+QVGC + CSFC TG     RNL A EI+ Q L ++         +++   +     
Sbjct: 112 CLSTQVGCPIACSFCATGQSGFQRNLKAFEIIGQYLGSK---------KELSKRLKSPRA 162

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235
             ISN+V MGMGEPL N+D V KS+ + +D  G++  +RRIT+STSG V  I ++ +E I
Sbjct: 163 ELISNVVYMGMGEPLLNYDEVIKSVHMLNDPRGINLGQRRITISTSGEVAGIKKLAQENI 222

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
            + LAISLHA  N LR+ L+P+NRKYPLE+L  A   Y   +  RR+TFEY++L  +N S
Sbjct: 223 QLTLAISLHACDNSLRDQLIPLNRKYPLEVLFPAIEDYIAFT-GRRVTFEYLLLDEVNMS 281

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
             DA  ++K+LK + A +NLIP+N   G  +   +   I  F + ++  G +  IR  RG
Sbjct: 282 RNDANKMVKLLKPLLANLNLIPYNEIEGLPFKKPETAKIWQFYQWLQDGGLNVSIREERG 341

Query: 356 LDILAACGQLKSLSKR 371
            DI AACGQL+S  +R
Sbjct: 342 SDINAACGQLRSDYRR 357


>gi|297519092|ref|ZP_06937478.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           OP50]
          Length = 330

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/334 (43%), Positives = 194/334 (58%), Gaps = 22/334 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
           ++LK  P KINLIP+NP+PG  Y  S    I  F
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRF 330


>gi|118444223|ref|YP_878314.1| ribosomal RNA large subunit methyltransferase N [Clostridium novyi
           NT]
 gi|205829738|sp|A0Q112|RLMN_CLONN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118134679|gb|ABK61723.1| radical SAM enzyme, Cfr family [Clostridium novyi NT]
          Length = 343

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 141/337 (41%), Positives = 200/337 (59%), Gaps = 25/337 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLL 90
           + R  QI++WIY + + +F  MS+IS+  +  L ++F I  P +V + +S  DGT K+L 
Sbjct: 23  KFRAKQIFQWIYKKAVFNFDDMSNISKSTKEKLKENFYIQIPNVVKKYVSNIDGTEKFLF 82

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
            +    I     IE+V +  K   ++CVS+Q+GC + C FC +    +VRNLT+ EI+ Q
Sbjct: 83  EYEDGNI-----IESVVMKYKHGNSICVSTQIGCRMGCKFCASTVDGVVRNLTSGEIIAQ 137

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           VL A+  + D                 +ISN+V+MG GEPL N+DNV K L + +D   L
Sbjct: 138 VLKAQKEICD-----------------RISNVVLMGSGEPLDNYDNVIKFLKLINDEDAL 180

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           +  +R ITLST G VP I  + ++ + + LAISLHA +N++R  ++PI  KY LE L+DA
Sbjct: 181 NIGQRHITLSTCGIVPKIKELADQKMQITLAISLHAPNNEIRKSMMPIANKYTLEELLDA 240

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           CR+Y   +N RRITFEY ++KG+NDS  +A  LIKI KG+   INLIP N      Y  S
Sbjct: 241 CRYYYRTTN-RRITFEYALVKGVNDSRENAEELIKISKGMLCHINLIPVNEIKENNYERS 299

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             KDI  F E + + G  + IR   G DI  ACGQL+
Sbjct: 300 KSKDIEEFKETLIKHGIETTIRREMGSDINGACGQLR 336


>gi|297621155|ref|YP_003709292.1| Radical SAM superfamily protein [Waddlia chondrophila WSU 86-1044]
 gi|297376456|gb|ADI38286.1| Radical SAM superfamily protein [Waddlia chondrophila WSU 86-1044]
          Length = 362

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 143/363 (39%), Positives = 202/363 (55%), Gaps = 26/363 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S   + REE ++     G+P    R  +SQI +WIY +G+ D    S++S + R  L   
Sbjct: 3   SAFDLSREEWQKWAETNGLP----RFVSSQILQWIYEKGVVDPAQFSNLSLKARKFLASQ 58

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F    P I    +S D + K+LLR     +      E V +P +SR TLC+SSQVGC + 
Sbjct: 59  FKWELPAIHSHLVSVDQSEKFLLRTSDHQL-----FEMVLMPYESRITLCISSQVGCRIG 113

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC TG   L RNLT+ EIL Q+LLA   +                 G+KI+NIV MGM
Sbjct: 114 CTFCQTGKLGLQRNLTSGEILSQILLANQSMN----------------GKKITNIVFMGM 157

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N+D V K+  +  D   +  S  R+T+STSG VP I ++G+++ V LAISLH   
Sbjct: 158 GEPLDNYDEVLKACRLMVDPKAIGLSMHRVTVSTSGLVPYIEKLGQDLPVRLAISLHQAD 217

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           ++ R+ ++P+NR+YPL  L  A + YP       ITFEYVM++G ND   DA  L+K + 
Sbjct: 218 DEKRSRMMPVNRRYPLSELKKALQQYPA-PKRYGITFEYVMIEGENDRIEDAKKLVKFVS 276

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G+ AK+NLIP N +PG E   S    + +F   +      +P+R  RG DI   CGQL +
Sbjct: 277 GLKAKVNLIPINHFPGLEMKASAADRLKSFQSYLAERSIPAPVRYSRGQDISGGCGQLAA 336

Query: 368 LSK 370
            ++
Sbjct: 337 KTQ 339


>gi|290980807|ref|XP_002673123.1| predicted protein [Naegleria gruberi]
 gi|284086704|gb|EFC40379.1| predicted protein [Naegleria gruberi]
          Length = 482

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 160/421 (38%), Positives = 229/421 (54%), Gaps = 62/421 (14%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           ++SL+G+ + E++E L K   P      R ++I+K+IY  G R F  ++ +++  R  L+
Sbjct: 31  RKSLMGLNKTEMKEILEKTH-PHVASSFRLNEIYKFIYKFGARKFDDITVLTKSDRQSLS 89

Query: 66  QHFSIIYPEIVDEKISCD---GTRKWLLRFPARCIGGPV--------------------- 101
           + +SI     ++E+I       TRK+L  F       PV                     
Sbjct: 90  ELYSIDILGNIEEEIKSKKDKHTRKFLFAFQNPKYVPPVADNSVDSTIVSTTSSASSSCG 149

Query: 102 ---------------------------EIETVYI---PEKS----RGTLCVSSQVGCSLT 127
                                      ++E VYI   P+ S    RGT+C+SSQVGCSL 
Sbjct: 150 NQQNISDADVAISPMKKPTLKEQKQFNKVEAVYIYHPPKASDSFGRGTVCLSSQVGCSLN 209

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMG 186
           C FC TGT  + RNL A EI+ Q++  +  L DFP     E     S+ +  ++NIV MG
Sbjct: 210 CKFCRTGTAPIERNLLASEIVSQLVSVKHRLMDFPIYMTEEERKRASIEKSFVNNIVFMG 269

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
            GEPL N+ NVKK++ I SD  G+S  KR+I +STSG    I  V  ++GV LAISLHA 
Sbjct: 270 EGEPLYNYKNVKKAIEILSDGCGIS--KRKIIVSTSGVCNLIPDVVNDLGVNLAISLHAT 327

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N+LR+ +VPIN+ +PLE+L +  R     +N R ITFEYVML  +ND   DA  L+K++
Sbjct: 328 TNELRDNIVPINKIFPLEVLFETLREQCFKNNNRHITFEYVMLNHVNDFIDDAKRLVKLV 387

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           K IP  +NLI FN W G  + CS  + I  FS+ + ++G S+P+R  +G DIL ACGQLK
Sbjct: 388 KDIPCSVNLIAFNEWEGSGFECSSDERIEEFSKYLYKNGISAPVRHSKGQDILGACGQLK 447

Query: 367 S 367
           +
Sbjct: 448 N 448


>gi|322419007|ref|YP_004198230.1| radical SAM enzyme, Cfr family [Geobacter sp. M18]
 gi|320125394|gb|ADW12954.1| radical SAM enzyme, Cfr family [Geobacter sp. M18]
          Length = 344

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 139/343 (40%), Positives = 205/343 (59%), Gaps = 29/343 (8%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89
           R R  QI+KW+Y     DF  M+++S+E R +L +   I  + PE V+   S DGTRK+L
Sbjct: 25  RFRAKQIFKWLYQMDATDFDEMTNVSKEFRAVLKERAEIGDLSPEAVE--ASEDGTRKYL 82

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
            R     +     +E+V IP++ R TLC+SSQVGC++ C+FC TG+  L RNLT  EI+ 
Sbjct: 83  FR-----LKDGAAVESVLIPDEGRNTLCISSQVGCAMKCAFCLTGSFGLSRNLTTAEIVN 137

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           QV   +    + P                ++NIV MGMGEPL N   V  ++ I +D  G
Sbjct: 138 QVCAVKR---EHP----------------VNNIVFMGMGEPLHNLAAVIPAVQILTDPDG 178

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
              S R++T+STSG VP +A +G    V LA+SL+A ++++R+ ++PINR+YPL+ L+ A
Sbjct: 179 FQLSTRKVTVSTSGLVPEMAELGRGCTVNLAVSLNATTDEVRDRIMPINRRYPLKELLAA 238

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           C+ +P L + R IT EYV+++ +NDS  DA  L++++  IP+K+NLIPFN   GC +   
Sbjct: 239 CKAFP-LPSRRWITMEYVLIRDLNDSLDDAKRLVRLISNIPSKVNLIPFNEHDGCSFKSP 297

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
            Q+ I  F + +     +   R+ RG DI AACGQLK    R+
Sbjct: 298 TQETIDRFHKYLLDKHVTVITRSSRGGDISAACGQLKGKLDRM 340


>gi|251791823|ref|YP_003006543.1| Cfr family radical SAM protein [Aggregatibacter aphrophilus NJ8700]
 gi|247533210|gb|ACS96456.1| radical SAM enzyme, Cfr family [Aggregatibacter aphrophilus NJ8700]
          Length = 311

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 136/295 (46%), Positives = 180/295 (61%), Gaps = 18/295 (6%)

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
           PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC+L C+FC 
Sbjct: 7   PEVAVEQRSADGTIKWAMQV------GDQQVETVYIPEADRATLCVSSQVGCALACTFCS 60

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VMMGMGEPL 
Sbjct: 61  TAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVMMGMGEPLL 110

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRN 252
           N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLHA +++LR+
Sbjct: 111 NVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRD 170

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIP 310
            +VP+N+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L ++LK  P
Sbjct: 171 EIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVEHAHQLAEVLKNTP 230

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            KINLIP+NP+P   Y  S    I  F + +   G +  +R  RG DI AACGQL
Sbjct: 231 CKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQL 285


>gi|149194715|ref|ZP_01871810.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2]
 gi|149135138|gb|EDM23619.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2]
          Length = 355

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 218/363 (60%), Gaps = 35/363 (9%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           L E LL++GI     + R  Q++ W+Y + + DF+ MS++ +++R  L + F I   E++
Sbjct: 8   LPEELLELGI---QPKFRVKQLYNWVYRKYVDDFEKMSNLPKDLREKLKKEFYINPLELI 64

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----------SRGTLCVSSQVGCS 125
           + +I+ DGT K+L +     +     IETV I  K           ++ T+CVS+QVGC 
Sbjct: 65  NHEIASDGTEKFLFK-----LNDNHTIETVLIKMKDDRVENGKKKEAKYTVCVSTQVGCK 119

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC T     VRNL+A EI+ QV   +     F   ++ + +          N+V M
Sbjct: 120 VGCAFCLTAKGGFVRNLSAGEIVAQVWFMKK----FKNFDENKAL----------NVVFM 165

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N++N+ K++ I + + GL+ + RR T+STSG  P I ++GEE +GV LAISLH
Sbjct: 166 GMGEPLDNYNNLVKAIKIIAHTDGLNIAPRRQTVSTSGIAPKIKKLGEENLGVNLAISLH 225

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV + LR  L+P+N+ Y ++ +I+A R +P +   +++ FEY+++K +ND+   A  L+K
Sbjct: 226 AVDDKLREQLIPLNKAYNIQSVIEAIREFP-IDKRKKVMFEYLVIKDVNDNLDSAKKLVK 284

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L GIP+K+NLI FNP+PG  +   D++ +  F   +   G +  IR  +G+DI AACGQ
Sbjct: 285 LLNGIPSKVNLIYFNPYPGSPFKRPDEETMKKFQRYLLDRGITCTIRQSKGIDISAACGQ 344

Query: 365 LKS 367
           L+ 
Sbjct: 345 LRE 347


>gi|281202992|gb|EFA77193.1| putative ribosomal RNA large subunit methyltransferase N
           [Polysphondylium pallidum PN500]
          Length = 361

 Score =  252 bits (643), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 150/372 (40%), Positives = 206/372 (55%), Gaps = 64/372 (17%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           K ++LIG+ +E+L + L ++G  Q +   R  QIW WIY +G ++    S++S   + LL
Sbjct: 43  KTKNLIGISKEDLTKQLTELGDFQSY---RIDQIWSWIYNKGQKNIDNFSNLSNVQKSLL 99

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +++ I Y  +  +++S DGTRK L+ F         ++ETV+IPE  RGTLCVSSQVGC
Sbjct: 100 KEYYHIDYGTLDSDQLSKDGTRKILVGFSGD------QVETVFIPEARRGTLCVSSQVGC 153

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +  C FC+TGTQ+LVRNL   EIL Q ++ARSL+ DF    +          R ISN+V 
Sbjct: 154 TFGCKFCFTGTQRLVRNLNVSEILGQFMMARSLMNDFGHTTE---------KRLISNVVF 204

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MGMGEPL N+     +L I +D  GLS SK RIT+STSG VP I R+G+E  G+ LAISL
Sbjct: 205 MGMGEPLMNYRAASAALRIMTDPNGLSLSKSRITVSTSGVVPLIERLGKEFPGIGLAISL 264

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N  R+ +VPIN+++P+E LI  C  +  L N  +IT          D P       
Sbjct: 265 HASNNKTRSEIVPINQQWPIEELIKTCIEFSKL-NTNKITI---------DKP------- 307

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
                                       + I  F+  I  +G    IR  RG DILAACG
Sbjct: 308 ----------------------------EKIKEFASIIANAGLKVTIRQSRGQDILAACG 339

Query: 364 QLKSLSKRIPKV 375
           QLK+ S ++ K 
Sbjct: 340 QLKTESVKVKKT 351


>gi|283852881|ref|ZP_06370142.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. FW1012B]
 gi|283571710|gb|EFC19709.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. FW1012B]
          Length = 350

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 139/360 (38%), Positives = 202/360 (56%), Gaps = 22/360 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +LI +   ELE  ++ +G P    R    Q+W+W++ +G RD   M+D S+ +R  L + 
Sbjct: 3   NLIDLTFHELETLVVSLGEPPYRAR----QVWQWLWQKGCRDIAAMTDTSKALRARLAEV 58

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            +I +P++     S DGT K+LL      +G    +E V IPEK   T C+S+QVGC++ 
Sbjct: 59  ATIAWPQVARVSESADGTVKFLL-----TLGDGESVECVLIPEKDHYTACLSTQVGCAMG 113

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC TG     RN+T  E+L QVL+AR  L            +   V   + N+V MGM
Sbjct: 114 CAFCATGMMGFRRNMTPGEMLGQVLVARQYL------------LEKGVALALRNLVFMGM 161

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N+DN+ K+L       G   S RRIT+ST+G   ++  +G      LA+SLHA +
Sbjct: 162 GEPLLNYDNLVKTLEALHHPQGFDISGRRITVSTAGVARHLLDLGRTGLCSLAVSLHAPT 221

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  ++P   K PL  LI+  R YP +    R+TFEY+ML G+NDS  DA  L+++L 
Sbjct: 222 QALREKIMPGAAKLPLGELIEILRQYP-MKPRERLTFEYLMLDGVNDSLEDARELVRLLS 280

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            + AK+NLI FN  PG  Y     + +  F E +K  G ++ +R  +G DI AACGQL++
Sbjct: 281 RVKAKVNLIVFNATPGLPYQPPPAERVFAFQEALKAKGLTATVRKSKGADIAAACGQLRA 340


>gi|302039009|ref|YP_003799331.1| ribosomal RNA large subunit methyltransferase N [Candidatus
           Nitrospira defluvii]
 gi|300607073|emb|CBK43406.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
           Nitrospira defluvii]
          Length = 366

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 148/378 (39%), Positives = 214/378 (56%), Gaps = 28/378 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + +L+ +   E+   +  +G P      R SQI +W+Y    R F  MS++SQ+ R  L 
Sbjct: 13  RTNLLALTESEMAAFVASLGWPA----YRASQILRWLYQERARTFAEMSNLSQKDREYLT 68

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I     V    S DGT+K +L      +    ++E V IP++ R TLC+S+QVGC+
Sbjct: 69  GSSRIERTSAVQIFSSQDGTKKLVL-----TLADGNQVECVLIPDEDRLTLCLSTQVGCT 123

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC TGT  L RNL A EI+ QVLLA+  L +               G++++N+V M
Sbjct: 124 LDCGFCLTGTLGLQRNLRAHEIIDQVLLAQDHLQE---------------GQRLTNLVFM 168

Query: 186 GMGEPLCNFDNVKKSLS-IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           GMGEPL N D V  +++ + + + GL FS RRIT+ST+G    I  V   + V LAISL+
Sbjct: 169 GMGEPLANLDAVADAVTRLTNQTWGLGFSGRRITISTAGLASRIKDVAP-LKVNLAISLN 227

Query: 245 AVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR+ L+P  NR + L+ L+ ACR YP L++  R+TFEYV+L  +ND   DA  L+
Sbjct: 228 ATTDALRDQLMPAANRLHSLDALLAACRAYP-LADRDRLTFEYVLLADVNDRTEDAARLV 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  K+NLI FNP+PG  Y       I TF + ++R      +R  RG D+L ACG
Sbjct: 287 KLLRGLRCKVNLIAFNPFPGNPYRRPSDAAIDTFQDTLRRGHVDVYLRRSRGRDVLGACG 346

Query: 364 QLKSLSKRIPKVPRQEMQ 381
           QL  L     +V   ++Q
Sbjct: 347 QLGRLDTSEAQVALTQIQ 364


>gi|83589757|ref|YP_429766.1| hypothetical protein Moth_0906 [Moorella thermoacetica ATCC 39073]
 gi|123752954|sp|Q2RK16|RLMN_MOOTA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|83572671|gb|ABC19223.1| 23S rRNA m(2)A-2503 methyltransferase [Moorella thermoacetica ATCC
           39073]
          Length = 354

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/368 (40%), Positives = 211/368 (57%), Gaps = 23/368 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L G++ +ELEE  +++G        R  QI++W++ R  +  + MSD+ +  R  L   
Sbjct: 6   DLRGLLPQELEELAVRLG----EAPYRGRQIFRWLHARRAKGIEVMSDLPRAFRERLALV 61

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQVGCS 125
             +    +++  ++ DG TRK LL       G  +E +  +Y   + R T C+SSQVGC+
Sbjct: 62  AELPPVRVLNRLVAADGLTRKLLLGLGD---GNSIECVLMIYKDGRRRNTACLSSQVGCA 118

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC TG   L RNLTA EI+LQ L   + L +  G            G +ISNIV M
Sbjct: 119 MGCSFCATGQGGLQRNLTASEIILQALALGAELAEGEG------------GNRISNIVFM 166

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
           GMGEPL N++ V K + I  D  G   S RRITLST G VP I R+  E+  + LA+SLH
Sbjct: 167 GMGEPLNNYEAVMKGVRIFEDPSGWGISHRRITLSTCGIVPGIERLAREKPPLELAVSLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV+N+LR+ L+PINR+YPLE LI ACR Y  ++  RR+TFEY ++ G+ND   DA  L +
Sbjct: 227 AVTNELRDKLMPINRRYPLEELIPACRRYAEITG-RRVTFEYALIAGVNDRREDARGLSR 285

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ + A +N+IP NP  G  +          F   ++ +G  + IR  RG DI AACGQ
Sbjct: 286 LLRDMLAFVNIIPLNPVAGSGFKGVPPAAARAFVALLQEAGLEAAIRDSRGQDIAAACGQ 345

Query: 365 LKSLSKRI 372
           L+  S+ +
Sbjct: 346 LRFASREV 353


>gi|224373787|ref|YP_002608159.1| ribosomal RNA large subunit methyltransferase N [Nautilia
           profundicola AmH]
 gi|259491991|sp|B9L721|RLMN_NAUPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|223590036|gb|ACM93772.1| radical SAM enzyme, Cfr family [Nautilia profundicola AmH]
          Length = 354

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 212/363 (58%), Gaps = 35/363 (9%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           L E L++ GI     + RT Q+++W+Y + + DF+ M +I ++++  L + F I   E++
Sbjct: 10  LPEELMEFGI---QPKFRTKQLYQWVYRKYVDDFEEMKNIPKDLKAKLKKEFIINPLELI 66

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----------SRGTLCVSSQVGCS 125
           + +I+ DGT K+L +           +ETV I  K           ++ T+CVS+QVGC 
Sbjct: 67  NHEIATDGTEKFLFKMHDNHT-----VETVLIKMKDEEIKDGKIKEAKYTVCVSTQVGCK 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC T     VRNL+A EI+ QV   +     F   ++           K  N+V M
Sbjct: 122 VGCAFCLTAKGGFVRNLSAGEIVAQVWWMKK----FKNFDE----------NKALNVVYM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N+D + K++ I ++  G++ S RR T+STSG  P I R+G E +GV LAISLH
Sbjct: 168 GMGEPLDNYDALVKAIKILANPDGMNISPRRQTVSTSGIAPKIKRLGNENLGVNLAISLH 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR  L+P+N+ Y +E +IDA R +P +   +++ FEY+++K +ND    A  L+K
Sbjct: 228 AVDDELREQLIPLNKAYNIESVIDAIREFP-IDKRKKVMFEYLVIKDVNDDIESAKKLVK 286

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L GIP+K+NLI FNP+PG  +   D   +  F + +   G    IR  +G+DI AACGQ
Sbjct: 287 LLNGIPSKVNLIYFNPYPGTNFKRPDDATMKKFQDYLINKGIMCTIRKSKGMDISAACGQ 346

Query: 365 LKS 367
           L+ 
Sbjct: 347 LRE 349


>gi|302392191|ref|YP_003828011.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM
           5501]
 gi|302204268|gb|ADL12946.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM
           5501]
          Length = 350

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 141/337 (41%), Positives = 201/337 (59%), Gaps = 19/337 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI+ WIY +G  +F+ M+++SQ +R  L     I     +    S DGT K+L   
Sbjct: 28  FRAEQIFNWIYKQGAVNFEEMTNLSQGLRSRLQSKAYIQQLTEITRAKSEDGTVKFLFEL 87

Query: 93  PARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                    EIETV++P +  R ++CVS+QVGC + C+FC TG Q L RNLT  EI+ Q+
Sbjct: 88  E-----DNKEIETVFLPYQDGRNSICVSTQVGCGMGCNFCATGQQGLERNLTTGEIVSQI 142

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L  + L+G   G +       PS+   ISN+V MGMGEPL N+DN  + + I +    L+
Sbjct: 143 LKVQQLMGS-NGYD-------PSL---ISNVVFMGMGEPLANYDNFLRVIDILNSEKALN 191

Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            S RRIT+ST G VP I R+ + E+ ++LAISLHA  + LR+ ++PIN++YPLE LI AC
Sbjct: 192 ISMRRITVSTCGLVPQIKRLADKELQLVLAISLHAAEDKLRSEMMPINKRYPLEELIAAC 251

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
            +Y   +N RRITFEY ++ G+N+  +DA  L ++L G+   +NLIP NP         +
Sbjct: 252 EYYLQKTN-RRITFEYALVDGVNNRRQDAEKLAQLLSGLLCHVNLIPVNPVKELGLTRPN 310

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +K I  F E + R    + +R  RG DI AACGQL++
Sbjct: 311 RKAIKEFKEILDRHNIQATVRQERGNDIEAACGQLRT 347


>gi|291276281|ref|YP_003516053.1| radical-SAM-proteins [Helicobacter mustelae 12198]
 gi|290963475|emb|CBG39305.1| Putative radical-SAM-proteins [Helicobacter mustelae 12198]
          Length = 379

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/354 (38%), Positives = 214/354 (60%), Gaps = 34/354 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI+ W+YV+  +DF  M ++ + +++ L++ + I + EI+  + SCDGT+K+L + 
Sbjct: 35  FRAKQIYHWLYVQYAQDFDVMHNLPKALKNKLSKDYRIKHLEIMKVETSCDGTKKYLFK- 93

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               + G    E+V I  +             SR T CVSSQ+GC + C+FC+T     V
Sbjct: 94  ---TLDGHT-FESVLIKMREEKIDCEGRIIHGSRYTFCVSSQIGCKVGCAFCFTAKGGFV 149

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL++ EI+ QVL  +            +  + P    K  NIV MGMGEPL N +NV +
Sbjct: 150 RNLSSGEIVEQVLQLKK-----------DNSLAPE---KRVNIVFMGMGEPLNNLENVAQ 195

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I S+  GLS S RR T+STSG  P IA++GE ++GV LAISLHAV ++LR+ L+P+N
Sbjct: 196 AIRIMSELDGLSISPRRQTISTSGIAPKIAKLGELDLGVQLAISLHAVDDELRSRLIPMN 255

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y ++ +IDA R +P +   +++ FEY+++K +ND  + A  L+K+L GI AK+NLI F
Sbjct: 256 KAYNIKSIIDAVRQFP-VDTRKKVMFEYLVIKDVNDDLKSAKILLKLLDGIRAKVNLILF 314

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
           NP  G E+   + + +  F++ + + G  + IR  RG+DI AACGQL+    ++
Sbjct: 315 NPHEGSEFQRPEMEQVKKFADFLVQRGLLATIRESRGIDISAACGQLREKETKV 368


>gi|332295839|ref|YP_004437762.1| Ribosomal RNA large subunit methyltransferase N [Thermodesulfobium
           narugense DSM 14796]
 gi|332178942|gb|AEE14631.1| Ribosomal RNA large subunit methyltransferase N [Thermodesulfobium
           narugense DSM 14796]
          Length = 353

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 213/368 (57%), Gaps = 27/368 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K S   +   ELE+    +G      + R +Q++ W+Y   I DF  MS++S  +R L
Sbjct: 1   MNKRSFFELSFSELEKFFTDLGFS----KYRANQVFSWVYKNNIYDFMQMSNLSLNLRDL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+  F + +P+I     S D + K+LL      +G    IETV+I  K+R T+C+SSQ+G
Sbjct: 57  LSSSFDLSFPKIQSTVESADNSFKFLLH-----LGENDFIETVFINHKNRNTICISSQIG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C  C TG     RNL   EI+LQV+              +E  V   +G KI NIV
Sbjct: 112 CPVGCVMCSTGKIGFKRNLKVSEIVLQVMA-------------VENFVRSKMG-KIDNIV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VMLAI 241
            MGMGEP+ NFDNV K++ I +D  G SFS RRI +STSGFV  I ++ +E+G  + LA+
Sbjct: 158 FMGMGEPMLNFDNVIKAIKILTDKNGKSFSPRRIVISTSGFVDGIKKL-KEVGLPIKLAV 216

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA ++++R+ L+PIN+ + +  LI A   Y  L++ RR+T+EYV+++ INDS +D + 
Sbjct: 217 SLHATTDEIRSKLIPINKTFGISELIKASEEY-ALASKRRVTYEYVLMESINDSDQDIIR 275

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LKG+ A +NL+ +N       + ++ + I  F + +   G  + IR  +G DI  A
Sbjct: 276 LKDLLKGLHAHVNLVKYNQSLSNVRIKTNIRRIKLFEKMLNNFGIKTTIRFSKGEDINGA 335

Query: 362 CGQLKSLS 369
           CGQL  LS
Sbjct: 336 CGQLALLS 343


>gi|34556516|ref|NP_906331.1| ribosomal RNA large subunit methyltransferase N [Wolinella
           succinogenes DSM 1740]
 gi|81833710|sp|Q7MSW1|RLMN_WOLSU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|34482230|emb|CAE09231.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 359

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 135/346 (39%), Positives = 205/346 (59%), Gaps = 24/346 (6%)

Query: 30  HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWL 89
           H   R  Q++ W+Y R   +F+ M ++S+E+R  L Q +S    ++V E++S DG+RK+L
Sbjct: 17  HPPFRAKQLYHWLYHRYEEEFEKMHNLSKEIRQKLTQDYSATLTKVVREEVSEDGSRKYL 76

Query: 90  LRFPARCIGGPVEIETVY--------IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
            +         V ++           I E  + T+CVSSQVGC + CSFC+T     VRN
Sbjct: 77  FQTHDGLTYEAVLLKMKEKKEDEEGRIVEGEKYTICVSSQVGCKVGCSFCFTAKGGFVRN 136

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L+A EI+ Q++  + L    P               K  NIV MGMGEPL NF+N+ +++
Sbjct: 137 LSAGEIVYQIVALKRLNALAP--------------EKRVNIVYMGMGEPLDNFENLIQAI 182

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRK 260
            I S+  GLS S +R T+STSG  P I ++G  ++GV LAISLHAV ++LR  L+P+N+ 
Sbjct: 183 RILSELDGLSISTKRQTISTSGIAPKIEKLGALDLGVQLAISLHAVDDELRTRLIPMNKA 242

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +  +I+A R +P + + +R+ FEY+++KG+ND  + A  L+K+L GI +K+NLI FNP
Sbjct: 243 YNIASIIEAVRRFP-IDSRKRVMFEYLVIKGVNDDEKSAKTLLKLLNGIKSKVNLIYFNP 301

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             G E+    +  +V F + +   G    IR  +G+DI AACGQL+
Sbjct: 302 HEGSEFERPLESKMVAFQKYLTDRGLLCTIRESKGIDISAACGQLR 347


>gi|94987122|ref|YP_595055.1| ribosomal RNA large subunit methyltransferase N [Lawsonia
           intracellularis PHE/MN1-00]
 gi|123082152|sp|Q1MQJ3|RLMN_LAWIP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|94731371|emb|CAJ54734.1| predicted Fe-S-cluster redox enzyme [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 358

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 142/339 (41%), Positives = 197/339 (58%), Gaps = 22/339 (6%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  QIW+W++ + I D + M+++ Q++R  L     I  PEIV  + S DGT+K+LLR  
Sbjct: 26  RAMQIWQWVWQKQITDIESMTNLPQKIRASLTALIKINLPEIVTIQQSSDGTKKFLLRLS 85

Query: 94  ARCIGGPVEIETVYIPEKSRG-----TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
              +     IETV IP   +      T C+SSQVGCS+ C+FC T T   +RNLTA EI+
Sbjct: 86  DGAL-----IETVLIPSIDKAGNIRITQCLSSQVGCSMGCTFCSTATMGFIRNLTAGEIV 140

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            QVLLA+  L D    + I           I NIV MGMGEPL N   + ++L I     
Sbjct: 141 SQVLLAKLHLNDNKPDKPI-----------IRNIVFMGMGEPLLNLTELTRALHILHSEK 189

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           GL+FS RRIT+ST G    I  + E     LA+SLHA + +LR+ ++P   K+ L+ LID
Sbjct: 190 GLNFSARRITVSTCGIKKGIQALSENGLAFLALSLHASNQELRSTIMPKAAKWDLKELID 249

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
             ++Y  L    +ITFEY++L GINDSP  A  L K++  I  K+NLIP+NP  G  YL 
Sbjct: 250 TLKNY-SLKKREKITFEYLLLGGINDSPEHAKELAKLITDIKGKLNLIPYNPAQGQPYLK 308

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             +++I+ F + +   G  + +R  +G DI AACGQLK+
Sbjct: 309 PTEENILKFQKVLWSKGIVTILRKSKGQDINAACGQLKT 347


>gi|298529502|ref|ZP_07016905.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510938|gb|EFI34841.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 332

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 140/332 (42%), Positives = 194/332 (58%), Gaps = 17/332 (5%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+W+WI+ +   DFQ M++IS+ +R  L Q F +  P +V +K S DGT K LL   
Sbjct: 14  RADQLWQWIWQKKAGDFQEMTNISKALRSSLQQEFVLQRPAVVQKKESIDGTVKLLL--- 70

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              +     IETV IPEK   T C+S+QVGC + C FC TG     RNLT  EI  QVL+
Sbjct: 71  --GLNDGFFIETVIIPEKDYYTQCISTQVGCPMGCVFCSTGCMGFKRNLTPGEIASQVLV 128

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
           A         C  +E   + S   +++N+V+MGMGEPL N+D VKK++ + +DS+GL  S
Sbjct: 129 A---------CRHLEDTGLDST--RLTNVVLMGMGEPLLNWDAVKKAMYMMTDSLGLGIS 177

Query: 214 KRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
           +RR+TLST G    +   G     MLA+SLHA   DLR  L+P    + ++ L+ A   Y
Sbjct: 178 RRRLTLSTVGVRDRLQEFGSSRLGMLAVSLHAPDQDLRRRLMPGAATWDIKDLVRALEQY 237

Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKD 333
           P L+   RIT EYV+LK INDSP  A  L+++L  +  K+NL+ +NP     Y    +K 
Sbjct: 238 P-LAPRERITIEYVLLKDINDSPAQARALVRLLSRVKCKVNLLAYNPGEQEGYQPPQEKT 296

Query: 334 IVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           I+TF E ++  G +  +R  +G DI AACGQL
Sbjct: 297 ILTFEEVLRSKGLTVTLRKSKGQDISAACGQL 328


>gi|303326495|ref|ZP_07356938.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3]
 gi|302864411|gb|EFL87342.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3]
          Length = 353

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 137/347 (39%), Positives = 198/347 (57%), Gaps = 30/347 (8%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           + R  Q+W+WI+ +  RDF  MS++S+  R  L +   I +PE+   + S DGT K+LLR
Sbjct: 24  KFRAVQVWQWIWQKMARDFDAMSNVSKACRARLAETARIDWPEVARVQESSDGTTKFLLR 83

Query: 92  FPARCIGGPVEIETVYIPEKSR-----GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
                +     +ETV IP  SR      T C+SSQVGC++ C+FC TG     RN+T  E
Sbjct: 84  LEDGAL-----VETVLIPSDSREGVRRWTQCLSSQVGCAMGCTFCATGDMGFERNMTMGE 138

Query: 147 ILLQVLLARSLLGD----FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202
           IL Q+L+AR  LGD    +P                + N+V MGMGEPL N   V ++L 
Sbjct: 139 ILGQILVAREHLGDNRPDWP---------------VLRNLVFMGMGEPLLNLREVMRALQ 183

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP 262
             ++  GL+FS RRIT+ST G    +A +G      LA+SLHA + +LR  ++P   ++P
Sbjct: 184 SLNNDKGLNFSPRRITVSTCGIEKGLAELGASGLAYLAVSLHAPTQELRARIMPKAARWP 243

Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322
           L+ L+ A + YP L    RITFEY++L GIND P  A  L +++  I  K+NLI +NP  
Sbjct: 244 LDQLLAALKSYP-LKTRERITFEYLLLGGINDGPGQAGELARLVADIKGKLNLIVYNPAE 302

Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           G  Y   D+  ++ F +C+ +   ++ +R  +G DI AACGQLK+ S
Sbjct: 303 GAPYAAPDEARVLAFEQCLWKRHITAIVRKSKGQDIKAACGQLKAAS 349


>gi|110802908|ref|YP_699026.1| ribosomal RNA large subunit methyltransferase N [Clostridium
           perfringens SM101]
 gi|123341702|sp|Q0SS81|RLMN_CLOPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|110683409|gb|ABG86779.1| radical SAM enzyme, Cfr family [Clostridium perfringens SM101]
          Length = 347

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 147/354 (41%), Positives = 209/354 (59%), Gaps = 29/354 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL+E + + G        R  QI+ WIY + + +F+ M +IS+ +   L+++F I  PE
Sbjct: 10  EELKEWMKENG----ENAFRAKQIFDWIYKKEVFNFEEMKNISKALIGKLSENFYIGIPE 65

Query: 75  IVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           ++D   S  DGTRK LL      +G    IE V +  K   ++CVS+Q+GC + C FC +
Sbjct: 66  VIDYLSSSEDGTRKILLG-----LGDGNIIECVIMKYKYGNSICVSTQIGCRMGCKFCAS 120

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
             + +VRNLTA EIL +VL+ + LLG+                 +ISNIV+MG GEPL N
Sbjct: 121 TLEGMVRNLTAGEILSEVLIGQKLLGE-----------------RISNIVLMGSGEPLDN 163

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252
           +DNV K L I +   GL+  +R ITLST G VP I  + + E+ V LAISLHAVS++ R 
Sbjct: 164 YDNVMKFLEIVNADYGLNIGQRHITLSTCGLVPKIREMADKEMQVTLAISLHAVSDEKRK 223

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            ++PI  KY +  ++DAC +Y      RRITFEY ++ G+ND+  DA +L ++LKG+   
Sbjct: 224 TIMPIANKYSISEILDACNYYIE-KTGRRITFEYSLVSGVNDTKEDAKSLGRLLKGMLCH 282

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +NLIP N     E+  S +KDI TF   +K  G  + +R   G DI AACGQL+
Sbjct: 283 VNLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQLR 336


>gi|55981906|ref|YP_145203.1| ribosomal RNA large subunit methyltransferase N [Thermus
           thermophilus HB8]
 gi|81363686|sp|Q5SGZ3|RLMN_THET8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|55773319|dbj|BAD71760.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 355

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 140/345 (40%), Positives = 197/345 (57%), Gaps = 27/345 (7%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R +QI  W+Y +G RDF  M+D+ + +R  L + + +    +V    S DG+ K+L    
Sbjct: 24  RRAQIAHWLYAKGARDFSEMTDLPKALREALAREWRLSEFSLVQAFPSQDGSVKYLFTL- 82

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              + G  + E VY+P ++R T+C+S+ VGC   C+FC TG     RNLTA EIL Q+L 
Sbjct: 83  ---LDGK-KTEAVYMPYENRKTVCLSTMVGCPAGCTFCATGALGFGRNLTAAEILDQLLT 138

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                G  P              R+I N+V+MGMGEPL N  NV K++ I      L+ S
Sbjct: 139 IAYHQGLSP--------------REIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALS 184

Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            RR+TLST G    I R+ EE +GV LA+SLHA  ++ R  ++P   +YP+  +++A RH
Sbjct: 185 PRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMEAVRH 244

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y      RR+TFEY +LKG+ND    A  L K+LKG+ A +NLIPFNPW G   + + + 
Sbjct: 245 YHA-KTKRRVTFEYTLLKGVNDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVVGTPRA 303

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
            ++ F+E +KR G  + IR  RG D+ AACGQL        KVPR
Sbjct: 304 GVLAFAEELKRLGVPTSIRWSRGQDVGAACGQLAL------KVPR 342


>gi|168214217|ref|ZP_02639842.1| radical SAM enzyme, Cfr family [Clostridium perfringens CPE str.
           F4969]
 gi|170714277|gb|EDT26459.1| radical SAM enzyme, Cfr family [Clostridium perfringens CPE str.
           F4969]
          Length = 347

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 146/354 (41%), Positives = 209/354 (59%), Gaps = 29/354 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL+E + + G        R  QI+ WIY + + +F+ M +IS+ +   L+++F I  PE
Sbjct: 10  EELKEWMKENG----ESAFRAKQIFDWIYKKEVFNFEEMKNISKALIGKLSENFYIGIPE 65

Query: 75  IVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           ++D   S  DGTRK LL      +G    IE V +  K   ++CVS+Q+GC + C FC +
Sbjct: 66  VIDYLSSSEDGTRKILLG-----LGDGNIIECVIMRYKYGNSICVSTQIGCRMGCKFCAS 120

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
             + +VRNLTA EIL +VL+ + LLG+                 +ISNIV+MG GEPL N
Sbjct: 121 TLEGMVRNLTAGEILSEVLIGQKLLGE-----------------RISNIVLMGSGEPLDN 163

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252
           +DNV K L + +   GL+  +R ITLST G VP I  + + E+ V LAISLHAVS++ R 
Sbjct: 164 YDNVMKFLELVNADYGLNIGQRHITLSTCGLVPKIHEMADKEMQVTLAISLHAVSDEKRK 223

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            ++PI  KY +  ++DAC +Y      RRITFEY ++ G+ND+  DA +L ++LKG+   
Sbjct: 224 TIMPIANKYSISEILDACNYYIE-KTGRRITFEYSLVSGVNDTKEDAKSLGRLLKGMLCH 282

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +NLIP N     E+  S +KDI TF   +K  G  + +R   G DI AACGQL+
Sbjct: 283 VNLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQLR 336


>gi|313681247|ref|YP_004058985.1| 23S rRNA m(2)a-2503 methyltransferase [Sulfuricurvum kujiense DSM
           16994]
 gi|313154107|gb|ADR32785.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfuricurvum kujiense DSM
           16994]
          Length = 354

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 140/349 (40%), Positives = 198/349 (56%), Gaps = 30/349 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QIW WIY +    F+ M ++ + +R  L Q + I+  +I  ++ S DGT K+L   
Sbjct: 22  FRAKQIWGWIYHQYATSFETMQNLPKTMREELAQTYEIMPLKIARKECSTDGTIKYLFEL 81

Query: 93  PARCIGGPVEI-----------ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                G  VE            E   I  ++R T+CVS+QVGC + CSFC T      R+
Sbjct: 82  SD---GKTVETVWLKMKDESIDEEGNIEHEARYTVCVSTQVGCKVGCSFCLTAKGGFTRD 138

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           LTA EI+ QVL  +              M       +  NIV MGMGEPL N DN+ K++
Sbjct: 139 LTAGEIVAQVLAVK--------------MDNNLAAHRRLNIVYMGMGEPLDNLDNLAKAI 184

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRK 260
           +I  D  GLS S +R T+STSG    I ++GE ++GV +AISLHAV ++LR  L+P+N+ 
Sbjct: 185 TILKDEEGLSISGKRQTVSTSGLSTKIDKLGEMDLGVHIAISLHAVDDELRTELIPMNKA 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +  +IDA + +P +   +R+ FEY+++K  ND    A  L+K+L GI AK+NLI FNP
Sbjct: 245 YNIASIIDAVKRFP-IDTRKRVMFEYLVIKNKNDDLGSAKKLVKLLHGIKAKVNLIYFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           +PG +Y    ++D+V F E + + G    IR  +GLDI AACGQLK  S
Sbjct: 304 YPGSDYQRPSREDMVAFQEYLIKHGVLCTIRDSKGLDISAACGQLKEKS 352


>gi|297182513|gb|ADI18675.1| predicted Fe-S cluster redox enzyme [uncultured Acidobacteria
           bacterium HF4000_26D02]
          Length = 384

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 143/352 (40%), Positives = 202/352 (57%), Gaps = 28/352 (7%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           ELE  +  +G+ + H R    QI++WIY RG+  F  M+D+S  VR  L    +I  P +
Sbjct: 40  ELEAVVSTLGVERFHAR----QIYRWIYRRGLERFDRMTDLSLPVREQLEAALTITTPAV 95

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
              + S DGT+K+L+      +     IE+V+IP+    T CVS+QVGC++ C FC TG 
Sbjct: 96  RTREQSSDGTQKFLV-----TLADGRTIESVFIPDTPAMTFCVSTQVGCAMRCGFCLTGQ 150

Query: 136 QKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
             LVRNL+A EI  QV +LAR L                 +  +  NIV+MGMGEPL N+
Sbjct: 151 MGLVRNLSAGEIAGQVRVLAREL----------------ELQDRRFNIVLMGMGEPLHNY 194

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV-MLAISLHAVSNDLRNI 253
           D   K+L I +   GL+ + RR+TLST G +P + R+  E  +  LAISLHA ++ LR+ 
Sbjct: 195 DATMKALRILAAPAGLALTPRRVTLSTIGILPALERLAHEPWLPNLAISLHATTDRLRHE 254

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           L+P +R   L  L   CR +P + +  RITFEYV+L G+ND+  DA  L K+L+G+ AK+
Sbjct: 255 LIPTSRTQRLGDLAAVCRRFP-VKHRDRITFEYVLLAGVNDTEADATRLPKLLRGLRAKV 313

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           NLIP N  PG  +     + +  F+  +  +G    +R  RG DI AACGQL
Sbjct: 314 NLIPLNEAPGIPFSRPSDRRVDWFARSLASAGLRVSVRKSRGRDIRAACGQL 365


>gi|162453111|ref|YP_001615478.1| radical SAM superfamily protein [Sorangium cellulosum 'So ce 56']
 gi|205829655|sp|A9FFJ6|RLMN_SORC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|161163693|emb|CAN94998.1| Radical SAM superfamily protein [Sorangium cellulosum 'So ce 56']
          Length = 389

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 149/379 (39%), Positives = 208/379 (54%), Gaps = 62/379 (16%)

Query: 37  QIWKWIYVRGIRDFQGMSDISQEVR-HLLNQHFS-IIYPEIVDEKISCDGTRKWLLRFPA 94
           Q+++WI+ RG+ D   M+++   +R HL  +    ++ PE V    S DGTRK LLR   
Sbjct: 32  QVFQWIHRRGVLDPAAMTNLPARLREHLAAEGLGEVLTPERVHR--SEDGTRKLLLR--- 86

Query: 95  RCIGGPVEIETVYIPEKS----------------------------------RGTLCVSS 120
             +     IETV +P  S                                  R T C+S+
Sbjct: 87  --LRDGATIETVLLPSVSGPGSQAQLDADAAAALDDDEDDDAAAEAGAAPRVRVTQCIST 144

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C FC +G   L R+L AEEI  QVLL R++L +               G ++ 
Sbjct: 145 QVGCAMGCGFCASGVAGLKRHLGAEEIAGQVLLGRAMLEE---------------GEELR 189

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VM 238
           N+V MGMGEPL N++   +SL + +   G++ S RR+T+STSG VP IAR+G + G  + 
Sbjct: 190 NVVYMGMGEPLHNYEATARSLRLLTHPEGINLSTRRVTVSTSGLVPEIARLGADFGGQIA 249

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLHA  ++ R+ L+PINRK+PL+ L+ A R YP L   RRIT EY ++ G ND P +
Sbjct: 250 LAISLHAADDETRSALMPINRKHPLDELLAALRAYP-LPRRRRITIEYTLVAGQNDDPAE 308

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L K+L+G+P KINLIP NP          Q+ +  F E + ++GYS  +R  RG D+
Sbjct: 309 ARRLAKLLRGLPVKINLIPMNPIEASSLGPPAQERVAAFQEVLTQAGYSCFVRRRRGDDV 368

Query: 359 LAACGQLKSLSKRIPKVPR 377
            AACGQL  L  + PKV R
Sbjct: 369 SAACGQLVLLGAK-PKVRR 386


>gi|18310722|ref|NP_562656.1| radical SAM enzyme, Cfr family [Clostridium perfringens str. 13]
 gi|110801148|ref|YP_696426.1| radical SAM protein [Clostridium perfringens ATCC 13124]
 gi|168207267|ref|ZP_02633272.1| radical SAM enzyme, Cfr family [Clostridium perfringens E str.
           JGS1987]
 gi|168210627|ref|ZP_02636252.1| radical SAM enzyme, Cfr family [Clostridium perfringens B str. ATCC
           3626]
 gi|168217027|ref|ZP_02642652.1| radical SAM enzyme, Cfr family [Clostridium perfringens NCTC 8239]
 gi|182625883|ref|ZP_02953649.1| radical SAM enzyme, Cfr family [Clostridium perfringens D str.
           JGS1721]
 gi|81766963|sp|Q8XJL6|RLMN_CLOPE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123049744|sp|Q0TPL4|RLMN_CLOP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|18145403|dbj|BAB81446.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110675795|gb|ABG84782.1| radical SAM enzyme, Cfr family [Clostridium perfringens ATCC 13124]
 gi|170661362|gb|EDT14045.1| radical SAM enzyme, Cfr family [Clostridium perfringens E str.
           JGS1987]
 gi|170711321|gb|EDT23503.1| radical SAM enzyme, Cfr family [Clostridium perfringens B str. ATCC
           3626]
 gi|177908917|gb|EDT71409.1| radical SAM enzyme, Cfr family [Clostridium perfringens D str.
           JGS1721]
 gi|182380930|gb|EDT78409.1| radical SAM enzyme, Cfr family [Clostridium perfringens NCTC 8239]
          Length = 347

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 146/354 (41%), Positives = 209/354 (59%), Gaps = 29/354 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL+E + + G        R  QI+ WIY + + +F+ M +IS+ +   L+++F I  PE
Sbjct: 10  EELKEWMKENG----ESAFRAKQIFDWIYKKEVFNFEEMKNISKALIGKLSENFYIGIPE 65

Query: 75  IVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           ++D   S  DGTRK LL      +G    IE V +  K   ++CVS+Q+GC + C FC +
Sbjct: 66  VIDYLSSSEDGTRKILL-----GLGDGNIIECVIMRYKYGNSICVSTQIGCRMGCKFCAS 120

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
             + +VRNLTA EIL +VL+ + LLG+                 +ISNIV+MG GEPL N
Sbjct: 121 TLEGMVRNLTAGEILSEVLIGQKLLGE-----------------RISNIVLMGSGEPLDN 163

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252
           +DNV K L + +   GL+  +R ITLST G VP I  + + E+ V LAISLHAVS++ R 
Sbjct: 164 YDNVMKFLELVNADYGLNIGQRHITLSTCGLVPKIREMADKEMQVTLAISLHAVSDEKRK 223

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            ++PI  KY +  ++DAC +Y      RRITFEY ++ G+ND+  DA +L ++LKG+   
Sbjct: 224 TIMPIANKYSISEILDACNYYIE-KTGRRITFEYSLVSGVNDTKEDAKSLGRLLKGMLCH 282

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +NLIP N     E+  S +KDI TF   +K  G  + +R   G DI AACGQL+
Sbjct: 283 VNLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQLR 336


>gi|46199876|ref|YP_005543.1| florfenicol resistance protein [Thermus thermophilus HB27]
 gi|81567593|sp|Q72HC1|RLMN_THET2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|46197503|gb|AAS81916.1| florfenicol resistance protein [Thermus thermophilus HB27]
          Length = 355

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 140/345 (40%), Positives = 196/345 (56%), Gaps = 27/345 (7%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R +QI  W+Y +G RDF  M+D+ + +R  L + + +    +V    S DG+ K+L    
Sbjct: 24  RRAQIAHWLYAKGARDFSEMTDLPKALREALAREWRLSEFSLVQAFPSQDGSVKYLFTL- 82

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              + G  + E VY+P ++R T+C+S+ VGC   C+FC TG     RNLTA EIL Q+L 
Sbjct: 83  ---LDGK-KTEAVYMPYENRKTVCLSTMVGCPAGCTFCATGALGFGRNLTAAEILDQLLT 138

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                G  P              R+I N+V+MGMGEPL N  NV K++ I      L+ S
Sbjct: 139 IAYHQGLSP--------------REIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALS 184

Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            RR+TLST G    I R+ EE +GV LA+SLHA  ++ R  ++P   +YP+  +++A RH
Sbjct: 185 PRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMEAVRH 244

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y      RR+TFEY +LKG+ND    A  L K+LKG+ A +NLIPFNPW G     + + 
Sbjct: 245 YHA-KTKRRVTFEYTLLKGVNDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVAGTPKA 303

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
            ++ F+E +KR G  + IR  RG D+ AACGQL        KVPR
Sbjct: 304 GVLAFAEELKRLGVPTSIRWSRGQDVGAACGQLAL------KVPR 342


>gi|217967818|ref|YP_002353324.1| radical SAM enzyme, Cfr family [Dictyoglomus turgidum DSM 6724]
 gi|254807171|sp|B8E0X3|RLMN_DICTD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|217336917|gb|ACK42710.1| radical SAM enzyme, Cfr family [Dictyoglomus turgidum DSM 6724]
          Length = 348

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 140/337 (41%), Positives = 203/337 (60%), Gaps = 24/337 (7%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRF 92
           R  QI+ WIY + + +   M+++S+ +R  L ++FS   P++V  +I+ DG T+K+LL  
Sbjct: 25  RADQIFDWIYKKLVLNPLDMTNLSKTLRQKLLEYFSFQIPKVV--RITGDGNTKKYLLEL 82

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                     IETV I  K+R T+CVS QVGC + C FC TG   L RNL   EI+ Q++
Sbjct: 83  E-----DGENIETVLISHKNRNTVCVSVQVGCPIGCKFCATGLIGLKRNLETHEIIGQLM 137

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           + +         ED+E         KISN+V MGMGEPL N+DNV KS+ I  +  G + 
Sbjct: 138 VIQ---------EDLE-----KKEEKISNVVYMGMGEPLANYDNVIKSIRIIKEEWGFNI 183

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             + ITLST G +P I ++ EE + + LAISLHA +N+LR+ ++PIN++YP+E L+++  
Sbjct: 184 GSKHITLSTIGIIPKIYQLAEENLKIRLAISLHASNNELRSKIIPINKEYPIEELLESAF 243

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RR+TFEYV++K  ND   DA  L+++LKG PA +NLIP+N      +  SD 
Sbjct: 244 YYAE-KTGRRVTFEYVLIKNFNDRREDAKELVRLLKGKPAHVNLIPWNKVREYPWETSDL 302

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           KDI  F E +  SG +  +R   G  I A CGQL++L
Sbjct: 303 KDIFRFKEILANSGINVTLRISYGSKIKAGCGQLRAL 339


>gi|320451516|ref|YP_004203612.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01]
 gi|320151685|gb|ADW23063.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01]
          Length = 349

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 140/333 (42%), Positives = 190/333 (57%), Gaps = 21/333 (6%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R +QI  W+Y RG  DF  M+D+ +  R  L   + I    +V+   S DG+ K+L    
Sbjct: 18  RKAQIAHWLYARGAMDFSEMTDLPKGFREALAGEWRISEFALVEAYPSRDGSVKYLFTL- 76

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              + G  + E VY+P ++R T+C+SS VGC   C+FC TG     RNLTA EIL Q+L 
Sbjct: 77  ---LDGK-KTEAVYMPYENRKTVCLSSMVGCPAGCTFCATGALGFGRNLTAAEILSQLLA 132

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                G  P              R I N+V+MGMGEPL N  NV K++       GL+ S
Sbjct: 133 IAHHQGISP--------------RDIRNVVLMGMGEPLLNLGNVLKAIRTMLHPKGLAMS 178

Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            RRITLST G    I R+ EE +GV LA+SLHA  ++ R  ++P   +Y +  +++A RH
Sbjct: 179 PRRITLSTVGIPKGIHRLAEEDLGVRLALSLHAPDDETRRKIIPTAHRYSVGEILEAVRH 238

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +  RR+TFEY +LKG+ND P  A  L K+LKGI A +NLIPFNPW G     + + 
Sbjct: 239 YYARTK-RRVTFEYTLLKGLNDHPWQARLLAKLLKGISAHVNLIPFNPWEGAPVEGTPKA 297

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I+ F+E ++R G  + IR  RG D+ AACGQL
Sbjct: 298 GILAFAEELRRLGIPTSIRFSRGQDVGAACGQL 330


>gi|257461212|ref|ZP_05626310.1| radical SAM enzyme, Cfr family [Campylobacter gracilis RM3268]
 gi|257441586|gb|EEV16731.1| radical SAM enzyme, Cfr family [Campylobacter gracilis RM3268]
          Length = 369

 Score =  245 bits (626), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 139/349 (39%), Positives = 203/349 (58%), Gaps = 34/349 (9%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           + R  QI++WIY + + DF  M ++ +E+R  L Q+F +   + V  + S DG+ K+L  
Sbjct: 19  KFRAKQIYEWIYKKNVDDFAQMLNLPKEIRQSLAQNFYLDPLKCVRSETSSDGSIKYLF- 77

Query: 92  FPARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKL 138
                +     IE+V +P K             +R ++CVSSQVGC + CSFC T     
Sbjct: 78  ----ALKDGKTIESVLLPMKDELRDENEKIIRHARYSICVSSQVGCKIGCSFCLTAKGGF 133

Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198
           VRNLT  EI+ Q+ L + +              IP   R   N+V MGMGEPL N DNV 
Sbjct: 134 VRNLTPGEIVAQIWLIKKM------------NAIPYERR--VNVVYMGMGEPLNNLDNVA 179

Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPI 257
           K++ I  ++ GL+ + RR T+STSG    I ++GE ++GV+LAISLHAV ++LR  L+PI
Sbjct: 180 KAVQILKENDGLAIAPRRQTISTSGLSTQIKKLGEMDLGVLLAISLHAVDDELREKLMPI 239

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
           NR Y +  ++ A R +P +   +R+ FEY+M+ G+ND P DA  L+K+L GI AK+NLI 
Sbjct: 240 NRAYNIASIMQAVREFP-IDLRKRVMFEYLMIDGVNDRPSDAKTLVKLLHGIRAKVNLIY 298

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           FNP  G  +     ++++ F + +   G +  IR  +GLDI AACGQLK
Sbjct: 299 FNPHEGSSFGRPSPENMIKFQDYLCAHGITCTIRQSKGLDISAACGQLK 347


>gi|258406363|ref|YP_003199105.1| ribosomal RNA large subunit methyltransferase N [Desulfohalobium
           retbaense DSM 5692]
 gi|257798590|gb|ACV69527.1| radical SAM enzyme, Cfr family [Desulfohalobium retbaense DSM 5692]
          Length = 359

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 135/354 (38%), Positives = 202/354 (57%), Gaps = 23/354 (6%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           ++L   L + G P    R R  QIW+W++++G   F+ M+++S+ +R  L+Q F I  P 
Sbjct: 12  DDLAAWLTEQGQP----RFRAEQIWQWLWIKGATSFEDMTNVSKSLRSALSQVFPIALPT 67

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
           + +   S DGTRK+LL      +     +ETV IP     T C+S+QVGC+L C+FC TG
Sbjct: 68  VAEVHTSADGTRKFLLNLHDGHV-----LETVLIPGGEHFTQCLSTQVGCNLGCTFCSTG 122

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNL+A EI  QV++AR+ L                 G ++ N+V MGMGEPL N+
Sbjct: 123 QMGLTRNLSAAEIAGQVIVARNHLWQ------------TGTGMRLRNLVFMGMGEPLLNW 170

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNIL 254
           +NV  +L     +  ++FS RR+T+ST G    +  +G      LA+SLHA + +LR  +
Sbjct: 171 ENVDNALDRLIHASAMNFSPRRVTVSTVGVPGTLDALGHSHKASLAVSLHAPNQELREKI 230

Query: 255 VP-INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           +P   R  PL  L+   R YP ++  +R+T EYV+L G+NDS   A  L++ L GI  K+
Sbjct: 231 MPRAARMLPLPDLLARLRSYP-MAPRQRVTIEYVLLGGVNDSLDQARQLVRCLNGIRCKV 289

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           NLI FNP PG  Y   + + ++ F   ++  G ++ +R  +G DI AACGQLK+
Sbjct: 290 NLIAFNPCPGLPYSAPETEQVLAFETLLRDKGLTATLRKSKGQDISAACGQLKT 343


>gi|331269682|ref|YP_004396174.1| radical SAM enzyme, Cfr family [Clostridium botulinum BKT015925]
 gi|329126232|gb|AEB76177.1| radical SAM enzyme, Cfr family [Clostridium botulinum BKT015925]
          Length = 343

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 134/337 (39%), Positives = 195/337 (57%), Gaps = 25/337 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-KISCDGTRKWLL 90
           + R  QI++WIY + I +F  M++IS+  +  L   F I  P I+++ K + DGT K+L 
Sbjct: 23  KFRAKQIFEWIYKKAIFNFDEMTNISKASKEKLKNSFYIEIPNIMEKYKSNIDGTEKFLF 82

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
            +    I     IE+V +  K   ++CVS+Q+GC + C FC +    +VRNLT+ EI  Q
Sbjct: 83  EYKDGNI-----IESVVMRYKHGNSICVSTQIGCRMGCKFCASTVDGVVRNLTSGEIAAQ 137

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           +L A+                   +G +ISN+V+MG GEPL N+DNV K + + +D   L
Sbjct: 138 ILKAQQ-----------------EIGERISNVVLMGSGEPLDNYDNVLKFIKLINDDNAL 180

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
              +R ITLST G VP I  + +E + + LAISLHA ++D+R  ++P+  KY +  L+DA
Sbjct: 181 KIGQRHITLSTCGIVPKIKELADEKLQITLAISLHAPNDDIRKSMMPVANKYNINELLDA 240

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           C++Y  ++N RRITFEY ++ GINDS ++A  L   LKGI   INLIP N     +Y  S
Sbjct: 241 CKYYSKITN-RRITFEYALVNGINDSAKNAEELFNQLKGILCHINLIPVNEIKENDYKRS 299

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             KDI  F   + + G  + IR   G DI  ACGQL+
Sbjct: 300 GAKDIEEFKNILNKYGIETTIRREMGSDINGACGQLR 336


>gi|20807945|ref|NP_623116.1| Fe-S-cluster redox protein [Thermoanaerobacter tengcongensis MB4]
 gi|81590646|sp|Q8R9T4|RLMN_THETN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|20516515|gb|AAM24720.1| predicted Fe-S-cluster redox enzyme [Thermoanaerobacter
           tengcongensis MB4]
          Length = 342

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 145/361 (40%), Positives = 205/361 (56%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  M  EE+EE  + +G      + R  Q++KWIY + + DF  M+DIS+ +R  L + 
Sbjct: 3   NLKDMTLEEMEEFFVNLG----ESKFRAKQLYKWIYDKRVTDFDLMTDISKNLRAKLKEI 58

Query: 68  FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   +I++ ++S  D T K+L     + I     IE V I  K   T CVS+QVGC++
Sbjct: 59  AYISELKIIERRVSQIDDTVKYLFLLEDKNI-----IEGVAIKYKFGNTACVSTQVGCNM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +     VR+L A E++ QV                  M I S   KISNIV+MG
Sbjct: 114 KCKFCASAIGGKVRDLKASEMVDQV------------------MAIDSDYGKISNIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
            GEP  N+D V K + I ++  GL   KR IT+ST G VP I +   EE+ V L+ISLHA
Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+LRN L+PINR YPLE L+ ACR+Y   +N RRITFEY ++ G+ND    A  L+ +
Sbjct: 216 PNNELRNELMPINRAYPLEELMKACRYYIEKTN-RRITFEYALIDGVNDKKEHAYQLVDL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N      +  S+ + ++ F + I+ +G +  +R   G DI AACGQL
Sbjct: 275 LKGMLCHVNLIPINYVKEIGFRKSNNEKVMMFKKIIENAGITCTVRRELGSDIEAACGQL 334

Query: 366 K 366
           +
Sbjct: 335 R 335


>gi|213421342|ref|ZP_03354408.1| hypothetical protein Salmonentericaenterica_27889 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 317

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/322 (43%), Positives = 187/322 (58%), Gaps = 22/322 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +N   K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +
Sbjct: 16  LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSS
Sbjct: 72  RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSS 125

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C FC T  Q   RNL   EI+ QV  A  ++G       + G       R I+
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPIT 175

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LA
Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 235

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298
           ISLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    
Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295

Query: 299 ALNLIKILKGIPAKINLIPFNP 320
           A  L ++LK  P KINLIP+NP
Sbjct: 296 AHQLAELLKETPCKINLIPWNP 317


>gi|18406673|ref|NP_564755.1| radical SAM domain-containing protein [Arabidopsis thaliana]
 gi|15451230|gb|AAK96886.1| Unknown protein [Arabidopsis thaliana]
 gi|20148295|gb|AAM10038.1| unknown protein [Arabidopsis thaliana]
 gi|332195547|gb|AEE33668.1| radical SAM domain-containing protein [Arabidopsis thaliana]
          Length = 458

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/380 (37%), Positives = 212/380 (55%), Gaps = 29/380 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRH 62
           +K  L GM    L+E +   G       M    +WK +Y   I   +   +  ++++++ 
Sbjct: 93  QKVVLKGMTYASLQEWVQSHGFRPGQALM----LWKRLYKDNIWANNVDELEGLNKDLKR 148

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121
           ++++H         D + + DGTRK L       +     IETV IP ++ R T+CVSSQ
Sbjct: 149 MISEHAEFGALSFKDIRSASDGTRKILFTLDDGLV-----IETVVIPCDRGRTTVCVSSQ 203

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C FCYTG   L RNLT  EI+ Q + AR LL    G               I+N
Sbjct: 204 VGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVG--------------SITN 249

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +V MGMGEP  N DNV K+ +I  D  GL FS R++T+STSG VP + R   E    LA+
Sbjct: 250 VVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAV 309

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SL+A ++++RN ++PINRKY L +L++  R      +  ++ FEYVML G+NDS  DA  
Sbjct: 310 SLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDARR 369

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++++GIP KINLI FNP  G +++ +++  ++ F   +   G +  +R  RG D +AA
Sbjct: 370 LVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAA 429

Query: 362 CGQL---KSLSKRIPKVPRQ 378
           CGQL    ++   + +VP Q
Sbjct: 430 CGQLGMIGAVQAPVMRVPEQ 449


>gi|303246742|ref|ZP_07333019.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ]
 gi|302491759|gb|EFL51639.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ]
          Length = 350

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/360 (38%), Positives = 204/360 (56%), Gaps = 22/360 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +LI +   ELE  ++ +G P    R    Q+W+W++ +G RD   M+D+S+ +R  L + 
Sbjct: 3   NLIDLTFHELEALIVSLGEPPYRAR----QVWQWLWQKGCRDIGRMTDVSKALRSRLGEV 58

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            +I +P+++    S DGT K+LL      +     +E V IPEK   T C+S+QVGC++ 
Sbjct: 59  ATIAWPDVLRVSESADGTVKFLL-----GLSDGEAVECVLIPEKDHYTACLSTQVGCAMG 113

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG     RN+T  E+L QVL+AR  L D       +G  +      + N+V MGM
Sbjct: 114 CGFCATGMLGFRRNMTPGEMLGQVLVARQYLLD-------KGEAL-----ALRNLVFMGM 161

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N+DN+ K+L       GL FS RRIT+ST+G   N+  +G      LA+SLHA +
Sbjct: 162 GEPLLNYDNLVKTLEALHHPQGLDFSGRRITVSTAGVRRNLLELGRTGLCSLAVSLHAPT 221

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
            + R  ++P   K PL  L+   R YP L    R+TFEY++L G+ND+  DA  L+++L 
Sbjct: 222 QEKRARIMPGAAKLPLSELMGILREYP-LKPRERLTFEYLLLDGVNDADADARELVRLLS 280

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            + AK+NLI +N  PG  +       +  F E +K  G ++ IR  +G DI AACGQL++
Sbjct: 281 TVKAKVNLIVYNATPGLPFRQPAAGRVAAFQEILKAKGITATIRKSKGADIAAACGQLRA 340


>gi|3249072|gb|AAC24056.1| Contains similarity to hypothetical 43.1 KD protein in NDK-GCPE
           intergenic region gb|493519 from E. coli sequence
           gb|U02965 [Arabidopsis thaliana]
          Length = 454

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/380 (37%), Positives = 212/380 (55%), Gaps = 29/380 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRH 62
           +K  L GM    L+E +   G       M    +WK +Y   I   +   +  ++++++ 
Sbjct: 89  QKVVLKGMTYASLQEWVQSHGFRPGQALM----LWKRLYKDNIWANNVDELEGLNKDLKR 144

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121
           ++++H         D + + DGTRK L       +     IETV IP ++ R T+CVSSQ
Sbjct: 145 MISEHAEFGALSFKDIRSASDGTRKILFTLDDGLV-----IETVVIPCDRGRTTVCVSSQ 199

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C FCYTG   L RNLT  EI+ Q + AR LL    G               I+N
Sbjct: 200 VGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVG--------------SITN 245

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +V MGMGEP  N DNV K+ +I  D  GL FS R++T+STSG VP + R   E    LA+
Sbjct: 246 VVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAV 305

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SL+A ++++RN ++PINRKY L +L++  R      +  ++ FEYVML G+NDS  DA  
Sbjct: 306 SLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDARR 365

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++++GIP KINLI FNP  G +++ +++  ++ F   +   G +  +R  RG D +AA
Sbjct: 366 LVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAA 425

Query: 362 CGQL---KSLSKRIPKVPRQ 378
           CGQL    ++   + +VP Q
Sbjct: 426 CGQLGMIGAVQAPVMRVPEQ 445


>gi|297837501|ref|XP_002886632.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332473|gb|EFH62891.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 458

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/380 (37%), Positives = 212/380 (55%), Gaps = 29/380 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRH 62
           +K  L GM    L+E +   G       M    +WK +Y   I   +   +  ++++++ 
Sbjct: 93  QKVILKGMTYAALQEWVQSHGFRPGQALM----LWKRLYKDNIWANNVDELEGLNKDLKR 148

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121
           ++++H         D + + DGTRK L       +     IETV IP ++ R T+CVSSQ
Sbjct: 149 MISEHAEFGALSFKDIRSASDGTRKILFTLDDGLV-----IETVVIPCDRGRTTVCVSSQ 203

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C FCYTG   L RNLT  EI+ Q + AR LL    G               I+N
Sbjct: 204 VGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVG--------------SITN 249

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +V MGMGEP  N DNV K+ +I  D  GL FS R++T+STSG VP + R   E    LA+
Sbjct: 250 VVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAV 309

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SL+A ++++RN ++PINRKY L +L++  R      +  ++ FEYVML G+NDS  DA  
Sbjct: 310 SLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSKHKYKVLFEYVMLAGVNDSMDDARR 369

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++++GIP KINLI FNP  G +++ +++  ++ F   +   G +  +R  RG D +AA
Sbjct: 370 LVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAA 429

Query: 362 CGQL---KSLSKRIPKVPRQ 378
           CGQL    ++   + +VP Q
Sbjct: 430 CGQLGMIGAVQAPVMRVPEQ 449


>gi|114775703|ref|ZP_01451271.1| hypothetical protein SPV1_05223 [Mariprofundus ferrooxydans PV-1]
 gi|114553814|gb|EAU56195.1| hypothetical protein SPV1_05223 [Mariprofundus ferrooxydans PV-1]
          Length = 364

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/341 (40%), Positives = 197/341 (57%), Gaps = 11/341 (3%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           + R  Q+  W   +GI +   M +I   +R  L          ++  + S DGTRK++  
Sbjct: 34  KFRAKQVLDWCN-KGILNPALMKNIPDALRDRLLTSLMCEPLRLIRRECSTDGTRKYVFA 92

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                + G + IE V+IPE+ RGT+C+SSQVGC L C FC+TGTQ    NL+A EI+ QV
Sbjct: 93  LNRPRLAGKM-IEAVFIPEEKRGTVCISSQVGCVLDCPFCHTGTQGFEGNLSAGEIVAQV 151

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L  ++ L   P  +D+           +++IV MGMGEPL N + V  SL+I  D  GL 
Sbjct: 152 LAIKADLRHEPMTDDLHN--------DVTHIVYMGMGEPLANEEGVHGSLAILMDEDGLK 203

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+RRIT+STSG  P I R+G    V LAISLH+  ++ R++LVPINRK+PL  L +   
Sbjct: 204 LSRRRITVSTSGLTPQIERLGAVHPVNLAISLHSAIDEKRDLLVPINRKHPLAQLRECLD 263

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            YP L+  R IT EYV+L G+ND   D   L + +      +NLI FNP+PG  Y  + +
Sbjct: 264 AYP-LATQRHITLEYVLLDGVNDQAEDLAALARFVNPEREWVNLIQFNPYPGTSYRGTAK 322

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
           + +  F++ +   G  + +R  RG DI+AACGQLK+ +K +
Sbjct: 323 ESMNQFAQHLISKGIRATVRRSRGQDIMAACGQLKADTKGV 363


>gi|118475734|ref|YP_892923.1| radical SAM protein [Campylobacter fetus subsp. fetus 82-40]
 gi|261886280|ref|ZP_06010319.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
           fetus subsp. venerealis str. Azul-94]
 gi|205829691|sp|A0RRU0|RLMN_CAMFF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118414960|gb|ABK83380.1| radical SAM enzyme, Cfr family [Campylobacter fetus subsp. fetus
           82-40]
          Length = 354

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/353 (40%), Positives = 204/353 (57%), Gaps = 34/353 (9%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           + R  QI++W+Y +  R F  M++IS++VR  L   F +     V  + S DG+ K+L +
Sbjct: 19  KFRAKQIYEWVYKKNARSFDEMTNISKDVRENLKSEFYLDPLTCVRSETSKDGSIKYLFK 78

Query: 92  FPARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKL 138
                  G   IE+V +P K             +R T+CVSSQVGC + CSFC T     
Sbjct: 79  LT----DGKT-IESVLLPMKEEISSEDGSVERHARYTICVSSQVGCKMGCSFCLTAKGGF 133

Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198
           VRNL+A EI+ Q+L  +                IP   R   N+V MGMGEPL N  NV 
Sbjct: 134 VRNLSAGEIVAQILWIK------------RENNIPYERR--VNVVYMGMGEPLDNLTNVS 179

Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPI 257
           K++SI  D+ GL+   RR T+STSG    I ++GE ++GV+LAISLHAV+++LR  L+PI
Sbjct: 180 KAVSILKDNDGLAIGARRQTISTSGLASQIKKLGELDLGVLLAISLHAVTDELRAKLMPI 239

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
           N+ Y +  ++DA R +P +   +R+ FEY+++  +ND+  DA  L+K+L GI AK+NLI 
Sbjct: 240 NKAYNIAAVMDAVRAFP-IDMRKRVMFEYLIMDKVNDNLSDAKALVKLLHGIKAKVNLIL 298

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           FNP  G +Y     +++  F   ++  G +  IR  +GLDI AACGQLK  SK
Sbjct: 299 FNPHEGSQYQRPSIENVDNFRTYLQSRGVTCTIRQSKGLDISAACGQLKERSK 351


>gi|78358007|ref|YP_389456.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123727640|sp|Q30X35|RLMN_DESDG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78220412|gb|ABB39761.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 358

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 211/367 (57%), Gaps = 33/367 (8%)

Query: 9   LIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++ +  EELE  L+ K+G      + R  QIW+W++ + +RDF  M+++S++ R  L +H
Sbjct: 4   ILNLTFEELETFLVEKLG----EKKFRARQIWQWLWNKYVRDFDQMTNVSKQTRAQLKEH 59

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSL 126
             I +PE+V    S DGT K+LLR     +     +ETV IP  + R T C+S QVGC++
Sbjct: 60  ARIFWPEVVTTSKSQDGTTKFLLRLADGAL-----VETVLIPGSQGRITQCLSCQVGCAM 114

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK--ISNIVM 184
            C+FC TGT    RN+T  EIL QVL+AR  L D              V  +  + N+V 
Sbjct: 115 GCTFCATGTLGFERNMTMSEILGQVLVAREYLND--------------VAERPILRNLVF 160

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGEEIGVMLAISL 243
           MGMGEPL N D + +SL   +  +GL FS RRIT+ST G  P  + R+GE     LA+SL
Sbjct: 161 MGMGEPLLNLDEIMRSLHTLNSELGLQFSPRRITVSTCGVNPEGLRRLGESGLAYLAVSL 220

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + +LR  ++P   ++ L   I+A + YP L    RITFEY++L G+NDS   A  L+
Sbjct: 221 HAPTQELRRTIMPKAARWELNDFIEALQSYP-LKTRERITFEYLLLGGVNDSLEHAKQLV 279

Query: 304 KILKGIPAKINLIPFNPWPGCE---YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           +++    AK+NLI +NP  G E   Y    ++ I+ F + +     ++ IR  +G DI A
Sbjct: 280 RLVSRTKAKLNLIVYNP-SGDEADPYAAPTEERILAFEQYLWSKHVTAIIRKSKGADIKA 338

Query: 361 ACGQLKS 367
           ACGQLK+
Sbjct: 339 ACGQLKA 345


>gi|254479559|ref|ZP_05092874.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM
           12653]
 gi|214034497|gb|EEB75256.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM
           12653]
          Length = 336

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 144/357 (40%), Positives = 203/357 (56%), Gaps = 30/357 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  EE+EE  + +G      + R  Q++KWIY + + DF  M+DIS+ +R  L +   I 
Sbjct: 1   MTLEEMEEFFVNLG----ESKFRAKQLYKWIYDKRVTDFDLMTDISKNLRAKLKEIAYIS 56

Query: 72  YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
             +I++ ++S  D T K+L     + I     IE V I  K   T CVS+QVGC++ C F
Sbjct: 57  ELKIIERRVSQIDDTVKYLFLLEDKNI-----IEGVAIKYKFGNTACVSTQVGCNMKCKF 111

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +     VR+L A E++ QV                  M I S   KISNIV+MG GEP
Sbjct: 112 CASAIGGKVRDLKASEMVDQV------------------MAIDSDYGKISNIVLMGSGEP 153

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSND 249
             N+D V K + I ++  GL   KR IT+ST G VP I +   EE+ V L+ISLHA +N+
Sbjct: 154 FDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHAPNNE 213

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           LRN L+PINR YPLE L+ ACR+Y   +N RRITFEY ++ G+ND    A  L+ +LKG+
Sbjct: 214 LRNELMPINRAYPLEELMKACRYYIEKTN-RRITFEYALIDGVNDKKEHAYQLVDLLKGM 272

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
              +NLIP N      +  S+ + ++ F + I+ +G +  +R   G DI AACGQL+
Sbjct: 273 LCHVNLIPINYVKEIGFRKSNNEKVMMFKKIIENAGITCTVRRELGSDIEAACGQLR 329


>gi|242310237|ref|ZP_04809392.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523534|gb|EEQ63400.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 346

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 143/365 (39%), Positives = 208/365 (56%), Gaps = 28/365 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+++ G+  EEL ++L   G P    + R  QI+ W+YVR   +F  M ++ + +R  
Sbjct: 1   MDKKNIFGLTLEELTQSL--NGFP----KFRAKQIYHWLYVRYENNFDKMENLPKNLREF 54

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQV 122
           L Q F+     I  ++ S DG+ K+L R         +  E V++  K  + TLC+SSQ+
Sbjct: 55  LKQDFTGDLVSIAKKEQSSDGSVKYLFR-----TADNLTYEAVFLKMKEDKFTLCLSSQI 109

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + CSFC T     VRNL+A E++ QV   +            +   IPS   K  NI
Sbjct: 110 GCKVGCSFCLTAKGGFVRNLSAGEMVYQVFAIK------------KDQNIPS--NKAVNI 155

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N +NV K + I S+  GLS S+RR T+STSG  P I ++G   +GV LAI
Sbjct: 156 VYMGMGEPLDNLENVSKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALNLGVQLAI 215

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV ++LR  L+PIN+ Y ++ +ID    +P +   +R+ FEY+M+  +NDS   A  
Sbjct: 216 SLHAVDDELRTKLMPINKAYNIQSVIDEVAIFP-IDTRKRVMFEYLMIDEVNDSLECAKK 274

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+ +L  I AK+NLI FNP  G  Y   +++ +  F E + + G    IR  +GLDI AA
Sbjct: 275 LVALLNKIKAKVNLIYFNPHEGSPYKRPNKEKVEAFREFLLKKGLLCTIRESKGLDISAA 334

Query: 362 CGQLK 366
           CGQL+
Sbjct: 335 CGQLR 339


>gi|330975900|gb|EGH75966.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 261

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 124/268 (46%), Positives = 170/268 (63%), Gaps = 19/268 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY 273
            ++ LRN LVP+N+KYPL++L+++CR Y
Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRY 255


>gi|301632243|ref|XP_002945200.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
           [Xenopus (Silurana) tropicalis]
          Length = 328

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 139/320 (43%), Positives = 187/320 (58%), Gaps = 24/320 (7%)

Query: 53  MSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112
           MSD+++ +R  L     I    ++ E+ S DGT KWL       +GG   +ETV+IPE  
Sbjct: 1   MSDLAKSLREKLQDRACITGLPVLTEQASADGTVKWLFD-----VGGGNAVETVFIPEDD 55

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           RGTLCVSSQ GC++ C FC TG Q   RNL+  EIL Q+  A   L    G  +      
Sbjct: 56  RGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHHLRQRLGSSE------ 109

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
               R ISN+VMMGMGEPL N+  +  +L +  D  G   S+RR+T+STSG VP + R+ 
Sbjct: 110 ----RVISNVVMMGMGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMERLA 165

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLK 290
            +  V LA+SLHA ++ LR+ LV +NRKYPLE L+  C  Y  L +A R  ITFEY ML 
Sbjct: 166 LDCPVALAVSLHAPNDALRDHLVSLNRKYPLEELLQTCVRY--LDHAPRDFITFEYCMLD 223

Query: 291 GINDSPRDALNLIKILKG-----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
           G+ND P  A  LI++++G     +  K NLIPFNP+P    + S  + +  F+  +  +G
Sbjct: 224 GVNDQPEHAQQLIQLVRGHAQGKVWCKFNLIPFNPFPESGLVRSPPQRVSGFARLLSDAG 283

Query: 346 YSSPIRTPRGLDILAACGQL 365
             + +R  RG DI AACGQL
Sbjct: 284 IVTTVRKTRGDDIDAACGQL 303


>gi|212704175|ref|ZP_03312303.1| hypothetical protein DESPIG_02230 [Desulfovibrio piger ATCC 29098]
 gi|212672379|gb|EEB32862.1| hypothetical protein DESPIG_02230 [Desulfovibrio piger ATCC 29098]
          Length = 357

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 136/341 (39%), Positives = 195/341 (57%), Gaps = 22/341 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           + R  Q+W+WI+ +  RDF  M+++S+  R  L Q   I +PEIV  + S D T K+LLR
Sbjct: 24  KFRAVQVWQWIWQKMARDFDAMTNVSKACRERLAQCAEIRWPEIVTVEQSSDDTTKFLLR 83

Query: 92  FPARCIGGPVEIETVYIPEKSR-----GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
                +    E+ETV IP  SR      T C+SSQVGC++ C+FC TGT    RN+T  E
Sbjct: 84  -----LQDGAEVETVLIPSDSREGVRRWTQCLSSQVGCAMACTFCSTGTMGFERNMTMGE 138

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
           IL Q+L+AR  LGD      +           + N+V MGMGEPL N  NV ++L   ++
Sbjct: 139 ILGQILVAREHLGDTRPDWPV-----------LRNLVFMGMGEPLLNLKNVMRALESLNN 187

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
             GL+FS RRIT+ST G    +  +GE     LA+SLHA + +LR  ++P   ++PLE L
Sbjct: 188 DKGLNFSPRRITVSTCGIEKGLRELGESGLAYLAVSLHAPTQELRARIMPKAARWPLEDL 247

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           + A + YP L    RITFEY++L G+ND    A  L +++  +  K+NLI +NP  G  Y
Sbjct: 248 LQALKSYP-LKTRERITFEYLLLGGVNDGLEQARQLARVVSDVKGKLNLIVYNPSEGDPY 306

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
                + ++ F + +     ++ IR  +G DI AACGQLK+
Sbjct: 307 KAPSPERVLAFEQYLWDRNITAIIRKSKGQDIKAACGQLKA 347


>gi|75376338|sp|Q6XK03|RLMN_SPICI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|34396189|gb|AAP55653.1| unknown [Spiroplasma citri]
 gi|110005241|emb|CAK99567.1| conserved hypothetical upf0063 transmembrane protein [Spiroplasma
           citri]
          Length = 345

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 214/361 (59%), Gaps = 27/361 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S+ G  +EEL+  L+  G      +    QI+ WIYV+ I  F  M++IS+  R+ L ++
Sbjct: 3   SIFGYPKEELQLDLVAHGFK----KYLAEQIFDWIYVKNIYSFDEMTNISKTDRNKLQEY 58

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           ++I   +IV ++ S D T K+L +     +    +IETV +P+    ++CV++QVGC++ 
Sbjct: 59  YTIEPLKIVVQQQSKDWTVKFLFQ-----LADGYKIETVLMPQSYGNSVCVTTQVGCNMA 113

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +G  K  RNL+  EI+ QV++    L               +   ++S+IV+MG+
Sbjct: 114 CTFCASGLLKKTRNLSTAEIVQQVMMVNRYLA--------------TTNERVSHIVVMGI 159

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAV 246
           GEP  NFDN  K ++I +D  G     R IT+ST G VP I +  E +  V LAISLHA 
Sbjct: 160 GEPFDNFDNTLKFVNIINDPKGYQIGARHITISTCGLVPKIKQFAELKTQVNLAISLHAP 219

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N +RN L+PIN+ YP+E L+DA R+Y  L+N RR+TFEY++++ +NDS   AL L K++
Sbjct: 220 NNTIRNQLMPINKAYPVEKLMDAVRYYIELTN-RRVTFEYILIENVNDSRETALELAKLI 278

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +G+ A +NLIP+N      +  S +  I  F E +++   +  +R   G DI AACGQL+
Sbjct: 279 RGLNAYVNLIPYNTVAENGHQRSTK--INKFFETLQQQKINCIVRREFGHDIDAACGQLR 336

Query: 367 S 367
           +
Sbjct: 337 A 337


>gi|15605915|ref|NP_213292.1| hypothetical protein aq_416 [Aquifex aeolicus VF5]
 gi|81556300|sp|O66732|RLMN_AQUAE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|2983096|gb|AAC06702.1| hypothetical protein aq_416 [Aquifex aeolicus VF5]
          Length = 348

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 211/366 (57%), Gaps = 32/366 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL++   ++G+       R  Q+++W+Y + + DF+ M+D+ ++ R LL +HF+    E
Sbjct: 10  EELKKRFTELGLEP----YRAKQVFRWVYKKFVTDFEKMTDLGKKHRELLKEHFAFHPLE 65

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
            +D ++      K+L +     I     +ETV I E+   TLCVSSQ+GC++ C+FC T 
Sbjct: 66  KLD-RVEAPDAVKYLFKTKDGHI-----LETVLIKERDHYTLCVSSQIGCAVGCTFCATA 119

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNL+  EI+ Q L  +  LG+                 KI N+V MGMGEPL N+
Sbjct: 120 LDGLKRNLSTAEIIDQYLQVQQDLGE----------------EKIRNVVFMGMGEPLANY 163

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLAISLHAVSNDLR 251
           +NV+K++ I     GL  SKRRIT+STSG V  I R+ ++     V LA+SL+AVS   R
Sbjct: 164 ENVRKAVEIMVSPEGLDLSKRRITISTSGIVAQIKRMAQDPVMKEVNLAVSLNAVSQKKR 223

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGI 309
             L+P+ +   LE L++  ++YP L   RRIT EYV++KG+NDSP DA  L K++     
Sbjct: 224 EELMPLTKTNTLEELMEVLKNYP-LPKYRRITLEYVLIKGVNDSPNDAERLAKLIGRHKK 282

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
             K+NLIPFNP P   Y      DI+ F + + + G S+ +R  +G+++  ACGQL++  
Sbjct: 283 KFKVNLIPFNPDPNLPYERPALTDIMKFQKVLWKYGISNFVRFSKGVEVFGACGQLRTQR 342

Query: 370 KRIPKV 375
            ++ +V
Sbjct: 343 LQLQRV 348


>gi|218295831|ref|ZP_03496611.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23]
 gi|218243569|gb|EED10097.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23]
          Length = 349

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 137/333 (41%), Positives = 193/333 (57%), Gaps = 21/333 (6%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R +QI  W++ RG+ DF  M+D+ + +R  L + + +   ++V+   S DG+ K+L    
Sbjct: 18  RKAQIAHWVFARGVLDFAEMTDLPKGLREALAREWRVSEFQLVEAYPSKDGSVKYLFTL- 76

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              + G  + E VY+P K+R T+C+SS VGC   C+FC TG     RNLTA EIL Q+L 
Sbjct: 77  ---LDGK-KTEAVYMPYKNRKTVCLSSMVGCPAGCTFCATGALGFGRNLTAAEILSQLLA 132

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                G  P              R+I N+V+MGMGEPL N  NV K++ +      L+ S
Sbjct: 133 IAHHQGLSP--------------REIRNVVLMGMGEPLLNLTNVLKAIRVMLHPKALAMS 178

Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            RRITLST G    I R+ EE +GV LA+SLHA  ++ R  ++P   +YP+  ++ A R 
Sbjct: 179 PRRITLSTVGIPRGILRLAEEDVGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMAAVRR 238

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +  RR+TFEY +LKG+ND    A  L K+LKGI A +NLIPFNPW       + + 
Sbjct: 239 YYERTK-RRVTFEYTLLKGLNDHLWQARLLAKLLKGISAHVNLIPFNPWENAPVEGTPKA 297

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I+ F+E ++R G S+ IR  RG D+ AACGQL
Sbjct: 298 GILAFAEELRRLGVSTSIRWSRGRDVGAACGQL 330


>gi|168186788|ref|ZP_02621423.1| radical SAM enzyme, Cfr family [Clostridium botulinum C str.
           Eklund]
 gi|169295142|gb|EDS77275.1| radical SAM enzyme, Cfr family [Clostridium botulinum C str.
           Eklund]
          Length = 343

 Score =  242 bits (617), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 136/337 (40%), Positives = 197/337 (58%), Gaps = 25/337 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-KISCDGTRKWLL 90
           + R  QI++WIY + + +F  M++IS+  +  L ++F I  P ++ + K + DGT K+L 
Sbjct: 23  KFRAKQIFQWIYKKAVFNFDDMTNISKGTKEKLKENFCIQIPNVIKKYKSNIDGTEKFLF 82

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
            +    I     IE+V +  K   ++CVS+Q+GC + C FC +    +VRNLT+ EI+ Q
Sbjct: 83  EYEDGNI-----IESVVMKYKHGNSICVSTQIGCRMGCKFCASTVDGVVRNLTSGEIIAQ 137

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           VL A+  + D                 +ISN+V+MG GEPL N+DNV K L + +    L
Sbjct: 138 VLKAQKEIDD-----------------RISNVVLMGSGEPLDNYDNVLKFLKLINHDDTL 180

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
              +R ITLST G VP I  + +E + + LAISLHA +N++R  ++PI  KY L+ L++ 
Sbjct: 181 KIGQRHITLSTCGVVPKIKELADEKMQITLAISLHAPNNEIRKSMMPIASKYTLDELLET 240

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           CR+Y   +N RRITFEY ++KG+NDS  +A  LIK LKG+   INLIP N      Y  S
Sbjct: 241 CRYYYITTN-RRITFEYALVKGVNDSRENAEELIKKLKGMLCHINLIPVNEIKENNYERS 299

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             KDI  F E + + G  + IR   G DI  ACGQL+
Sbjct: 300 KSKDIEEFKETLIKYGIETTIRREMGSDINGACGQLR 336


>gi|38175091|dbj|BAD01056.1| hypothetical protein [Pseudomonas putida]
          Length = 284

 Score =  242 bits (617), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 127/268 (47%), Positives = 166/268 (61%), Gaps = 19/268 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLE 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V E IS DGTRKW++R  +        +ETVYIP   RGTLCVSSQ GC+
Sbjct: 63  AVAEIRPPEVVSEDISADGTRKWVIRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV LA    G  P            V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPA----------KVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY 273
            +++LRN LVPIN+KYPL+ML+++C  Y
Sbjct: 228 PNDELRNKLVPINKKYPLKMLLESCMGY 255


>gi|303272039|ref|XP_003055381.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463355|gb|EEH60633.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 430

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 152/374 (40%), Positives = 213/374 (56%), Gaps = 32/374 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVR 61
           L K SL GM   +LE  L +IG        R +Q++ W+Y  G  + D + M+D+S   R
Sbjct: 51  LAKVSLKGMRYADLERWLAEIG----EKPSRATQVFNWMYRPGKLVADVRDMADVSAAFR 106

Query: 62  HLLNQHFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK---SRGTLC 117
             L    ++    E+ D + S DGT+K      A   GG V +E+V IP      R T+C
Sbjct: 107 EKLASLATVDGDLEMRDVRTSADGTKKVTY---ALANGGGV-VESVIIPSNVPGGRTTVC 162

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQ+GC++ C FC+T    L RNLTA +I+ QV+ AR L        D E         
Sbjct: 163 VSSQLGCAMNCQFCFTAKMGLRRNLTAAQIVEQVVHARRL-----AEADDEAS------- 210

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
             SN+V MGMGEPL N D V  ++ +  D  GL FSK ++T+STSG VP I R   E   
Sbjct: 211 --SNVVFMGMGEPLHNIDAVLAAVDVLLDDRGLGFSKNKVTVSTSGLVPEIERYLAESQG 268

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYP---GLSNARRITFEYVMLKGIN 293
            LA+SL+A ++++R+ ++PINRKY LE L+ A R ++P   G  + R + FEY+ML+G+N
Sbjct: 269 SLAVSLNATTDEIRSWIMPINRKYNLERLLGALRANFPRRDGGRHQREVFFEYIMLEGVN 328

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           DS  DA  L+ I + +P K NLI FN   G E+ CSD++ I+ F + +  +G +  IR  
Sbjct: 329 DSAEDADRLVAIARTLPCKFNLIYFNTHDGSEFRCSDRETILAFRDRVVAAGVTCTIRQS 388

Query: 354 RGLDILAACGQLKS 367
           RG +  AACGQL S
Sbjct: 389 RGDEEAAACGQLGS 402


>gi|157164532|ref|YP_001467818.1| radical SAM protein [Campylobacter concisus 13826]
 gi|205829689|sp|A7ZGB0|RLMN_CAMC1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|112801745|gb|EAT99089.1| radical SAM enzyme, Cfr family [Campylobacter concisus 13826]
          Length = 381

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 141/348 (40%), Positives = 210/348 (60%), Gaps = 34/348 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y +   +F  M ++ +++R  L + F +   + V  + S DG+ K+L   
Sbjct: 20  FRATQIYEWVYKKNATEFSQMLNLPKDMRQDLAEKFYLDPLKCVKFEQSSDGSIKYLFE- 78

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               +   ++IE+V +P K             +R T+CVSSQVGC + C+FC T    LV
Sbjct: 79  ----LKDGLKIESVLLPMKEEISDEDGKISRHARYTICVSSQVGCKMGCAFCLTAKGGLV 134

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNLTA EI+ Q+L  +                IP   R+I N+V MGMGEPL N  NV K
Sbjct: 135 RNLTAGEIVGQILWIK------------RENKIP-YERRI-NVVYMGMGEPLDNLTNVSK 180

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I + + GL+ S RR T+STSG    I ++GE ++GV+LAISLHAV+N+LR+ L+PIN
Sbjct: 181 AIKILALNEGLAISPRRQTVSTSGLGSQIKKLGEMDLGVLLAISLHAVTNELRSRLMPIN 240

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y +E ++DA R +P +   +R+ FEY+++K +NDS  DA  L+K+L GI AK+NLI F
Sbjct: 241 KAYNIEAVMDAVRGFP-IDMRKRVMFEYLVIKDLNDSVSDAKKLVKLLHGIKAKVNLIYF 299

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           NP  G E+   +   ++ F E ++  G +  IR  +GLDI AACGQLK
Sbjct: 300 NPHEGSEFGRPELASMLKFQEYLRDHGVTCTIRQSKGLDISAACGQLK 347


>gi|253828191|ref|ZP_04871076.1| Fe-S cluster redox enzyme [Helicobacter canadensis MIT 98-5491]
 gi|253511597|gb|EES90256.1| Fe-S cluster redox enzyme [Helicobacter canadensis MIT 98-5491]
          Length = 346

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 206/365 (56%), Gaps = 28/365 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+++ G     L ++L      +   + R  QI+ W+YV    DF+ M ++ + +R  
Sbjct: 1   MDKQNVFGFTLNSLSDSL------KDFPKFRAKQIYHWLYVHYENDFEKMENLPKNLREF 54

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQV 122
           L ++F     EI  ++ S DG+ K+L +         +  E V++  K  + TLC+SSQV
Sbjct: 55  LKENFISNAVEIAKKEQSSDGSVKYLFK-----TADNLTYEAVFLKMKEDKFTLCLSSQV 109

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + CSFC T     VRNL A E++ QV   +            +   IPS   K  NI
Sbjct: 110 GCKVGCSFCLTAKGGFVRNLNAGEMVYQVFAIK------------KDQNIPS--NKAVNI 155

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N +NV K + I S+  GLS S+RR T+STSG  P I ++G  ++GV LAI
Sbjct: 156 VYMGMGEPLDNLENVTKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALDLGVQLAI 215

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV ++LR  L+PIN+ Y ++ +ID    +P + + +R+ FEY+M+ GINDS   A  
Sbjct: 216 SLHAVDDELRTKLMPINKAYNIQNIIDEVVAFP-IDSRKRVMFEYLMIDGINDSLECAKK 274

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+ +L  I AK+NLI FNP  G  Y    ++ +  F E + + G    IR  +GLDI AA
Sbjct: 275 LVALLNKIKAKVNLIYFNPHEGSLYKRPSKEKVEAFREYLLKKGLLCTIRESKGLDISAA 334

Query: 362 CGQLK 366
           CGQL+
Sbjct: 335 CGQLR 339


>gi|322373635|ref|ZP_08048171.1| radical SAM enzyme, Cfr family [Streptococcus sp. C150]
 gi|321278677|gb|EFX55746.1| radical SAM enzyme, Cfr family [Streptococcus sp. C150]
          Length = 389

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 216/368 (58%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ REEL +  ++ G      + R +QIW W+Y + ++ F+ M++IS++    LN
Sbjct: 25  KPSIYGLTREELIDWAMEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 81  ENFCVNPLKQRIVQE--SKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 133

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++L +    D               G ++S++V
Sbjct: 134 CNIGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVV 181

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV + L   ++  GL+   R IT+STSG  P I     E + V LA+S
Sbjct: 182 VMGIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ INR +PLE L +A  +Y   +N RR+TFEY+ML  +ND P +A  L
Sbjct: 242 LHAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTN-RRVTFEYIMLNEVNDHPENAQEL 300

Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + INLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 301 ADLTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDID 360

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 361 AACGQLRS 368


>gi|149924885|ref|ZP_01913219.1| hypothetical protein PPSIR1_09370 [Plesiocystis pacifica SIR-1]
 gi|149814238|gb|EDM73847.1| hypothetical protein PPSIR1_09370 [Plesiocystis pacifica SIR-1]
          Length = 382

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 156/367 (42%), Positives = 214/367 (58%), Gaps = 25/367 (6%)

Query: 6   KESLIGMMREELEEAL-LKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           K +L GM REEL E L  ++  P      R  Q++ WI+ R   DF  M+++S+  R  L
Sbjct: 22  KPNLRGMSREELGEFLGRELSAPA----YRVDQVFGWIHQRRAPDFDAMTNLSKADRAKL 77

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVG 123
            +  S+   E+   + + DGTRK  LR           IE+V IP   RG T C+SSQVG
Sbjct: 78  RERASLDTLEVDTIQRARDGTRKLRLR-----TADGEAIESVLIPNDERGLTQCISSQVG 132

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C FC T +    RNL   EI+ QV  AR+LL +    E       P    +I+NIV
Sbjct: 133 CALDCRFCATASLGFRRNLDTWEIVDQVARARTLLAE--EAEREGARWTP----RITNIV 186

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-----VGEEIGVM 238
            MGMGEPL NF+ V++SLSI +D+ G + + RRIT+STSG VP I R     +GEE+G  
Sbjct: 187 YMGMGEPLHNFNQVRRSLSILTDAGGEAIAGRRITVSTSGLVPAIERFAREGLGEEVG-- 244

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISL+A ++ +R+ ++PINRK+ ++ L+ A       S  RR+TFEYV+L G+NDS  D
Sbjct: 245 LAISLNATTDAVRDEVMPINRKWKIDELL-AAVRRVPTSRRRRVTFEYVLLGGVNDSDAD 303

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  LI++++     +N+IPFNP     Y    Q  +  F   ++RSG    +RTPRG DI
Sbjct: 304 AHRLIELVREFRCHVNVIPFNPHEHAPYRRPSQSRVRAFMAILRRSGVDVWLRTPRGDDI 363

Query: 359 LAACGQL 365
            AACGQL
Sbjct: 364 QAACGQL 370


>gi|55821670|ref|YP_140112.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           thermophilus LMG 18311]
 gi|81560179|sp|Q5M2V3|RLMN_STRT2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|55737655|gb|AAV61297.1| conserved hypothetical protein [Streptococcus thermophilus LMG
           18311]
 gi|312279010|gb|ADQ63667.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
           thermophilus ND03]
          Length = 389

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 213/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL    +   +     + R +QIW W+Y + ++ F+ M++IS++    LN
Sbjct: 25  KPSIYGLTRDEL----IDWAVEHGEKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 81  DNFCVNPLKQRIVQE--SKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 133

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++L +    D               G ++S++V
Sbjct: 134 CNIGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVV 181

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV + L   ++  GL+   R IT+STSG  P I     E + V LA+S
Sbjct: 182 VMGIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ INR +PLE L +A  +Y   +N RR+TFEY+ML  +ND P +A  L
Sbjct: 242 LHAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTN-RRVTFEYIMLNEVNDHPENAQEL 300

Query: 303 IKILKGIP--AKINLIPFNPWPGCEYLCSDQKD-IVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + INLIP+NP    ++     K+ + TF + +K++G +  +R   G DI 
Sbjct: 301 ADLTKKIRKLSYINLIPYNPVSEHDHYSRSTKERVATFYDVLKKNGVNCVVRQEHGTDID 360

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 361 AACGQLRS 368


>gi|312863236|ref|ZP_07723474.1| 23S rRNA m2A2503 methyltransferase [Streptococcus vestibularis
           F0396]
 gi|322516113|ref|ZP_08069048.1| cfr family radical SAM enzyme [Streptococcus vestibularis ATCC
           49124]
 gi|311100772|gb|EFQ58977.1| 23S rRNA m2A2503 methyltransferase [Streptococcus vestibularis
           F0396]
 gi|322125408|gb|EFX96758.1| cfr family radical SAM enzyme [Streptococcus vestibularis ATCC
           49124]
          Length = 389

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 216/368 (58%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL +  ++ G      + R +QIW W+Y + ++ F+ M++IS++    LN
Sbjct: 25  KHSIYGLTRDELIDWAMEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 81  ENFCVNPLKQRIVQE--SKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 133

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++L +    D               G ++S++V
Sbjct: 134 CNIGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVV 181

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV + L   ++  GL+   R IT+STSG  P I     E + V LA+S
Sbjct: 182 VMGIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ INR +PLE L +A  +Y   +N RR+TFEY+ML  +ND P +A  L
Sbjct: 242 LHAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTN-RRVTFEYIMLNEVNDHPENAQEL 300

Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + INLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 301 ADLTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDID 360

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 361 AACGQLRS 368


>gi|116515112|ref|YP_802741.1| YfgB [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285492|sp|Q057Q1|RLMN_BUCCC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|116256966|gb|ABJ90648.1| putative pyruvate formate lyase activating enzyme [Buchnera
           aphidicola str. Cc (Cinara cedri)]
          Length = 359

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 209/370 (56%), Gaps = 34/370 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+    +++    +KIG      + R  QI  WIY +    F  MS+++  ++  L
Sbjct: 13  KKINLLNFNLKKMINFFIKIG----EKKFRAIQITDWIYKKQNIKFDQMSNLNFFLKKKL 68

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N    I  P+ + +  S DGT KW      + +     IET+YIPEK R TLC+SSQVGC
Sbjct: 69  NNIAVIKIPKCIKKIKSIDGTIKW------KFLCNKEFIETIYIPEKKRATLCISSQVGC 122

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLA-------RSLLGDFPGCEDIEGMVIPSVGR 177
            L C+FC TG     RNL   EI+ Q+           S   +FP               
Sbjct: 123 QLKCNFCATGQLGYKRNLLVSEIIGQIWYVINKIKKYNSKKKNFPP-------------- 168

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            I NIVMMGMGEPL N  N+  ++ I   + G +FSK ++TLSTSG VP I ++  +I +
Sbjct: 169 -IKNIVMMGMGEPLLNLKNIIIAIDIILGNYGFNFSKNKVTLSTSGIVPAINKIAGKIDI 227

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDS 295
            LA+SLHA +N +RN ++PIN+ Y +++L+++ ++Y   S+A +  +T EYVML  IND 
Sbjct: 228 SLAVSLHASNNTIRNKIMPINKIYNIQLLLESIKNYLKKSSANKGIVTIEYVMLSKINDF 287

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
              A+ L  +LK IP KINLIP+NP     Y+CS  K+I+ F+  +++ G+   IR  RG
Sbjct: 288 QHHAIELSNLLKNIPCKINLIPWNPIKNSSYICSSSKNIINFANFLRKKGFIVIIRKNRG 347

Query: 356 LDILAACGQL 365
            DI AACGQL
Sbjct: 348 SDIQAACGQL 357


>gi|297564808|ref|YP_003683780.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946]
 gi|296849257|gb|ADH62272.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946]
          Length = 344

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 129/333 (38%), Positives = 188/333 (56%), Gaps = 21/333 (6%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  QI  W+Y RG+R++  M+D+ + +R  L + + +     V   +S DG  K+L    
Sbjct: 26  RKEQIAHWLYARGVREWSEMTDLPKGLRQELAEKYRVSEFAHVAPFVSQDGAVKYLY--- 82

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              +    + E VY+P   R T+C+SS VGC   C+FC TG     RNLTA EIL Q+L 
Sbjct: 83  --TLWDGQKTEAVYMPYAGRKTICISSMVGCPAGCTFCATGKMGFGRNLTAAEILDQILF 140

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
           A    G  P              R+I N+V+MGMGEPL N ++V +++    D  GL+ S
Sbjct: 141 AAHHQGHSP--------------REIRNVVLMGMGEPLLNLNHVLEAIRRMLDPQGLAMS 186

Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            RRITLST G    I R+ +E +GV LA+SLHA  +  R  ++P   +Y +  +++A RH
Sbjct: 187 PRRITLSTVGIPRGIYRLAQEDLGVRLALSLHAPDDQTRQKIIPTAHRYSIAEIMEAVRH 246

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +  RR+T EY +LKG+ND P  A  L  +L G+ A +NLIP+NPW G  +  + ++
Sbjct: 247 YYAQTK-RRVTLEYTLLKGLNDHPWQARALAGLLAGLSAHVNLIPWNPWEGAPHQGTGKE 305

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I+ F+  ++R G    +R  RG D+ AACGQL
Sbjct: 306 KILAFAAALERMGIPVSVRWSRGRDVGAACGQL 338


>gi|206900837|ref|YP_002251150.1| radical SAM enzyme, Cfr family [Dictyoglomus thermophilum H-6-12]
 gi|254807170|sp|B5YF42|RLMN_DICT6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|206739940|gb|ACI18998.1| radical SAM enzyme, Cfr family [Dictyoglomus thermophilum H-6-12]
          Length = 348

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 137/337 (40%), Positives = 201/337 (59%), Gaps = 24/337 (7%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRF 92
           R  QI+ W+Y + I +   M+++ + +R  + ++FS   P++V  KI+ +G T+K+LL  
Sbjct: 25  RADQIFDWVYKKLILNPSSMTNLPKGLRQKIAEYFSFDIPKVV--KITGEGNTKKYLLEL 82

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                     IETV I  K+R T+CVS QVGC++ C FC TG   L RNL   EI+ Q++
Sbjct: 83  E-----DGENIETVLISHKNRNTVCVSVQVGCAIGCKFCATGLVGLRRNLNTHEIVGQII 137

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           L +  L +               G +ISN+V MGMGEPL N+DNV KS+ I +   GL+ 
Sbjct: 138 LIQKELFE--------------KGDRISNVVYMGMGEPLLNYDNVVKSIRIINREWGLNI 183

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             + ITLST G VP I ++GEE + V LAISLHA +N+LR+ ++PIN++YP+E L+++  
Sbjct: 184 GSKHITLSTIGIVPKIYQLGEEDLKVRLAISLHAPNNELRSKIIPINKEYPIEKLLESAF 243

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RR+TFEYV++K  ND    A+ L  +LK  P  +NLIP+N  P   +  SD 
Sbjct: 244 YYAE-KTGRRVTFEYVLIKNFNDREEHAIELAGLLKNKPVHVNLIPWNKVPEYPWETSDL 302

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           KDI  F + +  +G +  +R   G  I A CGQL++L
Sbjct: 303 KDIFKFKKILSDAGINVTLRISYGSRIKAGCGQLRAL 339


>gi|323705502|ref|ZP_08117077.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535404|gb|EGB25180.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 343

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 209/369 (56%), Gaps = 33/369 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L  M  +ELE+  L IG      + R  Q+++WIY RGI +F  M+DI +++R  L   
Sbjct: 3   DLKNMTIDELEKFFLDIG----ETKYRAKQVFRWIY-RGITNFDDMTDIKKDLRQKLKNM 57

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   +I  + +S  DGT K+L       I     +E V I      T C+S+QVGC++
Sbjct: 58  AFISNLQIAKKVVSSEDGTAKYLFLLDDENI-----VEGVAIKYSFGNTSCISTQVGCNM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +G    VRNL A E++ +VL+     G                  KISNIV+MG
Sbjct: 113 RCSFCASGIGGKVRNLKASEMVDEVLIMNKDYG------------------KISNIVLMG 154

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+D V K + I ++  G+    R IT+ST G VP I +  +E +GV L+ISLHA
Sbjct: 155 SGEPFDNYDEVMKFIKIVNNPFGMGIGVRHITISTCGIVPKIYKFADEGLGVNLSISLHA 214

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++DLR+ L+PIN+ YP++ LIDACR+Y   ++ RRITFEY ++K +NDS   +L L  +
Sbjct: 215 PTDDLRSQLMPINKVYPIKDLIDACRYYIDKTH-RRITFEYSLIKSVNDSYDMSLKLSNL 273

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N      Y  +D + I+ F   ++RSG +  +R   G DI AACGQL
Sbjct: 274 LKGLLCHVNLIPVNYVSEIGYEKADNEKIMAFKNVLERSGITCTVRRELGSDIDAACGQL 333

Query: 366 --KSLSKRI 372
             K L+ R+
Sbjct: 334 RRKYLAGRV 342


>gi|313672236|ref|YP_004050347.1| 23S rRNA m(2)a-2503 methyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938992|gb|ADR18184.1| 23S rRNA m(2)A-2503 methyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 350

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 129/356 (36%), Positives = 213/356 (59%), Gaps = 26/356 (7%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M+ EEL++ +    + Q     R  Q++KWI+ +G++DF  M+D+S E+R  L  + S  
Sbjct: 7   MLLEELKDFM----VEQGEKSFRGEQVYKWIFQKGVKDFSQMTDLSVELRGKLQNNASFT 62

Query: 72  YPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
           Y + ++ ++   DG++K+L     +      +IE+V + ++ R TLCVS+QVGC + C+F
Sbjct: 63  YLKPIEIKRDEYDGSQKFLFELEDKN-----KIESVALKDQDRITLCVSTQVGCRMGCAF 117

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C T     +R+LTA EI+ Q++     L               +   K++NIV MGMGEP
Sbjct: 118 CATAKIGFIRDLTAGEIVRQIMEVNEHL--------------ATNSEKVTNIVFMGMGEP 163

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSND 249
           L N+ NV K++ I +D MGL +S R++T+STSG V  I  + + +  V LA+SL+A ++D
Sbjct: 164 LDNYHNVVKAIGIITDEMGLGYSHRKVTVSTSGVVDRIDELFKLKKQVNLAVSLNATTDD 223

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           +R+ ++PIN+K+ +E L+   +  P +   +RIT EYVM+KG+ND+  DA  L+++L G+
Sbjct: 224 IRSAIMPINKKFNIEKLMKKLKSLP-IQKRKRITIEYVMIKGVNDTLDDAKRLVRLLNGL 282

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           P KINLI +N      Y   D++ +++F + +     ++ IR   G +I  ACGQL
Sbjct: 283 PIKINLIAYNDGGNENYRAPDEQTVLSFQKYLVDKHITAFIRKSLGKNIEGACGQL 338


>gi|154175427|ref|YP_001407355.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
           curvus 525.92]
 gi|205829690|sp|A7GVW3|RLMN_CAMC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|112802451|gb|EAT99795.1| radical SAM enzyme, Cfr family [Campylobacter curvus 525.92]
          Length = 371

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 141/355 (39%), Positives = 207/355 (58%), Gaps = 34/355 (9%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           + R  QI++WIY +   +F  M ++ +++R  L Q F       V  + S DG+ K+L  
Sbjct: 19  KFRAKQIYEWIYKKNAENFDEMLNLPKDMRTNLAQEFYFDPLYCVKFEESSDGSIKYLF- 77

Query: 92  FPARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKL 138
                +     IE+V +P K             +R T+CVSSQVGC + C FC T    L
Sbjct: 78  ----ALKDGNTIESVLLPMKEVEVDEGGNISRHARYTICVSSQVGCKMGCLFCLTAKGGL 133

Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198
            RNL+  EI+ Q+L  +            +   IP   R   N+V MGMGEPL N  NV 
Sbjct: 134 KRNLSPGEIVGQILWIK------------KTNHIPYERR--VNVVYMGMGEPLDNLANVA 179

Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPI 257
           K++ I  +  GL+ S RR T+STSG    I ++GE ++GV+LAISLHAV+N+LR+ L+P+
Sbjct: 180 KAIQILKEPDGLAISPRRQTVSTSGLGAQIKKLGEMDLGVLLAISLHAVTNELRSKLMPV 239

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
           N+ Y +E ++DA R +P +   +R+ FEY++++G+NDS +DA  L+K+L GI AK+NLI 
Sbjct: 240 NKAYNIEAVMDAVRGFP-IDMRKRVMFEYLVIRGMNDSVKDAKTLVKLLHGIKAKVNLIY 298

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
           FNP  G EY   +  D++ F E ++  G +  IR  +GLDI AACGQLK  S+ +
Sbjct: 299 FNPHEGSEYGRPELADMLEFQEYLRAHGVTCTIRQSKGLDISAACGQLKQRSQNL 353


>gi|194700820|gb|ACF84494.1| unknown [Zea mays]
          Length = 409

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 139/363 (38%), Positives = 202/363 (55%), Gaps = 26/363 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHL 63
           K  L GM   ELE  +   G       M    +WK +Y   +    +  ++ ++++ R +
Sbjct: 49  KAMLKGMDYSELENWVQAQGFRPGQAMM----LWKCLYGNNVWAHCYDELAGLNKDFRKM 104

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122
           + +H  +    + D  I+ DGTRK L       +     IETV IP  + R T+CVSSQV
Sbjct: 105 ITEHADLKALTMKDIHIASDGTRKILFSLEDGSV-----IETVIIPCARGRTTICVSSQV 159

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C FC+TG   L ++L+  EI+ Q + AR L  D  G               I+N+
Sbjct: 160 GCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDELG--------------SINNV 205

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEP  N DNV K+ +I  D  GL FS R++T+STSG VP + R  +E    LA+S
Sbjct: 206 VFMGMGEPFHNIDNVIKASAIMVDEQGLHFSPRKVTVSTSGLVPQLKRFLQESNCSLAVS 265

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+A ++++RN ++PINRKY L +L+   R    L   + + FEYVML G+NDS  DA  L
Sbjct: 266 LNATTDEVRNWIMPINRKYNLNLLLGTLREELNLRQKQIVLFEYVMLSGVNDSMDDAKRL 325

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           I++++GIP KINLI FNP  G ++  +    I+ F   + + G +  +R  RG D +AAC
Sbjct: 326 IELVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLTVFVRLSRGDDQMAAC 385

Query: 363 GQL 365
           GQL
Sbjct: 386 GQL 388


>gi|310778596|ref|YP_003966929.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM
           2926]
 gi|309747919|gb|ADO82581.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM
           2926]
          Length = 349

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 142/360 (39%), Positives = 205/360 (56%), Gaps = 26/360 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +ELE+ ++ IG+     +    QI+ W++ + IR+   M++IS++ R LL     I +  
Sbjct: 13  KELEDFIVSIGMK----KFNGKQIFDWLHGKIIRNIDDMTNISKKNRELLQSKSYIPFLN 68

Query: 75  IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           +V  K S  D T K++ +      G    IETV +  K R TLC+SSQVGC + CSFC T
Sbjct: 69  VVKHKTSKIDYTEKFVFKLED---GNT--IETVLLKHKERNTLCISSQVGCPVKCSFCAT 123

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G    VRNL   EIL QV               ++     S G+ I+N+V MGMGEP+ N
Sbjct: 124 GLDGFVRNLNVHEILNQVYT-------------VQRRFFKSEGKNITNVVFMGMGEPMLN 170

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRN 252
            +NV K++ I SD  G++ SKRRIT+STSG +P I + + E+I V LAISLHA++N+ R+
Sbjct: 171 IENVIKAVDILSDENGMNISKRRITISTSGIIPGIEKLLQEKIPVELAISLHAITNEKRD 230

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            L+PINRKYPLE L      Y  ++  RRITFEYV++  +N +  DA  L + +      
Sbjct: 231 ALIPINRKYPLEDLYTILNEYQKIT-KRRITFEYVLIDKLNVTQSDADRLAEFMHSFDHV 289

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTF-SECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           +NLIP+NP PG +Y     + I  F +  +     +  +R  +G DI  ACGQL+   K+
Sbjct: 290 LNLIPYNPVPGNDYERPAPEKIKKFYNYLLNERKVNVTLRHEKGSDIDGACGQLRQSIKK 349


>gi|228477270|ref|ZP_04061908.1| radical SAM enzyme, Cfr family [Streptococcus salivarius SK126]
 gi|228251289|gb|EEK10460.1| radical SAM enzyme, Cfr family [Streptococcus salivarius SK126]
          Length = 389

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 216/368 (58%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL +  ++ G      + R +QIW W+Y + ++ F+ M++IS++    LN
Sbjct: 25  KPSIYGLTRDELIDWAMEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 81  ENFCVNPLKQRIVQE--SKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 133

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++L +    D               G ++S++V
Sbjct: 134 CNIGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVV 181

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV + L   ++  GL+   R IT+STSG  P I     E + V LA+S
Sbjct: 182 VMGIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ INR +PLE L +A  +Y   +N RR+TFEY+ML  +ND P +A  L
Sbjct: 242 LHAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTN-RRVTFEYIMLNEVNDHPENAQEL 300

Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + INLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 301 ADLTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDID 360

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 361 AACGQLRS 368


>gi|289522515|ref|ZP_06439369.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504351|gb|EFD25515.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 343

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 138/339 (40%), Positives = 195/339 (57%), Gaps = 24/339 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R  QI +WIY + I DFQ M+++S+E+R  L     +  P +  E+ S DGT+K+L +
Sbjct: 27  RYRADQICQWIYQKKIFDFQEMTNLSKELRGKLADAVMVAPPILTREETSKDGTKKYLWQ 86

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
           F          +E+V + ++ R T C+S+QVGC L C+FC +G    VR+L+  EI+ Q 
Sbjct: 87  FH-----DGERVESVLLSQEGRLTACLSTQVGCPLACTFCASGEGGFVRDLSGGEIVGQF 141

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L    L                  GR I N+V MGMGEP  N ++V KS+ I ++     
Sbjct: 142 LAMEKL-----------------AGRDIDNVVYMGMGEPFLNQESVFKSIKILNEPKMRG 184

Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
              RRIT+ST+G VP I  + E ++ V L++SLHA ++ LR+ L+PIN+KYPL  L++A 
Sbjct: 185 LGIRRITISTAGIVPGILALAEAQMPVKLSVSLHAPNDRLRSKLMPINKKYPLASLLEAL 244

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R Y   +N R +TFEY+ML+G+ND P  A  L  +LKG+   INLIP+N   G +Y  S 
Sbjct: 245 RRYQSATNDR-VTFEYLMLEGVNDLPEYAYELAALLKGLSFYINLIPYNQVEGSKYKRSS 303

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
              I  FS  + +      IR  RG DI AACGQLK +S
Sbjct: 304 AGRIKAFSNILSQLNIEHEIRRERGSDINAACGQLKRIS 342


>gi|116626240|ref|YP_828396.1| radical SAM protein [Candidatus Solibacter usitatus Ellin6076]
 gi|123024386|sp|Q01QF9|RLMN_SOLUE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|116229402|gb|ABJ88111.1| radical SAM enzyme, Cfr family [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 356

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 147/361 (40%), Positives = 204/361 (56%), Gaps = 26/361 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L+GM   +L EAL   G  Q   R +  QI++ IY     +   +S +  ++R  L  
Sbjct: 17  QPLVGMDLTDLREAL---GSDQPGYRAK--QIYEAIYRGQAANLVQISTLPAQLREDLAA 71

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +  PEI     S DGTR++LL+           +ETV +P+  R T+C+SSQVGC +
Sbjct: 72  RHEVGLPEIAHLYQSTDGTRRYLLKLE-----DGRTVETVLMPDGERDTICISSQVGCPV 126

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC T    L R+LTA EI+ QVLL              E  +    GR   NIVMMG
Sbjct: 127 DCKFCMTALMGLERSLTAGEIVGQVLLVAR-----------ENQLRQDGGR--LNIVMMG 173

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N +NV K+  I  D  G   S RR+T+ST+G +P IA +G E +   LAISL+A
Sbjct: 174 QGEPLLNLENVVKATRILLDPAGFGLSPRRVTVSTAGIIPKIAELGREPVRPKLAISLNA 233

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + + R  L+PI RKY L+ L+ AC+ YP L    ++TFEYV+L+G+ND+  DA  ++K+
Sbjct: 234 STEESRQELMPITRKYHLKDLLAACKAYP-LRPWEKLTFEYVLLRGVNDTDADARRVVKL 292

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L  + AK+NLI  NP PG  Y   D + + +F   ++R+     +R PRGLDI AACGQL
Sbjct: 293 LSNLNAKVNLIALNPGPGIPYATPDPERVASFQNIVRRA-LPCFVRKPRGLDIYAACGQL 351

Query: 366 K 366
           K
Sbjct: 352 K 352


>gi|255568836|ref|XP_002525389.1| catalytic, putative [Ricinus communis]
 gi|223535352|gb|EEF37027.1| catalytic, putative [Ricinus communis]
          Length = 861

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 201/361 (55%), Gaps = 27/361 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG---IRDFQGMSDISQEVRHLLN 65
           L GM   ELE+ +   G       M    +WK +Y         F  +  ++++ + +L+
Sbjct: 80  LKGMSYTELEKWVQSHGFRPGQAMM----LWKRLYANNNTLAHYFDELEGLNKDFKKMLS 135

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGC 124
           +H  +    + D   + DGT+K L R     +     IETV IP ++ R T+CVSSQVGC
Sbjct: 136 EHARLKAISMEDVVTASDGTKKILFRLDDEMV-----IETVIIPCDRGRTTVCVSSQVGC 190

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FCYTG   L R+LT  EI+ QV+ A+ LL    G               I+N+V 
Sbjct: 191 AMNCQFCYTGRMGLKRHLTTAEIVDQVVSAQRLLTSDAGS--------------ITNVVF 236

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV K+  I     GL FS R++T+STSG VP + R   E    LA+SL+
Sbjct: 237 MGMGEPLQNIENVIKAADIMVHDQGLHFSPRKVTISTSGLVPQLKRFLRESNCALAVSLN 296

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++++RN ++PINRKY L +L+D  R      N  ++ FEYVML G+NDS  DA  L  
Sbjct: 297 ATTDEVRNWIMPINRKYNLGLLLDTLRKELHFKNNYKVLFEYVMLAGVNDSLEDAERLSD 356

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +++GIP KINLI FNP  G ++  + ++ ++ F   +  +  +  +R  RG D +AACGQ
Sbjct: 357 LVQGIPCKINLIQFNPHSGSQFRPTSKEKMIEFRNILAEAKCTVFLRDSRGDDQMAACGQ 416

Query: 365 L 365
           L
Sbjct: 417 L 417


>gi|55823590|ref|YP_142031.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           thermophilus CNRZ1066]
 gi|116628382|ref|YP_821001.1| hypothetical protein STER_1660 [Streptococcus thermophilus LMD-9]
 gi|81558991|sp|Q5LY98|RLMN_STRT1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|122267023|sp|Q03J17|RLMN_STRTD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|55739575|gb|AAV63216.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
 gi|116101659|gb|ABJ66805.1| Predicted Fe-S-cluster redox enzyme [Streptococcus thermophilus
           LMD-9]
          Length = 389

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 212/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL    +   +     + R +QIW W+Y + ++ F+ M++IS++    LN
Sbjct: 25  KPSIYGLTRDEL----IDWAVEHGEKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 81  DNFCVNPLKQRIVQE--SKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 133

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++L +    D               G ++S++V
Sbjct: 134 CNIGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVV 181

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV + L   ++  GL+   R IT+STSG  P I     E + V LA+S
Sbjct: 182 VMGIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ INR +PLE L +A  +Y   +N RR+TFEY+ML  +ND P +A  L
Sbjct: 242 LHAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTN-RRVTFEYIMLNEVNDHPENAQEL 300

Query: 303 IKILKGIP--AKINLIPFNPWPGCEYLCSDQKD-IVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + INLIP+NP    ++     K+ +  F + +K++G +  +R   G DI 
Sbjct: 301 ADLTKKIRKLSYINLIPYNPVSEHDHYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDID 360

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 361 AACGQLRS 368


>gi|237753454|ref|ZP_04583934.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375721|gb|EEO25812.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 354

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 133/337 (39%), Positives = 196/337 (58%), Gaps = 22/337 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           + R  QI+ W+Y+R + DF+ M ++ +E++  L + F+    +I  ++ S DG+ K+L  
Sbjct: 24  KFRAKQIYHWLYIRYVEDFEAMDNLPKELKTYLKETFTTTSAQICKQEKSLDGSVKYL-- 81

Query: 92  FPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
           F A+     +  E V++  K  + TLC+SSQVGC + CSFC T     VRNL+  EI+ Q
Sbjct: 82  FQAQ---DNLTYEAVFLKMKEDKFTLCLSSQVGCKVGCSFCLTAKGGFVRNLSTGEIVYQ 138

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           VL  +            +   IP    K  NIV MGMGEPL N DNV  ++ I ++  GL
Sbjct: 139 VLAIK------------KAQNIPH--NKAINIVYMGMGEPLDNLDNVTNTIKILAELDGL 184

Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           S S RR T+STSG  P I ++G   +GV LAISLHAV + LR+ L+PIN+ Y ++ +ID 
Sbjct: 185 SISTRRQTISTSGIAPKIKKLGTLNLGVQLAISLHAVDDKLRSELMPINKAYNIQAVIDE 244

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
              +P + + +R+ FEY+++ G+ND    A  L+ +L  + AK+NLI FNP  G  Y   
Sbjct: 245 VVQFP-IDSRKRVMFEYLVIDGLNDGLDSAKKLVALLNKLKAKVNLIYFNPHEGSIYKRP 303

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             + +  F E + + G    IR  +GLDI AACGQL+
Sbjct: 304 SAEKVEAFREFLLKKGLLCTIRESKGLDISAACGQLR 340


>gi|223038329|ref|ZP_03608623.1| radical SAM enzyme, Cfr family [Campylobacter rectus RM3267]
 gi|222880186|gb|EEF15273.1| radical SAM enzyme, Cfr family [Campylobacter rectus RM3267]
          Length = 416

 Score =  239 bits (609), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 142/354 (40%), Positives = 212/354 (59%), Gaps = 34/354 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++W+Y +    F  M ++ +++R  L Q F     + V  + S DG+ K+L   
Sbjct: 20  FRAKQIFEWLYKKNATSFDEMLNLPKDLRANLVQEFYFDPLKCVKFEQSADGSIKYLFE- 78

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               +   + IE+V +P K             +R T+CVSSQVGC + C+FC T    LV
Sbjct: 79  ----LKDGLRIESVLLPMKEEQTNEQGKISRHARYTVCVSSQVGCKMGCAFCLTAKGGLV 134

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNLTA EI+ Q+L  +                IP   R+I N+V MGMGEPL N  +V K
Sbjct: 135 RNLTAGEIVGQILWIK------------RENKIP-YERRI-NVVYMGMGEPLDNLASVSK 180

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I +++ GL+ S RR T+STSG    I ++GE ++GV+LAISLHAV+++LR+ L+PIN
Sbjct: 181 AVKILTENDGLAISPRRQTVSTSGLGNQIKKLGEMDLGVLLAISLHAVTDELRSRLMPIN 240

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y +E ++DA R +P +   +R+ FEY++++G+NDS  DA  L+++L GI AK+NLI F
Sbjct: 241 KAYNIEAVMDAVRGFP-IDMRKRVMFEYLVIRGLNDSLADAKKLVRLLHGIRAKVNLIYF 299

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
           NP  G E+   +  D+V F + +   G +  IR  +GLDI AACGQLK  S++I
Sbjct: 300 NPHEGSEFERPELSDMVKFQDYLCAHGITCTIRQSKGLDISAACGQLKQRSEKI 353


>gi|242058145|ref|XP_002458218.1| hypothetical protein SORBIDRAFT_03g029230 [Sorghum bicolor]
 gi|241930193|gb|EES03338.1| hypothetical protein SORBIDRAFT_03g029230 [Sorghum bicolor]
          Length = 407

 Score =  238 bits (608), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 201/363 (55%), Gaps = 26/363 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHL 63
           K  L GM   ELE  +   G       M    +WK +Y   +    +  ++ ++++ R +
Sbjct: 47  KAMLKGMDYSELENWVQAQGFRPGQAMM----LWKCLYGNNVWAHCYDELTGLNKDFRKM 102

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122
           + +H  +    + D   + DGTRK L       +     IETV IP  + R T+CVSSQV
Sbjct: 103 ITEHADLKALTVKDIHTASDGTRKILFSLEDGSV-----IETVIIPCARGRTTVCVSSQV 157

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C FC+TG   L ++L+  EI+ Q + AR L  D  G               I+N+
Sbjct: 158 GCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFG--------------SINNV 203

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEP  N DNV K+ +I  D  GL FS R++T+STSG VP + R  +E    LA+S
Sbjct: 204 VFMGMGEPFHNIDNVIKASAIMVDGQGLQFSPRKVTVSTSGLVPQLKRFLQESNCSLAVS 263

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+A ++++RN ++PINRKY L +L+   R    L   + + FEYVML G+NDS  DA  L
Sbjct: 264 LNATTDEVRNWIMPINRKYNLNLLLGTLREELNLRKKQIVLFEYVMLSGVNDSMDDAKRL 323

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           I++++GIP KINLI FNP  G ++  +    I+ F   + + G +  +R  RG D +AAC
Sbjct: 324 IELVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLTVFVRLSRGDDQMAAC 383

Query: 363 GQL 365
           GQL
Sbjct: 384 GQL 386


>gi|42522317|ref|NP_967697.1| hypothetical protein Bd0733 [Bdellovibrio bacteriovorus HD100]
 gi|81618236|sp|Q6MPV7|RLMN_BDEBA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|39574848|emb|CAE78690.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 399

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 128/340 (37%), Positives = 200/340 (58%), Gaps = 22/340 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           + R  QI+KW+Y + + D + M+++S+E R  L    S   P ++    S DGT+K+L  
Sbjct: 49  QFRAQQIFKWVYEQRVTDPEQMTNLSKEFRQDLPSMLSFDLPPVLQHLKSVDGTQKFLFD 108

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +   + +E V IP + R TLC+SS+VGC++ C FC+TG QKL R L  E+I+ Q 
Sbjct: 109 -----MKDGMSVEAVVIPSEDRLTLCISSEVGCNMACKFCFTGKQKLKRRLRTEDIVGQF 163

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +     L +               G++I+NIV MGMGEPL N + V K++ +     G++
Sbjct: 164 MQVHDRLAE---------------GQRITNIVFMGMGEPLDNPEAVFKTIDVIHSPWGIN 208

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S+++IT+STSG VP + RV +   V LA+SL+  ++++R+ ++PIN+++  + L++AC+
Sbjct: 209 LSRKKITVSTSGIVPEMWRVAD-AKVRLAVSLNGPNDEIRSQVMPINKRWDTKALLEACK 267

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            +  +S  + ITFEYV+LKGI D    A  L+K++K +P KIN+IPFN  PG  Y   D 
Sbjct: 268 EHYRVSKDK-ITFEYVLLKGITDQLEHARQLVKLVKDVPCKINIIPFNEHPGSGYERPDD 326

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             I  F   +   G    +R   G DI AACGQL ++ +R
Sbjct: 327 DTIQAFHTELMNLGAHVLLRRSMGRDIFAACGQLTTVKER 366


>gi|218886526|ref|YP_002435847.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|254807169|sp|B8DRU2|RLMN_DESVM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|218757480|gb|ACL08379.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 367

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 134/341 (39%), Positives = 191/341 (56%), Gaps = 22/341 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R  Q+W+W++ +  R F  M+++S+  R  L +   I +PE+   K S DGT K+LL 
Sbjct: 24  RFRARQVWQWLWQKNARSFDAMTNVSKATRARLAEAARITWPEVRTVKTSSDGTVKFLL- 82

Query: 92  FPARCIGGPVEIETVYIPEKSRG-----TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
                +     +ETV IP +SR      T C+S QVGC++ C+FC TG+    RN+T  E
Sbjct: 83  ----ALADGALVETVLIPSESREGKVRMTQCLSCQVGCAMGCTFCSTGSMGFERNMTMAE 138

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
           IL QVL+AR  LGD      I           + N+V MGMGEPL N + V +SL   +D
Sbjct: 139 ILGQVLVAREHLGDDRPDHPI-----------VRNLVFMGMGEPLLNLNEVMRSLRTLND 187

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
             GL FS RRIT+ST G    +  +GE     LA+SLHA + ++R  ++P   ++ L+ L
Sbjct: 188 EFGLCFSPRRITVSTCGIEKGLRELGESGLAFLAVSLHAPNQEVRARIMPRAARWTLDDL 247

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           + A   YP L    RITFEY++L G+NDS   A  L++++    AK+NLI +NP  G  Y
Sbjct: 248 MAALESYP-LKTRERITFEYLLLGGVNDSIDHARELVRLVSRTKAKLNLIVYNPAEGLPY 306

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
               Q  I+ F + +     ++ IR  +G DI AACGQLK+
Sbjct: 307 EAPSQARILAFEQYLWSKNVTAIIRKSKGQDIKAACGQLKA 347


>gi|229542943|ref|ZP_04432003.1| radical SAM enzyme, Cfr family [Bacillus coagulans 36D1]
 gi|229327363|gb|EEN93038.1| radical SAM enzyme, Cfr family [Bacillus coagulans 36D1]
          Length = 355

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 224/377 (59%), Gaps = 27/377 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+S+ G+  ++L   +L+ G      + R  Q+W+W+Y + ++ F  M++++++   L
Sbjct: 1   MEKKSIFGLTIDQLTGWMLEHG----QKKFRAQQVWEWLYQKRVKSFAEMTNVNKDCLAL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +HF I   + V ++ S DGT K+L +     +     IETV + +    ++CV++QVG
Sbjct: 57  LEEHFHIHTLKQVVKQESKDGTVKFLFQLKDGNL-----IETVLMRQHYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  +  R+L + EI+ Q++  +    +               G ++S++V
Sbjct: 112 CNIGCSFCASGLLRKNRDLESGEIVEQIMYVQKHFDE------------AGKGERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  NF+NV   L I +   GL+   R IT+STSG  P I    + ++ V LAIS
Sbjct: 160 VMGIGEPFDNFENVVNFLKIINAPKGLAIGARHITVSTSGLAPKIYAFADLDLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR YPLE L+ A  +Y   +N RRITFEY++LK +ND   +AL L
Sbjct: 220 LHAPNNELRSRIMKINRAYPLEKLMPAIDYYLEKTN-RRITFEYILLKDVNDHKEEALQL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            K+L  K   A +NLIP+NP     Y  S+++ I+TF + +K++G +  +R   G DI A
Sbjct: 279 AKLLQDKRHLAYVNLIPYNPVNEHGYQRSEKESIMTFYDTLKKNGINCVVRQEHGTDIDA 338

Query: 361 ACGQLKSLSKRIPKVPR 377
           ACGQL+  SK+I K  R
Sbjct: 339 ACGQLR--SKQIKKANR 353


>gi|257880074|ref|ZP_05659727.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,230,933]
 gi|257882309|ref|ZP_05661962.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,502]
 gi|257885503|ref|ZP_05665156.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,501]
 gi|257891165|ref|ZP_05670818.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,410]
 gi|257893979|ref|ZP_05673632.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,408]
 gi|258614592|ref|ZP_05712362.1| hypothetical protein EfaeD_02673 [Enterococcus faecium DO]
 gi|260560313|ref|ZP_05832489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium C68]
 gi|261208250|ref|ZP_05922923.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium TC 6]
 gi|289565948|ref|ZP_06446387.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF]
 gi|293563079|ref|ZP_06677545.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162]
 gi|293567506|ref|ZP_06678851.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071]
 gi|294615994|ref|ZP_06695821.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636]
 gi|294617653|ref|ZP_06697281.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679]
 gi|294623617|ref|ZP_06702455.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317]
 gi|314940253|ref|ZP_07847426.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04]
 gi|314941689|ref|ZP_07848568.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C]
 gi|314947667|ref|ZP_07851076.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082]
 gi|314950654|ref|ZP_07853734.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A]
 gi|314992479|ref|ZP_07857900.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B]
 gi|314996873|ref|ZP_07861878.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01]
 gi|257814302|gb|EEV43060.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,230,933]
 gi|257817967|gb|EEV45295.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,502]
 gi|257821359|gb|EEV48489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,501]
 gi|257827525|gb|EEV54151.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,410]
 gi|257830358|gb|EEV56965.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,408]
 gi|260073658|gb|EEW61984.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium C68]
 gi|260077507|gb|EEW65225.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium TC 6]
 gi|289162232|gb|EFD10093.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF]
 gi|291589749|gb|EFF21552.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071]
 gi|291591180|gb|EFF22862.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636]
 gi|291596117|gb|EFF27382.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679]
 gi|291596943|gb|EFF28156.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317]
 gi|291604993|gb|EFF34461.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162]
 gi|313589016|gb|EFR67861.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01]
 gi|313592939|gb|EFR71784.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B]
 gi|313597201|gb|EFR76046.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A]
 gi|313599461|gb|EFR78304.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C]
 gi|313640573|gb|EFS05153.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04]
 gi|313645908|gb|EFS10488.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082]
          Length = 355

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 223/370 (60%), Gaps = 30/370 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+S+ G+  EEL    ++ G      + R +Q+W+W+Y + + +F  M+++S+++   
Sbjct: 1   MEKQSIYGLTNEELINWFIENG----EKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEK 56

Query: 64  LNQHFSIIYP--EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L++HF II P  ++V ++ S DGT K+L   P + +     IETV + ++   ++CV++Q
Sbjct: 57  LSEHF-IINPLKQMVVQEAS-DGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  K  R+LTA EI+ Q+++ +    +             ++G ++S+
Sbjct: 110 VGCNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDE------------RNLGERVSH 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           +V+MG+GEP  N+DNV   L I +D+ GL+   R IT+STSG    I       + V LA
Sbjct: 158 VVVMGIGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +N++R  ++ INR +P+E L++A   Y   +N RRITFEY+ML  +ND P  A 
Sbjct: 218 ISLHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTN-RRITFEYIMLNQVNDRPEHAQ 276

Query: 301 NLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L  +LK     A +NLIP+NP     +Y  S + D++ F + +K++G +  IR   G D
Sbjct: 277 QLADLLKDKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKNGVNCVIRKEHGTD 336

Query: 358 ILAACGQLKS 367
           I AACGQL+S
Sbjct: 337 IDAACGQLRS 346


>gi|254457165|ref|ZP_05070593.1| radical SAM enzyme, Cfr family [Campylobacterales bacterium GD 1]
 gi|207085957|gb|EDZ63241.1| radical SAM enzyme, Cfr family [Campylobacterales bacterium GD 1]
          Length = 359

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 219/374 (58%), Gaps = 38/374 (10%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SL+   ++EL+  L+K G        R +QI+ W+Y +    F  M ++ + +R  L 
Sbjct: 5   KPSLLDFTKKELQ-TLIKPG-------FRVNQIFGWLYHQYAESFDDMKNVPKALREELA 56

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI-----------ETVYIPEKSRG 114
           + + +    IV++++S DGT K+LL+      G  +E            E   + ++++ 
Sbjct: 57  EKYVVNPLTIVNKEVSTDGTIKYLLQMQD---GKTMEAVWLKMKDTQLDENAEVIQEAKY 113

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           T+CVS+QVGC + CSFC T      R+LTA EI+ QV+  +        C++        
Sbjct: 114 TICVSTQVGCKVGCSFCLTAKGGFTRDLTAGEIVAQVVTLK--------CDNDHKH---- 161

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE- 233
             RKI NIV MGMGEPL N DN+ K++ I  +  GL  S +R T+STSG    I ++G+ 
Sbjct: 162 -NRKI-NIVYMGMGEPLDNLDNLAKAIEIFKEDDGLCISGKRQTVSTSGLSNKIDQLGKM 219

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
           ++GV +AISLHAV ++LR  L+P+N+ + +  +I+A + +P +   +R+ FEY+++KG N
Sbjct: 220 DLGVHIAISLHAVDDELRTELIPMNKAHNINSIIEAVKRFP-IDTRKRVMFEYLVIKGKN 278

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D    A  L+K+L GI AK+NLI FNP+PG +Y    ++D+VTF++ + + G    IR  
Sbjct: 279 DDLGSAKKLVKLLHGIKAKVNLIYFNPYPGTDYDRPSKEDMVTFADYLIKHGLLCTIRDS 338

Query: 354 RGLDILAACGQLKS 367
           +G+DI AACGQLK 
Sbjct: 339 KGIDISAACGQLKE 352


>gi|307297434|ref|ZP_07577240.1| radical SAM enzyme, Cfr family [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916694|gb|EFN47076.1| radical SAM enzyme, Cfr family [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 339

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 131/334 (39%), Positives = 190/334 (56%), Gaps = 25/334 (7%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R +QI+KW+Y + + DF  M+D+   +R+ L   F     + V+ +IS DGT K+LL+  
Sbjct: 25  RANQIFKWVYAKRVLDFSEMTDLPMNLRNKLGSLFRFTTMKEVERQISIDGTEKFLLK-- 82

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              +     IETV +      T C+SSQVGC+L CSFC TG     R+L+A EI+ QV+L
Sbjct: 83  ---LEDDNHIETVVLKHPRHVTFCISSQVGCALNCSFCATGASGFTRDLSASEIVSQVIL 139

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
             +                 S+GR + NIV MGMGEP  N  NV K++ I  D +G +  
Sbjct: 140 MEN-----------------SIGRPVDNIVFMGMGEPFLNEANVYKAIKILHDPVGRNLG 182

Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            R  T+ST+G    I R+ +  + V L++SLH+ S + R+ L+PIN+KYPL+ L     +
Sbjct: 183 IRHFTISTAGIPEGIKRLADSGMDVRLSVSLHSASEETRSSLMPINKKYPLDSLRKVLDY 242

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y       RITFEY ++KG+NDS  D   L + L GI + +N+IP NP        SD +
Sbjct: 243 YQQ-KTGNRITFEYALIKGVNDSKEDLTKLGEFLTGIKSFVNIIPVNPVKPVFDRPSD-R 300

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +I  FSE +K++G+   +R  +G DI AACGQL+
Sbjct: 301 EIAVFSESLKKAGFECAVRHEKGTDIEAACGQLR 334


>gi|253682293|ref|ZP_04863090.1| radical SAM enzyme, Cfr family [Clostridium botulinum D str. 1873]
 gi|253562005|gb|EES91457.1| radical SAM enzyme, Cfr family [Clostridium botulinum D str. 1873]
          Length = 343

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 130/337 (38%), Positives = 195/337 (57%), Gaps = 25/337 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-KISCDGTRKWLL 90
           + R  QI++WIY +    F  M++IS+  +  L   F I  P I+ + K + DGT K+L 
Sbjct: 23  KFRAKQIFEWIYKKSAFSFHEMTNISKASKEKLKNSFYIEIPNIIKKYKSNIDGTEKFLF 82

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
            +    I     IE+V +  K   ++CVS+Q+GC + C FC +  + +VRNLT+ EI+ Q
Sbjct: 83  EYKDGNI-----IESVVMRYKHGNSICVSTQIGCRMGCKFCASTVEGVVRNLTSGEIVAQ 137

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           +L A+                   +G +ISN+V+MG GEPL N+DNV K + + +D   L
Sbjct: 138 ILKAQQ-----------------EIGERISNVVLMGSGEPLDNYDNVVKFIKLINDDNAL 180

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
              +R ITLST G VP I  + +E + + LAISLHA ++++R  ++P+  KY ++ L+DA
Sbjct: 181 KIGQRHITLSTCGIVPKIKELADEKLQITLAISLHAPNDEIRKSMMPVANKYNIKELLDA 240

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           C++Y  ++N RRITFEY ++ GINDS ++A  L   LKGI   +NLIP N     +Y  S
Sbjct: 241 CKYYSRITN-RRITFEYALVNGINDSAKNAEELFNQLKGILCHVNLIPVNEIKENDYKRS 299

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             K+I  F   + + G  + IR   G DI  ACGQL+
Sbjct: 300 RAKNIEEFKNILIKYGIETTIRREMGSDINGACGQLR 336


>gi|297617050|ref|YP_003702209.1| radical SAM enzyme, Cfr family [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144887|gb|ADI01644.1| radical SAM enzyme, Cfr family [Syntrophothermus lipocalidus DSM
           12680]
          Length = 371

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 211/367 (57%), Gaps = 21/367 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ LIGM + +LE  +  +G        R+ Q+++W+Y   + +F+ M+D+ +++R  + 
Sbjct: 2   KKELIGMTKTDLESMVKSLGGEA----FRSRQLYRWLYKNLVFEFENMTDLPRDLRDRVK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTLCVSSQ 121
           Q  SI  P +  E+IS DGT K LL      +     +E V IP+    + R TLC+SSQ
Sbjct: 58  QVASITLPVVERERISRDGTVKVLL-----GLQDGQHVEMVMIPQTRAGRHRYTLCISSQ 112

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC TG    VRNL   EI  QVLL    L +    E            +++N
Sbjct: 113 VGCPIGCPFCATGRSGFVRNLAVNEITGQVLLGLLRLRNSNTFE------TQGSATRLTN 166

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           +V MGMGEP  N+  V K + + +D  GL+  +R IT+ST+G V  I R+ +E + V LA
Sbjct: 167 VVFMGMGEPFLNYSAVMKCIRLMNDPDGLNIGQRHITVSTAGEVRGIRRLAQEGLQVTLA 226

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLH+  +++R+ LVP+NRKYPL  L +A R Y G++  RR+T EYV+L+G+N S +D  
Sbjct: 227 VSLHSARDEVRDWLVPLNRKYPLSELEEALRFYCGVTK-RRVTLEYVLLEGVNTSRQDVA 285

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           +LI   + +   +NLIP+N     E+       ++ F + +K +G +S +R  RG DI  
Sbjct: 286 SLIDFARPLLCNVNLIPYNQIEKAEFRRPSPSTVLRFQQWLKEAGVNSVVREERGGDIEG 345

Query: 361 ACGQLKS 367
           ACGQL++
Sbjct: 346 ACGQLRA 352


>gi|46581308|ref|YP_012116.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|81404173|sp|Q727F1|RLMN_DESVH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|46450729|gb|AAS97376.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234971|gb|ADP87825.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris RCH1]
          Length = 364

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 204/365 (55%), Gaps = 27/365 (7%)

Query: 9   LIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++ +  EELE  +  ++G P    R R  Q+W+W++ +  R F  M+++S+  R  L + 
Sbjct: 4   ILNLTYEELEAFMTAELGEP----RFRARQVWQWLWQKCARSFDEMTNVSKATRARLAEK 59

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTL----CVSSQV 122
             I +PE+   + S DGT K+LLR     +     +ETV IP  SR GTL    C+S QV
Sbjct: 60  AVITWPEVETVQKSADGTTKFLLRLADGAL-----VETVLIPSASREGTLRITQCLSCQV 114

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C+FC TGT    RN+T  EIL QVL+AR+ LGD      I           + N+
Sbjct: 115 GCAMGCTFCSTGTMGFERNMTMGEILGQVLVARAHLGDSRPDHPI-----------LRNL 163

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N + V +SL   +D  GLSFS RRIT+ST G    +  +GE     LA+S
Sbjct: 164 VFMGMGEPLLNLNEVMRSLRTLNDEFGLSFSPRRITVSTCGIEKGLRELGESGLAFLAVS 223

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA + ++R  ++P    + L+ LI A   YP L    R+TFEY++L G+ND    A  L
Sbjct: 224 LHAPNQEIRKRIMPKAAHWHLDDLITALESYP-LKTRERVTFEYLLLGGVNDGIEHAREL 282

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           ++++     K+NLI +NP  G  Y     + I+ F + +     ++ IR  +G DI AAC
Sbjct: 283 VRLVSRTKGKLNLIVYNPAEGDPYDAPTPERILAFEQYLWSKNITAIIRKSKGQDIKAAC 342

Query: 363 GQLKS 367
           GQLK+
Sbjct: 343 GQLKA 347


>gi|317485889|ref|ZP_07944749.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6]
 gi|316922863|gb|EFV44089.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6]
          Length = 404

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 133/345 (38%), Positives = 193/345 (55%), Gaps = 22/345 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           + R +Q+W+WI+ +    F  M+D+S+++R  L +   I+ PEIV  + S DGT K LLR
Sbjct: 71  KFRAAQVWQWIWQKHATSFDAMTDVSKQLRAKLAEVAEIVLPEIVTVQTSSDGTEKLLLR 130

Query: 92  FPARCIGGPVEIETVYIPEKS-----RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
                +     +ETV +P        R   CVSSQ+GC++ C+FC TGT   +RN+TA E
Sbjct: 131 LRDGAL-----VETVILPSTGQDGSVRIAQCVSSQIGCAMGCTFCSTGTMGFIRNMTAGE 185

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
           IL QVL+AR  LGD      I+  +I        N+V MGMGEPL N     ++L + + 
Sbjct: 186 ILSQVLVARMRLGD----NRIDHPII-------RNLVFMGMGEPLLNLRETTRALEMLNH 234

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
             G+ FS RRIT+ST G    +  +G+     LA+SLHA + DLR  ++P    + L+ L
Sbjct: 235 DKGMDFSPRRITVSTCGIKAGLRELGDSGLAFLAVSLHAPNQDLRAKIMPKAANWHLDDL 294

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           +     YP L     ITFEY++L G+ND P  A  L K++  +  K+NLI +NP     Y
Sbjct: 295 MATLESYP-LKTREHITFEYLLLGGVNDQPEHARELAKLVSRVKGKLNLIAYNPSETQLY 353

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
               + DI+ F + +   G ++ +R  +G DI AACGQLKS  +R
Sbjct: 354 KAPTEADILAFEKILWSKGVTAILRKSKGQDIKAACGQLKSDWER 398


>gi|319760652|ref|YP_004124590.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039366|gb|ADV33916.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 359

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 146/372 (39%), Positives = 210/372 (56%), Gaps = 28/372 (7%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            LKK +L+ M  ++L     K+G        R+ QI  WIY +   DF  M+++ +++R 
Sbjct: 2   MLKKINLLDMSPKKLLVFFNKLG----ECAFRSDQIMDWIYKKYCSDFNKMTNLHKDLRV 57

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            LNQ   I  P I  E+ S DGTRKW++R     I     +ETVYIP+ +R TLC+SSQ 
Sbjct: 58  KLNQISEINAPIITHEQESSDGTRKWMMR-----IHDDKYVETVYIPDNNRATLCISSQS 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF-----PGCEDIEGMVIPSVGR 177
           GC+L CSFC T     ++NL   EI+ QV      +  +       C ++    IP    
Sbjct: 113 GCALGCSFCGTAKLGFIKNLRTSEIVGQVWRIARFISHYNKQQVKNCNNL----IP---- 164

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            I++IV MGMGEPL N  NV  S+ I  +S G + SK  +TLSTSG VP I ++ + + V
Sbjct: 165 -ITHIVFMGMGEPLLNLMNVVSSIQIILNSSGFNLSKHHVTLSTSGVVPGIDKLKDMVDV 223

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDS 295
            LA+SLHA ++ +RN ++PIN+KY ++ L+ + R Y     SN +++T EYV+L  IND 
Sbjct: 224 SLAVSLHAPNDVIRNKIMPINKKYNIDCLLQSIRCYLQKTKSNNKKVTIEYVLLNRINDE 283

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYL--CSDQKDIVTFSECIKRSGYSSPIRTP 353
              A  L K L  +P K+NL+ +N     +YL   SD + +  F + +K  G  + IR  
Sbjct: 284 IEHAHELAKKLITLPCKVNLMRWNSIKNIKYLKSTSDAR-LNNFYKVLKNYGIVTTIRKV 342

Query: 354 RGLDILAACGQL 365
           RG DI A+CGQL
Sbjct: 343 RGADIHASCGQL 354


>gi|328951573|ref|YP_004368908.1| Ribosomal RNA large subunit methyltransferase N [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451897|gb|AEB12798.1| Ribosomal RNA large subunit methyltransferase N [Marinithermus
           hydrothermalis DSM 14884]
          Length = 353

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 133/333 (39%), Positives = 186/333 (55%), Gaps = 21/333 (6%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  QI  W+Y  G+R+F  M+D+ + +R  L   + I    +V    S DG+ K+L    
Sbjct: 36  RKRQIAHWLYAWGVREFDEMTDLPRALRAELAHTWRISEFSLVQAFPSADGSTKYLY--- 92

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              +    + E VY+P K R T+C+SS VGC   C+FC TG  +  RNLTA EIL Q+L 
Sbjct: 93  --TLHDGRQTEAVYMPYKDRRTICISSMVGCPAGCTFCATGQMRFGRNLTAPEILDQLLA 150

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
           A    G  P              R+I N+V+MGMGEPL N  NV K++        L+ S
Sbjct: 151 AAYHQGISP--------------REIRNVVLMGMGEPLLNLTNVLKAVRRMIHKQALAMS 196

Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            RRITLST G    I R+ EE +GV LA+SLHA  ++ R  ++P   +Y +E ++DA RH
Sbjct: 197 PRRITLSTVGIPRGIYRLAEEDVGVKLALSLHAPDDETRRRIIPTAHRYAIEEIMDAVRH 256

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +  RR+T EY +L+G+ND    A  L K  +G+ A +NLIPFNPW G  +  S ++
Sbjct: 257 YYRRTK-RRVTLEYTLLRGVNDHLWQAKMLAKHTRGLTAHVNLIPFNPWEGAPHEGSSRE 315

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F+  ++ +G    +R  RG D+ AACGQL
Sbjct: 316 QIRRFAAVLEAAGIPVSVRWSRGRDVGAACGQL 348


>gi|182420424|ref|ZP_02951644.1| radical SAM enzyme, Cfr family [Clostridium butyricum 5521]
 gi|237668483|ref|ZP_04528467.1| radical SAM enzyme, Cfr family [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182375710|gb|EDT73310.1| radical SAM enzyme, Cfr family [Clostridium butyricum 5521]
 gi|237656831|gb|EEP54387.1| radical SAM enzyme, Cfr family [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 347

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 138/336 (41%), Positives = 195/336 (58%), Gaps = 26/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91
            R  QI  WIY +G+ DF+GM +I + + + L ++F+I  PEIV+  K   DGT K+LL 
Sbjct: 24  FRGKQILSWIY-KGVMDFKGMKNIPKSLINKLEENFTITMPEIVEVYKSELDGTEKFLLG 82

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
           F    +     IE+V +  K   ++C+S+QVGC + C FC +  +  VRNLT  EIL +V
Sbjct: 83  FSDGNL-----IESVLMRYKHGNSICISTQVGCRMGCKFCASTIEGRVRNLTTGEILSEV 137

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +  ++ +G+                 +ISNIV+MG GEPL N+DNV K L I S   GL+
Sbjct: 138 IAVQNYIGE-----------------RISNIVLMGSGEPLDNYDNVVKFLEIVSADYGLN 180

Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
             +R ITLST G VP I  + + E+ + LAISLHA S++ R  ++PI  KY +  L++AC
Sbjct: 181 IGQRHITLSTCGIVPKIYELADKELSITLAISLHAFSDEKRKEIMPIANKYTISELLEAC 240

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R+Y      RRITFEY ++K +ND   DA  L K+L G+   +NLIP N      +  S 
Sbjct: 241 RYYLN-KTKRRITFEYALVKDVNDGMEDAKALGKLLSGMLCHVNLIPVNEIKENSFKRSS 299

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +K I  FSE ++ +G     R   G DI AACGQL+
Sbjct: 300 KKAIDDFSEILRNNGIEVTTRREMGSDINAACGQLR 335


>gi|120601511|ref|YP_965911.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           vulgaris DP4]
 gi|205829747|sp|A1VAL8|RLMN_DESVV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120561740|gb|ABM27484.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfovibrio vulgaris DP4]
          Length = 364

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 204/365 (55%), Gaps = 27/365 (7%)

Query: 9   LIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++ +  EELE  +  ++G P    R R  Q+W+W++ +  R F  M+++S+  R  L + 
Sbjct: 4   ILNLTYEELEAFMTAELGEP----RFRARQVWQWLWQKCARSFDEMTNVSKATRARLAEK 59

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTL----CVSSQV 122
             I +PE+   + S DGT K+LLR     +     +ETV IP  SR GTL    C+S QV
Sbjct: 60  AVITWPEVETVQKSADGTTKFLLRLADGAL-----VETVLIPSASREGTLRITQCLSCQV 114

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C+FC TGT    RN+T  EIL QVL+AR+ LGD      I           + N+
Sbjct: 115 GCAMGCTFCSTGTMGFERNMTMGEILGQVLVARAHLGDSRPDHPI-----------LRNL 163

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N + V +SL   +D  GLSFS RRIT+ST G    +  +GE     LA+S
Sbjct: 164 VFMGMGEPLLNLNEVMRSLRTLNDEFGLSFSPRRITVSTCGIEKGLRELGESGLAFLAVS 223

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA + ++R  ++P    + L+ LI A   YP L    R+TFEY++L G+ND    A  L
Sbjct: 224 LHAPNQEIRKRIMPKAAHWHLDDLITALESYP-LKTRERVTFEYLLLGGVNDGIEHAREL 282

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           ++++     K+NLI +NP  G  Y     + I+ F + +     ++ IR  +G DI AAC
Sbjct: 283 VRLVSRTKGKLNLIVYNPAEGDPYDAPTPERILAFEQYLWSKNITAIIRKSKGQDIKAAC 342

Query: 363 GQLKS 367
           GQLK+
Sbjct: 343 GQLKA 347


>gi|315640014|ref|ZP_07895140.1| cfr family radical SAM enzyme [Enterococcus italicus DSM 15952]
 gi|315484223|gb|EFU74693.1| cfr family radical SAM enzyme [Enterococcus italicus DSM 15952]
          Length = 359

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 136/358 (37%), Positives = 214/358 (59%), Gaps = 28/358 (7%)

Query: 26  IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCD 83
           + Q   + R +Q+W+W+Y + ++ F  M+++S+     L++ F I  ++  +V E  + D
Sbjct: 24  LEQGEKKFRATQLWEWLYQKRVQSFTQMTNLSKGFIEKLDETFIINPLHQVVVQE--AQD 81

Query: 84  GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
           GT K+L + P   +     IETV + ++   ++CV++QVGC++ C+FC +G  K  R+LT
Sbjct: 82  GTVKYLFQLPDNHM-----IETVMMTQEYGLSVCVTTQVGCNIGCTFCASGILKKQRDLT 136

Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
           A EI+ Q++L +  L D             + G ++S+IV+MG+GEP  N+ NV   L+I
Sbjct: 137 AGEIVAQIMLVQHYLDD------------KNEGSRVSHIVVMGIGEPFDNYQNVMNFLTI 184

Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYP 262
            +D+ GL+   R IT+STSG VP I    E  + V LAISLHA +ND+R  ++ INR +P
Sbjct: 185 VNDAKGLAIGARHITVSTSGLVPKIREFAENGLQVNLAISLHAPNNDVRTSIMRINRTFP 244

Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNP 320
           +E L+DA  +Y   +N RRITFEY+ML  +ND    A  L  +LK       +NLIP+NP
Sbjct: 245 IEKLMDAVDYYLEKTN-RRITFEYIMLSHVNDRVEHAQQLADLLKDKKKLTYVNLIPYNP 303

Query: 321 WPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
                +Y  S + D++ F + +K++G +  IR   G DI AACGQL+  SK++ +V R
Sbjct: 304 VSEHDQYARSSRNDVMKFYDVLKKNGINCVIRKEYGTDIDAACGQLR--SKQMKQVAR 359


>gi|114776700|ref|ZP_01451743.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1]
 gi|114552786|gb|EAU55217.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1]
          Length = 357

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 129/360 (35%), Positives = 199/360 (55%), Gaps = 25/360 (6%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L GM  ++L       G+   H     + I++  +     D     D+   +R  L +H 
Sbjct: 7   LNGMNHDQLLALCGAAGVSPAHADRLRAAIFR--HYGSDTDINNTPDLPLRLRSYLAEHT 64

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           +++ P         DGTRK LL      +    E+ETV IP   R T C+S+QVGC++ C
Sbjct: 65  ALLQPASTATSEGEDGTRKLLL-----AMADGREVETVLIPGNGRLTQCISTQVGCAVGC 119

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
           +FC T T  L RNLTA E++ +V   + +                  GR++ N+V+MGMG
Sbjct: 120 TFCLTATAGLTRNLTAAEMVAEVTAGQRI-----------------SGRQVRNLVLMGMG 162

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVS 247
           EPL N+D V   + +A+D  G++FS  R+TLSTSG VP + R + +E+   LA+SL+A +
Sbjct: 163 EPLHNYDEVAHFVRLATDPKGMAFSPNRVTLSTSGLVPAMQRMIRDELPCNLAVSLNATN 222

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           + +R+ ++PINRKYP+ ML+D  R Y  +   +R+  EYV+L GINDS  DA+ L +++ 
Sbjct: 223 DAVRDTIMPINRKYPIAMLLDTVREYIRVRGNKRVLIEYVLLDGINDSQADAIRLCELMA 282

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G+   +NL+PFN +PG  +       +  F   +  +G  + +R  +G DI AACGQLK+
Sbjct: 283 GMGCTVNLLPFNAYPGLPFQRPADAAVSAFRAILVEAGIITVVRESKGRDIAAACGQLKT 342


>gi|227552455|ref|ZP_03982504.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330]
 gi|257888305|ref|ZP_05667958.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,141,733]
 gi|257896805|ref|ZP_05676458.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium Com12]
 gi|257899742|ref|ZP_05679395.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium Com15]
 gi|293378566|ref|ZP_06624729.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1]
 gi|293573136|ref|ZP_06684073.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980]
 gi|227178412|gb|EEI59384.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330]
 gi|257824359|gb|EEV51291.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,141,733]
 gi|257833370|gb|EEV59791.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium Com12]
 gi|257837654|gb|EEV62728.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium Com15]
 gi|291606774|gb|EFF36159.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980]
 gi|292642895|gb|EFF61042.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1]
          Length = 355

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 222/370 (60%), Gaps = 30/370 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+S+ G+  EEL    ++ G      + R +Q+W+W+Y + + +F  M+++S+++   
Sbjct: 1   MEKQSIYGLTNEELINWFIENG----EKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEK 56

Query: 64  LNQHFSIIYP--EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L+ HF II P  ++V ++ S DGT K+L   P + +     IETV + ++   ++CV++Q
Sbjct: 57  LSAHF-IINPLKQMVVQEAS-DGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  K  R+LTA EI+ Q+++ +    +             ++G ++S+
Sbjct: 110 VGCNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDE------------RNLGERVSH 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           +V+MG+GEP  N+DNV   L I +D+ GL+   R IT+STSG    I       + V LA
Sbjct: 158 VVVMGIGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +N++R  ++ INR +P+E L++A   Y   +N RRITFEY+ML  +ND P  A 
Sbjct: 218 ISLHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTN-RRITFEYIMLNQVNDRPEHAQ 276

Query: 301 NLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L  +LK     A +NLIP+NP     +Y  S + D++ F + +K++G +  IR   G D
Sbjct: 277 QLADLLKDKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKNGVNCVIRKEHGTD 336

Query: 358 ILAACGQLKS 367
           I AACGQL+S
Sbjct: 337 IDAACGQLRS 346


>gi|255323622|ref|ZP_05364752.1| radical SAM enzyme, Cfr family [Campylobacter showae RM3277]
 gi|255299336|gb|EET78623.1| radical SAM enzyme, Cfr family [Campylobacter showae RM3277]
          Length = 363

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 140/348 (40%), Positives = 203/348 (58%), Gaps = 34/348 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++W+Y +    F  M ++ +++R  L Q F +   + V  + S DG+ K+L   
Sbjct: 20  FRAKQIFEWLYKKNATSFDEMLNLPKDLRANLVQEFYLDPLKCVKFERSADGSIKYLFE- 78

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               +   + IE+V +P K             +R T+CVSSQVGC + CSFC TG   L 
Sbjct: 79  ----LKDGLRIESVLLPMKEELNDENGEVTRHARYTICVSSQVGCRMGCSFCLTGKSGLT 134

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNLT  EI+ Q+L           C   E   IP   R   N+V MGMGEPL N +NV K
Sbjct: 135 RNLTPGEIVGQIL-----------CIKRENK-IPYERR--VNVVYMGMGEPLDNLENVSK 180

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I  ++ GL+ + RR T+STSG    I ++GE ++GV+LAISLHAV+N+LR+ L+PIN
Sbjct: 181 AIKILKENDGLAITPRRQTVSTSGLGSQIKKLGEMDLGVLLAISLHAVTNELRSKLMPIN 240

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
             Y +E +++A R +P +   +R+ FEY+++K +ND  +DA  L+ +L GI AK+NLI F
Sbjct: 241 NAYKIESVMEAVRGFP-IDMRKRVMFEYLVIKDMNDGIKDAKKLVSLLHGIKAKVNLIYF 299

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           NP  G EY   +  D+  F   ++  G +  IR  +GLDI AACGQLK
Sbjct: 300 NPHEGSEYGRPNTADMEAFQTYLRDHGVTCTIRQSKGLDISAACGQLK 347


>gi|239904707|ref|YP_002951445.1| hypothetical protein DMR_00680 [Desulfovibrio magneticus RS-1]
 gi|259491985|sp|C4XTP4|RLMN_DESMR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|239794570|dbj|BAH73559.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 351

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 134/360 (37%), Positives = 201/360 (55%), Gaps = 22/360 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +LI +   ELE  ++ +G P      R  Q+W+W++ +  R+  GM+D+S+ +R  L + 
Sbjct: 3   NLIDLTFHELESLIVSLGEPP----YRARQVWQWLWQKRCREIAGMTDVSKALRARLEEV 58

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             I +P +   + S DGT K+LL      +     +E V IPEK   T C+S+QVGC++ 
Sbjct: 59  AEIRWPVVEMVRESRDGTVKFLL-----ALDDGERVECVLIPEKDHYTACLSTQVGCAMG 113

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG     RN+T  E+L QVL+ R  L D              V   + N+V MGM
Sbjct: 114 CGFCATGMLGFRRNMTPGEMLGQVLVGRQYLTD------------KGVELGLRNLVFMGM 161

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N++N+ K+L       GL FS RRIT+ST+G   ++  +G      LAISLHA +
Sbjct: 162 GEPLLNYENLLKTLEALHHPQGLDFSGRRITVSTAGVARHLLDLGRTGLCSLAISLHAPT 221

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
              R  ++P   +  L+ L+D    YP L    R+TFEY++L G+ND+  DA  L+++L 
Sbjct: 222 QAQRERIMPGAARLELDKLMDLLAQYP-LKPRERLTFEYLLLAGVNDADADARELVRLLS 280

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            + AK+NLI FN  PG  Y   D+  ++ F + +K  G ++ +R  +G DI AACGQL++
Sbjct: 281 RVKAKVNLIVFNATPGLPYSPPDEARVLAFQDILKSKGLTATLRKSKGSDIAAACGQLRA 340


>gi|115438803|ref|NP_001043681.1| Os01g0640800 [Oryza sativa Japonica Group]
 gi|113533212|dbj|BAF05595.1| Os01g0640800 [Oryza sativa Japonica Group]
 gi|218188735|gb|EEC71162.1| hypothetical protein OsI_03021 [Oryza sativa Indica Group]
 gi|222618932|gb|EEE55064.1| hypothetical protein OsJ_02780 [Oryza sativa Japonica Group]
          Length = 405

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 140/360 (38%), Positives = 199/360 (55%), Gaps = 26/360 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHLLNQ 66
           L GM   ELE  +   G       M    +WK +Y   +    +  ++ ++++ R +L  
Sbjct: 48  LKGMDYPELENWVRSQGFRPGQAMM----LWKCLYGNNVWAHCYDELAGLNKDFRKMLTD 103

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCS 125
           H  +    + D   + DGTRK L       +     IETV IP  S R T+CVSSQVGC+
Sbjct: 104 HADLKALTVKDILNASDGTRKILFSLEDGSV-----IETVVIPCTSGRTTVCVSSQVGCA 158

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC+TG   L ++L+  EI+ Q + AR L  D  G               I+N+V M
Sbjct: 159 MNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFG--------------SITNVVFM 204

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N DNV K+ +I  D  GL FS R++T+STSG VP I R  +E    LA+SL+A
Sbjct: 205 GMGEPLHNIDNVLKASAIMVDEQGLQFSPRKVTVSTSGLVPQIKRFLQESNCALAVSLNA 264

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN ++PINRKY L +L+   R    L    ++ FEYVML G+NDS  DA  L+ +
Sbjct: 265 TTDEVRNWIMPINRKYNLSLLLGTLREEIRLKKKYKVFFEYVMLAGVNDSVDDAKRLVDL 324

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIP KINLI FNP  G ++  +  + I+ F   + + G    +R  RG D +AACGQL
Sbjct: 325 VRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNILIQDGLVVFVRLSRGDDQMAACGQL 384


>gi|332686368|ref|YP_004456142.1| ribosomal RNA large subunit methyltransferase N [Melissococcus
           plutonius ATCC 35311]
 gi|332370377|dbj|BAK21333.1| ribosomal RNA large subunit methyltransferase N [Melissococcus
           plutonius ATCC 35311]
          Length = 357

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 220/372 (59%), Gaps = 30/372 (8%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           + ++K+++ G+ +E L    L+ G      + R +Q+W+W+Y++ +  F+ M+++S+ + 
Sbjct: 4   DIMQKQTIYGLTKEALVNWFLENG----EKKFRANQVWEWLYIKRVESFEDMTNLSKTLI 59

Query: 62  HLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
            LL+QHF   ++   I+ E  + DGT K+L   P + +     IETV + ++   ++CV+
Sbjct: 60  SLLDQHFVIQVLRQTIIQE--AKDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVT 112

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +QVGC++ C+FC +G  K  RNLTA EI+ Q+++ +                   +G ++
Sbjct: 113 TQVGCNMGCTFCASGLLKKNRNLTAGEIVAQIMMVQRYFDQ------------RKLGERV 160

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           S++V+MG+GEP  N++ + + + I +D  GL+   R +T+ST G VP I +  +  + V 
Sbjct: 161 SHVVVMGIGEPFDNYEQLMQFIQIINDEKGLAIGARHLTVSTCGLVPQIKKFAQTGLQVN 220

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLHA +N +R+ ++ IN  +P+E L+     Y   +N RR+TFEY+ML+ +ND P  
Sbjct: 221 LAISLHASNNQIRSSIMRINHTFPIEKLMQTIDEYIEQTN-RRVTFEYIMLQKVNDYPEH 279

Query: 299 ALNLIKILKGIP--AKINLIPFNPWPGCEYLC-SDQKDIVTFSECIKRSGYSSPIRTPRG 355
           A  L  +LK     A +NLIP+NP    +  C S++  ++ F + +K++G +  IR   G
Sbjct: 280 AQELADLLKDKKKLAYVNLIPYNPVNEHDQYCRSEKASVLKFYDILKKNGINCVIRKEHG 339

Query: 356 LDILAACGQLKS 367
            DI AACGQL+S
Sbjct: 340 TDIDAACGQLRS 351


>gi|315658497|ref|ZP_07911369.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590]
 gi|315496826|gb|EFU85149.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590]
          Length = 364

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 209/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
             K+S+  +  +E+++ L++ G      + R  QI++W+Y + +  F+ M+++S+++R L
Sbjct: 16  FDKQSIYSLRFDEMQQWLVEQG----QQKFRAKQIYEWLYQKRVNSFEEMTNLSKDLRKL 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  HF +     V ++ S DGT K+L       +     IETV +      ++CV++QVG
Sbjct: 72  LADHFVMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L               +   ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG VP I     EEI +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIVPRIYDFADEEIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +D+R+ L+PINR Y ++ L++A R+Y   +N RRITFEY +  G+ND    A  L
Sbjct: 233 LHAAKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTN-RRITFEYGLFGGVNDQLEHAREL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKNLNCHVNLIPVNHVPERNYVKTSKDDIFKFEKELKRLGVNATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|229545365|ref|ZP_04434090.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX1322]
 gi|307295833|ref|ZP_07575665.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0411]
 gi|229309472|gb|EEN75459.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX1322]
 gi|306496164|gb|EFM65743.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0411]
 gi|315028571|gb|EFT40503.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4000]
          Length = 357

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 222/379 (58%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    D  G ++           ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYVNVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R +++ INR +P+E L+ A   Y   +N RR+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTLIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP     +Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|187734933|ref|YP_001877045.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC
           BAA-835]
 gi|205829710|sp|B2UNF2|RLMN_AKKM8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|187424985|gb|ACD04264.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 359

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 132/364 (36%), Positives = 208/364 (57%), Gaps = 32/364 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           ++  + EE LL       H + RT Q+  W++ + +  F  MS++   +++LL ++F   
Sbjct: 6   LITAQTEEKLLAFLTEHGHTKFRTQQVLDWVWRKRVTTFDAMSNLPPALKNLLAENFRFH 65

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-------EKS-RGTLCVSSQVG 123
            PEIV+   S D TRK+L +     +     +E+V IP       EKS R TLCVSSQVG
Sbjct: 66  TPEIVEIHGSADTTRKFLTKMEDGSL-----VESVIIPAAAAENGEKSERVTLCVSSQVG 120

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C FC +G   L R+LT  EI+ Q+L A ++                  G++++NIV
Sbjct: 121 CAFGCKFCASGLLGLKRHLTTGEIIGQILSAEAI-----------------AGKRVNNIV 163

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
            MGMGEPL NFDN+  +L I +   GL    R IT+STSGFVP + ++      + LA+S
Sbjct: 164 FMGMGEPLSNFDNLADALEIITSHRGLEIGARHITISTSGFVPGLKKLAAYPRQIRLAVS 223

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH  ++++R+ ++P+N+K+PL  LI A   +    N +  T EY++++ INDSP+DA +L
Sbjct: 224 LHGATDEVRDQIMPVNKKWPLSQLIPALEEWNRGRN-QMPTLEYILIRDINDSPKDASHL 282

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           ++I K + AK+NLIP+N   G  +    ++   +F + + ++     +R  +G DI AAC
Sbjct: 283 VRIAKRLHAKVNLIPYNTVEGLPWKRPSEERCRSFRDAVHKARIPVTMRYEKGHDINAAC 342

Query: 363 GQLK 366
           GQL+
Sbjct: 343 GQLR 346


>gi|315301572|ref|ZP_07872683.1| radical SAM enzyme, Cfr family [Listeria ivanovii FSL F6-596]
 gi|313630054|gb|EFR98076.1| radical SAM enzyme, Cfr family [Listeria ivanovii FSL F6-596]
          Length = 368

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 140/382 (36%), Positives = 224/382 (58%), Gaps = 32/382 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 2   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 57

Query: 64  LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  +F  + +  ++V E  S DGT K+L +     +     IETV + ++   ++CV++Q
Sbjct: 58  LMANFVMNTLEAQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 110

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  K  R+LTA EI+ Q++  +  L D              +  ++S+
Sbjct: 111 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDD------------RQLEERVSH 158

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240
           +V+MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LA
Sbjct: 159 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 218

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N RRITFEY+MLKG+ND  ++AL
Sbjct: 219 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKTN-RRITFEYIMLKGVNDHKKEAL 277

Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L  +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G D
Sbjct: 278 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 337

Query: 358 ILAACGQLKSLSKRIPKVPRQE 379
           I AACGQL+  SK+I +V  +E
Sbjct: 338 IDAACGQLR--SKQIKRVGVRE 357


>gi|319955823|ref|YP_004167086.1| 23S rRNA m(2)a-2503 methyltransferase [Nitratifractor salsuginis
           DSM 16511]
 gi|319418227|gb|ADV45337.1| 23S rRNA m(2)A-2503 methyltransferase [Nitratifractor salsuginis
           DSM 16511]
          Length = 370

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 136/346 (39%), Positives = 201/346 (58%), Gaps = 30/346 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI+ WIY +    F+ M+++ + +R  L + + +   E+V ++ S DG+ K+L R 
Sbjct: 33  FRAKQIYNWIYHKHADSFEEMANLPKTMRQELAKKYELHPLEMVSKQESRDGSIKYLFRL 92

Query: 93  PARCIGGPVEI------ETVY-----IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                G  VE       E  Y     +    R T+C+SSQVGC + C+FC T     +RN
Sbjct: 93  HD---GHTVEAVLLLMKEAQYHEDGTLKHHRRYTVCISSQVGCKVGCAFCLTAKGGFIRN 149

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L+A EI+ QVL            E  +   IPS  R   N+V MGMGEPL N DNV K++
Sbjct: 150 LSAGEIVDQVL------------EIYKDQNIPSNHR--VNLVYMGMGEPLDNLDNVAKAV 195

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRK 260
            I +D  G+S S  R T+STSG    I ++G  ++GV LAISLHAV ++LR  L+PIN+ 
Sbjct: 196 KIFADMDGMSISPNRQTISTSGLSSKIEKLGRMDLGVNLAISLHAVDDELREKLMPINKA 255

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +  +I+A R++P ++  +++ FEY+++K +ND    A  L+K+L G+ AK+NLI FNP
Sbjct: 256 YNIASIIEAVRNFP-VNQRKKVLFEYLVIKHVNDDIASAKKLVKLLNGLKAKVNLIYFNP 314

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +PG E+   + +D+  F E +   G    IR  +GLDI AACGQL+
Sbjct: 315 YPGTEFERPEPEDMKRFQEYLLSKGVLCTIRESKGLDISAACGQLR 360


>gi|313680864|ref|YP_004058603.1| 23S rRNA m(2)a-2503 methyltransferase [Oceanithermus profundus DSM
           14977]
 gi|313153579|gb|ADR37430.1| 23S rRNA m(2)A-2503 methyltransferase [Oceanithermus profundus DSM
           14977]
          Length = 370

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 131/333 (39%), Positives = 185/333 (55%), Gaps = 21/333 (6%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  QI  W+Y +G R+F+ M+D+ + +R  L Q + I    +V    S DG+ K+L    
Sbjct: 53  RKGQIASWLYKKGAREFEEMTDLPRRLREALEQDWRISEFALVQAFPSSDGSVKYLF--- 109

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              +      E VY+P   R T+C+SSQVGC   C+FC TG     RNLT  EIL Q+L 
Sbjct: 110 --TLHDGRRTEAVYLPYADRKTVCISSQVGCPAGCTFCATGKMGFGRNLTGPEILDQILA 167

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                G  P              R+I N+V+MGMGEPL N++N+  ++    D   L+ S
Sbjct: 168 VAYHQGLGP--------------REIRNVVLMGMGEPLLNYENIAWAVRRMLDKNALAMS 213

Query: 214 KRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            RRITLST G    I R+ E ++GV LA+SLHA  ++ R  ++P   +Y +  +++A R 
Sbjct: 214 PRRITLSTVGIPGGIRRLAEGDLGVKLALSLHAPDDETRRRIIPTAHRYSIAEIMEAVRA 273

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +  RR+T EY ML+ +ND    A  L +ILKG+ A +NLIPFNPW G     S +K
Sbjct: 274 YFDRTK-RRVTIEYTMLRDVNDREEQARELARILKGLVAHVNLIPFNPWEGAPVAGSGKK 332

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F+  ++R G    +R  RG+D+ AACGQL
Sbjct: 333 RIQRFAAVLEREGVPVTVRWSRGVDVGAACGQL 365


>gi|289433758|ref|YP_003463630.1| radical SAM family protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170002|emb|CBH26542.1| radical SAM family protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 367

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 226/382 (59%), Gaps = 32/382 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L + G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEEHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  +F  S +  ++V E  S DGT K+L +     +     IETV + ++   ++CV++Q
Sbjct: 57  LTANFVMSTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  K  R+LTA EI+ Q++  +  L D    E+           ++S+
Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240
           +V+MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LA
Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N RRITFEY+MLKG+ND  ++AL
Sbjct: 218 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKTN-RRITFEYIMLKGVNDHKKEAL 276

Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L  +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G D
Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 336

Query: 358 ILAACGQLKSLSKRIPKVPRQE 379
           I AACGQL+  SK+I +V  +E
Sbjct: 337 IDAACGQLR--SKQIKRVGIRE 356


>gi|121533699|ref|ZP_01665526.1| radical SAM enzyme, Cfr family [Thermosinus carboxydivorans Nor1]
 gi|121307690|gb|EAX48605.1| radical SAM enzyme, Cfr family [Thermosinus carboxydivorans Nor1]
          Length = 350

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 130/363 (35%), Positives = 207/363 (57%), Gaps = 26/363 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K ++ G   +E+ + + + G+     + R  QI +WIY RG+  F  M+++  + R LL 
Sbjct: 2   KTNIFGYFAQEISDLIAQYGLE----KYRGRQIAEWIYRRGVSRFADMTNLPLKKRDLLA 57

Query: 66  QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++F+I    ++  + S DG T K+LL+F          +ETV +      +LCVS+QVGC
Sbjct: 58  ENFTIDTVYVMAAQHSADGKTSKFLLKFT-----DGAAVETVLMRHSYGNSLCVSTQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +  Q + RNL+  EIL Q +   +LL               S   ++++IV+
Sbjct: 113 GMGCIFCASTLQGVARNLSGGEILAQAIYVNNLL--------------LSAQTRLNSIVI 158

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG GEPL N+DNV + + +  +   L+ S R ITLST G VP + ++  E + + LA+SL
Sbjct: 159 MGSGEPLANYDNVLRFIRLCHEPYCLNLSYRSITLSTCGLVPEMRKLAAEGLPITLAVSL 218

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N+LR+ ++PINR+YP+E +++A  +Y   +  RR+T+EY ++KG+ND    A  L 
Sbjct: 219 HAPNNELRSQIMPINRRYPIEEVVEAADYYAA-TTGRRVTYEYTLIKGVNDGLEQAYELA 277

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L G  A +NLI  N  P    LC D+K I  F + + R   ++ +R   G DI AACG
Sbjct: 278 RLLAGRLANVNLIAVNAVPERGLLCPDEKQIAAFEQTLLRQNINTTVRRKMGADIQAACG 337

Query: 364 QLK 366
           QL+
Sbjct: 338 QLR 340


>gi|251770958|gb|EES51543.1| radical SAM family protein [Leptospirillum ferrodiazotrophum]
          Length = 357

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 142/343 (41%), Positives = 188/343 (54%), Gaps = 19/343 (5%)

Query: 30  HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ-HFSIIYPEIVDEKISCDGTRKW 88
           H   R  Q+  W+Y R   D + MS+I   VR LL+    S+  P ++    S DGT K 
Sbjct: 20  HPAYRGRQVAHWVYQRLTTDPRKMSNIPPGVRDLLSSGTLSLDLPTVLSTAQSLDGTVKM 79

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
            LR       GPV IE+V IP K + TLC+S+Q GC + C FC T +  L RNL+  EIL
Sbjct: 80  ALRLQ----DGPV-IESVLIPRKGQWTLCLSTQAGCGIGCRFCRTASMGLTRNLSTAEIL 134

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q LLA   +   P  E             I +IV MGMGEPL N + +  ++   +   
Sbjct: 135 SQWLLAARFVETLPPGES-----------HIDHIVFMGMGEPLANLEALIPAIRSLTHPD 183

Query: 209 GLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           G   S RRIT+STSG VP I  +GE   GV LAISL A  + LR  ++P+ R Y +E ++
Sbjct: 184 GAGLSPRRITVSTSGLVPRIDTLGEANTGVRLAISLCAPDDALRREIMPVGRIYSIEEIL 243

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
            ACR +P L N  RITFEYV+L G+NDSP  A  L ++L    +K+NLIPFNP+PG  Y 
Sbjct: 244 AACRRFP-LRNRDRITFEYVLLAGVNDSPLQARQLGRLLAPFRSKVNLIPFNPFPGSPYH 302

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
                 +  F E +     ++ +R   G D+LAACGQL   S+
Sbjct: 303 RPTDSSVAAFQEVLAGFHITATVRKSMGPDVLAACGQLARESQ 345


>gi|257087248|ref|ZP_05581609.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256995278|gb|EEU82580.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|315026051|gb|EFT37983.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2137]
          Length = 357

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 221/379 (58%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    D  G ++           ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N RR+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIQKTN-RRVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP     +Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|29376559|ref|NP_815713.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecalis V583]
 gi|227520169|ref|ZP_03950218.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104]
 gi|227555397|ref|ZP_03985444.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22]
 gi|229549611|ref|ZP_04438336.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200]
 gi|255972309|ref|ZP_05422895.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255975469|ref|ZP_05426055.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256956502|ref|ZP_05560673.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256961519|ref|ZP_05565690.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256962655|ref|ZP_05566826.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257079424|ref|ZP_05573785.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1]
 gi|257082189|ref|ZP_05576550.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257090325|ref|ZP_05584686.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257416428|ref|ZP_05593422.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257419673|ref|ZP_05596667.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|293382216|ref|ZP_06628158.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712]
 gi|293388635|ref|ZP_06633131.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613]
 gi|294780328|ref|ZP_06745697.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1]
 gi|300860541|ref|ZP_07106628.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD
           Ef11]
 gi|307270284|ref|ZP_07551592.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248]
 gi|307277716|ref|ZP_07558802.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860]
 gi|307287862|ref|ZP_07567895.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109]
 gi|312900861|ref|ZP_07760155.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470]
 gi|312902828|ref|ZP_07762032.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
 gi|312908292|ref|ZP_07767256.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512]
 gi|312951214|ref|ZP_07770116.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102]
 gi|81585123|sp|Q833B6|RLMN_ENTFA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|29344023|gb|AAO81783.1| conserved hypothetical protein TIGR00048 [Enterococcus faecalis
           V583]
 gi|227072382|gb|EEI10345.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104]
 gi|227175440|gb|EEI56412.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22]
 gi|229305276|gb|EEN71272.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200]
 gi|255963327|gb|EET95803.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255968341|gb|EET98963.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256946998|gb|EEU63630.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256952015|gb|EEU68647.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256953151|gb|EEU69783.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256987454|gb|EEU74756.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1]
 gi|256990219|gb|EEU77521.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256999137|gb|EEU85657.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257158256|gb|EEU88216.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|257161501|gb|EEU91461.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|291080400|gb|EFE17764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712]
 gi|291082010|gb|EFE18973.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613]
 gi|294452592|gb|EFG21025.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1]
 gi|300849580|gb|EFK77330.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD
           Ef11]
 gi|306501007|gb|EFM70314.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109]
 gi|306505595|gb|EFM74779.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860]
 gi|306513338|gb|EFM81962.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248]
 gi|310625706|gb|EFQ08989.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512]
 gi|310630748|gb|EFQ14031.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102]
 gi|310633882|gb|EFQ17165.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
 gi|311291960|gb|EFQ70516.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470]
 gi|315031044|gb|EFT42976.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0017]
 gi|315034600|gb|EFT46532.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0027]
 gi|315143477|gb|EFT87493.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2141]
 gi|315149242|gb|EFT93258.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0012]
 gi|315152618|gb|EFT96634.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0031]
 gi|315159454|gb|EFU03471.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0312]
 gi|315164747|gb|EFU08764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1302]
 gi|315167578|gb|EFU11595.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1341]
 gi|315171638|gb|EFU15655.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1342]
 gi|315173222|gb|EFU17239.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1346]
 gi|315575041|gb|EFU87232.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309B]
 gi|315576758|gb|EFU88949.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0630]
 gi|315582467|gb|EFU94658.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309A]
 gi|327535508|gb|AEA94342.1| cfr family radical SAM enzyme [Enterococcus faecalis OG1RF]
 gi|329568816|gb|EGG50616.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TX1467]
          Length = 357

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 221/379 (58%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    D  G ++           ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N RR+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP     +Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|148926804|ref|ZP_01810483.1| hypothetical protein Cj8486_1762 [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145844529|gb|EDK21636.1| hypothetical protein Cj8486_1762 [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 356

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 140/352 (39%), Positives = 200/352 (56%), Gaps = 34/352 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++WIY +   +F  MS++ +++R  L Q+F     + V  + S DG+ K+L   
Sbjct: 23  FRVKQIYQWIYQKYANNFSDMSNLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               + G + IE+V +P K             +R T+CVSSQVGC   CSFC T    L 
Sbjct: 83  ----VDG-LRIESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL+A EI+ Q+L  +                IP   R   NIV MGMGEPL N  NV K
Sbjct: 138 RNLSAGEIVGQILWIKKQNN------------IPYERR--VNIVYMGMGEPLDNLKNVSK 183

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I + + GL+ S RR T+STSG    I  +G+  +GV+LAISLHAV+++LR  L+PIN
Sbjct: 184 AVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y +  ++DA R +P +   +R+ FEY+++ GIND    A  L+K+L GI AK+NLI F
Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           NP  G  Y     ++ + F + +   G +  IR  +GLDI AACGQLK  +K
Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 354


>gi|257870949|ref|ZP_05650602.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           gallinarum EG2]
 gi|257805113|gb|EEV33935.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           gallinarum EG2]
          Length = 360

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 222/368 (60%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ +E L   + +    Q   + RT+Q+W+W+Y + +  F+ M+++ + +   LN
Sbjct: 8   KPSIYGLTKESLSLWMTE----QEEKKFRTNQVWEWLYEKRVATFEEMTNLPKSLVTKLN 63

Query: 66  QHFSIIYP--EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           + F +I P  +IV ++ S DGT K+L + P   +     IETV + ++   ++CV++QVG
Sbjct: 64  ESF-VINPLKQIVLQEAS-DGTVKYLFQLPDNHM-----IETVLMRQEYGMSVCVTTQVG 116

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++L +    +             + G ++S++V
Sbjct: 117 CNIGCTFCASGLLKKQRDLTAGEIVAQIMLVQHYFDEL------------NAGERVSHVV 164

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV + L I +D  GL+   R IT+STSG    I    E  + V LAIS
Sbjct: 165 VMGIGEPFDNYENVMQFLQIINDPKGLAIGARHITVSTSGLAHKIKEFAENGLQVNLAIS 224

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L++A  +Y   +N RRITFEY+ML  +ND P  A  L
Sbjct: 225 LHAPNNEVRTSMMRINRSFPIEKLMEAIDYYLEKTN-RRITFEYIMLDHVNDRPEHARQL 283

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           +++LK     + +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G DI 
Sbjct: 284 VELLKNKRKLSYVNLIPYNPVSEHDQYARSKKEDVLAFYDILKKNGINCVIRKEHGTDID 343

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 344 AACGQLRS 351


>gi|293557268|ref|ZP_06675815.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039]
 gi|291600555|gb|EFF30860.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039]
          Length = 355

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 222/370 (60%), Gaps = 30/370 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+S+ G+  EEL    ++ G      + R +Q+W+W+Y + + +F  M+++S+++   
Sbjct: 1   MEKQSIYGLTNEELINWFIENG----EKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEK 56

Query: 64  LNQHFSIIYP--EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L++HF II P  ++V ++ S DGT K+L   P + +     IETV + ++   ++CV++Q
Sbjct: 57  LSEHF-IINPLKQMVVQEAS-DGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  K  R+LTA EI+ Q+++ +    +             ++G ++S+
Sbjct: 110 VGCNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDE------------RNLGERVSH 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           +V+MG+GEP  N+DNV   L I +D+ GL+   R IT+STSG    I       + V LA
Sbjct: 158 VVVMGIGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +N++R  ++ INR +P+E L++A   Y   +N RRITFEY+ML  +ND P  A 
Sbjct: 218 ISLHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTN-RRITFEYIMLNQVNDRPEHAQ 276

Query: 301 NLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L  +LK     A +NLIP+NP     +Y    + D++ F + +K++G +  IR   G D
Sbjct: 277 QLADLLKDKKKLAYVNLIPYNPVSEHDQYSRCPKADVLRFYDVLKKNGVNCVIRKEHGTD 336

Query: 358 ILAACGQLKS 367
           I AACGQL+S
Sbjct: 337 IDAACGQLRS 346


>gi|301167934|emb|CBW27519.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 356

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 210/370 (56%), Gaps = 23/370 (6%)

Query: 5   KKE-SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           KKE SL  +  EEL E L + G      +    Q++ WI+ R   DF   S++S +++  
Sbjct: 3   KKEVSLYSLTLEELREYLKEQGF----AKFAADQVYNWIFKRYEFDFDKWSNVSGKIKKH 58

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQV 122
             ++     P++V   +S DGTRK+L+      +     +E V IP K+ R TLCVSSQ+
Sbjct: 59  FEENLDTFLPKVVWNGLSKDGTRKFLI-----GMNDSNTVEAVAIPAKNNRLTLCVSSQI 113

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C+FC+TGT  L R+LT  E++ Q L     L      E+++         +++NI
Sbjct: 114 GCAIGCTFCHTGTMGLTRHLTTGEVVGQYLAVTKWLR-----ENVDEEA------RLTNI 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MG GEPL NF+NVK++  +  +  G+   +R+ITLSTSG VP I ++ +   V +AIS
Sbjct: 163 VYMGQGEPLHNFNNVKQATKVFMEEKGIGLGQRKITLSTSGLVPQIEKLQDFPPVNVAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  N++R  L+PIN+ Y L  L +A R  P L   R IT+EY+++  +ND   D   L
Sbjct: 223 LHAAHNNIRTELMPINKAYDLTRLFEAIRKIP-LKAHRWITYEYILIADLNDRVEDLDGL 281

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +L    +K+NLIPFN +P  ++     + I  F + + R GY    RT +G DILAAC
Sbjct: 282 SDLLDKKVSKVNLIPFNEYPESKFKRPSDEKIKWFQDELNRRGYICTTRTTKGTDILAAC 341

Query: 363 GQLKSLSKRI 372
           GQLKS   ++
Sbjct: 342 GQLKSEHDKL 351


>gi|283956169|ref|ZP_06373654.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792323|gb|EFC31107.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 356

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/352 (40%), Positives = 199/352 (56%), Gaps = 34/352 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++WIY +   +F  MS + +++R  L Q+F     + V  + S DG+ K+L   
Sbjct: 23  FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               + G + IE+V +P K             +R T+CVSSQVGC   CSFC T    L 
Sbjct: 83  ----VDG-LRIESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL+A EI+ Q+L  +                IP   R   NIV MGMGEPL N  NV K
Sbjct: 138 RNLSAGEIVGQILWIKKQNN------------IPYERR--VNIVYMGMGEPLDNLKNVSK 183

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I S + GL+ S RR T+STSG    I  +G+  +GV+LAISLHAV+++LR  L+PIN
Sbjct: 184 AVKILSQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y +  ++DA R +P +   +R+ FEY+++ GIND    A  L+K+L GI AK+NLI F
Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           NP  G  Y     ++ + F + +   G +  IR  +GLDI AACGQLK  +K
Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 354


>gi|269837848|ref|YP_003320076.1| radical SAM enzyme, Cfr family [Sphaerobacter thermophilus DSM
           20745]
 gi|269787111|gb|ACZ39254.1| radical SAM enzyme, Cfr family [Sphaerobacter thermophilus DSM
           20745]
          Length = 347

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 142/362 (39%), Positives = 198/362 (54%), Gaps = 26/362 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  +   ELEE L   G+P    R R  QI+ W Y +   D+  M+ + + +R  L   
Sbjct: 2   ALYDLTLAELEERLAADGVP----RYRARQIFHWAYRQLAVDYDAMTVLPKTLRADLATR 57

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             +     V E  + DG T K L R     + G   IETV +    R T+CVS QVGC++
Sbjct: 58  LPLTPLTPVREVQTDDGETIKTLFR----TVDGQ-HIETVLMFYPDRTTVCVSCQVGCAV 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC TG   L RNLTA              G+               GR ++NIVMMG
Sbjct: 113 GCSFCATGMMGLTRNLTA--------------GEMVAQVVAAARRAREAGRTLTNIVMMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEP  N++   + + I  +  G++F  RRIT+STSG VP I R+  E   V LA+SLHA
Sbjct: 159 MGEPFQNYEATMRMVRILHEEEGMNFGARRITVSTSGLVPFIDRLAREPFQVKLAVSLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++DLR+ LVP+NR+YP+  LI ACR Y G    RR+TFEYV++ G+NDS  +A  L ++
Sbjct: 219 PNDDLRSSLVPLNRRYPIGELIAACRRYVG-ETGRRVTFEYVLIDGVNDSDANAEELARL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+   +NLIP NP P   +     + I  F + ++  G  + +R  RG+DI AACGQL
Sbjct: 278 LRGLLCHVNLIPLNPTPAAPFGRPSVERINRFEQILRARGIPATVRYSRGVDISAACGQL 337

Query: 366 KS 367
           ++
Sbjct: 338 RA 339


>gi|257422170|ref|ZP_05599160.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|257163994|gb|EEU93954.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|315157206|gb|EFU01223.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0043]
          Length = 357

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 221/379 (58%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVATFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    D  G ++           ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N RR+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP     +Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|323481183|gb|ADX80622.1| radical SAM superfamily protein [Enterococcus faecalis 62]
          Length = 357

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 220/379 (58%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    D  G ++           ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y    N RR+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIE-KNNRRVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP     +Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|205355727|ref|ZP_03222497.1| hypothetical protein Cj8421_1776 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346504|gb|EDZ33137.1| hypothetical protein Cj8421_1776 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 335

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 140/352 (39%), Positives = 200/352 (56%), Gaps = 34/352 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++WIY +   +F  MS++ +++R  L Q+F     + V  + S DG+ K+L   
Sbjct: 2   FRVKQIYQWIYQKYANNFSDMSNLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 61

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               + G + IE+V +P K             +R T+CVSSQVGC   CSFC T    L 
Sbjct: 62  ----VDG-LRIESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 116

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL+A EI+ Q+L  +                IP   R   NIV MGMGEPL N  NV K
Sbjct: 117 RNLSAGEIVGQILWIKKQNN------------IPYERR--VNIVYMGMGEPLDNLKNVSK 162

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I + + GL+ S RR T+STSG    I  +G+  +GV+LAISLHAV+++LR  L+PIN
Sbjct: 163 AVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 222

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y +  ++DA R +P +   +R+ FEY+++ GIND    A  L+K+L GI AK+NLI F
Sbjct: 223 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 281

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           NP  G  Y     ++ + F + +   G +  IR  +GLDI AACGQLK  +K
Sbjct: 282 NPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 333


>gi|32266677|ref|NP_860709.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           hepaticus ATCC 51449]
 gi|81665730|sp|Q7VGY9|RLMN_HELHP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|32262728|gb|AAP77775.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 369

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 133/351 (37%), Positives = 203/351 (57%), Gaps = 40/351 (11%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWLL 90
            R  QI+ W+Y R   D   M +IS+ +++ + +HF++  IYP  V+  I  DG++K+L 
Sbjct: 28  FRAKQIYHWLYHRYENDAMRMDNISKTMQNYIREHFALSQIYPIRVEHSI--DGSKKYLF 85

Query: 91  R-FPARCIGGPVEIETVYIP-------------EKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
             +   C       E+V I              E  + T+C+SSQ+GC + C+FC+T   
Sbjct: 86  ETYDGHCF------ESVLIQMRDKKLGHKGEVVESEKWTMCLSSQIGCKVGCAFCFTAKG 139

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
             VRNL A EI+ QV++ +            +  + P    K  NIV MGMGEPL N +N
Sbjct: 140 GFVRNLHASEIVEQVVIMKK-----------DNQMAP---HKRVNIVYMGMGEPLDNIEN 185

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILV 255
           V +++ I S+S GLS S RR T+STSG  P I ++G+  +GV LAISLHAV + LR+ L+
Sbjct: 186 VTRAIEILSESEGLSISARRQTISTSGIAPKIKQLGKLNLGVQLAISLHAVDDKLRSQLI 245

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
           P+N+ Y +  ++   R +P +   +++ FEY+M+KG+ND  + A  L+++L GI AK+NL
Sbjct: 246 PMNKAYNISDILTEVRAFP-IDTRKKVMFEYLMIKGVNDDLKSAKKLLQLLNGIKAKVNL 304

Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           I FNP  G  +   +  D+  F++ + + G    IR  RG+DI AACGQL+
Sbjct: 305 ILFNPHEGSTFKRPEINDVRAFADFLIKRGLLCTIRESRGIDISAACGQLR 355


>gi|116871870|ref|YP_848651.1| hypothetical protein lwe0450 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123460725|sp|A0AFT6|RLMN_LISW6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|116740748|emb|CAK19868.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 367

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 225/382 (58%), Gaps = 32/382 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  +F  + +  ++V E  S DGT K+L +     +     IETV + ++   ++CV++Q
Sbjct: 57  LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  K  R+LTA EI+ Q++  +  L D    E+           ++S+
Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240
           +V+MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LA
Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N RRITFEY+MLKG+ND  ++AL
Sbjct: 218 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHKKEAL 276

Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L  +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G D
Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 336

Query: 358 ILAACGQLKSLSKRIPKVPRQE 379
           I AACGQL+  SK+I +V  +E
Sbjct: 337 IDAACGQLR--SKQIKRVGVRE 356


>gi|153951816|ref|YP_001398992.1| radical SAM protein [Campylobacter jejuni subsp. doylei 269.97]
 gi|205829694|sp|A7H662|RLMN_CAMJD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|152939262|gb|ABS44003.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 356

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 140/352 (39%), Positives = 201/352 (57%), Gaps = 34/352 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++WIY +   +F  MS + +++R  L Q+F     + V  + S DG+ K+L   
Sbjct: 23  FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               I G + +E+V +P K             +R T+CVSSQVGC  +CSFC T    L 
Sbjct: 83  ----IDG-LRVESVLLPMKEEKIDTEGKRISHARYTICVSSQVGCKSSCSFCLTAKGGLK 137

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL+A EI+ Q+L  +            +   IP   R   NIV MGMGEPL N  NV K
Sbjct: 138 RNLSAGEIVGQILWIK------------KQNNIPYERR--VNIVYMGMGEPLDNLKNVSK 183

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I + + GL+ S RR T+STSG    I  +G+  +GV+LAISLHAV+++LR  L+PIN
Sbjct: 184 AVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y +  ++DA R +P +   +R+ FEY+++ GIND    A  L+K+L GI AK+NLI F
Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           NP  G  Y     ++ + F + +   G +  IR  +GLDI AACGQLK  +K
Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRESKGLDISAACGQLKERAK 354


>gi|290892377|ref|ZP_06555371.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|290557943|gb|EFD91463.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J2-071]
          Length = 367

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 225/382 (58%), Gaps = 32/382 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  +F  + +  ++V E  S DGT K+L +     +     IETV + ++   ++CV++Q
Sbjct: 57  LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  K  R+LTA EI+ Q++  +  L D    E+           ++S+
Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240
           +V+MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LA
Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N RRITFEY+MLKG+ND  ++AL
Sbjct: 218 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHKKEAL 276

Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L  +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G D
Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 336

Query: 358 ILAACGQLKSLSKRIPKVPRQE 379
           I AACGQL+  SK+I +V  +E
Sbjct: 337 IDAACGQLR--SKQIKRVGVRE 356


>gi|47094708|ref|ZP_00232323.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224500691|ref|ZP_03669040.1| hypothetical protein LmonF1_13881 [Listeria monocytogenes Finland
           1988]
 gi|254900292|ref|ZP_05260216.1| hypothetical protein LmonJ_10775 [Listeria monocytogenes J0161]
 gi|254911154|ref|ZP_05261166.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254935482|ref|ZP_05267179.1| 23S rRNA methyltransferase [Listeria monocytogenes F6900]
 gi|255026212|ref|ZP_05298198.1| hypothetical protein LmonocytFSL_07400 [Listeria monocytogenes FSL
           J2-003]
 gi|47016848|gb|EAL07766.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258608058|gb|EEW20666.1| 23S rRNA methyltransferase [Listeria monocytogenes F6900]
 gi|293589079|gb|EFF97413.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 367

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 224/382 (58%), Gaps = 32/382 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+    L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  +F  + +  ++V E  S DGT K+L +     +     IETV + ++   ++CV++Q
Sbjct: 57  LTANFVMNTLEEQVVQE--SADGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  K  R+LTA EI+ Q++  +  L D    E+           ++S+
Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240
           +V+MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LA
Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N RRITFEY+MLKG+ND  ++AL
Sbjct: 218 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHKKEAL 276

Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L  +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G D
Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 336

Query: 358 ILAACGQLKSLSKRIPKVPRQE 379
           I AACGQL+  SK+I +V  +E
Sbjct: 337 IDAACGQLR--SKQIKRVGVRE 356


>gi|16799559|ref|NP_469827.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
           Clip11262]
 gi|46906726|ref|YP_013115.1| ribosomal RNA large subunit methyltransferase N [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47092541|ref|ZP_00230330.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
           str. 4b H7858]
 gi|217965434|ref|YP_002351112.1| radical SAM enzyme, Cfr family [Listeria monocytogenes HCC23]
 gi|226223105|ref|YP_002757212.1| conserved hypothetical protein, highly similar to B. subtilis YloN
           protein [Listeria monocytogenes Clip81459]
 gi|254824244|ref|ZP_05229245.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|254829423|ref|ZP_05234110.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|254830533|ref|ZP_05235188.1| hypothetical protein Lmon1_04192 [Listeria monocytogenes 10403S]
 gi|254853849|ref|ZP_05243197.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|254933233|ref|ZP_05266592.1| 23S rRNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|254993511|ref|ZP_05275701.1| hypothetical protein LmonocytoFSL_11352 [Listeria monocytogenes FSL
           J2-064]
 gi|255521363|ref|ZP_05388600.1| hypothetical protein LmonocFSL_09075 [Listeria monocytogenes FSL
           J1-175]
 gi|284800757|ref|YP_003412622.1| hypothetical protein LM5578_0505 [Listeria monocytogenes 08-5578]
 gi|284993943|ref|YP_003415711.1| hypothetical protein LM5923_0504 [Listeria monocytogenes 08-5923]
 gi|81403675|sp|Q723G9|RLMN_LISMF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81595444|sp|Q92EH6|RLMN_LISIN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807187|sp|B8DCJ5|RLMN_LISMH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|259491990|sp|C1KZZ3|RLMN_LISMC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|16412924|emb|CAC95716.1| lin0484 [Listeria innocua Clip11262]
 gi|46879991|gb|AAT03292.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019133|gb|EAL09877.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
           str. 4b H7858]
 gi|217334704|gb|ACK40498.1| radical SAM enzyme, Cfr family [Listeria monocytogenes HCC23]
 gi|225875567|emb|CAS04270.1| Putative conserved hypothetical protein, highly similar to B.
           subtilis YloN protein [Listeria monocytogenes serotype
           4b str. CLIP 80459]
 gi|258601839|gb|EEW15164.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258607233|gb|EEW19841.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|284056319|gb|ADB67260.1| hypothetical protein LM5578_0505 [Listeria monocytogenes 08-5578]
 gi|284059410|gb|ADB70349.1| hypothetical protein LM5923_0504 [Listeria monocytogenes 08-5923]
 gi|293584792|gb|EFF96824.1| 23S rRNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|293593478|gb|EFG01239.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|307570010|emb|CAR83189.1| conserved hypothetical protein [Listeria monocytogenes L99]
 gi|328467548|gb|EGF38610.1| ribosomal RNA large subunit methyltransferase N [Listeria
           monocytogenes 1816]
 gi|332310902|gb|EGJ23997.1| Ribosomal RNA large subunit methyltransferase N [Listeria
           monocytogenes str. Scott A]
          Length = 367

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 225/382 (58%), Gaps = 32/382 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  +F  + +  ++V E  S DGT K+L +     +     IETV + ++   ++CV++Q
Sbjct: 57  LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  K  R+LTA EI+ Q++  +  L D    E+           ++S+
Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240
           +V+MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LA
Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N RRITFEY+MLKG+ND  ++AL
Sbjct: 218 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHKKEAL 276

Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L  +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G D
Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 336

Query: 358 ILAACGQLKSLSKRIPKVPRQE 379
           I AACGQL+  SK+I +V  +E
Sbjct: 337 IDAACGQLR--SKQIKRVGVRE 356


>gi|305432592|ref|ZP_07401753.1| cfr family radical SAM enzyme [Campylobacter coli JV20]
 gi|304444303|gb|EFM36955.1| cfr family radical SAM enzyme [Campylobacter coli JV20]
          Length = 356

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/379 (38%), Positives = 210/379 (55%), Gaps = 42/379 (11%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++  + EELEE +  +         R  QI++WIY +   +F  MS + +++R  L Q 
Sbjct: 6   NILDFLPEELEEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQT 57

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-------------SRG 114
           +     + V  + S DG+ K+L       I G + IE+V +P K             +R 
Sbjct: 58  YHFSPLKCVKNEQSKDGSIKYLFEL----IDG-LRIESVLLPMKEEQFDEEGKRISHTRY 112

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           T+CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +                IP 
Sbjct: 113 TICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNN------------IPY 160

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE- 233
             R   NIV MGMGEPL N  NV K++ I S + GL+ S RR T+STSG    I  +GE 
Sbjct: 161 ERR--VNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGEM 218

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
            +GV+LAISLHAV+++LR  L+PIN+ Y +  ++DA R +P +   +R+ FEY+++ GIN
Sbjct: 219 NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVRAFP-IDQRKRVMFEYLLIDGIN 277

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR  
Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRES 337

Query: 354 RGLDILAACGQLKSLSKRI 372
           +GLDI AACGQLK  +K +
Sbjct: 338 KGLDISAACGQLKERAKEL 356


>gi|256619523|ref|ZP_05476369.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|307275985|ref|ZP_07557118.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2134]
 gi|256599050|gb|EEU18226.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|306507315|gb|EFM76452.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2134]
 gi|315146175|gb|EFT90191.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4244]
          Length = 357

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 221/379 (58%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    D  G ++           ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYVNVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N RR+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP     +Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|313899948|ref|ZP_07833450.1| 23S rRNA m2A2503 methyltransferase [Clostridium sp. HGF2]
 gi|312955256|gb|EFR36922.1| 23S rRNA m2A2503 methyltransferase [Clostridium sp. HGF2]
          Length = 351

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/344 (37%), Positives = 194/344 (56%), Gaps = 21/344 (6%)

Query: 24  IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD 83
           + + Q   + R  QI++W+Y +       MSD+S++ R  L Q FS+   ++ D++++ D
Sbjct: 15  MALEQGWKKFRAHQIFQWLYRKRAVSIDDMSDLSKDTRETLKQQFSLTPLKLRDKQVASD 74

Query: 84  GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
           GT K+L       +     IE+V +      ++CV+SQVGC++ C+FC +G  K  RNLT
Sbjct: 75  GTTKYLFALEDGSL-----IESVLMQFDYGKSICVTSQVGCNMACAFCASGLTKKKRNLT 129

Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
           + E++ QVL  +    D    ED           ++S+IV+MG GEP  N+++V   LS 
Sbjct: 130 SGEMVAQVLYVQR---DLDKQED-----------RLSHIVVMGTGEPFDNYEHVMNFLST 175

Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYP 262
            +   GL    R IT+ST G VP I    +E     LAISLHA +N+LR+ L+P+NR YP
Sbjct: 176 VNHDRGLGIGARHITISTCGVVPKIYEFAKEHTQYNLAISLHAPNNELRDRLMPVNRAYP 235

Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322
           LE L++A ++Y    N RR+TFEY++L+G+ND       L K+LKG+ A +NLIP+N   
Sbjct: 236 LEELMEAIQYY-ARENNRRLTFEYILLRGVNDQKEHVAQLAKLLKGLNAYVNLIPYNAVD 294

Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
              +   D    + F + + + G    IR   G DI AACGQL+
Sbjct: 295 ENGFQGVDHAHAMVFYDALMKQGVRCTIRKEHGADIDAACGQLR 338


>gi|16802525|ref|NP_464010.1| ribosomal RNA large subunit methyltransferase N [Listeria
           monocytogenes EGD-e]
 gi|224502216|ref|ZP_03670523.1| hypothetical protein LmonFR_06797 [Listeria monocytogenes FSL
           R2-561]
 gi|81592923|sp|Q8Y9P2|RLMN_LISMO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|16409858|emb|CAC98561.1| lmo0482 [Listeria monocytogenes EGD-e]
          Length = 367

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 224/382 (58%), Gaps = 32/382 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+    L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  +F  + +  ++V E  S DGT K+L +     +     IETV + ++   ++CV++Q
Sbjct: 57  LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  K  R+LTA EI+ Q++  +  L D    E+           ++S+
Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240
           +V+MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LA
Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N RRITFEY+MLKG+ND  ++AL
Sbjct: 218 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHKKEAL 276

Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L  +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G D
Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 336

Query: 358 ILAACGQLKSLSKRIPKVPRQE 379
           I AACGQL+  SK+I +V  +E
Sbjct: 337 IDAACGQLR--SKQIKRVGVRE 356


>gi|289551002|ref|YP_003471906.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180534|gb|ADC87779.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
           lugdunensis HKU09-01]
          Length = 364

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 209/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
             K+S+  +  +E+++ L++ G      + R  QI++W+Y + +  F+ M+++S+++R L
Sbjct: 16  FDKQSIYSLRFDEMQQWLVEQG----QQKFRAKQIYEWLYQKRVNSFEEMTNLSKDLRKL 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  HF +     V ++ S DGT K+L       +     IETV +      ++CV++QVG
Sbjct: 72  LADHFVMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L               +   ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG VP I    +E I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIVPRIYDFADEGIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +D+R+ L+PINR Y ++ L++A R+Y   +N RRITFEY +  G+ND    A  L
Sbjct: 233 LHAAKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTN-RRITFEYGLFGGVNDQLEHAREL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKNLNCHVNLIPVNHVPERNYVKTSKDDIFKFEKELKRLGVNATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|154147902|ref|YP_001407255.1| radical SAM protein [Campylobacter hominis ATCC BAA-381]
 gi|205829692|sp|A7I414|RLMN_CAMHC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|153803911|gb|ABS50918.1| radical SAM enzyme, Cfr family [Campylobacter hominis ATCC BAA-381]
          Length = 358

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 203/349 (58%), Gaps = 34/349 (9%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           + R  QI++WIY + + DF  M ++  ++R  L   F I    +   + S DG++K+L  
Sbjct: 19  KFRAKQIYEWIYHKNVDDFLQMKNLPLQMREDLANEFYIGGLNVSKCEQSVDGSKKYLFE 78

Query: 92  FPARCIGGPVEIETVYIPEKS-------------RGTLCVSSQVGCSLTCSFCYTGTQKL 138
                  G   IE+V +P K              R T+CVSSQVGC + C+FC T     
Sbjct: 79  LK----DGKT-IESVLLPMKDEITDENGEILRHKRYTICVSSQVGCKIGCAFCLTAKGGF 133

Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198
           VRNL+A EI+ Q+ L + +              IP   R+I N+V MGMGEPL N +NV 
Sbjct: 134 VRNLSAGEIVEQIRLIKKI------------NKIP-YERRI-NVVYMGMGEPLNNLENVA 179

Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPI 257
           K++ I   + GL+ S RR T+STSG    I ++GE  +GV+LAISLHAV+++LR  L+PI
Sbjct: 180 KAIKILIQNEGLAISPRRQTISTSGLSSQIKKLGEMNLGVLLAISLHAVNDELREKLMPI 239

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
           NR Y +  ++ A R +P +   +R+ FEY+++ G+NDS  DA  L+++L GI AK+NLI 
Sbjct: 240 NRAYNIASIMQAVREFP-IDLRKRVMFEYLVMDGVNDSINDAKTLVRLLNGIKAKVNLIY 298

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           FNP  G ++    +++++ F + +   G +  IR  +GLDI AACGQL+
Sbjct: 299 FNPHIGSKFHRPSEENMIKFQDYLSVHGITCTIRQSKGLDISAACGQLR 347


>gi|269120621|ref|YP_003308798.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386]
 gi|268614499|gb|ACZ08867.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386]
          Length = 357

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 209/367 (56%), Gaps = 30/367 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K ++ G+  + LE+ LLK+   + +V+    QI+ W++ +   +F   S+IS+E R++
Sbjct: 11  IEKLNISGLKYDTLEKELLKLNFKKYNVK----QIFNWLHNKMEDNFDNFSNISKENRNI 66

Query: 64  LNQHFSIIYPEI--VDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           L+++F I  PEI  +D  IS  D T K+L +     + G V IE+V I  K+R TLCVSS
Sbjct: 67  LSKNFFI--PEITLLDHLISENDNTEKFLFK-----LQGNVLIESVLIGHKNRYTLCVSS 119

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC+L C FC T T K  +NL   EIL+Q    +  L                 G K+ 
Sbjct: 120 QAGCALGCEFCATATMKFEKNLDISEILMQFYYVQKYLN--------------QKGNKLD 165

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           N+V MGMGEP  NFDNV  S+ I +   G + SKR  T+STSG VP I +  + +  V L
Sbjct: 166 NVVFMGMGEPFLNFDNVMDSIDILNSIDGQNCSKRNFTVSTSGLVPYIEKFTDLDSQVNL 225

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+V+++ R+ ++P+N+KYPL+ L  +   Y   +  +RI+FEY+++   N S  DA
Sbjct: 226 AVSLHSVNDEYRSKIMPVNKKYPLKDLKKSLLAYQKKT-KKRISFEYILIDDFNCSKNDA 284

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L K L+     +NLIP+NP  G  Y    +     F   + ++  ++ +R  +G DI 
Sbjct: 285 FELTKFLREFSCLVNLIPYNPVAGKSYATPSKTRQQEFYRILLKNNINATLRETKGQDIA 344

Query: 360 AACGQLK 366
           AACGQLK
Sbjct: 345 AACGQLK 351


>gi|315161444|gb|EFU05461.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0645]
          Length = 357

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 220/379 (58%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    D  G ++           ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y    N RR+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMVAIDEYIE-KNNRRVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP     +Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|86150562|ref|ZP_01068786.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86154131|ref|ZP_01072330.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88597741|ref|ZP_01100974.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|85839014|gb|EAQ56279.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85842371|gb|EAQ59587.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88190045|gb|EAQ94021.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|284926904|gb|ADC29256.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315929674|gb|EFV08851.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 356

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 140/352 (39%), Positives = 199/352 (56%), Gaps = 34/352 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++WIY +   +F  MS + +++R  L Q+F     + V  + S DG+ K+L   
Sbjct: 23  FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               I G + +E+V +P K             +R T+CVSSQVGC   CSFC T    L 
Sbjct: 83  ----IDG-LRVESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL+A EI+ Q+L  +                IP   R   NIV MGMGEPL N  NV K
Sbjct: 138 RNLSAGEIVGQILWIKKQNN------------IPYERR--VNIVYMGMGEPLDNLKNVSK 183

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I + + GL+ S RR T+STSG    I  +G+  +GV+LAISLHAV+++LR  L+PIN
Sbjct: 184 AVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y +  ++DA R +P +   +R+ FEY+++ GIND    A  L+K+L GI AK+NLI F
Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           NP  G  Y     ++ + F + +   G +  IR  +GLDI AACGQLK  +K
Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 354


>gi|256853566|ref|ZP_05558931.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecalis T8]
 gi|256710509|gb|EEU25552.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecalis T8]
          Length = 357

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 222/379 (58%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ +++  +    D  G ++           ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAKIMWVQHYF-DERGLDE-----------RVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYVNVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R +++ INR +P+E L+ A   Y   +N RR+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTLIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP     +Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|57236899|ref|YP_179852.1| radical SAM protein [Campylobacter jejuni RM1221]
 gi|81557377|sp|Q5HS83|RLMN_CAMJR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|57165703|gb|AAW34482.1| radical SAM enzyme, Cfr family [Campylobacter jejuni RM1221]
 gi|315059159|gb|ADT73488.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 356

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 140/352 (39%), Positives = 201/352 (57%), Gaps = 34/352 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++WIY +   +F  MS + +++R  L Q+F     + V  + S DG+ K+L   
Sbjct: 23  FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               + G + IE+V +P K             +R T+CVSSQVGC   CSFC T    L 
Sbjct: 83  ----VDG-LRIESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL+A EI+ Q+L  +    + P              R+I NIV MGMGEPL N  NV K
Sbjct: 138 RNLSAGEIVGQILWIKKQ-NNIP------------YERRI-NIVYMGMGEPLDNLKNVSK 183

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I + + GL+ S RR T+STSG    I  +G+  +GV+LAISLHAV+++LR  L+PIN
Sbjct: 184 AVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y +  ++DA R +P +   +R+ FEY+++ GIND    A  L+K+L GI AK+NLI F
Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           NP  G  Y     ++ + F + +   G +  IR  +GLDI AACGQLK  +K
Sbjct: 303 NPHEGGLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 354


>gi|86152381|ref|ZP_01070591.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315125097|ref|YP_004067101.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85840678|gb|EAQ57930.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018819|gb|ADT66912.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 356

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 140/352 (39%), Positives = 201/352 (57%), Gaps = 34/352 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++WIY +   +F  MS + +++R  L Q+F     + V  + S DG+ K+L   
Sbjct: 23  FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               I G + +E+V +P K             +R T+CVSSQVGC   CSFC T    L 
Sbjct: 83  ----IDG-LRVESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL+A EI+ Q+L  +    + P              R+I NIV MGMGEPL N  NV K
Sbjct: 138 RNLSAGEIVGQILWIKKQ-NNIP------------YERRI-NIVYMGMGEPLDNLKNVSK 183

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I + + GL+ S RR T+STSG    I  +G+  +GV+LAISLHAV+++LR  L+PIN
Sbjct: 184 AVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y +  ++DA R +P +   +R+ FEY+++ GIND    A  L+K+L GI AK+NLI F
Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           NP  G  Y     ++ + F + +   G +  IR  +GLDI AACGQLK  +K
Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRESKGLDISAACGQLKERAK 354


>gi|160915438|ref|ZP_02077649.1| hypothetical protein EUBDOL_01446 [Eubacterium dolichum DSM 3991]
 gi|158432558|gb|EDP10847.1| hypothetical protein EUBDOL_01446 [Eubacterium dolichum DSM 3991]
          Length = 347

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/361 (37%), Positives = 202/361 (55%), Gaps = 25/361 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +SL     +E+ E  L  G      + R  QI++W+Y + +     MSD+S E R +L++
Sbjct: 2   KSLYDFNYDEMGEMALAHGWK----KFRGHQIFQWLYRKRVASIDEMSDLSLETRRVLSE 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           ++ +   E+ D+++S DGT K+L       +     IE+V +      ++CV+SQVGC++
Sbjct: 58  NYELTDLELRDKQVSSDGTTKYLFALKDGSL-----IESVLMQFDYGKSICVTSQVGCNM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +G  K  R+LT+ E++ QVL  +  L               +   ++S+IV+MG
Sbjct: 113 ACAFCASGLTKKKRDLTSGEMVSQVLYVQRDL--------------DAQKERLSHIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+D+V   L   +   GL    R IT+ST G VP I    +E     LAISLHA
Sbjct: 159 TGEPFDNYDHVMNFLRTVNHDRGLGIGARHITISTCGVVPRIYDFSKEHTQYNLAISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            SN+LRN L+PIN+ YPLE L+ A R+Y    N RR+TFEY++LKG+ND  +    L K+
Sbjct: 219 PSNELRNQLMPINKAYPLEELMQAIRYYTS-ENNRRLTFEYILLKGVNDGMKQVNELAKL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+ A +NLIP+N      +L    ++ + F + + + G    IR   G DI AACGQL
Sbjct: 278 LKGLNAYVNLIPYNAVDENGFLGVKYEEAMVFYDALMKRGIRCTIRKEHGADIDAACGQL 337

Query: 366 K 366
           +
Sbjct: 338 R 338


>gi|300765131|ref|ZP_07075117.1| cfr family radical SAM enzyme [Listeria monocytogenes FSL N1-017]
 gi|300514102|gb|EFK41163.1| cfr family radical SAM enzyme [Listeria monocytogenes FSL N1-017]
          Length = 367

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 225/382 (58%), Gaps = 32/382 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  +F  + +  ++V E  S DGT K+L +     +     IETV + ++   ++CV++Q
Sbjct: 57  LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  K  R+LTA EI+ Q++  +  L D    E+           ++S+
Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240
           +V+MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LA
Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N RRITFEY+MLKG+ND  ++AL
Sbjct: 218 ISLHAPNNELRMSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHKKEAL 276

Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L  +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G D
Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 336

Query: 358 ILAACGQLKSLSKRIPKVPRQE 379
           I AACGQL+  SK+I +V  +E
Sbjct: 337 IDAACGQLR--SKQIKRVGVRE 356


>gi|170757229|ref|YP_001782049.1| radical SAM protein [Clostridium botulinum B1 str. Okra]
 gi|205829641|sp|B1IIL7|RLMN_CLOBK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|169122441|gb|ACA46277.1| radical SAM enzyme, Cfr family [Clostridium botulinum B1 str. Okra]
          Length = 342

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 205/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+++    EEL+E L    I +     R  Q++ WIY + I DF  M +I  + ++LL+ 
Sbjct: 2   ENILDFTLEELKEWL----ISKEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57

Query: 67  HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  P++V + +S D  T K+L  +    I     IE+V +  K   ++CVS+QVGC 
Sbjct: 58  NFYIGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    ++RNLT+ EIL Q++ A+                   +G +ISN+V+M
Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQ-----------------KEIGERISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL NF+NV K L + +    L+  +R ITLST G VP I  + ++   + LAISLH
Sbjct: 156 GSGEPLDNFENVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  + LR  ++PI  KY ++ L++AC +Y   +N RRITFEY ++KG NDS ++A  L  
Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKKLST 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG    +NLIP N      Y  S  K+I +F   +K +G  + IR   G DI AACGQ
Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|295135350|ref|YP_003586026.1| radical SAM superfamily protein, UPF0063 [Zunongwangia profunda
           SM-A87]
 gi|294983365|gb|ADF53830.1| radical SAM superfamily protein, UPF0063 [Zunongwangia profunda
           SM-A87]
          Length = 348

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 214/367 (58%), Gaps = 26/367 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK+ +  + +++L+E  ++ G        R SQ+++W++ +G  DF  M++IS++ R +L
Sbjct: 4   KKKDIRALTKKQLQEFFVEHGDKS----FRGSQVYEWLWSKGAHDFDEMTNISKQTRAML 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            ++F I +  +   + S DGT K  ++     +   + +E+V IP  +R T CVSSQVGC
Sbjct: 60  AENFVINHIRVDQMQRSSDGTIKNAVK-----LHDNLTVESVLIPTPTRTTACVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C FC T   K +RNL  +EI  QV+              I+        R +SNIV 
Sbjct: 115 SLDCQFCATARLKRMRNLNPDEIYDQVVA-------------IDNESRLYFDRPLSNIVF 161

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAIS 242
           MGMGEPL N++NV K++   +   GL  S +RIT+STSG VP + +    +E  + LA+S
Sbjct: 162 MGMGEPLMNYNNVMKAVEKITSDEGLGMSAKRITISTSG-VPKMIKKLADDEAKIKLAVS 220

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++++R  ++P N  +PLE L +A  ++   + +R IT+EY++ K +ND+ +DA+ L
Sbjct: 221 LHAATDEVRTRIMPFNETFPLEDLREALEYWYSKTKSR-ITYEYIVWKDVNDTRKDAMAL 279

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           ++  K +P K+NLI +NP    ++  +  +    + + ++++G +  +R  RG DI AAC
Sbjct: 280 VRFCKFVPCKVNLIEYNPIDDGDFQQASSQATAMYQQLLEQNGITVTVRRSRGKDIDAAC 339

Query: 363 GQLKSLS 369
           GQL + S
Sbjct: 340 GQLANKS 346


>gi|57504577|ref|ZP_00370689.1| radical SAM enzyme, Cfr family [Campylobacter coli RM2228]
 gi|57019472|gb|EAL56166.1| radical SAM enzyme, Cfr family [Campylobacter coli RM2228]
          Length = 356

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 146/379 (38%), Positives = 211/379 (55%), Gaps = 42/379 (11%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++  + EELEE +  +         R  QI++WIY +   +F  MS + +++R  L Q 
Sbjct: 6   NILDFLPEELEEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQT 57

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-------------SRG 114
           +     + V  + S DG+ K+L       I G + IE+V +P K             +R 
Sbjct: 58  YHFSPLKCVKNEQSKDGSIKYLFEL----IDG-LRIESVLLPMKEEQFDEEGKRISHTRY 112

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           ++CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +            +   IP 
Sbjct: 113 SICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIK------------KQNNIPY 160

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE- 233
             R   NIV MGMGEPL N  NV K++ I S + GL+ S RR T+STSG    I  +GE 
Sbjct: 161 ERR--VNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGEM 218

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
            +GV+LAISLHAV+++LR  L+PIN+ Y +  ++DA R +P +   +R+ FEY+++ GIN
Sbjct: 219 NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVRAFP-IDQRKRVMFEYLLIDGIN 277

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR  
Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRES 337

Query: 354 RGLDILAACGQLKSLSKRI 372
           +GLDI AACGQLK  +K +
Sbjct: 338 KGLDISAACGQLKERAKEL 356


>gi|187778899|ref|ZP_02995372.1| hypothetical protein CLOSPO_02494 [Clostridium sporogenes ATCC
           15579]
 gi|187772524|gb|EDU36326.1| hypothetical protein CLOSPO_02494 [Clostridium sporogenes ATCC
           15579]
          Length = 348

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 206/365 (56%), Gaps = 29/365 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K E+++ +  EEL+E L    + +     R  QI+ WIY + I DF  M +I ++ ++L
Sbjct: 5   VKMENILDLTLEELKEWL----VSKEEKAFRAKQIFNWIYDKLIFDFNNMKNIPEKTKNL 60

Query: 64  LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L  +F I  P++V + IS D  T K+L  +    I     IE+V +  K   ++CVS+QV
Sbjct: 61  LYDNFYIGVPKVVKKLISQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQV 115

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    ++RNLT+ EIL Q++ A+                   +G +ISN+
Sbjct: 116 GCRMGCKFCASTLDGVIRNLTSGEILSQIMAAQ-----------------KEIGERISNV 158

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL NF NV K L   +    L+  +R ITLST G VP I  + ++   + LAI
Sbjct: 159 VLMGSGEPLDNFGNVTKFLDSVTSENTLNIGQRHITLSTCGIVPKIKELADKNYNITLAI 218

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+  + LR  ++PI  KY ++ L++AC +Y   +N RRITFEY ++KG NDS ++A  
Sbjct: 219 SLHSPEDLLRKEMMPIANKYSIKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKE 277

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +L+G    +NLIP N      Y  S  K+I +F   +K +G  + IR   G DI AA
Sbjct: 278 LSSVLRGKLCHVNLIPVNEIKENSYEKSTSKNIESFGNILKENGIETTIRREMGADINAA 337

Query: 362 CGQLK 366
           CGQL+
Sbjct: 338 CGQLR 342


>gi|300726533|ref|ZP_07059979.1| radical SAM enzyme, Cfr family [Prevotella bryantii B14]
 gi|299776261|gb|EFI72825.1| radical SAM enzyme, Cfr family [Prevotella bryantii B14]
          Length = 349

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 139/376 (36%), Positives = 211/376 (56%), Gaps = 30/376 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L+K+SL+G+  +EL++    +G+P         QI KW+Y   ++    M+++S+  R  
Sbjct: 3   LEKKSLLGLTLDELKDVAKSLGMPA----FTGGQIAKWLYEYHVKSIDEMTNLSKANRQK 58

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L + ++I   E +D + S DGT K+L  FP     G   +ETV+IP++ R TLCVSSQVG
Sbjct: 59  LEEQYTIGCAEAIDAQHSVDGTIKYL--FPT--ANGKF-VETVFIPDEDRATLCVSSQVG 113

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    +L+A +IL Q+                    +P V  K++NIV
Sbjct: 114 CKMNCLFCQTGKQGFEGSLSAADILNQIY------------------SLPEVD-KLTNIV 154

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MG GEP+ N DNV ++  I + S G ++S +RIT+S+ G    + R  EE    +AIS+
Sbjct: 155 FMGQGEPMDNLDNVLRATDILTASYGWAWSPKRITVSSVGVRNKLKRFLEESQCHVAISM 214

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+   + R  L+P  R   +E ++D  R+Y   S+ RR+TFEY++  G+NDS   A  +I
Sbjct: 215 HSPIPEQRAELMPAQRGMSIEEVVDLLRNYD-FSHQRRLTFEYIVFGGVNDSTTHAREII 273

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKG+  +INLI F+  P      +D+K +  F + +   G  + IR  RG DI AACG
Sbjct: 274 KLLKGLDCRINLIRFHQIPEVALHGADEKTMENFRDYLTNHGIHTTIRASRGQDIFAACG 333

Query: 364 QLKSLSKRIPKVPRQE 379
            L S SK+I K+   +
Sbjct: 334 LL-STSKKIGKIRHDQ 348


>gi|307244457|ref|ZP_07526566.1| 23S rRNA m2A2503 methyltransferase [Peptostreptococcus stomatis DSM
           17678]
 gi|306492150|gb|EFM64194.1| 23S rRNA m2A2503 methyltransferase [Peptostreptococcus stomatis DSM
           17678]
          Length = 345

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 147/368 (39%), Positives = 213/368 (57%), Gaps = 35/368 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +  EEL++ L++IG      + R SQI+ WIY R IRDF  M++I + +R  L +H 
Sbjct: 8   LKNLTEEELKDFLVEIG----EKKFRGSQIYSWIY-RNIRDFDEMNNIPKSLRTKLQEHA 62

Query: 69  SIIYPEI---VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            I   E    +D KI  DGT+K+L R     I     IETV +   +R T+CVS+QVGC 
Sbjct: 63  VIGNIEKDLRLDSKI--DGTKKYLFRLNDGNI-----IETVAMDYDTRLTVCVSNQVGCR 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    L RNL A EIL Q++                  V   +G+++SNIVMM
Sbjct: 116 MGCRFCASTIDGLSRNLEAWEILDQII-----------------KVQEDLGKRVSNIVMM 158

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           G GEPL N++N  + L + ++  GL+   R ITLST G V  I  + + EI + LAISLH
Sbjct: 159 GSGEPLDNYENSIRFLKLVNEKNGLNIGNRHITLSTCGIVDRIRDLADLEIPINLAISLH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  ++ R  ++P+  KY +E +I+AC +Y G +N RRITFEY ++KG+NDS ++A  ++K
Sbjct: 219 SPFDEERQKIMPVANKYKVEQIIEACHYYIGKTN-RRITFEYSLIKGVNDSKKEAERIVK 277

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+   +NLIP NP    ++   D   I  F   ++++     IR   G DI  ACGQ
Sbjct: 278 LLKGMLCHVNLIPINPIEERDFEKPDILYINKFKAYLEKNNIPVTIRNSMGADISGACGQ 337

Query: 365 L-KSLSKR 371
           L +S+SKR
Sbjct: 338 LRRSVSKR 345


>gi|148380460|ref|YP_001255001.1| radical SAM enzyme, Cfr family [Clostridium botulinum A str. ATCC
           3502]
 gi|153932990|ref|YP_001384683.1| radical SAM protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937048|ref|YP_001388204.1| radical SAM protein [Clostridium botulinum A str. Hall]
 gi|226949859|ref|YP_002804950.1| radical SAM enzyme, Cfr family [Clostridium botulinum A2 str.
           Kyoto]
 gi|205829625|sp|A7FW72|RLMN_CLOB1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829626|sp|A5I4T4|RLMN_CLOBH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|148289944|emb|CAL84057.1| radical SAM superfamily protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152929034|gb|ABS34534.1| radical SAM enzyme, Cfr family [Clostridium botulinum A str. ATCC
           19397]
 gi|152932962|gb|ABS38461.1| radical SAM enzyme, Cfr family [Clostridium botulinum A str. Hall]
 gi|226842641|gb|ACO85307.1| radical SAM enzyme, Cfr family [Clostridium botulinum A2 str.
           Kyoto]
          Length = 342

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 205/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+++    EEL+E L    I +     R  Q++ WIY + I DF  M +I  + ++LL+ 
Sbjct: 2   ENILDFTLEELKEWL----ISKEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57

Query: 67  HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F +  P++V + +S D  T K+L  +    I     IE+V +  K   ++CVS+QVGC 
Sbjct: 58  NFYVGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    ++RNLT+ EIL Q++ A+                   +G +ISN+V+M
Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQ-----------------KEIGERISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL NF+NV K L + +    L+  +R ITLST G VP I  + ++   + LAISLH
Sbjct: 156 GSGEPLDNFENVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  + LR  ++PI  KY ++ L++AC +Y   +N RRITFEY ++KG NDS ++A  L  
Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKKLST 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG    +NLIP N      Y  S  K+I +F   +K +G  + IR   G DI AACGQ
Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|313203119|ref|YP_004041776.1| 23S rRNA m(2)a-2503 methyltransferase [Paludibacter propionicigenes
           WB4]
 gi|312442435|gb|ADQ78791.1| 23S rRNA m(2)A-2503 methyltransferase [Paludibacter propionicigenes
           WB4]
          Length = 350

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 200/362 (55%), Gaps = 31/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L G+   +L+  +L +G+P        SQ+  W+Y + + D   M+++S++ R  L Q
Sbjct: 7   KNLFGLTLPQLKAEVLALGLPA----FTASQLADWMYKKRVTDIGSMTNLSKQAREKLQQ 62

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQVGCS 125
            +S+     V  + S DGT+K+L  +P R    P + IE  YIP+K R TLCVS+Q+GC 
Sbjct: 63  AYSLHLVPSVSVQTSTDGTKKYL--YPTR----PQKFIEAAYIPDKDRATLCVSTQIGCK 116

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLT  EIL Q+      L +F                K++NIV M
Sbjct: 117 MGCLFCMTGKQGFQGNLTTGEILNQM----QSLPEF---------------DKLTNIVYM 157

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N   V  S+ + +   G  +S +RIT+ST G +P +    E     LA+SLH+
Sbjct: 158 GMGEPLDNVQAVMDSIEVMTSPWGYDWSPKRITVSTIGIIPAMMTFLENSKAHLAVSLHS 217

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             +D R  ++PI   YP+  ++   R +  L + RR++FEY+M KG+ND+PR A  L+++
Sbjct: 218 PFDDERRDIMPIQSVYPITEVVSNIRRWE-LGSQRRVSFEYIMFKGVNDTPRHANELVRL 276

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L GI  +INLI F+P P      +  +DIV F   +K  G +  IR  RG DI AACG L
Sbjct: 277 LNGIKCRINLIRFHPIPDTPLEGTALEDIVDFQNRLKAKGLTVTIRASRGEDIFAACGML 336

Query: 366 KS 367
            +
Sbjct: 337 ST 338


>gi|150016033|ref|YP_001308287.1| radical SAM protein [Clostridium beijerinckii NCIMB 8052]
 gi|205829735|sp|A6LSK1|RLMN_CLOB8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|149902498|gb|ABR33331.1| radical SAM enzyme, Cfr family [Clostridium beijerinckii NCIMB
           8052]
          Length = 353

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 133/336 (39%), Positives = 195/336 (58%), Gaps = 26/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91
            R  QI  WIY +G+++F  M +I + +   L ++F +  P+I++  K + DGT K+LL 
Sbjct: 24  FRGQQILSWIY-KGVKEFDNMKNIPKPLVQKLKENFFVGLPKIIEVYKSNIDGTEKFLLG 82

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
           F    +     IE+V +  K   ++C+S+QVGC++ C FC +  +  VRNLT  EIL Q+
Sbjct: 83  FKDGNL-----IESVLMRYKHGNSICISTQVGCAMGCKFCASTIEGKVRNLTTGEILSQI 137

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           ++ +  + +                 +ISN+V+MG GEPL N++NV K L I S    L+
Sbjct: 138 MVVQDYINE-----------------RISNVVLMGSGEPLDNYNNVIKFLEIVSAEYALN 180

Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
             +R ITLST G VP I  + + E+ + LA+SLHA SND R  ++PI  +Y +E +++AC
Sbjct: 181 IGQRHITLSTCGIVPKIYELADKELSITLALSLHAFSNDKRKEIMPIANRYSIEEILEAC 240

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R+Y   +N RRITFEY ++K +ND   DA  L K+LKG+   +NLIP N      Y  S 
Sbjct: 241 RYYINKTN-RRITFEYALVKDVNDGREDAKALGKLLKGMLCHVNLIPVNEIKENTYKRSS 299

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +K I  FSE +K  G     R   G DI AACGQL+
Sbjct: 300 KKAIEDFSEILKNHGIEVTTRREMGSDINAACGQLR 335


>gi|319744504|gb|EFV96859.1| cfr family radical SAM enzyme [Streptococcus agalactiae ATCC 13813]
          Length = 374

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 210/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    +   I     + R SQIW W+Y + ++ F  M++IS++   LLN
Sbjct: 17  KPSIYSLTRDEL----IAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 72

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 73  ENFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 125

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI  Q++L +          D  G      G ++S+IV
Sbjct: 126 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERVSHIV 173

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV K L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 174 VMGIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 233

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ INR +PLE L  A  +Y   +N RR+TFEY+ML G+ND+P +A  L
Sbjct: 234 LHAPNNDLRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDTPENAQEL 292

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 293 ADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDID 352

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 353 AACGQLRS 360


>gi|168182583|ref|ZP_02617247.1| radical SAM enzyme, Cfr family [Clostridium botulinum Bf]
 gi|237795945|ref|YP_002863497.1| ribosomal RNA large subunit methyltransferase N [Clostridium
           botulinum Ba4 str. 657]
 gi|182674240|gb|EDT86201.1| radical SAM enzyme, Cfr family [Clostridium botulinum Bf]
 gi|229262363|gb|ACQ53396.1| radical SAM enzyme, Cfr family [Clostridium botulinum Ba4 str. 657]
          Length = 342

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 138/362 (38%), Positives = 205/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+++    EEL+E L    I +     R  Q++ WIY + I DF  M +I  + ++LL+ 
Sbjct: 2   ENILDFTLEELKEWL----ISKEEKGFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57

Query: 67  HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  P++V + +S D  T K+L  +      G V IE+V +  K   ++CVS+QVGC 
Sbjct: 58  NFYIGVPKVVKKLMSQDKNTYKFLFEYK----DGNV-IESVVMKYKHGNSICVSTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    ++RNLT+ EIL Q++ A+                   +G +ISN+V+M
Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQ-----------------KEIGERISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL NF NV K L + +    L+  +R ITLST G VP I  + ++   + LAISLH
Sbjct: 156 GSGEPLDNFKNVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  + LR  ++PI  KY ++ L++AC +Y   +N RRITFEY ++KG NDS ++A  L  
Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKKLST 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG    +NLIP N      Y  S  K+I +F   +K +G  + IR   G DI AACGQ
Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTSKNIESFGNILKENGIETTIRREMGADINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|256762921|ref|ZP_05503501.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256684172|gb|EEU23867.1| conserved hypothetical protein [Enterococcus faecalis T3]
          Length = 357

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 220/379 (58%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVTSFSEMSNISKSLMIL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    D  G ++           ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG  P I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLAPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N RR+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP     +Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|325286898|ref|YP_004262688.1| Ribosomal RNA large subunit methyltransferase N [Cellulophaga
           lytica DSM 7489]
 gi|324322352|gb|ADY29817.1| Ribosomal RNA large subunit methyltransferase N [Cellulophaga
           lytica DSM 7489]
          Length = 347

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 212/367 (57%), Gaps = 26/367 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK+ +  + +E++        + Q     R +Q+++W++ +G   F+ M+++S+E R LL
Sbjct: 5   KKKDIRALTKEQIRAFF----VAQGDKAFRGNQVYEWLWQKGAHSFEAMTNVSKETRQLL 60

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + +F I + ++   + S DGT K  ++     I     +E+V IP K+R T CVSSQVGC
Sbjct: 61  DDNFVINHIKVDQMQRSSDGTIKNAVQLHDGLI-----VESVLIPTKTRTTACVSSQVGC 115

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C FC T   K +RNL  +EI  QV+              I+        RK+SNIV 
Sbjct: 116 SLDCRFCATSRLKRMRNLNPDEIYDQVVA-------------IDNESRLYFDRKLSNIVF 162

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAIS 242
           MGMGEPL N++NV K++   + + GL+ S +RIT+STSG VP + +    +E+   LA+S
Sbjct: 163 MGMGEPLMNYNNVLKAIDKITSTEGLAMSPKRITVSTSG-VPKMIKKMADDEVKFKLAVS 221

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+  +++R  ++P N  +PL+ L +A +++   + +R IT+EYV+  GIND+  DA  L
Sbjct: 222 LHSAVDEIRTSIMPFNATFPLKDLREALQYWYAKTKSR-ITYEYVVWDGINDTQNDANAL 280

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +   +  P+K+NLI +NP    E+  +  K I  +   ++R+G +  +R  RG DI AAC
Sbjct: 281 VDFCRFAPSKVNLIEYNPIDDGEFQQASNKAIDMYVTTLERNGITVTVRRSRGKDIDAAC 340

Query: 363 GQLKSLS 369
           GQL + S
Sbjct: 341 GQLANKS 347


>gi|257084807|ref|ZP_05579168.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256992837|gb|EEU80139.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
          Length = 357

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 220/379 (58%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+I + +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNIPKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    D  G ++           ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N RR+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP     +Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVENQ 357


>gi|315646180|ref|ZP_07899300.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
           vortex V453]
 gi|315278379|gb|EFU41695.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
           vortex V453]
          Length = 346

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 200/354 (56%), Gaps = 25/354 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL+    + G P      R +QI+ W+YV+ + DF+ M+++S+E+R  L Q FS +   
Sbjct: 11  EELQAWAQENGEPA----FRGTQIYDWLYVKRVNDFEEMTNLSKELRGKLEQQFSFVTLS 66

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
            + +  S DGT K+L       +     IETV +      ++CV++QVGC + C+FC + 
Sbjct: 67  EITKLESKDGTVKFLF-----GLHDDHAIETVIMKHNYGNSICVTTQVGCRIGCTFCAST 121

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNLT+ EI+ QV+ A+ +L                 G ++S+IV+MG GEP  N+
Sbjct: 122 LGGLKRNLTSGEIVAQVVQAQKIL--------------DKTGERVSSIVIMGSGEPFENY 167

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
           +   K L       GL+  +R IT+STSG VPNI +  EE   + LAIS+HA ++ LR+ 
Sbjct: 168 EATMKFLRTMIHEKGLNIGQRHITVSTSGIVPNIYKFTEENTQINLAISIHAPNDKLRSK 227

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           L+P+NR++P + +I++ RHY      RRITFEY ++ G+ND    A  L  ++K +   +
Sbjct: 228 LMPVNRRFPFDDVIESLRHYQA-KTGRRITFEYALIGGVNDQVEHAEELADVIKDMNCFV 286

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           NLIP N  P  +Y+ + + DI  F   +   G +  IR  +G DI AACGQL++
Sbjct: 287 NLIPVNHVPERKYVRTSRNDIFKFQRALADKGVNVTIRREQGHDIAAACGQLRA 340


>gi|22536637|ref|NP_687488.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           agalactiae 2603V/R]
 gi|76797765|ref|ZP_00780032.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 18RS21]
 gi|77405571|ref|ZP_00782661.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae H36B]
 gi|81588624|sp|Q8E1A3|RLMN_STRA5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|22533475|gb|AAM99360.1|AE014212_19 conserved hypothetical protein TIGR00048 [Streptococcus agalactiae
           2603V/R]
 gi|76586913|gb|EAO63404.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 18RS21]
 gi|77175793|gb|EAO78572.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae H36B]
          Length = 368

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 210/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    +   I     + R SQIW W+Y + ++ F  M++IS++   LLN
Sbjct: 11  KPSIYSLTRDEL----IAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 67  ENFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 119

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI  Q++L +          D  G      G ++S+IV
Sbjct: 120 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERVSHIV 167

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV K L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 168 VMGIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 227

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ INR +PLE L  A  +Y   +N RR+TFEY+ML G+ND+P +A  L
Sbjct: 228 LHAPNNDLRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDTPENAQEL 286

Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 287 ADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDID 346

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 347 AACGQLRS 354


>gi|315919828|ref|ZP_07916068.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693703|gb|EFS30538.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 344

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 200/364 (54%), Gaps = 29/364 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MSKYPLLGMTLVELQSLAKRLGMPG----FTAKQIVSWLYEKKVASIDEMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     VDE  S DGT K+L +     +G    +E+VYIP+  R TLCVSSQVG
Sbjct: 57  LKQNYEVGAAAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                    +P    K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI------------------HSLPERD-KLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L + + + G ++S +RITLST G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALELLTANYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R+ L+P  R Y +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPLTAQRSELMPAERAYSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +D   +  F + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKS 367
            L +
Sbjct: 332 MLST 335


>gi|153939514|ref|YP_001391802.1| radical SAM protein [Clostridium botulinum F str. Langeland]
 gi|205829628|sp|A7GG92|RLMN_CLOBL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|152935410|gb|ABS40908.1| radical SAM enzyme, Cfr family [Clostridium botulinum F str.
           Langeland]
 gi|295319828|gb|ADG00206.1| radical SAM enzyme, Cfr family [Clostridium botulinum F str.
           230613]
          Length = 342

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 204/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+++    EEL+E L    I +     R  Q++ WIY + I DF  M +I  + ++LL+ 
Sbjct: 2   ENILDFTLEELKEWL----ISKEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57

Query: 67  HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F +  P++V + +S D  T K+L  +    I     IE+V +  K   ++CVS+QVGC 
Sbjct: 58  NFYVGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    ++RNLT+ EIL Q++ A+                   +G +ISN+V+M
Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQ-----------------KEIGERISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL NF NV K L + +    L+  +R ITLST G VP I  + ++   + LAISLH
Sbjct: 156 GSGEPLDNFQNVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  + LR  ++PI  KY ++ L++AC +Y   +N RRITFEY ++KG NDS ++A  L  
Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKKLST 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG    +NLIP N      Y  S  K+I +F   +K +G  + IR   G DI AACGQ
Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|121612139|ref|YP_001001357.1| radical SAM protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167006246|ref|ZP_02272004.1| radical SAM enzyme, Cfr family protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|205829695|sp|A1W1W6|RLMN_CAMJJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|87249061|gb|EAQ72023.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 356

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 139/352 (39%), Positives = 198/352 (56%), Gaps = 34/352 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++WIY +   +F  MS + +++R  L Q+F     + V  + S DG+ K+L   
Sbjct: 23  FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               I G + +E+V +P K             +R T+CVSSQVGC   CSFC T    L 
Sbjct: 83  ----IDG-LRVESVLLPMKKEKINTEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL+  EI+ Q+L  +                IP   R   NIV MGMGEPL N  NV K
Sbjct: 138 RNLSTGEIVGQILWIKKQNN------------IPYERR--VNIVYMGMGEPLDNLKNVSK 183

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I + + GL+ S RR T+STSG    I  +G+  +GV+LAISLHAV+++LR  L+PIN
Sbjct: 184 AVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y +  ++DA R +P +   +R+ FEY+++ GIND    A  L+K+L GI AK+NLI F
Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           NP  G  Y     ++ + F + +   G +  IR  +GLDI AACGQLK  +K
Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 354


>gi|171778734|ref|ZP_02919830.1| hypothetical protein STRINF_00682 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282691|gb|EDT48115.1| hypothetical protein STRINF_00682 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 366

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 218/368 (59%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL E +++ G      + R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 9   KPSIYGLTRDELIEWVIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAILN 64

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   +V E  + DGT K+L   P   +     IETV + +    ++CV+SQVG
Sbjct: 65  ENFCVNPLKQRVVQE--ASDGTVKYLFELPDSML-----IETVLMRQHYGLSVCVTSQVG 117

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+LT+ EI  Q+++ +    D  G ++           ++S++V
Sbjct: 118 CNIGCSFCASGLIKKQRDLTSGEITSQIMMVQKYF-DERGQDE-----------RVSHVV 165

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV + +   ++  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 166 VMGIGEPFDNYDNVLRFVRTINNDNGLAIGARHITISTSGLAHKIREFAHESLQVNLAVS 225

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ +NR +PLE L  A  +Y   +N RR+TFEY+ML  +NDSP +A  L
Sbjct: 226 LHAPNNELRSQIMRVNRSFPLEKLFTAIEYYIETTN-RRVTFEYIMLNDVNDSPENAQEL 284

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + INLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 285 ADLTKKIRKLSYINLIPYNPVSEHDQYRRSSKEHVAAFYDVLKKNGVNCVVRQEHGTDID 344

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 345 AACGQLRS 352


>gi|162447121|ref|YP_001620253.1| radical SAM superfamily Fe-S oxidoreductase [Acholeplasma laidlawii
           PG-8A]
 gi|205829657|sp|A9NEU7|RLMN_ACHLI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|161985228|gb|ABX80877.1| Fe-S-cluster redox enzyme, radical SAM superfamily [Acholeplasma
           laidlawii PG-8A]
          Length = 338

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 209/359 (58%), Gaps = 32/359 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           +  EELEE +++ G    + + R  QIW W+Y + I  F  M++I +++  LLN +++  
Sbjct: 6   LTYEELEEFIVENG----YKKFRADQIWNWLYKQKIEAFSEMNNIPEDIIKLLNDNYTFA 61

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
             E V +  S DGT K+L       +     IETV +      + CV++QVGC++ CSFC
Sbjct: 62  GLETVIKNTSADGTIKFLFDLKDANL-----IETVLMSHNYGMSACVTTQVGCNIGCSFC 116

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            +G  K  R+LTA EI+ Q++ A                     G ++S+IV+MG+GEP 
Sbjct: 117 ASGVLKKKRDLTAGEIVAQIIRAE-----------------KESGVRVSSIVIMGIGEPF 159

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGVMLAISLHAVSN 248
            N+ N  K +SI +   GL+   R IT+STSG VP I   A +G  I V LA+SLHA +N
Sbjct: 160 DNYKNFVKFISIVNHPKGLAIGARHITVSTSGLVPKIKEFAHLG--IQVNLAVSLHAPNN 217

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           ++R+ L+ IN ++ +E ++DA ++Y  ++N RR+T EY+M++ +NDS   A+ L K+LKG
Sbjct: 218 EIRSKLMKINDRFKVEEVVDAIKYYIHVTN-RRVTIEYIMIQDLNDSVETAVELAKLLKG 276

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +   +NLIP+N     +Y  S  ++ + F + +K    ++ +R  +G DI AACGQL+S
Sbjct: 277 MNVYVNLIPYNTVKEADYQRSSLENRLAFHKTLKEHKITAILRKEQGHDINAACGQLRS 335


>gi|218563299|ref|YP_002345079.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|123042659|sp|Q0P7R8|RLMN_CAMJE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|112361006|emb|CAL35807.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315926640|gb|EFV06020.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 356

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 139/352 (39%), Positives = 199/352 (56%), Gaps = 34/352 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++WIY +   +F  MS + +++R  L ++F     + V  + S DG+ K+L   
Sbjct: 23  FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELARNFHFSPVKCVKNEQSKDGSIKYLFEL 82

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               I G + +E+V +P K             +R T+CVSSQVGC   CSFC T    L 
Sbjct: 83  ----IDG-LRVESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL+A EI+ Q+L  +                IP   R   NIV MGMGEPL N  NV K
Sbjct: 138 RNLSAGEIVGQILWIKKQNN------------IPYERR--VNIVYMGMGEPLDNLKNVSK 183

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I + + GL+ S RR T+STSG    I  +G+  +GV+LAISLHAV+++LR  L+PIN
Sbjct: 184 AVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y +  ++DA R +P +   +R+ FEY+++ GIND    A  L+K+L GI AK+NLI F
Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           NP  G  Y     ++ + F + +   G +  IR  +GLDI AACGQLK  +K
Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 354


>gi|293402260|ref|ZP_06646398.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304367|gb|EFE45618.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 352

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 197/361 (54%), Gaps = 21/361 (5%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78
           E + ++ +     + R  QI++W+Y + +     MSD+S+E R +L  ++++    + D+
Sbjct: 10  EQMAELALSHEWKKFRGHQIFQWLYRKRVTSIDEMSDLSKETREILKANYALKPLTLKDK 69

Query: 79  KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138
           ++S DGT K+L       +     IE+V +      ++CV+SQVGC+++C+FC +G  K 
Sbjct: 70  QVSSDGTTKYLFALEDGSL-----IESVLMQFDYGKSICVTSQVGCNMSCAFCASGLTKK 124

Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198
            RNLT+ E++ QV+  +    D    E+           ++S+IV+MG GEP  N++NV 
Sbjct: 125 KRNLTSGEMVAQVMYVQQ---DLDKQEE-----------RLSHIVVMGTGEPFDNYENVM 170

Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPI 257
             LS  +   GL    R IT+ST G VP I    +E     LAISLHA +N LR+ L+PI
Sbjct: 171 NFLSTVNHDRGLGIGARHITISTCGVVPKIYEFSKEHTQYNLAISLHAPNNTLRDELMPI 230

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
           N  YPLE L+ A R Y    N RR+TFEY++L+G+ND       L K+L+G+ A +NLIP
Sbjct: 231 NHAYPLEELMKAIRQYAA-ENNRRLTFEYILLRGVNDQKEHVKQLAKLLRGLNAYVNLIP 289

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
           +N      +   D    + F + + + G    IR   G DI AACGQL+    R     R
Sbjct: 290 YNAVDEKGFQGVDHAHAMVFYDALMKEGIRCTIRKEHGADIDAACGQLRVKHLRKEAKER 349

Query: 378 Q 378
           Q
Sbjct: 350 Q 350


>gi|222823067|ref|YP_002574640.1| radical SAM enzyme (Cfr family) [Campylobacter lari RM2100]
 gi|254807160|sp|B9KEA4|RLMN_CAMLR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|222538288|gb|ACM63389.1| conserved hypothetical protein, radical SAM enzyme (Cfr family)
           [Campylobacter lari RM2100]
          Length = 356

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 210/374 (56%), Gaps = 42/374 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++   +EELE  +          + R  QI++W+Y +   DF  MS + ++ R  L +
Sbjct: 5   KNMLDFTKEELENLV--------QPKFRAKQIFEWVYKKYADDFLQMSSLPKDFRVYLQK 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-------------SR 113
           +F     + V ++ S DG+ K+L       + G  +IE V +P K             +R
Sbjct: 57  NFHFSPLKCVKDEKSKDGSIKYLFEL----LDGK-KIEAVLLPMKEELVDENGKIIKHAR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +            +   IP
Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLSRNLSAGEIVGQILWIK------------KHNKIP 159

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
              R   NIV MGMGEPL N  NV K++ I +D+  L+ S RR T+STSG    I  +GE
Sbjct: 160 YERR--VNIVYMGMGEPLDNLKNVSKAVKILADNDALAISPRRQTISTSGLAKQIKELGE 217

Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV+++LR+ L+PIN+ Y +  +++A R++P +   +R+ FEY+++ GI
Sbjct: 218 MNLGVLLAISLHAVNDELRSELMPINKAYNIASIMEAVRNFP-IDQRKRVMFEYLLIDGI 276

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR 
Sbjct: 277 NDKIEHAKELVKLLNGIKAKVNLILFNPHEGSLYNRPSVENAIKFQDYLSAKGVTCTIRE 336

Query: 353 PRGLDILAACGQLK 366
            +GLDI AACGQLK
Sbjct: 337 SKGLDISAACGQLK 350


>gi|288818052|ref|YP_003432399.1| radical SAM enzyme, Cfr family [Hydrogenobacter thermophilus TK-6]
 gi|288787451|dbj|BAI69198.1| radical SAM enzyme, Cfr family [Hydrogenobacter thermophilus TK-6]
 gi|308751653|gb|ADO45136.1| radical SAM enzyme, Cfr family [Hydrogenobacter thermophilus TK-6]
          Length = 360

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 132/358 (36%), Positives = 210/358 (58%), Gaps = 32/358 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL+E+L K+G+P    + R  Q+  W+Y +   DF  M+DIS+E R LL +++ +   E
Sbjct: 10  EELKESLSKMGMP----KYRAVQVLGWVYKKFQTDFDAMTDISKEDRKLLKENYRVHTLE 65

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
           + DE +  + + K+L +     + G   IE+V I E+   TLCVSSQ+GC++ C FC T 
Sbjct: 66  LTDE-VHAEDSVKYLFK----TLDGHT-IESVLIRERDHLTLCVSSQIGCAVGCKFCATA 119

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNL  +EI+ Q+L              I+  ++P   ++I N+V MGMGEPL N+
Sbjct: 120 IDGLTRNLRTDEIIDQLL-------------QIQKKILP---QRIRNVVFMGMGEPLANY 163

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLAISLHAVSNDLR 251
           +NV+K++ +     G+  SKRRI++STSG +  I R+ E+     V LA+SL+A S  LR
Sbjct: 164 ENVRKAVEVMVSPWGIDLSKRRISVSTSGLIAQIKRMSEDPIMREVNLAVSLNAPSQKLR 223

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
            +++PI++   L  L+   + YP     RRI  EYV++KG+ND   DAL+L +++     
Sbjct: 224 ELIMPISKTNNLSELMQVLKEYP-YPKGRRIMLEYVLIKGLNDKKEDALSLAQLIGKYKN 282

Query: 312 --KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             K+NLIP+NP P   Y     +++  F + + ++G S+ +R  +G++I  ACGQL+ 
Sbjct: 283 KFKVNLIPYNPDPELPYERPSIEEVYEFQKVLWQTGISTFVRLSKGINIFGACGQLRQ 340


>gi|51892489|ref|YP_075180.1| hypothetical protein STH1351 [Symbiobacterium thermophilum IAM
           14863]
 gi|81610561|sp|Q67PQ7|RLMN_SYMTH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|51856178|dbj|BAD40336.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 371

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 216/371 (58%), Gaps = 28/371 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-H 62
           L ++ L GM  EE+ + +  +G P    R R  Q+++W+Y +G++DF  M+++   +R H
Sbjct: 21  LGRQPLPGMSLEEMADLMADLGEP----RFRAKQLFQWVYQKGVKDFDAMTNLPARLRQH 76

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L       +  +  ++     GT K+L R     +    ++E+V + +    ++CV++QV
Sbjct: 77  LAGTTMLRLLEKETEQHDRRTGTTKYLFR-----LADGSQVESVLMRQSWGNSVCVTTQV 131

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C+FC +    LVRNLTA EI+ Q+++ +  L                 G +IS +
Sbjct: 132 GCRMGCTFCASTVGGLVRNLTAGEIVDQIVMMQRELPQ---------------GERISTV 176

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL N+D+V K++ +  D  GL+   R IT+STSG VP + R+ EE + + LA+
Sbjct: 177 VLMGSGEPLENYDHVLKAVRLVHDPEGLNIGYRHITISTSGIVPGMRRLAEEGLPITLAL 236

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +++LR  L+P+ R +PL  ++ A R Y G    RR+T+EY++++G+ND P +A  
Sbjct: 237 SLHAPTDELRRQLMPVARIWPLAEVLAAAREY-GEKTGRRVTYEYILIEGVNDGPEEARQ 295

Query: 302 LIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           L ++LKG  A +NLIP NP     +Y     + +  F E ++ +G ++ +R   G +I A
Sbjct: 296 LARLLKGALAHVNLIPMNPVAERPQYRRPGPERVNRFKEILESNGIATTVRREMGGEIDA 355

Query: 361 ACGQLKSLSKR 371
           ACGQL++ ++R
Sbjct: 356 ACGQLRNRAQR 366


>gi|307264804|ref|ZP_07546366.1| radical SAM enzyme, Cfr family [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920062|gb|EFN50274.1| radical SAM enzyme, Cfr family [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 342

 Score =  232 bits (591), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 141/361 (39%), Positives = 204/361 (56%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  M  EE+EE  + IG      R R  QI+KWIY + I DF  M+DIS+ +R  L + 
Sbjct: 3   NLKDMTLEEMEEFFVNIG----ESRYRAKQIYKWIYDKKITDFDEMTDISKNLRSKLKEI 58

Query: 68  FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   +I   ++S  D T K+L       I     IE V I  +   T CVS+QVGC++
Sbjct: 59  AYISQLKIEARRVSEVDDTVKYLFLLEDNNI-----IEGVAIKYRFGNTACVSTQVGCNM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +     VR+L A E++ QV+   ++ GD+                KISNIV+MG
Sbjct: 114 RCSFCASAIGGKVRDLKASEMIDQVI---AIDGDYG---------------KISNIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+D V K + I ++  GL    R IT+ST G VP I +  +E + V L+ISLHA
Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPQGLGIGGRHITISTCGIVPKIYQFADEKLQVNLSISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  L+PIN+ YPLE L+ AC++Y   +  RRITFEY +++G+ND    A  L+ +
Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYVEKTR-RRITFEYSLIEGVNDKKEHAYQLVDL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N      +  ++ + ++ F + I+ +G S  +R   G DI AACGQL
Sbjct: 275 LKGMLCHVNLIPINYVKEIGFKKANNEKVMMFKKIIEDAGISCTVRRELGSDIEAACGQL 334

Query: 366 K 366
           +
Sbjct: 335 R 335


>gi|168180611|ref|ZP_02615275.1| radical SAM enzyme, Cfr family [Clostridium botulinum NCTC 2916]
 gi|182668374|gb|EDT80353.1| radical SAM enzyme, Cfr family [Clostridium botulinum NCTC 2916]
          Length = 342

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 205/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+++    EEL+E L    I +     R  Q++ WIY + I DF  M +I  + ++LL+ 
Sbjct: 2   ENILDFTLEELKEWL----ISKEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57

Query: 67  HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F +  P++V + +S D  T K+L  +    I     IE+V +  K   ++CVS+QVGC 
Sbjct: 58  NFYVGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    ++RNLT+ EIL Q++ A+                   +G +ISN+V+M
Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQ-----------------KEIGERISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL NF+NV K L + +    L+  +R ITLST G VP I  + ++   + LAISLH
Sbjct: 156 GSGEPLDNFENVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  + LR  ++PI  KY ++ L++AC +Y   +N RRITFEY ++KG NDS ++A  L  
Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKKLSI 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG    +NLIP N      Y  S  K+I +F   +K +G  + IR   G DI AACGQ
Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|228472503|ref|ZP_04057263.1| radical SAM enzyme, Cfr family [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275916|gb|EEK14672.1| radical SAM enzyme, Cfr family [Capnocytophaga gingivalis ATCC
           33624]
          Length = 345

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 135/363 (37%), Positives = 210/363 (57%), Gaps = 25/363 (6%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
            + +EEL+   L  G        R +Q+++W++ +G   F+ M+++S+E R LL++HF I
Sbjct: 6   ALKKEELQAFFLSHG----EKAFRANQVYEWLWTKGAHSFEQMTNLSKETRQLLSEHFVI 61

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
            + ++   + S DGT K  +R     +   + +E+V IP  +R T CVSSQVGCSL CSF
Sbjct: 62  NHIKVDTMQRSEDGTIKNAVR-----LHDGLYVESVLIPTDTRITACVSSQVGCSLNCSF 116

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C T   K +RNL+ +EI  QVL              I+       GR + NIV MGMGEP
Sbjct: 117 CATARLKRMRNLSPDEIFDQVLT-------------IDQQSRLYYGRPLRNIVFMGMGEP 163

Query: 191 LCNFDNVKKSLS-IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           L N+ NV K++  I S+  GL FS +RIT+STSG    I ++ ++ +   LA+SLH+   
Sbjct: 164 LMNYPNVMKAIERITSEKEGLGFSPKRITVSTSGVSKLIRKMADDKVKFRLAVSLHSAIE 223

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           + RN ++P    +PL  L  A +++   + +R IT+EYV+ KGINDSP+D   L+   + 
Sbjct: 224 ETRNKIMPWTVDFPLTELRTALQYWYQQTKSR-ITYEYVVWKGINDSPKDVEALVAFCRF 282

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
            P K+NLI +NP     +  +D+K +  +   ++ +G ++ IR  RG DI AACGQL + 
Sbjct: 283 APCKVNLIEYNPIDEGLFEQADEKALQLYKRKLEEAGITTTIRYSRGKDIDAACGQLANK 342

Query: 369 SKR 371
           +++
Sbjct: 343 NEK 345


>gi|332879827|ref|ZP_08447516.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332682204|gb|EGJ55112.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 349

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 207/362 (57%), Gaps = 24/362 (6%)

Query: 13  MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72
           +R   +E L +I         R +Q+++W++ +G+  F+ M+++ +  R +L++HF I +
Sbjct: 8   IRAFTKEELRRIFEENGDQAFRGNQVYEWLWQKGVHSFEAMTNLPKATREMLDKHFVINH 67

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
            ++   + S DGT K  +R     +     +E+V IP  +R T CVSSQVGCSL CSFC 
Sbjct: 68  IKVDVMQRSDDGTIKNAVRLHDGLL-----VESVLIPTDTRTTACVSSQVGCSLNCSFCA 122

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           T   K +RNL  +EI  QV +             I+       GR +SNIV MGMGEPL 
Sbjct: 123 TARLKRMRNLLPDEIFDQVRV-------------IDEQSKAFFGRPLSNIVFMGMGEPLM 169

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHAVSNDL 250
           N++NV K++   + + GL  S +RITLSTSG VP + +    +E+   LA+SLH+  + +
Sbjct: 170 NYNNVLKAIDKITSTEGLGMSAKRITLSTSG-VPKLIKKMADDEVKFKLAVSLHSAIDSV 228

Query: 251 RNILVPINRKYPLEMLIDACRH-YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           R  ++P N ++PL  L +A ++ Y    N  RIT+EYV+ KGIND  +D   LIK  K  
Sbjct: 229 RTSIMPFNEQFPLSELREALQYWYQKTKN--RITYEYVVWKGINDQRKDVEALIKFCKFA 286

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           P+K+NLI +NP    E+  +D + +  +   ++ +G +  +R  RG DI AACGQL + +
Sbjct: 287 PSKVNLIEYNPIDDGEFQQADSRALTLYQTMLEEAGITVTVRHSRGKDIDAACGQLANKT 346

Query: 370 KR 371
            +
Sbjct: 347 TK 348


>gi|307272756|ref|ZP_07554003.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0855]
 gi|306510370|gb|EFM79393.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0855]
          Length = 357

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 220/379 (58%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    D  G ++           ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N RR+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP     +Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AA GQL+S   +  KV  Q
Sbjct: 339 AAFGQLRSKQMKKEKVKNQ 357


>gi|320546296|ref|ZP_08040616.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812]
 gi|320449073|gb|EFW89796.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812]
          Length = 366

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 217/368 (58%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL E  ++ G      + R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 9   KPSIYGLTRDELIEWAIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAILN 64

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   IV E  + DGT K+L   P   +     IETV + +    ++CV+SQVG
Sbjct: 65  ENFCVNPLKQRIVQE--ASDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTSQVG 117

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+LT+ EI  Q+++ +    D  G ++           ++S++V
Sbjct: 118 CNMGCSFCASGLIKKQRDLTSGEITSQIMMVQKYF-DERGQDE-----------RVSHVV 165

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV + +   ++  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 166 VMGIGEPFDNYDNVLRFVRTINNDNGLAIGARHITISTSGLAHKIREFAHESLQVNLAVS 225

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ +NR +PLE L  A  +Y   +N RR+TFEY+ML  +NDSP +A  L
Sbjct: 226 LHAPNNELRSQIMRVNRSFPLEKLFAAIEYYVETTN-RRVTFEYIMLNDVNDSPENAQEL 284

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + INLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 285 ADLTKKIRKLSYINLIPYNPVSEHDQYSRSSKEHVAAFYDVLKKNGVNCVVRQEHGTDID 344

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 345 AACGQLRS 352


>gi|326389541|ref|ZP_08211108.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994546|gb|EGD52971.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
           200]
          Length = 342

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 140/361 (38%), Positives = 204/361 (56%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  M  EE+EE  + IG      R R  QI+KWIY + I DF  M+DIS+ +R  L + 
Sbjct: 3   NLKDMTLEEMEEFFVNIG----ESRYRAKQIYKWIYDKKITDFDEMTDISKNLRSKLKEI 58

Query: 68  FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   +I   ++S  D T K+L       I     IE V I  +   T C+S+QVGC++
Sbjct: 59  AYISQLKIEARRVSEVDDTVKYLFLLEDNNI-----IEGVAIKYRFGNTACISTQVGCNM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +     VR+L A E++ QV+   ++ GD+                KISNIV+MG
Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQVI---AIDGDYG---------------KISNIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+D V K + I ++  GL    R IT+ST G VP I +  +E + V L+ISLHA
Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  L+PIN+ YPLE L+ AC++Y   +  RRITFEY +++G+ND    A  L+ +
Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYVEKTR-RRITFEYSLIEGVNDKKEHAYQLVDL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N      +  ++ + ++ F + I+ +G S  +R   G DI AACGQL
Sbjct: 275 LKGMLCHVNLIPINYVKEIGFKKANNEKVMMFKKIIEDAGISCTVRRELGSDIEAACGQL 334

Query: 366 K 366
           +
Sbjct: 335 R 335


>gi|77411450|ref|ZP_00787796.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae CJB111]
 gi|77162536|gb|EAO73501.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae CJB111]
          Length = 368

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 210/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    +   I     + R SQIW W+Y + ++ F  M++IS++   LLN
Sbjct: 11  KPSIYSLTRDEL----IAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 67  ENFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 119

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI  Q++L +          D  G      G ++S+IV
Sbjct: 120 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERVSHIV 167

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV K L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 168 VMGIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 227

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +PLE L  A  +Y   +N RR+TFEY+ML G+ND+P +A  L
Sbjct: 228 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDTPENAQEL 286

Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 287 ADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDID 346

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 347 AACGQLRS 354


>gi|307722066|ref|YP_003893206.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306980159|gb|ADN10194.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 364

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 216/373 (57%), Gaps = 38/373 (10%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+SL+   ++EL E L+K   P      R  QI+ W+Y +  +DF  M +I + ++  L+
Sbjct: 5   KQSLLDFTQKELTE-LVK---PS----FRAKQIYGWMYHQYAQDFDAMKNIPKAMKEELS 56

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI-----------ETVYIPEKSRG 114
           Q + +   +IV ++ S DGT K+L        G  VE            E   I ++++ 
Sbjct: 57  QKYIVNPLKIVRKEESSDGTIKYLFELQD---GKTVEAVWLKMKDAQIDENGEIIQEAKY 113

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           T+CVS+QVGC + CSFC T      R+L+A EI+ QV+   +L  D     +        
Sbjct: 114 TICVSTQVGCKVGCSFCLTAKGGFTRDLSAGEIVAQVV---NLKRDNAHKHN-------- 162

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE- 233
             RKI NIV MGMGEPL N +N+ K++ I  +  GL+ S +R T+STSG    I ++G+ 
Sbjct: 163 --RKI-NIVYMGMGEPLDNLENLAKAIEIFKEEEGLAISGKRQTVSTSGLSNKIDKLGKM 219

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
           ++GV +AISLHAV ++LR  L+P+N+ + +  +I+A + +P +   +R+ FEY+++K  N
Sbjct: 220 DLGVHIAISLHAVDDELRTELIPMNKAHNINSIIEAVKRFP-IDTRKRVMFEYLVIKNKN 278

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D    A  L+K+L GI AK+NLI FNP+PG  Y    ++D+V F E +   G  S IR  
Sbjct: 279 DDLGSAKKLVKLLSGIKAKVNLIYFNPYPGTPYERPSREDMVKFQEYLINHGLLSTIRDS 338

Query: 354 RGLDILAACGQLK 366
           +G+DI AACGQLK
Sbjct: 339 KGIDISAACGQLK 351


>gi|167037727|ref|YP_001665305.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040388|ref|YP_001663373.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
           sp. X514]
 gi|256752274|ref|ZP_05493137.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914472|ref|ZP_07131788.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
 gi|307724292|ref|YP_003904043.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
 gi|320116142|ref|YP_004186301.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|205829918|sp|B0KA06|RLMN_THEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829919|sp|B0K1Y9|RLMN_THEPX RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|166854628|gb|ABY93037.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X514]
 gi|166856561|gb|ABY94969.1| radical SAM enzyme, Cfr family [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256748842|gb|EEU61883.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889407|gb|EFK84553.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
 gi|307581353|gb|ADN54752.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
 gi|319929233|gb|ADV79918.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 342

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 141/361 (39%), Positives = 201/361 (55%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  M  EE+EE  + IG      R R  QI+KWIY + + DF  M+DIS+ +R  L + 
Sbjct: 3   NLKDMTLEEMEEFFVNIG----ESRYRAKQIYKWIYGKKVTDFDQMTDISKNLRSKLKEI 58

Query: 68  FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             +   +I + ++S  D T K+L       I     IE V I  +   T CVS+QVGC++
Sbjct: 59  AYVSQLKIEERRVSEIDDTVKYLFLLEDGNI-----IEGVAIKYRFGNTACVSTQVGCNM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +     VR+L A E++ QV                  M I S   KISNIV+MG
Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQV------------------MAIDSDYGKISNIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+D V K + I ++  GL    R IT+ST G VP I +  +E + V L+ISLHA
Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  L+PIN+ YPLE L+ AC++Y   +  RRITFEY +++G+ND    A  L+ +
Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYVDKTR-RRITFEYSLIEGVNDKKEHAYQLVDL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   INLIP N      +  ++ + ++ F   I+ +G S  +R   G DI AACGQL
Sbjct: 275 LKGMLCHINLIPINYVREIGFKKANNEKVMMFKRIIEDAGISCTVRRELGSDIEAACGQL 334

Query: 366 K 366
           +
Sbjct: 335 R 335


>gi|170759295|ref|YP_001787821.1| radical SAM protein [Clostridium botulinum A3 str. Loch Maree]
 gi|205829629|sp|B1KX56|RLMN_CLOBM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|169406284|gb|ACA54695.1| radical SAM enzyme, Cfr family [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 342

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 204/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+++    EEL+E L    I +     R  Q++ WIY + I DF  M +I  + ++LL+ 
Sbjct: 2   ENILDFTLEELKEWL----ISKEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57

Query: 67  HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  P++V + +S D  T K+L  +    I     IE+V +  K   ++CVS+QVGC 
Sbjct: 58  NFYIGVPKVVKKLMSQDKNTYKFLFEYNDGNI-----IESVVMKYKHGNSICVSTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    ++RNLT+ EIL Q++ A+                   +G +ISN+V+M
Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQ-----------------KEIGERISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL NF NV + L + +    L+  +R ITLST G VP I  + ++   + LAISLH
Sbjct: 156 GSGEPLDNFKNVTEFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  + LR  ++PI  KY ++ L++AC +Y   +N RRITFEY ++KG NDS ++A  L  
Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKKLST 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG    +NLIP N      Y  S  K+I +F   +K +G  + IR   G DI AACGQ
Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|289578505|ref|YP_003477132.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
 gi|289528218|gb|ADD02570.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
          Length = 342

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 140/361 (38%), Positives = 201/361 (55%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  M  EE+EE  + IG      R R  QI+KWIY + I DF  M+DIS+ +R  L + 
Sbjct: 3   NLKNMTLEEMEEFFVNIG----ESRYRAKQIYKWIYGKKITDFDKMTDISKNLRSKLKEI 58

Query: 68  FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   ++   ++S  D T K+L     + I     IE V I  +   T CVS+QVGC++
Sbjct: 59  AYISQLKVEARRVSEIDNTVKYLFLLEDKNI-----IEGVAIKYRFGNTACVSTQVGCNM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +     VR+L A E++ QV                  M I S   KISNIV+MG
Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQV------------------MSIDSDYGKISNIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+D V K + I ++  GL    R IT+ST G +P I +  +E + V L+ISLHA
Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  L+PIN+ YPLE L+ AC++Y   +  RRITFEY +++G+ND    A  L+ +
Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYIEKTR-RRITFEYSLIEGVNDKKEHAYQLVDL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N      +  +  + ++ F + I+ +G S  +R   G DI AACGQL
Sbjct: 275 LKGMLCHVNLIPINYVKEIGFKKAANEKVMMFKKIIENAGISCTVRRELGSDIEAACGQL 334

Query: 366 K 366
           +
Sbjct: 335 R 335


>gi|325290448|ref|YP_004266629.1| 23S rRNA m(2)A-2503 methyltransferase [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965849|gb|ADY56628.1| 23S rRNA m(2)A-2503 methyltransferase [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 351

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 204/370 (55%), Gaps = 29/370 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K    G+   E+E+  L+ GI     + R  Q+++W+  +G+R +  M +I QE    
Sbjct: 1   MEKYDCRGLSEPEMEKLCLQNGIK----KFRADQVFRWVQQKGVRCWDEMKNIGQEDTDK 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-----EKSRGTLCV 118
           L + F +   EIV E++S DGTRK+L R P         IETV +       ++R T+CV
Sbjct: 57  LKKVFCLQPLEIVKEQVSKDGTRKFLFRLP-----DGERIETVLMDYEKDLSRNRETVCV 111

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           S+QVGC + C FC TG     RNL+A EI  QVL            E +  M I      
Sbjct: 112 STQVGCPVGCPFCATGVNGFHRNLSAGEITGQVL------------EIVRRMRINDPSFN 159

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           ++NIV MGMGEP  N ++V K++ I +   G     RR+T+STSG VP I R+ EE   V
Sbjct: 160 VTNIVFMGMGEPFLNEESVLKAVRILNSENGQKIGMRRMTISTSGVVPGIIRLAEENKQV 219

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LAISLH+  N LR+ILVP+NR+YPL+ L+ ACR Y      RR+T E + L   N +  
Sbjct: 220 GLAISLHSARNHLRDILVPMNRRYPLQQLMRACREYVN-QTGRRVTLE-IALTEANANKD 277

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
           +A  LI++++G+P  INLIP NP          ++ I+ F   ++    S  +R  +G D
Sbjct: 278 EAEALIRLIQGMPVHINLIPVNPVTESSMQRPAKEKIMEFKTLLEAKNLSVTVREEKGTD 337

Query: 358 ILAACGQLKS 367
           I AACGQL+ 
Sbjct: 338 IDAACGQLRQ 347


>gi|297584286|ref|YP_003700066.1| radical SAM enzyme, Cfr family [Bacillus selenitireducens MLS10]
 gi|297142743|gb|ADH99500.1| radical SAM enzyme, Cfr family [Bacillus selenitireducens MLS10]
          Length = 358

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 210/368 (57%), Gaps = 26/368 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K S+ G+   ELE+     G      + R  Q+W W+YV+ IRDF  M++I ++   L
Sbjct: 1   MNKTSIYGLTFNELEDWFEGKG----EKKFRAKQVWDWLYVKRIRDFDDMTNIKKDTISL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           +  HF +   E+  ++ S DGT+K+L +     +     IETV +      ++CV++QVG
Sbjct: 57  IKDHFYLESLELHSKQESKDGTKKFLFKLSDGNL-----IETVLMKFDYGNSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+LT+ EI+ Q+L  +  + D                 ++S+IV
Sbjct: 112 CNIGCSFCASGLLKKDRDLTSAEIVEQILKVQFDMDD------------KQTEERVSHIV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAIS 242
           +MG+GEP  N+DN+   L I +   GL+   R IT+STSG V  I A   E + V LA+S
Sbjct: 160 VMGIGEPFDNYDNLMSFLRIVNSDRGLAIGARHITVSTSGLVEKIRAFADENLQVNLAVS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ IN+  P+E ++ A  +Y   +N RRIT EY++L G+ND P  A  L
Sbjct: 220 LHAPNNDLRSSIMKINKGQPIEDVMSAIDYYLEKTN-RRITLEYILLDGVNDKPEHAKEL 278

Query: 303 IKILKGIP--AKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++++       INLIP+NP     +Y  S++  I+TF + + ++G    +R  +G DI 
Sbjct: 279 AELVRDKKKLTYINLIPYNPVDEYIQYKQSEKGAILTFYDLLMKNGVQCGVRHEQGSDID 338

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 339 AACGQLRS 346


>gi|76787054|ref|YP_329191.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           agalactiae A909]
 gi|123730855|sp|Q3K2R2|RLMN_STRA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|76562111|gb|ABA44695.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae A909]
          Length = 368

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 210/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    +   I     + R SQIW W+Y + ++ F  M++IS++   LLN
Sbjct: 11  KPSIYSLTRDEL----IAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 67  ENFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 119

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI  Q++L +          D  G      G ++S+IV
Sbjct: 120 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERVSHIV 167

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV K L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 168 VMGIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 227

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +PLE L  A  +Y   +N RR+TFEY+ML G+ND+P +A  L
Sbjct: 228 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDTPENAQEL 286

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 287 ADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDID 346

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 347 AACGQLRS 354


>gi|25010575|ref|NP_734970.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           agalactiae NEM316]
 gi|77413558|ref|ZP_00789746.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 515]
 gi|81588871|sp|Q8E6Q7|RLMN_STRA3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|23094928|emb|CAD46149.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160387|gb|EAO71510.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 515]
          Length = 368

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 210/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    +   I     + R SQIW W+Y + ++ F  M++IS++   LLN
Sbjct: 11  KPSIYSLTRDEL----IAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 67  ENFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQYYGLSVCVTTQVG 119

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI  Q++L +          D  G      G ++S+IV
Sbjct: 120 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERVSHIV 167

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV K L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 168 VMGIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 227

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +PLE L  A  +Y   +N RR+TFEY+ML G+ND+P +A  L
Sbjct: 228 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDTPENAQEL 286

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 287 ADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDID 346

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 347 AACGQLRS 354


>gi|157415935|ref|YP_001483191.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205829693|sp|A8FP27|RLMN_CAMJ8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157386899|gb|ABV53214.1| hypothetical protein C8J_1617 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748573|gb|ADN91843.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315931319|gb|EFV10288.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 356

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 139/352 (39%), Positives = 198/352 (56%), Gaps = 34/352 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++WIY +   +F  MS + + +R  L Q+F     + V  + S DG+ K+L   
Sbjct: 23  FRVKQIYQWIYQKYANNFSDMSSLPKYLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               + G + +E+V +P K             +R T+CVSSQVGC   CSFC T    L 
Sbjct: 83  ----VDG-LRVESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL+A EI+ Q+L  +            +   IP   R   NIV MGMGEPL N  NV K
Sbjct: 138 RNLSAGEIVGQILWIK------------KQNNIPYERR--VNIVYMGMGEPLDNLKNVSK 183

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I + + GL+ S RR T+STSG    I  +G+  +GV+LAISLHAV++ LR  L+PIN
Sbjct: 184 AVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDGLRTELMPIN 243

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y +  ++DA R +P +   +R+ FEY+++ GIND    A  L+K+L GI AK+NLI F
Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           NP  G  Y     ++ + F + +   G +  IR  +GLDI AACGQLK  +K
Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRESKGLDISAACGQLKERAK 354


>gi|152993941|ref|YP_001359662.1| ribosomal RNA large subunit methyltransferase N [Sulfurovum sp.
           NBC37-1]
 gi|205829910|sp|A6QCU6|RLMN_SULNB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|151425802|dbj|BAF73305.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 359

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 30/347 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R+ QI+ WIY +    F+ M ++ + +R  L+  +++   + V  + S DG+RK+L   
Sbjct: 24  FRSKQIYDWIYHKYAASFEEMKNLPKAMREELDAEYTLAPLKTVTVQDSMDGSRKYLFEL 83

Query: 93  PARCIGGPVEI-----------ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                G  VE            E   +  + R T+C+SSQVGC + C+FC T     +RN
Sbjct: 84  HD---GHTVEAVLLLMRDKEYHEDGSVKHQERYTVCISSQVGCKVGCAFCLTAKGGFMRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           LTA EI+ Q+ + +          DI      +  R++ NIV MGMGEPL N + V KS+
Sbjct: 141 LTAGEIVEQLRMIKK-------DNDI------AANRRV-NIVFMGMGEPLDNLEAVAKSV 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRK 260
            I ++  G++ +  R T+STSG    I ++G+ E+GV LAISLHAV ++LR  L+PIN+ 
Sbjct: 187 KIFAEEEGMAIAPHRQTISTSGLSSKIEKLGKMELGVNLAISLHAVDDELRQQLMPINKA 246

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +I A +++P +++ +R+ FEY+++K +ND    A  L+ +L GI AK+NLI FNP
Sbjct: 247 YNIESIITAVKNFP-VNDRKRVMFEYLVIKDVNDDISAAKKLLSLLDGIKAKVNLIYFNP 305

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           + G E+    + D+  F E + + G    IR  +GLDI AACGQL+ 
Sbjct: 306 YGGTEFKRPSEADMKKFQEYLTKRGLHCTIRESKGLDISAACGQLRE 352


>gi|27467811|ref|NP_764448.1| hypothetical protein SE0893 [Staphylococcus epidermidis ATCC 12228]
 gi|251810648|ref|ZP_04825121.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876350|ref|ZP_06285217.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis SK135]
 gi|293366817|ref|ZP_06613493.1| cfr family radical SAM enzyme [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81843839|sp|Q8CSW0|RLMN_STAES RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|27315355|gb|AAO04490.1|AE016746_280 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|251805808|gb|EES58465.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295375|gb|EFA87902.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis SK135]
 gi|291319118|gb|EFE59488.1| cfr family radical SAM enzyme [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329736269|gb|EGG72541.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
           VCU028]
 gi|329736607|gb|EGG72873.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
           VCU045]
          Length = 364

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 209/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
            +K+S+  +  +E+++ L+  G      + R  QI++W+Y + +     M+++S+E+R +
Sbjct: 16  FEKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQI 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  HF++     V ++ S DGT K+L       +     IETV +  +   ++CV++QVG
Sbjct: 72  LKDHFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH   +++R+ L+PINR Y ++ L++A R+Y   +N RR+TFEY +  G+ND    A +L
Sbjct: 233 LHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTN-RRVTFEYGLFGGVNDQLEHARDL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|329729989|gb|EGG66380.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
           VCU144]
          Length = 364

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 209/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
            +K+S+  +  +E+++ L+  G      + R  QI++W+Y + +     M+++S+E+R +
Sbjct: 16  FEKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQI 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  HF++     V ++ S DGT K+L       +     IETV +  +   ++CV++QVG
Sbjct: 72  LKDHFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH   +++R+ L+PINR Y ++ L++A R+Y   +N RR+TFEY +  G+ND    A +L
Sbjct: 233 LHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTN-RRVTFEYGLFGGVNDQLEHARDL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|77408383|ref|ZP_00785123.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae COH1]
 gi|77172986|gb|EAO76115.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae COH1]
          Length = 368

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 210/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    +   I     + R SQIW W+Y + ++ F  M++IS++   LLN
Sbjct: 11  KPSIYSLTRDEL----IAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 67  ENFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQYYGLSVCVTTQVG 119

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI  Q++L +          D  G      G ++S+IV
Sbjct: 120 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERVSHIV 167

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV K L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 168 VMGIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 227

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +PLE L  A  +Y   +N RR+TFEY+ML G+ND+P +A  L
Sbjct: 228 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDTPENAQEL 286

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 287 ADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDID 346

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 347 AACGQLRS 354


>gi|86140644|ref|ZP_01059203.1| hypothetical protein MED217_15870 [Leeuwenhoekiella blandensis
           MED217]
 gi|85832586|gb|EAQ51035.1| hypothetical protein MED217_15870 [Leeuwenhoekiella blandensis
           MED217]
          Length = 347

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 205/362 (56%), Gaps = 26/362 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           ++ +  + REEL +      + Q     R +Q+++W++V+G   F  M++IS+E R  L+
Sbjct: 5   QKDIRALSREELRDFF----VSQGEKAFRGNQVYEWLWVKGAHSFDDMTNISKETRAFLD 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I + ++   + S DGT K  ++     +   + +E+V IP  SR T CVSSQVGCS
Sbjct: 61  EHFVINHIKVDQMQRSSDGTIKNAVK-----LHDNLTVESVLIPTASRITACVSSQVGCS 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T   K +RNL  +EI  QV+              I+        R +SNIV M
Sbjct: 116 LNCKFCATARLKRMRNLNPDEIFDQVVA-------------IDQQSRLYHNRPLSNIVFM 162

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISL 243
           GMGEPL N+ NV KS+   +D  GL  S +RIT+STSG VP I +    +E+   LA+SL
Sbjct: 163 GMGEPLMNYKNVVKSIEKITDPEGLGMSPKRITVSTSG-VPKIIKKMADDEVKFNLAVSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  +D+R  ++P N + PL+ L +A +++  +   +RIT+EYV+ +GIND  +D   LI
Sbjct: 222 HSALDDVRTDIMPFNEQMPLQELKEALQYW-YVKTKKRITYEYVVWRGINDQDKDIEALI 280

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
                +P+K+NLI +NP    ++  +D   I  +   ++  G +  +R  RG DI AACG
Sbjct: 281 DFCLAVPSKVNLIEYNPIDDGQFQQADPLAIDRYVAKLEDRGITVTVRRSRGKDIDAACG 340

Query: 364 QL 365
           QL
Sbjct: 341 QL 342


>gi|57866756|ref|YP_188367.1| radical SAM protein [Staphylococcus epidermidis RP62A]
 gi|242242500|ref|ZP_04796945.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis W23144]
 gi|81674923|sp|Q5HPX3|RLMN_STAEQ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|57637414|gb|AAW54202.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis RP62A]
 gi|242234074|gb|EES36386.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis W23144]
          Length = 364

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 209/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
            +K+S+  +  +E+++ L+  G      + R  QI++W+Y + +     M+++S+E+R +
Sbjct: 16  FEKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQI 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  HF++     V ++ S DGT K+L       +     IETV +  +   ++CV++QVG
Sbjct: 72  LKDHFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH   +++R+ L+PINR Y ++ L++A R+Y   +N RR+TFEY +  G+ND    A +L
Sbjct: 233 LHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTN-RRVTFEYGLFGGVNDQLEHARDL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|255693933|ref|ZP_05417608.1| radical SAM enzyme, Cfr family [Bacteroides finegoldii DSM 17565]
 gi|260620244|gb|EEX43115.1| radical SAM enzyme, Cfr family [Bacteroides finegoldii DSM 17565]
          Length = 344

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/365 (36%), Positives = 200/365 (54%), Gaps = 31/365 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MSKYPLLGMTLVELQALAKRLGMPS----FAAKQIASWLYEKKVTSIDEMTNLSLKHREL 56

Query: 64  LNQHFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L Q++ + ++P  VDE  S DGT K+L R     +G    +E+VYIP+  R TLCVSSQV
Sbjct: 57  LKQNYEVGVFPP-VDEMRSVDGTVKYLYR-----VGDNHFVESVYIPDDDRATLCVSSQV 110

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG Q    NLTA +I+ Q+                    +P    K++N+
Sbjct: 111 GCKMNCKFCMTGKQGFTANLTANQIINQI------------------HSLPERD-KLTNV 151

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N D V K+L + +   G ++S +RITLST G    + R  EE    LAIS
Sbjct: 152 VMMGMGEPLDNLDEVLKALEVLTAPYGYAWSPKRITLSTVGLRKGLRRFIEESDCHLAIS 211

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+     R+ L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L
Sbjct: 212 LHSPVAAQRSELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQIYAKEL 270

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K+L+G+  +INLI F+  PG     +D   +  F + +   G  + IR  RG DI AAC
Sbjct: 271 LKLLRGLDCRINLIRFHAIPGVNLEGADMDTMTRFRDYLTSHGLFTTIRASRGEDIFAAC 330

Query: 363 GQLKS 367
           G L +
Sbjct: 331 GMLST 335


>gi|213963853|ref|ZP_03392101.1| radical SAM enzyme, Cfr family [Capnocytophaga sputigena Capno]
 gi|213953533|gb|EEB64867.1| radical SAM enzyme, Cfr family [Capnocytophaga sputigena Capno]
          Length = 350

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 203/364 (55%), Gaps = 26/364 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  +  + +EEL       G        R +Q+++W++ +G+  F+ M+ + +  R +
Sbjct: 2   MQKRDIRALTKEELRTFFESNG----DKAFRGNQVYEWLWQKGVHTFEAMTSLPKATREM 57

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +HFSI + ++   + S DGT K  +R     +     +E+V IP  +R T CVSSQVG
Sbjct: 58  LAEHFSINHIKVDVMQRSNDGTIKNAVRLHDGLL-----VESVLIPTDTRTTACVSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL CSFC T   K +RNL  +EI  QV +             I+       GR +SNIV
Sbjct: 113 CSLNCSFCATARLKRMRNLLPDEIFDQVKV-------------IDEQSRAFFGRPLSNIV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
            MGMGEPL N++NV K++   +   GL  S +RITLSTSG    I ++ + E+   LA+S
Sbjct: 160 FMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTSGIPKLIKKMADDEVKFKLAVS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRH-YPGLSNARRITFEYVMLKGINDSPRDALN 301
           LH+    +R  ++P N ++PLE L DA  + Y    N  RIT+EYV+ KGIND  +D   
Sbjct: 220 LHSAIGSVRTGIMPFNEQFPLEELRDALAYWYQKTKN--RITYEYVVWKGINDQKKDVEA 277

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           LIK  K  P+K+NLI +NP    ++  +D K +  +   ++ +G +  +R  RG DI AA
Sbjct: 278 LIKFCKFAPSKVNLIEYNPIDDGDFQQADPKALELYQTMLEAAGITVTVRHSRGKDIDAA 337

Query: 362 CGQL 365
           CGQL
Sbjct: 338 CGQL 341


>gi|163782714|ref|ZP_02177710.1| hypothetical protein HG1285_15301 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881835|gb|EDP75343.1| hypothetical protein HG1285_15301 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 349

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 140/358 (39%), Positives = 197/358 (55%), Gaps = 33/358 (9%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL E  + +G+     + R  Q+ KW+Y +   DF  M+D+ +E R LL   F     E
Sbjct: 10  EELRERFVSLGLE----KYRAGQVLKWLYKKLTTDFSSMTDLPKEQRRLLEDTFRFHPLE 65

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
            +D ++    +RK+L R     I     +ETV I E+   TLCVSSQVGC++ C+FC T 
Sbjct: 66  KLD-RVDAPDSRKYLFRTHDGHI-----VETVLIRERDHLTLCVSSQVGCAVGCTFCATA 119

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNLT+ EIL Q L  +    D P               KI N+V MGMGEPL N+
Sbjct: 120 IDGLRRNLTSAEILDQFLQVQK---DSP--------------EKIRNVVFMGMGEPLANY 162

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLAISLHAVSNDLR 251
           DNV+K+  I     GL  SKRR+T+STSG V  + R+ E+     + LA+SL+A     R
Sbjct: 163 DNVRKAAEIMVSPWGLDLSKRRVTVSTSGLVAQLRRMAEDPIMRELNLAVSLNAPRQSTR 222

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             ++PI RK  L  L++    YP L   RRIT EYV++K +NDS RDA  L ++L+    
Sbjct: 223 ESIMPITRKNTLSELMEVLVKYP-LPRYRRITLEYVLIKDLNDSKRDAEELAELLRRHRK 281

Query: 312 --KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             K+NLIPFNP P   Y   +   ++ F + +   G S+ +R  +G+D+  ACGQL++
Sbjct: 282 RFKVNLIPFNPDPNLPYERPELTRVLNFQKVLWERGISTFVRFSKGVDVFGACGQLRA 339


>gi|302389594|ref|YP_003825415.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani
           DSM 16646]
 gi|302200222|gb|ADL07792.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani
           DSM 16646]
          Length = 346

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 217/368 (58%), Gaps = 36/368 (9%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L GM  EEL++ ++ +G P      R  QI++WIY +G+ DF+ M+D+ + +   
Sbjct: 1   MAKTNLKGMTVEELQDFIVSLGEPP----YRARQIFRWIY-KGVTDFEKMTDLPRTLVEK 55

Query: 64  LNQHFSI----IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           L +   I    IY +    K   D T K+L       I     IE+V +      ++CVS
Sbjct: 56  LKELSYIDKIGIYKKFQSRK---DATVKYLFLLSDNNI-----IESVKMEHSYGVSVCVS 107

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC++ C+FC +    L R+L + E++ Q+L+ +         EDI+        ++I
Sbjct: 108 SQVGCAMGCAFCASTIDGLKRSLNSGEMVDQILVIQ---------EDIK--------KRI 150

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           S++V+MG GEPL N+D + K L+I +  +  + S RRIT+ST G VP I R+ +E + + 
Sbjct: 151 SHVVIMGSGEPLLNYDELIKFLNIINSPLAFNISYRRITVSTCGIVPEIRRLADEGLPIT 210

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           L++SLHA  +DLR+ LVP+NR+YP+  L+DAC++Y   +N RRITFEY ++  +NDS   
Sbjct: 211 LSVSLHAPEDDLRDKLVPVNRRYPILELLDACKYYIIKTN-RRITFEYALISDVNDSKEC 269

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A+ L ++LKG+   +NLIP NP    +++ S  ++I  F E ++  G S  +R   G DI
Sbjct: 270 AVKLARLLKGLLCHVNLIPLNPVRERDFMRSKPENIRLFQEILRHYGISVTVRQEMGADI 329

Query: 359 LAACGQLK 366
            AACGQL+
Sbjct: 330 EAACGQLR 337


>gi|237715676|ref|ZP_04546157.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408684|ref|ZP_06085230.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294807293|ref|ZP_06766107.1| radical SAM enzyme, Cfr family [Bacteroides xylanisolvens SD CC 1b]
 gi|299148689|ref|ZP_07041751.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_23]
 gi|229444385|gb|EEO50176.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353549|gb|EEZ02643.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294445591|gb|EFG14244.1| radical SAM enzyme, Cfr family [Bacteroides xylanisolvens SD CC 1b]
 gi|298513450|gb|EFI37337.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_23]
          Length = 344

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 199/364 (54%), Gaps = 29/364 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     VDE  S DGT K+L +     +G    +E+VYIP+  R TLCVSSQVG
Sbjct: 57  LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                    +P    K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIMNQI------------------HSLPERD-KLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L + + + G ++S +RITLST G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R  L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +D   +  F + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKS 367
            L +
Sbjct: 332 MLST 335


>gi|332880555|ref|ZP_08448229.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681543|gb|EGJ54466.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 344

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 200/366 (54%), Gaps = 29/366 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM   EL+    +IG+P    R    Q+ +W+Y + +     M++IS + R LLN
Sbjct: 4   KIALLGMTLAELKAVAGEIGMPSFAAR----QMAEWLYGKKVASIDEMTNISAKNRRLLN 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + +++     VD + S DGT K+L R  A   GG VE  TVYIP+  R TLCVSSQVGC 
Sbjct: 60  ERYTVGCAAPVDGQRSADGTVKYLYRTAA---GGYVE--TVYIPDGDRATLCVSSQVGCR 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q     LTA +IL Q+                    +P     ++N+V M
Sbjct: 115 MNCRFCMTGKQGFSGQLTAADILNQL------------------YSLPERD-TLTNVVFM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEPL N DNV ++  I +   G ++S +RIT+ST G    + R  +E    LA+SLH 
Sbjct: 156 GQGEPLDNLDNVLRATEILTADYGYAWSPKRITVSTVGLRKGLKRFLDESECHLAVSLHN 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              D R +L+P    Y L  ++   R Y   ++ RR++FEY M +G+ND+P  A  L+++
Sbjct: 216 PFADQRALLMPAENSYGLREIVALLREYD-FTHQRRLSFEYTMFEGVNDTPAHAKELLRL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L G+  ++NLI F+P PG +   + ++ ++ F + +   G  S IR  RG DI AACG L
Sbjct: 275 LDGLECRMNLIRFHPVPGVDLKGTSEEGMLRFRDYLTGHGLFSTIRASRGQDIFAACGLL 334

Query: 366 KSLSKR 371
            +  ++
Sbjct: 335 STAKQQ 340


>gi|315635461|ref|ZP_07890727.1| cfr family radical SAM enzyme [Arcobacter butzleri JV22]
 gi|315480219|gb|EFU70886.1| cfr family radical SAM enzyme [Arcobacter butzleri JV22]
          Length = 360

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 128/343 (37%), Positives = 195/343 (56%), Gaps = 24/343 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q++ W+Y +    +  M ++ +E+   L +++ I   +IV ++ S DG+ K+L + 
Sbjct: 25  FRAKQVYNWLYKKYASSYDEMKNLPKELVEDLKENYPIDIMQIVKKEQSRDGSIKYLFKL 84

Query: 93  PARCIGGPVEI--------ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
                   V +        E   I    + T+C+SSQVGC + CSFC T     VRNLT 
Sbjct: 85  RDNHTVEAVLLLMKDKKIDEDGQIVRSEKYTVCISSQVGCKVGCSFCLTAKGGFVRNLTV 144

Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
            E + Q++       +     DI          K  NIV MGMGEPL NFDN  K++ I 
Sbjct: 145 GEYIAQIV-------NIKRDNDI-------AENKALNIVYMGMGEPLDNFDNFTKAVEIF 190

Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPL 263
           S+  GL+ S+RR T+STSG    I ++GE ++ + LAISLHAV ++LR+ L+P+N+ Y +
Sbjct: 191 SELDGLAISRRRQTVSTSGIATKIKKLGEKDLQIQLAISLHAVDDELRSELIPMNKAYNI 250

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
             +I+A + +P +   +++ FEY+++K  NDS   A  L+ +L GI AK+NLI FNP+PG
Sbjct: 251 ASIIEAVKAFP-VDTRKKVMFEYLVIKDKNDSIEAAKKLVSLLNGIQAKVNLIYFNPYPG 309

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             Y    +KD++ F + + + G    IR  +GLDI AACGQLK
Sbjct: 310 TSYQRPQEKDMLKFKDFLNQKGVICTIRESKGLDISAACGQLK 352


>gi|293370817|ref|ZP_06617362.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CMC 3f]
 gi|298481513|ref|ZP_06999705.1| radical SAM enzyme, Cfr family [Bacteroides sp. D22]
 gi|292634033|gb|EFF52577.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CMC 3f]
 gi|295086976|emb|CBK68499.1| 23S rRNA m(2)A-2503 methyltransferase [Bacteroides xylanisolvens
           XB1A]
 gi|298272377|gb|EFI13946.1| radical SAM enzyme, Cfr family [Bacteroides sp. D22]
          Length = 344

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 199/364 (54%), Gaps = 29/364 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     VDE  S DGT K+L +     +G    +E+VYIP+  R TLCVSSQVG
Sbjct: 57  LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                    +P    K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI------------------HSLPERD-KLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L + + + G ++S +RITLST G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R  L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +D   +  F + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKS 367
            L +
Sbjct: 332 MLST 335


>gi|153809258|ref|ZP_01961926.1| hypothetical protein BACCAC_03570 [Bacteroides caccae ATCC 43185]
 gi|149128028|gb|EDM19249.1| hypothetical protein BACCAC_03570 [Bacteroides caccae ATCC 43185]
          Length = 344

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 199/364 (54%), Gaps = 29/364 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MSKYPLLGMTLVELQSLAKRLGMPG----FAAKQIASWLYDKKVASIDEMTNLSLKYREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     VDE  S DGT K+L +     +G    +E+VYIP+  R TLCVSSQVG
Sbjct: 57  LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                    +P    K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYKANLTASQIINQI------------------HSLPERD-KLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V ++L I +   G ++S +RITLST G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLQALEIMTADYGYAWSPKRITLSTVGLRKGLKRFIEESDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R+ L+P  + Y +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPLAVQRSELMPAEKGYSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  +INLI F+  PG +   +D   +  F + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRINLIRFHAIPGVDLEGADMDTMTRFRDYLTTHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKS 367
            L +
Sbjct: 332 MLST 335


>gi|333031476|ref|ZP_08459537.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
           coprosuis DSM 18011]
 gi|332742073|gb|EGJ72555.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
           coprosuis DSM 18011]
          Length = 344

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 197/371 (53%), Gaps = 29/371 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+ L+GM   EL+  + + G+P    +    QI  W+Y + + +   M+++S++ R L
Sbjct: 3   MDKKPLLGMTLSELQVLVSQAGLP----KFTAKQIASWLYKKKVTNIDEMTNLSKKNRDL 58

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           LNQ +++     +    S DGT K+L       +G    IE+VYIP++ R TLCVSSQVG
Sbjct: 59  LNQEYTVGAANPIQAVKSVDGTIKYLF-----SVGDKNSIESVYIPDEDRATLCVSSQVG 113

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NL+A +IL Q+                    IP     ++NIV
Sbjct: 114 CKMNCLFCMTGKQGFSGNLSANQILNQI------------------QTIPE-SDTLTNIV 154

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEP+ N D V K L I +   G  +S +RIT+ST G      R  +E    LA+S+
Sbjct: 155 FMGMGEPMDNLDEVLKVLEILTSDYGYKWSPKRITVSTVGVRKGFERFLQESDCHLAVSI 214

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H      R  L+P  +  P+  +++  R Y   S  RR++FEY+M KG+NDS   A  L+
Sbjct: 215 HTPIASQRKDLMPAEKGLPISEIVNILRDYD-FSKQRRLSFEYIMFKGVNDSISHAKKLL 273

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L G+  ++NLI F+  P  +   SD + +  F + + ++G  + IR  RG DI AACG
Sbjct: 274 ELLDGLECRVNLIRFHAIPNVDLNGSDMETMTVFRDYLTKNGVFTTIRASRGEDIFAACG 333

Query: 364 QLKSLSKRIPK 374
            L ++ K   K
Sbjct: 334 MLSTMEKNKNK 344


>gi|319401489|gb|EFV89699.1| radical SAM superfamily protein [Staphylococcus epidermidis FRI909]
          Length = 364

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 208/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
            +K+S+  +  +E+++ L+  G      + R  QI++W+Y + +     M+++S+E+R  
Sbjct: 16  FEKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQT 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  HF++     V ++ S DGT K+L       +     IETV +  +   ++CV++QVG
Sbjct: 72  LKDHFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH   +++R+ L+PINR Y ++ L++A R+Y   +N RR+TFEY +  G+ND    A +L
Sbjct: 233 LHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTN-RRVTFEYGLFGGVNDQLEHARDL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|313159155|gb|EFR58530.1| 23S rRNA m2A2503 methyltransferase [Alistipes sp. HGB5]
          Length = 379

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 129/363 (35%), Positives = 191/363 (52%), Gaps = 29/363 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+L G   E+L     ++G+P    R    Q+ +W+Y + + D   MSDI+   R  L +
Sbjct: 41  ETLYGKTPEQLAAVCAELGMP----RFAAKQLARWLYAKHVEDPMRMSDIAAAHRAKLAE 96

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F   +        S DGT+K+L R           IE+ YIP+  R TLCVSSQ GC +
Sbjct: 97  RFRPAFTPPARITESADGTKKYLYR-----TQQGAWIESAYIPDGERATLCVSSQAGCRM 151

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q L  +LT  EIL Q++                   +P     ++N+V MG
Sbjct: 152 GCKFCATGRQGLQHSLTTAEILNQIV------------------SLPERD-SLTNVVFMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N DNV ++L I +   G  +S  RITLST+G  P + R  +   V LA+SLH  
Sbjct: 193 MGEPLDNTDNVLRALEIMTSEWGFGWSPTRITLSTAGVAPELQRFLDATKVHLAVSLHNP 252

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++ R  ++P+ R +P+  +    R Y   ++ RR++FEY+++ G+NDSPR    L ++L
Sbjct: 253 FHEERAAIMPVERAWPIAEVAAILRRY-DFTHQRRVSFEYIVMSGLNDSPRHIRELCRLL 311

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            GI  +INLI F+  PG  +   D + ++ F + +   G  + IR  RG DI AACG L 
Sbjct: 312 DGIKCRINLIRFHKIPGSPFFSPDDEAMIRFRDTLTAKGIQTTIRASRGEDIQAACGLLS 371

Query: 367 SLS 369
           + +
Sbjct: 372 TAA 374


>gi|294646654|ref|ZP_06724280.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CC 2a]
 gi|292637993|gb|EFF56385.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CC 2a]
          Length = 382

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 199/364 (54%), Gaps = 29/364 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 39  MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 94

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     VDE  S DGT K+L +     +G    +E+VYIP+  R TLCVSSQVG
Sbjct: 95  LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 149

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                    +P    K++N+V
Sbjct: 150 CKMNCKFCMTGKQGYTANLTASQIMNQI------------------HSLPERD-KLTNVV 190

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L + + + G ++S +RITLST G    + R  EE    LAISL
Sbjct: 191 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 250

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R  L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 251 HSPLTVQRAELMPAEKAFSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 309

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +D   +  F + +   G  + IR+ RG DI AACG
Sbjct: 310 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 369

Query: 364 QLKS 367
            L +
Sbjct: 370 MLST 373


>gi|225011596|ref|ZP_03702034.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-2A]
 gi|225004099|gb|EEG42071.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-2A]
          Length = 358

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 208/362 (57%), Gaps = 26/362 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +  + +EEL+E  +  G P      +  Q+++W++ +G+ DF+ M+++S   R+LL+
Sbjct: 14  KKDIRALSKEELQEFFVSQGAPS----FKGGQVYQWLWQKGVHDFELMTNLSLTHRNLLD 69

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HF I +  I  ++ S DGT K  ++     +     +E+V IP  +R T CVSSQVGCS
Sbjct: 70  AHFEIKHINIDFQQRSTDGTIKNAVKLHDNLV-----VESVLIPTSTRTTACVSSQVGCS 124

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T   K +RNL A+EI  QV+             D +  +     R +SNIV M
Sbjct: 125 LDCTFCATAALKRMRNLNADEIYDQVV-----------AMDQQSKLYHQ--RPLSNIVFM 171

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISL 243
           GMGEPL N++NV  ++   +D+  L  S RRITLSTSG +P + R    +++   LA+SL
Sbjct: 172 GMGEPLMNYNNVLAAIEKITDTEALGMSPRRITLSTSG-IPKLIRKMADDKVKFGLAVSL 230

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+   ++R  ++P  +K+PL  LI++  ++   +  ++ITFEYV+ +G+ND   D   L+
Sbjct: 231 HSARQEVRERIMPFAKKFPLTELIESLEYWYAYTK-KQITFEYVVWEGVNDLKEDIQALV 289

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            + + IP+K+N+I +NP  G      +Q  I  +   + ++  S   R  RG+DI AACG
Sbjct: 290 GLCRRIPSKVNIIQYNPIDGSSMKQGNQTVIDAYIAALTKARISVTYRRSRGVDIDAACG 349

Query: 364 QL 365
           QL
Sbjct: 350 QL 351


>gi|253575779|ref|ZP_04853114.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844822|gb|EES72835.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 348

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 129/354 (36%), Positives = 199/354 (56%), Gaps = 25/354 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL+E  +  G P      R  QI+ W+YV+ +  F  M+++S+ +R  L   F+ +  +
Sbjct: 11  EELQEWAVSQGEPA----FRGGQIFDWLYVKRVSSFDEMTNLSKALRQKLADEFAFVTLQ 66

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
            + +  S DGT K+L       +     IETV +      ++CV++QVGC + C+FC + 
Sbjct: 67  EITKLESKDGTVKFLF-----GLHDDHAIETVIMKHNYGNSICVTTQVGCKVGCTFCAST 121

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNLT  EI+ QV+ A+ +L               + G ++S+IV+MG GEP  N+
Sbjct: 122 LGGLKRNLTPGEIVAQVVQAQKIL--------------DAKGERVSSIVIMGTGEPFENY 167

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
           D   K L I     GL+  +R IT+STSG VPNI R  +E   + LAIS+HA ++ LR+ 
Sbjct: 168 DATMKFLRIMIHEKGLNIGQRHITVSTSGIVPNIYRFADENTQINLAISIHAPNDALRSK 227

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           L+P+NR++P + +++A R+Y      RRITFEY ++ G+ND P  A  L  ++K +   +
Sbjct: 228 LMPVNRRFPFDDVMEALRYYIA-KTGRRITFEYALIGGVNDQPEHAEELADVIKDMLCHV 286

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           NLIP N  P  +Y+ + + DI  F   +   G +  IR  +G DI AACGQL++
Sbjct: 287 NLIPVNYVPERKYVRTSRNDIFKFQRILADKGINVTIRREQGHDIAAACGQLRA 340


>gi|193215236|ref|YP_001996435.1| radical SAM enzyme, Cfr family [Chloroherpeton thalassium ATCC
           35110]
 gi|254807164|sp|B3QS43|RLMN_CHLT3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|193088713|gb|ACF13988.1| radical SAM enzyme, Cfr family [Chloroherpeton thalassium ATCC
           35110]
          Length = 369

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 142/356 (39%), Positives = 192/356 (53%), Gaps = 29/356 (8%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII----YPE 74
           EAL+ +         R  QI+ WIY  G+ DF  M ++S   + LL+QHF++     + +
Sbjct: 14  EALMALINSYGQPAFRAKQIFHWIYAHGVTDFAQMKNLSASFQTLLSQHFTVSSIQPHAD 73

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGCSLTCSFCY 132
            V  +I+ + T K+L R     +     IE+V+IP  S  R TLC+SSQVGC+  C FC 
Sbjct: 74  TVSHEITPEQTVKFLFR-----LSDEQSIESVFIPSDSTSRNTLCISSQVGCAFACKFCA 128

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           TG    +RNLT  EIL QVL     LGD               G KI+N+V MGMGEPL 
Sbjct: 129 TGYMGFIRNLTIGEILDQVLWVNRWLGD-------------QRGGKITNVVFMGMGEPLA 175

Query: 193 NFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDL 250
           NFDN   ++ I ++       S R+IT+ST GF+P I R +   I   LAISLH+    +
Sbjct: 176 NFDNCLAAIRILTNPDYAFQISTRKITVSTVGFIPGIQRLIDTGINCKLAISLHSAHQAI 235

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R  L+PI ++Y L  L      Y   +  + ITFEY ++  INDS +DA+ L K  KGI 
Sbjct: 236 REELIPIAKEYSLATLKAILTRY-NQAYKQPITFEYSLIHKINDSEQDAILLSKFCKGIN 294

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTF-SECIKRSGYSSPIRTPRGLDILAACGQL 365
            KINLI +N     +YL S +     F  +CI+  G +  +R  RG DI AACGQL
Sbjct: 295 CKINLIDYNSVDNIDYLPSPEGHKQAFIRKCIEH-GLTVTVRKSRGADIQAACGQL 349


>gi|160887188|ref|ZP_02068191.1| hypothetical protein BACOVA_05204 [Bacteroides ovatus ATCC 8483]
 gi|156107599|gb|EDO09344.1| hypothetical protein BACOVA_05204 [Bacteroides ovatus ATCC 8483]
          Length = 344

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 199/364 (54%), Gaps = 29/364 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     VDE  S DGT K+L +     +G    +E+VYIP+  R TLCVSSQVG
Sbjct: 57  LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                    +P    K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI------------------HSLPERD-KLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L + + + G ++S +RITLST G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R  L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +D   +  F + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDNLTSHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKS 367
            L +
Sbjct: 332 MLST 335


>gi|317129257|ref|YP_004095539.1| radical SAM enzyme, Cfr family [Bacillus cellulosilyticus DSM 2522]
 gi|315474205|gb|ADU30808.1| radical SAM enzyme, Cfr family [Bacillus cellulosilyticus DSM 2522]
          Length = 362

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 132/364 (36%), Positives = 200/364 (54%), Gaps = 25/364 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K S+  +  EEL + +  IG      + R  QI+ W+YV+ +  F+ M+++S+++RH L
Sbjct: 14  EKPSIYSLTYEELIQWIEGIG----ESKFRAKQIFDWLYVKRVTSFEEMTNLSKDLRHNL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              +SI     +  + S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 70  ANEYSITTLSTITNQTSKDGTIKFLFELQ-----DGYSIETVVMRHEYGNSVCVTTQVGC 124

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC +    L RNL A EI+ QVL A+  L D                 ++ ++V+
Sbjct: 125 RLGCTFCASTLGGLKRNLEAGEIVAQVLKAQQFLDD--------------TDERVDSVVV 170

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D + + L   +   GL+   R IT+STSG VP I +  +E + +  AISL
Sbjct: 171 MGIGEPFDNYDELIRFLKTINHDNGLNIGARHITVSTSGVVPKIYQFADENMQINFAISL 230

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA   + R  L+PINR YP++ L+DA R+Y   +N RRITFEY +  G+NDS  DA  L 
Sbjct: 231 HAAKTETRTRLMPINRAYPIDKLMDAIRYYIKKTN-RRITFEYGLFGGVNDSIEDAELLA 289

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K I   +NLIP N      Y+ + ++ I  F   +K    +  IR  +G DI AACG
Sbjct: 290 DLIKDIKCHVNLIPVNDVLERNYVRTPKEQIFAFERALKNRDINVTIRREQGHDIDAACG 349

Query: 364 QLKS 367
           QL++
Sbjct: 350 QLRA 353


>gi|284047696|ref|YP_003398035.1| radical SAM enzyme, Cfr family [Acidaminococcus fermentans DSM
           20731]
 gi|283951917|gb|ADB46720.1| radical SAM enzyme, Cfr family [Acidaminococcus fermentans DSM
           20731]
          Length = 353

 Score =  228 bits (582), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 137/366 (37%), Positives = 200/366 (54%), Gaps = 28/366 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ ++G+  EEL+  L  +G+     + R  Q+++W+Y +   DF  MS++S++ R  L 
Sbjct: 3   KKEIMGLTLEELQTELAGLGMK----KFRAEQVFRWLYEKAATDFSQMSNLSKDARQQLA 58

Query: 66  QHFSIIYPEI--VDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
             ++I   ++  + E  S DG T K LL      +     +ETV +      ++C+SSQV
Sbjct: 59  DRYTIATAQVKVLKEYRSRDGLTHKVLLE-----LTDGATVETVLMHHDYGYSVCLSSQV 113

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C+FC +G    VRNLTA EIL Q+   +S  G  PG            G ++S I
Sbjct: 114 GCAMNCAFCASGLHGFVRNLTAAEILAQLYFFQS--GLQPG------------GERVSRI 159

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241
           V+MG GEP+ N DNV K+L I     G     R +T+ST G VP I  +  +   + LAI
Sbjct: 160 VVMGSGEPMLNLDNVLKALDILHSDRGQCIGYRNMTVSTCGVVPGIQELTAQGRNINLAI 219

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH  S +LRN L+PINRKYP   +I A   Y   SN R++ +EY++L GIND P DA N
Sbjct: 220 SLHGASQELRNRLMPINRKYPFPEVIQAADAYEK-SNGRQVMYEYILLAGINDRPEDARN 278

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L   L+     INLIP NP P   +     + +  F + +K+   +  +R   G DI AA
Sbjct: 279 LADALEHKECVINLIPANPVPEKGFERPSDRAVDRFFQMLKKRRLNVTVRKEMGKDINAA 338

Query: 362 CGQLKS 367
           CGQL++
Sbjct: 339 CGQLRA 344


>gi|283953675|ref|ZP_06371206.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794716|gb|EFC33454.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 356

 Score =  228 bits (582), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 137/348 (39%), Positives = 197/348 (56%), Gaps = 34/348 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++WIY +   +F  MS + +++R  L Q+F     + V  + S D + K+L   
Sbjct: 23  FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDRSIKYLFEL 82

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               I G + +E+V +P K             +R T+CVSSQVGC  +CSFC T    L 
Sbjct: 83  ----IDG-LRVESVLLPMKEEKIDEKGKRISHARYTICVSSQVGCKSSCSFCLTAKGGLK 137

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL+A EI+ Q+L  +                IP   R   NIV MGMGEPL N  NV K
Sbjct: 138 RNLSAGEIVGQILWIKKQNN------------IPYERR--VNIVYMGMGEPLDNLKNVSK 183

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I + + GL+ S RR T+STSG    I  +G+  +G++LAISLHAV+++LR  L+PIN
Sbjct: 184 AVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGILLAISLHAVNDELRTELMPIN 243

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y +  ++DA R +P +   +R+ FEY+++ GIND    A  L+K+L GI AK+NLI F
Sbjct: 244 KAYNIAAIMDAVREFP-IVQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           NP  G  Y     ++ + F + +   G +  IR  +GLDI AACGQLK
Sbjct: 303 NPHEGSIYKRPSLENAIKFQDLLSSKGVTCTIRESKGLDISAACGQLK 350


>gi|24379004|ref|NP_720959.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           mutans UA159]
 gi|81588375|sp|Q8DVG8|RLMN_STRMU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|24376896|gb|AAN58265.1|AE014897_11 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 361

 Score =  228 bits (582), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 211/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R +L    +   I     + R +QIW W+Y + ++ F+ M+++S++   LLN
Sbjct: 2   KPSIYSLTRNDL----IAWTIEHGEKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  ENFLVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI  Q++L +          D  G      G +IS++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERISHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYDNVLKFLRTINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +PLE L  A  +Y   +N RR+TFEY+ML G+NDSP +A  L
Sbjct: 219 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDSPENAQEL 277

Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|332702335|ref|ZP_08422423.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552484|gb|EGJ49528.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 362

 Score =  228 bits (582), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 128/338 (37%), Positives = 188/338 (55%), Gaps = 15/338 (4%)

Query: 29  RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88
           R  R R  Q+W+W++ +G+ DF+ MS++S+ +R  L +H  I  P I   + S DGT K+
Sbjct: 23  REPRFRAEQVWQWMWQKGVSDFEEMSNVSKALRGKLAEHAVIRPPTIDTVRESDDGTVKF 82

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           LLR     +     IETV +P ++  T C+S+QVGC++ C+FC TGT  L RNL   EI 
Sbjct: 83  LLRLADGAL-----IETVLLPSRTHYTQCLSTQVGCAMGCAFCSTGTMGLARNLAHSEIC 137

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            QVLL R  L      +  E        R + N+V MGMGEPL N+D + KSL    D  
Sbjct: 138 GQVLLGRKWLEQKNSQDKGE--------RSLRNLVFMGMGEPLMNYDTLVKSLHTLRDDK 189

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP-INRKYPLEMLI 267
              FS RR+T+ST+G    +  +       LA+SLHA + +LR  ++P   R +PL  L+
Sbjct: 190 AFGFSSRRMTVSTAGVPGRMTELVTSGLARLAVSLHAPTQELRERIMPRAARMHPLPALM 249

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
           +  +  P L    R TFEY+++ G+ND+ + A  L+++L  + AKINLI  NP     + 
Sbjct: 250 EELKKLP-LRPQERTTFEYILIGGLNDTQQHARELVRLLSHVRAKINLIACNPAKDSPFA 308

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               + I  F + ++  G  + +R  +G DI AACGQL
Sbjct: 309 APTMEAIEAFQQVLRDKGLVAMLRKSKGQDIEAACGQL 346


>gi|157736328|ref|YP_001489011.1| hypothetical protein Abu_0057 [Arcobacter butzleri RM4018]
 gi|205829660|sp|A8EQW8|RLMN_ARCB4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157698182|gb|ABV66342.1| conserved hypothetical protein, radical SAM enzyme, Cfr family
           [Arcobacter butzleri RM4018]
          Length = 360

 Score =  228 bits (582), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 128/343 (37%), Positives = 194/343 (56%), Gaps = 24/343 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q++ W+Y +    +  M ++ +E+   L +++ I   +IV ++ S DG+ K+L + 
Sbjct: 25  FRAKQVYNWLYKKYASSYDEMKNLPKELVEDLKENYPIDIMQIVKKEQSRDGSIKYLFKL 84

Query: 93  PARCIGGPVEI--------ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
                   V +        E   I    + T+C+SSQVGC + CSFC T     VRNLT 
Sbjct: 85  RDNHTVEAVLLLMKDKKIDEDGQIVRSEKYTVCISSQVGCKVGCSFCLTAKGGFVRNLTV 144

Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
            E + Q++       +     DI          K  NIV MGMGEPL NFDN  K++ I 
Sbjct: 145 GEYIAQIV-------NIKRDNDI-------AENKALNIVYMGMGEPLDNFDNFTKAVEIF 190

Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPL 263
           S+  GL+ S+RR T+STSG    I ++GE ++ + LAISLHAV ++LR+ L+P+N+ Y +
Sbjct: 191 SELDGLAISRRRQTVSTSGIATKIKKLGEKDLQIQLAISLHAVDDELRSELIPMNKAYNI 250

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
             +I A + +P +   +++ FEY+++K  NDS   A  L+ +L GI AK+NLI FNP+PG
Sbjct: 251 ASIIQAVKAFP-VDTRKKVMFEYLVIKDKNDSIEAAKKLVSLLNGIQAKVNLIYFNPYPG 309

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             Y    +KD++ F + + + G    IR  +GLDI AACGQLK
Sbjct: 310 TSYQRPQEKDMLKFKDFLNQKGVICTIRESKGLDISAACGQLK 352


>gi|160939809|ref|ZP_02087156.1| hypothetical protein CLOBOL_04700 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437243|gb|EDP15008.1| hypothetical protein CLOBOL_04700 [Clostridium bolteae ATCC
           BAA-613]
          Length = 362

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 210/374 (56%), Gaps = 29/374 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +  M  EE+   +  +G        R  Q++ W++V+    F  MS +S  +R  L 
Sbjct: 10  KKDIKSMTLEEVTAQMAALG----EKSFRAKQLYDWMHVKLAEGFDDMSSLSIPLRQKLK 65

Query: 66  QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +++S+   ++VDE++S  DGTRK+L         G V IE+V++      ++C+SSQVGC
Sbjct: 66  ENYSLTCLKMVDERVSQVDGTRKYLFGLE----DGHV-IESVWMQYHHGNSVCISSQVGC 120

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    L RNL   E+L Q+   +S+ G+                 ++SN+V+
Sbjct: 121 RMGCRFCASTLDGLERNLRPSEMLEQIYRIQSITGE-----------------RVSNVVV 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG GEP+ N+DNV + L + S   GL+ S+R +T+ST G VP I +  EE + V LA+SL
Sbjct: 164 MGSGEPMDNYDNVIRFLRLVSHEKGLNISQRSLTISTCGIVPGIRKFAEEGLAVTLALSL 223

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++++R  L+P+   Y L+ +++AC HY      RR+TFEY +++G+ND+  +A  L 
Sbjct: 224 HAPNDEVRKTLMPVANSYKLQDVLEAC-HYYYEKTGRRLTFEYSLVRGVNDNLDEARALA 282

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K++K     +NLIP NP    +Y+ S QK I  F   ++++G +  IR   G DI  ACG
Sbjct: 283 KLIKDQHGHVNLIPVNPIKERDYVQSGQKAIQDFKNLLEKNGINVTIRREMGRDIGGACG 342

Query: 364 QLKSLSKRIPKVPR 377
           QL+   K    VP+
Sbjct: 343 QLRRSYKEASAVPQ 356


>gi|312866070|ref|ZP_07726291.1| 23S rRNA m2A2503 methyltransferase [Streptococcus downei F0415]
 gi|311098474|gb|EFQ56697.1| 23S rRNA m2A2503 methyltransferase [Streptococcus downei F0415]
          Length = 375

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 209/368 (56%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R++L +  L+ G      + R SQIW W+Y + ++ F  M++IS++   LL 
Sbjct: 14  KPSIYSLTRDQLIDWSLEHG----QKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLK 69

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F    +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 70  ENFDFNPLKQRIVQE--SADGTIKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 122

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI  Q++L +  L D               G ++S++V
Sbjct: 123 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYLDD------------QGNGERVSHVV 170

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV + L   +D  GL+   R IT+STSG    I     E I V LA+S
Sbjct: 171 VMGIGEPFDNYDNVIRFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGIQVNLAVS 230

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +PLE L DA  +Y   +N RR+TFEY+ML  +ND P +A  L
Sbjct: 231 LHAPNNELRSSIMRINRSFPLEKLFDAIEYYIQTTN-RRVTFEYIMLNEVNDYPENAQEL 289

Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+N      +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 290 ADLTKSIRKLSYVNLIPYNAVSEHDQYSRSTKERVDAFYDVLKKNGVNCVVRQEHGTDID 349

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 350 AACGQLRS 357


>gi|224541738|ref|ZP_03682277.1| hypothetical protein CATMIT_00910 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525342|gb|EEF94447.1| hypothetical protein CATMIT_00910 [Catenibacterium mitsuokai DSM
           15897]
          Length = 343

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 207/362 (57%), Gaps = 28/362 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +S+  +  E+L+E L  +G        R  QI++WIYV+ + DF  M+++S+E++  L+ 
Sbjct: 3   KSIYDLTLEQLKEELKAMGQKP----FRAKQIYEWIYVKNVYDFHQMTNLSKELQETLSN 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           HFS     I +++++ DGT K+LL       GG   IETV + +    +LCV+SQ+GC++
Sbjct: 59  HFSDALLTIKEKQVARDGTTKYLLELED---GGL--IETVLMIQTYGRSLCVTSQLGCNM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +G  K  RNLT+ EI+ QVL                  V+  +  +++++V+MG
Sbjct: 114 GCSFCASGLLKKQRNLTSGEIVKQVL-----------------TVMNDLKERVTHVVVMG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+D V   +   ++  GL+   R +T+ST G +P I R   E I V LAISLHA
Sbjct: 157 TGEPFDNYDEVMNFIYTVNEPHGLAIGARHLTISTCGLIPGIERFSHEPIQVNLAISLHA 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN L+PIN++Y ++ L DA + Y   +N RR+T EY++LK +ND  + A  L   
Sbjct: 217 PNDEIRNELMPINKRYNMDDLRDAIKTYIERTN-RRVTLEYILLKDVNDDIKYARQLAHY 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+   +NLIP+NP     Y  S    I  F + + R   +  +R   G DI  ACGQL
Sbjct: 276 LRGLNVYVNLIPYNPVDEHGYKQSLGHTITAFKDELIRLHINCTLRKEHGRDIDGACGQL 335

Query: 366 KS 367
           ++
Sbjct: 336 RA 337


>gi|255007877|ref|ZP_05280003.1| hypothetical protein Bfra3_01983 [Bacteroides fragilis 3_1_12]
 gi|313145585|ref|ZP_07807778.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134352|gb|EFR51712.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 344

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 196/362 (54%), Gaps = 29/362 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+GM   EL+     +G+P         QI  W+Y + +     M+++S + R LL 
Sbjct: 3   KYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHRELLK 58

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             + +     VD   S DGT K+L R     +G    +E VYIP++ R TLCVSSQVGC 
Sbjct: 59  GEYDLGVVAPVDAMHSIDGTVKYLYR-----VGENHFVEAVYIPDEDRATLCVSSQVGCK 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LTA +IL Q+                    +P    K++N+VMM
Sbjct: 114 MNCKFCMTGKQGFTASLTANQILNQI------------------AALPERD-KLTNVVMM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V K+L I + S G  +S +RITLS+ G    + R  EE    LAISLH+
Sbjct: 155 GMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISLHS 214

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R+ L+P  R + ++ ++D  ++Y   S  RR++FEY++ KG+NDS   A  L+K+
Sbjct: 215 PFPSQRSELMPAERAFSIKEMVDLLKNYD-FSKQRRLSFEYIVFKGVNDSLIYAKELVKL 273

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  ++NLI F+  PG +   +D + ++ F + +   G  + IR  RG DI AACG L
Sbjct: 274 LRGLDCRMNLIRFHAIPGVDLEGADMETMMAFRDYLTSHGLFTTIRASRGEDIFAACGML 333

Query: 366 KS 367
            +
Sbjct: 334 ST 335


>gi|86131691|ref|ZP_01050288.1| radical SAM superfamily protein [Dokdonia donghaensis MED134]
 gi|85817513|gb|EAQ38687.1| radical SAM superfamily protein [Dokdonia donghaensis MED134]
          Length = 346

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 205/355 (57%), Gaps = 22/355 (6%)

Query: 13  MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72
           +R+  +E L    + Q     R +Q+++W++ +G  DF  M++IS+E R LL++HF I +
Sbjct: 8   IRKLTKEDLRAFFVDQGDKAFRGNQVYEWLWQKGAHDFVDMTNISKETRILLDEHFVINH 67

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
             +   + S DGT K  ++     +   + +E+V IP KSR T CVSSQVGCSL C FC 
Sbjct: 68  IRVDQMQRSSDGTIKNAVK-----LHDGLTVESVLIPTKSRTTACVSSQVGCSLNCKFCA 122

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           T   K +RNL  +EI+ QV++             I+        R +SNIV MGMGEPL 
Sbjct: 123 TARLKRMRNLNPDEIVDQVVV-------------IDRQSKLYHDRPLSNIVFMGMGEPLM 169

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHAVSNDL 250
           N++NV K++   +D  GL  S +RIT+STSG VP I +    EE+   LA+SLH+  +D+
Sbjct: 170 NYNNVIKAIDKITDPEGLGMSPKRITVSTSG-VPKIIKKMADEEVKFNLAVSLHSALDDV 228

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R  ++P N + PL  L +A  ++      +RIT+EYV+  GIND   D   L+   K +P
Sbjct: 229 RTEIMPFNEQMPLADLKEALIYWYE-KTGKRITYEYVVWDGINDRQIDIDALLDFCKAVP 287

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K+N+I +NP    ++  ++ + I  + + ++ +G +  +R  RG DI AACGQL
Sbjct: 288 SKVNIIEYNPIDDGQFQQANPQAIDRYVDVLEANGVTVTVRRSRGKDIDAACGQL 342


>gi|290580974|ref|YP_003485366.1| hypothetical protein SmuNN2025_1448 [Streptococcus mutans NN2025]
 gi|254997873|dbj|BAH88474.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 361

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 211/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R +L    +   I     + R +QIW W+Y + ++ F+ M+++S++   LLN
Sbjct: 2   KPSIYSLTRNDL----IAWTIEHGEKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  ENFLVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI  Q++L +          D  G      G +IS++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERISHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K L   +D  GL+   R IT+STSG    I     E + V LAIS
Sbjct: 159 VMGIGEPFDNYDNVLKFLRTINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAIS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +PLE L  A  +Y   +N RR+TFEY+ML G+ND+P +A  L
Sbjct: 219 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDNPENAQEL 277

Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|313203965|ref|YP_004042622.1| 23S rRNA m(2)a-2503 methyltransferase [Paludibacter propionicigenes
           WB4]
 gi|312443281|gb|ADQ79637.1| 23S rRNA m(2)A-2503 methyltransferase [Paludibacter propionicigenes
           WB4]
          Length = 345

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 202/367 (55%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+G   +EL++ + ++G+P         QI +W+Y + +     M++IS + R L
Sbjct: 1   MDKIALVGKNIDELKDIVSELGMPA----FTAKQISEWLYKKRVFSLDEMTNISAKNRAL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L   + +     V    S DGT+K+L R      GG   IE+VYIP++ R TLCVSSQVG
Sbjct: 57  LAAKYDVGRSLPVQAVESTDGTKKYLFRTE----GGHF-IESVYIPDEDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q     LT  EIL Q+                  M IP     ++N+V
Sbjct: 112 CKMGCMFCMTGKQSFTAQLTTTEILNQI------------------MSIPE-AETLTNLV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEP  N   + +SL I +   G  +S RRIT+S+ G +P +    E     LAISL
Sbjct: 153 FMGMGEPFDNTLAMLRSLEILTADYGYGWSPRRITVSSIGLIPGMKVFLERSNCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  ++ R  L+PI + +P+  ++D  R +   S+ RR++FEY++  G+NDS R A+ L+
Sbjct: 213 HSPFSEERLKLMPIEKSFPIAKVLDEIRKH-DFSHQRRVSFEYILFDGVNDSMRHAVELV 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+GI  ++NLI F+  PG +   S  + +  F + +  +G +S IR  RG DI AACG
Sbjct: 272 KLLRGIDCRVNLIRFHAIPGIDLKSSTPEKMTFFRDYLTSNGVTSTIRRSRGEDIFAACG 331

Query: 364 QLKSLSK 370
            L +L K
Sbjct: 332 MLSTLEK 338


>gi|224476327|ref|YP_002633933.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|254807211|sp|B9DPM7|RLMN_STACT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|222420934|emb|CAL27748.1| putative Radical SAM family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 364

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 213/371 (57%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
             K+S+  +  EE+++ L++ G      + R  QI++W+Y + +     M+++S+++R +
Sbjct: 16  FDKQSIYSLRYEEMQDWLVEHG----QQKFRAKQIFQWLYEKRVDSIDEMTNLSKDLREV 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F++   E V ++ S DGT K+L       +     IETV +  +   ++CV++QVG
Sbjct: 72  LKDNFTMTTLETVVKQESRDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +               V+ +   ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------VLDATDERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +   GL+   R IT+STSG +P I    EE I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLKIVNYDNGLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++++R+ L+PINR Y ++ L++A ++Y   +N RRITFEY +  G+ND    A  L
Sbjct: 233 LHAANDEIRSKLMPINRAYSIDKLMEAIQYYQEKTN-RRITFEYGLFGGVNDQLTHAREL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +++ +   +NLIP N  P   Y+ + ++DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIQNLNCHVNLIPVNHVPERNYVKTPKEDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|261405801|ref|YP_003242042.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp.
           Y412MC10]
 gi|329926635|ref|ZP_08281048.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
 gi|261282264|gb|ACX64235.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
 gi|328939176|gb|EGG35539.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
          Length = 346

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/354 (36%), Positives = 199/354 (56%), Gaps = 25/354 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL+    + G P      R +QI+ W+YV+ + DF  M+++S+E+R  L Q FS +   
Sbjct: 11  EELQAWAQENGEPA----FRGTQIYDWLYVKRVNDFAEMTNLSKELRAKLEQEFSFVTLT 66

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
            + +  S DGT K+L       +     IETV +      ++CV++QVGC + C+FC + 
Sbjct: 67  EITKLESKDGTVKFLF-----GLHDDHAIETVIMRHNYGNSICVTTQVGCRIGCTFCAST 121

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNLT+ EI+ QV+ A+ +L                 G ++S+IV+MG GEP  N+
Sbjct: 122 LGGLKRNLTSGEIVAQVVQAQKIL--------------DKTGERVSSIVIMGSGEPFENY 167

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
           +   K L       GL+  +R IT+STSG VPNI +  EE   + LAIS+HA ++ LR+ 
Sbjct: 168 EATMKFLRTMIHEKGLNIGQRHITVSTSGIVPNIYKFTEEDTQINLAISIHAPNDKLRSK 227

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           L+P+NR++P + +I++ R+Y      RRITFEY ++ G+ND    A  L  ++K +   +
Sbjct: 228 LMPVNRRFPFDDVIESLRYYQA-KTGRRITFEYALIGGVNDQVEHAEELADVIKDMNCFV 286

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           NLIP N  P  +Y+ + + DI  F   +   G +  IR  +G DI AACGQL++
Sbjct: 287 NLIPVNHVPERKYVRTSRNDIFKFQRALADKGVNVTIRREQGHDIAAACGQLRA 340


>gi|262038981|ref|ZP_06012317.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264]
 gi|261747005|gb|EEY34508.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264]
          Length = 357

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/364 (36%), Positives = 201/364 (55%), Gaps = 30/364 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            ++G   E+L+      G+     +   +Q++ W++ + + DF   ++IS+  R +L + 
Sbjct: 11  DILGFNLEKLQNIFADTGLK----KFNANQVYDWLHNKLVFDFDKFTNISKHDREILKKK 66

Query: 68  FSIIYPEIV--DEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           F++  P++V    +IS D  T K+L     R +     IE+V I  K+R TLCVSSQ+GC
Sbjct: 67  FAL--PKLVHRSHQISEDRDTEKFLFELKDRRL-----IESVLISHKNRHTLCVSSQIGC 119

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC T T K  RNL A EIL+Q    ++ L +                 K+ N+V 
Sbjct: 120 LIGCDFCATATMKYERNLDASEILMQFYHIQNYLKE--------------KNEKLGNVVF 165

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MGMGEP  N+DNV +S++I +   G +FSKR  T+STSG VP I +  E E  + LAISL
Sbjct: 166 MGMGEPFLNYDNVIESINILNSDKGQNFSKRNFTISTSGIVPVINKFTEDENQINLAISL 225

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+V +D+R+ L+PIN+ Y ++ L +A  +Y   +   RITFEY+++  +N   +DA  L+
Sbjct: 226 HSVKDDIRSELMPINKTYKVKELKEALINYQKKT-KNRITFEYILIDDLNCETKDAFELM 284

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
             L      +NLIP+NP  G  Y    +K    F   +K    +  +R  +G DI AACG
Sbjct: 285 NFLHSFSCLVNLIPYNPVAGKPYSTPSKKKQREFYTLLKDKNVNVTLRETKGQDIAAACG 344

Query: 364 QLKS 367
           QLK+
Sbjct: 345 QLKA 348


>gi|323440993|gb|EGA98700.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus O11]
          Length = 364

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 208/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
             K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R L
Sbjct: 16  FDKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQL 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F++     V ++ S DGT K+L       +     IETV +      ++CV++QVG
Sbjct: 72  LKDNFTVTSLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L               +   ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    +E I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +++R+ L+PINR Y +E LI+A ++Y   +N RR+TFEY +  G+ND    A  L
Sbjct: 233 LHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHAREL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|255525649|ref|ZP_05392582.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7]
 gi|296185409|ref|ZP_06853819.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7]
 gi|255510635|gb|EET86942.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7]
 gi|296050243|gb|EFG89667.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7]
          Length = 349

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 205/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++ +  EEL++ +   G  +     R  Q++ WIY     DF+ M ++ +  +  L +
Sbjct: 2   DNILDLSLEELKQWMKDNGESE----FRAKQVFHWIYKNNQWDFEKMDNLPKGTKEKLIK 57

Query: 67  HFSIIYPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F I  P+I++  K   D T K+L  +    I     IETV +  K   ++CVS+QVGC 
Sbjct: 58  CFEIDIPQIIEVYKSENDDTHKFLYEYKDGNI-----IETVVMKYKHGNSICVSTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +  + +VRNL++ EI+ Q+L A+                   +G +ISNIV+M
Sbjct: 113 MGCKFCASTVEGMVRNLSSGEIIAQILKAQ-----------------EKIGERISNIVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           G GEPL N++NV K LS+ +    L+  +R ITLST G VP I  + + +  + LAISLH
Sbjct: 156 GSGEPLDNYENVIKFLSLVNAEYCLNIGQRHITLSTCGIVPKIKELADKDYQITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++LR  ++PI  KY +  +I+AC++Y   +N RRITFEY ++K +NDS + A  L+K
Sbjct: 216 AANDELRKTMMPIANKYSINEIIEACKYYISKTN-RRITFEYALVKDVNDSAQSAEELVK 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGI   +NLIP N      +  S   +I  FS  + + G  + IR   G DI AACGQ
Sbjct: 275 LLKGILCHVNLIPVNKVRENNFEKSPTNNIKNFSNILIKKGIETTIRREMGSDINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|313905219|ref|ZP_07838587.1| radical SAM enzyme, Cfr family [Eubacterium cellulosolvens 6]
 gi|313469972|gb|EFR65306.1| radical SAM enzyme, Cfr family [Eubacterium cellulosolvens 6]
          Length = 351

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 205/357 (57%), Gaps = 29/357 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M+  EL+EAL ++G        R  Q+++W++ + +  ++ M+++S+ +R  L   + + 
Sbjct: 10  MLPGELKEALAQMGEKP----FRAGQVFEWLHDKRVEKYEEMTNLSKVLREKLADSYPLT 65

Query: 72  YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
             ++V E+IS  DGTRK+L   P   +     IE+V++      ++C+SSQVGC + C F
Sbjct: 66  TLQVVREEISKVDGTRKYLFALPDHNV-----IESVWMKYHHGNSVCISSQVGCRMGCRF 120

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +    LVR+LTA E+L QV   + + G+                 ++SNIV+MG GEP
Sbjct: 121 CASTLGGLVRSLTASEMLEQVYQIQRVTGE-----------------RVSNIVIMGSGEP 163

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSND 249
           L N++NV + + + S   GL+ S+R IT+ST G VPNI R+  EE+ V LAISLHA +++
Sbjct: 164 LENYENVVRFVQLVSHEKGLNLSQRNITISTCGIVPNIRRLAEEELSVTLAISLHAPTDE 223

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R  L+PI  KY +  ++DACR+Y      RR+TFEY +  G NDS  DA  L ++L  +
Sbjct: 224 KRKKLMPIANKYSIAEIMDACRYYFD-KTGRRLTFEYALTGGQNDSDEDAAELARLLAHL 282

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
              +NLIP NP     ++  ++  ++ F   ++  G +  IR   G DI  ACGQL+
Sbjct: 283 NCHVNLIPVNPVRERSFIRPNRTAVLAFQNKLENFGINVTIRREMGSDINGACGQLR 339


>gi|288904758|ref|YP_003429979.1| hypothetical protein GALLO_0545 [Streptococcus gallolyticus UCN34]
 gi|306830757|ref|ZP_07463921.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977679|ref|YP_004287395.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288731483|emb|CBI13037.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
 gi|304427104|gb|EFM30212.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177607|emb|CBZ47651.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 368

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 216/368 (58%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL E  ++ G      + R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 9   KPSIYGLTRDELIEWAIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAVLN 64

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   +V E  + DGT K+L   P   +     IETV + +    ++CV+SQVG
Sbjct: 65  ENFCVNPLKQRVVQE--ASDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTSQVG 117

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+LT+ EI  Q+++ +    D  G ++           ++S++V
Sbjct: 118 CNMGCSFCASGLIKKQRDLTSGEITSQIMMVQKYF-DERGQDE-----------RVSHVV 165

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV + L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 166 VMGIGEPFDNYNNVLRFLRTINDDNGLAIGARHITVSTSGLAHKIRDFAHESLQVNLAVS 225

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ +NR +PLE L  A  +Y   +N RR+TFEY+ML  +ND P +A  L
Sbjct: 226 LHAPNNELRSQIMRVNRSFPLEKLFAAIEYYVETTN-RRVTFEYIMLNEVNDFPENAQEL 284

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + INLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 285 ADLTKKIRKLSYINLIPYNPVSEHDQYSRSSKERVAAFYDVLKKNGVNCVVRQEHGTDID 344

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 345 AACGQLRS 352


>gi|297544781|ref|YP_003677083.1| Cfr family radical SAM protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842556|gb|ADH61072.1| radical SAM enzyme, Cfr family [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 342

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 201/361 (55%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  M  EE+EE  + IG      R R  QI+KWIY + I DF  M+DIS+ +R  L + 
Sbjct: 3   NLKNMTLEEMEEFFVNIG----ESRYRAKQIYKWIYGKKITDFDKMTDISKNLRSKLKEI 58

Query: 68  FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   ++   ++S  D T K+L     + I     IE V I  +   T CVS+QVGC++
Sbjct: 59  AYISQLKVEARRVSEIDNTVKYLFLLEDKNI-----IEGVAIKYRFGNTACVSTQVGCNM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +     VR+L A E++ QV                  M I S   KISNIV+MG
Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQV------------------MSIDSDYGKISNIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N++ V K + I ++  GL    R IT+ST G +P I +  +E + V L+ISLHA
Sbjct: 156 SGEPFDNYEEVMKFIKIVNNPYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  L+PIN+ YPLE L+ AC++Y   +  RRITFEY +++G+ND    A  L+ +
Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYIEKTR-RRITFEYSLIEGVNDKKEHAYQLVDL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+   +NLIP N      +  +  + ++ F + I+ +G S  +R   G DI AACGQL
Sbjct: 275 LQGMLCHVNLIPINYVKEIGFKKAANEKVMMFKKIIENAGISCTVRRELGSDIEAACGQL 334

Query: 366 K 366
           +
Sbjct: 335 R 335


>gi|289548506|ref|YP_003473494.1| radical SAM enzyme, Cfr family [Thermocrinis albus DSM 14484]
 gi|289182123|gb|ADC89367.1| radical SAM enzyme, Cfr family [Thermocrinis albus DSM 14484]
          Length = 347

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 209/365 (57%), Gaps = 35/365 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           ++G   EEL E ++ +G+     R R  QI  W+Y +G+ DF  M++IS+  R +L + F
Sbjct: 4   ILGYTLEELREEVVSLGLE----RYRADQILNWVYKKGVTDFSLMTNISKRDRQVLAERF 59

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           S    +++D K+    + K+L +           +ETV I E+   TLCVSSQVGC++ C
Sbjct: 60  SFHTLQMID-KVEAPDSVKYLFK-----TEDGHTVETVLIKERDHLTLCVSSQVGCAVGC 113

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
           SFC T    L+RNL  EEI+ Q +  +    D P              ++I N+V MGMG
Sbjct: 114 SFCATARDGLLRNLRTEEIIDQFIQVQK---DSP--------------QRIRNVVFMGMG 156

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM----LAISLH 244
           EPL N++NV+K++ +     GL  SKRR+++STSG +  + ++ ++  VM    LA+S++
Sbjct: 157 EPLANYENVRKAVKVMISPWGLDLSKRRVSVSTSGIISQLKKMAQD-PVMRELNLAVSIN 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A S +LR  ++PI++  PL  L++    YP   + RRI  EYV+++ +ND P  AL L +
Sbjct: 216 APSQELRERIMPISKTNPLHELMEVLYQYPYPPD-RRIMLEYVLIEKVNDEPEHALQLAQ 274

Query: 305 ILKGIPA--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +LKG P   K+NLIP+NP P   Y     + +  F + +  +G S+ +R  +G+ +  AC
Sbjct: 275 LLKGNPKKFKVNLIPYNPDPELPYRRPPLERVYRFQKILWDNGISTFVRFSKGVQVFGAC 334

Query: 363 GQLKS 367
           GQL+S
Sbjct: 335 GQLRS 339


>gi|220903723|ref|YP_002479035.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868022|gb|ACL48357.1| radical SAM enzyme, Cfr family [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 386

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/345 (38%), Positives = 189/345 (54%), Gaps = 22/345 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           + R  Q+W+WI+ R  RDF  M++IS+  R LL     I++PE+   + S DGT K+LLR
Sbjct: 46  KFRAMQLWQWIWQRMARDFDTMTNISRPCRELLAAKACIVWPEVSAVEESRDGTTKFLLR 105

Query: 92  FPARCIGGPVEIETVYIPEKSR-----GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
                     +IETV IP  SR      T C+S QVGC++ C+FC TG     RN+T  E
Sbjct: 106 LE-----DGAQIETVLIPSDSREGVRRWTQCLSCQVGCTMGCTFCSTGQMGFERNMTMGE 160

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
           IL Q+L+AR  LGD      I           + N+V MGMGEPL N   V +SL   ++
Sbjct: 161 ILGQILVAREHLGDTRLHWPI-----------LRNLVFMGMGEPLLNLKEVMRSLESLNN 209

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
             GL FS RRIT+ST G    +  +GE     LA+SLHA +  +R  ++P   ++ L  L
Sbjct: 210 DKGLGFSPRRITVSTCGIEKGLKELGESGLAFLAVSLHAPNQAVRERIMPKAARWRLNDL 269

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           + A + YP L     ITFEY+ML G+NDS   A  L  ++  +  K+N+I +N   G  Y
Sbjct: 270 MAALKSYP-LKTREHITFEYLMLGGVNDSLEHARELAPLVSAVKGKLNIIVYNAAEGSPY 328

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
               ++ I+ F + +     ++ IR  +G DI AACGQLK+  ++
Sbjct: 329 QAPSEERILAFEKYLWSKDITAIIRKSKGQDIKAACGQLKAARQK 373


>gi|222153431|ref|YP_002562608.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           uberis 0140J]
 gi|254807218|sp|B9DUW7|RLMN_STRU0 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|222114244|emb|CAR42840.1| radical SAM superfamily protein [Streptococcus uberis 0140J]
          Length = 361

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 210/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    L+ G      + R +QIW W+Y + ++ F+ M++IS++   LLN
Sbjct: 2   KPSIYSLTRDELIAWALENG----QKKFRATQIWDWLYKKRVQSFEEMTNISKDFIALLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           +HF +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  EHFCVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI  Q++L +    D  G ++           ++S++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-DERGQDE-----------RVSHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYDNVMKFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +PLE L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAQEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDVLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|297208138|ref|ZP_06924569.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|296887381|gb|EFH26283.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           ATCC 51811]
          Length = 364

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 209/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
             K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R L
Sbjct: 16  FDKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQL 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F++     V ++ S DGT K+L       +     IETV +      ++CV++QVG
Sbjct: 72  LKDNFTVTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L               +   ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    +E I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +++R+ L+PINR Y +E LI+A ++Y   +N RR+TFEY +  G+ND    A  L
Sbjct: 233 LHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHAREL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +GLDI AAC
Sbjct: 292 AHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGLDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|291514720|emb|CBK63930.1| 23S rRNA m(2)A-2503 methyltransferase [Alistipes shahii WAL 8301]
          Length = 342

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 198/365 (54%), Gaps = 33/365 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            +ESL G   ++L     ++G+P    R    QI +W+YVR   D   M+DI+   R  L
Sbjct: 3   HQESLYGKTPDQLAALCGELGMP----RFAARQIARWLYVRHTEDPLRMTDIAAAHRQRL 58

Query: 65  NQHFS--IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            + FS  +  PE V E  S DGT+K+L R     + G   +E+ YIP+  R TLCVSSQ 
Sbjct: 59  AEWFSPALSAPERVTE--SADGTKKYLFR----TLEGHY-VESAYIPDGERATLCVSSQA 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG Q L ++LTA EIL Q +                   +P    K++N+
Sbjct: 112 GCRMGCRFCATGRQGLQQSLTAAEILNQAV------------------SLPERD-KLTNL 152

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N D V ++L I +   G  +S  RITLST+G VP + R  +   V LA+S
Sbjct: 153 VFMGMGEPLDNTDEVLRALEIITAEWGFGWSPTRITLSTAGVVPELRRFLDATKVHLAVS 212

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH   ++ R  ++P+ R +P+  +    R Y   ++ RR++FEY+++ G+NDSPR    L
Sbjct: 213 LHNPFHEERMEIMPVERAWPIAEVAAILREY-DFTHQRRVSFEYIVMSGLNDSPRHIREL 271

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++L GI  +INLI F+  P   Y     + +V F + +   G  + IR  RG DI AAC
Sbjct: 272 TRLLNGIKCRINLIRFHRIPDSPYFSPGDEAMVRFRDALTARGIQTTIRASRGEDIQAAC 331

Query: 363 GQLKS 367
           G L +
Sbjct: 332 GLLST 336


>gi|239626555|ref|ZP_04669586.1| radical SAM enzyme [Clostridiales bacterium 1_7_47_FAA]
 gi|239516701|gb|EEQ56567.1| radical SAM enzyme [Clostridiales bacterium 1_7_47FAA]
          Length = 354

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/363 (35%), Positives = 206/363 (56%), Gaps = 29/363 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           ++ +  M  EE+ E +  +G        R  QI+ WI+V+    F GMS +S+E+R  L 
Sbjct: 10  RKDIKSMTLEEVTEEMAALGEKP----FRAKQIYDWIHVKLAGSFDGMSSLSKELRQKLK 65

Query: 66  QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            ++S+    I +E+IS  DGTRK+L      C+     IE+V++      ++C+SSQVGC
Sbjct: 66  DNYSLTCLSITEERISQVDGTRKYLF-----CLEDGNIIESVWMQYHHGNSVCISSQVGC 120

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    L RNL   E+L Q+                   +    G+++SN+V+
Sbjct: 121 RMGCRFCASTLDGLERNLRPSEMLDQIY-----------------RIQAHTGQRVSNVVV 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG GEP  N+DNV + L + S   GL+ S+R +T+ST G VP I +  +E + V LA+SL
Sbjct: 164 MGSGEPFDNYDNVIRFLRLISHEKGLNISQRNLTVSTCGIVPGILQFAQEGLAVTLALSL 223

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++++R  L+PI  +Y L+ +++AC HY      RR+TFEY +++G+ND+  +A  L 
Sbjct: 224 HAPNDEVRKTLMPIANRYKLKDVLEAC-HYYYEKTGRRLTFEYSLVQGVNDNLDEARALS 282

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++K     +NLIP NP    +Y+ S +K I  F + ++++G +  IR   G DI  ACG
Sbjct: 283 RLIKDQHGHVNLIPVNPIKERDYVQSGRKAIADFKDLLEKNGINVTIRREMGRDIGGACG 342

Query: 364 QLK 366
           QL+
Sbjct: 343 QLR 345


>gi|153855358|ref|ZP_01996507.1| hypothetical protein DORLON_02521 [Dorea longicatena DSM 13814]
 gi|149752178|gb|EDM62109.1| hypothetical protein DORLON_02521 [Dorea longicatena DSM 13814]
          Length = 356

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 206/365 (56%), Gaps = 29/365 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+ +     +EL+E +L IG        R+ QI++W++V+   DF  M+++S+ +R  
Sbjct: 1   MSKKDICSYNYDELKEEMLVIG----EKAFRSKQIYEWLHVKLADDFDEMTNLSKALREK 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L +++ I   +++D +IS  D T K+L       +     +E+V +      ++C+SSQV
Sbjct: 57  LKKNYEIRKVKMIDHQISKEDPTEKFLFELEDGNM-----VESVLMKYNYGNSVCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    LVR+L   E+L Q+   + + G+                 ++SN+
Sbjct: 112 GCRMGCRFCASTIGGLVRSLEPSEMLRQIYHIQKITGE-----------------RVSNV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL N+DN  K + + SD  GL+ S+R IT ST G VPN+ R+ EE + + LA+
Sbjct: 155 VVMGTGEPLDNYDNFVKFIHMLSDEHGLNISQRNITASTCGIVPNMRRLAEEGLQITLAL 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH  S + R  L+P+  KY L  ++DAC +Y   +  RRITFEY ++ G+ND P D   
Sbjct: 215 SLHGSSQEKRKKLMPVANKYDLSEVLDACDYYFDKT-GRRITFEYSLVAGVNDQPDDIRE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  ILKG    +NLIP NP    ++   D+K+ + F   ++++G +  IR  RG DI  A
Sbjct: 274 LTTILKGRNCHLNLIPVNPIKERDFKKPDRKNAMEFKNKLEKNGINVTIRRERGSDIDGA 333

Query: 362 CGQLK 366
           CGQL+
Sbjct: 334 CGQLR 338


>gi|70726698|ref|YP_253612.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           haemolyticus JCSC1435]
 gi|123776132|sp|Q4L5R9|RLMN_STAHJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|68447422|dbj|BAE05006.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 364

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 210/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
            +K+S+  +  +E++E L++ G      + R  QI++W+Y + +     M+++S+++R +
Sbjct: 16  FEKQSIYSLRYDEMQEWLVEHG----QQKFRAKQIFEWLYQKRVDSIDDMTNLSKDLRQV 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F++     V ++ S DGT K+L       +     IETV +      ++CV++QVG
Sbjct: 72  LKDNFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L               +   ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATDERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +++R+ L+PINR Y ++ L++A ++Y   +N RR+TFEY +  G+ND    A +L
Sbjct: 233 LHAAKDEIRSKLMPINRAYHVDKLMEAIKYYQEKTN-RRVTFEYGLFGGVNDQLEHARDL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|73662863|ref|YP_301644.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|123775339|sp|Q49WZ9|RLMN_STAS1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|72495378|dbj|BAE18699.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 364

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 212/371 (57%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
            +K+S+  +  +E+++ L++ G      + R  QI++W+Y + + D   M+++S+E+R +
Sbjct: 16  FEKQSIYSLRYDEMQDWLVQNG----QQKFRAKQIFEWLYEKRVDDIDDMTNLSKELREV 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F++     V ++ S DGT K+L       +     IETV +  +   ++CV++QVG
Sbjct: 72  LKDNFTMTTMTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TEERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D  GL+   R IT+STSG +P I    +E I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLKIVNDDNGLNIGARHITVSTSGIIPRIYDFADEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH  ++++R+ L+PINR Y +E L++A  +Y   +N RRITFEY +  G+ND    A  L
Sbjct: 233 LHGANDEIRSRLMPINRAYNVEKLMEAIHYYQEKTN-RRITFEYGLFGGVNDQIEHAREL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +++ +   +NLIP N  P   Y+ + ++DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIQELNCHVNLIPVNHVPERNYVKTPKEDIFKFEKELKRLGINATIRREQGADIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERKVE 362


>gi|320527283|ref|ZP_08028468.1| radical SAM enzyme, Cfr family [Solobacterium moorei F0204]
 gi|320132307|gb|EFW24852.1| radical SAM enzyme, Cfr family [Solobacterium moorei F0204]
          Length = 346

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 198/339 (58%), Gaps = 21/339 (6%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+++W+Y + +  FQ M+D+   +   L Q +SI   + +  +++ DGT K+L +  
Sbjct: 25  RAKQLFQWLYRKRVDSFQEMTDMPASLLEELAQEYSIEPVKEITRQVARDGTTKYLFQ-- 82

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              +     +ETV +      +LCV+SQ+GC++ C+FC +G  K  R+LTA EI+ QV+ 
Sbjct: 83  ---LADGSSVETVLMHFHFGESLCVTSQLGCNMGCTFCASGLLKKQRDLTAGEIVGQVMF 139

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
            +  L                +G+++ N+V+MG GEP  N+DNV +   I +  +GL+  
Sbjct: 140 VQKEL--------------DKIGKRVDNVVIMGTGEPFDNYDNVMRFCEIINSDLGLAIG 185

Query: 214 KRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            R IT+ST G VP I    +      LAISLHA +++LR  L+PI++ YPL++L+DA   
Sbjct: 186 ARHITISTCGIVPRIKDFAKGHYQYNLAISLHAPNDELRRKLMPIDQAYPLDVLMDALHE 245

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y    N RRITFEY++L G+ND+   A+ L  +++G+ A +NLIP+N      Y+ +++K
Sbjct: 246 YSE-GNNRRITFEYILLHGVNDTDAHAIQLANLIRGMNAYVNLIPYNQVDENGYVSTNEK 304

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             + F + + + G  + +R+  G DI AACGQL++  ++
Sbjct: 305 VALHFYDVLMKHGVKATLRSKHGDDIDAACGQLRAKHEK 343


>gi|225156281|ref|ZP_03724759.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2]
 gi|224803013|gb|EEG21258.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2]
          Length = 367

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/345 (38%), Positives = 186/345 (53%), Gaps = 12/345 (3%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLR 91
           +  +++W ++Y+    D + MSD+   +R  L    S     +  E  S DG TRK+LL 
Sbjct: 28  VHAARLWAYLYLEDTDDIRAMSDLPARMRDRLLAETSAARLPVACETHSSDGFTRKYLL- 86

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +    EIETV +  K R T CVSSQVGC++ C FC TG     R+LTA EI+ Q 
Sbjct: 87  ----ALSDGREIETVLMRYKGRVTACVSSQVGCAMGCVFCATGQMGFTRHLTAGEIVAQA 142

Query: 152 L----LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
           L    + R    D P   +           ++ NIV+MGMGEPL N+D V +++ I  D 
Sbjct: 143 LHVDRVLRRTADDAPALAEPGNASPHHRHERLRNIVLMGMGEPLHNYDAVMRAIDILRDG 202

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEML 266
            GL+   R+ITLST G VP I R+ +E   V LA+SLH  +   R  LVP  R +PL+ L
Sbjct: 203 NGLALGARKITLSTVGVVPGIIRLADEHNPVHLAVSLHGATQAERAALVPAARAWPLDAL 262

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           ++ACR+Y      RRI FE+ +++G ND P  A  + ++L+G+ A++NLIP NP  G   
Sbjct: 263 MEACRYYV-QKQQRRIFFEWTLIEGKNDGPDQARAVGRLLRGMQAQVNLIPLNPTSGYAG 321

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
                     F   +   G  S IR  RG+DI A CGQL + S+R
Sbjct: 322 EPGRADAAKRFQAVLAEHGLPSTIRQRRGIDIGAGCGQLATESRR 366


>gi|312910636|ref|ZP_07769477.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 516]
 gi|311289012|gb|EFQ67568.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 516]
          Length = 360

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 216/368 (58%), Gaps = 26/368 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    D  G ++           ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N RR+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP     +Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKS 367
           AA GQ++S
Sbjct: 339 AAFGQIRS 346


>gi|226313314|ref|YP_002773208.1| ribosomal RNA large subunit methyltransferase N [Brevibacillus
           brevis NBRC 100599]
 gi|226096262|dbj|BAH44704.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 356

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 134/360 (37%), Positives = 206/360 (57%), Gaps = 25/360 (6%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           +  + ++E++E L+  G        R  QI+ W+YV+ +  F+ MS++S+E+R  L   F
Sbjct: 13  IYSLTQDEMKEWLVSAGDKA----FRAQQIFDWLYVKRVSSFEEMSNLSKELREKLADTF 68

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            +   + +  + S DGT K+L +     + G   IETV +      ++CV++QVGC + C
Sbjct: 69  RMEPLKEITHQESQDGTIKFLFQL----VDGHA-IETVIMRHNYGNSICVTTQVGCRIGC 123

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
           +FC +    L RNL A EI+ QVL A+  L       D EG        ++S++V+MG+G
Sbjct: 124 TFCASTLGGLKRNLDAGEIVSQVLTAQRRL-------DAEG-------ERVSHVVVMGIG 169

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVS 247
           EP  NF+++   LS+ +D+ GL+   R IT+STSG VP I    E  G V LAISLHA +
Sbjct: 170 EPFENFESLMAFLSVINDNRGLNIGARHITVSTSGIVPKIYEFAERGGQVNLAISLHAPN 229

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
            +LR+ L+PINR +PL  L++AC HY      RRI+FEY +  G ND P  A  L +++ 
Sbjct: 230 TELRSQLMPINRGFPLAKLMEACHHYIN-KTGRRISFEYGLFGGKNDQPEHAEELAELIG 288

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +   +NLIP N  P  +Y+ + + +I  F   ++  G +  IR  +G DI AACGQL++
Sbjct: 289 DMLCHVNLIPVNYVPERDYVRTPRNEIFQFKRILEEKGINVTIRREQGSDIAAACGQLRA 348


>gi|283769598|ref|ZP_06342494.1| radical SAM enzyme, Cfr family [Bulleidia extructa W1219]
 gi|283103866|gb|EFC05252.1| radical SAM enzyme, Cfr family [Bulleidia extructa W1219]
          Length = 348

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 206/366 (56%), Gaps = 25/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +++  +   +LEE +L++G      + R  Q++ W+Y + +  F+ M+D+       L  
Sbjct: 2   QTIYDLTLHQLEELVLELG----QKKYRAKQLFTWLYRKRVLSFEEMTDLPTSFIEELKS 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           HF I+  + V  ++S DGTRK+L       +     IETV +      +LCV+SQ+GC++
Sbjct: 58  HFIIMPVKEVMRQVSKDGTRKYLF-----SLEDGSSIETVLMHFNFGESLCVTSQLGCNM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +G  K  R+L+  EIL Q++  +  L       D E +       +ISNIV+MG
Sbjct: 113 GCTFCASGLLKKQRDLSQGEILGQLMYVQKEL-------DSENL-------RISNIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
            GEP  N+D+V      A+  +GL    R IT+ST G VP I    +      LAISLHA
Sbjct: 159 TGEPFDNYDHVLGFCKTANQDIGLGIGARHITISTCGIVPKIREFSKSHYQYNLAISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + +LR+ L+PIN +YPL  L+D+ + Y   SN RRITFEY++L G+NDS + A+ L  +
Sbjct: 219 PNQELRDKLMPINHRYPLSELMDSLKEYSE-SNHRRITFEYILLHGVNDSDQHAIELAHL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++G+ A +NLIP+N      Y  +D K  + F + + + G  + +R   G DI AACGQL
Sbjct: 278 IRGMNAYVNLIPYNKVDEKGYESTDDKTALHFYDVLMKHGVKATLRQKHGDDIDAACGQL 337

Query: 366 KSLSKR 371
           ++  ++
Sbjct: 338 RAKHEK 343


>gi|315224773|ref|ZP_07866595.1| cfr family radical SAM enzyme [Capnocytophaga ochracea F0287]
 gi|314945266|gb|EFS97293.1| cfr family radical SAM enzyme [Capnocytophaga ochracea F0287]
          Length = 350

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/334 (38%), Positives = 194/334 (58%), Gaps = 20/334 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +Q+++W++ +G+  F+ M+ + +  R +L++HFSI + ++   + S DGT K  +R 
Sbjct: 27  FRGNQVYEWLWQKGVHTFEEMTSLPKATREMLSEHFSINHIKVDVMQRSNDGTIKNAVRL 86

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     +E+V IP  +R T CVSSQVGCSL CSFC T   K +RNL  +EI  QV 
Sbjct: 87  HDGLL-----VESVLIPTDTRTTACVSSQVGCSLNCSFCATARLKRMRNLLPDEIFDQVK 141

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +             I+       GR +SNIV MGMGEPL N++NV K++   +   GL  
Sbjct: 142 V-------------IDEQSRAFFGRPLSNIVFMGMGEPLMNYNNVLKAIDKITSPEGLGM 188

Query: 213 SKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S +RITLSTSG    I ++ + E+   LA+SLH+  + +R  ++P N ++PLE L +A  
Sbjct: 189 SPKRITLSTSGIPKLIKKMADDEVKFKLAVSLHSAISSVRTGIMPFNEQFPLEELREALA 248

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           ++   +   RIT+EYV+ KGIND  +D   LIK  K  P+K+NLI +NP     +  +D 
Sbjct: 249 YWYQKTK-NRITYEYVVWKGINDQKKDVEALIKFCKFAPSKVNLIEYNPIDDGAFQQADP 307

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           K +  +   ++ +G +  +R  RG DI AACGQL
Sbjct: 308 KALELYQTMLEEAGITVTVRHSRGKDIDAACGQL 341


>gi|256819328|ref|YP_003140607.1| radical SAM enzyme, Cfr family [Capnocytophaga ochracea DSM 7271]
 gi|256580911|gb|ACU92046.1| radical SAM enzyme, Cfr family [Capnocytophaga ochracea DSM 7271]
          Length = 350

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/334 (38%), Positives = 194/334 (58%), Gaps = 20/334 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +Q+++W++ +G+  F+ M+ + +  R +L++HFSI + ++   + S DGT K  +R 
Sbjct: 27  FRGNQVYEWLWQKGVHTFEEMTSLPKATREMLSEHFSINHIKVDVMQRSNDGTIKNAVRL 86

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     +E+V IP  +R T CVSSQVGCSL CSFC T   K +RNL  +EI  QV 
Sbjct: 87  HDGLL-----VESVLIPTDTRTTACVSSQVGCSLNCSFCATARLKRMRNLLPDEIFDQVK 141

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +             I+       GR +SNIV MGMGEPL N++NV K++   +   GL  
Sbjct: 142 V-------------IDEQSRAFFGRPLSNIVFMGMGEPLMNYNNVLKAIDKITSPEGLGM 188

Query: 213 SKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S +RITLSTSG    I ++ + E+   LA+SLH+  + +R  ++P N ++PLE L +A  
Sbjct: 189 SPKRITLSTSGIPKLIKKMADDEVKFKLAVSLHSAISSVRTGIMPFNEQFPLEELREALA 248

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           ++   +   RIT+EYV+ KGIND  +D   LIK  K  P+K+NLI +NP     +  +D 
Sbjct: 249 YWYQKTK-NRITYEYVVWKGINDQKKDVEALIKFCKFAPSKVNLIEYNPIDDGAFQQADP 307

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           K +  +   ++ +G +  +R  RG DI AACGQL
Sbjct: 308 KALELYQTMLEEAGITVTVRHSRGKDIDAACGQL 341


>gi|225847963|ref|YP_002728126.1| ribosomal RNA large subunit methyltransferase N
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644008|gb|ACN99058.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 353

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 208/365 (56%), Gaps = 29/365 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  +  +ELE  +++ G P    + R  QI KW+Y + +  F  M+D+S+E+R  L + 
Sbjct: 3   NLKNLNFKELENFVVENGWP----KFRAKQIAKWLYNKKVESFDQMTDLSKEIRQTLKEK 58

Query: 68  FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   +++  + S  DG+ K+L +     +     IETV I EK+  TLCVS+QVGC++
Sbjct: 59  CEINSLKLLTYQQSKIDGSIKFLWQ-----LKDGNTIETVLINEKNHKTLCVSTQVGCAV 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FCYT    L+RNL   EI+ Q +  +  LGD                 +ISNIV MG
Sbjct: 114 GCKFCYTTKDGLIRNLETAEIVDQYINVQRFLGD-------------EEENRISNIVYMG 160

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG---VMLAISL 243
           MGEPL N+DNVKKS+ I +       S R+IT+S+SG +  I R+ E+     V LA+SL
Sbjct: 161 MGEPLANYDNVKKSVQIFTHPDMCKLSHRKITISSSGILHQIKRMFEDKDFPQVKLAVSL 220

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           +A     R+ L+PI++   LE L+D  R  P L    RIT EYV++K +ND+  DA  L+
Sbjct: 221 NASHQSQRSYLMPISQTNTLEDLMDLLRKLP-LKPGWRITLEYVLIKNVNDTVEDAKRLV 279

Query: 304 KILKGIPA--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
            ++K      K+NLIPFNP+PG ++   ++  ++ F + +  +  ++ IR  +G DI AA
Sbjct: 280 NLIKKDKHRFKVNLIPFNPYPGSDFERPEESRVLAFEKVLWDNNIATFIRWSKGRDIDAA 339

Query: 362 CGQLK 366
           CGQL+
Sbjct: 340 CGQLR 344


>gi|329770490|ref|ZP_08261868.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis
           M325]
 gi|328836239|gb|EGF85908.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis
           M325]
          Length = 377

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 203/369 (55%), Gaps = 25/369 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
            +K S+  +  ++LEE ++ IG      + R  QI+ W+Y + + DF  M +I + ++  
Sbjct: 18  FEKMSIYSIRLDQLEEYMISIG----EKKFRAKQIYDWLYKKRVTDFSEMKNIPKSLQEK 73

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L   F I     + ++ S DGT K+L     +       IE+V +  K   +LCV++QVG
Sbjct: 74  LKDEFEITTLNTIIKQESADGTMKFLFELQDK-----FTIESVLMRNKYGNSLCVTTQVG 128

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L                 G +IS+IV
Sbjct: 129 CRIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQEL--------------DKKGERISSIV 174

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   + I +     +   R IT+STSG VP I     E I +  A+S
Sbjct: 175 IMGIGEPFENYDEMMDFIKIVNSDESFNIGARHITVSTSGIVPRIYDFANENIQINFAVS 234

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++P+NR Y ++ L++A R+Y   +N RRITFEY ++  +ND    A  L
Sbjct: 235 LHAPTNELRSKIMPVNRAYNIDKLMEALRYYQKTTN-RRITFEYGLMGKVNDQKEHAEKL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +I+KGI   +NLIP N  P   Y+ + + DI  F + +K++  +  IR  +G DI AAC
Sbjct: 294 SEIIKGINCHVNLIPINYVPERNYVRTSKNDIFAFEKILKKNKVNVTIRRTQGDDIDAAC 353

Query: 363 GQLKSLSKR 371
           GQL++  ++
Sbjct: 354 GQLRAKERK 362


>gi|239826567|ref|YP_002949191.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp.
           WCH70]
 gi|239806860|gb|ACS23925.1| radical SAM enzyme, Cfr family [Geobacillus sp. WCH70]
          Length = 364

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 195/347 (56%), Gaps = 21/347 (6%)

Query: 26  IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGT 85
           I Q     R +QI++W+Y +   DF  M+++ + +R  L++HF I   + + ++ S DGT
Sbjct: 34  IEQGEKPFRATQIYEWLYQKRATDFSEMTNLPKTLREKLSEHFDITTLKTLVKQTSKDGT 93

Query: 86  RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145
            K+L       +     IETV +      ++CV++QVGC + C+FC +    L R+L A 
Sbjct: 94  IKFLFE-----LHDGYSIETVLMRHNYGNSICVTTQVGCRIGCTFCASTLGGLKRHLEAG 148

Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           EI+ QV+  +  L +               G ++S+IV+MG+GEP  N+D + K L I +
Sbjct: 149 EIVAQVVKVQKALDE--------------QGERVSSIVVMGIGEPFDNYDELIKFLKIVN 194

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264
            S GL+   R IT+STSG +P I +  +E + V  AISLHA + +LR  L+PIN+ YPL 
Sbjct: 195 HSKGLNIGARHITVSTSGIIPKIYQFADEGMQVNFAISLHAPTTELRTKLMPINKAYPLP 254

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
            L+DA R+Y      RR+TFEY +  G+ND    A  L +++KG+   +NLIP N  P  
Sbjct: 255 KLMDAVRYYIE-KTGRRVTFEYGLFGGVNDQIEHAEQLAELIKGLKCHVNLIPVNYVPER 313

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
            Y+ + +  I  F   +K+ G +  IR   G DI AACGQL++  ++
Sbjct: 314 NYVRTPRDQIFAFERALKKHGINVTIRREHGHDIDAACGQLRAKERK 360


>gi|91200995|emb|CAJ74052.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 368

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 200/367 (54%), Gaps = 26/367 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN L+  S+  +   E  E    +G P      R  QI  W+Y +G  DF  MSDI    
Sbjct: 1   MNKLQLTSITELDLSESVELCRSLGEPS----YRGKQILSWMYKKGATDFNQMSDIPLPF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +  ++   +I     S DGT K+L+  P   +     IE V + +  R T CVS+
Sbjct: 57  REKLEEAHNVFQTKIHTINTSQDGTEKFLIHLPDNNL-----IECVLLRDGKRRTACVST 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ CSFC +G   L RNL   EI+ QVL  ++ L   P  E             I+
Sbjct: 112 QVGCAMGCSFCASGVLGLTRNLKTGEIIEQVLHIKNHL---PANE------------HIT 156

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           NIV MG+GEPL N+D V KSL I +   GL+   R IT+ST G +  I R+ +E + V L
Sbjct: 157 NIVFMGIGEPLANYDKVVKSLRIMNADWGLAIGARNITISTVGLIEGIRRLAKEGLKVNL 216

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           AISLHA +++ RN LVP N K  ++ ++ A + Y   ++ R I+FEY M+ GINDS +DA
Sbjct: 217 AISLHASNDNTRNKLVPSNSKTGIKNILGAAQEYFNATH-RDISFEYTMIDGINDSKQDA 275

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L +ILKG+   +N++P NP     +    QK + TF   +K  G  + +R  +G+++ 
Sbjct: 276 KLLAQILKGVQCNVNILPVNPIKEGNFAPPVQKTVETFCTVLKNHGIVATVRQRKGINVN 335

Query: 360 AACGQLK 366
           AACGQL+
Sbjct: 336 AACGQLR 342


>gi|239636303|ref|ZP_04677305.1| radical SAM enzyme, Cfr family [Staphylococcus warneri L37603]
 gi|239597658|gb|EEQ80153.1| radical SAM enzyme, Cfr family [Staphylococcus warneri L37603]
          Length = 364

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 209/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
            +K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R L
Sbjct: 16  FEKQSIYSLRYDEMQNWLIEHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQL 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F++     V ++ S DGT K+L       +     IETV +  +   ++CV++QVG
Sbjct: 72  LKDNFAMTTLTTVVKQESRDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TEERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH   +++R+ L+PINR Y +E L++A  +Y   +N RRITFEY +  G+ND    A +L
Sbjct: 233 LHGAKDEVRSRLMPINRAYNVEKLMEAIEYYQEKTN-RRITFEYGLFGGVNDQLEHARDL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKGLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|282600947|ref|ZP_05980240.2| radical SAM enzyme, Cfr family [Subdoligranulum variabile DSM
           15176]
 gi|282570117|gb|EFB75652.1| radical SAM enzyme, Cfr family [Subdoligranulum variabile DSM
           15176]
          Length = 345

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 199/353 (56%), Gaps = 30/353 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           EL   ++ +G P    + R  QI+KW++ + + +F  M+D  + +  +L +  +I  P I
Sbjct: 13  ELTAYIVGLGQP----KFRAKQIFKWLHQKLVTEFTQMTDQPKTLLAVLEEQCTIAVPTI 68

Query: 76  VDEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
             ++ S DGT K+LL+     CI      ETV +  K   T+CVS+QVGC++ C FC + 
Sbjct: 69  RRKQQSKDGTVKYLLQLADGNCI------ETVLMRYKYGNTVCVSTQVGCAMGCRFCAST 122

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
               VR+LTA EI  ++  A+                    G ++S+IV+MG+GEPL NF
Sbjct: 123 QAGRVRDLTAGEIAAEIYTAQK-----------------DSGERVSHIVLMGIGEPLHNF 165

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNI 253
           DNV   L I S   G++   R I+LST G VP I  + +  + + L++SLHA  N  R+ 
Sbjct: 166 DNVMDFLEIISCPEGVNIGMRNISLSTCGLVPKIDELAKRHLQLTLSVSLHAPDNVTRSG 225

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           ++P+N  YPLE LI ACR Y      RRI+FEY M++G+NDS   A  L +++ G+ A +
Sbjct: 226 MMPVNDAYPLEELIPACRRYQK-ETGRRISFEYSMVRGVNDSSEMAQKLARLIHGMGAHV 284

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           NLIP NP  G  Y  +D+ ++  F + ++  G ++ +R   G DI AACGQL+
Sbjct: 285 NLIPINPVDGSPYSATDEANVRRFQQELEHLGVNATVRRRLGTDISAACGQLR 337


>gi|325297954|ref|YP_004257871.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
           salanitronis DSM 18170]
 gi|324317507|gb|ADY35398.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
           salanitronis DSM 18170]
          Length = 348

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 197/369 (53%), Gaps = 29/369 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G   +EL +A+ ++G+P    R    QI +W+Y + +     M+++S   R LL 
Sbjct: 2   KTALLGKTLDELNDAVKELGMPAFSAR----QIAQWLYGKKVSSIDEMTNLSLRNRELLK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +H+ +     V    S DGT K+L R P         +E+VYIP+  R TLCVSSQVGC 
Sbjct: 58  EHYEVGAALPVHAMRSADGTVKYLFRTPEGNF-----VESVYIPDGERATLCVSSQVGCK 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LT  +IL Q+                    IP     ++N+V M
Sbjct: 113 MNCKFCMTGKQGYAGSLTVTQILNQIY------------------SIPERD-SLTNVVFM 153

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP  N D V ++L I +   G ++S +RIT+ST G    + R   E    LA+SLH+
Sbjct: 154 GMGEPFDNLDAVLRALEILTSDYGYAWSPKRITVSTVGLRRGLERFLAESDCHLAVSLHS 213

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  R +P+  +++  R+Y   S  RR++FEY++  G+NDS   A  L+K+
Sbjct: 214 PFPSQRAELMPAERAFPITEIVNVLRNYD-FSKQRRLSFEYILFGGVNDSLVYAKELVKL 272

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  +INLI F+  PG +   +D + +  F + + + G  + IR  RG DI AACG L
Sbjct: 273 LRGLDCRINLIRFHAIPGVDLQGADMETMTAFRDYLTKHGIFATIRASRGEDIFAACGML 332

Query: 366 KSLSKRIPK 374
            +  ++  K
Sbjct: 333 STAEQQAEK 341


>gi|27262416|gb|AAN87489.1| florfenicol resistance protein [Heliobacillus mobilis]
          Length = 360

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 136/374 (36%), Positives = 206/374 (55%), Gaps = 34/374 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  L G++ EE+ + L + G    H   R  QI+KW+  R +R+   M+D+ Q +R  +
Sbjct: 6   EKTELRGLLPEEMAQTLQEWG----HPAYRGKQIFKWVQSRAVREAAEMTDLPQALRSKI 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-----EKSRGTLCVS 119
                +    +   ++S DGT K+L +     +     IETV +P      + R T+C+S
Sbjct: 62  EAERWLRPLALSCCRVSKDGTEKYLWQLADGEL-----IETVLMPYRRSQTRDRVTVCLS 116

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI---EGMVIPSVG 176
           +Q GC L C FC TG Q   RNLTA EI+ QVL             DI   +G   P   
Sbjct: 117 TQAGCPLGCKFCATGQQGFRRNLTAGEIVSQVL-------------DITHRKGQSDPDF- 162

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235
            K++N+V MGMGEP  N++ V++++ + +   G +  +RRIT+STSG VP I R   E  
Sbjct: 163 -KVTNLVFMGMGEPFLNYEQVRRAIELFTHPEGQNIGQRRITVSTSGIVPGIERFARENW 221

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
            + LA+SLHA  + LR+  +P+NR+YP+E +++ACR Y      RR++ EY +++G+ND 
Sbjct: 222 EINLALSLHAADDQLRSQWMPVNRQYPIEKVLNACRRY-WEQGRRRLSVEYALIEGVNDR 280

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
             DA  L K+    P  +N+IP NP         D+  +V F + +KR G  + IR  RG
Sbjct: 281 LEDARQLGKLFTRWPIHLNVIPVNPVTESGARRPDKARMVQFLDELKRQGIDAVIREERG 340

Query: 356 LDILAACGQLKSLS 369
           +DI AACGQL+  +
Sbjct: 341 VDIEAACGQLRGAA 354


>gi|237721458|ref|ZP_04551939.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449254|gb|EEO55045.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 344

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 198/364 (54%), Gaps = 29/364 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++ +P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MSKYPLLGMTLVELQSLTKRLDMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     VDE  S DGT K+L +     +G    +E+VYIP+  R TLCVSSQVG
Sbjct: 57  LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                    +P    K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI------------------HSLPERD-KLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L + + + G ++S +RITLST G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R  L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +D   +  F + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKS 367
            L +
Sbjct: 332 MLST 335


>gi|94990786|ref|YP_598886.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS10270]
 gi|123257976|sp|Q1JG02|RLMN_STRPD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|94544294|gb|ABF34342.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS10270]
          Length = 359

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 210/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL E  ++ G  Q     R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 2   KPSIYSLTRDELIEWAVERGQKQ----FRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   +V E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DSFCVNPLKQRVVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L + EI  Q++L +    D               G ++S++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L + +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ +NR +PLE L  A  +Y   +N RR+TFEY+ML  +NDS + A  L
Sbjct: 219 LHAPNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTN-RRVTFEYIMLNEVNDSIKQAQEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|237755450|ref|ZP_04584074.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692382|gb|EEP61366.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 354

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 135/358 (37%), Positives = 208/358 (58%), Gaps = 29/358 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +ELE  +++ G      + R  QI KW+Y +    +  M+D+S+++R+ L ++      E
Sbjct: 11  KELENFVVEKGWQ----KFRAKQIAKWLYKKKASSYDEMTDLSKDIRNYLKENTEFNALE 66

Query: 75  IV-DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           +V  ++   DG+ K+L +     +     IETV I EK+  TLCVS+QVGC++ C FC+T
Sbjct: 67  LVMYQQSKIDGSIKFLWK-----LKDGNTIETVLINEKNHKTLCVSTQVGCAVGCKFCFT 121

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
               L+RNL   EI+ Q +  +  LGD                 +ISNIV MGMGEPL N
Sbjct: 122 TKDGLIRNLETAEIVEQYINVQRFLGD-------------EEENRISNIVYMGMGEPLAN 168

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHAVSNDL 250
           ++NVKKS+ I +    +  S R+IT+S+SG +  I R+ E+     V LA+SL+A + D 
Sbjct: 169 YENVKKSVQIFTHPDMVGLSHRKITISSSGILHQIKRMYEDKEFPEVKLAVSLNASNQDQ 228

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R  L+PI++   L+ L+D  R  P L    RIT EYV++KG+NDS +DA  L+ +LK   
Sbjct: 229 RAFLMPISQTNTLQDLMDLLRSIP-LKPGWRITLEYVLIKGVNDSEQDAKRLVNLLKKDK 287

Query: 311 A--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
              K+NLIPFNP+P  E+   +++ ++ F + +  +  ++ IR  +G DI AACGQL+
Sbjct: 288 HRFKVNLIPFNPYPSAEFERPEEERVLKFEKILWDNNIATFIRWSKGRDIDAACGQLR 345


>gi|312143909|ref|YP_003995355.1| radical SAM enzyme, Cfr family [Halanaerobium sp. 'sapolanicus']
 gi|311904560|gb|ADQ15001.1| radical SAM enzyme, Cfr family [Halanaerobium sp. 'sapolanicus']
          Length = 347

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 139/360 (38%), Positives = 201/360 (55%), Gaps = 28/360 (7%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           + R EL + L   G P      R  Q++ W+Y  GI + + M +I  E++  LN ++ I 
Sbjct: 7   LKRNELIKELKNAGFPA----YRGEQVFNWLYKNGISETEKMKNIPGELKEYLNDNYEIT 62

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVGCSLTCS 129
             +   +  + DGT K+L       +     IE VY+P  E +R + C+S+QVGC L CS
Sbjct: 63  DLKEKAKSQAADGTIKYLWE-----LKDGENIEGVYLPFPESARHSACISTQVGCGLGCS 117

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG   L RNLT  EI+ QVL    +  D    E  E         ++SNIV MGMGE
Sbjct: 118 FCATGINGLERNLTTAEIIDQVL---KIQADISRDEFAEP--------RLSNIVFMGMGE 166

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE---EIGVMLAISLHAV 246
           PL NF+N+ +++ I +   GL+   R++T+ST G VP I ++ +   +IG  LA+SLHA 
Sbjct: 167 PLANFENLMQAVEIINSDNGLNIGMRKMTISTVGLVPEIKKLADRNDQIG--LAVSLHAP 224

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LRN ++PIN+KY L  L+ A   Y   +  RR+TFEYV++  +NDSP  A+ L+++L
Sbjct: 225 NDRLRNKIMPINKKYNLNQLLTAVIDYIEKT-GRRVTFEYVLMDSVNDSPELAVQLVELL 283

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +GI   +NLIP NP P        QK I +F   +  +G    +R   G  I AACGQLK
Sbjct: 284 RGINCHVNLIPANPVPELNIKKPVQKVIDSFYSTLDNNGIQVSLRREMGSQIDAACGQLK 343


>gi|323342528|ref|ZP_08082760.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463640|gb|EFY08834.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 347

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 120/337 (35%), Positives = 197/337 (58%), Gaps = 21/337 (6%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R  Q+++W+Y + +  F  MSD+S  +R  L Q F +   ++V ++++ D T K+LL 
Sbjct: 23  RFRAKQLFQWLYQKRVTSFDDMSDLSISLREKLKQDFELDTLKVVMKQVASDETTKFLLE 82

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
               C  G + IETV +      ++CV+SQVGC++ C FC +G  K  RNLT+ E++ Q+
Sbjct: 83  ----CSDGAL-IETVMMKHDYGYSVCVTSQVGCAMGCKFCASGLLKKKRNLTSAEVVNQI 137

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +  +  L +                +++S+IV+MG+GEP  N+DN+ + + I +   GL 
Sbjct: 138 MFVQRHLDE--------------QDKRVSHIVVMGIGEPFDNYDNIMRFIRIVNHDHGLG 183

Query: 212 FSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
              R IT+STSG  P I +   E+  V LAISLHA ++ LR+ ++P+N+ + LE L DA 
Sbjct: 184 IGARHITISTSGVAPVIKKFADEQTQVNLAISLHAPNDTLRSEIMPVNKMFNLEKLFDAL 243

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           ++Y   SN RR+TFEY+++  +ND    A  L+ +++G+ A +NLIP+N      +  + 
Sbjct: 244 KYYQSKSN-RRLTFEYILIDNVNDQIAQAKELVALIRGMNAYVNLIPYNEVDENPFRQTK 302

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +    F + +KR+G    IR  +G +I AACGQL++
Sbjct: 303 PEQAAKFYDYLKRNGIQCTIRREKGSEIDAACGQLRA 339


>gi|314933392|ref|ZP_07840757.1| radical SAM enzyme, Cfr family [Staphylococcus caprae C87]
 gi|313653542|gb|EFS17299.1| radical SAM enzyme, Cfr family [Staphylococcus caprae C87]
          Length = 364

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 208/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
             K+S+  +  +E+++ L+  G      + R  QI++W+Y + +     M+++S+E+R +
Sbjct: 16  FDKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKELRQV 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F++     V ++ S DGT K+L       +     IETV +  +   ++CV++QVG
Sbjct: 72  LKDNFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH   +++R+ L+PINR Y +E L++A ++Y   +N RR+TFEY +  G+ND    A +L
Sbjct: 233 LHGAKDEIRSRLMPINRAYNVEKLMEAIKYYQEQTN-RRVTFEYGLFGGVNDQLEHARDL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|306832938|ref|ZP_07466070.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338]
 gi|304424837|gb|EFM27971.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338]
          Length = 368

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 215/368 (58%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL E  ++ G      + R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 9   KPSIYALTRDELIEWAIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAVLN 64

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   +V E  + DGT K+L   P   +     IETV + +    ++CV+SQVG
Sbjct: 65  ENFCVNPLKQRVVQE--ASDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTSQVG 117

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+LT+ EI  Q+++ +    D  G ++           ++S++V
Sbjct: 118 CNIGCSFCASGLLKKQRDLTSGEITSQIMMVQKYF-DERGQDE-----------RVSHVV 165

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV + L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 166 VMGIGEPFDNYNNVLRFLRTINDDNGLAIGARHITVSTSGLAHKIRDFAHESLQVNLAVS 225

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ +NR +PLE L  A  +Y   +N RR+TFEY+ML  +ND P +A  L
Sbjct: 226 LHAPNNELRSQIMRVNRSFPLEKLFAAIEYYVETTN-RRVTFEYIMLNEVNDFPENAQEL 284

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + INLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 285 ADLTKKIRKLSYINLIPYNPVSEHDQYSRSSKERVAAFYDVLKKNGVNCVVRQEHGTDID 344

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 345 AACGQLRS 352


>gi|120434720|ref|YP_860407.1| radical SAM superfamily protein, UPF0063 [Gramella forsetii KT0803]
 gi|205829770|sp|A0LY94|RLMN_GRAFK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|117576870|emb|CAL65339.1| radical SAM superfamily protein, UPF0063 [Gramella forsetii KT0803]
          Length = 352

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 201/358 (56%), Gaps = 20/358 (5%)

Query: 13  MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72
           +R   +E L K  + +     R +Q+++W++ +    F  M++IS+E R +L  +F I +
Sbjct: 13  IRALTKEQLQKFFVAEGDKSFRGTQVYEWLWSKAAHSFDDMTNISKETRQMLKDNFVINH 72

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
             +   + S DGT K  ++     +   + +E+V IP KSR T CVSSQVGCSL C FC 
Sbjct: 73  IRVDRMQRSSDGTIKNAVK-----LHDALTVESVLIPTKSRTTACVSSQVGCSLDCQFCA 127

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           T   K +RNL  +EI  QV+              I+        R +SNIV MGMGEPL 
Sbjct: 128 TAKLKRMRNLNPDEIYDQVVA-------------IDNESRLYFDRPLSNIVFMGMGEPLM 174

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLR 251
           N++NV K++   +   GL  S +RIT+STSG    I ++  +E  + LA+SLH+  N++R
Sbjct: 175 NYNNVMKAVEKITSPEGLGMSPKRITISTSGVPKMIKKLADDEAKIKLAVSLHSARNEVR 234

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             ++P N  +PLE L +A  ++   + + RIT+EY++ K IND+  DA  L++  K +P 
Sbjct: 235 TQIMPFNETFPLEDLREALEYWYSKTTS-RITYEYIVWKDINDTREDAQALVRFCKYVPC 293

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           K+NLI +NP     +  +  +    + + ++R+G +  +R  RG DI AACGQL + S
Sbjct: 294 KVNLIEYNPIDDGNFQQAAIEATNMYQDMLERNGITVTVRRSRGKDIDAACGQLANKS 351


>gi|150390541|ref|YP_001320590.1| radical SAM protein [Alkaliphilus metalliredigens QYMF]
 gi|205829711|sp|A6TRW3|RLMN_ALKMQ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|149950403|gb|ABR48931.1| radical SAM enzyme, Cfr family [Alkaliphilus metalliredigens QYMF]
          Length = 352

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 134/365 (36%), Positives = 204/365 (55%), Gaps = 30/365 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+ +  EE+E   L+IG      + R  Q ++W+  +GI+ ++ M+++S+++   
Sbjct: 1   MDKVDLLSLTMEEMESLFLEIG----EKKFRAKQAFQWVN-KGIKQYEEMTNLSKKLIKQ 55

Query: 64  LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L++   I +  I ++ +S  DGT K+L       I     IE V +  K   T C+S+QV
Sbjct: 56  LSEETRITHNRIEEKFVSKIDGTVKYLFLLDDGHI-----IEGVLMKYKHGFTACISTQV 110

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C FC + T  L+RNL A E++ Q+LL +                    G +ISNI
Sbjct: 111 GCAMGCQFCASTTGGLIRNLRAGEMIDQILLMQQ-----------------DQGERISNI 153

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V+MG GEPL N+D   + L I +D  GL+   R ITLST G VP I ++G  +I + LAI
Sbjct: 154 VLMGSGEPLHNYDETIRFLKIVNDPEGLNIGNRHITLSTCGLVPEIKKLGALQIPINLAI 213

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA ++ LR   +PI +KY ++ LI +C  Y   +N RRITFEY +++ +ND  ++A  
Sbjct: 214 SLHAPNDQLRKQTMPIAQKYTIDQLIQSCYDYLE-NNNRRITFEYALIEDVNDGEKEAHE 272

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L K+LKG+   +NLIP NP     Y  S    +  F + +K +G  + IR   G DI  A
Sbjct: 273 LSKLLKGLLCHVNLIPINPIEERTYQKSKDSQVKKFQQILKSNGIEATIRREMGTDIQGA 332

Query: 362 CGQLK 366
           CGQL+
Sbjct: 333 CGQLR 337


>gi|319947501|ref|ZP_08021733.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641]
 gi|319746441|gb|EFV98702.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641]
          Length = 362

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 214/368 (58%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL E   + G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYGLTRQELIEWAEENG----EKKFRATQIWEWLYRKRVQSFEEMTNLSKDLIETLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F I  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVINPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L + EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   +   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYKNVLSFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNDLRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 AELLKKIKKLSYVNLIPYNPVSEHDQYSRSPRERVMAFYDTLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|319892212|ref|YP_004149087.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161908|gb|ADV05451.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464690|gb|ADX76843.1| radical SAM enzyme, Cfr family [Staphylococcus pseudintermedius
           ED99]
          Length = 364

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 206/369 (55%), Gaps = 25/369 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
            +K+S+  +  +EL+  L + G        R  QI++W+Y + +  F+ M+++S+ +R L
Sbjct: 16  FEKQSIYSLRFDELQGWLKENG----QQSFRAKQIYEWLYDKRVDSFEEMTNLSKALRQL 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  HF+I     V  + S DGT K+L       +     IETV +      ++CV++QVG
Sbjct: 72  LADHFTITTLATVVRQESRDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L +                 ++S+IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSSIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG VP I    +E + +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLKIVNDDHSLNIGARHITVSTSGIVPRIYDFADESLQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R+ L+PINR Y ++ L++A ++Y      RRITFEY +  G+ND    A  L
Sbjct: 233 LHAANNEIRSKLMPINRAYDVDKLMEAIQYYQE-KTKRRITFEYGLFGGVNDQLEHAREL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K +   +NLIP N  P   Y+ + + DI  F + +K+ G ++ IR  +G DI AAC
Sbjct: 292 AKLIKPLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKKLGINATIRREQGADIDAAC 351

Query: 363 GQLKSLSKR 371
           GQL++  ++
Sbjct: 352 GQLRAKERQ 360


>gi|222151049|ref|YP_002560203.1| hypothetical protein MCCL_0800 [Macrococcus caseolyticus JCSC5402]
 gi|222120172|dbj|BAH17507.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 363

 Score =  225 bits (574), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 207/369 (56%), Gaps = 25/369 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
             K S+  +   EL+E L   G        R  QI+ W+YV+ +  F+ MS++S+E+R +
Sbjct: 15  FDKPSIYSLQLGELKEWLATHG----QQSFRAKQIYDWLYVKRVNSFEEMSNLSKELRKV 70

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F++   + V ++ S DGT K+L       +     IETV +      ++CV++QVG
Sbjct: 71  LEDNFTMTTLKTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 125

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L +              V  ++S++V
Sbjct: 126 CRIGCTFCASTLGGLKRNLEAGEIVAQVLNVQKALDE--------------VEERVSHVV 171

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEP  N++ +   L + +   GL+   R IT+STSG +P I     EE+ +  A+S
Sbjct: 172 IMGIGEPFENYEEMMDFLKVINHDDGLNIGARHITVSTSGIIPRIYDFADEELQINFALS 231

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH  +ND+R+ L+PINR Y LE L+++  +Y      RRITFEY +  G+ND    A  L
Sbjct: 232 LHGPNNDIRSRLMPINRAYDLEKLMESIEYYVN-KTGRRITFEYGLFGGVNDQVHHAKEL 290

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +++K +   +NLIP N  P  +Y+ + ++DI  F + +KR+G ++ IR   G DI AAC
Sbjct: 291 AQLIKHLNCHVNLIPVNHVPERDYVRTPKEDIFKFEKELKRNGINATIRREHGSDIDAAC 350

Query: 363 GQLKSLSKR 371
           GQL++  ++
Sbjct: 351 GQLRAKERQ 359


>gi|319953716|ref|YP_004164983.1| 23S rRNA m(2)a-2503 methyltransferase [Cellulophaga algicola DSM
           14237]
 gi|319422376|gb|ADV49485.1| 23S rRNA m(2)A-2503 methyltransferase [Cellulophaga algicola DSM
           14237]
          Length = 347

 Score =  225 bits (574), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 208/371 (56%), Gaps = 26/371 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M+ +KK+ +  + +E+L E  +  G        R +Q+++W++ +G   F+ M+++S+E 
Sbjct: 1   MDTIKKKDIRALTKEQLREFFVTNGDKA----FRGNQVYEWLWQKGAHSFEAMTNVSKET 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R +L Q+F I + ++   + S DGT K  +R     I     +E+V IP K+R T CVSS
Sbjct: 57  RDMLEQNFVINHIKVDVMQRSNDGTIKNAVRLHDDLI-----VESVLIPTKTRSTACVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL C FC T   K +RNL  +EI  QV+              I+        R +S
Sbjct: 112 QVGCSLDCKFCATSRLKRMRNLNPDEIYDQVVA-------------IDNESRLYFNRPLS 158

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVM 238
           NIV MGMGEPL N++NV K++ + +   GL  S +RI +STSG VP + R    +E+   
Sbjct: 159 NIVFMGMGEPLMNYNNVLKAIDMITSPEGLGMSPKRIVVSTSG-VPKMIRKMADDEVKFK 217

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLH+  +++R  ++P N  + L  L  + +++   + +R IT+EYV+ KGINDS +D
Sbjct: 218 LAVSLHSAIDEIRTSIMPFNANFTLTDLRQSLQYWYAKTRSR-ITYEYVIWKGINDSQKD 276

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
              L+   K  P+K+NLI +NP    E+  +    I  +   +++   +  +R  RG DI
Sbjct: 277 VDALVDFCKFAPSKVNLIEYNPIDDGEFQQASNAAIDMYVNTLEQHNIAVTVRRSRGKDI 336

Query: 359 LAACGQLKSLS 369
            AACGQL + S
Sbjct: 337 DAACGQLANKS 347


>gi|315639331|ref|ZP_07894493.1| cfr family radical SAM enzyme [Campylobacter upsaliensis JV21]
 gi|315480657|gb|EFU71299.1| cfr family radical SAM enzyme [Campylobacter upsaliensis JV21]
          Length = 356

 Score =  225 bits (574), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 199/354 (56%), Gaps = 34/354 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI +WIY +   DF  MS++ + +R  L +++     + V E+ S DG+ K+L   
Sbjct: 23  FRVKQICQWIYQKYADDFSKMSNLPKNLREELAKNYHFEPLKCVKEERSKDGSIKYLFE- 81

Query: 93  PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               +   + IE+V +P K             ++ T+CVSSQVGC   CSFC T    L 
Sbjct: 82  ----LKDGLRIESVLLPMKEEKFDGEGKRLSHAKFTICVSSQVGCRSGCSFCLTAKGGLK 137

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL+A EI+ Q+L  +                IP   R   NIV MGMGEPL N +NV K
Sbjct: 138 RNLSAGEIVGQILWIK------------RQNHIPYERR--VNIVYMGMGEPLDNLNNVAK 183

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I S +  L+ S RR T+STSG    I  +GE  +GV+LAISLHAV+++LR+ L+PIN
Sbjct: 184 AVRILSHNDTLAISVRRQTISTSGLAKQIKELGEMNLGVLLAISLHAVNDELRSKLMPIN 243

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y +  ++ A R +P +   +++ FEY+++ GIND    A  L+K+L GI AK+NLI F
Sbjct: 244 KAYNIASVMQAVREFP-IDMRKKVMFEYLLIDGINDKIEHAKELVKLLNGIKAKVNLILF 302

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
           NP  G  Y     ++ V F + + + G +  IR  +GLDI AACGQLK   K +
Sbjct: 303 NPHQGSIYKRPSLENAVKFQDLLSQKGVTCTIRESKGLDISAACGQLKEREKNL 356


>gi|308810124|ref|XP_003082371.1| from E. coli sequence gb|U02965. (ISS) [Ostreococcus tauri]
 gi|116060839|emb|CAL57317.1| from E. coli sequence gb|U02965. (ISS) [Ostreococcus tauri]
          Length = 602

 Score =  225 bits (574), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 127/291 (43%), Positives = 179/291 (61%), Gaps = 22/291 (7%)

Query: 81  SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140
           + DGTRK      A   GG VE  +V IP   R T+CVSSQ+GC++ C FC+T T  L +
Sbjct: 155 ASDGTRKVTYAL-ADDSGGIVE--SVLIPSGRRTTVCVSSQLGCAMNCQFCFTATMGLRK 211

Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
           NL+A +I+ QV+ AR +      C++         G ++SN+V MGMGEPL N D V K+
Sbjct: 212 NLSAAQIVEQVVRARRM------CDE---------GEEVSNVVFMGMGEPLHNIDEVLKA 256

Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
           + I  D  GL+FS+ ++T+STSG VP + R   E    LA+SL+A ++ +RN ++PINRK
Sbjct: 257 VDILLDPRGLAFSRNKVTVSTSGLVPQMERFLTESEASLAVSLNATTDYIRNWIMPINRK 316

Query: 261 YPLEMLIDAC-RHYPGLS---NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
           Y L+ L+    R +P      + R++ FEY+ML G+NDS  DA  LI+I K +P KINLI
Sbjct: 317 YNLDSLLGLLRREFPRTDLGRHQRQVFFEYIMLAGVNDSDEDADRLIEIAKSLPCKINLI 376

Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            FN   G E+ CSDQ+ I  F + +  +G +  IR  RG + ++ACGQL S
Sbjct: 377 YFNTHDGAEFKCSDQERIAAFRQRVSDAGVTCTIRVSRGDEEMSACGQLGS 427


>gi|37521648|ref|NP_925025.1| hypothetical protein gll2079 [Gloeobacter violaceus PCC 7421]
 gi|81709852|sp|Q7NIV3|RLMN_GLOVI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|35212646|dbj|BAC90020.1| gll2079 [Gloeobacter violaceus PCC 7421]
          Length = 348

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 198/363 (54%), Gaps = 33/363 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   EEL   +   G P      R  Q+ +W+Y RG+R    ++D  +  R  ++   
Sbjct: 5   LLGQSAEELRIWVESQGQPA----YRAQQLHRWLYQRGVRSLMEITDWPKAWREQVHS-V 59

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQVGCSLT 127
            +   ++V +  + DGT K+LL       G   E +ETV IP   R T+CVSSQVGC + 
Sbjct: 60  PVGRSQVVRQSAAADGTIKYLL------AGADGETVETVGIPAAERLTVCVSSQVGCPMA 113

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG     RNL   EI+ QVL  +            EG      GR++S++V MGM
Sbjct: 114 CRFCATGQSGFARNLGVHEIVDQVLTVQ------------EGF-----GRRVSHVVFMGM 156

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAV 246
           GEPL N   V ++L + +  +G+   +R+IT+ST G    I R+G  ++ + LA+SLHA 
Sbjct: 157 GEPLLNLGAVVQALRVLNGDIGIG--QRQITVSTVGVPGQIRRLGTYKLQITLAVSLHAP 214

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           + DLR  L+P  + YP+E L++ CR Y   +N RR++FEY +L GIND P  A  L  IL
Sbjct: 215 NQDLRLKLIPTAQHYPIEELLEDCRDYVETTN-RRVSFEYTLLAGINDEPHHARELAAIL 273

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +G  + +NLIP+NP  G EY    +  +  F   + R   ++ +R  RGL+  AACGQL+
Sbjct: 274 RGFQSHVNLIPYNPIEGVEYERPGEARVRAFERELVRHKIAASVRHTRGLEEAAACGQLR 333

Query: 367 SLS 369
             S
Sbjct: 334 RRS 336


>gi|172058977|ref|YP_001815437.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium
           sibiricum 255-15]
 gi|205829757|sp|B1YG36|RLMN_EXIS2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|171991498|gb|ACB62420.1| radical SAM enzyme, Cfr family [Exiguobacterium sibiricum 255-15]
          Length = 357

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 216/375 (57%), Gaps = 28/375 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K S+ G+  E++ E L   G    H   R  Q+W W+Y + +  F  M++++++   L
Sbjct: 1   MNKPSIYGLTLEQMTEWLSHQG----HKPFRAKQVWDWLYRKRVTTFAEMTNVNKDCLEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+Q F+I       ++ S DGT K+L +     +     IETV +  K   ++CV++QVG
Sbjct: 57  LDQSFAIDSMTQAVKQESADGTIKFLFKLYDGSL-----IETVLMRHKYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+L+A EI+ Q++  +  L D  G E+           ++S++V
Sbjct: 112 CNIGCSFCASGLIKKSRDLSAGEIVEQIMNVQHHL-DAVGKEE-----------RVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  NFDN+   L++  D  GL+   R IT+STSG    I +  + ++ V LAIS
Sbjct: 160 VMGIGEPFDNFDNMVDFLNVIKDHNGLAIGARHITVSTSGLADKIYKFADLKLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR  ++ INR  PLE L+ A  +Y   +N R+IT EY++L+G+ND    A+ L
Sbjct: 220 LHAPNNELRTQIMKINRAIPLEKLMPAIDYYVKTTN-RKITIEYILLRGVNDQKAQAIEL 278

Query: 303 IKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K+   K     +NLIP+NP     +Y  S  +DI TF + +K++G +  +R   G DI 
Sbjct: 279 AKLFEDKRHLTYVNLIPYNPVDEHGQYQRSTSEDISTFYDTLKKNGLNCGVRLEHGTDID 338

Query: 360 AACGQLKSLSKRIPK 374
           AACGQL+  SK+I K
Sbjct: 339 AACGQLR--SKQIKK 351


>gi|225424671|ref|XP_002262749.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296086557|emb|CBI32146.3| unnamed protein product [Vitis vinifera]
          Length = 439

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 127/331 (38%), Positives = 186/331 (56%), Gaps = 22/331 (6%)

Query: 38  IWKWIYVRGI--RDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR 95
           +WK +Y   I       +  ++++ + +L++H       + D   + DGTRK L      
Sbjct: 106 LWKRLYGNNIWAHCIDELEGLNKDFKSMLSEHAEFKALTLKDSIKASDGTRKILFTLDDG 165

Query: 96  CIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154
            +     IETV IP ++ R T+CVSSQVGC++ C FCYTG   L R+LTA EI+ Q + A
Sbjct: 166 LV-----IETVIIPCDRGRNTVCVSSQVGCAMNCQFCYTGRMGLTRHLTAAEIVEQAVYA 220

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
           R L     G               I+N+V MGMGEP  N ++V K+  I     GL FS 
Sbjct: 221 RRLFSSEVG--------------SITNVVFMGMGEPFHNIESVIKAADIMVHDQGLHFSP 266

Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           R++T+STSG VP +     E    LA+SL+A ++++RN ++PINRKY L +L+   R   
Sbjct: 267 RKVTVSTSGLVPQLKHFLRESNCALAVSLNATTDEVRNWVMPINRKYNLSLLLQTLREEL 326

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334
              +  ++ FEYVML G+NDS  DA  LI +++GIP K+NLI FNP  G ++  + ++ I
Sbjct: 327 RSKHNYKVLFEYVMLAGVNDSLEDARRLIDLVQGIPCKVNLISFNPHCGSQFKPTSEEKI 386

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           + F   +  +G    +R  RG D +AACGQL
Sbjct: 387 IEFRNILAEAGCIVFLRPSRGDDQMAACGQL 417


>gi|260171514|ref|ZP_05757926.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           D2]
          Length = 322

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 125/331 (37%), Positives = 186/331 (56%), Gaps = 25/331 (7%)

Query: 37  QIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARC 96
           QI  W+Y + +     M+++S + R LL Q++ +     VDE  S DGT K+L +     
Sbjct: 8   QIVSWLYEKKVASIDEMTNLSLKHRELLKQNYEVGAAAPVDEMRSVDGTVKYLYK----- 62

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
           +G    +E+VYIP+  R TLCVSSQVGC + C FC TG Q    NLTA +I+ Q+     
Sbjct: 63  VGENHFVESVYIPDDDRATLCVSSQVGCKMNCKFCMTGKQGYTANLTASQIINQI----- 117

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
                          +P    K++N+VMMGMGEPL N D V K+L + + + G ++S +R
Sbjct: 118 -------------HSLPERD-KLTNVVMMGMGEPLDNLDEVLKALELLTANYGYAWSPKR 163

Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           ITLST G    + R  EE    LAISLH+     R+ L+P  R Y +  +++  ++Y   
Sbjct: 164 ITLSTVGLRKGLQRFIEENDCHLAISLHSPLTAQRSELMPAERAYSITEMVELLKNYD-F 222

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
           S  RR++FEY++ KG+NDS   A  L+K+L+G+  ++NLI F+  PG +   +D   +  
Sbjct: 223 SKQRRLSFEYIVFKGLNDSQVYAKELLKLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTR 282

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F + +   G  + IR+ RG DI AACG L +
Sbjct: 283 FRDYLTSHGLFTTIRSSRGEDIFAACGMLST 313


>gi|15924208|ref|NP_371742.1| radical SAM family protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926801|ref|NP_374334.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus N315]
 gi|49483381|ref|YP_040605.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|57651787|ref|YP_186093.1| hypothetical protein SACOL1230 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160347|ref|YP_493808.1| hypothetical protein SAUSA300_1111 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194924|ref|YP_499724.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|148267709|ref|YP_001246652.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150393767|ref|YP_001316442.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151221340|ref|YP_001332162.1| hypothetical protein NWMN_1128 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979539|ref|YP_001441798.1| hypothetical protein SAHV_1208 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509390|ref|YP_001575049.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221142008|ref|ZP_03566501.1| hypothetical protein SauraJ_10305 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253315576|ref|ZP_04838789.1| hypothetical protein SauraC_05407 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731835|ref|ZP_04866000.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733544|ref|ZP_04867709.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006005|ref|ZP_05144606.2| hypothetical protein SauraM_06030 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257425271|ref|ZP_05601696.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427931|ref|ZP_05604329.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430564|ref|ZP_05606946.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433325|ref|ZP_05609683.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257436167|ref|ZP_05612214.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           M876]
 gi|257795726|ref|ZP_05644705.1| cfr family radical SAM enzyme [Staphylococcus aureus A9781]
 gi|258415950|ref|ZP_05682220.1| ribosomal large subunit methyltransferase N [Staphylococcus aureus
           A9763]
 gi|258419697|ref|ZP_05682664.1| cfr family radical SAM enzyme [Staphylococcus aureus A9719]
 gi|258423739|ref|ZP_05686625.1| cfr family radical SAM enzyme [Staphylococcus aureus A9635]
 gi|258438739|ref|ZP_05689892.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A9299]
 gi|258444555|ref|ZP_05692884.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A8115]
 gi|258447612|ref|ZP_05695756.1| cfr family radical SAM enzyme [Staphylococcus aureus A6300]
 gi|258449454|ref|ZP_05697557.1| cfr family radical SAM enzyme [Staphylococcus aureus A6224]
 gi|258452515|ref|ZP_05700521.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A5948]
 gi|258454833|ref|ZP_05702797.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A5937]
 gi|262051850|ref|ZP_06024066.1| hypothetical protein SA930_1400 [Staphylococcus aureus 930918-3]
 gi|269202833|ref|YP_003282102.1| hypothetical protein SAAV_1190 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892704|ref|ZP_06300939.1| cfr family radical SAM enzyme [Staphylococcus aureus A8117]
 gi|282903771|ref|ZP_06311659.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905535|ref|ZP_06313390.1| radical SAM enzyme Cfr family protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908511|ref|ZP_06316341.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282910790|ref|ZP_06318593.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913993|ref|ZP_06321780.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           M899]
 gi|282916467|ref|ZP_06324229.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           D139]
 gi|282918915|ref|ZP_06326650.1| radical SAM enzyme, Cfr family protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282920000|ref|ZP_06327729.1| cfr family radical SAM enzyme [Staphylococcus aureus A9765]
 gi|282924038|ref|ZP_06331714.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           C101]
 gi|282927558|ref|ZP_06335174.1| cfr family radical SAM enzyme [Staphylococcus aureus A10102]
 gi|283770279|ref|ZP_06343171.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus H19]
 gi|283957959|ref|ZP_06375410.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024142|ref|ZP_06378540.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus 132]
 gi|293501026|ref|ZP_06666877.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509985|ref|ZP_06668693.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           M809]
 gi|293526573|ref|ZP_06671258.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294848211|ref|ZP_06788958.1| cfr family radical SAM enzyme [Staphylococcus aureus A9754]
 gi|295407156|ref|ZP_06816957.1| LOW QUALITY PROTEIN: cfr family radical SAM enzyme [Staphylococcus
           aureus A8819]
 gi|295427703|ref|ZP_06820335.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275239|ref|ZP_06857746.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297245958|ref|ZP_06929817.1| cfr family radical SAM enzyme [Staphylococcus aureus A8796]
 gi|297591338|ref|ZP_06949976.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           MN8]
 gi|304381219|ref|ZP_07363872.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|81651279|sp|Q6GHL7|RLMN_STAAR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81694662|sp|Q5HGL4|RLMN_STAAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81705804|sp|Q7A600|RLMN_STAAN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81781713|sp|Q99UQ0|RLMN_STAAM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123098046|sp|Q2FZ66|RLMN_STAA8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123763308|sp|Q2FHM0|RLMN_STAA3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829891|sp|A7X1H8|RLMN_STAA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829892|sp|A6U137|RLMN_STAA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829893|sp|A5ISA3|RLMN_STAA9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829894|sp|A6QGB8|RLMN_STAAE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829895|sp|A8Z3Q4|RLMN_STAAT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|13701018|dbj|BAB42313.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246988|dbj|BAB57380.1| similar to Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|49241510|emb|CAG40196.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57285973|gb|AAW38067.1| conserved hypothetical protein TIGR00048 [Staphylococcus aureus
           subsp. aureus COL]
 gi|87126321|gb|ABD20835.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202482|gb|ABD30292.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740778|gb|ABQ49076.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946219|gb|ABR52155.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374140|dbj|BAF67400.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721674|dbj|BAF78091.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160368199|gb|ABX29170.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253724434|gb|EES93163.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728598|gb|EES97327.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271728|gb|EEV03866.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274772|gb|EEV06259.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278692|gb|EEV09311.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281418|gb|EEV11555.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284449|gb|EEV14569.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           M876]
 gi|257789698|gb|EEV28038.1| cfr family radical SAM enzyme [Staphylococcus aureus A9781]
 gi|257839286|gb|EEV63760.1| ribosomal large subunit methyltransferase N [Staphylococcus aureus
           A9763]
 gi|257844282|gb|EEV68664.1| cfr family radical SAM enzyme [Staphylococcus aureus A9719]
 gi|257845971|gb|EEV69999.1| cfr family radical SAM enzyme [Staphylococcus aureus A9635]
 gi|257847998|gb|EEV71991.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A9299]
 gi|257850048|gb|EEV74001.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A8115]
 gi|257853803|gb|EEV76762.1| cfr family radical SAM enzyme [Staphylococcus aureus A6300]
 gi|257857442|gb|EEV80340.1| cfr family radical SAM enzyme [Staphylococcus aureus A6224]
 gi|257859733|gb|EEV82575.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A5948]
 gi|257863216|gb|EEV85980.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A5937]
 gi|259160251|gb|EEW45279.1| hypothetical protein SA930_1400 [Staphylococcus aureus 930918-3]
 gi|262075123|gb|ACY11096.1| hypothetical protein SAAV_1190 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940710|emb|CBI49091.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282314010|gb|EFB44402.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           C101]
 gi|282316725|gb|EFB47099.1| radical SAM enzyme, Cfr family protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282319907|gb|EFB50255.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           D139]
 gi|282322061|gb|EFB52385.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325395|gb|EFB55704.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327573|gb|EFB57856.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282330827|gb|EFB60341.1| radical SAM enzyme Cfr family protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282590561|gb|EFB95638.1| cfr family radical SAM enzyme [Staphylococcus aureus A10102]
 gi|282594716|gb|EFB99700.1| cfr family radical SAM enzyme [Staphylococcus aureus A9765]
 gi|282595389|gb|EFC00353.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           C160]
 gi|282764701|gb|EFC04826.1| cfr family radical SAM enzyme [Staphylococcus aureus A8117]
 gi|283460426|gb|EFC07516.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus H19]
 gi|283470430|emb|CAQ49641.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790108|gb|EFC28925.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285816900|gb|ADC37387.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus 04-02981]
 gi|290920645|gb|EFD97708.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096031|gb|EFE26292.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466929|gb|EFF09447.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           M809]
 gi|294825011|gb|EFG41433.1| cfr family radical SAM enzyme [Staphylococcus aureus A9754]
 gi|294968009|gb|EFG44037.1| LOW QUALITY PROTEIN: cfr family radical SAM enzyme [Staphylococcus
           aureus A8819]
 gi|295128061|gb|EFG57695.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297177122|gb|EFH36376.1| cfr family radical SAM enzyme [Staphylococcus aureus A8796]
 gi|297576224|gb|EFH94940.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           MN8]
 gi|298694511|gb|ADI97733.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302332822|gb|ADL23015.1| Ribosomal RNA large subunit methyltransferase N, Rlmn
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302751041|gb|ADL65218.1| Ribosomal RNA large subunit methyltransferase N, Rlmn
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340202|gb|EFM06143.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|312438405|gb|ADQ77476.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312829612|emb|CBX34454.1| radical SAM superfamily protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315131009|gb|EFT86993.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315194104|gb|EFU24497.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|315198455|gb|EFU28784.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140967|gb|EFW32814.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144318|gb|EFW36084.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323442309|gb|EGA99939.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus O46]
 gi|329313887|gb|AEB88300.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329724771|gb|EGG61276.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329727514|gb|EGG63970.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329728784|gb|EGG65205.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 364

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 208/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
             K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R L
Sbjct: 16  FDKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQL 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F++     V ++ S DGT K+L       +     IETV +      ++CV++QVG
Sbjct: 72  LKDNFTVTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L               +   ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    +E I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +++R+ L+PINR Y +E LI+A ++Y   +N RR+TFEY +  G+ND    A  L
Sbjct: 233 LHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHAREL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|188995920|ref|YP_001930172.1| hypothetical protein PGN_2057 [Porphyromonas gingivalis ATCC 33277]
 gi|259491992|sp|B2RMI0|RLMN_PORG3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|188595600|dbj|BAG34575.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 352

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 141/363 (38%), Positives = 196/363 (53%), Gaps = 30/363 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK  L+GM  EEL    L++G+P    R    Q+ +WIYVR   DF  M++ISQ  R  L
Sbjct: 9   KKVVLLGMSLEELTTVALRMGMP----RFAGKQLAEWIYVRRATDFAEMTNISQANRQKL 64

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + + +      D + S DGT+K+L  FP   +G    +E+V IPE  R TLC+SSQVGC
Sbjct: 65  AEIYDLGRYPWSDVQCSVDGTKKYL--FP---VGEGRFVESVLIPEGDRATLCISSQVGC 119

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG Q    NL+A EIL Q+         F   E  E          ++N+V 
Sbjct: 120 KMDCLFCMTGKQGWNGNLSAAEILNQI---------FSVDEAAE----------LTNLVY 160

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N D V +S+   ++  G+ +S +RIT+ST G    + R   E    LA+SLH
Sbjct: 161 MGMGEPLDNTDEVLRSIEALTEPWGMGWSPKRITVSTIG-AKGLERFLAESRCHLAVSLH 219

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +   + R  L+P  + +P+   +D  R Y   S  RR++FEY++  G+ND  R A  L  
Sbjct: 220 SPFPEERRKLMPGEKAFPIMQTLDRIRAYD-FSGQRRVSFEYIVFDGLNDDMRHADELAA 278

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           IL+GIP +INLI F+  P      SD   +  F + ++  GY+  IR  RG DI AACG 
Sbjct: 279 ILRGIPCRINLIRFHKIPAVSLRSSDTARMEAFRKRMESHGYTCTIRASRGEDIFAACGM 338

Query: 365 LKS 367
           L +
Sbjct: 339 LST 341


>gi|327489556|gb|EGF21349.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1058]
          Length = 362

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 213/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+    ++    Q   + R SQIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEM----IEWAEAQGEKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR  ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND   +A  L
Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEEAKEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|149277498|ref|ZP_01883639.1| hypothetical protein PBAL39_04903 [Pedobacter sp. BAL39]
 gi|149231731|gb|EDM37109.1| hypothetical protein PBAL39_04903 [Pedobacter sp. BAL39]
          Length = 349

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/334 (38%), Positives = 188/334 (56%), Gaps = 22/334 (6%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+++W++ +  R F  MS++S+++R  L++H++I   E+ + + S D T K   R  
Sbjct: 30  RAKQVYQWLWEKSARTFDEMSNLSKDLRKKLDEHYAINVVEVNNSQFSNDHTIKNAFRLY 89

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              I     +E V IP   R T CVSSQVGCSLTC FC TG     RNL A+EI  QV+L
Sbjct: 90  DGNI-----VEGVLIPMDDRMTACVSSQVGCSLTCKFCATGYMDRKRNLNADEIYDQVVL 144

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                        I+     +    ++NIV MGMGEPL N+ NV KS+   +   GL+ S
Sbjct: 145 -------------IDQQAKKNYNAPLTNIVYMGMGEPLLNYANVMKSIERITAPDGLNMS 191

Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            +RIT+ST+G    I ++G++     LA+SLHA ++  RN ++PIN    L+ L +A ++
Sbjct: 192 YKRITVSTAGISKMIKKLGDDGAKFNLALSLHAANDKKRNEIMPINEHNSLKALEEALKY 251

Query: 273 YPGLSNARR-ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           Y   S  +  IT+EY++    ND   DA+ L K  K +P K+NLI +NP    +++ +  
Sbjct: 252 Y--FSKTKNPITYEYIVFNDFNDEIEDAMELAKFCKHVPCKVNLIEYNPIQFADFINAQG 309

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             I  FS  +K  G ++ IR  RG DI AACGQL
Sbjct: 310 DKIDAFSNYLKSQGVNTNIRRSRGKDIDAACGQL 343


>gi|311029975|ref|ZP_07708065.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp.
           m3-13]
          Length = 363

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 210/368 (57%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K S+  +   ELEE LL IG      + RT+QI++W+Y + +  F+ MS++S+ +R  L
Sbjct: 16  RKPSIYSLQLHELEEWLLSIG----EKKFRTTQIFEWLYQKRVTSFEEMSNLSKSLRDKL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + +++   + + ++ S DGT K+L       +     IETV +  +   ++CV++QVGC
Sbjct: 72  EETYALTTLKTIVQQTSSDGTMKFLFE-----LHDGYSIETVLMKHEYGNSVCVTTQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +              +  ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDE--------------MDERVSHVVI 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  NFD +   L I +    L+   R IT+STSG +P I +  +E + +  A+SL
Sbjct: 173 MGIGEPFDNFDEMLDFLKIINHDQALNIGARHITVSTSGIIPKIYKFADENMQINFAVSL 232

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PINR Y L  L+++ R+Y      RR++FEY +  G+ND    A  L 
Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMESIRYYIN-KTGRRVSFEYGLFGGVNDQVEHAEELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  +R  +G DI AACG
Sbjct: 292 QLLKGMKCHVNLIPVNYVPERDYVRTPKEQINLFEKTLKNLGVNVTVRREQGHDIDAACG 351

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 352 QLRAKERK 359


>gi|15615069|ref|NP_243372.1| hypothetical protein BH2506 [Bacillus halodurans C-125]
 gi|81786443|sp|Q9K9Y8|RLMN_BACHD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|10175126|dbj|BAB06225.1| BH2506 [Bacillus halodurans C-125]
          Length = 362

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 204/365 (55%), Gaps = 25/365 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S+  +  EELE  L + G P    + R +QI++W+Y + ++ FQ M+++S+++R  L +H
Sbjct: 18  SIYTLQFEELEMWLKEQGEP----KFRATQIFEWLYEKRVKQFQEMTNLSKDLRAKLEKH 73

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F++   + V ++ S DGT K+L       +     IETV +      ++CV++QVGC L 
Sbjct: 74  FNLTTLKTVTKQQSSDGTIKFLFE-----LHDGYSIETVVMRHNYGNSVCVTTQVGCRLG 128

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +    L RNL A EI+ QV+ A+  + +               G ++ +IV+MG+
Sbjct: 129 CTFCASTLGGLKRNLEAGEIVAQVVEAQRAMDE--------------QGERVGSIVVMGI 174

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEP  N+  +   L   +   GL+   R IT+STSG VP I +  +E + +  AISLHA 
Sbjct: 175 GEPFDNYQALMPFLKTVNHDKGLNIGARHITVSTSGVVPKIYQFADEGLQINFAISLHAP 234

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           + +LR+ L+P+NR +PL  L+DA R+Y      RR+TFEY +  G ND    A  L  ++
Sbjct: 235 NTELRSKLMPVNRAWPLPKLMDAIRYYID-KTGRRVTFEYGLFGGENDQVEHAEELADLI 293

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           K I   +NLIP N  P  +Y+ + +  I  F   +K  G +  IR  +G DI AACGQL+
Sbjct: 294 KDIKCHVNLIPVNYVPERDYVRTPRDQIFAFERTLKERGVNVTIRREQGHDIDAACGQLR 353

Query: 367 SLSKR 371
           +  ++
Sbjct: 354 AKERK 358


>gi|295706329|ref|YP_003599404.1| radical SAM enzyme, Cfr family [Bacillus megaterium DSM 319]
 gi|294803988|gb|ADF41054.1| radical SAM enzyme, Cfr family [Bacillus megaterium DSM 319]
          Length = 363

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K S+  +   +LE  L++ G      + R  QI+ W+YV+ + DF  MS++S+ +R  L
Sbjct: 16  QKPSIYSLEMHDLENWLVEHGDK----KFRAKQIFDWLYVKRVTDFDDMSNLSKGLREQL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              F++   + V ++ S DGT K+L       +     IETV +  +   ++CV++QVGC
Sbjct: 72  KDKFALTTLKTVVQQTSGDGTMKFLFE-----LHDGYTIETVLMRHEYGNSVCVTTQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +               G ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------QGERVSSVVI 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D + + L   +   GL+   R IT+STSG +P I +  +E + +  AISL
Sbjct: 173 MGIGEPFDNYDEMMRFLKTINSDDGLNIGARHITVSTSGIIPKIYKFADEKMQINFAISL 232

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +ND+R+ L+PINR Y L  L++A ++Y      RRI+FEY +  G+ND    A  L 
Sbjct: 233 HAPNNDIRSRLMPINRAYKLPDLMEAIKYYTD-KTGRRISFEYGLFGGVNDQVEHAEELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   +NLIP N  P  +Y+ + ++ I  F   +K+ G +  IR  +G DI AACG
Sbjct: 292 DLIKDVKCHVNLIPVNYVPERDYVRTPREQIFAFERTLKKRGVNVTIRREQGHDIDAACG 351

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 352 QLRAKERK 359


>gi|160933496|ref|ZP_02080884.1| hypothetical protein CLOLEP_02342 [Clostridium leptum DSM 753]
 gi|156867373|gb|EDO60745.1| hypothetical protein CLOLEP_02342 [Clostridium leptum DSM 753]
          Length = 359

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/365 (36%), Positives = 205/365 (56%), Gaps = 32/365 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+ +  M  +EL   +   G P      +  QI++W++ RG+  F+ M+D+S+ VR  L
Sbjct: 7   QKKDIKSMTLDELRADMKIQGQPS----YKALQIYRWLH-RGVSSFEEMTDLSKIVRQFL 61

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            + + I    + ++ +S  D T K+L  F   +C+      E V +  +   ++C+S+QV
Sbjct: 62  TEKYYISVARVENKLVSDYDNTIKYLFSFADGQCV------EAVLMEYQHGRSICISTQV 115

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C+FC TG     RNLTA E+L QV  A+                    G +ISNI
Sbjct: 116 GCKMGCTFCATGLGGFQRNLTASEMLSQVQAAQ-----------------KDAGVRISNI 158

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MGMGEPL N++ V + L + S   G++   R I+LST G V  I  + EE + + L++
Sbjct: 159 VLMGMGEPLDNYNQVIRFLRLVSSQEGMNLGMRHISLSTCGLVDRIYDLAEENLQLTLSV 218

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +N +R+  +P+NRKYP+E L+ ACR+Y G +  RRI+FEY M+ G+NDS   A  
Sbjct: 219 SLHAPNNAIRSRTMPVNRKYPIEELLKACRYYAGRT-GRRISFEYAMIDGVNDSDGCAKE 277

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L   LKG+   +NLIP NP     Y  S ++    F   ++R+G ++ +R   G DI A+
Sbjct: 278 LAARLKGMLCHVNLIPVNPVREAGYQKSGRERQQAFIRILERAGITATVRRTLGADINAS 337

Query: 362 CGQLK 366
           CGQL+
Sbjct: 338 CGQLR 342


>gi|265762562|ref|ZP_06091130.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           2_1_16]
 gi|263255170|gb|EEZ26516.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           2_1_16]
          Length = 344

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 195/362 (53%), Gaps = 29/362 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+GM   EL+     +G+P    +    QI  W+Y + +     M+++S + R LL 
Sbjct: 3   KYPLLGMTLTELQSVTKDLGMPAFAAK----QIASWLYDKKVTSIDEMTNLSLKHRELLK 58

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             + +     VDE  S DGT K+L +           +E VYIP++ R TLCVSSQVGC 
Sbjct: 59  GEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVGCK 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LTA +IL Q+                    +P    K++N+VMM
Sbjct: 114 MNCKFCMTGKQGFTASLTANQILNQI------------------AALPERD-KLTNVVMM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V K+L I + S G  +S +RITLS+ G    + R  EE    LAISLH+
Sbjct: 155 GMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISLHS 214

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R+ L+P  R + ++ ++D  ++Y   S  RR++FEY++ KG+NDS   A  L+K+
Sbjct: 215 PFPSQRSELMPAERAFSIKEMVDLLKNYD-FSKQRRLSFEYIVFKGVNDSLIYAKELLKL 273

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  ++NLI F+  PG +   +  + + +F + +   G  + IR  RG DI AACG L
Sbjct: 274 LRGLDCRVNLIRFHAIPGVDLEGTGMETMTSFRDYLTSHGLFTTIRASRGEDIFAACGML 333

Query: 366 KS 367
            +
Sbjct: 334 ST 335


>gi|53712370|ref|YP_098362.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
           fragilis YCH46]
 gi|81383319|sp|Q64XE8|RLMN_BACFR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|52215235|dbj|BAD47828.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 344

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 195/362 (53%), Gaps = 29/362 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+GM   EL+     +G+P    +    QI  W+Y + +     M+++S + R LL 
Sbjct: 3   KYPLLGMTLTELQSVTKDLGMPAFAAK----QIASWLYDKKVTSIDEMTNLSLKHRELLK 58

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             + +     VDE  S DGT K+L +           +E VYIP++ R TLCVSSQVGC 
Sbjct: 59  GEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVGCK 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LTA +IL Q+                    +P    K++N+VMM
Sbjct: 114 MNCKFCMTGKQGFTASLTANQILNQI------------------AALPEWD-KLTNVVMM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V K+L I + S G  +S +RITLS+ G    + R  EE    LAISLH+
Sbjct: 155 GMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISLHS 214

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R+ L+P  R + ++ ++D  ++Y   S  RR++FEY++ KG+NDS   A  L+K+
Sbjct: 215 PFPSQRSELMPAERAFSIKEMVDLLKNYD-FSKQRRLSFEYIVFKGVNDSLIYAKELLKL 273

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  ++NLI F+  PG +   +  + + +F + +   G  + IR  RG DI AACG L
Sbjct: 274 LRGLDCRVNLIRFHAIPGVDLEGAGMETMTSFRDYLTSHGLFTTIRASRGEDIFAACGML 333

Query: 366 KS 367
            +
Sbjct: 334 ST 335


>gi|60680539|ref|YP_210683.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
           fragilis NCTC 9343]
 gi|253563593|ref|ZP_04841050.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           3_2_5]
 gi|81316392|sp|Q5LGK5|RLMN_BACFN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|60491973|emb|CAH06734.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|251947369|gb|EES87651.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           3_2_5]
          Length = 344

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 195/362 (53%), Gaps = 29/362 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+GM   EL+     +G+P    +    QI  W+Y + +     M+++S + R LL 
Sbjct: 3   KYPLLGMTLTELQSVTKDLGMPAFAAK----QIASWLYDKKVTSIDEMTNLSLKHRELLK 58

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             + +     VDE  S DGT K+L +           +E VYIP++ R TLCVSSQVGC 
Sbjct: 59  GEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVGCK 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LTA +IL Q+                    +P    K++N+VMM
Sbjct: 114 MNCKFCMTGKQGFTASLTANQILNQI------------------AALPERD-KLTNVVMM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V K+L I + S G  +S +RITLS+ G    + R  EE    LAISLH+
Sbjct: 155 GMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISLHS 214

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R+ L+P  R + ++ ++D  ++Y   S  RR++FEY++ KG+NDS   A  L+K+
Sbjct: 215 PFPSQRSELMPAERAFSIKEMVDLLKNYD-FSKQRRLSFEYIVFKGVNDSLIYAKELLKL 273

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  ++NLI F+  PG +   +  + + +F + +   G  + IR  RG DI AACG L
Sbjct: 274 LRGLDCRVNLIRFHAIPGVDLEGAGMETMTSFRDYLTSHGLFTTIRASRGEDIFAACGML 333

Query: 366 KS 367
            +
Sbjct: 334 ST 335


>gi|255657702|ref|ZP_05403111.1| radical SAM enzyme, Cfr family [Mitsuokella multacida DSM 20544]
 gi|260849890|gb|EEX69897.1| radical SAM enzyme, Cfr family [Mitsuokella multacida DSM 20544]
          Length = 347

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 200/363 (55%), Gaps = 24/363 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + + G+  EEL+EAL    +P    + R  QI +W+Y RG   F  M+++S+++R  L+ 
Sbjct: 2   KDIFGLTVEELQEALQPFSLP----KYRARQIAEWMYQRGATGFADMTNLSKKLREELSG 57

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F I  P+  D   S DG T K+LL F          +ETV + +    ++CVS+Q GC+
Sbjct: 58  AFVIGRPKCKDRLDSSDGHTTKFLLEFT-----DGTAVETVLMRQPYGNSICVSTQAGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    + RNLT  EIL Q ++   +L         EG      G K+  +V+M
Sbjct: 113 MGCAFCASTLHGMARNLTTGEILSQAIVISDML-------RAEGQ-----GEKVDTVVIM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N++NV   + +  +   L  S R ITLSTSG VP + ++ EE I + L++SLH
Sbjct: 161 GSGEPLMNYENVLGFIRLLHEDYVLGLSYRSITLSTSGIVPQMYKLAEEGIPISLSVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A   +LR+ L+PINRKYPL  ++ A RHY  ++  RR+T+EY+++  +ND    A  L+ 
Sbjct: 221 APEQELRSTLMPINRKYPLVDVVRAARHYAEVTK-RRVTYEYILIDRVNDGEEQARELVS 279

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+G  A +NLIP NP      L      I  F   +     +  +R   G DI AACGQ
Sbjct: 280 LLRGQLASVNLIPINPVAERHLLRPSAARIDWFEHYLTAHHINVTVRREMGTDIQAACGQ 339

Query: 365 LKS 367
           L++
Sbjct: 340 LRN 342


>gi|125973091|ref|YP_001037001.1| radical SAM protein [Clostridium thermocellum ATCC 27405]
 gi|256004594|ref|ZP_05429572.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360]
 gi|281417286|ref|ZP_06248306.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20]
 gi|205829739|sp|A3DCX9|RLMN_CLOTH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|125713316|gb|ABN51808.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium thermocellum
           ATCC 27405]
 gi|255991466|gb|EEU01570.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360]
 gi|281408688|gb|EFB38946.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20]
 gi|316940688|gb|ADU74722.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 1313]
          Length = 349

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+ M  EELE  + ++G      + R  QI++W   +GI+D   M+++S+++R  L 
Sbjct: 4   KADLLSMTIEELENLMAEMG----EQKFRAKQIFQWTN-KGIKDIDAMTNLSKDLREKLK 58

Query: 66  QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +   I   E++ + +S  DGT K+L +     I     IE+V +      + C+SSQVGC
Sbjct: 59  ERAYINRLEVIKKFVSKIDGTIKYLFKLNDGNI-----IESVLMQYLHGYSACISSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +     VRNLT  E+L Q+L  ++                     +I N+V+
Sbjct: 114 KMGCKFCASTGVGFVRNLTPGEMLDQILTIQN-----------------DTKNRIGNVVI 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEPL N++NV K L + +   G++   R I++ST G VP I R+ EE I V L+ISL
Sbjct: 157 MGIGEPLDNYENVVKFLRLVNHKDGINLGARHISVSTCGLVPEILRLAEEKIPVTLSISL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++++R  ++PIN++Y ++ +I+AC+ Y   +N RRITFEY M+ G+NDS  +AL L 
Sbjct: 217 HAPNDEIREKIMPINKRYSIDKIIEACKIYTETTN-RRITFEYAMIDGLNDSKENALELA 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K ++G+   +NLIP N      +  S ++ I  F E ++R G  + +R   G DI AACG
Sbjct: 276 KRIRGMLCHVNLIPVNTVSDTGFKRSSREKITAFKEILERFGVETTVRRELGSDINAACG 335

Query: 364 QLK 366
           QL+
Sbjct: 336 QLR 338


>gi|323352763|ref|ZP_08087733.1| cfr family radical SAM enzyme [Streptococcus sanguinis VMC66]
 gi|322121799|gb|EFX93545.1| cfr family radical SAM enzyme [Streptococcus sanguinis VMC66]
          Length = 362

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 212/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+    ++    Q   + R SQIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEM----IEWAEAQGEKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIARLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR  ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKTGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|298384050|ref|ZP_06993611.1| radical SAM enzyme, Cfr family [Bacteroides sp. 1_1_14]
 gi|298263654|gb|EFI06517.1| radical SAM enzyme, Cfr family [Bacteroides sp. 1_1_14]
          Length = 345

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 199/364 (54%), Gaps = 29/364 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+  + ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 2   MSKYPLLGMTLIELQSLVKRLGMPG----FAAKQIASWLYDKKVTSIDEMTNLSLKYREL 57

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     V+E  S DGT K+L  +P   +G    +E+VYIP+  R TLC+SSQVG
Sbjct: 58  LKQNYEVGAEAPVEEMRSVDGTVKYL--YP---VGENHFVESVYIPDDERATLCISSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                    +P    K++N+V
Sbjct: 113 CKMNCKFCMTGKQGYSANLTAHQIINQI------------------HSLPERD-KLTNVV 153

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N + V K+L I + S G ++S +RIT+ST G    + R  EE    LAISL
Sbjct: 154 MMGMGEPLDNLEEVLKALDILTGSYGYAWSPKRITVSTVGLRKGLRRFIEESDCHLAISL 213

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R  L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 214 HSPVTAQRAELMPAEKAFSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 272

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  +INLI F+  PG     +D   +  F + +   G  + IR  RG DI AACG
Sbjct: 273 KLLRGLDCRINLIRFHSIPGVALEGADMDTMTRFRDYLTTHGLFTTIRASRGEDIFAACG 332

Query: 364 QLKS 367
            L +
Sbjct: 333 MLST 336


>gi|260889579|ref|ZP_05900842.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254]
 gi|260860990|gb|EEX75490.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254]
          Length = 365

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 203/369 (55%), Gaps = 26/369 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +N ++K  ++GM  E L++  ++IG+     +   SQ++ W++ + + DF   S+IS++ 
Sbjct: 11  INTIEKIDILGMDLESLQKKFVEIGLK----KFNASQVFDWLHNKLVFDFDEFSNISKKD 66

Query: 61  RHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           R +L + F +   E    ++S DG T K+L     R +     IE+V I  K+R TLCVS
Sbjct: 67  REILKERFYVAKLEFKTHQVSEDGDTEKFLFELKDRRL-----IESVLISHKNRHTLCVS 121

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ+GC + C FC T T    RNL+  EILLQ    +  L                 G K+
Sbjct: 122 SQIGCLIGCDFCATATMTYERNLSISEILLQYYYVQKHL--------------LQRGEKL 167

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238
            N+V MGMGEP  N+D V  S+++ +   G +FSKR  T+STSG V  I R  E E  + 
Sbjct: 168 GNVVYMGMGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRFTENENQIN 227

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLH+V +D+R+ ++PIN+++ ++ L ++   Y   +   RITFEY+++  +N  P D
Sbjct: 228 LAISLHSVKDDVRSEIMPINKRWGVKQLKESLLEYQKQT-KNRITFEYILIDDLNCEPED 286

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L   L      +NLIP+NP  G  Y    ++    F + +K    +  +R  +G DI
Sbjct: 287 ARELAGFLNSFSCLVNLIPYNPVGGKPYKRPSKQKQREFYKLLKDKNVNVTLRETKGQDI 346

Query: 359 LAACGQLKS 367
            AACGQLK+
Sbjct: 347 AAACGQLKA 355


>gi|327469049|gb|EGF14521.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK330]
          Length = 362

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+    ++    Q   + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F++  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFAVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR  ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|82750822|ref|YP_416563.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus RF122]
 gi|123768547|sp|Q2YXJ8|RLMN_STAAB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|82656353|emb|CAI80771.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 364

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 208/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
             K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R L
Sbjct: 16  FDKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQL 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F++     V ++ S DGT K+L       +     IETV +      ++CV++QVG
Sbjct: 72  LKDNFTVTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L               +   ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    +E I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMGFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +++R+ L+PINR Y +E LI+A ++Y   +N RR+TFEY +  G+ND    A  L
Sbjct: 233 LHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHAREL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|223043733|ref|ZP_03613776.1| radical SAM enzyme, Cfr family [Staphylococcus capitis SK14]
 gi|222442830|gb|EEE48932.1| radical SAM enzyme, Cfr family [Staphylococcus capitis SK14]
          Length = 364

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 208/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
             K+S+  +  +E+++ L+  G      + R  QI++W+Y + +     M+++S+++R +
Sbjct: 16  FDKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQV 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F++     V ++ S DGT K+L       +     IETV +  +   ++CV++QVG
Sbjct: 72  LKDNFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH   +++R+ L+PINR Y +E L++A ++Y   +N RR+TFEY +  G+ND    A +L
Sbjct: 233 LHGAKDEIRSRLMPINRAYNVEKLMEAIKYYQEQTN-RRVTFEYGLFGGVNDQLEHARDL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|301162076|emb|CBW21620.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 344

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 194/362 (53%), Gaps = 29/362 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+GM   EL+     +G+P         QI  W+Y + +     M+++S + R LL 
Sbjct: 3   KYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHRELLK 58

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             + +     VDE  S DGT K+L +           +E VYIP++ R TLCVSSQVGC 
Sbjct: 59  GEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVGCK 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LTA +IL Q+                    +P    K++N+VMM
Sbjct: 114 MNCKFCMTGKQGFTASLTANQILNQI------------------AALPERD-KLTNVVMM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V K+L I + S G  +S +RITLS+ G    + R  EE    LAISLH+
Sbjct: 155 GMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISLHS 214

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R+ L+P  R + ++ ++D  ++Y   S  RR++FEY++ KG+NDS   A  L+K+
Sbjct: 215 PFPSQRSELMPAERAFSIKEMVDLLKNYD-FSKQRRLSFEYIVFKGVNDSLIYAKELLKL 273

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  ++NLI F+  PG +   +  + + +F + +   G  + IR  RG DI AACG L
Sbjct: 274 LRGLDCRVNLIRFHAIPGVDLEGAGMEAMTSFRDYLTSHGLFTTIRASRGEDIFAACGML 333

Query: 366 KS 367
            +
Sbjct: 334 ST 335


>gi|154250366|ref|YP_001411191.1| ribosomal RNA large subunit methyltransferase N [Fervidobacterium
           nodosum Rt17-B1]
 gi|205829758|sp|A7HNQ1|RLMN_FERNB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|154154302|gb|ABS61534.1| radical SAM enzyme, Cfr family [Fervidobacterium nodosum Rt17-B1]
          Length = 348

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 206/368 (55%), Gaps = 36/368 (9%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +++++    EEL +   KIG+     + R  Q+W WIY +   DF  M+++S+E R+ L+
Sbjct: 2   RKNILDFSYEELVDEFSKIGLE----KFRVDQVWDWIYKKHEFDFDKMTNLSKEHRNTLS 57

Query: 66  QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + F I  PE++D +IS  D T K+L +     +     IE+V +    R T C+S+QVGC
Sbjct: 58  ERFYIYVPELLDMQISQIDKTTKFLWK-----LEDDNTIESVLLFHPDRVTACISTQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS--NI 182
              C+FC TG    VRNL+A EI+ Q++                        RK++  NI
Sbjct: 113 PAKCAFCATGQSGFVRNLSAGEIVSQIIAMEK-------------------HRKVNIGNI 153

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
           V MGMGEPL N+  V KS+ + +   G + S RRI++ST G    I  + +++  V LAI
Sbjct: 154 VYMGMGEPLLNYKEVVKSVKMLNHKKGKNISMRRISISTVGIPEKIVELAQDLPEVKLAI 213

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +N  R+I+VP+N+KY +E +I + + Y  ++   R+TFEY++++  ND   DA  
Sbjct: 214 SLHAPNNYKRDIIVPMNKKYSVEEIIQSAKEYQKIT-KNRVTFEYILIREFNDFVDDAEK 272

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKD---IVTFSECIKRSGYSSPIRTPRGLDI 358
           L ++LKG+ A +NLIP NP P    L  ++     I  F E + +    + IR  +G DI
Sbjct: 273 LAELLKGMGAYVNLIPVNPVPSSGELKFERPHHWAIERFKEVLDKHNIENEIRREKGTDI 332

Query: 359 LAACGQLK 366
            AACGQL+
Sbjct: 333 DAACGQLR 340


>gi|21282830|ref|NP_645918.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49486057|ref|YP_043278.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|300912218|ref|ZP_07129661.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|81649432|sp|Q6G9Z5|RLMN_STAAS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81762575|sp|Q8NX16|RLMN_STAAW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|21204269|dbj|BAB94966.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244500|emb|CAG42929.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|300886464|gb|EFK81666.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 364

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 208/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
             K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R L
Sbjct: 16  FDKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQL 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F++     V ++ S DGT K+L       +     IETV +      ++CV++QVG
Sbjct: 72  LKDNFTVTTLTTVVKQESKDGTIKFLYE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L               +   ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    +E I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +++R+ L+PINR Y +E LI+A ++Y   +N RR+TFEY +  G+ND    A  L
Sbjct: 233 LHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHAREL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|291279341|ref|YP_003496176.1| hypothetical protein DEFDS_0948 [Deferribacter desulfuricans SSM1]
 gi|290754043|dbj|BAI80420.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 360

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/334 (36%), Positives = 196/334 (58%), Gaps = 21/334 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-KISCDGTRKWLLR 91
            R +Q++KWIY +G+  F  M+D+  E R  L ++FS     +V++ +   DG+ K L R
Sbjct: 25  FRATQLFKWIYQKGVTSFDEMTDLPLEFRKKLIENFSFTKLTVVEQLESQLDGSIKVLFR 84

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                      IE+V + +  R T C+S+QVGC + C FC T    L+RNLT+ EI+ Q+
Sbjct: 85  LEDDNF-----IESVLMFDGKRVTACLSTQVGCRMGCQFCNTAKIGLIRNLTSAEIIRQI 139

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +  R+L                +  + ++N+V MGMGEPL NFDN+ KSL I  +   L+
Sbjct: 140 IYLRNL--------------AETKKKPLTNLVFMGMGEPLDNFDNLTKSLDIILNEEALN 185

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           FS R++T+ST G +  +  + +   V +AISL+AV+N +R+ L+P+N++YP+E +I+  +
Sbjct: 186 FSHRKVTVSTCGIMDKLNLLAKHYKVNIAISLNAVTNKIRSKLMPVNKRYPIEEIINGIK 245

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
             P +   +RIT EYV++ G+N++ +DA  L+K LKG+P K+NLI +N     ++     
Sbjct: 246 KLP-IPKRKRITLEYVLIDGLNNTTKDANLLVKQLKGLPIKVNLILYNKTKLSDFHSPQL 304

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              + F + +  +G ++ IR   G DI AACGQL
Sbjct: 305 NYALNFQKTLINNGIATFIRKSFGQDIEAACGQL 338


>gi|188997621|ref|YP_001931872.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932688|gb|ACD67318.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 354

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 208/358 (58%), Gaps = 29/358 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +ELE  +++ G      + R  QI KW+Y + +  +  M+D+S+++R+ L ++      E
Sbjct: 11  KELENFVVEKGWQ----KFRAKQIAKWLYKKKVSSYDEMTDLSKDIRNYLKENTEFNALE 66

Query: 75  IV-DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           +V  ++   DG+ K+L +     +     IETV I EK+  TLCVS+QVGC++ C FC+T
Sbjct: 67  LVMYQQSKIDGSIKFLWK-----LKDGNTIETVLINEKNHKTLCVSTQVGCAVGCKFCFT 121

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
               L+RNL   EI+ Q +  +  LG                  +ISNIV MGMGEPL N
Sbjct: 122 TKDGLIRNLETAEIVEQYINVQRFLG-------------MEEENRISNIVYMGMGEPLAN 168

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHAVSNDL 250
           ++NVKKS+ I +    +  S R+IT+S+SG +  I R+ E+     V LA+SL+A + D 
Sbjct: 169 YENVKKSVQIFTHPDMVGLSHRKITISSSGILHQIKRMYEDKEFPEVKLAVSLNASNQDQ 228

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R  L+PI++   L+ L+D  R  P L    RIT EYV++KG+NDS +DA  L+ +LK   
Sbjct: 229 RAFLMPISQTNTLQDLMDLLRSIP-LKPGWRITLEYVLMKGVNDSEQDAKRLVNLLKKDK 287

Query: 311 A--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
              K+NLIPFNP+P  E+   +++ ++ F + +  +  ++ IR  +G DI AACGQL+
Sbjct: 288 HRFKVNLIPFNPYPSAEFERPEEERVLKFEKILWDNNIATFIRWSKGRDIDAACGQLR 345


>gi|294500981|ref|YP_003564681.1| radical SAM enzyme, Cfr family [Bacillus megaterium QM B1551]
 gi|294350918|gb|ADE71247.1| radical SAM enzyme, Cfr family [Bacillus megaterium QM B1551]
          Length = 363

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K S+  +   +LE  L++ G      + R  QI+ W+YV+ + DF  MS++S+ +R  L
Sbjct: 16  QKPSIYSLEMHDLENWLVEHGDK----KFRAKQIFDWLYVKRVTDFDDMSNLSKGLREQL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              F++   + V ++ S DGT K+L       +     IETV +  +   ++CV++QVGC
Sbjct: 72  KDKFALTTLKTVVQQTSGDGTMKFLFE-----LHDGYTIETVLMRHEYGNSVCVTTQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +               G ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------QGERVSSVVI 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D + + L   +   GL+   R IT+STSG +P I +  +E + +  AISL
Sbjct: 173 MGIGEPFDNYDEMMRFLKTINSDDGLNIGARHITVSTSGIIPKIYKFADEKMQINFAISL 232

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +ND+R+ L+PINR Y L  L++A ++Y      RRI+FEY +  G+ND    A  L 
Sbjct: 233 HAPNNDIRSRLMPINRAYKLPDLMEAIKYYTD-KTGRRISFEYGLFGGVNDQVEHAEELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   +NLIP N  P  +Y+ + ++ I  F   +K+ G +  IR  +G DI AACG
Sbjct: 292 DLIKDVKCHVNLIPVNYVPERDYVRTPREQIFAFERTLKKRGVNVTIRREQGHDIDAACG 351

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 352 QLRAKERK 359


>gi|167464611|ref|ZP_02329700.1| Radical SAM family enzyme [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384327|ref|ZP_08058025.1| Fe-S-cluster-like AdoMet radical enzyme [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150829|gb|EFX44266.1| Fe-S-cluster-like AdoMet radical enzyme [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 343

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 197/337 (58%), Gaps = 22/337 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI+ W+YV+ + D   MS++S+ +R  +  +F  +  + +  + S DGT K+L   
Sbjct: 21  FRADQIFDWLYVKRVTDVNQMSNLSKALREKIKTNFEFVVLKEIANQRSQDGTVKFLFEL 80

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
             +       IETV +      ++CV++QVGC + C+FC +    L R+L+A EI+ Q++
Sbjct: 81  SDKN-----AIETVIMKHNYGNSVCVTTQVGCRVGCTFCASTLGGLKRDLSAGEIVAQIV 135

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A+ LL +                 ++S+IV+MG+GEP  N++ + K L I  D  GL  
Sbjct: 136 KAQKLLDE--------------TDERVSSIVIMGIGEPFENYEAMMKFLKIMIDPKGLHI 181

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            +R IT+STSG VPNI R  +E   + LAIS+HA ++ LR+ L+P+NR++P   LI+AC+
Sbjct: 182 GQRHITVSTSGIVPNIYRFADEKTQINLAISIHAPNDALRSKLMPVNRRFPFADLIEACK 241

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGCEYLCSD 330
           +Y   +  RRITFEY ++ G+ND    A  L ++L+  P   +NLIP N     +Y+ + 
Sbjct: 242 YYTQ-TTGRRITFEYALMGGVNDQAEHAEELAQVLQQFPMCHVNLIPVNYVMERKYVRTP 300

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           ++DI  F   ++R+  ++ IR  +G DI AACGQL++
Sbjct: 301 REDIFNFQRILERNKINATIRREQGSDIAAACGQLRA 337


>gi|257059331|ref|YP_003137219.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC
           8802]
 gi|256589497|gb|ACV00384.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 8802]
          Length = 340

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 206/370 (55%), Gaps = 39/370 (10%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            + +E+L+G   +EL + + K G P      R  Q+ +W+Y +G R    +S   +  R 
Sbjct: 2   LVTEETLLGKSLDELTQWVEKQGQP----TYRGKQLHQWLYEKGARSLDEISVFPKIWRE 57

Query: 63  LLNQHFSIIYP---EIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
            L     I YP     +D + ++ D TRK+LL     C+G  + IETV IP   R T+CV
Sbjct: 58  KL-----INYPIGRSTIDYRTVAPDATRKYLL-----CLGDGLIIETVGIPTAKRLTVCV 107

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC + C FC TG     R+L A EI+ QVL  +         ED +        R+
Sbjct: 108 SSQVGCPMACDFCATGKGGYQRHLRAHEIVDQVLTVQ---------EDFQ--------RR 150

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           +S++V MGMGEPL N + V KS+ I +  +G+   +R +T+ST G    I ++    + V
Sbjct: 151 VSHVVFMGMGEPLLNLEEVVKSVKILNQDIGIG--QRSLTISTVGLPQKIIQLAHHHLQV 208

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA +  LR  L+P  + YPL+ L+  CR Y  ++  RRI+FEYV+L G+ND P 
Sbjct: 209 TLAVSLHASNQPLRETLIPSAQHYPLKNLLADCREYVNIT-GRRISFEYVLLGGVNDLPE 267

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A+ L  +LKG  + +NLIP+NP    +Y   +Q  I TF + +++   +  +R  RGL+
Sbjct: 268 QAIELANLLKGFQSHVNLIPYNPIDEADYQRPNQTQIQTFVQVLEQHKIAVSVRYSRGLE 327

Query: 358 ILAACGQLKS 367
             AACGQL++
Sbjct: 328 ANAACGQLRA 337


>gi|324990694|gb|EGC22630.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK353]
 gi|324993429|gb|EGC25349.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK405]
 gi|327461703|gb|EGF08034.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1]
          Length = 362

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 212/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+    ++    Q   + R SQIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEM----IEWAEAQGEKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR  ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|241890016|ref|ZP_04777314.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379]
 gi|241863638|gb|EER68022.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379]
          Length = 377

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 205/369 (55%), Gaps = 25/369 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
             K S+  +  ++LEE ++ IG      + R  QI+ W+Y + I DF  M ++ + ++  
Sbjct: 18  FDKMSIYSIRLDQLEEYIVSIG----EKKFRAKQIFDWLYKKRITDFSEMKNVPKSLQEK 73

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L + F I   + + ++ S DGT K+L     +       IE+V +  K   +LCV++QVG
Sbjct: 74  LAEEFEITTLKTIIKQESADGTMKFLFELQDKYT-----IESVLMKNKYGNSLCVTTQVG 128

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L                 G +IS+IV
Sbjct: 129 CRIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQEL--------------DKKGERISSIV 174

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEP  N+D +   + I +     +   R IT+STSG VP I     E++ +  A+S
Sbjct: 175 IMGIGEPFENYDEMMDFIRIVNSDESFNIGARHITVSTSGIVPKIYDFANEKVQINFAVS 234

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++P+NR Y ++ L++A ++Y   +N RRITFEY ++  +ND    A  L
Sbjct: 235 LHAPTNELRSKIMPVNRAYNIDKLMEALKYYQETTN-RRITFEYGLMGKVNDQKEHAEKL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +I+KG+   +NLIP N  P   Y+ + + DI  F + +K++  +  IR  +G DI AAC
Sbjct: 294 SEIIKGLNCHVNLIPINYVPERNYVRTSKSDIFAFEKVLKKNKVNVTIRRTQGDDIDAAC 353

Query: 363 GQLKSLSKR 371
           GQL++  ++
Sbjct: 354 GQLRAKERK 362


>gi|146321533|ref|YP_001201244.1| ribosomal RNA large subunit methyltransferase N [Streptococcus suis
           98HAH33]
 gi|253752360|ref|YP_003025501.1| radical SAM superfamily protein [Streptococcus suis SC84]
 gi|253754186|ref|YP_003027327.1| radical SAM superfamily protein [Streptococcus suis P1/7]
 gi|253756120|ref|YP_003029260.1| radical SAM superfamily protein [Streptococcus suis BM407]
 gi|205829908|sp|A4W3A5|RLMN_STRS2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145692339|gb|ABP92844.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis 98HAH33]
 gi|251816649|emb|CAZ52290.1| radical SAM superfamily protein [Streptococcus suis SC84]
 gi|251818584|emb|CAZ56418.1| radical SAM superfamily protein [Streptococcus suis BM407]
 gi|251820432|emb|CAR47102.1| radical SAM superfamily protein [Streptococcus suis P1/7]
 gi|292558962|gb|ADE31963.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis GZ1]
 gi|319758764|gb|ADV70706.1| Fe-S-cluster redox protein [Streptococcus suis JS14]
          Length = 370

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 201/342 (58%), Gaps = 26/342 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89
           + R +QIW+W+Y   ++ F  M+++ + +   L +HF +  +   IV E  S DGT K+L
Sbjct: 24  KFRATQIWEWLYRSRVQSFAEMTNLPKSLIEKLEEHFVVNPLKQRIVQE--SKDGTIKYL 81

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
              P   +     IETV + +    ++CV++QVGC++ C+FC +G     R+LT+ EI+ 
Sbjct: 82  FELPDGML-----IETVLMHQHYGLSVCVTTQVGCNIGCTFCASGLIPKQRDLTSGEIVA 136

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q++L +  L +    E            ++S+IV+MG+GEPL N+DNV   L + +D  G
Sbjct: 137 QIMLVQKYLDERNQNE------------RVSHIVVMGIGEPLDNYDNVMTFLRVVNDDKG 184

Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           L+   R IT+STSG  P I     E + V LA+SLHA +NDLR+ ++ INRK+P+E+L +
Sbjct: 185 LAIGARHITVSTSGLAPKIREFAREGVQVNLAVSLHAPNNDLRSSIMRINRKFPIEVLFE 244

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-E 325
           A   Y  ++N RR+TFEY+ML  +ND    A  L  + K I   + INLIP+NP     +
Sbjct: 245 AIEDYIKVTN-RRVTFEYIMLNEVNDGVEQAQELADLTKNIRKLSYINLIPYNPVSEHDQ 303

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           Y  S ++  + F + +K++G +  +R   G DI AACGQL+S
Sbjct: 304 YSRSTKERTLAFFDVLKKNGVNCVVRQEHGTDIDAACGQLRS 345


>gi|317475867|ref|ZP_07935124.1| cfr family radical SAM enzyme [Bacteroides eggerthii 1_2_48FAA]
 gi|316908027|gb|EFV29724.1| cfr family radical SAM enzyme [Bacteroides eggerthii 1_2_48FAA]
          Length = 345

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 194/362 (53%), Gaps = 29/362 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+G+   EL+  +  +G+P         QI  W+Y + +     M+++S + R LL 
Sbjct: 2   KQPLLGLTLTELQAVVKNLGMPG----FAAKQIASWLYGKKVASIDEMTNLSLKHRELLK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             + +     VD   S DGT K+L R     +G    +E VYIPE+ R TLCVSSQVGC 
Sbjct: 58  DIYEVGGEAPVDAMRSVDGTVKYLYR-----VGEGHYVEAVYIPEEDRATLCVSSQVGCK 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLTA +I+ Q+          P  +            K++N+VMM
Sbjct: 113 MNCKFCMTGKQGFTGNLTAGQIINQI-------NSLPERD------------KLTNVVMM 153

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V K+L + + S G  +S +R+TLS+ G    + R  EE    LAISLH+
Sbjct: 154 GMGEPLDNLDEVLKALEVMTASYGYGWSPKRVTLSSVGLRKGLQRFVEESDCHLAISLHS 213

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  +++  R+Y   S  RR++FEY++ KG+NDS   A  L+K+
Sbjct: 214 PVPQQRRELMPAEKAFSITEIVELLRNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  +INLI F+  PG +   +D + +    + +   G  + IR  RG DI AACG L
Sbjct: 273 LRGLDCRINLIRFHAIPGVDLEGADMETMTALRDYLTSHGLFTTIRASRGEDIFAACGML 332

Query: 366 KS 367
            +
Sbjct: 333 ST 334


>gi|242373506|ref|ZP_04819080.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis M23864:W1]
 gi|242348869|gb|EES40471.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis M23864:W1]
          Length = 364

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 209/371 (56%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
            +K+S+  +  +E+++ L+  G      + R  QI++W+Y + +     M+++S+++R +
Sbjct: 16  FEKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNSIDEMTNLSKDLRQV 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F++     V ++ S DGT K+L       +     IETV +  +   ++CV++QVG
Sbjct: 72  LKDNFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH   +++R+ L+PINR Y +E L++A ++Y   +N RR+TFEY +  G+ND    A  L
Sbjct: 233 LHGAKDEIRSRLMPINRAYNVEKLMEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHAREL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++K +   +NLIP N  P   Y+ + ++DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKDLNCHVNLIPVNHVPERNYVKTPREDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|329767014|ref|ZP_08258542.1| ribosomal RNA large subunit methyltransferase N [Gemella
           haemolysans M341]
 gi|328837739|gb|EGF87364.1| ribosomal RNA large subunit methyltransferase N [Gemella
           haemolysans M341]
          Length = 377

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 205/369 (55%), Gaps = 25/369 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
             K S+  +  ++LEE ++ IG      + R  QI+ W+Y + + DF  M ++ + ++  
Sbjct: 18  FDKMSIYSLRLDQLEEYIVSIG----EKKFRAKQIYDWLYKKRVTDFSEMKNVPKSLQEK 73

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L + F I   + + ++ S DGT K+L     +       IE+V +  K   +LCV++QVG
Sbjct: 74  LAEEFEITTLKTIIKQESADGTMKFLFELQDKYT-----IESVLMKNKYGNSLCVTTQVG 128

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L                 G +IS+IV
Sbjct: 129 CRIGCTFCASTLGGLKRNLDAGEIVSQVLKVQQEL--------------DKKGERISSIV 174

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEP  N+D +   + I +     +   R IT+STSG VP I     E++ +  A+S
Sbjct: 175 IMGIGEPFENYDEMMDFIRIVNSDESFNIGARHITVSTSGIVPKIYDFANEKVQINFAVS 234

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++P+NR Y ++ L++A ++Y   +N RRITFEY ++  +ND    A  L
Sbjct: 235 LHAPTNELRSKIMPVNRAYNIDKLMEALKYYQETTN-RRITFEYGLMGKVNDQKEHAEKL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +I+KG+   +NLIP N  P   Y+ + + DI  F + +K++  +  IR  +G DI AAC
Sbjct: 294 SEIIKGLNCHVNLIPINYVPERNYVRTSKSDIFAFEKILKKNKVNVTIRRTQGDDIDAAC 353

Query: 363 GQLKSLSKR 371
           GQL++  ++
Sbjct: 354 GQLRAKERK 362


>gi|304408290|ref|ZP_07389938.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
 gi|304342759|gb|EFM08605.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
          Length = 357

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 211/364 (57%), Gaps = 26/364 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S+ G+ +++L   LL+ G    H + R +Q+W+W+Y + + D+  M+D++ +   LL +H
Sbjct: 7   SIYGLTQDQLAAWLLERG----HKKFRATQVWEWLYRKRVTDYAAMTDVNPDCIALLAEH 62

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F+I   E   ++ S DGT K+LLR     +     IETV +  K   ++CV++QVGC++ 
Sbjct: 63  FAITTLEEHTKQESTDGTIKFLLRLTDGNL-----IETVLMRHKFGLSVCVTTQVGCNIG 117

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC +G     R+LT+ EI+ Q++  +  L       D  G      G ++++IV+MG+
Sbjct: 118 CSFCASGLLAKSRDLTSGEIVGQIMKVQLHL-------DQAGQ-----GERVTHIVVMGI 165

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAV 246
           GEP  NF N+   +++  D  GL+   R IT+STSG    I    +  + V LAISLHA 
Sbjct: 166 GEPFDNFANMVDFINVVKDHKGLAIGPRHITVSTSGLANKIYEFTDSNLQVNLAISLHAP 225

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +++LR  ++ INR  P+  L++A  +Y   +N RRIT EY++LK +ND    AL L +++
Sbjct: 226 NDELRTRIMKINRAIPIAKLMEAIDYYLAKTN-RRITLEYILLKDVNDRKEHALELAELV 284

Query: 307 --KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
             +   A +NLIP+NP     +Y  S+Q  I  F + +K+ G S  +R   G DI AACG
Sbjct: 285 GERRSLANVNLIPYNPVDEHSQYQRSEQDSIREFYDTLKKQGVSCSVRLEHGTDIDAACG 344

Query: 364 QLKS 367
           QL+S
Sbjct: 345 QLRS 348


>gi|226227123|ref|YP_002761229.1| hypothetical protein GAU_1717 [Gemmatimonas aurantiaca T-27]
 gi|259491989|sp|C1A949|RLMN_GEMAT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|226090314|dbj|BAH38759.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 360

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 134/352 (38%), Positives = 188/352 (53%), Gaps = 29/352 (8%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R +Q++  ++ R +R F  M+++ + +R  L   F I   E+   + S DGT K+L R  
Sbjct: 32  RAAQVFGRLWQRPVRSFDEMTELPKALREGLAGSFRITALELTTRQKSMDGTEKFLFRMH 91

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              +     IETV IP+  R T C+SSQ GC+L C+FC TG     RNL   EI  QV  
Sbjct: 92  DGQL-----IETVAIPDGDRLTFCISSQAGCALQCAFCATGAMGFQRNLHPSEIAGQVRE 146

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
            R              M+ PS+    +NIV MGMGEPL N+  V  +LS+ +D   L   
Sbjct: 147 LR--------------MLTPSI--VPTNIVFMGMGEPLMNWKAVSPTLSLLNDPRALGIG 190

Query: 214 KRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            R IT+ST G +P I A         LAIS+HA S+ LR  L+P+N KYPL  +I A R 
Sbjct: 191 ARHITISTVGVLPGIVALAARPEQFRLAISIHAPSDALRRTLMPVNTKYPLADVIAAARE 250

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           +      RR+TFEYVML G+ND P  A  L ++ +   A +NLIP +P     +  S   
Sbjct: 251 FD-----RRVTFEYVMLGGVNDQPEHAAQLAQLARDCRAFVNLIPLHPGGSMGFSPSTTP 305

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS--LSKRIPKVPRQEMQI 382
            I  F++ I+  G  + +R  RGLDI AACGQL++  L +R+P   +   ++
Sbjct: 306 TINAFAKAIRARGVETAVRRSRGLDIAAACGQLRTERLGRRLPVAAQDHGEV 357


>gi|326405757|gb|ADZ62828.1| radical SAM family enzyme [Lactococcus lactis subsp. lactis CV56]
          Length = 365

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 215/372 (57%), Gaps = 29/372 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S+ G+ R++L E  ++ G      + R +Q+W W+Y + ++ F+ MS++S      LN+H
Sbjct: 12  SIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAAFIDKLNEH 67

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +   E V  + S DGT K+L   P + +     IETV + +    ++CV++QVGC++ 
Sbjct: 68  FILNTLEQVVVQESADGTVKYLFMLPDKMM-----IETVLMRQSYGLSVCVTTQVGCNMG 122

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +G  K  R++TA EI+ Q++L +          D  G+       ++S++V+MG+
Sbjct: 123 CTFCASGILKKERDVTAGEIVSQIMLVQKYF-------DERGL-----DERVSHVVVMGI 170

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHA 245
           GEP  N++++   L + +D  GL+   R IT+ST GF+P   +    E + + LAISLHA
Sbjct: 171 GEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISLHA 230

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+LR  L+ I R  PLE L +A  +Y   +N RR+T+EY+ML G NDSP  A  L  +
Sbjct: 231 PNNELRTSLMRITRNAPLEKLFEAIDYYTETTN-RRVTYEYIMLSGENDSPEIAQQLADL 289

Query: 306 LK--GIPAKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K     + +NLIP+NP     +Y  S + +   F + +K++G +  +R   G DI AAC
Sbjct: 290 IKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDAAC 349

Query: 363 GQLKSLSKRIPK 374
           GQL+  SK+I K
Sbjct: 350 GQLR--SKQIKK 359


>gi|167765103|ref|ZP_02437216.1| hypothetical protein BACSTE_03489 [Bacteroides stercoris ATCC
           43183]
 gi|167696731|gb|EDS13310.1| hypothetical protein BACSTE_03489 [Bacteroides stercoris ATCC
           43183]
 gi|290770009|gb|ADD61775.1| putative protein [uncultured organism]
          Length = 345

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 193/362 (53%), Gaps = 29/362 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+G+   EL+  +  +G+P         QI  W+Y + +     M+++S   R LL 
Sbjct: 2   KQPLLGLTLTELQTVVKNLGLPG----FAAKQIAAWLYDKKVASIDEMTNLSLRHRALLK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + + +     VD   S DGT K+L R      G    +E VYIP++ R TLCVSSQVGC 
Sbjct: 58  EIYEVGCEVPVDAMRSVDGTVKYLYR-----AGEGHYVEAVYIPDEDRATLCVSSQVGCK 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLTA +I+ Q+          P  +            K++N+VMM
Sbjct: 113 MNCKFCMTGKQGFTANLTANQIINQI-------NSLPERD------------KLTNVVMM 153

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V K+L + + S G  +S +RITLS+ G    + R  EE    LA+SLH+
Sbjct: 154 GMGEPLDNLDEVLKALEVMTSSYGYGWSPKRITLSSVGLRKGLQRFIEESDCHLAVSLHS 213

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  ++D  R+Y   S  RR++FEY++ KG+NDS   A  L+K+
Sbjct: 214 PVPLQRRELMPAEKAFSITEIVDLLRNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  +INLI F+  PG     +D + +  F + +   G  + IR  RG DI AACG L
Sbjct: 273 LRGLDCRINLIRFHAIPGVNLEGADMETMTAFRDYLTSHGLFTTIRASRGEDIFAACGML 332

Query: 366 KS 367
            +
Sbjct: 333 ST 334


>gi|218129787|ref|ZP_03458591.1| hypothetical protein BACEGG_01366 [Bacteroides eggerthii DSM 20697]
 gi|217987897|gb|EEC54222.1| hypothetical protein BACEGG_01366 [Bacteroides eggerthii DSM 20697]
          Length = 345

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 194/362 (53%), Gaps = 29/362 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+G+   EL+  +  +G+P         QI  W+Y + +     M+++S + R LL 
Sbjct: 2   KQPLLGLTLTELQAVVKNLGMPG----FAAKQIASWLYGKKVASIDEMTNLSLKHRDLLK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             + +     VD   S DGT K+L R     +G    +E VYIPE+ R TLCVSSQVGC 
Sbjct: 58  DIYEVGGEAPVDAMRSVDGTVKYLYR-----VGEGHYVEAVYIPEEDRATLCVSSQVGCK 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLTA +I+ Q+          P  +            K++N+VMM
Sbjct: 113 MNCKFCMTGKQGFTGNLTAGQIINQI-------NSLPERD------------KLTNVVMM 153

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V K+L + + S G  +S +R+TLS+ G    + R  EE    LAISLH+
Sbjct: 154 GMGEPLDNLDEVLKALEVMTASYGYGWSPKRVTLSSVGLRKGLQRFVEESDCHLAISLHS 213

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  +++  R+Y   S  RR++FEY++ KG+NDS   A  L+K+
Sbjct: 214 PVPQQRRELMPAEKAFSITEIVELLRNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  +INLI F+  PG +   +D + +    + +   G  + IR  RG DI AACG L
Sbjct: 273 LRGLDCRINLIRFHAIPGVDLEGADMETMTALRDYLTSHGLFTTIRASRGEDIFAACGML 332

Query: 366 KS 367
            +
Sbjct: 333 ST 334


>gi|225418643|ref|ZP_03761832.1| hypothetical protein CLOSTASPAR_05867 [Clostridium asparagiforme
           DSM 15981]
 gi|225041830|gb|EEG52076.1| hypothetical protein CLOSTASPAR_05867 [Clostridium asparagiforme
           DSM 15981]
          Length = 368

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/357 (36%), Positives = 203/357 (56%), Gaps = 29/357 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  EELE  L ++G        R  QI+ W++V+    F+ M+ IS+E++  L+   S+ 
Sbjct: 16  MTPEELEAFLKELGEKP----FRAKQIYDWLHVKLAERFEEMTSISKELQRKLDAACSLT 71

Query: 72  YPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
              +VDEKIS  DGTRK+L       I     IE+V++      ++C+SSQ GC + C F
Sbjct: 72  CLRVVDEKISTIDGTRKYLFALADGNI-----IESVWMQYHHGNSVCISSQAGCRMGCRF 126

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +    L RNL   E+L Q+   + + G+                 ++SN+V+MG GEP
Sbjct: 127 CASTLDGLARNLRPSEMLDQIYRIQRITGE-----------------RVSNVVVMGSGEP 169

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
           + N+DN+ + + + S   GL+ S+R +T+ST G VP I R+ EE   + LA+SLHA  ++
Sbjct: 170 MDNYDNLVRFIRLISHEKGLNISQRNLTVSTCGLVPEIRRLAEEGFQITLALSLHAPDDE 229

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           +R  L+PI  +Y L+ ++ ACR+Y      RR+TFEY ++ G+ND+ R+A  L K+++  
Sbjct: 230 VRKTLMPIANRYCLKDVLAACRYYYQ-QTGRRLTFEYSLVHGVNDNLREAAALAKLIRHE 288

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
              +NLIP NP    +++ S QK+I  F   ++++G +  IR   G DI  ACGQL+
Sbjct: 289 HGHVNLIPVNPIKERDFVQSGQKEIQDFKNLLEKNGINVTIRREMGRDIGGACGQLR 345


>gi|304316971|ref|YP_003852116.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778473|gb|ADL69032.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 343

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 207/369 (56%), Gaps = 33/369 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L  M  +ELE+  + IG      + R  Q+++WIY RG+ +F+ M+D+  E+R  LN  
Sbjct: 3   DLKNMTIDELEKFFVDIG----ETKYRAKQVFQWIY-RGVTNFEEMTDLKIELRKKLNSI 57

Query: 68  FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   +I  + +S  D T K+L       I     +E V I      T C+S+QVGC++
Sbjct: 58  AYISSLKIAQKLVSDADETAKYLFLLDDENI-----VEGVAIKYSYGNTSCISTQVGCNM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +G    VRNL A E++ +VL+  +  G                  KISNIV+MG
Sbjct: 113 KCSFCASGIGGKVRNLKASEMVDEVLIMDNDYG------------------KISNIVLMG 154

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N++ V K + I ++  G+    R IT+ST G VP I     E +GV L+ISLHA
Sbjct: 155 SGEPFDNYEEVMKFIKIVNNPFGMGVGIRHITISTCGIVPKIYDFANEGLGVNLSISLHA 214

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++DLR  L+PIN+ YP++ LI AC++Y   ++ RR+TFEY ++K +ND+   ++ L K+
Sbjct: 215 PTDDLRTQLMPINKVYPIKDLIKACKYYIDKTH-RRVTFEYSLIKDVNDNYEMSVKLSKL 273

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+   +NLIP N      Y  +D + I+ F   ++++G +  +R   G DI AACGQL
Sbjct: 274 LRGLLCHVNLIPINYVDEIGYKKADNEKIIAFKNTLEKNGITCTVRRELGSDINAACGQL 333

Query: 366 --KSLSKRI 372
             K L+ R+
Sbjct: 334 RRKYLAGRV 342


>gi|15675432|ref|NP_269606.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes M1 GAS]
 gi|21910720|ref|NP_664988.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS315]
 gi|28895590|ref|NP_801940.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes SSI-1]
 gi|56807972|ref|ZP_00365785.1| COG0820: Predicted Fe-S-cluster redox enzyme [Streptococcus
           pyogenes M49 591]
 gi|71903862|ref|YP_280665.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS6180]
 gi|71911074|ref|YP_282624.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS5005]
 gi|94994765|ref|YP_602863.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS10750]
 gi|209559696|ref|YP_002286168.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes NZ131]
 gi|81620716|sp|Q99YU5|RLMN_STRP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81706663|sp|Q7CEX7|RLMN_STRP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|122986830|sp|Q1J5R7|RLMN_STRPF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123747764|sp|Q48SK0|RLMN_STRPM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807217|sp|B5XMB1|RLMN_STRPZ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|13622621|gb|AAK34327.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|21904923|gb|AAM79791.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|28810839|dbj|BAC63773.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|71802957|gb|AAX72310.1| radical SAM family enzyme [Streptococcus pyogenes MGAS6180]
 gi|71853856|gb|AAZ51879.1| radical SAM family enzyme [Streptococcus pyogenes MGAS5005]
 gi|94548273|gb|ABF38319.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS10750]
 gi|209540897|gb|ACI61473.1| hypothetical protein Spy49_1185c [Streptococcus pyogenes NZ131]
          Length = 359

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 209/368 (56%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G  Q     R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 2   KPSIYSLTRDELIAWAVERGQKQ----FRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   +V E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DSFCVNPLKQRVVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L + EI  Q++L +    D               G ++S++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L + +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ +NR +PLE L  A  +Y   +N RR+TFEY+ML  +NDS + A  L
Sbjct: 219 LHAPNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTN-RRVTFEYIMLNEVNDSIKQAQEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|297530651|ref|YP_003671926.1| radical SAM enzyme, Cfr family [Geobacillus sp. C56-T3]
 gi|297253903|gb|ADI27349.1| radical SAM enzyme, Cfr family [Geobacillus sp. C56-T3]
          Length = 365

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 201/365 (55%), Gaps = 25/365 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S+  +  +EL+E L    + Q     R +QI++W+Y   + DF  M+++ + +R  L   
Sbjct: 21  SIYSLTLDELKEWL----VAQGEKPFRATQIYEWLYQNRVTDFADMTNLPKRLREQLASS 76

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           FSI   + V ++ S DGT K+L       +     IETV +      ++CV++QVGC + 
Sbjct: 77  FSITTLKTVVKQTSKDGTIKFLFE-----LHDGYSIETVLMRHHYGNSVCVTTQVGCRIG 131

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +    L R+L A EI+ QV+  +  L D                 ++S+IV+MG+
Sbjct: 132 CTFCASTLGGLKRHLEAGEIVAQVVQVQKALDD--------------TNERVSSIVVMGI 177

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEP  N+D + K L I +   GL+   R IT+STSG +P I +  +E + +  AISLHA 
Sbjct: 178 GEPFDNYDALIKFLRIVNHPKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHAP 237

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N+LR  L+PIN+ YPL  L++A R+Y      RR+TFEY +  G+ND    A  L +++
Sbjct: 238 TNELRTKLMPINKAYPLPKLMEAVRYYIE-KTGRRVTFEYGLFGGVNDQLEHAEQLAELI 296

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KG+   +NLIP N  P   Y+ + +  I  F   +K+ G +  IR   G DI AACGQL+
Sbjct: 297 KGLKCHVNLIPVNYVPERNYVRTPRSQIFAFERALKKHGINVTIRREHGHDIDAACGQLR 356

Query: 367 SLSKR 371
           +  ++
Sbjct: 357 AKERK 361


>gi|299821377|ref|ZP_07053265.1| cfr family radical SAM enzyme [Listeria grayi DSM 20601]
 gi|299817042|gb|EFI84278.1| cfr family radical SAM enzyme [Listeria grayi DSM 20601]
          Length = 367

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/382 (35%), Positives = 219/382 (57%), Gaps = 32/382 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K S+ G+  E+L + L    + +     R  QIW W+Y + +R F  M+++ +E   L
Sbjct: 1   MSKSSIYGITLEKLTDWL----VERDQKGFRAKQIWDWLYRKRVRSFAEMTNVPKETLAL 56

Query: 64  LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L + F    +  EI+ E  S DGT K+L +     +     IETV + +K   ++CV++Q
Sbjct: 57  LEESFVMETLEKEIIQE--SKDGTTKYLFKLQDGNL-----IETVLMKQKYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  K  R+L+A EI+ Q++  +  L D    E            ++S+
Sbjct: 110 VGCNIGCTFCASGILKKSRDLSAGEIVEQIMNVQYYLDDRGSDE------------RVSH 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
           IV+MG+GEP  N++N+   L + +   GL+   R IT+STSG  P I     E++ V LA
Sbjct: 158 IVVMGIGEPFDNYENLMNFLHVVNSDSGLAIGARHITVSTSGLAPKIKEFADEDLQVNLA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +N+LR  ++ INR + +E L++A  +Y   +N RR+TFEY+MLK +ND  ++A 
Sbjct: 218 ISLHAPNNELRTQIMRINRTFSIETLMEAIEYYIEKTN-RRVTFEYIMLKDVNDHVKEAE 276

Query: 301 NLIKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L ++++     A +N+IP+NP     +Y  S ++ I  F   +K++G +  +R   G D
Sbjct: 277 ELAQLIRPYSQLAYVNMIPYNPVAEHIDYERSTEESINAFYHVLKKNGINCVVRREHGTD 336

Query: 358 ILAACGQLKSLSKRIPKVPRQE 379
           I AACGQL+  SK+I +V  +E
Sbjct: 337 IDAACGQLR--SKQIKRVGIRE 356


>gi|56419709|ref|YP_147027.1| ribosomal RNA large subunit methyltransferase N [Geobacillus
           kaustophilus HTA426]
 gi|81347651|sp|Q5L0S1|RLMN_GEOKA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|56379551|dbj|BAD75459.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 365

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 201/365 (55%), Gaps = 25/365 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S+  +  +EL+E L    + Q     R +QI++W+Y   + DF  M+++ + +R  L   
Sbjct: 21  SIYSLTLDELKEWL----VAQGEKPFRATQIYEWLYQNRVTDFADMTNLPKRLREQLASS 76

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           FSI   + V ++ S DGT K+L       +     IETV +      ++CV++QVGC + 
Sbjct: 77  FSITTLKTVVKQTSKDGTIKFLFE-----LHDGYSIETVLMRHNYGNSVCVTTQVGCRIG 131

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +    L R+L A EI+ QV+  +  L D                 ++S+IV+MG+
Sbjct: 132 CTFCASTLGGLKRHLEAGEIVAQVVQVQKALDD--------------TNERVSSIVVMGI 177

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEP  N+D + K L I +   GL+   R IT+STSG +P I +  +E + +  AISLHA 
Sbjct: 178 GEPFDNYDALIKFLRIVNHPKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHAP 237

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N+LR  L+PIN+ YPL  L++A R+Y      RR+TFEY +  G+ND    A  L +++
Sbjct: 238 TNELRTKLMPINKAYPLPKLMEAVRYYIE-KTGRRVTFEYGLFGGVNDQLEHAEQLAELI 296

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KG+   +NLIP N  P   Y+ + +  I  F   +K+ G +  IR   G DI AACGQL+
Sbjct: 297 KGLKCHVNLIPVNYVPERNYVRTPRSQIFAFERALKKHGINVTIRREHGHDIDAACGQLR 356

Query: 367 SLSKR 371
           +  ++
Sbjct: 357 AKERK 361


>gi|237711138|ref|ZP_04541619.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|265750725|ref|ZP_06086788.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_33FAA]
 gi|229454982|gb|EEO60703.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263237621|gb|EEZ23071.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_33FAA]
          Length = 349

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 194/369 (52%), Gaps = 29/369 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G   +E+++ +  +G+P    +    QI  W+Y + +     M+++S + R  L 
Sbjct: 5   KTALLGRTLDEIQQIVRNLGMP----KFAAKQIASWLYDKKVETIDEMTNLSLKHREALK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + + +     V+E  S DGT K+L R P R       IE VYIP++ R TLCVSSQVGC 
Sbjct: 61  EGYEVGASAPVEEMRSVDGTVKYLFRTPTRNF-----IEAVYIPDEDRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLTA +IL Q+                    IP    K++N+V M
Sbjct: 116 MNCKFCMTGKQGFTANLTANQILNQIY------------------SIPE-REKLTNLVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP  N D V K L I +   G  +S +RIT+S+ G    + R   E    LAIS+H 
Sbjct: 157 GMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMHT 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  +ID   +Y   S  RR++FEY++ KG+NDS   A  ++K+
Sbjct: 217 PIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNDSLIYAKEIVKL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GI  ++NLI F+  P  +    D + + TF + + + G  + IR  RG DI AACG L
Sbjct: 276 LRGIECRVNLIRFHAIPDVDLEGVDMEAMTTFRDYLTQHGVFATIRASRGEDIFAACGML 335

Query: 366 KSLSKRIPK 374
            +  ++  K
Sbjct: 336 STAKQQKEK 344


>gi|261419372|ref|YP_003253054.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp.
           Y412MC61]
 gi|319766187|ref|YP_004131688.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC52]
 gi|261375829|gb|ACX78572.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC61]
 gi|317111053|gb|ADU93545.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC52]
          Length = 365

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 201/365 (55%), Gaps = 25/365 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S+  +  +EL+E L    + Q     R +QI++W+Y   + DF  M+++ + +R  L   
Sbjct: 21  SIYSLTLDELKEWL----VAQGEKPFRATQIYEWLYKNRVTDFADMTNLPKRLREQLASS 76

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           FSI   + V ++ S DGT K+L       +     IETV +      ++CV++QVGC + 
Sbjct: 77  FSITTLKTVVKQTSKDGTIKFLFE-----LHDGYSIETVLMRHNYGNSVCVTTQVGCRIG 131

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +    L R+L A EI+ QV+  +  L D                 ++S+IV+MG+
Sbjct: 132 CTFCASTLGGLKRHLEAGEIVAQVVQVQKALDD--------------TNERVSSIVVMGI 177

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEP  N+D + K L I +   GL+   R IT+STSG +P I +  +E + +  AISLHA 
Sbjct: 178 GEPFDNYDALIKFLRIVNHPKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHAP 237

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N+LR  L+PIN+ YPL  L++A R+Y      RR+TFEY +  G+ND    A  L +++
Sbjct: 238 TNELRTKLMPINKAYPLPKLMEAVRYYIE-KTGRRVTFEYGLFGGVNDQLEHAEQLAELI 296

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KG+   +NLIP N  P   Y+ + +  I  F   +K+ G +  IR   G DI AACGQL+
Sbjct: 297 KGLKCHVNLIPVNYVPERNYVRTPRSQIFAFERALKKHGINVTIRREHGHDIDAACGQLR 356

Query: 367 SLSKR 371
           +  ++
Sbjct: 357 AKERK 361


>gi|223984316|ref|ZP_03634459.1| hypothetical protein HOLDEFILI_01753 [Holdemania filiformis DSM
           12042]
 gi|223963716|gb|EEF68085.1| hypothetical protein HOLDEFILI_01753 [Holdemania filiformis DSM
           12042]
          Length = 347

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 206/357 (57%), Gaps = 25/357 (7%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           LEE +L +G      + R  QI++W+Y +    F  M+D+S+E+   L + F I   ++V
Sbjct: 12  LEELVLSLGWK----KYRADQIFQWLYRKHATSFDQMTDLSKEMIAALKEQFCINPIQLV 67

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
           ++++S DGT K+L       +G    +E V +      +LCV+SQ+GC++ C+FC +G  
Sbjct: 68  EKQVSRDGTVKFLFE-----LGDGALVECVLMTYNYGRSLCVTSQIGCNMGCTFCASGLL 122

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
           K  R+LT+ E++ QV+  +              + +     +IS++V+MG GEP  N+DN
Sbjct: 123 KKQRDLTSGEMVAQVMTVQ--------------LELDKEEDRISHVVVMGTGEPFDNYDN 168

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILV 255
           V    +  +   GL+   R IT+STSG +P+I R   E     LAISLHA +++LR+ ++
Sbjct: 169 VLNFCNTINHDKGLAIGARHITISTSGLIPSIDRFAAEHKQYNLAISLHAPTDELRSRIM 228

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
           P+N+ YPL  L+   R Y  + N RR+TFEY++L+G+ND+   A+ L  +++G+ A +NL
Sbjct: 229 PVNKAYPLGPLMACLRRYS-VENNRRLTFEYILLQGVNDTNEMAVKLAALIRGMNAYVNL 287

Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
           IP+N      Y  +D K  + F + + + G  + +R   G DI AACGQL++  +R+
Sbjct: 288 IPYNQVDENGYKSTDYKSAMRFYDVLMKQGVKATLRQEHGNDIDAACGQLRAKHERM 344


>gi|50914628|ref|YP_060600.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS10394]
 gi|139473446|ref|YP_001128162.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes str. Manfredo]
 gi|81371810|sp|Q5XAZ6|RLMN_STRP6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829905|sp|A2RDK1|RLMN_STRPG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|50903702|gb|AAT87417.1| Florfenicol resistance protein [Streptococcus pyogenes MGAS10394]
 gi|134271693|emb|CAM29926.1| radical SAM superfamily protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 359

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 209/368 (56%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G  Q     R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 2   KPSIYSLTRDELIAWAVERGQKQ----FRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   +V E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DSFCVNPLKQRVVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L + EI  Q++L +    D               G ++S++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L + +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ +NR +PLE L  A  +Y   +N RR+TFEY+ML  +NDS + A  L
Sbjct: 219 LHAPNNDLRSRIMRVNRSFPLEKLFSAIEYYIEKTN-RRVTFEYIMLNEVNDSIKQAQEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|329962041|ref|ZP_08300052.1| 23S rRNA m2A2503 methyltransferase [Bacteroides fluxus YIT 12057]
 gi|328530689|gb|EGF57547.1| 23S rRNA m2A2503 methyltransferase [Bacteroides fluxus YIT 12057]
          Length = 346

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 195/364 (53%), Gaps = 29/364 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+ L+G+   EL+  +  +G+P    R    QI  W+Y + +     M+++S + R  
Sbjct: 1   MQKQPLLGLTLSELQSVVKNLGMPGFAAR----QIASWLYDKKVTSIDEMTNLSLKHREY 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L   + +     VD   S DGT K+L +      G    +E VYIP++ R TLCVSSQVG
Sbjct: 57  LKDAYEVGAAAPVDAMRSIDGTVKYLYQ-----AGEGHFVEAVYIPDEDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+          P  +            K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTANLTANQIINQI-------SSLPERD------------KLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L I + S G S+S +RITLS+ G    + R  EE    LA+SL
Sbjct: 153 MMGMGEPLDNLDEVLKALEIMTASYGYSWSPKRITLSSVGLRKGLQRFIEESDCHLAVSL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H      R  L+P  + + +  +++  R+Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HTPVPLQRRELMPAEKAFSITEIVELLRNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  +INLI F+  PG     +D + + T  + +   G  + IR  RG DI AACG
Sbjct: 272 KLLRGLDCRINLIRFHAIPGVGLEGADMETMTTLRDYLTSHGLFTTIRASRGEDIFAACG 331

Query: 364 QLKS 367
            L +
Sbjct: 332 MLST 335


>gi|110639497|ref|YP_679706.1| hypothetical protein CHU_3124 [Cytophaga hutchinsonii ATCC 33406]
 gi|123354303|sp|Q11QF0|RLMN_CYTH3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|110282178|gb|ABG60364.1| 23S rRNA m(2)A-2503 methyltransferase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 365

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 201/363 (55%), Gaps = 24/363 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KK+ +  +  EEL++  +  G        R+ Q+++W++ R  R F+ M+++S+E R L
Sbjct: 20  IKKKCIRSLSAEELKDFFVASG----EKAFRSRQVYEWLWKRSARSFEQMTNLSKETRTL 75

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +FSI    I  +++S DGT    ++F  +   G + +E V IP   R T C+SSQVG
Sbjct: 76  LENNFSINPVTISQKQVSTDGT----IKFGFKLHDGYL-VEGVLIPADDRMTACISSQVG 130

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSLTC FC TG     RNL   EI  QV+L +            E    P     ++NIV
Sbjct: 131 CSLTCKFCATGYMDRKRNLEPYEIYDQVVLIKEAAE--------EHYQTP-----LTNIV 177

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MGMGEPL N+ NV K +   +   GL  + +RITLST+G    I ++G+E +   LA+S
Sbjct: 178 LMGMGEPLLNYTNVLKGIDKVTSEEGLHIASKRITLSTAGIAKMITKLGDEKVKFRLALS 237

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++  RN ++PIN    L +L ++  H+   + +  +TFEY++  G+ND+ +DA  L
Sbjct: 238 LHAANDVKRNTIMPINETNNLNVLKESLLHFCKETGSS-VTFEYIVFDGVNDTAQDAKEL 296

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
               K IP KIN+I +NP    +++ +    +  F + +   G    IR  RG DI AAC
Sbjct: 297 YAFAKNIPCKINIIEYNPIQEADFMNTSVDKLEQFKKVLTDKGIIVNIRRSRGKDIDAAC 356

Query: 363 GQL 365
           GQL
Sbjct: 357 GQL 359


>gi|332361790|gb|EGJ39594.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1056]
          Length = 362

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+    ++    Q   + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEM----IEWAEDQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIATLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR  ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|225619727|ref|YP_002720984.1| putative Fe-S-cluster redox enzyme [Brachyspira hyodysenteriae WA1]
 gi|225214546|gb|ACN83280.1| Predicted Fe-S-cluster redox enzyme [Brachyspira hyodysenteriae
           WA1]
          Length = 342

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 210/365 (57%), Gaps = 34/365 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S++ +  +EL +  ++   P+ H     SQI  WIY +    F+ MS+I + +R+LL
Sbjct: 3   KKISIMNVSEDELSKFCVENNFPKFH----ASQILNWIYKKYAVSFEEMSNIPKNLRNLL 58

Query: 65  NQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           ++++ I   +I  E IS D  GT+K L+    +      +IE+V + +K R T C+SSQV
Sbjct: 59  DEYYFIHNSKI--ETISEDEYGTQKLLISLYDK-----KKIESVILNKKDRVTFCLSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC   C+FC TG+  L RNLTA+EIL + LL R                  +V +K+++I
Sbjct: 112 GCGYGCAFCATGSMGLSRNLTADEILAEFLLMR------------------AVTKKVNSI 153

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N  N+ K++   +   G +   R IT+STSG V  I ++ E ++   LA+
Sbjct: 154 VFMGMGEPLANTKNLFKAIDTINSFKGFNLGIRHITISTSGEVAGIKQLIERDLDCRLAV 213

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH++ ND+R+ ++PIN++YP+E L+   + Y   +  R ITFE+V++K +NDS  DA  
Sbjct: 214 SLHSLKNDVRDKIMPINKRYPIENLMAILKRY-SRNGKRMITFEWVLIKDVNDSVNDAYR 272

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT-FSECIKRSGYSSPIRTPRGLDILA 360
           L+ + K  P K+N+IP NP      L    KDI+  F   +K +G     R  +G +ILA
Sbjct: 273 LVNLKKEFPFKVNVIPMNPVEHAPELQRPNKDIILRFKSILKDNGIEVVERFKQGQEILA 332

Query: 361 ACGQL 365
            CGQL
Sbjct: 333 GCGQL 337


>gi|262048118|ref|ZP_06021005.1| hypothetical protein SAD30_1894 [Staphylococcus aureus D30]
 gi|259163684|gb|EEW48239.1| hypothetical protein SAD30_1894 [Staphylococcus aureus D30]
          Length = 364

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 207/371 (55%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
             K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R L
Sbjct: 16  FDKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQL 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F++     V ++ S DGT K+L       +     IETV +      ++CV++QVG
Sbjct: 72  LKDNFTVTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L               +   ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    +E I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +++R+ L+PINR Y +E LI+A ++Y   +N RR+TFEY +  G+ND    A  L
Sbjct: 233 LHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHAREL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL+   +++ 
Sbjct: 352 GQLRVKERQVE 362


>gi|225010483|ref|ZP_03700954.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-3C]
 gi|225005312|gb|EEG43263.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-3C]
          Length = 353

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 133/350 (38%), Positives = 194/350 (55%), Gaps = 22/350 (6%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
           +EAL    + Q     R +Q+++W++ +G   F+ M++IS+E R  L  HF I +  +  
Sbjct: 15  KEALRTFFVTQGQSAFRGNQVYEWLWQKGAHSFESMTNISKETRAFLETHFVINHIRVDQ 74

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
            + S DGT K  +R     +     +E+V IP K+R T CVSSQVGCSL C FC T   K
Sbjct: 75  MQRSNDGTIKNAVRLHDNLV-----VESVLIPTKTRTTACVSSQVGCSLDCKFCATSRLK 129

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
            +RNL  +EI  QV+              I+        R +SNIV MGMGEPL N++NV
Sbjct: 130 RMRNLQPDEIYDQVVA-------------IDQQSRLYFNRPLSNIVFMGMGEPLMNYNNV 176

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILV 255
            K++   +D  GL+ S +RI +STSG VP + R   E GV   LA+SLH+  + +R  ++
Sbjct: 177 LKAIEKITDPEGLAMSPKRIIVSTSG-VPKMIRKMAEDGVKFKLAVSLHSAIDSVRTTIM 235

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
           P N  +PL  L +A + +   + +R IT+EYV+ KGIND+      L++  K  PAK+NL
Sbjct: 236 PFNETFPLAQLREALQFWYEKTKSR-ITYEYVVWKGINDNKAAIDALVEFCKFAPAKVNL 294

Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           I +NP     +  + Q  I  +   ++R   +  +R  RG DI AACGQL
Sbjct: 295 IEYNPIDDGMFSQASQAAIDAYVNTLERHNITCTVRRSRGKDIDAACGQL 344


>gi|296271697|ref|YP_003654328.1| radical SAM enzyme, Cfr family [Arcobacter nitrofigilis DSM 7299]
 gi|296095872|gb|ADG91822.1| radical SAM enzyme, Cfr family [Arcobacter nitrofigilis DSM 7299]
          Length = 355

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 195/346 (56%), Gaps = 30/346 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q++ WIY +    +  M +I  +++  L ++++I   +I+ ++ S DG+ K+L + 
Sbjct: 20  FRAKQVYNWIYKKYANSYDEMKNIPNDLKEDLKENYAIDILKIIKKEKSSDGSIKYLFKL 79

Query: 93  PARCIGGPVEIETVYIPEKSRG-----------TLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                G  VE   + + EK  G           T+C+S+QVGC + C+FC T     VRN
Sbjct: 80  HD---GHTVETVFLLMREKQIGDDGVVEKGEKHTVCISTQVGCKVGCTFCLTAKGGFVRN 136

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           LT  EI+ Q++       +     +I+         K  NIV MGMGEPL N+ N   S+
Sbjct: 137 LTVGEIVAQIV-------NMKRDNNIDE-------NKSLNIVFMGMGEPLDNYKNFVHSV 182

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRK 260
            + S+  GL  ++RR T+STSG    I ++G E +G+ LAISLHAV ++LR+ L+P+N+ 
Sbjct: 183 KVFSEEEGLYINRRRQTVSTSGISSKIEKLGNENLGIQLAISLHAVDDELRSELIPMNKA 242

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y ++ +IDA + +P +   +++ FEY+++K  ND    A  L+ +L GI AK+NLI FNP
Sbjct: 243 YNIKSIIDAVKKFP-VDARKKVMFEYLVIKDKNDDIASAKKLLSLLDGIKAKVNLIYFNP 301

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +PG  Y   + K +V F   +   G    IR  +GLDI AACGQLK
Sbjct: 302 YPGTTYQRPESKKMVEFQNYLISKGLLCTIRESKGLDISAACGQLK 347


>gi|312867068|ref|ZP_07727278.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
           F0405]
 gi|311097197|gb|EFQ55431.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
           F0405]
          Length = 362

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/342 (37%), Positives = 202/342 (59%), Gaps = 26/342 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89
           + R +QIW+W+Y + ++ F+ M+++S+++   LN  F +  +   IV E  S DGT K+L
Sbjct: 24  KFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQRIVQE--SADGTVKYL 81

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
              P   +     IETV + +    ++CV++QVGC++ C+FC +G  K  R+L   EI+ 
Sbjct: 82  FELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLNNGEIVS 136

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q++L +    D  G ++           ++S+IV+MG+GEP  N+DNV K +   +D  G
Sbjct: 137 QIMLVQKYF-DERGQDE-----------RVSHIVVMGIGEPFDNYDNVLKFIRTVNDDKG 184

Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           L+   R IT+STSG    I     E + V LA+SLHA +NDLR+ ++ INR +P+E L  
Sbjct: 185 LAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMKINRAFPIEKLFA 244

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-E 325
           A  +Y   +N RR+TFEY+ML  +ND    AL L ++LK I   + +NLIP+NP     +
Sbjct: 245 AIEYYIETTN-RRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQ 303

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           Y  S ++ ++ F + +K+ G +  +R   G DI AACGQL+S
Sbjct: 304 YSRSPKERVMAFYDTLKKQGVNCVVRQEHGTDIDAACGQLRS 345


>gi|125717485|ref|YP_001034618.1| radical SAM family Fe-S oxidoreductase [Streptococcus sanguinis
           SK36]
 gi|262282762|ref|ZP_06060530.1| cfr family radical SAM enzyme [Streptococcus sp. 2_1_36FAA]
 gi|205829909|sp|A3CLL3|RLMN_STRSV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|125497402|gb|ABN44068.1| Fe-S-cluster redox enzyme/radical SAM enzyme, Cfr family, putative
           [Streptococcus sanguinis SK36]
 gi|262262053|gb|EEY80751.1| cfr family radical SAM enzyme [Streptococcus sp. 2_1_36FAA]
 gi|325697044|gb|EGD38931.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK160]
 gi|327458790|gb|EGF05138.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1057]
 gi|327473422|gb|EGF18842.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK408]
 gi|328945604|gb|EGG39755.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1087]
 gi|332362856|gb|EGJ40649.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK49]
          Length = 362

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+    ++    Q   + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR  ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|332363981|gb|EGJ41760.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK355]
          Length = 362

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+    ++    Q   + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLEQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR  ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|29349780|ref|NP_813283.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253569856|ref|ZP_04847265.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           1_1_6]
 gi|81442826|sp|Q89ZK5|RLMN_BACTN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|29341691|gb|AAO79477.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840237|gb|EES68319.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           1_1_6]
          Length = 345

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 199/364 (54%), Gaps = 29/364 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+  + ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 2   MSKYPLLGMTLIELQSLVKRLGMPG----FAAKQIASWLYDKKVTSIDEMTNLSLKYREL 57

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     V+E  S DGT K+L  +P   +G    +E+VYIP+  R TLC+SSQVG
Sbjct: 58  LKQNYEVGAEAPVEEMRSVDGTVKYL--YP---VGENHFVESVYIPDDERATLCISSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+          P  +            K++N+V
Sbjct: 113 CKMNCKFCMTGKQGYSANLTAHQIINQI-------HSLPERD------------KLTNVV 153

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N + V K+L I + S G ++S +RIT+ST G    + R  EE    LAISL
Sbjct: 154 MMGMGEPLDNLEEVLKALDILTGSYGYAWSPKRITVSTVGLRKGLRRFIEESDCHLAISL 213

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R  L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 214 HSPVTAQRAELMPAEKAFSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 272

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG     +D   +  F + +   G  + IR  RG DI AACG
Sbjct: 273 KLLRGLDCRMNLIRFHSIPGVALEGADMDTMTRFRDYLTTHGLFTTIRASRGEDIFAACG 332

Query: 364 QLKS 367
            L +
Sbjct: 333 MLST 336


>gi|160892219|ref|ZP_02073222.1| hypothetical protein BACUNI_04683 [Bacteroides uniformis ATCC 8492]
 gi|156858697|gb|EDO52128.1| hypothetical protein BACUNI_04683 [Bacteroides uniformis ATCC 8492]
          Length = 350

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 197/366 (53%), Gaps = 29/366 (7%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N ++K  L+G+   EL+  +  +G+P         QI  W+Y + +     MS++S + R
Sbjct: 3   NDMQKRPLLGLTLAELQNVVKNLGMPG----FSAKQIASWLYDKKVASIDEMSNLSLKHR 58

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            LL + + +     VD   S DGT K+L R      G    +E VYIP++ R TLCVSSQ
Sbjct: 59  ELLKEIYEVGAEAPVDAMRSVDGTVKYLYR-----AGEGHFVEAVYIPDEDRATLCVSSQ 113

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC TG Q    NLT+ +I+ Q+          P  +            K++N
Sbjct: 114 VGCKMNCKFCMTGKQGFTANLTSNQIINQI-------SSLPERD------------KLTN 154

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N D V K+L I + S G ++S +R+TLS+ G    + R   E    LAI
Sbjct: 155 VVMMGMGEPLDNLDEVLKALEIMTASYGYAWSPKRVTLSSVGLKKGLQRFIGESDCHLAI 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+     R  L+P  + + +  +++  R+Y   S  RR++FEY++ KG+NDS   A  
Sbjct: 215 SLHSPIPLQRRELMPAEKAFSITEIVELLRNYD-FSKQRRLSFEYIVFKGVNDSLPYAKE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+K+L+G+  +INLI F+  PG     +D + +  F + +   G  + IR+ RG DI AA
Sbjct: 274 LLKLLRGLDCRINLIRFHAIPGVNLEGADMETMTAFRDYLTSHGLFTTIRSSRGEDIFAA 333

Query: 362 CGQLKS 367
           CG L +
Sbjct: 334 CGMLST 339


>gi|294054447|ref|YP_003548105.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM
           45221]
 gi|293613780|gb|ADE53935.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM
           45221]
          Length = 384

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 206/371 (55%), Gaps = 28/371 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SL G   E L EA+   G P      R  Q+ +W+Y + +  +  M+++ +  R  L+
Sbjct: 7   KPSLFGETLESLTEAVKAAGYPG----FRAKQVMEWLYKKRVGTWDAMTNLPKAFRGWLD 62

Query: 66  QHFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI--------PEKSRGTL 116
           + + I+YP + + +K S D T+K+LL    + +     IETV I         EKSR T+
Sbjct: 63  ETY-ILYPTQPLLDKRSDDVTQKFLLELEDKSL-----IETVLIRAPQTGVGQEKSRKTV 116

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           CVS QVGC+  C FC +G     RNL   E++ Q++    +       ED          
Sbjct: 117 CVSIQVGCAYGCKFCASGLAGFRRNLGPAEVVSQLMHICRM-------EDAHTERAKDEI 169

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235
               NIV MGMGEPL N+D + +++ I +   GL+F  RRIT+STSG  P I ++ EE +
Sbjct: 170 ASFDNIVFMGMGEPLANYDTLVRTIKILNAEWGLNFGARRITVSTSGVAPKIKQLAEEGV 229

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
            V LAISLH  +N++RN ++P+N++YPLE LI A + +    + R +T E++M++ INDS
Sbjct: 230 AVRLAISLHGATNEVRNKIMPVNKRYPLEELIPAAKAFKE-RHGRMLTLEFIMIEDINDS 288

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
              A  L KI K + A +N IP+N   G E++    +    F + ++++G S  IR  +G
Sbjct: 289 IDQARELAKIAKDLHAHVNCIPYNKVEGLEWVRPSVRKQDAFVDYLRKAGVSVTIRREKG 348

Query: 356 LDILAACGQLK 366
            DI AACGQL+
Sbjct: 349 HDINAACGQLR 359


>gi|224437065|ref|ZP_03658046.1| hypothetical protein HcinC1_03815 [Helicobacter cinaedi CCUG 18818]
 gi|313143537|ref|ZP_07805730.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128568|gb|EFR46185.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 372

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 135/360 (37%), Positives = 206/360 (57%), Gaps = 30/360 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q++ W+Y R   +   M +IS+ ++  L  HF I     V  + S DG++K+L + 
Sbjct: 26  FRAKQVYHWLYHRYENNIALMDNISKAMQEHLQSHFIISQITPVQIEKSSDGSKKYLFQT 85

Query: 93  PARCIGGPVEI--------ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
                   V I        E+  I +  + T+C+SSQ+GC + C+FC+T     VRNL A
Sbjct: 86  KDGHTFESVLIQMKSKELDESGEIVKGEKWTMCLSSQIGCKVGCAFCFTAKGGFVRNLNA 145

Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
            EI+ QV++ +            +  + P+   K  NIV MGMGEPL N  NV +++ I 
Sbjct: 146 GEIVEQVVMMKR-----------DSNIAPN---KRVNIVYMGMGEPLHNLANVSQAIKIL 191

Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPL 263
           ++  GLS S RR T+STSG  P I  +GE  +GV LAISLHAVS++LR+ L+PIN+ Y +
Sbjct: 192 AELDGLSISARRQTISTSGIAPKIKELGELNLGVQLAISLHAVSDELRSKLMPINKAYNI 251

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
             +++  R +P + + +R+ FEY+M+KG+ND  + A  L+ +L GI AK+NLI FNP  G
Sbjct: 252 AEVLNEVRAFP-VDSRKRVMFEYLMIKGVNDDIKAAKKLLALLNGIKAKVNLILFNPHEG 310

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
            E+     +D+  F++ + + G    IR  +G+DI AACGQL+       K+ R+  +IT
Sbjct: 311 SEFERPLMEDVRAFADFLVKKGLLCTIRESKGIDISAACGQLRE------KIKRENGEIT 364


>gi|217077834|ref|YP_002335552.1| radical SAM enzyme, Cfr family [Thermosipho africanus TCF52B]
 gi|217037689|gb|ACJ76211.1| radical SAM enzyme, Cfr family [Thermosipho africanus TCF52B]
          Length = 341

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 206/365 (56%), Gaps = 34/365 (9%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++++    EEL      +G+     + R  Q++ WIY + + DF+ M+++S+E R +L+
Sbjct: 2   KKNILDFNYEELVNEFKSLGLE----KYRVDQVFDWIYKKKVFDFKDMTNLSKEHRRILD 57

Query: 66  QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++F I  P+++D +IS  D T K+L   P    G    IE+V +  + R T C+S+QVGC
Sbjct: 58  ENFGIQIPKLLDMQISKIDRTTKFLWELPD---GNT--IESVALFHEGRVTACISTQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI--SNI 182
            + CSFC TG    VRNLTA EI+ Q+L          G E         V RKI   N+
Sbjct: 113 PVKCSFCATGQSGYVRNLTAGEIVSQIL----------GIE---------VHRKIRVGNV 153

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V MGMGEPL N++N  KS+ + ++        RRIT+ST G    I  + E  + V LA+
Sbjct: 154 VYMGMGEPLLNYENTIKSVKMLNNKKMFGIGIRRITISTVGVPEKIIDLAESGLDVKLAL 213

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +N  R+ ++P+N++Y +E LI A + Y  ++N  R+T EY+++K  ND P DA  
Sbjct: 214 SLHATTNFKRDQIIPLNKQYSIEELIFAVKKYQEITN-NRVTIEYILIKEFNDYPEDAEK 272

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG+   +NLIP NP     Y    +  +  F E + + G    IR  +G DI AA
Sbjct: 273 LAELLKGLSVYVNLIPVNP-VNPNYYRPSRWAMERFKEILTKYGIECEIRAEKGTDIDAA 331

Query: 362 CGQLK 366
           CGQL+
Sbjct: 332 CGQLR 336


>gi|325690223|gb|EGD32227.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK115]
          Length = 362

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+    ++    Q   + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIATLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR  ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDILKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|167760434|ref|ZP_02432561.1| hypothetical protein CLOSCI_02808 [Clostridium scindens ATCC 35704]
 gi|167661933|gb|EDS06063.1| hypothetical protein CLOSCI_02808 [Clostridium scindens ATCC 35704]
          Length = 357

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 204/366 (55%), Gaps = 29/366 (7%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            + K+ +     EEL+E + +IG        R++QI++W++V+    F  M+++S+E+R 
Sbjct: 1   MMSKKDICSYSFEELKEEIARIGEKD----FRSTQIYEWLHVKLAESFDEMTNLSKELRE 56

Query: 63  LLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            L + + I   +++D +IS  D T K+L      C G    IE+V +      ++C+SSQ
Sbjct: 57  KLKEEYEIAKVKMIDHQISKVDPTEKFLFEL---CDGNM--IESVLMKYNYGNSVCISSQ 111

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC +    L R+L   E+L Q+   + + G+                 ++SN
Sbjct: 112 AGCRMGCRFCASTIGGLERSLAPSEMLRQIYQIQKMTGE-----------------RVSN 154

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           +V+MG GEPL N+DN  K + I SD  GL  S+R IT ST G VPN+ R+ +E + + LA
Sbjct: 155 VVVMGTGEPLDNYDNFVKFIHILSDEHGLHISQRNITASTCGIVPNMKRLADEGLQITLA 214

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLH  + + R  L+P+  +Y L  ++DAC +Y      RRITFEY +++G+ND   DA 
Sbjct: 215 LSLHGSTQEKRKRLMPVADRYELPEVLDACDYYFE-KTGRRITFEYSLVEGVNDQMEDAR 273

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI IL+     +NLIP NP    ++   D+K+ + F   ++++G +  IR  RG DI  
Sbjct: 274 ELISILRKRNCHLNLIPVNPIKERDFKKPDRKNALEFKNKLEKNGINVTIRRERGSDIDG 333

Query: 361 ACGQLK 366
           ACGQL+
Sbjct: 334 ACGQLR 339


>gi|329956949|ref|ZP_08297517.1| 23S rRNA m2A2503 methyltransferase [Bacteroides clarus YIT 12056]
 gi|328523706|gb|EGF50798.1| 23S rRNA m2A2503 methyltransferase [Bacteroides clarus YIT 12056]
          Length = 345

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 194/362 (53%), Gaps = 29/362 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+G+   EL+  +  +G+P         QI  W+Y +       M+++S + R LL 
Sbjct: 2   KQPLLGLTLTELQAVVKNLGMPG----FAAKQIASWLYDKKAASIDEMTNLSLKHRELLK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + + +     VD   S DGT K+L R      G    +E VYIP++ R TLCVSSQVGC 
Sbjct: 58  EIYEVGGEAPVDAMRSADGTVKYLYR-----AGEGHYVEAVYIPDEDRATLCVSSQVGCK 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLTA +I+ Q+          P  +            K++N+VMM
Sbjct: 113 MNCKFCMTGKQGFTANLTANQIINQI-------NSLPERD------------KLTNVVMM 153

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V K+L + + S G  +S +RITLS+ G    + R  EE    LAISLH+
Sbjct: 154 GMGEPLDNLDEVLKALEVMTSSYGYGWSPKRITLSSVGLRKGLQRFIEESDCHLAISLHS 213

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  +++  R+Y   S  RR++FEY++ KG+NDS   A  L+K+
Sbjct: 214 PVPLQRRELMPAEKAFSIAEIVELLRNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  ++NLI F+  PG +   +D + + T  + +   G  + IR  RG DI AACG L
Sbjct: 273 LRGLDCRVNLIRFHAIPGVDLEGADMETMTTLRDYLTSHGLFTTIRASRGEDIFAACGML 332

Query: 366 KS 367
            +
Sbjct: 333 ST 334


>gi|306827020|ref|ZP_07460318.1| cfr family radical SAM enzyme [Streptococcus pyogenes ATCC 10782]
 gi|304430766|gb|EFM33777.1| cfr family radical SAM enzyme [Streptococcus pyogenes ATCC 10782]
          Length = 359

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/384 (34%), Positives = 216/384 (56%), Gaps = 33/384 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G  Q     R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 2   KPSIYSLTRDELIAWAVERGQKQ----FRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   +V E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DSFCVNPLKQRVVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L + EI  Q++L +    D               G ++S++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L + +D  GL+   R IT+STSG    I     E +   LA+S
Sbjct: 159 VMGIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQANLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ +NR +PLE L  A  +Y   +N RR+TFEY+ML  +NDS + A  L
Sbjct: 219 LHAPNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTN-RRVTFEYIMLNEVNDSIKQAQEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
           AACGQL+S   +  K  R+++ +T
Sbjct: 338 AACGQLRS---KTMKKDREKVTVT 358


>gi|222099877|ref|YP_002534445.1| Radical SAM enzyme, Cfr family [Thermotoga neapolitana DSM 4359]
 gi|254807220|sp|B9K7Z6|RLMN_THENN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|221572267|gb|ACM23079.1| Radical SAM enzyme, Cfr family [Thermotoga neapolitana DSM 4359]
          Length = 343

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 208/362 (57%), Gaps = 30/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+ +  +EL   +  +G+     R R  QI  W++ + + +F  M+++S++ R LL +
Sbjct: 2   KNLLDLSYDELVSEITSLGLE----RYRADQILDWVFDKKVNNFDEMTNLSKQHRALLKE 57

Query: 67  HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           HF+I + +++++++S  DGT K+L             IE+V I    R T C+S+QVGC 
Sbjct: 58  HFTIPFLKLLEKRVSKIDGTTKFLWELEDGNT-----IESVMIFHPGRITACISTQVGCP 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TG    VRNLT  EI+ Q+L            E  E       G+KI N+V M
Sbjct: 113 VGCTFCATGMSGFVRNLTTGEIVSQIL----------SMEKEE-------GKKIGNVVYM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N++N  KS+ I +     +   RRIT+ST G    I ++ +E + V LA+SLH
Sbjct: 156 GMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPEKIIQLADEGLDVKLALSLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N  R+ LVP+NRKY +E +++A + Y  +   +R+T EYV+++G+ND   DA  L +
Sbjct: 216 APTNFKRDQLVPLNRKYSVEEILNAIKVYQ-MKTGKRVTIEYVLIRGVNDEISDAKKLAE 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ILKG+   +NLIP NP        S Q+ I+ F   +  +G  + IR  +G DI AACGQ
Sbjct: 275 ILKGLKVFVNLIPVNPTVAGLSKPSRQR-ILAFKRILLENGIEAEIRQEKGSDIEAACGQ 333

Query: 365 LK 366
           L+
Sbjct: 334 LR 335


>gi|163753003|ref|ZP_02160127.1| hypothetical protein KAOT1_12622 [Kordia algicida OT-1]
 gi|161326735|gb|EDP98060.1| hypothetical protein KAOT1_12622 [Kordia algicida OT-1]
          Length = 347

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 24/361 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +  + +E+L +  +  G        R +Q+++W++ +G   F  M++IS+E R +L 
Sbjct: 6   KKDIRALSKEQLRDFFVSEGDKA----FRGNQVYEWLWQKGAHSFDDMTNISKETRKMLE 61

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F I +  +   + S DGT K  +R     +     +E+V IP  +R T CVSSQVGCS
Sbjct: 62  ENFVINHIRVDKMQRSNDGTIKNAVRLHDGLV-----VESVLIPTSTRTTACVSSQVGCS 116

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T   K +RNL  +EI  QV+             D E  +    GR +SNIV M
Sbjct: 117 LDCKFCATARLKRMRNLNPDEIYDQVVAI-----------DRESRLYH--GRPLSNIVFM 163

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           GMGEPL N++NV K++   +   GL  S +RIT+STSG    I ++ + E+   LA+SLH
Sbjct: 164 GMGEPLMNYNNVLKAIEKITSEEGLGMSPKRITVSTSGVPKMIKKMADDEVKFKLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  +++R  ++P N  +PL+ L +A  ++   +   +IT+EYV+  GIND  +D   L+K
Sbjct: 224 SAIDEVRTEIMPFNEHFPLKDLKEALTYWYDKT-KNKITYEYVVWDGINDQQKDINALVK 282

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             K +P+K+NLI +NP    ++  +  K I  + + ++++G +  +R  RG DI AACGQ
Sbjct: 283 FCKDVPSKVNLIEYNPIDDGQFQQASNKAIDRYVDSLEQNGITVTVRRSRGKDIDAACGQ 342

Query: 365 L 365
           L
Sbjct: 343 L 343


>gi|160903334|ref|YP_001568915.1| radical SAM protein [Petrotoga mobilis SJ95]
 gi|205829799|sp|A9BIC0|RLMN_PETMO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|160360978|gb|ABX32592.1| radical SAM enzyme, Cfr family [Petrotoga mobilis SJ95]
          Length = 347

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 128/338 (37%), Positives = 192/338 (56%), Gaps = 26/338 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLL 90
           + RT QI  WIY + + DF+ M+++S++ R  L+ +F I  P IV +++S  DGT K+LL
Sbjct: 26  KFRTDQICDWIYKKRVFDFESMTNLSKDDRQKLSDNFKISIPHIVKKEVSKIDGTTKYLL 85

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
               +     VE   +Y P  SR   C+S+QVGC L CSFC TG    VRNL+  EI+ Q
Sbjct: 86  ELEDK---NTVEAVIIYYP--SRTIACISTQVGCPLKCSFCSTGQSGYVRNLSTGEIIGQ 140

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           +L            E  + M        + N+V MGMGEPL NF+NV +++ I +     
Sbjct: 141 LL----------AMEKDKEM-------DVKNVVYMGMGEPLLNFNNVVQTIEILNHPKMK 183

Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
               R IT+ST+G    I  VG+      L++SLHA +N  R+ ++PIN KYP+E +I +
Sbjct: 184 KLGARHITISTAGIPQKIEEVGDLNKEFRLSVSLHAPTNLQRDQIMPINHKYPVEQVIQS 243

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           CR Y      +R+TFEY+++KG NDS  DAL L+++   +   +NLIP N  P   +   
Sbjct: 244 CRIYQK-KTKKRVTFEYILIKGFNDSKEDALKLVELFGDLKVMVNLIPVNENPAG-FEKP 301

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            ++ I  F + + ++G  + +R  +G DI AACGQL++
Sbjct: 302 SKRFIQAFLDTLVKNGIDAVVRAEKGSDISAACGQLRT 339


>gi|309389025|gb|ADO76905.1| 23S rRNA m(2)A-2503 methyltransferase [Halanaerobium praevalens DSM
           2228]
          Length = 347

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 140/364 (38%), Positives = 205/364 (56%), Gaps = 28/364 (7%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           + R EL E L K G P      R  Q++ W+Y  GI   + M +I +++R  L+ ++++ 
Sbjct: 7   LTRNELIEDLKKAGFPA----YRGEQVFNWLYKNGISKTEEMKNIPKKMRSYLDNNYNLN 62

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVGCSLTCS 129
             +     ++ DGT K+L +     +     IE VY+P  E  R + C+S+QVGC L CS
Sbjct: 63  NLKESKRSVAVDGTVKYLWQ-----LNDGENIEGVYLPFPESGRHSACISTQVGCGLGCS 117

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG   L RNLT  EI+ QVL    +  D  G    E         ++SN+V MGMGE
Sbjct: 118 FCATGIDGLKRNLTTGEIVEQVL---EIQKDISGSNFAE--------PRLSNLVFMGMGE 166

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGVMLAISLHAV 246
           PL NFDN+ +++ I + + GL+   R++T+ST+G VP I   A+V ++IG  LAISLHA 
Sbjct: 167 PLANFDNLMQAVEILNSNQGLNIGMRKMTISTAGLVPEIKKLAKVNDQIG--LAISLHAP 224

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LRN ++PIN+KY +  L+     Y      RR+TFEYV++  +NDSP  ++ L ++L
Sbjct: 225 NDRLRNKIMPINKKYNINQLLKTVIDYIE-KTGRRVTFEYVLMDSVNDSPELSVQLSELL 283

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +GI   +NLIP NP P        QK I +F + +  +G    +R   G  I AACGQLK
Sbjct: 284 RGINCHVNLIPANPVPELGIERPVQKVIDSFYDTLVNNGIQVSLRKEMGSQIEAACGQLK 343

Query: 367 SLSK 370
              K
Sbjct: 344 RKEK 347


>gi|19746482|ref|NP_607618.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS8232]
 gi|81632611|sp|Q8P058|RLMN_STRP8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|19748687|gb|AAL98117.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
          Length = 359

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 209/368 (56%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G  Q     R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 2   KPSIYSLTRDELIAWAVERGQKQ----FRATQIWDWLYKKRVQSFEEMTNISKDFVPILN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   +V E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DSFCVNPLKQRVVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L + EI  Q++L +    D               G ++S++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L + +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ +NR +PLE L  A  +Y   +N RR+TFEY+ML  +NDS + A  L
Sbjct: 219 LHAPNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTN-RRVTFEYIMLNEVNDSIKQAQEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|94988886|ref|YP_596987.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS9429]
 gi|94992778|ref|YP_600877.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS2096]
 gi|122986917|sp|Q1JAS5|RLMN_STRPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123382514|sp|Q1JKX6|RLMN_STRPC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|94542394|gb|ABF32443.1| radical SAM family enzyme [Streptococcus pyogenes MGAS9429]
 gi|94546286|gb|ABF36333.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS2096]
          Length = 359

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 209/368 (56%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G  Q     R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 2   KPSIYSLTRDELIAWAVERGQKQ----FRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   +V E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DSFCVNPLKQRVVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L + EI  Q++L +    D               G ++S++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L + +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ +NR +PLE L  A  +Y   +N RR+TFEY+ML  +NDS + A  L
Sbjct: 219 LHAPNNDLRSRIMRVNRSFPLEKLFSAIEYYIEKTN-RRVTFEYIMLNEVNDSIKQAQEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKTIRKLSYVNLIPYNPVSEHDQYSRSLKERVLAFYDVLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|325568408|ref|ZP_08144775.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC
           12755]
 gi|325158177|gb|EGC70330.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC
           12755]
          Length = 361

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 127/346 (36%), Positives = 202/346 (58%), Gaps = 26/346 (7%)

Query: 28  QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGT 85
           Q   + R +Q+W+W+Y + +  F+ M+++ + +   L+  F I  +   +V E  + DGT
Sbjct: 26  QNEKKFRANQVWEWLYEKRVTSFEEMTNLPKPLIEKLSAAFVINPLKQMVVQE--ASDGT 83

Query: 86  RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145
            K+L + P   +     IETV + ++   ++CV++QVGC++ C+FC +G  K  R+LTA 
Sbjct: 84  VKYLFQLPDNHM-----IETVLMRQEYGMSVCVTTQVGCNIGCTFCASGLLKKQRDLTAG 138

Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           EI+ Q++L +    +             + G ++S++V+MG+GEP  N+DNV   L I +
Sbjct: 139 EIVAQIMLVQHYFDE------------RNEGERVSHVVVMGIGEPFDNYDNVMHFLQIIN 186

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264
           D  GL+   R IT+STSG    I    E  + V LAISLHA +N++R  ++ INR +P+E
Sbjct: 187 DPKGLAIGARHITVSTSGLAHKIKEFAENGLQVNLAISLHAPNNEVRTSMMRINRSFPIE 246

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWP 322
            L+ A  +Y   +N RRITFEY+ML  +ND P  A  L  +LK     + +NLIP+NP  
Sbjct: 247 KLMAAVDYYLEKTN-RRITFEYIMLDHVNDRPEHARQLAALLKDKKKLSYVNLIPYNPVS 305

Query: 323 GC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
              +Y  S + D++ F + +K++G +  IR   G DI AACGQL+S
Sbjct: 306 EHDQYARSKKADVLAFYDILKKNGINCVIRKEHGTDIDAACGQLRS 351


>gi|78778287|ref|YP_394602.1| hypothetical protein Suden_2093 [Sulfurimonas denitrificans DSM
           1251]
 gi|123727504|sp|Q30NR4|RLMN_SULDN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78498827|gb|ABB45367.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 356

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 128/352 (36%), Positives = 200/352 (56%), Gaps = 34/352 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI+ W+Y    + F  M +I Q+++  L + + +   +IV +++S DGT K+L   
Sbjct: 21  FRAKQIYGWLYHNYAQSFDDMKNIPQQLKDELAKSYVVNLLKIVKKELSNDGTIKYLFEL 80

Query: 93  PARCIGGPVEIETVY-------------IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
                 G   IETV+             + ++++ T+CVS+QVGC + C+FC T      
Sbjct: 81  Q----DGKT-IETVWLKMKDEQIDEEGCVTQEAKYTICVSTQVGCKVGCAFCLTAKGGFT 135

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           R+LTA EI+ QV+   +L  D     +           ++ NIV MGMGEPL N DN+ +
Sbjct: 136 RDLTAGEIVAQVV---ALKKDNDHKHN-----------RMINIVYMGMGEPLDNLDNLSR 181

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258
           ++ I  +  GL  S +R T+STSG    I R+GE ++GV +AISLHAV ++LR  L+P+N
Sbjct: 182 AIEIFKEEDGLCISGKRQTVSTSGLSNKIDRLGEMDLGVHIAISLHAVDDELRTELIPMN 241

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + + +  +I+A + +P +   +R+ FEY+++K  ND    A  L+K+L GI AK+NLI F
Sbjct: 242 KAHNISSIIEAVKRFP-IDTRKRVMFEYLVIKNKNDDLGSAKKLVKLLSGIKAKVNLIYF 300

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           NP+P   Y    + D++ F E +   G    IR  +G+DI AACGQLK  ++
Sbjct: 301 NPYPDTPYERPQKSDMIAFQEYLINHGLLCTIRDSKGIDISAACGQLKEKTQ 352


>gi|325694144|gb|EGD36062.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK150]
          Length = 362

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+    ++    Q   + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR  ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|223934018|ref|ZP_03625972.1| radical SAM enzyme, Cfr family [Streptococcus suis 89/1591]
 gi|302024309|ref|ZP_07249520.1| ribosomal RNA large subunit methyltransferase N [Streptococcus suis
           05HAS68]
 gi|330833298|ref|YP_004402123.1| radical SAM enzyme, Cfr family [Streptococcus suis ST3]
 gi|223897307|gb|EEF63714.1| radical SAM enzyme, Cfr family [Streptococcus suis 89/1591]
 gi|329307521|gb|AEB81937.1| radical SAM enzyme, Cfr family [Streptococcus suis ST3]
          Length = 370

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 201/342 (58%), Gaps = 26/342 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89
           + R +QIW+W+Y   ++ F  M+++ + +   L +HF +  +   IV E  S DGT K+L
Sbjct: 24  KFRATQIWEWLYRSRVQSFAEMTNLPKSLIEKLEEHFVVNPLKQRIVQE--SKDGTIKYL 81

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
              P   +     IETV + +    ++CV++QVGC++ C+FC +G     R+LT+ EI+ 
Sbjct: 82  FELPDGML-----IETVLMHQHYGLSVCVTTQVGCNIGCTFCASGLIPKQRDLTSGEIVA 136

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q++L +  L +    E            ++S+IV+MG+GEPL N+DNV   L + +D  G
Sbjct: 137 QIMLVQKYLDERNQNE------------RVSHIVVMGIGEPLDNYDNVMTFLRVVNDDKG 184

Query: 210 LSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           L+   R IT+STSG  P I     E + V LA+SLHA +NDLR+ ++ INRK+P+E+L +
Sbjct: 185 LAIGARHITVSTSGLAPKIREFACEGVQVNLAVSLHAPNNDLRSSIMRINRKFPIEVLFE 244

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-E 325
           A   Y  ++N RR+TFEY+ML  +ND    A  L  + K I   + INLIP+NP     +
Sbjct: 245 AIEDYIKVTN-RRVTFEYIMLNEVNDGVEQAQELADLTKNIRKLSYINLIPYNPVSEHDQ 303

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           Y  S ++  + F + +K++G +  +R   G DI AACGQL+S
Sbjct: 304 YSRSTKERTLAFFDVLKKNGVNCVVRQEHGTDIDAACGQLRS 345


>gi|153953998|ref|YP_001394763.1| ribosomal RNA large subunit methyltransferase N [Clostridium
           kluyveri DSM 555]
 gi|146346879|gb|EDK33415.1| Hypothetical protein CKL_1373 [Clostridium kluyveri DSM 555]
          Length = 359

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 128/337 (37%), Positives = 193/337 (57%), Gaps = 25/337 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLL 90
           + R SQI  WIY +   DF  M++IS+ V   L ++F I  PE+++ +K     T K+L 
Sbjct: 23  KFRASQIMDWIYKKNQYDFNYMTNISKNVIEKLKKNFYIGIPELIEKQKSKSQDTFKFLY 82

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
           +F  + I     IETV +  +   ++CVS+QVGC + C FC +    +VRNLT+ EIL Q
Sbjct: 83  KFQDKNI-----IETVVMKYRHGNSICVSTQVGCRMGCKFCASTVNGMVRNLTSGEILAQ 137

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           +L +++                  +  +ISNIV+MG GEPL N+DNV K L++ +    L
Sbjct: 138 ILKSQT-----------------EINERISNIVLMGSGEPLDNYDNVLKFLNMVNSKYSL 180

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           +  +R ITLST G VP I  +  E + + LAISLH+  N  R  ++PI  KY +E +I A
Sbjct: 181 NIGQRHITLSTCGIVPKIMDLANENLQITLAISLHSPDNFSRRDMMPIANKYSIEEIIYA 240

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           C++Y   +  RR++FEY ++KG+NDS   A  L+++LKG+   +NLIP N     ++  S
Sbjct: 241 CKYYINKT-GRRVSFEYALVKGVNDSLEFAERLVQLLKGLLCHVNLIPVNEVKENDFKKS 299

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            + +I  F   +  +   + IR   G DI AACGQL+
Sbjct: 300 SEDNIKKFYNKLIENKIETTIRREMGSDIDAACGQLR 336


>gi|301166181|emb|CBW25756.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 352

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 209/368 (56%), Gaps = 29/368 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S   +  +EL  +L + G+      +    ++ W Y +  +      +IS+  +  L+
Sbjct: 10  KRSFYNLNYDELVTSLQEEGLGTSAASL----LYNWHYKKK-QSSPCTHNISKATQKFLS 64

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F    PEI +  IS D T K+L +     +    ++E+V IP  ++ ++C+SSQVGC+
Sbjct: 65  DNFDFSLPEIDEVHISDDRTVKFLFK-----LHDSSKVESVLIPFHNKYSICLSSQVGCA 119

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           + CSFC+TGTQ L RNL   EIL Q L A R L  + PG E            +I NIV 
Sbjct: 120 MKCSFCFTGTQGLKRNLETSEILGQFLAAWRWLAENRPGEE------------RILNIVF 167

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MG GEPL NFD VK++  I     G S   ++IT+STSG++P + R  EEI GV LA+SL
Sbjct: 168 MGQGEPLHNFDAVKRACEIFLSKNGASIGTQKITISTSGYLPGLKRWEEEIPGVNLALSL 227

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301
           H+   + RN L+P+N+KY L  ++   +H   ++  ++  IT+EY+++K  NDS  DA  
Sbjct: 228 HSPFEEKRNELIPVNKKYSLPEVL---KHIDSITLQKKQFITYEYLLIKDFNDSVEDARA 284

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + ++LKG  A IN+IPFNP+PG +Y      ++++F   I      + +R  +G D+LAA
Sbjct: 285 VGELLKGKEAYINIIPFNPFPGSKYKRPSDNEVLSFKSIIDEYKIPTLVRITKGDDVLAA 344

Query: 362 CGQLKSLS 369
           CGQL + S
Sbjct: 345 CGQLNTKS 352


>gi|281490670|ref|YP_003352650.1| radical SAM family enzyme [Lactococcus lactis subsp. lactis KF147]
 gi|281374439|gb|ADA63960.1| Radical SAM family enzyme [Lactococcus lactis subsp. lactis KF147]
          Length = 365

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 215/372 (57%), Gaps = 29/372 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S+ G+ R++L E  ++ G      + R +Q+W W+Y + ++ F+ MS++S      LN+H
Sbjct: 12  SIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAAFIDKLNEH 67

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +   E V  + S DGT K+L   P + +     IETV + +    ++CV++QVGC++ 
Sbjct: 68  FILNPLEQVVVQESADGTVKYLFMLPDKMM-----IETVLMRQSYGLSVCVTTQVGCNMG 122

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +G  K  R++TA EI+ Q++L +          D  G+       ++S++V+MG+
Sbjct: 123 CTFCASGILKKERDVTAGEIVSQIMLVQKYF-------DERGL-----DERVSHVVVMGI 170

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHA 245
           GEP  N++++   L + +D  GL+   R IT+ST GF+P   +    E + + LAISLHA
Sbjct: 171 GEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISLHA 230

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+LR  L+ I R  PLE L +A  +Y   +N RR+T+EY+ML G NDSP  A  L  +
Sbjct: 231 PNNELRTSLMRITRNAPLEKLFEAIDYYTETTN-RRVTYEYIMLSGENDSPEIAQQLADL 289

Query: 306 LK--GIPAKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K     + +NLIP+NP     +Y  S + +   F + +K++G +  +R   G DI AAC
Sbjct: 290 IKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDAAC 349

Query: 363 GQLKSLSKRIPK 374
           GQL+  SK+I K
Sbjct: 350 GQLR--SKQIKK 359


>gi|327402251|ref|YP_004343089.1| 23S rRNA m(2)A-2503 methyltransferase [Fluviicola taffensis DSM
           16823]
 gi|327317759|gb|AEA42251.1| 23S rRNA m(2)A-2503 methyltransferase [Fluviicola taffensis DSM
           16823]
          Length = 359

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 203/362 (56%), Gaps = 24/362 (6%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL+ A++  G P      R  Q+++WI+ + + DF  M++I + ++  L ++F      
Sbjct: 14  EELKAAIVGFGEPA----FRAKQVYEWIWKKNVHDFNAMANIGKSLQEKLQENFYFDGIT 69

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
           I D++IS D T K          G    +E V IP  +R T C+SSQVGCSL+C+FC TG
Sbjct: 70  IEDQQISVDKTIKCAFGIE----GQSQVVEGVLIPTTNRMTACISSQVGCSLSCAFCATG 125

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
             K++RNL+A EI+ QV+  ++L                     +SNIV MGMGEPL N+
Sbjct: 126 RLKMMRNLSAGEIVDQVVYLKNL-------------ATGKYNTNLSNIVYMGMGEPLLNY 172

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNI 253
            NV +S+ I +D  GL  S +RIT+ST+G    I ++G +++   LA+SLHA ++  R+ 
Sbjct: 173 KNVVRSVDILTDENGLGMSPKRITVSTAGIAKMIRKLGDDDVKFNLALSLHAANDVKRSK 232

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           ++ IN    L+ L +A  ++   + + R+TFEY++ K  ND   DA  L    K +P KI
Sbjct: 233 IMDINDTNNLDELSEALLYFHEKTGS-RVTFEYIIFKDFNDGLEDARELADFAKVVPCKI 291

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECI-KRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
           N+I +NP    EY  +D++ +  F+  + ++      +R  RG DI AACGQL + +K I
Sbjct: 292 NIIEYNPIDDGEYQQADRQKVDDFARFLEEKCNLIVNVRRSRGKDIDAACGQLANKNKMI 351

Query: 373 PK 374
            K
Sbjct: 352 DK 353


>gi|219854612|ref|YP_002471734.1| hypothetical protein CKR_1269 [Clostridium kluyveri NBRC 12016]
 gi|219568336|dbj|BAH06320.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 362

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 128/337 (37%), Positives = 193/337 (57%), Gaps = 25/337 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLL 90
           + R SQI  WIY +   DF  M++IS+ V   L ++F I  PE+++ +K     T K+L 
Sbjct: 26  KFRASQIMDWIYKKNQYDFNYMTNISKNVIEKLKKNFYIGIPELIEKQKSKSQDTFKFLY 85

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
           +F  + I     IETV +  +   ++CVS+QVGC + C FC +    +VRNLT+ EIL Q
Sbjct: 86  KFQDKNI-----IETVVMKYRHGNSICVSTQVGCRMGCKFCASTVNGMVRNLTSGEILAQ 140

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           +L +++                  +  +ISNIV+MG GEPL N+DNV K L++ +    L
Sbjct: 141 ILKSQT-----------------EINERISNIVLMGSGEPLDNYDNVLKFLNMVNSKYSL 183

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           +  +R ITLST G VP I  +  E + + LAISLH+  N  R  ++PI  KY +E +I A
Sbjct: 184 NIGQRHITLSTCGIVPKIMDLANENLQITLAISLHSPDNFSRRDMMPIANKYSIEEIIYA 243

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           C++Y   +  RR++FEY ++KG+NDS   A  L+++LKG+   +NLIP N     ++  S
Sbjct: 244 CKYYINKT-GRRVSFEYALVKGVNDSLEFAERLVQLLKGLLCHVNLIPVNEVKENDFKKS 302

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            + +I  F   +  +   + IR   G DI AACGQL+
Sbjct: 303 SEDNIKKFYNKLIENKIETTIRREMGSDIDAACGQLR 339


>gi|257469926|ref|ZP_05634018.1| florfenicol resistance protein [Fusobacterium ulcerans ATCC 49185]
 gi|317064156|ref|ZP_07928641.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313689832|gb|EFS26667.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 350

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 207/367 (56%), Gaps = 28/367 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + ++ELEE ++ +G+ + + +    QI+ W++ + +RD   ++++S + R LL
Sbjct: 3   EKINLLNLNQQELEELVISLGMKKFYGK----QIFNWLHQKIVRDLNEITNLSLKDRELL 58

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQV 122
           ++   I +  ++ +++S  D T K+L +      G    IETV +  K  R TLC+SSQV
Sbjct: 59  SEKAYIPFLNLLKQQVSKIDKTEKFLFKLED---GNT--IETVLLRHKDKRNTLCISSQV 113

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C+FC TG    VRNL   EI+ QV      L                 G  I+NI
Sbjct: 114 GCPVKCAFCATGQDGFVRNLDVNEIINQVYTVERRL--------------TKQGSNINNI 159

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241
           V MGMGEPL N  NV K+L I S+  G++ SKR+IT+STSG VPNI ++  E++ + LAI
Sbjct: 160 VFMGMGEPLLNLSNVLKALDILSNENGINISKRKITISTSGIVPNIEKILLEKLPIELAI 219

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+  N  R++++P+NR YPLE L    + Y   +  RRI+FEY+M+   N S  DA  
Sbjct: 220 SLHSAINAKRDMIIPVNRSYPLEDLYAILQEYQRQT-KRRISFEYIMINDFNVSDIDANA 278

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILA 360
           L   +      +NLIP+NP  G E+    +K I  F   +K     +  +R  +G DI  
Sbjct: 279 LADFVHEFDHVVNLIPYNPVAGTEFERPSEKKIEKFFTFLKDVRKVNVTLRREKGTDIDG 338

Query: 361 ACGQLKS 367
           ACGQL+ 
Sbjct: 339 ACGQLRQ 345


>gi|291534141|emb|CBL07254.1| 23S rRNA m(2)A-2503 methyltransferase [Megamonas hypermegale
           ART12/1]
          Length = 345

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 201/362 (55%), Gaps = 26/362 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++ G+   EL   +  + +P    + R  QI +W+Y +    F  M+++S+++R  L Q 
Sbjct: 3   NIFGLNLTELTSLITDLNLP----KFRAKQIIEWLYQKHATSFDEMTNLSKDLREKLAQE 58

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F+I   +  D   S DG T K+LL F     G  + +ETV + +    ++CVSSQ GC++
Sbjct: 59  FTIERAKSCDRLDSSDGKTTKFLLEF-----GDGIGVETVLMRQPYGNSICVSSQAGCNM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +    + RNL+  EIL Q +  + LL                 G +I+NIV+MG
Sbjct: 114 GCSFCASTLHGMARNLSTGEILAQAMFIQELLN--------------QTGEQINNIVIMG 159

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP+ N+DNV   + +  +   L+   R IT+STSG VP I ++ +E + + L+ISLHA
Sbjct: 160 SGEPMLNYDNVLNFIRLVHEPYCLNLGYRNITISTSGIVPGINKLAQENLPITLSISLHA 219

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N LR  L+PIN++YP+E +I A  +Y   +  RRIT+EY+++   ND+  +A+ L K+
Sbjct: 220 PNNVLRTELMPINKRYPIEEVIKAAVNYAN-TTKRRITYEYILIDKYNDNMTEAVELCKL 278

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LK   A +NLIP NP     Y       I  F++ +     ++ IR   G DI AACGQL
Sbjct: 279 LKNQLANVNLIPINPVKERNYNRPSLARIKAFAKYLNDHHLTATIRQEMGTDIQAACGQL 338

Query: 366 KS 367
           ++
Sbjct: 339 RN 340


>gi|257867066|ref|ZP_05646719.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           casseliflavus EC30]
 gi|257873401|ref|ZP_05653054.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           casseliflavus EC10]
 gi|257877144|ref|ZP_05656797.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           casseliflavus EC20]
 gi|257801122|gb|EEV30052.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           casseliflavus EC30]
 gi|257807565|gb|EEV36387.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           casseliflavus EC10]
 gi|257811310|gb|EEV40130.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           casseliflavus EC20]
          Length = 361

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 127/346 (36%), Positives = 202/346 (58%), Gaps = 26/346 (7%)

Query: 28  QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGT 85
           Q   + R +Q+W+W+Y + +  F+ M+++ + +   L+  F I  +   +V E  + DGT
Sbjct: 26  QNEKKFRANQVWEWLYEKRVTSFEEMTNLPKPLIEKLSAAFVINPLKQMVVQE--ASDGT 83

Query: 86  RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145
            K+L + P   +     IETV + ++   ++CV++QVGC++ C+FC +G  K  R+LTA 
Sbjct: 84  VKYLFQLPDNHM-----IETVLMRQEYGMSVCVTTQVGCNIGCTFCASGLLKKQRDLTAG 138

Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           EI+ Q++L +    +             + G ++S++V+MG+GEP  N+DNV   L I +
Sbjct: 139 EIVAQIMLVQHYFDE------------RNEGERVSHVVVMGIGEPFDNYDNVMHFLQIIN 186

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264
           D  GL+   R IT+STSG    I    E  + V LAISLHA +N++R  ++ INR +P+E
Sbjct: 187 DPKGLAIGARHITVSTSGLAHKIREFAENGLQVNLAISLHAPNNEVRTSMMRINRSFPIE 246

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWP 322
            L+ A  +Y   +N RRITFEY+ML  +ND P  A  L  +LK     + +NLIP+NP  
Sbjct: 247 KLMAAVDYYLEKTN-RRITFEYIMLDHVNDRPEHARQLAALLKDKKKLSYVNLIPYNPVS 305

Query: 323 GC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
              +Y  S + D++ F + +K++G +  IR   G DI AACGQL+S
Sbjct: 306 EHDQYARSKKADVLAFYDILKKNGINCVIRKEHGTDIDAACGQLRS 351


>gi|253574078|ref|ZP_04851420.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846555|gb|EES74561.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 351

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 137/375 (36%), Positives = 209/375 (55%), Gaps = 30/375 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+S+ GM +++L   LL  G    H R R   +W+ +Y + +  F  M  +  E   L
Sbjct: 1   MNKQSIYGMTKDQLAAWLLDRG----HKRGRAEMVWEGLYRKRVTAFDAMEGVHPECLAL 56

Query: 64  LNQHFSIIYPEIVDEKI---SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           L + F I   E ++E +   S DGT K+L R     +     IETV +  K   ++CV++
Sbjct: 57  LKEQFVI---ETLEEHVRQESIDGTIKFLFRLQDGNL-----IETVLMRHKFGLSVCVTT 108

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ CSFC +G  K  R+LT+ EI+ QV+  +  L       D +G      G ++S
Sbjct: 109 QVGCNIGCSFCASGLLKKSRDLTSGEIVEQVMKVQMHL-------DRQGK-----GERVS 156

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           +IV+MG+GEP  N+DN+   L +  D  GL+   R IT+STSG    I    + ++ V L
Sbjct: 157 HIVVMGIGEPFDNYDNMADFLRVIQDPKGLAIGPRHITVSTSGLADKIIEFADSDLQVNL 216

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +N+LR  ++ IN+  P+E L+ A  +Y   +N RR+T EY++LKG+ND    A
Sbjct: 217 AVSLHAPNNELRTRIMKINKAIPIEKLMAAIDYYLERTN-RRLTIEYILLKGVNDGTEHA 275

Query: 300 LNLIKILKGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
             L  +L      +NLIP+NP     +Y  S+QK ++ F + +K+ G S  +R   G DI
Sbjct: 276 QELADLLGDRFVNVNLIPYNPVDEHSQYQRSEQKSVLAFYDALKKRGLSVSVRLEHGADI 335

Query: 359 LAACGQLKSLSKRIP 373
            AACGQL+S   + P
Sbjct: 336 DAACGQLRSKQLKQP 350


>gi|218290479|ref|ZP_03494599.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239500|gb|EED06695.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 348

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 201/340 (59%), Gaps = 28/340 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY----PEIVDEKISCDGTRKW 88
            R  Q+++W+Y +  + F  M+++ + +R  LN+   I Y     ++V +    D T K+
Sbjct: 25  FRAVQLYEWMYQKRAKSFDEMTNLPKALRQRLNE---IAYLRSAEQVVRQDSKVDPTTKF 81

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           LL +P       V +E+V +  +   ++CVSSQVGC + C+FC +    ++RN+TA E++
Sbjct: 82  LLAWP-----DGVTVESVLMRHRYGNSVCVSSQVGCKMGCTFCASTLGGMIRNMTAGEMV 136

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            QVL +++LL +              +G+++S++V+MG GEP+ N+D V + + I ++  
Sbjct: 137 EQVLHSQALLDE--------------IGQRVSSVVVMGSGEPMDNYDQVMRFIDIITNEH 182

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           GL+  +R IT+ST G VP I R+ EE   + LA+SLHA ++ +R  ++P+N+ YP+  L+
Sbjct: 183 GLNIGQRHITVSTVGLVPGIRRLAEEGRNITLAVSLHAPNDAIRGRMMPVNKAYPIAKLM 242

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
           +AC  Y      RRI+FEY ++ G NDS   A  L +++KG+P  +NLIP N  P   Y 
Sbjct: 243 EACHDYY-RKTGRRISFEYALVAGENDSLECAKELAELVKGLPCHVNLIPVNYVPERGYR 301

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +D+K I  F   +  +G ++ IR   G DI AACGQL++
Sbjct: 302 RTDRKQIFAFWRALLDAGVNATIRREMGHDIAAACGQLRA 341


>gi|317489233|ref|ZP_07947750.1| cfr family radical SAM enzyme [Eggerthella sp. 1_3_56FAA]
 gi|325832221|ref|ZP_08165220.1| 23S rRNA m2A2503 methyltransferase [Eggerthella sp. HGA1]
 gi|316911634|gb|EFV33226.1| cfr family radical SAM enzyme [Eggerthella sp. 1_3_56FAA]
 gi|325486057|gb|EGC88511.1| 23S rRNA m2A2503 methyltransferase [Eggerthella sp. HGA1]
          Length = 353

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 195/358 (54%), Gaps = 30/358 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           EL   + ++G P      RT Q+ +W+Y R    +  M+++   +R  L + F +  P +
Sbjct: 20  ELASVMKELGQPA----FRTQQLQEWLYQRHASSYDEMTNLPGSLRATLAERFPLTMPTV 75

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGCSLTCSFCYT 133
           VD +IS DGTRK+L+ F        + +ETV IP ++  R T+C S+Q GC + C+FC T
Sbjct: 76  VDRQISKDGTRKYLVEF-----DDGIRVETVGIPSRNGDRLTVCFSTQAGCPIACAFCAT 130

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G +   RNLT  EI+ QVL+ +         ED+        G++++N V MG GEP  N
Sbjct: 131 GQEGFARNLTPGEIVDQVLIVQ---------EDM--------GKRVTNAVGMGQGEPFLN 173

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRN 252
           +DN   +L I +   GL    R I++ST G +P + R  EE     LA+SLHA    +R+
Sbjct: 174 YDNTMAALRILNHKKGLEIGARHISVSTCGILPGLERFSEEPEQFTLAVSLHAARQPIRD 233

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
           +++P   +Y L  L +A ++Y   +N RR+T EY+M++G+ND+P D   L K    +   
Sbjct: 234 LIMPNVARYELPSLKEALQNYVAKTN-RRVTLEYIMIEGVNDAPADLKALQKFCSNLLCH 292

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           +NLIP N   G E+  S  + I  +   I + G  + +R  RG DI  ACGQLK+  K
Sbjct: 293 VNLIPINAIEGSEFQPSSPETINLWLSEISKKGTEATLRDSRGSDISGACGQLKNTFK 350


>gi|304404145|ref|ZP_07385807.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
 gi|304347123|gb|EFM12955.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
          Length = 356

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 125/354 (35%), Positives = 198/354 (55%), Gaps = 25/354 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL+  +   G P      R  Q++ W+YV+ +R F  MS++ +  R  L+  F+ +   
Sbjct: 19  EELQAWVKDNGEPA----FRAGQLFDWLYVKRVRSFDEMSNLPKAFRQKLDDQFAFVTLS 74

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
            + +  S DGT K+L       +     IETV +      ++CV++QVGC + C+FC + 
Sbjct: 75  EITKFESKDGTVKFLF-----GLHDNHAIETVVMRHNYGNSICVTTQVGCRVGCTFCAST 129

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNLTA EI+ QV+ A+ LL               +   ++S+IV+MG GEP  N+
Sbjct: 130 LGGLKRNLTAGEIVAQVVWAQQLLD--------------ATNERVSSIVIMGTGEPFENY 175

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
           +     L I     GL+  +R IT+STSG VPNI +  +E   + LAIS+HA ++ LR+ 
Sbjct: 176 EPTMNFLRIMIHEKGLNIGQRHITVSTSGIVPNIYKFADENTQINLAISIHAPNDALRSK 235

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           L+P+NR++P   ++++ R+Y      RRITFEY ++ G+ND P  A  L ++L+G+   +
Sbjct: 236 LMPVNRRFPFNDVMESLRYYIA-KTGRRITFEYALIGGVNDRPEHAEELAQVLQGMLCHV 294

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           NLIP N  P   Y+ + + DI  F   +++   ++ IR  +G DI AACGQL++
Sbjct: 295 NLIPVNHVPERNYVRTPRDDIFEFQRILEKHKINATIRREQGHDIAAACGQLRA 348


>gi|15672161|ref|NP_266335.1| hypothetical protein L184159 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|81621772|sp|Q9CJ27|RLMN_LACLA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|12723031|gb|AAK04277.1|AE006255_7 hypothetical protein L184159 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 365

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 215/372 (57%), Gaps = 29/372 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S+ G+ R++L E  ++ G      + R +Q+W W+Y + ++ F+ MS++S      LN+H
Sbjct: 12  SIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAAFIDKLNEH 67

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +   E V  + S DGT K+L   P + +     IETV + +    ++CV++QVGC++ 
Sbjct: 68  FILNPLEQVVVQESADGTVKYLFMLPDQMM-----IETVLMRQSYGLSVCVTTQVGCNMG 122

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +G  K  R++TA EI+ Q++L +          D  G+       ++S++V+MG+
Sbjct: 123 CTFCASGILKKERDVTAGEIVSQIMLVQKYF-------DERGL-----DERVSHVVVMGI 170

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHA 245
           GEP  N++++   L + +D  GL+   R IT+ST GF+P   +    E + + LAISLHA
Sbjct: 171 GEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISLHA 230

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+LR  L+ I R  PLE L +A  +Y   +N RR+T+EY+ML G NDSP  A  L  +
Sbjct: 231 PNNELRTSLMRITRNAPLEKLFEAIDYYTETTN-RRVTYEYIMLSGENDSPEIAQQLADL 289

Query: 306 LK--GIPAKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K     + +NLIP+NP     +Y  S + +   F + +K++G +  +R   G DI AAC
Sbjct: 290 IKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDAAC 349

Query: 363 GQLKSLSKRIPK 374
           GQL+  SK+I K
Sbjct: 350 GQLR--SKQIKK 359


>gi|237727504|ref|ZP_04557985.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           D4]
 gi|229434360|gb|EEO44437.1| ribosomal RNA large subunit methyltransferase N [Bacteroides dorei
           5_1_36/D4]
          Length = 349

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 194/369 (52%), Gaps = 29/369 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G   +E+++ +  +G+P    +    QI  W+Y + +     M+++S + R  L 
Sbjct: 5   KTALLGRTLDEIQQIVRNLGMP----KFAAKQITSWLYDKKVETIDEMTNLSLKHRETLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + + +     V+E  S DGT K+L R PA        IE VYIP++ R TLCVSSQVGC 
Sbjct: 61  EGYEVGASAPVEEMRSVDGTVKYLFRTPAHNF-----IEAVYIPDEDRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NL+A +IL Q+                    IP    K++N+V M
Sbjct: 116 MNCKFCMTGKQGFTANLSAHQILNQIY------------------SIPE-REKLTNLVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP  N D V K L I +   G  +S +RIT+S+ G    + R   E    LAIS+H 
Sbjct: 157 GMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMHT 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  +ID   +Y   S  RR++FEY++ KG+NDS   A  ++K+
Sbjct: 217 PIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNDSLIYAKEIVKL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GI  ++NLI F+  P  +    D + +V F + + + G  + IR  RG DI AACG L
Sbjct: 276 LRGIECRVNLIRFHAIPNVDLEGVDMETMVAFRDYLTQHGVFATIRASRGEDIFAACGML 335

Query: 366 KSLSKRIPK 374
            +  ++  K
Sbjct: 336 STAKQQKEK 344


>gi|330996801|ref|ZP_08320673.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT
           11841]
 gi|329572523|gb|EGG54174.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT
           11841]
          Length = 348

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 203/374 (54%), Gaps = 29/374 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM   EL+    +IG+P    R    Q+ +W+Y + +     M++IS + R LLN
Sbjct: 4   KIALLGMTLSELKSVAGEIGMPSFAAR----QMAEWLYGKKVASIDEMTNISAKNRCLLN 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + +++     VD + S DGT K+L R  A   GG VE  TVYIP+  R TLCVSSQVGC 
Sbjct: 60  ERYTVGCLGPVDCQRSADGTVKYLYRTAA---GGYVE--TVYIPDGDRATLCVSSQVGCR 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q     LTA +IL Q+                    +P     ++N+V M
Sbjct: 115 MNCRFCMTGKQGFSGQLTAADILNQLY------------------SLPERD-TLTNVVFM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEPL N DNV ++  I +   G ++S +RIT+ST G    + R  +E    LA+SLH 
Sbjct: 156 GQGEPLDNLDNVLRATEILTADYGYAWSPKRITVSTVGLRKGLKRFLDESECHLAVSLHN 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              D R  L+P    Y L+ ++   R Y   ++ RR++FEY M +G+ND+   A  L+++
Sbjct: 216 PFADQRARLMPAENSYGLQEIVALLREYD-FTHQRRLSFEYTMFEGVNDTLAHAKELLRL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L G+  ++NLI F+P PG +   + ++ ++ F + +   G  S IR  RG DI AACG L
Sbjct: 275 LGGVECRMNLIRFHPVPGVDLKGTSEEGMLRFRDYLTGHGLFSTIRASRGQDIFAACGLL 334

Query: 366 KSLSKRIPKVPRQE 379
            +  ++  ++ + E
Sbjct: 335 STAKQQGVELKKTE 348


>gi|218246284|ref|YP_002371655.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC
           8801]
 gi|254807168|sp|B7K4N4|RLMN_CYAP8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|218166762|gb|ACK65499.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 8801]
          Length = 340

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 205/370 (55%), Gaps = 39/370 (10%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            + +E+L+G   +EL + + K G P      R  Q+ +W+Y +G R    +S   +  R 
Sbjct: 2   LVTEETLLGKSLDELTQWVEKQGQP----TYRGKQLHQWLYEKGARSLDEISVFPKTWRE 57

Query: 63  LLNQHFSIIYP---EIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
            L     I YP     +D + ++ D TRK+LL     C+G  + IETV IP   R T+CV
Sbjct: 58  KL-----INYPIGRSTIDYRTVAPDATRKYLL-----CLGDGLIIETVGIPTAKRLTVCV 107

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC + C FC TG     R+L A EI+ QVL  +         ED +        R+
Sbjct: 108 SSQVGCPMACDFCATGKGGYQRHLRAHEIVDQVLTVQ---------EDFQ--------RR 150

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           +S++V MGMGEPL N + V KS+ I +  +G+   +R +T+ST G    I ++    + V
Sbjct: 151 VSHVVFMGMGEPLLNLEEVVKSVKILNQDIGIG--QRSLTISTVGLPQKIIQLAHHHLQV 208

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA +  LR  L+P  + Y L+ L+  CR Y  ++  RRI+FEYV+L G+ND P 
Sbjct: 209 TLAVSLHASNQPLRETLIPSAQHYTLKNLLADCREYVNIT-GRRISFEYVLLGGVNDLPE 267

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A+ L  +LKG  + +NLIP+NP    +Y   +Q  I TF + +++   +  +R  RGL+
Sbjct: 268 QAIELANLLKGFQSHVNLIPYNPIDEADYQRPNQTQIQTFVQVLEQHKIAVSVRYSRGLE 327

Query: 358 ILAACGQLKS 367
             AACGQL++
Sbjct: 328 ANAACGQLRA 337


>gi|270296162|ref|ZP_06202362.1| cfr family radical SAM enzyme [Bacteroides sp. D20]
 gi|317480739|ref|ZP_07939825.1| cfr family radical SAM enzyme [Bacteroides sp. 4_1_36]
 gi|270273566|gb|EFA19428.1| cfr family radical SAM enzyme [Bacteroides sp. D20]
 gi|316903080|gb|EFV24948.1| cfr family radical SAM enzyme [Bacteroides sp. 4_1_36]
          Length = 346

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 196/364 (53%), Gaps = 29/364 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  L+G+   EL+  +  +G+P         QI  W+Y + +     MS++S + R L
Sbjct: 1   MQKRPLLGLTLAELQNVVKNLGMPG----FSAKQIASWLYDKKVASIDEMSNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L + + +     VD   S DGT K+L R      G    +E VYIP++ R TLCVSSQVG
Sbjct: 57  LKEIYEVGAEAPVDAMRSVDGTVKYLYR-----AGEGHFVEAVYIPDEDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLT+ +I+ Q+          P  +            K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTANLTSNQIINQI-------SSLPERD------------KLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L I + S G ++S +R+TLS+ G    + R   E    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALEIMTASYGYAWSPKRVTLSSVGLKKGLQRFIGESDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R  L+P  + + +  +++  R+Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPIPLQRRELMPAEKAFSITEIVELLRNYD-FSKQRRLSFEYIVFKGVNDSLPYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  +INLI F+  PG     +D + +  F + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRINLIRFHAIPGVNLEGADMETMTAFRDYLTSHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKS 367
            L +
Sbjct: 332 MLST 335


>gi|187932932|ref|YP_001885417.1| radical SAM enzyme, Cfr family [Clostridium botulinum B str. Eklund
           17B]
 gi|205829737|sp|B2THS9|RLMN_CLOBB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|187721085|gb|ACD22306.1| radical SAM enzyme, Cfr family [Clostridium botulinum B str. Eklund
           17B]
          Length = 347

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 127/336 (37%), Positives = 190/336 (56%), Gaps = 26/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91
            R  QI  WIY + +R+F  M ++ + +   L ++F I  PEI +  K   DGT K+L +
Sbjct: 24  FRAKQIMSWIY-KDVRNFSDMRNMPKSLIAKLEENFEIALPEIEEIYKSELDGTEKFLFK 82

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
           F    +     IE+V +  K   ++C+S+QVGC + C FC +     +RNLT  EIL Q+
Sbjct: 83  FSDGNL-----IESVLMRYKHGNSICISTQVGCRMGCKFCASTIDGRIRNLTTGEILAQI 137

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L+ ++                  +G +ISN+V+MG GEPL N++NV K L I S   GL+
Sbjct: 138 LVVQN-----------------HIGERISNVVLMGSGEPLDNYENVMKFLDIVSAEYGLN 180

Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
             +R ITLST G VP I  + + E+ + LAISLHA S++ R  ++PI  KY ++ +++AC
Sbjct: 181 IGQRHITLSTCGIVPKIYELADKELSITLAISLHAFSDEKRKEIMPIANKYSIDEILNAC 240

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           +++      RRITFEY ++K +NDS  DA  L K+LKG+   +NLIP N      +  S 
Sbjct: 241 KYFVN-KTKRRITFEYSLVKDVNDSKEDARALGKLLKGMLCHVNLIPVNEIKERTFKRSS 299

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           ++ I  F+  +   G    +R   G DI AACGQL+
Sbjct: 300 KETIQDFANILSNLGIEVTVRREMGSDINAACGQLR 335


>gi|150005131|ref|YP_001299875.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
           vulgatus ATCC 8482]
 gi|254883266|ref|ZP_05255976.1| 23S rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|294778942|ref|ZP_06744358.1| radical SAM enzyme, Cfr family [Bacteroides vulgatus PC510]
 gi|319642641|ref|ZP_07997287.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_40A]
 gi|205829665|sp|A6L3I9|RLMN_BACV8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|149933555|gb|ABR40253.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|254836059|gb|EET16368.1| 23S rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|294447251|gb|EFG15835.1| radical SAM enzyme, Cfr family [Bacteroides vulgatus PC510]
 gi|317385729|gb|EFV66662.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_40A]
          Length = 349

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 194/369 (52%), Gaps = 29/369 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G   +E+++ +  +G+P    +    QI  W+Y + +     M+++S + R  L 
Sbjct: 5   KTALLGRTLDEIQQIVRNLGMP----KFAAKQITSWLYDKKVETIDEMTNLSLKHREALK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + + +     V+E  S DGT K+L R PA        IE VYIP++ R TLCVSSQVGC 
Sbjct: 61  EGYEVGASAPVEEMRSVDGTVKYLFRTPAHNF-----IEAVYIPDEDRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NL+A +IL Q+                    IP    K++N+V M
Sbjct: 116 MNCKFCMTGKQGFTANLSAHQILNQIY------------------SIPE-REKLTNLVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP  N D V K L I +   G  +S +RIT+S+ G    + R   E    LAIS+H 
Sbjct: 157 GMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMHT 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  +ID   +Y   S  RR++FEY++ KG+NDS   A  ++K+
Sbjct: 217 PIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNDSLIYAKEIVKL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GI  ++NLI F+  P  +    D + +V F + + + G  + IR  RG DI AACG L
Sbjct: 276 LRGIECRVNLIRFHAIPNVDLEGVDMETMVAFRDYLTQHGVFATIRASRGEDIFAACGML 335

Query: 366 KSLSKRIPK 374
            +  ++  K
Sbjct: 336 STAKQQKEK 344


>gi|306829710|ref|ZP_07462899.1| cfr family radical SAM enzyme [Streptococcus mitis ATCC 6249]
 gi|304428061|gb|EFM31152.1| cfr family radical SAM enzyme [Streptococcus mitis ATCC 6249]
          Length = 361

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+ +   LN
Sbjct: 2   KPSIYSLTRQAMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           + F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  EQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNDLRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDSLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|312111725|ref|YP_003990041.1| radical SAM protein [Geobacillus sp. Y4.1MC1]
 gi|311216826|gb|ADP75430.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y4.1MC1]
          Length = 364

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 193/340 (56%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y + +  F  M+++ + +R  L+ HF I   + + ++ S DGT K+L   
Sbjct: 41  FRATQIYEWLYQKRVTHFSEMTNLPKTLREKLSGHFDITTLKTLVKQTSKDGTMKFLFE- 99

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +      ++CV++QVGC + C+FC +    L R+L A EI+ QV+
Sbjct: 100 ----LHDGYSIETVLMRHNYGNSICVTTQVGCRIGCTFCASTLGGLKRHLEAGEIVAQVV 155

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 +IS+IV+MG+GEP  N+D + K L I + + GL+ 
Sbjct: 156 KVQKELDE--------------QNERISSIVVMGIGEPFDNYDELIKFLKIVNHAKGLNI 201

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I +  +E + V  AISLHA + +LR  L+PIN+ YPL  L+DA R
Sbjct: 202 GARHITVSTSGIIPKIYQFADEGMQVNFAISLHAPTTELRTKLMPINKAYPLPKLMDAVR 261

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RR+TFEY +  G+ND    A  L +++KG+   +NLIP N  P   Y+ + +
Sbjct: 262 YYIE-KTGRRVTFEYGLFGGVNDQLEHAEQLAELIKGLKCHVNLIPVNYVPERNYVRTPR 320

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           + I  F   +K+ G +  IR  +G DI AACGQL++  ++
Sbjct: 321 EQIFAFERALKKHGINVTIRREQGHDIDAACGQLRAKERK 360


>gi|295100693|emb|CBK98238.1| 23S rRNA m(2)A-2503 methyltransferase [Faecalibacterium prausnitzii
           L2-6]
          Length = 346

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 129/354 (36%), Positives = 197/354 (55%), Gaps = 30/354 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           E+L   L  +G P      R  QI+ W++ + + DF  M+D  + +   L + F I  P 
Sbjct: 13  EQLTAELKAMGQPG----FRAKQIFHWVHQKLVTDFSAMTDQPKALLARLEEAFYIAAPI 68

Query: 75  IVDEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           I   + + DGT K+LLR     CI      ETV +      T+CVS+QVGC + C FC +
Sbjct: 69  IERRQEAKDGTVKYLLRMADGNCI------ETVVMRYHYGNTVCVSTQVGCRMGCRFCAS 122

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
                VRNL A EI  ++  A+                   +G +IS+IV+MG+GEPL N
Sbjct: 123 TQAGRVRNLEAGEICSEIYTAQK-----------------DIGERISHIVLMGIGEPLDN 165

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
           FD V + L   S   G++   R I+LST G VP I R+ E+ + + L++SLHA +ND+R+
Sbjct: 166 FDEVMRFLENISSPEGVNIGMRNISLSTCGLVPKIDRLAEKKLQLTLSVSLHAPNNDIRS 225

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            ++P+N  YP+E+L+ A R Y   +  RR++FEY M++G+NDS   A  L  +++G+ A 
Sbjct: 226 GMMPVNDAYPVEVLMQAVRRYQE-TTGRRVSFEYSMVRGVNDSDACARQLADLIRGMGAH 284

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +NLIP NP  G  Y  +D  ++  F + ++  G ++ +R   G +I AACGQL+
Sbjct: 285 VNLIPINPVDGSPYSATDAANVRRFQQKLESLGVNATVRRRLGSEISAACGQLR 338


>gi|307708474|ref|ZP_07644939.1| radical SAM enzyme, Cfr family [Streptococcus mitis NCTC 12261]
 gi|307615390|gb|EFN94598.1| radical SAM enzyme, Cfr family [Streptococcus mitis NCTC 12261]
          Length = 361

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 214/368 (58%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           + F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  EQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|227539135|ref|ZP_03969184.1| Fe-S-cluster redox protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300770634|ref|ZP_07080513.1| cfr family radical SAM enzyme [Sphingobacterium spiritivorum ATCC
           33861]
 gi|227240817|gb|EEI90832.1| Fe-S-cluster redox protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300763110|gb|EFK59927.1| cfr family radical SAM enzyme [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 352

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 196/355 (55%), Gaps = 30/355 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           ++L++ L+++G        R  QI++W++ +   DF  MS++S+ +R  L  +F+I    
Sbjct: 16  DQLKQKLVEMG----EQGFRAKQIYEWLWQKSCTDFDEMSNLSKALRDTLKANFAINAVT 71

Query: 75  IVDEKISCDGTRK---WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
           + + ++S D T K   WL             IE V IP   R T CVSSQVGCSLTC FC
Sbjct: 72  VKESQVSSDRTIKSSFWLYDNNV--------IEGVLIPTTDRMTACVSSQVGCSLTCKFC 123

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG     RNL A+EI  QV+L             I        G+ ++NIV MGMGEPL
Sbjct: 124 ATGYMDRKRNLNADEIYDQVVL-------------ISKQAEEKYGQPLTNIVYMGMGEPL 170

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDL 250
            N+ N+ KS+   +   GL+ + +RIT+ST+G    I ++G++ +   LA+SLHA ++  
Sbjct: 171 LNYANMMKSVERITSPDGLNMAAKRITVSTAGIAKMIKKLGDDGVKFNLALSLHAANDQK 230

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           RN ++PIN +  L+ L +A +++  L     ITFEY++    ND   DA  L +  K +P
Sbjct: 231 RNEIMPINEQNTLKALAEALKYFY-LKTKSPITFEYIVFNNFNDELEDAKELARFCKHVP 289

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K+NLI +NP    ++  +D   I  F+E ++  G  + +R  RG DI AACGQL
Sbjct: 290 SKVNLIEYNPISLADFTNADADKIDVFAEYLRSQGIITNVRRSRGKDIDAACGQL 344


>gi|157151429|ref|YP_001449957.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|205829902|sp|A8AVZ7|RLMN_STRGC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157076223|gb|ABV10906.1| radical SAM enzyme, Cfr family [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 362

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+    ++    Q   + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVSQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR  ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 AELLKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|295399765|ref|ZP_06809746.1| radical SAM enzyme, Cfr family [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978168|gb|EFG53765.1| radical SAM enzyme, Cfr family [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 364

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 193/340 (56%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y + +  F  M+++ + +R  L+ HF I   + + ++ S DGT K+L   
Sbjct: 41  FRATQIYEWLYQKRVTHFSEMTNLPKALREKLSGHFDITTLKTLVKQTSKDGTMKFLFE- 99

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +      ++CV++QVGC + C+FC +    L R+L A EI+ QV+
Sbjct: 100 ----LHDGYSIETVLMRHNYGNSICVTTQVGCRIGCTFCASTLGGLKRHLEAGEIVAQVV 155

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 +IS+IV+MG+GEP  N+D + K L I + + GL+ 
Sbjct: 156 KVQKELDE--------------QNERISSIVVMGIGEPFDNYDELIKFLKIVNHAKGLNI 201

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I +  +E + V  AISLHA + +LR  L+PIN+ YPL  L+DA R
Sbjct: 202 GARHITVSTSGIIPKIYQFADEGMQVNFAISLHAPTTELRTKLMPINKAYPLPKLMDAVR 261

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RR+TFEY +  G+ND    A  L +++KG+   +NLIP N  P   Y+ + +
Sbjct: 262 YYIE-KTGRRVTFEYGLFGGVNDQLEHAEQLAELIKGLKCHVNLIPVNYVPERNYVRTPR 320

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           + I  F   +K+ G +  IR  +G DI AACGQL++  ++
Sbjct: 321 EQIFAFERALKKHGINVTIRREQGHDIDAACGQLRAKERK 360


>gi|307704572|ref|ZP_07641477.1| UPF0063 protein yfgB [Streptococcus mitis SK597]
 gi|307621869|gb|EFO00901.1| UPF0063 protein yfgB [Streptococcus mitis SK597]
          Length = 361

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 214/368 (58%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G  + H      QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQGEKKFH----ADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++TF + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLTFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|332366108|gb|EGJ43864.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1059]
          Length = 357

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 209/368 (56%), Gaps = 35/368 (9%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+    ++    Q   + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLITKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE-----------------RVSHIV 153

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 154 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 213

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR  ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 214 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 272

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 273 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 332

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 333 AACGQLRS 340


>gi|261409887|ref|YP_003246128.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
 gi|261286350|gb|ACX68321.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
          Length = 353

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 218/376 (57%), Gaps = 28/376 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K S+ G+  ++L   L + G    H + R +Q+W+W+Y + +  F  M+D+  E   L
Sbjct: 1   MNKPSIYGLTLDQLTAWLGERG----HKKFRATQVWEWLYRKRVTSFSDMTDVHPECLQL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +H++I+  E   ++ S DGT K+L +     + G + IETV +  K   ++CV++QVG
Sbjct: 57  LEEHYTILTLEEHTKQESLDGTVKFLFKL----VDGNL-IETVLMRHKFGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+L+A EI+ QV+  +  L D  G  +           ++S++V
Sbjct: 112 CNIGCSFCASGLLKKSRDLSAAEIVEQVMQVQLHL-DRRGSSE-----------RVSHLV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  N++N+   + +  D  GL+   R IT+STSG    I    + ++GV LAIS
Sbjct: 160 VMGIGEPFDNYENMSDFIRVIKDHKGLAIGPRHITVSTSGLANKIVEFADSDLGVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++++R  ++ IN+  P+E L+ A  +Y   +N RRIT EY++LK +ND    AL L
Sbjct: 220 LHAPNDEIRTRIMKINKAIPIEKLMAAIDYYLEKTN-RRITLEYILLKDVNDQREHALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            +++  +   A +NLIP+NP     +Y  S ++ I  F + +K+ G S  +R   G DI 
Sbjct: 279 AELVGERRNLANVNLIPYNPVDEHSQYQRSTKESITAFYDTLKKQGISCSVRLEHGTDID 338

Query: 360 AACGQLKSLSKRIPKV 375
           AACGQL+  SK+I K 
Sbjct: 339 AACGQLR--SKQIKKA 352


>gi|308071465|ref|YP_003873070.1| hypothetical protein PPE_04773 [Paenibacillus polymyxa E681]
 gi|305860744|gb|ADM72532.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 365

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 210/368 (57%), Gaps = 26/368 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KKES+ G+  ++L   L++ G    H + R  Q+W  +Y + + DF  M++I ++   L
Sbjct: 1   MKKESIYGLTLDQLTAWLIEHG----HKKSRALQVWDALYRKRVTDFATMAEIHEDCTRL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +HFSI   E   ++ S DGT K+L R     +     IETV +  K   ++CV++QVG
Sbjct: 57  LAEHFSIETLEEHVKQQSADGTVKFLFRLQDGNL-----IETVLMRHKFGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+L++ EI+ Q++  +  L                 G ++S++V
Sbjct: 112 CNIGCSFCASGLLKKSRDLSSGEIVEQIMKVQLYLDQ------------ERPGDQVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  NF N+   + +  D  GL+   R IT+STSG    I    + ++ V LAIS
Sbjct: 160 VMGIGEPFDNFVNLSDFIRVIKDHKGLAIGPRHITVSTSGLADKIIEFADSDLHVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR  P+E L+ A  +Y   +N RRIT EY++LK +ND    AL L
Sbjct: 220 LHAPNNEIRTRIMKINRAIPIEKLMQAIDYYLDKTN-RRITLEYILLKDVNDGKEHALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            +++  +   A +NLIP+NP     +Y  S+ + I  F + +K+ G S  +R   G+DI 
Sbjct: 279 AELVGHRRNLANVNLIPYNPVDEHSQYQRSESESITGFYDVLKKQGISCSVRLEHGVDID 338

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 339 AACGQLRS 346


>gi|258647948|ref|ZP_05735417.1| radical SAM enzyme, Cfr family [Prevotella tannerae ATCC 51259]
 gi|260851788|gb|EEX71657.1| radical SAM enzyme, Cfr family [Prevotella tannerae ATCC 51259]
          Length = 360

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 204/375 (54%), Gaps = 37/375 (9%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           ++ +K++L+G+   EL++    + +P         QI +W+YV  +R+   M+++S   R
Sbjct: 3   DYQQKKNLLGLTPSELKDVARSLQLPA----FVGKQIARWLYVHHVREIDEMTNLSLAAR 58

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            LL Q + I     +D + S DGT K+L R     + G   IETV+IP+  RGTLCVSSQ
Sbjct: 59  ELLKQQYVIGNSSPIDAQYSKDGTIKYLYR----TLSGDY-IETVFIPDGDRGTLCVSSQ 113

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C+FC TG Q  V +L+A +IL Q+          P  E            +++N
Sbjct: 114 VGCKMHCAFCMTGRQGYVASLSAADILNQIY-------SLPERE------------RLTN 154

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MG GEP  N DNV ++  I +   G ++S +RIT+ST G +  + R  +E    LAI
Sbjct: 155 IVFMGQGEPFDNLDNVLRATEILTSPEGYAWSPKRITVSTIGLLQGLKRFLDESKCSLAI 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHY--------PGL-SNARRITFEYVMLKGI 292
           SLH      R  ++P+ R YP++ ++   + Y         G+ S  RR++FEY++  G+
Sbjct: 215 SLHHAVPAEREKIMPVERAYPIKDVVRLLKQYDFCRPRTNEGVGSKQRRLSFEYIVFSGV 274

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           NDS +DA  +I++LKG+  +INLI F+  P       D + ++ F + +   G  + IR 
Sbjct: 275 NDSLKDAAAIIELLKGLDCRINLIRFHQIPDTPLKGVDDQKMLRFRDYLTAHGIFTTIRA 334

Query: 353 PRGLDILAACGQLKS 367
            RG DI AACG L +
Sbjct: 335 SRGQDIFAACGLLST 349


>gi|167753918|ref|ZP_02426045.1| hypothetical protein ALIPUT_02203 [Alistipes putredinis DSM 17216]
 gi|167658543|gb|EDS02673.1| hypothetical protein ALIPUT_02203 [Alistipes putredinis DSM 17216]
          Length = 344

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 193/365 (52%), Gaps = 33/365 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           + E L G    +LE    ++ +P    R    QI +W+Y +     + MSD+S   R LL
Sbjct: 3   RHEYLYGQTLPQLEALCNRLEMP----RFAAKQIARWLYDKHATTIEAMSDLSARHRALL 58

Query: 65  NQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            + + +    PE V   IS DGT+K+L R           IE+ YIP+  R TLC+SSQ 
Sbjct: 59  AETYEVGLTAPEKV--SISTDGTKKYLYRTSQNHF-----IESAYIPDGDRATLCISSQA 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG Q L  +L+  EIL Q+          P  E            +++N+
Sbjct: 112 GCRMGCRFCATGRQGLQHSLSTNEILNQI-------ESLPERE------------RLTNV 152

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N D++  +L + + + G  +S  RIT+ST+G    + R  E   V LA+S
Sbjct: 153 VFMGMGEPLDNLDSLLPALEVLTSAWGFGWSPTRITVSTAGVASRLERFLEATQVHLAVS 212

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH      R  ++PI + +P+  +++  R Y   ++ RR++FEY+++ G+NDSPR    L
Sbjct: 213 LHNPFPHERAEIMPIEKAWPIREVVEILRRY-DFTHQRRVSFEYIVMSGLNDSPRHIREL 271

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++L GI  +INLI F+  PG  Y   D + ++ F + +   G  + IRT RG DI AAC
Sbjct: 272 CRLLDGIKCRINLIRFHKIPGSPYFSPDDRAMIAFRDALTAKGIHTTIRTSRGEDIQAAC 331

Query: 363 GQLKS 367
           G L +
Sbjct: 332 GLLST 336


>gi|325688196|gb|EGD30215.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK72]
          Length = 362

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 210/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+++    ++    Q   + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQDM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    +    E            ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDERGQNE------------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR  ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|322392191|ref|ZP_08065652.1| cfr family radical SAM enzyme [Streptococcus peroris ATCC 700780]
 gi|321144726|gb|EFX40126.1| cfr family radical SAM enzyme [Streptococcus peroris ATCC 700780]
          Length = 361

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 214/368 (58%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQGMQEWILEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I A   E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIRAFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVTEHDQYSRSPKERVMAFYDTLKKHGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|237750344|ref|ZP_04580824.1| ribosomal RNA large subunit methyltransferase N [Helicobacter bilis
           ATCC 43879]
 gi|229373874|gb|EEO24265.1| ribosomal RNA large subunit methyltransferase N [Helicobacter bilis
           ATCC 43879]
          Length = 366

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 132/350 (37%), Positives = 199/350 (56%), Gaps = 34/350 (9%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89
           + R  QI+ W+Y   + + + M +I + ++ +L Q FS   + P  ++E  S DGT+K+L
Sbjct: 32  KFRAKQIYNWLYKHYVSNIESMKNIPKNLQEILKQTFSFPNLKPIRIEE--SGDGTKKYL 89

Query: 90  LRFPARCIGGPVEI--------ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
            +         V I        E   + +  + T CVSSQVGC + C+FC T     VRN
Sbjct: 90  FQTSDGATFESVFIKMREKEYDENNRVKKSEKYTFCVSSQVGCRVGCAFCSTAKGGFVRN 149

Query: 142 LTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
           L+A EI+ QV+ L R    +    + I             NIV MGMGEPL N +NV K+
Sbjct: 150 LSAGEIVEQVVALKRD--NNLSAHKSI-------------NIVFMGMGEPLDNLNNVAKA 194

Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINR 259
           + I S   GL  + RR T+STSG  P I ++G   +GV +A+SLHAV + LR+ L+P+N+
Sbjct: 195 IKILSHEEGLCIATRRQTISTSGIAPQIEKLGAMNLGVQIALSLHAVDDSLRSRLIPMNK 254

Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
            Y +E ++ A +++P L   +RI FEY+++K IND    A  L+K+L G  AK+NLIPFN
Sbjct: 255 VYNIERVLQALKNFP-LDTRKRILFEYLVIKDINDDLASAKKLVKLLHGFRAKVNLIPFN 313

Query: 320 PWPGCEYL--CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           P    E+   C D+  +  F++ + + G  + IR  +G+DI AACGQL++
Sbjct: 314 PHAESEFQRPCIDK--MQGFADYLYKRGIVATIRESKGIDISAACGQLRA 361


>gi|163784065|ref|ZP_02179018.1| hypothetical protein HG1285_12252 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880664|gb|EDP74215.1| hypothetical protein HG1285_12252 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 355

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 125/341 (36%), Positives = 194/341 (56%), Gaps = 27/341 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLL 90
           + R  QI KW+Y + +  +  M+D+S+++R+ L ++      ++V  EK   DG+ K+L 
Sbjct: 25  KFRAKQISKWLYNKKVSSYDEMTDLSKDIRNYLKENTEFESLKLVSYEKSQIDGSIKFLW 84

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
           R      G    IE+V+IPE+   T+CVS+QVGC++ C+FCYT    L+RNLT  EI+ Q
Sbjct: 85  RLKD---GNT--IESVFIPERDHNTICVSTQVGCAVGCTFCYTTKDGLIRNLTTAEIIDQ 139

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
            L  +  +G+                 +ISN+V MGMGEPL N+DNV+K++ I +D   L
Sbjct: 140 YLQVQRFVGN---------------ENRISNVVFMGMGEPLANYDNVRKAVQIMTDKNML 184

Query: 211 SFSKRRITLSTSGFVPNIARVG---EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
             S R+IT+S+SG +  I ++    E   V LA+SL+A    +R  ++PI++   +E L+
Sbjct: 185 DLSNRKITISSSGIIAQILKMYNDPEFPQVRLAVSLNASDQKVRESIMPISKTNTIEDLM 244

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGCE 325
                 P      RI  EYV++K +ND+  DA  L+K++       K+NLIPFNP+   +
Sbjct: 245 KTLNSLP-FKTGYRIMLEYVLIKDVNDTEEDAKKLVKLIGKNKKRYKVNLIPFNPFEESD 303

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           Y   D+K +  F + +     S+ IR  +G DI AACGQL+
Sbjct: 304 YKRPDEKRVEKFQKILWEHNISAFIRWSKGRDISAACGQLR 344


>gi|261880280|ref|ZP_06006707.1| cfr family radical SAM enzyme [Prevotella bergensis DSM 17361]
 gi|270332967|gb|EFA43753.1| cfr family radical SAM enzyme [Prevotella bergensis DSM 17361]
          Length = 359

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 200/378 (52%), Gaps = 37/378 (9%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+ L+GM   EL+     +G+P         QI  W+YV+ +R    M++IS+  R  
Sbjct: 1   MNKKILLGMTPTELKAVAKSLGMPA----FTGDQIANWMYVQHVRSIDEMTNISKTNRAC 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-----------GPVEIETVYIPEKS 112
           L + + I   + +D + S DGT K+L  FP R               P  +ETVYIP+  
Sbjct: 57  LAEQYEIGCVDPIDAQHSEDGTIKYL--FPVRTTSYKEGEAGNEKTSPKFVETVYIPDGE 114

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R TLCVS +VGC + C FC TG Q     L+A +IL Q+          P  E       
Sbjct: 115 RATLCVSCEVGCKMNCLFCQTGKQGFQGYLSAADILNQIY-------SLPERE------- 160

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
                 ++NIV MG GEP+ N DNV ++  I +     ++S +RIT+ST G    + R  
Sbjct: 161 -----SLTNIVFMGQGEPMDNLDNVLRTTEILTAPYAFAWSPKRITVSTIGIKNELKRFI 215

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           EE    LA+SLH+  ++ R  L+PI R  P+E ++D  R+Y   S+ RR++FEY++ +GI
Sbjct: 216 EESDCHLAVSLHSPFHEQRAELMPIERTTPVEEIVDLLRNY-DFSHQRRLSFEYIVFEGI 274

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           NDS   A  ++++L+G+  ++NLI F+P P      +D K + +F   +   G  + IR 
Sbjct: 275 NDSKEHARAIVRLLEGLFCRVNLIRFHPIPHVNLHGADDKQMESFRNYLTTHGIHTTIRA 334

Query: 353 PRGLDILAACGQLKSLSK 370
            RG DILAACG L +  K
Sbjct: 335 SRGQDILAACGLLNTSRK 352


>gi|270292529|ref|ZP_06198740.1| radical SAM enzyme, Cfr family [Streptococcus sp. M143]
 gi|270278508|gb|EFA24354.1| radical SAM enzyme, Cfr family [Streptococcus sp. M143]
          Length = 361

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 214/368 (58%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           + F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  EQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGIEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGINCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|228474965|ref|ZP_04059693.1| radical SAM enzyme, Cfr family [Staphylococcus hominis SK119]
 gi|314936620|ref|ZP_07843967.1| radical SAM enzyme, Cfr family [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270950|gb|EEK12338.1| radical SAM enzyme, Cfr family [Staphylococcus hominis SK119]
 gi|313655239|gb|EFS18984.1| radical SAM enzyme, Cfr family [Staphylococcus hominis subsp.
           hominis C80]
          Length = 364

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 207/371 (55%), Gaps = 25/371 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
            +K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R L
Sbjct: 16  FEKQSIYSLRYDEMQNWLVEHG----QQKFRAKQIFEWLYQKRVDTIDEMTNLSKDLRQL 71

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +     V ++ S DGT K+L       +     IETV +      ++CV++QVG
Sbjct: 72  LKDNFVMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L               +   ++S IV
Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATNERVSQIV 172

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I     E+I +  A+S
Sbjct: 173 IMGIGEPFENYDEMMDFLKIVNDDNSLNIGARHITVSTSGIIPRIYDFADEQIQINFAVS 232

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +++R+ L+PINR Y +  L++A ++Y   +N RRITFEY +  G+ND    A +L
Sbjct: 233 LHAAKDEIRSKLMPINRAYNVGKLMEAIKYYQEKTN-RRITFEYGLFGGVNDQLEHARDL 291

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AAC
Sbjct: 292 AHLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351

Query: 363 GQLKSLSKRIP 373
           GQL++  +++ 
Sbjct: 352 GQLRAKERQVE 362


>gi|308069673|ref|YP_003871278.1| hypothetical protein PPE_02915 [Paenibacillus polymyxa E681]
 gi|305858952|gb|ADM70740.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 346

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 194/354 (54%), Gaps = 25/354 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL++     G P      R  QI+ W+YV+ + DF  M+++S+ +R  L + FS +   
Sbjct: 11  EELQDWAKNNGEPA----FRGGQIFDWLYVKRVNDFSEMTNLSKALREKLEEQFSFVTLS 66

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
            + +  S DGT K+L       +     IETV +      ++CV++QVGC + C+FC + 
Sbjct: 67  EITKLESKDGTVKFLF-----GLHDDHAIETVIMRHNYGNSICVTTQVGCRIGCTFCAST 121

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNLTA EI  QV+ A+ +L                   ++S+IV+MG GEP  N+
Sbjct: 122 LGGLKRNLTAGEITAQVVQAQKIL--------------DKTNERVSSIVIMGSGEPFENY 167

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
           +     L       GL+  +R IT+STSG VPNI +  +E   + LAIS+HA ++ LR+ 
Sbjct: 168 EATMTFLRTMVHEKGLNIGQRHITVSTSGIVPNIYKFADEDTQINLAISIHAPNDALRSK 227

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           L+P+NR+YP + ++D+ R+Y      RRI+FEY ++ G+ND    A  L  +LK +   +
Sbjct: 228 LMPVNRRYPFKDVMDSLRYYLA-KTGRRISFEYALIGGVNDQAEHAEELADVLKDMLCHV 286

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           NLIP N  P  +Y+ + + DI  F   +   G +  IR  +G DI AACGQL++
Sbjct: 287 NLIPVNHVPERKYVRTSRSDIFNFQRILAEKGVNVTIRREQGHDIAAACGQLRA 340


>gi|34541648|ref|NP_906127.1| ribosomal RNA large subunit methyltransferase N [Porphyromonas
           gingivalis W83]
 gi|81416860|sp|Q7MTB0|RLMN_PORGI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|34397966|gb|AAQ67026.1| conserved hypothetical protein TIGR00048 [Porphyromonas gingivalis
           W83]
          Length = 341

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/359 (38%), Positives = 194/359 (54%), Gaps = 30/359 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+GM  EEL    L++G+P    R    Q+ +WIYVR   DF  M++ISQ  R  L + +
Sbjct: 2   LLGMSLEELTTVALRMGMP----RFAGKQLAEWIYVRRATDFAEMTNISQANRQKLAEIY 57

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            +      D + S DGT+K+L  FP   +G    +E+V IPE  R TLC+SSQVGC + C
Sbjct: 58  DLGRYPWSDVQCSVDGTKKYL--FP---VGEGRFVESVLIPEGDRATLCISSQVGCKMDC 112

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG Q    NL+A EIL Q+         F   E  E          ++N+V MGMG
Sbjct: 113 LFCMTGKQGWNGNLSAAEILNQI---------FSVDEAAE----------LTNLVYMGMG 153

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EPL N D V +S+   ++  G+ +S +RIT+ST G    + R   E    LA+SLH+   
Sbjct: 154 EPLDNTDEVLRSIEALTEPWGMGWSPKRITVSTIG-AKGLERFLAESRCHLAVSLHSPFP 212

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           + R  L+P  + +P+   +D  R Y   S  RR++FEY++  G+ND  R A  L  IL+G
Sbjct: 213 EERRKLMPGEKAFPIMQTLDRIRAYD-FSGQRRVSFEYIVFDGLNDDMRHADELAAILRG 271

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           IP +INLI F+  P      SD   +  F + ++  G++  IR  RG DI AACG L +
Sbjct: 272 IPCRINLIRFHKIPAVSLRSSDTARMEAFRKRMESHGFTCTIRASRGEDIFAACGMLST 330


>gi|260584540|ref|ZP_05852286.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633]
 gi|260157563|gb|EEW92633.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633]
          Length = 375

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/343 (37%), Positives = 205/343 (59%), Gaps = 28/343 (8%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI---SCDGTRKW 88
           + R  Q+W W+Y + +  F+ M+++S+++   LN+ F+  +P +++EKI   S DGTRK+
Sbjct: 37  KFRAGQLWDWLYRKRVTSFEEMTNLSKDLIAKLNETFT--FP-VLNEKIKQQSTDGTRKF 93

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L       +     IETV +P++   ++CV++QVGC++ C+FC +G     R+L A EI+
Sbjct: 94  LFELADGLL-----IETVLMPQEYGLSICVTTQVGCNIGCTFCASGIIAKQRDLVAGEIV 148

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            QV+  +  L +          V P  G ++S+IV+MG+GEP  N+DNV K L + +   
Sbjct: 149 AQVMHVQRTLDE----------VAP--GDRVSHIVVMGIGEPFDNYDNVIKFLKVVNSDT 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           GL+   R IT+STSG  P I    +E + V LA+SLHA  ND R+ ++ INRKYP+E+++
Sbjct: 197 GLAIGARHITVSTSGLAPKILDFAKEGLQVNLALSLHAPDNDTRSKIMRINRKYPIEVVM 256

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNP-WPGC 324
           +A   Y   +N RR+TFEY+ML  +NDS   A  L  +L  K   + +NLIP+N      
Sbjct: 257 EAINEYIRTTN-RRVTFEYIMLDHVNDSVEQAQQLADLLADKKRLSYVNLIPYNKVREHD 315

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +Y  S +  +V F + +K++  +  +R   G DI AACGQL+S
Sbjct: 316 QYERSSKDRVVAFYDVLKKNHINCVVRKEFGHDIEAACGQLRS 358


>gi|309800021|ref|ZP_07694219.1| radical SAM enzyme, Cfr family [Streptococcus infantis SK1302]
 gi|308116341|gb|EFO53819.1| radical SAM enzyme, Cfr family [Streptococcus infantis SK1302]
          Length = 357

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQGMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLISKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|221632343|ref|YP_002521564.1| radical SAM enzyme, Cfr family [Thermomicrobium roseum DSM 5159]
 gi|221156232|gb|ACM05359.1| radical SAM enzyme, Cfr family [Thermomicrobium roseum DSM 5159]
          Length = 379

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 209/367 (56%), Gaps = 27/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +++E+L      ELE  +   G+P    R R  Q++ W Y + + +++ MS + + VR  
Sbjct: 24  VQRETLHDYTLGELEAWVEGRGLP----RYRARQLFHWAYQQLVLEYESMSVLPKAVRSE 79

Query: 64  LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L++   I     V +++S D  T K L R           +ETV +    R T+CVS Q+
Sbjct: 80  LSETLPISGLVPVRQRVSDDRETIKLLFRTRDDHF-----VETVVMFYPDRTTVCVSCQI 134

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ CSFC TG   L+RNL+A E++ QV+ A  L                   R+ISNI
Sbjct: 135 GCAIGCSFCATGLSGLIRNLSAGEMVSQVVHAARLAR--------------ERERRISNI 180

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MGMGEP  N+D V + ++I +D  GL    R ITLST+G VP I R+ EE   V LA+
Sbjct: 181 VVMGMGEPFHNYDAVMRFVAIVNDRQGLGIGARHITLSTAGVVPFIDRLAEEPYQVKLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA ++ LR+ LVPINR++P++ L+ ACR Y      RR+TFEYV+++ +ND  R A  
Sbjct: 241 SLHAPNDALRSQLVPINRRWPIDELLAACRRYVA-RTGRRVTFEYVLIEDVNDDERTAAE 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           L + L+G+   +NLIP+NP P    +     + I  F   ++R G  + +R  RG++I A
Sbjct: 300 LARRLRGLLCHVNLIPYNPTPAAPLFRRPGPERIERFRAVLERYGIPATVRYSRGVEIAA 359

Query: 361 ACGQLKS 367
           ACGQL++
Sbjct: 360 ACGQLRA 366


>gi|225018694|ref|ZP_03707886.1| hypothetical protein CLOSTMETH_02644 [Clostridium methylpentosum
           DSM 5476]
 gi|224948422|gb|EEG29631.1| hypothetical protein CLOSTMETH_02644 [Clostridium methylpentosum
           DSM 5476]
          Length = 348

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 204/367 (55%), Gaps = 29/367 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  ++ +  EEL E L  +G P    + R  Q++ W++ + + DF  M+++S + R  L 
Sbjct: 2   QTDILSLTYEELAEKLGALGQP----KYRAKQVFAWLHSKQVLDFAQMTNLSIQFREQLG 57

Query: 66  QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++F I   +I  + +S  D T K+L         G   +ETV +      ++CVS+QVGC
Sbjct: 58  KNFYINEIKIRKKLVSQLDDTVKYLYELR----DGEF-VETVVMRYHHGNSICVSTQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + CSFC +     VR+LT  EIL Q+  A   LG+                 KISN+V+
Sbjct: 113 RMGCSFCASTKAGFVRHLTPSEILGQIYTAERDLGE-----------------KISNVVL 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEPL NF+NV   L + S   G +   R +TLST G V  I R+ E+ + + L+ISL
Sbjct: 156 MGIGEPLDNFNNVLTFLELLSHPEGRNLGMRHVTLSTCGLVDQIYRLAEKNLQITLSISL 215

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++ LR+  +P+NR+YP++ L+ ACR Y   +  RRI+FEY ++ G NDSP  A  L 
Sbjct: 216 HAPNDGLRSQTMPVNRRYPIDELLAACRAYADRT-GRRISFEYALIDGFNDSPAHAKELA 274

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
             ++G+   +NLIP N     +Y  S Q+ +  F++ ++ SG ++ +R   G DI AACG
Sbjct: 275 SRIRGMLCHVNLIPVNRIEERDYASSSQQSVKRFAQVLESSGINATVRRTLGQDINAACG 334

Query: 364 QLKSLSK 370
           QL+   K
Sbjct: 335 QLRRDEK 341


>gi|322388131|ref|ZP_08061736.1| cfr family radical SAM enzyme [Streptococcus infantis ATCC 700779]
 gi|321141038|gb|EFX36538.1| cfr family radical SAM enzyme [Streptococcus infantis ATCC 700779]
          Length = 361

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R  ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRHGMQEWILEQG----EKKFRADQIWEWLYRKRVQTFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           + F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  EQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|296876970|ref|ZP_06901014.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
           15912]
 gi|296432005|gb|EFH17808.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
           15912]
          Length = 362

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/342 (37%), Positives = 202/342 (59%), Gaps = 26/342 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89
           + R +QIW+W+Y + ++ F+ M+++S+++   LN  F +  +   IV E  S DGT K+L
Sbjct: 24  KFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQRIVQE--SADGTVKYL 81

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
              P   +     IETV + +    ++CV++QVGC++ C+FC +G  K  R+L   EI+ 
Sbjct: 82  FELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLNNGEIVS 136

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q++L +    D  G ++           ++S+IV+MG+GEP  N++NV K +   +D  G
Sbjct: 137 QIMLVQKYF-DERGQDE-----------RVSHIVVMGIGEPFDNYNNVLKFIRTVNDDKG 184

Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           L+   R IT+STSG    I     E + V LA+SLHA +NDLR+ ++ INR +P+E L  
Sbjct: 185 LAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMKINRAFPIEKLFA 244

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-E 325
           A  +Y   +N RR+TFEY+ML  +ND    AL L ++LK I   + +NLIP+NP     +
Sbjct: 245 AIEYYIETTN-RRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQ 303

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           Y  S ++ ++ F + +K+ G +  +R   G DI AACGQL+S
Sbjct: 304 YSRSPKERVMAFYDTLKKQGVNCVVRQEHGTDIDAACGQLRS 345


>gi|253584157|ref|ZP_04861355.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
           varium ATCC 27725]
 gi|251834729|gb|EES63292.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
           varium ATCC 27725]
          Length = 350

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 209/368 (56%), Gaps = 30/368 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + ++ELEE ++ +G+ + + +    QI+ W++ + +RD   ++++S + R LL
Sbjct: 3   EKINLLNLNQQELEELVISLGMKKFYGK----QIFNWLHQKIVRDINEITNLSLKDRELL 58

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQV 122
            +   I +  ++ ++IS  D T K+L +      G    IETV +  K  R TLC+SSQV
Sbjct: 59  AEKTYIPFLNLLKQQISKIDKTEKFLFKLED---GNT--IETVLLRHKDKRNTLCISSQV 113

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           GC + C+FC TG    VRNL   EI+ QV  + R L+                 G  I+N
Sbjct: 114 GCPVKCAFCATGQDGFVRNLDVNEIINQVYTVERRLVKQ---------------GSNINN 158

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLA 240
           IV MGMGEPL N  NV K+L I S+  G++ SKR+IT+STSG VPNI ++  E++ + LA
Sbjct: 159 IVFMGMGEPLLNLSNVLKALDILSNENGINISKRKITISTSGIVPNIEKILLEKLPIELA 218

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLH+  N  R++++P+NR YPLE L    + Y   +  RRI+FEY+M+   N S  DA 
Sbjct: 219 ISLHSAINAKRDMIIPVNRSYPLEDLYAILQEYQRQT-KRRISFEYIMINEFNVSDVDAN 277

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDIL 359
            L   +      +NLIP+NP  G E+    +K I  F   +K     +  +R  +G DI 
Sbjct: 278 ALADFVHEFDHVVNLIPYNPVAGTEFERPSEKKIEKFFTFLKDVRKVNVTLRREKGTDID 337

Query: 360 AACGQLKS 367
            ACGQL+ 
Sbjct: 338 GACGQLRQ 345


>gi|138894695|ref|YP_001125148.1| ribosomal RNA large subunit methyltransferase N [Geobacillus
           thermodenitrificans NG80-2]
 gi|205829768|sp|A4IM49|RLMN_GEOTN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|134266208|gb|ABO66403.1| Radical SAM family enzyme [Geobacillus thermodenitrificans NG80-2]
          Length = 364

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 202/365 (55%), Gaps = 25/365 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S+  +  +EL+E L+  G        R +QI++W+Y + + DF  M+++ + +R  L   
Sbjct: 20  SIYSLTLDELKEWLVAHGEKP----FRATQIYEWLYGKRVTDFAEMTNLPKRLREQLASA 75

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           FSI   + + ++ S DGT K+L       +     IETV +      ++CV++QVGC + 
Sbjct: 76  FSITTLKTIVKQTSKDGTIKFLFE-----LHDGYSIETVLMRHNYGNSVCVTTQVGCRIG 130

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +    L R+L A EI+ QV+  +  L +                 ++S+IV+MG+
Sbjct: 131 CTFCASTLGGLKRHLEAGEIVAQVVQVQKALDE--------------TEERVSSIVVMGI 176

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEP  N+D + K L I + S GL+   R IT+STSG +P I +  +E + +  AISLHA 
Sbjct: 177 GEPFDNYDALIKFLRIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHAP 236

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           + +LR  L+PIN+ YPL  L++A R+Y      RR+TFEY +  G+ND    A  L ++L
Sbjct: 237 TTELRTKLMPINKAYPLPKLMEAVRYYIE-KTGRRVTFEYGLFGGVNDQLEHAEQLAELL 295

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KG+   +NLIP N  P   Y+ + +  I  F   +K+ G +  IR   G DI AACGQL+
Sbjct: 296 KGLKCHVNLIPVNYVPERNYVRTPRNQIFAFERALKKHGINVTIRREHGHDIDAACGQLR 355

Query: 367 SLSKR 371
           +  ++
Sbjct: 356 AKERK 360


>gi|322385917|ref|ZP_08059558.1| cfr family radical SAM enzyme [Streptococcus cristatus ATCC 51100]
 gi|321270032|gb|EFX52951.1| cfr family radical SAM enzyme [Streptococcus cristatus ATCC 51100]
          Length = 362

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 211/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + REE+    ++    Q   + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTREEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L       +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELSDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR  ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|325268958|ref|ZP_08135579.1| cfr family radical SAM enzyme [Prevotella multiformis DSM 16608]
 gi|324988579|gb|EGC20541.1| cfr family radical SAM enzyme [Prevotella multiformis DSM 16608]
          Length = 350

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 198/366 (54%), Gaps = 29/366 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L+GM   EL+E    +G+P         QI KW+Y + +R    M++IS+  R  L 
Sbjct: 5   KKNLLGMTLGELKEVAKSLGMPA----FTGGQIAKWLYTQHVRSIDEMTNISKANREKLA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             +++   +  D + S DGT K+L  FP     G   +ETVYIPE  R TLCVSSQVGC 
Sbjct: 61  AAYAVGCKDPTDAQYSKDGTVKYL--FPTES--GKF-VETVYIPEDDRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LTA +IL QV                    +P    K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLTATDILNQVY------------------SLPERD-KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DNV ++  I +   G  +S +RIT+S+ G    + R  EE    +AIS+H+
Sbjct: 157 GQGEPMDNLDNVLRATEILTAGFGYGWSPKRITVSSVGVKGKLKRFLEESDCHVAISMHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R+ L+P  R   +E ++    +Y   S+ RR++FEY++ KG+NDS   A  ++++
Sbjct: 217 PLHEQRSELMPAERGMSIESIVGLLANYD-FSHQRRLSFEYIVFKGVNDSEAHAKAIVRL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+  +INLI F+P P       D + +  F   + + G  + IR  RG DI AACG L
Sbjct: 276 LKGLDCRINLIRFHPIPNTPLQGVDDRKMEEFRNYLTQHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSKR 371
            +  ++
Sbjct: 336 STAKEK 341


>gi|322389001|ref|ZP_08062571.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
           903]
 gi|321144306|gb|EFX39714.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
           903]
          Length = 362

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/342 (37%), Positives = 202/342 (59%), Gaps = 26/342 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89
           + R +QIW+W+Y + ++ F+ M+++S+++   LN  F +  +   IV E  S DGT K+L
Sbjct: 24  KFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQRIVQE--SADGTVKYL 81

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
              P   +     IETV + +    ++CV++QVGC++ C+FC +G  K  R+L   EI+ 
Sbjct: 82  FELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLNNGEIVS 136

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q++L +    D  G ++           ++S+IV+MG+GEP  N++NV K +   +D  G
Sbjct: 137 QIMLVQKYF-DERGQDE-----------RVSHIVVMGIGEPFDNYNNVLKFIRTVNDDKG 184

Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           L+   R IT+STSG    I     E + V LA+SLHA +NDLR+ ++ INR +P+E L  
Sbjct: 185 LAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMKINRAFPIEKLFA 244

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-E 325
           A  +Y   +N RR+TFEY+ML  +ND    AL L ++LK I   + +NLIP+NP     +
Sbjct: 245 AIEYYIETTN-RRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQ 303

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           Y  S ++ ++ F + +K+ G +  +R   G DI AACGQL+S
Sbjct: 304 YSRSPKERVMAFYDTLKKQGVNCVVRQEHGTDIDAACGQLRS 345


>gi|196247685|ref|ZP_03146387.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16]
 gi|196212469|gb|EDY07226.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16]
          Length = 366

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 202/365 (55%), Gaps = 25/365 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S+  +  +EL+E L+  G        R +QI++W+Y + + DF  M+++ + +R  L   
Sbjct: 22  SIYSLTLDELKEWLVAHGEKP----FRATQIYEWLYGKRVTDFAEMTNLPKRLREQLASA 77

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           FSI   + + ++ S DGT K+L       +     IETV +      ++CV++QVGC + 
Sbjct: 78  FSITTLKTIVKQTSKDGTIKFLFE-----LHDGYSIETVLMRHNYGNSVCVTTQVGCRIG 132

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +    L R+L A EI+ QV+  +  L +                 ++S+IV+MG+
Sbjct: 133 CTFCASTLGGLKRHLEAGEIVAQVVQVQKALDE--------------TEERVSSIVVMGI 178

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEP  N+D + K L I + S GL+   R IT+STSG +P I +  +E + +  AISLHA 
Sbjct: 179 GEPFDNYDALIKFLRIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHAP 238

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           + +LR  L+PIN+ YPL  L++A R+Y      RR+TFEY +  G+ND    A  L ++L
Sbjct: 239 TTELRTKLMPINKAYPLPKLMEAVRYYIE-KTGRRVTFEYGLFGGVNDQLEHAEQLAELL 297

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KG+   +NLIP N  P   Y+ + +  I  F   +K+ G +  IR   G DI AACGQL+
Sbjct: 298 KGLKCHVNLIPVNYVPERNYVRTPRNQIFAFERALKKHGINVTIRREHGHDIDAACGQLR 357

Query: 367 SLSKR 371
           +  ++
Sbjct: 358 AKERK 362


>gi|329117105|ref|ZP_08245822.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parauberis NCFD
           2020]
 gi|326907510|gb|EGE54424.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parauberis NCFD
           2020]
          Length = 361

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 208/380 (54%), Gaps = 33/380 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    +   I     + R +QIW W+Y + +  F+ M++IS++   LLN
Sbjct: 2   KPSIYSLTRDEL----IAWAIENGQKKFRATQIWDWLYKKRVDSFEEMTNISKDFIALLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DNFCVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L + EI  Q++L +    +    E            ++S++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDERGKDE------------RVSHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV K L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYTNVMKFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ INR +PLE L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNDLRSQIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277

Query: 303 IKILKGIPA--KINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I     +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKNIRKLCYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKTGVNCVVRQEHGTDID 337

Query: 360 AACGQLKSLSKRIPKVPRQE 379
           AACGQL+S      K  RQE
Sbjct: 338 AACGQLRS---NTMKKDRQE 354


>gi|224107843|ref|XP_002314621.1| predicted protein [Populus trichocarpa]
 gi|222863661|gb|EEF00792.1| predicted protein [Populus trichocarpa]
          Length = 369

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 201/366 (54%), Gaps = 44/366 (12%)

Query: 38  IWKWIYVRGI-----RDFQGM------SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR 86
           +WK +Y  GI      + QG+        ++++   +L +H       + +   + DGTR
Sbjct: 16  LWKRLYGNGIWAHHVDELQGILLSHPIYCLNKDFVKMLGEHAKFKALSLENILTASDGTR 75

Query: 87  KWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQK-------- 137
           K L R     +     IETV IP ++ R T+CVSSQVGC++ C FC+TG Q         
Sbjct: 76  KILFRLDDGLV-----IETVVIPCDRGRTTVCVSSQVGCAMNCQFCFTGRQANIFHFGTL 130

Query: 138 --LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             L R+L+  EI+ Q + A+ LL +  G                +N+V MGMGEPL N D
Sbjct: 131 MGLKRHLSTAEIIEQAVFAQRLLTNEVG--------------PFTNVVFMGMGEPLQNID 176

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255
           +V K+  I     GL FS R++T+STSG VP + R   E    LA+SL+A ++++RN ++
Sbjct: 177 SVIKAADIMVHDQGLHFSPRKVTVSTSGLVPQLKRFLHESNCALAVSLNATTDEVRNWIM 236

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
           PINRKY L +L+   R   GL N+ ++ FEYVML+G+NDS  DA  LI +++GIP KINL
Sbjct: 237 PINRKYNLGLLLQTLREELGLKNSYKVLFEYVMLEGVNDSDDDAYRLIDLVQGIPCKINL 296

Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL---KSLSKRI 372
           I FNP  G ++  +  + ++ F   +  +     +R  +G D +AACGQL    ++   +
Sbjct: 297 IQFNPHCGSQFRPTSTEKMIKFRNILAEAKCVVFMRYSKGDDQMAACGQLGKPGAIQTPL 356

Query: 373 PKVPRQ 378
            +VP Q
Sbjct: 357 IRVPEQ 362


>gi|319901401|ref|YP_004161129.1| 23S rRNA m(2)A-2503 methyltransferase [Bacteroides helcogenes P
           36-108]
 gi|319416432|gb|ADV43543.1| 23S rRNA m(2)A-2503 methyltransferase [Bacteroides helcogenes P
           36-108]
          Length = 346

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 196/371 (52%), Gaps = 29/371 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+ L+G+   EL+  +  +G+P         QI  W+Y + +     MS++S   R L
Sbjct: 1   MQKQPLLGLTLSELQNVVKNLGMPG----FAAKQIASWLYDKKVLSIDEMSNLSLRHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L + + +     VD   S DGT K+L R      G    +E VYIP+  R TLCVSSQVG
Sbjct: 57  LKELYEVGAEIPVDAMRSVDGTVKYLYR-----AGEGHFVEAVYIPDDDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+          P  +            K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTANLTANQIINQI-------SSLPERD------------KLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L + + S G S+S +RITLS+ G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALEVMTASYGYSWSPKRITLSSVGLRKGLQRFIEESDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H      R  L+P  + + +  +++  R+Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HTPVPLQRRELMPAEKAFSITEIVELLRNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  +INLI F+  P  +   +D + +    + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRINLIRFHAIPEVDLEGADMETMTALRDYLTAHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKSLSKRIPK 374
            L +  +   K
Sbjct: 332 MLSTAKQEDDK 342


>gi|309790982|ref|ZP_07685522.1| radical SAM protein [Oscillochloris trichoides DG6]
 gi|308226955|gb|EFO80643.1| radical SAM protein [Oscillochloris trichoides DG6]
          Length = 375

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/381 (37%), Positives = 201/381 (52%), Gaps = 28/381 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +   SL  M   +LE  L   G P      R  QI++ +YV    D   M+D+ Q +R  
Sbjct: 1   MDNPSLYAMTLPDLEALLRAWGQPA----FRARQIYRQLYVNLAADPAAMTDLPQALRER 56

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L    ++    +V  + S DG TRK L   P       V+IETV +    R T+CVS+Q 
Sbjct: 57  LAHEATLNPLRLVRSQSSADGLTRKALFALP-----DGVQIETVLMIYADRATVCVSTQA 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA----RSLL--GDFPG-CEDIEGMVIPSV 175
           GC++ CSFC T T  L RNLTA E++ QVL A    RSL      PG     EG      
Sbjct: 112 GCAMGCSFCATATLGLRRNLTAGEMVAQVLWASREVRSLAVPATQPGHAHSEEGATWWGE 171

Query: 176 GR-------KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
            R       ++SN+V MGMGEP  N+D    ++    +  G +   R +T+ST G VP I
Sbjct: 172 ARALRRPLERVSNLVFMGMGEPFANYDRWWDAVQCLHNPQGFNMGARSMTVSTVGLVPGI 231

Query: 229 ARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            R+ +  + + LAISLHA  + LRN LVP+N +YP+  ++ A + Y      RR++FEYV
Sbjct: 232 LRLADAGLPINLAISLHAPDDALRNELVPVNTRYPIREVLAAAQTYIE-KTGRRVSFEYV 290

Query: 288 MLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
           +++G ND P  AL L K+L+   +   +NLIP+NP PG     SD + +  F + +   G
Sbjct: 291 LIQGRNDHPHQALALAKLLRSQSLICHVNLIPWNPLPGSPLARSDLQRVHAFQQVLVDYG 350

Query: 346 YSSPIRTPRGLDILAACGQLK 366
            +  +R  RG++I AACGQL 
Sbjct: 351 LACTVRVERGVEIAAACGQLA 371


>gi|319939639|ref|ZP_08013998.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           anginosus 1_2_62CV]
 gi|319811228|gb|EFW07534.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           anginosus 1_2_62CV]
          Length = 367

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/342 (37%), Positives = 200/342 (58%), Gaps = 26/342 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89
           + R +QIW+W+Y + ++ F  M++IS+++   L   F +  +   +V E  S DGT K+L
Sbjct: 31  KFRATQIWEWLYRKRVQSFAEMTNISKDLLAKLEDEFVVNPLRQRVVQE--SADGTVKYL 88

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
              P   +     IETV + +    ++CV++QVGC++ C+FC +G  K  R+L   EI+ 
Sbjct: 89  FELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLNNGEIMS 143

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q++L +          D  G      G ++S+IV+MG+GEP  N+DNV K +   +D  G
Sbjct: 144 QIMLVQKYF-------DERGQ-----GERVSHIVVMGIGEPFDNYDNVLKFVRTVNDDKG 191

Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           L+   R IT+STSG    I     E + V LA+SLHA +N+LR+ ++ INR +P+E L  
Sbjct: 192 LAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFA 251

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-E 325
           A  +Y   +N RR+TFEY+ML  +ND    AL L ++LK I   + +NLIP+NP     +
Sbjct: 252 AIEYYIETTN-RRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQ 310

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           Y  S ++ ++ F + +K++G +  +R   G DI AACGQL+S
Sbjct: 311 YSRSPKERVMAFYDTLKKNGINCVVRQEHGTDIDAACGQLRS 352


>gi|291522861|emb|CBK81154.1| 23S rRNA m(2)A-2503 methyltransferase [Coprococcus catus GD/7]
          Length = 352

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 195/337 (57%), Gaps = 25/337 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLL 90
           + R  QI++W++VR    F  M+++S+++R  L++   + + E+V++ +S  DGT K+L 
Sbjct: 27  KFRAKQIYEWMHVRLADSFDEMTNLSKDLRQKLSEQCVLTHLEMVEKYVSAIDGTAKYLF 86

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
           +     I     IE+V +  K   ++C+SSQVGC + C FC +    L R + A E+L +
Sbjct: 87  KLSDDRI-----IESVLMHYKHGNSVCISSQVGCRMGCRFCASTLGGLERQMLASEMLDE 141

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           +                   +    G ++SN+V+MG GEPL N+D + + + I + + GL
Sbjct: 142 IY-----------------QIQKDSGERVSNVVVMGTGEPLDNYDALVRMIDILTHAPGL 184

Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S+R +T+ST G VP I  + + ++ + LAISLHAV+++ R  L+PI   Y +E ++ A
Sbjct: 185 DISQRNVTVSTCGLVPKIYELADLKLQITLAISLHAVNDEKRRELMPIANTYSIEEILKA 244

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           CR+Y   +N RRITFEY ++KG+NDS  DA  L  +L+GI   INLIP NP     Y  +
Sbjct: 245 CRYYYSQTN-RRITFEYSLVKGVNDSREDAKALAALLEGINCHINLIPVNPIEERSYRQT 303

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +   ++ F   +++ G +  IR   G DI AACGQL+
Sbjct: 304 EADAVLKFKNMLEKYGRNVTIRREMGRDIQAACGQLR 340


>gi|307703606|ref|ZP_07640548.1| UPF0063 protein yfgB [Streptococcus oralis ATCC 35037]
 gi|331266156|ref|YP_004325786.1| Radical SAM superfamily, predicted Fe-S-cluster redox enzyme
           [Streptococcus oralis Uo5]
 gi|307623013|gb|EFO02008.1| UPF0063 protein yfgB [Streptococcus oralis ATCC 35037]
 gi|326682828|emb|CBZ00445.1| Radical SAM superfamily, predicted Fe-S-cluster redox enzyme
           [Streptococcus oralis Uo5]
          Length = 361

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|307706322|ref|ZP_07643134.1| UPF0063 protein yfgB [Streptococcus mitis SK321]
 gi|307708956|ref|ZP_07645416.1| UPF0063 protein yfgB [Streptococcus mitis SK564]
 gi|307618240|gb|EFN97395.1| UPF0063 protein yfgB [Streptococcus mitis SK321]
 gi|307620292|gb|EFN99408.1| UPF0063 protein yfgB [Streptococcus mitis SK564]
          Length = 361

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|315607782|ref|ZP_07882775.1| cfr family radical SAM enzyme [Prevotella buccae ATCC 33574]
 gi|315250251|gb|EFU30247.1| cfr family radical SAM enzyme [Prevotella buccae ATCC 33574]
          Length = 358

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 207/375 (55%), Gaps = 30/375 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SL+G+   EL++   ++G+P         Q+ KW+Y + ++    M++IS+  R  L 
Sbjct: 4   KTSLLGLSLAELKDVAKRLGMPA----FTGGQMAKWLYGQHVKSIDEMTNISKANREKLA 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG----GPVE-IETVYIPEKSRGTLCVSS 120
            H++I     +DE+ S DGT K+L       +G     PV+ +ETVYIP+K R TLCVS 
Sbjct: 60  GHYTIGCAAPIDEQRSKDGTVKYLFPVTTTAVGENREAPVKFVETVYIPDKDRATLCVSC 119

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC TG Q    NL+  +IL QV                    +P V  K++
Sbjct: 120 QVGCKMNCLFCQTGKQGFEGNLSVADILNQVY------------------SLPEVD-KLT 160

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIV MG GEP+ N DNV ++  I +   G ++S +RIT+S+ G    + R  EE    +A
Sbjct: 161 NIVFMGQGEPMDNLDNVLRATEILTADYGWAWSPKRITVSSVGVKNKLRRFLEESDCHVA 220

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           IS+H+   + R  L+P  R   +E +++  ++Y   S+ RR++FEY++  G+NDS   A 
Sbjct: 221 ISMHSPLPEQRAELMPAQRGMGIEEVVELLKNYD-FSHQRRLSFEYIVFGGVNDSNAHAR 279

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++++LKG+  +INLI F+  PG     +++K +    + +   G  + IR  RG DI A
Sbjct: 280 EIVRLLKGLDCRINLIRFHQIPGVALHGAEEKRMEELRDYLTAHGVFTTIRASRGEDIFA 339

Query: 361 ACGQLKSLSKRIPKV 375
           ACG L S SK+I ++
Sbjct: 340 ACGLL-STSKKIEEL 353


>gi|292670255|ref|ZP_06603681.1| cfr family radical SAM enzyme [Selenomonas noxia ATCC 43541]
 gi|292648207|gb|EFF66179.1| cfr family radical SAM enzyme [Selenomonas noxia ATCC 43541]
          Length = 346

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 196/362 (54%), Gaps = 26/362 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++ G  +E L  +L +  IP    R R  QI +W+Y RG      M ++ +E+R  L + 
Sbjct: 2   NIFGWTKEALAASLREHQIP----RFRADQIVRWMYQRGAVSLHAMDNLPKELRARLAEI 57

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           FSI  P ++    S DG T K L  F           ETV +      ++CVS+Q GC +
Sbjct: 58  FSIERPAVISRLHSADGATIKLLYEF-----ADGQTAETVLMRHAYGNSVCVSTQAGCRM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L RNLTA EI  QV+     + DF   E          G  +  IV+MG
Sbjct: 113 GCAFCASTLNGLQRNLTAGEIAAQVIG----IADFLRAE----------GGHVDTIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N+DNV  +L +  +   +  S R ITLSTSG VP I R+ EE I + L+ISLHA
Sbjct: 159 SGEPLENYDNVVAALRLLHEDYTIGLSYRGITLSTSGIVPGIERLAEEGIPISLSISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + +LR+ ++P+NR YPL  ++ A   Y   +  RR+T+EY++++ +ND PRDA  L K+
Sbjct: 219 PTEELRSEIMPVNRMYPLADVLRAACFYAERTK-RRVTYEYILIRDVNDGPRDAEQLAKL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G  A +NLIP NP         D+  I  F + + +   ++ +R   G DI AACGQL
Sbjct: 278 LRGQLASVNLIPINPVAERSLFRPDKAAIRRFQKILAQRHITATLRREMGTDIQAACGQL 337

Query: 366 KS 367
           ++
Sbjct: 338 RN 339


>gi|329926694|ref|ZP_08281104.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
 gi|328939034|gb|EGG35400.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
          Length = 353

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 218/376 (57%), Gaps = 28/376 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K S+ G+  ++L   L + G    H + R +Q+W+W+Y + +  F  M+D+  E   L
Sbjct: 1   MNKPSIYGLTLDQLTAWLGERG----HKKFRATQVWEWLYRKRVTSFSDMTDVHPECLQL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +H++I+  E   ++ S DGT K+L +     + G + IETV +  K   ++CV++QVG
Sbjct: 57  LEEHYTILTLEEHTKQESLDGTVKFLFKL----VDGNL-IETVLMRHKFGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+L+A EI+ QV+  +  L D  G  +           ++S++V
Sbjct: 112 CNIGCSFCASGLLKKSRDLSAAEIVEQVMQVQLHL-DRRGSSE-----------RVSHLV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  N++N+   + +  D  GL+   R IT+STSG    I    + ++GV LAIS
Sbjct: 160 VMGIGEPFDNYENMSDFIRVIKDHKGLAIGPRHITVSTSGLANKIVEFADSDLGVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++++R  ++ IN+  P+E L+ A  +Y   +N RRIT EY++LK +ND    AL L
Sbjct: 220 LHAPNDEIRTRIMKINKAIPIEKLMAAIDYYLEKTN-RRITLEYILLKDVNDQREHALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            +++  +   A +NLIP+NP     +Y  S ++ I  F + +K+ G S  +R   G DI 
Sbjct: 279 AELVGERRNLANVNLIPYNPVDEHSQYQRSTKESITGFYDTLKKQGISCSVRLEHGTDID 338

Query: 360 AACGQLKSLSKRIPKV 375
           AACGQL+  SK+I K 
Sbjct: 339 AACGQLR--SKQIKKA 352


>gi|289167665|ref|YP_003445934.1| hypothetical protein smi_0819 [Streptococcus mitis B6]
 gi|288907232|emb|CBJ22067.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 361

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|229162800|ref|ZP_04290757.1| Radical SAM family enzyme [Bacillus cereus R309803]
 gi|228620682|gb|EEK77551.1| Radical SAM family enzyme [Bacillus cereus R309803]
          Length = 362

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TSERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|302386502|ref|YP_003822324.1| radical SAM enzyme, Cfr family [Clostridium saccharolyticum WM1]
 gi|302197130|gb|ADL04701.1| radical SAM enzyme, Cfr family [Clostridium saccharolyticum WM1]
          Length = 350

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 196/336 (58%), Gaps = 25/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLR 91
            R  Q+++W++ +   DF  M+++   ++  L Q   +    IV+EKIS  DGTRK+L  
Sbjct: 26  FRAKQLYEWMHQKLAADFNEMTNLPNSLKETLFQQTELTSLAIVEEKISNIDGTRKYLFA 85

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                  G V IE+V +  K   ++C+SSQVGC + C FC +    L RNL+  E+L Q+
Sbjct: 86  LS----DGNV-IESVLMKYKHGNSVCISSQVGCRMGCRFCASTLDGLERNLSPSEMLDQI 140

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
                              +  + G ++SN+V+MG GEPL N+D++ + + + +D  GL+
Sbjct: 141 Y-----------------RIQKNTGERVSNVVVMGSGEPLDNYDHLVQFVRLLTDENGLN 183

Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            S+R IT+ST G VP I ++ EE + + LA+SLHA ++++R  L+P+  ++PL+ ++DAC
Sbjct: 184 ISQRNITVSTCGIVPGILKLAEEDLQITLALSLHAPNDEVRKTLMPVANRFPLKDVLDAC 243

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           + Y      RR+TFEY ++ G+ND+ ++A  L  +LKG    +NLIP NP     ++ SD
Sbjct: 244 QTYFE-KTGRRLTFEYSLVSGVNDNLKEASALAALLKGQHGHVNLIPVNPIKERNFVQSD 302

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +K I  F   ++++G +  IR   G DI  ACGQL+
Sbjct: 303 RKAIEAFKNLLEKNGINVTIRREMGRDINGACGQLR 338


>gi|310642737|ref|YP_003947495.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus
           polymyxa SC2]
 gi|309247687|gb|ADO57254.1| Ribosomal RNA large subunit methyltransferase N [Paenibacillus
           polymyxa SC2]
          Length = 355

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 198/365 (54%), Gaps = 25/365 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L K  +  +  EEL++     G P      R  QI+ W+YV+ I +F  M+++S+ +R  
Sbjct: 9   LMKPFIYDLTLEELQDWAKNNGEPA----FRGGQIFDWLYVKRINNFSEMTNLSKALREK 64

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L + FS +    + +  S DGT K+L       +     IETV +      ++CV++QVG
Sbjct: 65  LEEQFSFVTLHEITKLESKDGTVKFLF-----GLHDDHAIETVIMRHNYGNSICVTTQVG 119

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNLTA EI  QV+ A+ +L                   ++S+IV
Sbjct: 120 CRIGCTFCASTLGGLKRNLTAGEITAQVVQAQKIL--------------DKTNERVSSIV 165

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG GEP  N++     L       GL+  +R IT+STSG VPNI +  +E   + LAIS
Sbjct: 166 IMGSGEPFENYEATMTFLRTMIHEKGLNIGQRHITVSTSGIVPNIYKFADEDTQINLAIS 225

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           +HA ++ LR+ L+P+NR+YP + ++D+ R+Y      RRI+FEY ++ G+ND    A  L
Sbjct: 226 IHAPNDALRSKLMPVNRRYPFKDVMDSLRYYLA-KTGRRISFEYALIGGVNDQAEHAEEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK +   +NLIP N  P  +Y+ + + DI  F   +   G +  IR  +G DI AAC
Sbjct: 285 ADVLKDMLCHVNLIPVNHVPERKYVRTSRSDIFNFQRILAEKGVNVTIRREQGHDIAAAC 344

Query: 363 GQLKS 367
           GQL++
Sbjct: 345 GQLRA 349


>gi|229086417|ref|ZP_04218593.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock3-44]
 gi|228696933|gb|EEL49742.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock3-44]
          Length = 362

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E++E L + G P    + R  QI+ W+Y + +++++ M+++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQEWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMTNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   G+    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMAFLRIVNHEKGIHIGARHMTVSTSGIIPKIYKFAEEDMQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + +LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAPNTELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 QLLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|322376321|ref|ZP_08050814.1| radical SAM enzyme, Cfr family [Streptococcus sp. M334]
 gi|321282128|gb|EFX59135.1| radical SAM enzyme, Cfr family [Streptococcus sp. M334]
          Length = 361

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|313901449|ref|ZP_07834906.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468277|gb|EFR63734.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter subterraneus
           DSM 13965]
          Length = 353

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 199/359 (55%), Gaps = 26/359 (7%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           +G++ EEL   L   G P      R  QI+ W + RG+  F  M+D+ +E+R  L +   
Sbjct: 7   VGLLPEELARELEAWGQPA----YRGRQIFAWFHRRGVTRFSAMTDLPRELRERLAEQGD 62

Query: 70  IIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
              P +   ++   DGTRK+LL      +     IETV +  +   +LCVSSQVGC++ C
Sbjct: 63  PAVPAVRRLQVDPEDGTRKYLLELADGQL-----IETVLMRHRYGLSLCVSSQVGCAMGC 117

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC +    LVRNLTA E+  Q+L+    L +               G ++S++V+MG+G
Sbjct: 118 RFCASTLGGLVRNLTAAEMAGQLLVVNRDLAER--------------GERVSHLVVMGIG 163

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EPL N D   + L +A   +G   S R +T+STSG VP I ++  E + + LA+SLHA +
Sbjct: 164 EPLQNLDATLQFLRVAHHPLGAGISYRHMTVSTSGLVPRIRQLAREGLPITLAVSLHAPN 223

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           + LR+ L+P+NR++P+  L+ ACR Y      RRITFEYV+++ +ND P  A  L +++ 
Sbjct: 224 DALRSWLMPVNRRWPIAELMAACREYVE-ETGRRITFEYVLIEDVNDRPEHARELARLVG 282

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            + A +NLIP+NP     +     + +  F+  ++R G +  +R   G  I AACGQL+
Sbjct: 283 PLHAHVNLIPWNPVSERPFKAPSPERVQAFAAELRRQGVNVTVRRELGQRIEAACGQLR 341


>gi|229098333|ref|ZP_04229280.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock3-29]
 gi|229104426|ref|ZP_04235095.1| Radical SAM family enzyme [Bacillus cereus Rock3-28]
 gi|229117350|ref|ZP_04246728.1| Radical SAM family enzyme [Bacillus cereus Rock1-3]
 gi|228666250|gb|EEL21714.1| Radical SAM family enzyme [Bacillus cereus Rock1-3]
 gi|228679124|gb|EEL33332.1| Radical SAM family enzyme [Bacillus cereus Rock3-28]
 gi|228685231|gb|EEL39162.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock3-29]
          Length = 362

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEELQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|324995259|gb|EGC27171.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK678]
          Length = 362

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 214/369 (57%), Gaps = 32/369 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+    ++    Q   + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKI---SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
             F ++ P  + ++I   S DGT K+L   P   +     IETV + +    ++CV++QV
Sbjct: 58  DQF-VVNP--LKQRIVQGSADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQV 109

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+I
Sbjct: 110 GCNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHI 157

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+
Sbjct: 158 VVMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAV 217

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +NDLR  ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    A  
Sbjct: 218 SLHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKE 276

Query: 302 LIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI
Sbjct: 277 LAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDI 336

Query: 359 LAACGQLKS 367
            AACGQL+S
Sbjct: 337 DAACGQLRS 345


>gi|255038476|ref|YP_003089097.1| radical SAM enzyme, Cfr family [Dyadobacter fermentans DSM 18053]
 gi|254951232|gb|ACT95932.1| radical SAM enzyme, Cfr family [Dyadobacter fermentans DSM 18053]
          Length = 350

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 185/335 (55%), Gaps = 22/335 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++WI+ +    F  M+++S   R L+N+HF I   ++  ++ S DGT K   + 
Sbjct: 30  FRAKQIYEWIWKKSAHSFDEMTNLSLATRELMNEHFVIHSLDVAKKQHSNDGTVKSAFKL 89

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G + +E V IP   R T CVSSQVGCSLTC FC TG     RNL A EI  QV+
Sbjct: 90  ----FDGNL-VEGVLIPAADRMTACVSSQVGCSLTCKFCATGYMDRKRNLEAGEIYDQVV 144

Query: 153 -LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            +AR     F                 ++NIV MGMGEPL N+ NV KS+   +   GL+
Sbjct: 145 AIARQAEATFNA--------------PLTNIVYMGMGEPLLNYANVLKSIEYITSPKGLN 190

Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            S +RIT+ST+G    I ++ + E+   LA+SLHA ++  RN ++PIN    L+ L DA 
Sbjct: 191 MSPKRITVSTAGIAKMITKLADDEVRFRLALSLHAANDKKRNQIMPINESNSLDNLADAL 250

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
            ++   +   RITFEY++    NDS +DA  L +  K +PA++N+I +NP    ++  ++
Sbjct: 251 NYFYKKT-GNRITFEYIVFNNFNDSLQDAKELWEFCKRVPARVNIIEYNPIAEADFKNTE 309

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              +  F+  ++  G S  +R  RG DI AACGQL
Sbjct: 310 ADRLDKFAAFLEDRGVSVHVRRSRGKDIDAACGQL 344


>gi|291458606|ref|ZP_06597996.1| radical SAM enzyme, Cfr family [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291419139|gb|EFE92858.1| radical SAM enzyme, Cfr family [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 362

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 195/350 (55%), Gaps = 39/350 (11%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91
            R  QI+ W++ R    F  MS++S  +R  L +HF +  PE V     S DGTRK++ R
Sbjct: 24  FRAEQIYSWLHERLCASFDEMSNLSLPLREKLREHFRLFLPEPVRILSSSLDGTRKFIFR 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                I     IE+V++  +   T+C+SSQVGC + C FC +  + L RNL+A E+L QV
Sbjct: 84  LEDGHI-----IESVFMRYRHGNTVCISSQVGCRMGCRFCASTLEGLARNLSAAEMLTQV 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
              + LLG+                 +ISN+V+MG GEPL N++N+ K + + SD  GL 
Sbjct: 139 YQIQRLLGE-----------------RISNVVVMGSGEPLDNYENLTKFVRMISDERGLH 181

Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            S+R +T+ST G VP + R+ EE   + LA+SLHA ++++R  L+PI  +YPL  L+ A 
Sbjct: 182 LSQRNLTVSTCGLVPELFRLSEEGFQLTLALSLHAPNDEIRRRLMPIAARYPLSELLPAV 241

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--------------KGIPAKINLI 316
           RHY   +  RR++FEY +++ +ND+  +A  L  +L              KG P  +NLI
Sbjct: 242 RHYFERT-GRRVSFEYSVVRDLNDTREEAEALSSLLKKLRDEGEGSAGQQKGFPLHVNLI 300

Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           P NP     +   +++ I  F   ++++G S+ IR   G DI  ACGQL+
Sbjct: 301 PVNPIRERSWERPERRRIEDFQHILEKNGISATIRREMGADISGACGQLR 350


>gi|218234565|ref|YP_002368665.1| conserved hypothetical protein TIGR00048 [Bacillus cereus B4264]
 gi|229152063|ref|ZP_04280258.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           m1550]
 gi|254807154|sp|B7HDY7|RLMN_BACC4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|218162522|gb|ACK62514.1| conserved hypothetical protein TIGR00048 [Bacillus cereus B4264]
 gi|228631412|gb|EEK88046.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           m1550]
          Length = 362

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 209/369 (56%), Gaps = 25/369 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  
Sbjct: 14  MKKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDK 69

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVG
Sbjct: 70  LSNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVG 124

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V
Sbjct: 125 CRIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLV 170

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AIS
Sbjct: 171 VMGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAIS 230

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +++LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L
Sbjct: 231 LHAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEEL 289

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AAC
Sbjct: 290 AALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAAC 349

Query: 363 GQLKSLSKR 371
           GQL++  ++
Sbjct: 350 GQLRAKERK 358


>gi|322375441|ref|ZP_08049954.1| radical SAM enzyme, Cfr family [Streptococcus sp. C300]
 gi|321279704|gb|EFX56744.1| radical SAM enzyme, Cfr family [Streptococcus sp. C300]
          Length = 361

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIEKTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|315613373|ref|ZP_07888282.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 49296]
 gi|315314608|gb|EFU62651.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 49296]
          Length = 361

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+ +   LN
Sbjct: 2   KPSIYSLTRQAMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           + F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  EQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|228940952|ref|ZP_04103511.1| Radical SAM family enzyme [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228973881|ref|ZP_04134457.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980471|ref|ZP_04140781.1| Radical SAM family enzyme [Bacillus thuringiensis Bt407]
 gi|228779291|gb|EEM27548.1| Radical SAM family enzyme [Bacillus thuringiensis Bt407]
 gi|228785906|gb|EEM33909.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818788|gb|EEM64854.1| Radical SAM family enzyme [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326941633|gb|AEA17529.1| radical SAM protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 362

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEELQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|229019062|ref|ZP_04175900.1| Radical SAM family enzyme [Bacillus cereus AH1273]
 gi|229025306|ref|ZP_04181725.1| Radical SAM family enzyme [Bacillus cereus AH1272]
 gi|228735997|gb|EEL86573.1| Radical SAM family enzyme [Bacillus cereus AH1272]
 gi|228742230|gb|EEL92392.1| Radical SAM family enzyme [Bacillus cereus AH1273]
          Length = 362

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 207/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   G+    R +T+STSG VP I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+ + +LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HSANTELRSKLMPINRAYKLPDLMEAVKYYVNRT-GRRITFEYGLFGGENDQVEQAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|167630204|ref|YP_001680703.1| radical sam enzyme, cfr family, putative [Heliobacterium
           modesticaldum Ice1]
 gi|205829773|sp|B0TGT1|RLMN_HELMI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|167592944|gb|ABZ84692.1| radical sam enzyme, cfr family, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 385

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 199/372 (53%), Gaps = 34/372 (9%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L G+  EE+   L   G P      R  QI+KW+  R +R+   M+D+ Q +R  L + 
Sbjct: 34  DLRGLFPEEIAALLTPWGQPT----FRGKQIFKWLQNRAVREVAEMTDLPQALRVRLGEA 89

Query: 68  --FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-----EKSRGTLCVSS 120
                + PE    +++ DGT K+L R     +     IE+V +P      + R T+C+S+
Sbjct: 90  GWLKPLAPE--RHRVARDGTEKYLWRLADGEL-----IESVLMPYRRAQTRDRVTVCLST 142

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKI 179
           Q GC L+C FC TG Q   RNLTA EI+ QVL +      D P               K+
Sbjct: 143 QAGCPLSCRFCATGRQGFRRNLTAAEIVGQVLDITHEKRKDDPDF-------------KV 189

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           +N+V MGMGEP  N+DNV++++ + +   G +  +RRIT+ST+G VP I R  +E   V 
Sbjct: 190 TNLVFMGMGEPFLNYDNVRRAIGLFTHPEGQAIGQRRITVSTAGIVPGIDRFADEDWEVN 249

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  +  R+  +P+N ++PL  +++ACR Y      RR++ EY ++ G+ND   D
Sbjct: 250 LALSLHAADDKQRSEWMPVNDRFPLAQVLEACRRY-WEKTRRRLSVEYALMAGVNDRLED 308

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L  + KG P  +NLIP N   G      +++    F   ++R G  + IR  RG DI
Sbjct: 309 ARRLASLFKGWPIHLNLIPVNAVAGIGVRRPEREPTERFLAELRRWGVDAVIREERGQDI 368

Query: 359 LAACGQLKSLSK 370
            AACGQL+  +K
Sbjct: 369 EAACGQLRGAAK 380


>gi|315221970|ref|ZP_07863881.1| radical SAM enzyme, Cfr family [Streptococcus anginosus F0211]
 gi|315188936|gb|EFU22640.1| radical SAM enzyme, Cfr family [Streptococcus anginosus F0211]
          Length = 367

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/346 (36%), Positives = 200/346 (57%), Gaps = 26/346 (7%)

Query: 28  QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGT 85
           Q   + R +QIW+W+Y + ++ F  M++IS+ +   L   F +  +   +V E  S DGT
Sbjct: 27  QGEKKFRATQIWEWLYRKRVQSFTEMTNISKGLLAKLEDEFVVNPLKQRVVQE--SADGT 84

Query: 86  RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145
            K+L   P   +     IETV + +    ++CV++QVGC++ C+FC +G  K  R+L   
Sbjct: 85  VKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLNNG 139

Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           EI+ Q++L +          D  G      G ++S+IV+MG+GEP  N+DNV K +   +
Sbjct: 140 EIMSQIMLVQKYF-------DERGQ-----GERVSHIVVMGIGEPFDNYDNVLKFVRTVN 187

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264
           D  GL+   R IT+STSG    I     E + V LA+SLHA +N+LR+ ++ INR +P+E
Sbjct: 188 DDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIE 247

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWP 322
            L  A  +Y   +N RR+TFEY+ML  +ND    AL L ++LK I   + +NLIP+NP  
Sbjct: 248 KLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVS 306

Query: 323 GC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
              +Y  S ++ ++ F + +K++G +  +R   G DI AACGQL+S
Sbjct: 307 EHDQYSRSPKERVMAFYDTLKKNGINCVVRQEHGTDIDAACGQLRS 352


>gi|306825018|ref|ZP_07458361.1| cfr family radical SAM enzyme [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432845|gb|EFM35818.1| cfr family radical SAM enzyme [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 361

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 214/368 (58%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+ +   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           + F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  EQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K++G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPRERVMAFYDTLKKNGINCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|251797737|ref|YP_003012468.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp.
           JDR-2]
 gi|247545363|gb|ACT02382.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
          Length = 348

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 123/354 (34%), Positives = 202/354 (57%), Gaps = 25/354 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           ++L++ + + G P      R  Q++ W+YV+ ++ F+ MS++ + +R  L + F  +   
Sbjct: 11  DQLQDWMKENGEPA----FRGGQLFDWLYVKRVKSFEEMSNLPKPLREKLEESFQFVTLS 66

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
            + +  S DGT K+L       +     IETV +  +   ++CV++QVGC + C+FC + 
Sbjct: 67  EITKFESKDGTVKFLF-----GLHDNHAIETVIMRHEYGNSICVTTQVGCRIGCTFCAST 121

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNLTA EI+ QV+ A+ +L               + G ++S+IV+MG GEP  N+
Sbjct: 122 LGGLKRNLTAGEIVAQVVTAQQML--------------DATGERVSSIVIMGSGEPFENY 167

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
           D     L I     GL+  +R IT+STSG VP++ +  EE   + LAIS+HA ++ LR+ 
Sbjct: 168 DATMTFLRIMIHEKGLNIGQRHITVSTSGIVPSMYKFTEENTQINLAISIHAPNDKLRSK 227

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           L+P+NR++P E ++ ACR++      RRITFEY ++ G+ND    A  L  +L+G+   +
Sbjct: 228 LMPVNRRFPFEDVMAACRNHIA-KTGRRITFEYALIGGVNDQAEHAQELADVLQGMLCHV 286

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           NLIP N  P   Y+ + + DI  F   ++++  +  IR  +G DI AACGQL++
Sbjct: 287 NLIPVNHVPERNYVRTPRNDIFEFQRILEKNKINCTIRREQGHDIAAACGQLRA 340


>gi|30021952|ref|NP_833583.1| radical SAM protein [Bacillus cereus ATCC 14579]
 gi|206971090|ref|ZP_03232041.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH1134]
 gi|228960080|ref|ZP_04121744.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229047551|ref|ZP_04193141.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           AH676]
 gi|229111335|ref|ZP_04240888.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock1-15]
 gi|229129140|ref|ZP_04258113.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           BDRD-Cer4]
 gi|229146435|ref|ZP_04274806.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           BDRD-ST24]
 gi|81580507|sp|Q819U3|RLMN_BACCR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|29897508|gb|AAP10784.1| Radical SAM family enzyme [Bacillus cereus ATCC 14579]
 gi|206733862|gb|EDZ51033.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH1134]
 gi|228637068|gb|EEK93527.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           BDRD-ST24]
 gi|228654377|gb|EEL10242.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           BDRD-Cer4]
 gi|228672111|gb|EEL27402.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock1-15]
 gi|228723798|gb|EEL75153.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           AH676]
 gi|228799596|gb|EEM46549.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 362

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 209/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I   + + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLKTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|56962424|ref|YP_174150.1| hypothetical protein ABC0650 [Bacillus clausii KSM-K16]
 gi|81601050|sp|Q5WKB6|RLMN_BACSK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|56908662|dbj|BAD63189.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 356

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 218/375 (58%), Gaps = 32/375 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + KES+ G+   +L + L++ G    H + R +Q+W W+Y + +  F  M++++++   L
Sbjct: 1   MSKESIYGLTMAQLTDWLMERG----HKKFRATQVWDWLYRKRVTTFAEMTNVNKDCLQL 56

Query: 64  LNQHFSIIYPEIVDEKI---SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           L  HF+I   E + E +   S DGT K+L R     +     IETV +  K   ++CV++
Sbjct: 57  LEDHFAI---ETMSEHVRQESKDGTIKFLFRLQDGNL-----IETVLMRHKYGFSVCVTT 108

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ CSFC +G     R+L++ EI+ Q++  +  L D  G E+           ++S
Sbjct: 109 QVGCNIGCSFCASGLLTKNRDLSSGEIVEQIMKVQFHL-DQVGKEE-----------RVS 156

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           ++V+MG+GEP  NF N    L I  D  GL+   R IT+STSG    I    + ++ V L
Sbjct: 157 HVVVMGIGEPFDNFQNTVDFLEIIKDHKGLAIGARHITVSTSGLAHKIYEFADLKLQVNL 216

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +N+LR+ ++ IN+ +P+E L+D+  +Y   +N RR+T+EY+++K +ND   +A
Sbjct: 217 AVSLHAPNNELRSRIMKINKAFPIEKLMDSINYYIEKTN-RRVTYEYILIKDVNDHKEEA 275

Query: 300 LNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
           L L +++  K   + +NLIP+NP     +Y  S+ + I  F + +K+ G +  +R   G 
Sbjct: 276 LQLAELIGDKRHLSYVNLIPYNPVDEHSQYQRSEPEAISQFFDTLKKKGINCGVRLEHGT 335

Query: 357 DILAACGQLKSLSKR 371
           DI AACGQL+S  ++
Sbjct: 336 DIDAACGQLRSKQEK 350


>gi|317151954|ref|YP_004120002.1| radical SAM enzyme, Cfr family [Desulfovibrio aespoeensis Aspo-2]
 gi|316942205|gb|ADU61256.1| radical SAM enzyme, Cfr family [Desulfovibrio aespoeensis Aspo-2]
          Length = 344

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 188/336 (55%), Gaps = 19/336 (5%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R  QIW+W++ + +R  +GM+++S+ +R  L     I +PE+   + S DGT K+LLR
Sbjct: 24  RFRAEQIWQWLWQKRVRGVEGMTNLSKPLREKLAAMAVITWPEVARVQQSEDGTIKFLLR 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +G    +ETV IP + R + C+S+QVGC++ C+FC TG     RN+T  EIL QV
Sbjct: 84  -----LGDGKLVETVLIPMQDRYSQCLSTQVGCAMGCTFCSTGQLGFERNMTYGEILGQV 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L+ R  L D        GM        + N+V MGMGEPL N D + K L+      GLS
Sbjct: 139 LVGRQYLED-------RGM------NPLKNLVFMGMGEPLLNLDTLLKVLNDLPCERGLS 185

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S RR  +ST GF   +  +GE    + AISLHA + +LR  ++P   +  L+ L+ A R
Sbjct: 186 LSWRRSMVSTVGFPEQLRILGEMEVALPAISLHAPTQELRARIMPKAARVHLDDLMAALR 245

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            YP +    RITFEY++LKG+NDS   A  L +++     KINLI +N   G  Y   D+
Sbjct: 246 AYP-MRPRERITFEYLLLKGVNDSLEHADQLARLIDRKKGKINLIAYNATEGLPYEAPDR 304

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             +  F + +   G ++ IR   G DI AACGQLK+
Sbjct: 305 AQVEAFEKRLWDHGLTAFIRRSMGADIKAACGQLKA 340


>gi|218899017|ref|YP_002447428.1| hypothetical protein BCG9842_B1280 [Bacillus cereus G9842]
 gi|228902368|ref|ZP_04066524.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 4222]
 gi|228966814|ref|ZP_04127858.1| Radical SAM family enzyme [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|254807152|sp|B7IUM3|RLMN_BACC2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|218543794|gb|ACK96188.1| conserved hypothetical protein TIGR00048 [Bacillus cereus G9842]
 gi|228792913|gb|EEM40471.1| Radical SAM family enzyme [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857266|gb|EEN01770.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 4222]
          Length = 362

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQIHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEELQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|242277580|ref|YP_002989709.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           salexigens DSM 2638]
 gi|242120474|gb|ACS78170.1| radical SAM enzyme, Cfr family [Desulfovibrio salexigens DSM 2638]
          Length = 351

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 191/336 (56%), Gaps = 19/336 (5%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R RT QIW+W++ +G+ DF  M+++++ +R  L     I +P++   + S DGT K LLR
Sbjct: 30  RFRTDQIWQWLWQKGVEDFDSMTNLAKNLRDELKAKAVINHPQVDVVQTSKDGTIKLLLR 89

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +     +ETV IP + R T C+S+QVGC++ C+FC TG     RN++  E+L QV
Sbjct: 90  LKDGAL-----VETVLIPMEGRYTQCLSTQVGCAMACTFCNTGLMGFERNMSMSEMLGQV 144

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L  R  L         E  + P     + N+V MGMGEPL N DN+ ++L   ++  GLS
Sbjct: 145 LAGRKYLR--------ENNLDP-----LKNLVFMGMGEPLLNLDNLIRTLRNLNNQDGLS 191

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           F  RRIT+S+ GFV  +  +G+    + AISLHA + +LR  ++P   K  +E L+ A  
Sbjct: 192 FVPRRITVSSVGFVKQLEELGKTGLTLPAISLHAPTQELREKIMPKAAKTHIEDLLAAMD 251

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            +P L    ++T+EY++L G+NDS   A  L+K+L     K+NLI +NP     Y    +
Sbjct: 252 RFP-LKPREKVTYEYLLLGGVNDSIEHAKQLVKLLGHRRCKVNLIAYNPGDEPLYKAPTR 310

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           + ++ F + +     ++ IR   G DI AACGQLK+
Sbjct: 311 EKVLAFEKYLWDKKITATIRRSMGQDIKAACGQLKA 346


>gi|332522196|ref|ZP_08398448.1| 23S rRNA m2A2503 methyltransferase [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313460|gb|EGJ26445.1| 23S rRNA m2A2503 methyltransferase [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 360

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 206/368 (55%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    +   I     R R +QIW W+Y + ++ F+ M++IS++   LLN
Sbjct: 2   KPSIYSLTRDEL----IDWAIANGQKRFRATQIWDWLYKKRVQSFEEMTNISKDFISLLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           + F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  EQFCLNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L + EI  Q++L +    D  G ++           ++S++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYF-DERGQDE-----------RVSHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYKNVMTFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +PLE L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S +  +  F + +K++G +  +R   G DI 
Sbjct: 278 AALTKNIRKLSYVNLIPYNPVSEHDQYSRSPKARVEAFYDVLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|296127640|ref|YP_003634892.1| radical SAM enzyme, Cfr family [Brachyspira murdochii DSM 12563]
 gi|296019456|gb|ADG72693.1| radical SAM enzyme, Cfr family [Brachyspira murdochii DSM 12563]
          Length = 342

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 135/365 (36%), Positives = 209/365 (57%), Gaps = 34/365 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S++ +  E+L +   +   P+ H     SQ+  WIY +    F+ MS+I + +R LL
Sbjct: 3   KKISIMNVSEEDLSKFCEENNFPKFH----ASQVLDWIYKKYAVSFEDMSNIPKNLRALL 58

Query: 65  NQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           ++++ I   +I  E IS D  GT+K L+    +      +IE+V + +K R T C+SSQV
Sbjct: 59  DENYFIHNSKI--ETISEDEYGTKKLLISLYDK-----KKIESVILQKKDRVTFCLSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC   C+FC TG+  L RNLTA+EIL + +L R                  +V +K+++I
Sbjct: 112 GCGYGCAFCATGSMGLSRNLTADEILAEFILMR------------------AVTKKVNSI 153

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N  N+ K++   +   G +   R IT+STSG V  I ++ E ++   LA+
Sbjct: 154 VFMGMGEPLANTKNLFKAIETINSFKGFNLGIRHITISTSGEVVGIKQLIEKDLDCRLAV 213

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH++ N++R+ ++PIN++YP+E L+   + Y   +  R ITFE+V++K +NDS  DA  
Sbjct: 214 SLHSLKNEVRDKIMPINKRYPIENLMAVLKRYSK-NGKRMITFEWVLIKDVNDSVNDAYR 272

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT-FSECIKRSGYSSPIRTPRGLDILA 360
           L+ + K  P K+N+IP NP     +L    KDI+  F   +K +G     R  +G +ILA
Sbjct: 273 LVNLKKEFPFKVNVIPMNPVEHAPHLQRPNKDIILRFKSILKDNGIEVVERFKQGQEILA 332

Query: 361 ACGQL 365
            CGQL
Sbjct: 333 GCGQL 337


>gi|300871714|ref|YP_003786587.1| putative Fe-S cluster redox enzyme [Brachyspira pilosicoli 95/1000]
 gi|300689415|gb|ADK32086.1| predicted Fe-S cluster redox enzyme [Brachyspira pilosicoli
           95/1000]
          Length = 342

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/365 (37%), Positives = 209/365 (57%), Gaps = 34/365 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S++ +  E+L +  ++   P+ H     SQI  WIY +    F  MS+I +++R LL
Sbjct: 3   KKISIMNVSEEDLSKFCIENNFPKFH----ASQILNWIYKKYAISFDEMSNIPKDLRVLL 58

Query: 65  NQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           ++++ I   +I  E I+ D  GTRK L+    +      +IE+V + +  R T C+SSQV
Sbjct: 59  DENYFIHNSKI--ESITEDEYGTRKLLISLYDK-----KKIESVILGKNDRVTFCLSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC   C+FC TG+  L RNLTA+EIL + +L R                  +V +K+++I
Sbjct: 112 GCGYGCAFCATGSMGLSRNLTADEILAEFILMR------------------AVTKKVNSI 153

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N  N+ K++   +   G +   R IT+STSG V  I ++ E ++   LA+
Sbjct: 154 VFMGMGEPLANTKNLFKAIDTINSYKGFNLGIRHITISTSGEVAGIKQLIERDLDCRLAV 213

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH++ N++R+ ++PIN++YP+E LI+  + Y   +  R ITFE+V++K +NDS  DA  
Sbjct: 214 SLHSLKNEVRDKIMPINKRYPIENLINILKRYSK-NGKRMITFEWVLIKDVNDSVNDAYR 272

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT-FSECIKRSGYSSPIRTPRGLDILA 360
           L+ + K  P K+N+IP NP      L    KDI+  F   +K +G     R  +G +ILA
Sbjct: 273 LVNLKKEFPFKVNIIPMNPVEHAPELQRPNKDIILRFKSILKDNGIEVVERFKQGQEILA 332

Query: 361 ACGQL 365
            CGQL
Sbjct: 333 GCGQL 337


>gi|228909689|ref|ZP_04073512.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 200]
 gi|228849978|gb|EEM94809.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 200]
          Length = 362

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQIHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|152976230|ref|YP_001375747.1| radical SAM protein [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|205829663|sp|A7GRJ4|RLMN_BACCN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|152024982|gb|ABS22752.1| radical SAM enzyme, Cfr family [Bacillus cytotoxicus NVH 391-98]
          Length = 362

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 209/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E++E L + G P    + R  QI+ W+Y + +++++ M+++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQEWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMTNLSKGLREKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TNERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D++   L I +   G++   R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDHLMSFLRIVNHEKGINIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + +LR+ L+PINR Y L  L++A ++Y   +  RR+TFEY +  G ND    A  L 
Sbjct: 232 HAPNTELRSKLMPINRAYKLPDLMEAIKYYINRT-GRRVTFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 QLLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKNRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|165872311|ref|ZP_02216948.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0488]
 gi|227813228|ref|YP_002813237.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           CDC 684]
 gi|254751039|ref|ZP_05203078.1| hypothetical protein BantV_01167 [Bacillus anthracis str. Vollum]
 gi|254807150|sp|C3L763|RLMN_BACAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|164711987|gb|EDR17527.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0488]
 gi|227006974|gb|ACP16717.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           CDC 684]
          Length = 362

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLHTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDESE--------------ERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|158320465|ref|YP_001512972.1| radical SAM protein [Alkaliphilus oremlandii OhILAs]
 gi|205829712|sp|A8MH89|RLMN_ALKOO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|158140664|gb|ABW18976.1| radical SAM enzyme, Cfr family [Alkaliphilus oremlandii OhILAs]
          Length = 343

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 135/365 (36%), Positives = 202/365 (55%), Gaps = 30/365 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  L+ +  +E+EE L  +G      + R  QI++W+  +G++ F  M+++S+ +R  
Sbjct: 1   MEKIDLLSLTLKEIEEILTNMG----EKKFRGKQIFQWVN-KGVKTFDEMTNLSKNLRDQ 55

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L +   I   +I  + IS  DGT K+L       I     IE V +      T C+S+QV
Sbjct: 56  LAERTYITNIKIEKKLISSIDGTIKYLFLLEDCNI-----IEGVVMKYHHGLTACISTQV 110

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C+FC +    LVRNL A E++ Q+L  +                    G +ISNI
Sbjct: 111 GCAMGCTFCASTLDGLVRNLRAGEMIDQILTMQE-----------------DTGERISNI 153

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V+MG GEPL N+D     L I +D  GL+   R ITLSTSG VP I  + + +I + LAI
Sbjct: 154 VLMGSGEPLHNYDETINFLKIINDENGLNIGNRHITLSTSGLVPQIKTLADLKIPINLAI 213

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +++LR   +P+ +KY ++ LID+CR+Y      RRITFEY ++KG+ND  +DA  
Sbjct: 214 SLHAPNDELRQQTMPVAKKYAIDELIDSCRYYIE-KTGRRITFEYALIKGVNDRDKDARE 272

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LKG+   +NLIP N      Y     + I  F   +K++G  + +R   G DI AA
Sbjct: 273 LGDLLKGMLCHVNLIPVNNVDERGYKKPSIESIHQFQNTLKKAGIETTVRREMGADINAA 332

Query: 362 CGQLK 366
           CGQL+
Sbjct: 333 CGQLR 337


>gi|49481621|ref|YP_037925.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|81395090|sp|Q6HEV1|RLMN_BACHK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|49333177|gb|AAT63823.1| conserved hypothetical protein, radical SAM family [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 362

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKTSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDESE--------------ERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|196228869|ref|ZP_03127735.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
 gi|196227150|gb|EDY21654.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
          Length = 359

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 193/361 (53%), Gaps = 36/361 (9%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +E+ E L  +G P      R  Q+ +WIY + ++ F  MSD+   +R  L    S    E
Sbjct: 16  DEVSERLRTLGQPG----YRAKQVVQWIYGKRVKSFAEMSDLPAGLRQQLAAELSFSGLE 71

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--------SRGTLCVSSQVGCSL 126
            V    S D T K+L R     +     IE+V IP           R T+C+S+QVGC+ 
Sbjct: 72  PVRTLGSKDTTLKYLFRLDDGAL-----IESVLIPASPALYGEASDRRTICISTQVGCAY 126

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +G     RNL   EI+ QVL    L G+                 KI+NIV MG
Sbjct: 127 GCKFCASGLDGWSRNLQPGEIVDQVLRVEELSGE-----------------KINNIVFMG 169

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEP+ NF N+ K+++I +   G+    R IT+STSG  P I  + ++ + V LAISLH 
Sbjct: 170 MGEPMANFTNLMKAITIINAPWGIGLGARHITISTSGLAPQIKLLADQPLQVRLAISLHG 229

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N++R  ++P+NRKYPLE+L++AC +Y      + +TFEY++++ +ND P DA  L+K+
Sbjct: 230 ATNEVREQIMPVNRKYPLEVLLEACAYYTQ-RKKQWLTFEYILIEEVNDRPEDAAALVKV 288

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            + + AK+N IP+N   G ++    +     F   ++     + IR  +G DI AACGQL
Sbjct: 289 ARQVKAKVNCIPYNKVEGLDWTRPSEARQDAFMAVLEAGRIPATIRREKGHDIAAACGQL 348

Query: 366 K 366
           +
Sbjct: 349 R 349


>gi|305664559|ref|YP_003860846.1| radical SAM enzyme, Cfr family protein [Maribacter sp. HTCC2170]
 gi|88708576|gb|EAR00812.1| radical SAM enzyme, Cfr family protein [Maribacter sp. HTCC2170]
          Length = 348

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 207/368 (56%), Gaps = 26/368 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KK+ +  +  ++L E  +  G        R +Q+++W++ +    F+ M++IS+E R L
Sbjct: 5   IKKKDIRALTLDQLREFFVANGDKA----FRGNQVYEWLWKKSAYSFEVMTNISKETRTL 60

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F I + ++   + S DGT K  +R     +     +E+V IP K+R T CVSSQVG
Sbjct: 61  LTSNFVINHIKVDQMQRSKDGTIKNAVRLHDDLV-----VESVLIPTKTRTTACVSSQVG 115

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL C FC T   K +RNL  +EI  QV+              I+        R +SNIV
Sbjct: 116 CSLDCKFCATARLKRMRNLNPDEIFDQVVA-------------IDNESRLYFNRPLSNIV 162

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAI 241
            MGMGEPL N++NV K++   +   GL  S +RIT+STSG VP + R    E++   LA+
Sbjct: 163 FMGMGEPLMNYNNVLKAIDKITSPDGLGMSPKRITVSTSG-VPKMIRKMADEQVKFKLAV 221

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+  +++R  ++P N    L  L +A +++   + +R IT+EYV+ KGIND+  DA  
Sbjct: 222 SLHSAIDEIRTSIMPFNATLTLADLREALQYWYSKTKSR-ITYEYVVWKGINDTLNDAEA 280

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+   +  P+K+NLI +NP    ++  ++ K I  + + ++R G +  +R  RG DI AA
Sbjct: 281 LVDFCRFAPSKVNLIEYNPIDDGDFQQANNKAIDMYVDTLERRGITVTVRRSRGKDIDAA 340

Query: 362 CGQLKSLS 369
           CGQL + S
Sbjct: 341 CGQLANKS 348


>gi|229134672|ref|ZP_04263481.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST196]
 gi|228648718|gb|EEL04744.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST196]
          Length = 362

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 207/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++++ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLAKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   G+    R +T+STSG VP I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAANTEIRSKLMPINRAYKLPDLMEAVKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|188590485|ref|YP_001920564.1| radical SAM enzyme, Cfr family [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251777897|ref|ZP_04820817.1| radical SAM enzyme, Cfr family [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|205829736|sp|B2V4B5|RLMN_CLOBA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|188500766|gb|ACD53902.1| radical SAM enzyme, Cfr family [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243082212|gb|EES48102.1| radical SAM enzyme, Cfr family [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 347

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 191/336 (56%), Gaps = 26/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91
            R  QI  WIY + +R+F  M ++ + +   L ++F I  PEI +  K   DGT K+L +
Sbjct: 24  FRAKQIMSWIY-KDVRNFSDMRNMPKSLIAKLEENFEISLPEIEEIYKSELDGTEKFLFK 82

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
           F    +     IE+V +  K   ++C+S+Q+GC + C FC +     +RNLT  EIL Q+
Sbjct: 83  FSDGNL-----IESVLMRYKHGNSICISTQIGCRMGCKFCASTIDGRIRNLTTGEILSQI 137

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L+ ++ +G+                 +ISN+V+MG GEPL N++NV K L + S   GL+
Sbjct: 138 LVVQNYIGE-----------------RISNVVLMGSGEPLDNYENVMKFLEVVSAEYGLN 180

Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
             +R ITLST G VP I  + + E+ + LAISLHA S++ R  ++PI  KY ++ +++AC
Sbjct: 181 IGQRHITLSTCGIVPKIYELADKELSITLAISLHAFSDEKRKEIMPIANKYSIDEILNAC 240

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           +++      RRITFEY ++K +NDS  DA  L K+LKG+   +NLIP N      +  S 
Sbjct: 241 KYFIN-KTKRRITFEYSLVKDVNDSKEDARALGKLLKGMLCHVNLIPVNEIKERTFKRSS 299

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           ++ I  F+  +   G    +R   G DI AACGQL+
Sbjct: 300 KETIQDFANILSNLGIEVTVRREMGSDINAACGQLR 335


>gi|163941602|ref|YP_001646486.1| radical SAM protein [Bacillus weihenstephanensis KBAB4]
 gi|229013048|ref|ZP_04170213.1| Radical SAM family enzyme [Bacillus mycoides DSM 2048]
 gi|229061467|ref|ZP_04198812.1| Radical SAM family enzyme [Bacillus cereus AH603]
 gi|229168604|ref|ZP_04296327.1| Radical SAM family enzyme [Bacillus cereus AH621]
 gi|205829666|sp|A9VTA2|RLMN_BACWK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|163863799|gb|ABY44858.1| radical SAM enzyme, Cfr family [Bacillus weihenstephanensis KBAB4]
 gi|228615010|gb|EEK72112.1| Radical SAM family enzyme [Bacillus cereus AH621]
 gi|228717890|gb|EEL69538.1| Radical SAM family enzyme [Bacillus cereus AH603]
 gi|228748302|gb|EEL98162.1| Radical SAM family enzyme [Bacillus mycoides DSM 2048]
          Length = 362

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 207/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++++ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLAKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   G+    R +T+STSG VP I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAANTEIRSKLMPINRAYKLPDLMEAVKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|228922618|ref|ZP_04085918.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228954141|ref|ZP_04116169.1| Radical SAM family enzyme [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229071362|ref|ZP_04204585.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           F65185]
 gi|229081119|ref|ZP_04213629.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock4-2]
 gi|229180140|ref|ZP_04307484.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           172560W]
 gi|229192033|ref|ZP_04319003.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           ATCC 10876]
 gi|228591584|gb|EEK49433.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           ATCC 10876]
 gi|228603349|gb|EEK60826.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           172560W]
 gi|228702163|gb|EEL54639.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock4-2]
 gi|228711816|gb|EEL63768.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           F65185]
 gi|228805461|gb|EEM52052.1| Radical SAM family enzyme [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228837047|gb|EEM82388.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 362

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|332886413|gb|EGK06657.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas
           mossii DSM 22836]
          Length = 341

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 195/370 (52%), Gaps = 29/370 (7%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  E+    + + G+P    R    QI  W+Y + I     M+++S   R LL++ + I 
Sbjct: 1   MTMEDFYGVVGECGLP----RFSAKQIADWVYKKRITSIDEMTNLSVANRALLSEKYDIG 56

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
               ++ + S DGT K+L +     +     IE V IPE  R TLCVSSQVGC + C FC
Sbjct: 57  RYNPLEFQQSVDGTVKYLFKTEKEKL-----IEAVMIPEDDRATLCVSSQVGCKMNCLFC 111

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG Q    NLTA EIL Q+   R                       ++N+V MGMGEPL
Sbjct: 112 MTGKQGFNGNLTANEILNQLYSVRE-------------------AESLTNVVFMGMGEPL 152

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251
            N++ +KK+L I +   G+++S +RIT+ST+G  P + R  +E    LAIS+H+   + R
Sbjct: 153 DNYEELKKTLEIMTADYGMAWSPKRITVSTTGVTPKLKRFLDESNAHLAISIHSPEKEQR 212

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             ++P  + +P+  ++D  R Y   +  RR++FEY+M    NDS   A  L ++L+G+  
Sbjct: 213 LSIMPAEKAFPITGVMDLLRQYD-WTKQRRLSFEYIMFDNFNDSLIHAKELTQMLRGVEC 271

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           ++NLI F+  P  +   S ++ +  F + + + G +S IR  RG DI AACG L ++   
Sbjct: 272 RVNLIRFHAIPNVDLKTSTKEKMEAFRDYLTKKGVTSTIRASRGEDIFAACGMLSTMKGD 331

Query: 372 IPKVPRQEMQ 381
                +++++
Sbjct: 332 ALSASKKDLE 341


>gi|257438998|ref|ZP_05614753.1| radical SAM enzyme, Cfr family [Faecalibacterium prausnitzii
           A2-165]
 gi|257198583|gb|EEU96867.1| radical SAM enzyme, Cfr family [Faecalibacterium prausnitzii
           A2-165]
          Length = 346

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 128/364 (35%), Positives = 202/364 (55%), Gaps = 30/364 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  +  +   EL  AL  +G P      R  QI+ W++ + + +F  M+D  + +   L
Sbjct: 3   QKRCISSLTLAELTAALKAMGQPG----FRAKQIFHWVHQKLVTEFSAMTDQPKTLLAKL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            + F I  P+I   + + DGT K+LLR     CI      ETV +      T+CVS+QVG
Sbjct: 59  EEQFYIAAPKIERRQEAKDGTVKYLLRMADGNCI------ETVVMRYHYGNTVCVSTQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +     VRNL A EI  ++  A+                   +G +IS+IV
Sbjct: 113 CRMGCRFCASTQAGRVRNLEAGEICSEIYTAQK-----------------DIGERISHIV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEPL NFD V + L   S   G++   R I+LST G VP I ++ E+ + + L++S
Sbjct: 156 LMGIGEPLDNFDEVMRFLENISSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSVS 215

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R+ ++P+N  YP+E+L+ A R Y   +  RR++FEY M++G+NDS   A  L
Sbjct: 216 LHAPNNEIRSGMMPVNDAYPVEVLMPAVRRYQE-TTGRRVSFEYSMVRGVNDSDACARQL 274

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +++G+ A +NLIP NP  G  Y  +D  ++  F + ++  G ++ +R   G +I AAC
Sbjct: 275 ADLIRGMGAHVNLIPINPVDGSPYSATDAANVQRFQKKLESLGVNATVRRRLGSEISAAC 334

Query: 363 GQLK 366
           GQL+
Sbjct: 335 GQLR 338


>gi|52080178|ref|YP_078969.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           licheniformis ATCC 14580]
 gi|52785555|ref|YP_091384.1| YloN [Bacillus licheniformis ATCC 14580]
 gi|319646042|ref|ZP_08000272.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp.
           BT1B_CT2]
 gi|81385601|sp|Q65JS3|RLMN_BACLD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|52003389|gb|AAU23331.1| Conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
 gi|52348057|gb|AAU40691.1| YloN [Bacillus licheniformis ATCC 14580]
 gi|317391792|gb|EFV72589.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp.
           BT1B_CT2]
          Length = 361

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 192/340 (56%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y + +  F+ M+++S+E+R  LN+HF +   +   ++ S DGT K+L   
Sbjct: 38  FRAAQIFEWLYEKRVTSFEKMTNLSKELRTKLNEHFVLTTLKTAVKQTSQDGTMKFLFE- 96

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +  +   ++CV++QVGC + C+FC +    L RNL A EI+ QV+
Sbjct: 97  ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 152

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S+IV+MG+GEP  NF  +   L I +   GL+ 
Sbjct: 153 KVQQALDE--------------TDERVSSIVIMGIGEPFDNFQEMLAFLKIVNHDKGLNI 198

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I    +E + +  AISLHA + ++R+ L+PINR Y L  L+ A  
Sbjct: 199 GARHITVSTSGIIPKIYEFADEKLQINFAISLHAPNTEIRSRLMPINRAYKLPDLMKAVD 258

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RR+TFEY +  G+ND    A  L ++LKGI   +NLIP N  P  +Y+ + +
Sbjct: 259 YYIK-KTGRRVTFEYGLFGGVNDQVEHAEELAELLKGIKCHVNLIPVNYVPERDYVRTPK 317

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           + I  F + +K  G +  IR  +G DI AACGQL++  ++
Sbjct: 318 EQIFAFEKTLKSHGVNVTIRREQGHDIDAACGQLRAKERQ 357


>gi|212639614|ref|YP_002316134.1| ribosomal RNA large subunit methyltransferase N [Anoxybacillus
           flavithermus WK1]
 gi|212561094|gb|ACJ34149.1| Predicted Fe-S-cluster redox enzyme [Anoxybacillus flavithermus
           WK1]
          Length = 349

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 192/340 (56%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y +    F+ M++I + +R  L +HF I   + + ++ S DGT K+L   
Sbjct: 25  FRATQIFEWLYKKRATSFEDMTNIPKALRERLAEHFVITTLKTLVQQTSKDGTMKFLFE- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +      ++CV++QVGC + C+FC +    L RNL A EI+ QV+
Sbjct: 84  ----LHDGYSIETVLMRHDYGNSICVTTQVGCRIGCTFCASTLGGLKRNLQAGEIVAQVV 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S+IV+MG+GEP  N+D + K L I +   GL  
Sbjct: 140 KVQKALDE--------------TNERVSSIVVMGIGEPFDNYDELIKFLKIVNHPKGLHI 185

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I +  +E + +  AISLHA + +LR+ L+PINR Y L  L++A R
Sbjct: 186 GARHITVSTSGIIPKIYQFADENMQINFAISLHAPNTELRSKLMPINRAYKLPELMEAVR 245

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RR+TFEY +  G+ND    A  L +++KG+   +NLIP N  P   Y+ + +
Sbjct: 246 YYIE-KTGRRVTFEYGLFGGVNDQIEHAEELAELIKGLKCHVNLIPVNYVPERNYVRTPR 304

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           + I  F + +K+ G +  IR  +G DI AACGQL++  ++
Sbjct: 305 EQIFAFEKTLKKHGINVTIRREQGHDIDAACGQLRAKERK 344


>gi|283782458|ref|YP_003373213.1| radical SAM enzyme, Cfr family [Pirellula staleyi DSM 6068]
 gi|283440911|gb|ADB19353.1| radical SAM enzyme, Cfr family [Pirellula staleyi DSM 6068]
          Length = 391

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 203/370 (54%), Gaps = 31/370 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           EL+  L + G P      R +Q+ KW++  G   F  M+D+ +++R  L   F++   ++
Sbjct: 45  ELKTWLTERGYPA----YRATQVRKWVFELGASSFDEMTDLPKKLRDELAPEFTLWTGKV 100

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
           V +  S DGT K L+ +P    GG   IE V + +  R ++CVSSQVGC++ C FC +G 
Sbjct: 101 VTKSESPDGTEKLLVEYPG---GG--RIECVLLRDGDRRSICVSSQVGCAMGCVFCASGL 155

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             + RNLTA EI+ Q+LL + LL +                 ++S+IVMMGMGEPL N D
Sbjct: 156 DGVDRNLTAGEIVEQMLLLQRLLPE---------------KERLSHIVMMGMGEPLANID 200

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNIL 254
           +V ++L  A+   GL  S RRIT+ST G    + ++   E    LA+SLHA +N+LR  L
Sbjct: 201 HVLEALGEATREDGLGISPRRITISTVGLPAALDKLCNLEAKYHLAVSLHAPNNELRTRL 260

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
           VPIN+   +E +I++   Y   S  RR+TFEYV+L G+ND P  A  L ++L G  A +N
Sbjct: 261 VPINKAIGIEKVIESADRYFETS-GRRLTFEYVLLAGVNDHPDHAQELAELLAGRTAMLN 319

Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS-----LS 369
           +IP+NP  G  Y       I  F   +  +G +   R  +G +I AACGQL+      L 
Sbjct: 320 VIPYNPVAGLPYKTPSGNAIHRFRNILVDAGINVKFRQRKGSEINAACGQLRRSTPTLLG 379

Query: 370 KRIPKVPRQE 379
              P  P QE
Sbjct: 380 IESPAPPSQE 389


>gi|229174530|ref|ZP_04302062.1| Radical SAM family enzyme [Bacillus cereus MM3]
 gi|228609090|gb|EEK66380.1| Radical SAM family enzyme [Bacillus cereus MM3]
          Length = 362

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + ++++  MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYDDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   G+    R +T+STSG VP I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+ + +LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HSANTELRSKLMPINRAYKLPDLMEAVKYYVNRT-GRRITFEYGLFGGENDQVEQAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|30263867|ref|NP_846244.1| hypothetical protein BA_4002 [Bacillus anthracis str. Ames]
 gi|42782956|ref|NP_980203.1| hypothetical protein BCE_3906 [Bacillus cereus ATCC 10987]
 gi|47529293|ref|YP_020642.1| hypothetical protein GBAA_4002 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186714|ref|YP_029966.1| ribosomal RNA large subunit methyltransferase N [Bacillus anthracis
           str. Sterne]
 gi|52141624|ref|YP_085205.1| hypothetical protein BCZK3623 [Bacillus cereus E33L]
 gi|65321191|ref|ZP_00394150.1| COG0820: Predicted Fe-S-cluster redox enzyme [Bacillus anthracis
           str. A2012]
 gi|118479086|ref|YP_896237.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           thuringiensis str. Al Hakam]
 gi|167636419|ref|ZP_02394718.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0442]
 gi|167641154|ref|ZP_02399409.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0193]
 gi|170688817|ref|ZP_02880020.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0465]
 gi|170708820|ref|ZP_02899256.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0389]
 gi|190565819|ref|ZP_03018738.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis
           Tsiankovskii-I]
 gi|196035941|ref|ZP_03103343.1| conserved hypothetical protein TIGR00048 [Bacillus cereus W]
 gi|196038756|ref|ZP_03106064.1| conserved hypothetical protein TIGR00048 [Bacillus cereus
           NVH0597-99]
 gi|196047439|ref|ZP_03114651.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB108]
 gi|206976736|ref|ZP_03237640.1| conserved hypothetical protein TIGR00048 [Bacillus cereus H3081.97]
 gi|217961284|ref|YP_002339852.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH187]
 gi|218904994|ref|YP_002452828.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH820]
 gi|222097309|ref|YP_002531366.1| ribosomal RNA large subunit methyltransferase n [Bacillus cereus
           Q1]
 gi|225865845|ref|YP_002751223.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB102]
 gi|228916501|ref|ZP_04080067.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928912|ref|ZP_04091944.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935178|ref|ZP_04098005.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947583|ref|ZP_04109873.1| Radical SAM family enzyme [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228987007|ref|ZP_04147133.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229092907|ref|ZP_04224041.1| Radical SAM family enzyme [Bacillus cereus Rock3-42]
 gi|229123378|ref|ZP_04252582.1| Radical SAM family enzyme [Bacillus cereus 95/8201]
 gi|229140510|ref|ZP_04269065.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST26]
 gi|229157440|ref|ZP_04285518.1| Radical SAM family enzyme [Bacillus cereus ATCC 4342]
 gi|229186104|ref|ZP_04313273.1| Radical SAM family enzyme [Bacillus cereus BGSC 6E1]
 gi|229197975|ref|ZP_04324689.1| Radical SAM family enzyme [Bacillus cereus m1293]
 gi|229603263|ref|YP_002868101.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0248]
 gi|254683427|ref|ZP_05147287.1| hypothetical protein BantC_06200 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721396|ref|ZP_05183185.1| hypothetical protein BantA1_02905 [Bacillus anthracis str. A1055]
 gi|254735903|ref|ZP_05193609.1| hypothetical protein BantWNA_12161 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254739849|ref|ZP_05197542.1| hypothetical protein BantKB_02319 [Bacillus anthracis str. Kruger
           B]
 gi|254756704|ref|ZP_05208733.1| hypothetical protein BantA9_00135 [Bacillus anthracis str.
           Australia 94]
 gi|301055355|ref|YP_003793566.1| radical SAM enzyme [Bacillus anthracis CI]
 gi|81409444|sp|Q732K6|RLMN_BACC1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81686555|sp|Q636G2|RLMN_BACCZ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81715534|sp|Q81WH4|RLMN_BACAN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829662|sp|A0RHN7|RLMN_BACAH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807149|sp|C3P635|RLMN_BACAA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807151|sp|B7JJV1|RLMN_BACC0 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807153|sp|C1EP88|RLMN_BACC3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807155|sp|B7HLJ7|RLMN_BACC7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807156|sp|B9IVF3|RLMN_BACCQ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|30258511|gb|AAP27730.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           Ames]
 gi|42738883|gb|AAS42811.1| conserved hypothetical protein TIGR00048 [Bacillus cereus ATCC
           10987]
 gi|47504441|gb|AAT33117.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49180641|gb|AAT56017.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           Sterne]
 gi|51975093|gb|AAU16643.1| conserved hypothetical protein; radical SAM family [Bacillus cereus
           E33L]
 gi|118418311|gb|ABK86730.1| 23S rRNA m(2)A-2503 methyltransferase [Bacillus thuringiensis str.
           Al Hakam]
 gi|167510934|gb|EDR86325.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0193]
 gi|167528161|gb|EDR90948.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0442]
 gi|170126305|gb|EDS95196.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0389]
 gi|170667172|gb|EDT17932.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0465]
 gi|190562738|gb|EDV16704.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991590|gb|EDX55556.1| conserved hypothetical protein TIGR00048 [Bacillus cereus W]
 gi|196021747|gb|EDX60442.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB108]
 gi|196030479|gb|EDX69078.1| conserved hypothetical protein TIGR00048 [Bacillus cereus
           NVH0597-99]
 gi|206745046|gb|EDZ56449.1| conserved hypothetical protein TIGR00048 [Bacillus cereus H3081.97]
 gi|217063048|gb|ACJ77298.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH187]
 gi|218536040|gb|ACK88438.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH820]
 gi|221241367|gb|ACM14077.1| conserved hypothetical protein [Bacillus cereus Q1]
 gi|225788055|gb|ACO28272.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB102]
 gi|228585454|gb|EEK43558.1| Radical SAM family enzyme [Bacillus cereus m1293]
 gi|228597280|gb|EEK54931.1| Radical SAM family enzyme [Bacillus cereus BGSC 6E1]
 gi|228626167|gb|EEK82916.1| Radical SAM family enzyme [Bacillus cereus ATCC 4342]
 gi|228643071|gb|EEK99347.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST26]
 gi|228660154|gb|EEL15790.1| Radical SAM family enzyme [Bacillus cereus 95/8201]
 gi|228690529|gb|EEL44312.1| Radical SAM family enzyme [Bacillus cereus Rock3-42]
 gi|228772785|gb|EEM21225.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228812103|gb|EEM58434.1| Radical SAM family enzyme [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228824543|gb|EEM70348.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830719|gb|EEM76324.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843080|gb|EEM88162.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229267671|gb|ACQ49308.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0248]
 gi|300377524|gb|ADK06428.1| radical SAM enzyme [Bacillus cereus biovar anthracis str. CI]
 gi|324327762|gb|ADY23022.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 362

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDESE--------------ERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|296504359|ref|YP_003666059.1| radical SAM protein [Bacillus thuringiensis BMB171]
 gi|296325411|gb|ADH08339.1| radical SAM protein [Bacillus thuringiensis BMB171]
          Length = 362

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 209/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAVQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I   + + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLKTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|317050952|ref|YP_004112068.1| radical SAM enzyme, Cfr family [Desulfurispirillum indicum S5]
 gi|316946036|gb|ADU65512.1| radical SAM enzyme, Cfr family [Desulfurispirillum indicum S5]
          Length = 342

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 126/359 (35%), Positives = 193/359 (53%), Gaps = 31/359 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           ++++     +G P    + R  Q   W+Y +G  D    +++S+E+R LL +  +I +P 
Sbjct: 10  QQVQRLFADLGQP----KFRVDQFLAWVYAKGCLDMDAYTNVSKELRSLLRE--TIHFPR 63

Query: 75  IVDEKIS---CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
              E +     D TRK LLRFP         +ETV IP  S+ + C+S+QVGC + C+FC
Sbjct: 64  YTIESVQHSRVDNTRKILLRFP-----DGHAVETVLIPVHSKLSQCLSTQVGCKMGCTFC 118

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            T +    RNL+  EIL Q   AR ++                   ++ N V MGMGEPL
Sbjct: 119 ATASMGFKRNLSVSEILAQAFAAREII---------------EPHERVGNFVFMGMGEPL 163

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDL 250
            N++N   ++        + +S R +TLST G +  I R+  EE+   LAISLHAV+++ 
Sbjct: 164 DNYENSIAAIKTIIHPQMMGYSHRHVTLSTCGILKGIRRLSREELPCNLAISLHAVNDEQ 223

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R+ L+P+NR   L  L+   R +P LS+ + IT EY++++  NDS  DA  L+++L+G+ 
Sbjct: 224 RSFLMPVNRADGLHALMQTLREFP-LSSKKVITIEYLLIRDFNDSTDDAKKLLQLLRGLR 282

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
            K+NLI +NP    +Y   D+K ++ F   +   G  + IR   G DI AACGQL   S
Sbjct: 283 CKVNLIVYNPHDYADYHAPDEKRVLQFQRILAEKGVMTFIRKSGGSDIDAACGQLAGKS 341


>gi|148270145|ref|YP_001244605.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
           petrophila RKU-1]
 gi|281412513|ref|YP_003346592.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10]
 gi|205829917|sp|A5ILF6|RLMN_THEP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|147735689|gb|ABQ47029.1| radical SAM enzyme, Cfr family [Thermotoga petrophila RKU-1]
 gi|281373616|gb|ADA67178.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10]
          Length = 343

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 206/363 (56%), Gaps = 32/363 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+ +  EEL   +  +G+     R R  QI  WI+ + + +F  M+++S++ R LL +
Sbjct: 2   KNLLDLSYEELITEITNLGLE----RYRADQILDWIFNKKVNNFDEMTNLSKKHRALLKE 57

Query: 67  HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           HFSI + +++D+K+S  DGT K+L        G  +E   ++ P+  R T C+S+QVGC 
Sbjct: 58  HFSIPFLKLLDKKVSRIDGTTKFLWELED---GNTIESVMLFHPD--RITACISTQVGCP 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG    VRNLT  EI+ Q+L            E  E        +KI N+V M
Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQIL----------SMEKEE-------KKKIGNVVYM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N++N  KS+   +     +   RRIT+ST G    I ++ EE + V LA+SLH
Sbjct: 156 GMGEPLLNYENTIKSIRTLNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N  R+ LVP+N+KY +E +++A + Y       R+T EYV++KG+ND   DA  L +
Sbjct: 216 APTNFKRDQLVPLNKKYSIEEILNAVKIYQK-KTGNRVTIEYVLIKGMNDEISDAKKLAE 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKD-IVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ILK +   +NLIP N  P  E L    ++ ++TF   +  SG  + IR  +G DI AACG
Sbjct: 275 ILKNMKVFVNLIPVN--PTVEDLKKPSRERLLTFKRILLESGIEAEIRREKGADIEAACG 332

Query: 364 QLK 366
           QL+
Sbjct: 333 QLR 335


>gi|317495216|ref|ZP_07953586.1| cfr family radical SAM enzyme [Gemella moribillum M424]
 gi|316914638|gb|EFV36114.1| cfr family radical SAM enzyme [Gemella moribillum M424]
          Length = 377

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 203/369 (55%), Gaps = 25/369 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
            +K S+  +  ++LEE L+ IG      + R  QI+ W+Y + I  F  M ++ + ++  
Sbjct: 18  FEKMSIYSIRLDQLEEYLVSIG----EKKFRAKQIYDWLYKKRITSFTEMKNVPKSLQEK 73

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L + F I     + ++ S DGT K+L     +       IE+V +  K   +LCV++QVG
Sbjct: 74  LAEEFEITTLNTIIKQESIDGTMKFLFELQDKYT-----IESVLMKNKYGNSLCVTTQVG 128

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L RNL A EI+ QVL  +  L                 G +IS+IV
Sbjct: 129 CRIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQEL--------------DKRGERISSIV 174

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEP  N+D +   + I +     +   R IT+STSG VP I     E+I +  A+S
Sbjct: 175 IMGIGEPFENYDEMMDFIKIVNSDESFNIGARHITVSTSGIVPKIYDFANEKIQINFAVS 234

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++P+NR Y ++ L++A ++Y   +N RRITFEY ++  +ND    A  L
Sbjct: 235 LHAPTNELRSKIMPVNRAYNIDKLMEALKYYQKTTN-RRITFEYGLMGKVNDQREHAEKL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +I+K +   +NLIP N  P   Y+ + + DI  F + +K++  +  IR  +G DI AAC
Sbjct: 294 SEIIKDLNCHVNLIPINYVPERNYVRTSKNDIFAFEKVLKKNRVNVTIRRTQGDDIDAAC 353

Query: 363 GQLKSLSKR 371
           GQL++  ++
Sbjct: 354 GQLRAKERK 362


>gi|218282588|ref|ZP_03488826.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989]
 gi|218216459|gb|EEC89997.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989]
          Length = 336

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 122/334 (36%), Positives = 193/334 (57%), Gaps = 21/334 (6%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  QI++W+Y   + D   M+++S+E R +L + F +   E++ +++S DGT K+L +  
Sbjct: 14  RGHQIFQWLYRNRVFDIDEMTNVSKETREILKKDFIVNPLELIKKQVSHDGTTKFLFKTS 73

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              +     +E+V +      ++CVSSQVGC++ C+FC +G  K  R+LT+ E++ QV+ 
Sbjct: 74  DGAL-----LESVMMVFDYGRSVCVSSQVGCNMGCAFCASGLTKKKRDLTSGEMVAQVMY 128

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
            +  L       D + +       ++S+IV+MG GEP  N+DNV   L+  +   GL   
Sbjct: 129 VQKEL-------DKDNL-------RLSHIVVMGTGEPFDNYDNVMNFLATVNHDRGLGIG 174

Query: 214 KRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            R IT+ST G VP I     E     LAISLHA +++LR+ L+P+N  YPL+ L++A ++
Sbjct: 175 SRHITISTCGIVPRIYDFANEHTQYNLAISLHAPNDELRDQLMPVNHAYPLKELMEAIQY 234

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y G  N RR+TFEY++LKG+ND P  A  L K+L G+ A +NLIP+N      +      
Sbjct: 235 Y-GKENNRRLTFEYILLKGVNDHPEHAKQLSKLLHGMNAYVNLIPYNAVDEKGFKSVTHD 293

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + + F + + ++     IR   G DI AACGQL+
Sbjct: 294 EAMVFYDLLMKNYVRCTIRKEHGNDIDAACGQLR 327


>gi|288554554|ref|YP_003426489.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           pseudofirmus OF4]
 gi|288545714|gb|ADC49597.1| ribosomal RNA methyltransferase N, heat shock prot [Bacillus
           pseudofirmus OF4]
          Length = 360

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 216/370 (58%), Gaps = 32/370 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + KES+ G+  ++L E L++ G    H + R +Q+W W+Y + ++ F  M++++++   L
Sbjct: 1   MHKESIYGLTMDQLTEWLMERG----HKKFRATQVWDWLYRKRVKSFDEMNNVNKDCLEL 56

Query: 64  LNQHFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L ++F I    E V ++ S DGT K+L +     +     IETV +  K   ++CV++QV
Sbjct: 57  LRENFVISTLTEHVKQE-SSDGTIKFLFKLYDGNL-----IETVLMKHKYGLSVCVTTQV 110

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR--KIS 180
           GC++ CSFC +G  K  R+L++ EI+ Q++  +  L               SVG+  ++S
Sbjct: 111 GCNIGCSFCASGLLKKSRDLSSGEIVEQIMNVQHHL--------------DSVGKDERVS 156

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           +IV+MG+GEP  NFDN+   L I  D  GL+   R IT+STSG    I    + ++ V L
Sbjct: 157 HIVVMGIGEPFDNFDNMVDFLEIMKDHKGLAIGARHITVSTSGLADKIYEFADLKLQVNL 216

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           AISLHA +N+LR  ++ IN+  P+E L+ A  +Y   +N R+IT EY++LKG+ND    A
Sbjct: 217 AISLHAPNNELRTKIMKINKAIPIEKLMKAIDYYLEKTN-RKITIEYILLKGVNDQREHA 275

Query: 300 LNLIKILKGIP--AKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L ++ K       +NLIP+NP     +Y  S ++DI+ F + +K++G +  +R   G 
Sbjct: 276 KELAEMFKDKRHLTYVNLIPYNPVDEHGQYQRSIKEDILGFYDELKKNGINCGVRLEHGT 335

Query: 357 DILAACGQLK 366
           DI AACGQL+
Sbjct: 336 DIDAACGQLR 345


>gi|237650461|ref|ZP_04524713.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
           CCRI 1974]
 gi|237821909|ref|ZP_04597754.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
           CCRI 1974M2]
          Length = 361

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 TELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|150021379|ref|YP_001306733.1| ribosomal RNA large subunit methyltransferase N [Thermosipho
           melanesiensis BI429]
 gi|205829916|sp|A6LN47|RLMN_THEM4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|149793900|gb|ABR31348.1| radical SAM enzyme, Cfr family [Thermosipho melanesiensis BI429]
          Length = 340

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 208/365 (56%), Gaps = 36/365 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++ +  EEL     +IG+     + R  Q+  WIY + + +F+ M+++S+E R LL++
Sbjct: 2   KNILDLKYEELVNEFQRIGLE----KYRVDQVLNWIYKKKVFEFEKMTNLSKEHRKLLSE 57

Query: 67  HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F I  P+++D +IS  D T K+L        G    IE+V +    R T C+S+QVGC 
Sbjct: 58  KFFIDLPKLLDMQISKIDKTTKFLWELRD---GNT--IESVALFHSGRVTACISTQVGCP 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVL---LARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           + C FC TG    VRNLT  EI+ Q+L   L R +                    K+ N+
Sbjct: 113 VKCEFCATGQSGFVRNLTVGEIVSQILAIELNRKI--------------------KVGNV 152

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V MGMGEPL NF+NV  S+ + +D   L+   RRIT+ST G    I  + E  + V LA+
Sbjct: 153 VYMGMGEPLLNFENVIDSIKMLNDKKMLNIGIRRITVSTVGIPEKIIALAESGLNVKLAL 212

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV++  R+ ++P+N+KY +E LI + R Y  ++   R+T EY++++  ND P DA+ 
Sbjct: 213 SLHAVTDYKRDQIIPLNKKYSVEELIYSLRKYQEIT-GNRVTIEYILIREFNDYPEDAIR 271

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++L+G+   +NLIP NP    ++   ++  +  F E ++++G    IR  +G DI AA
Sbjct: 272 LVELLRGLSVYVNLIPINP-VNPKFHRPNRWALERFKEILEKNGIECEIRKEKGTDIDAA 330

Query: 362 CGQLK 366
           CGQL+
Sbjct: 331 CGQLR 335


>gi|257125946|ref|YP_003164060.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b]
 gi|257049885|gb|ACV39069.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b]
          Length = 372

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 199/366 (54%), Gaps = 26/366 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  ++GM  E L+   ++I    R  +   SQ++ W++ + + +F   S+IS++ R +
Sbjct: 20  VEKIDILGMDLESLQRKFVEI----RLKKFNASQVFDWLHNKLVFNFDEFSNISKKDREI 75

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L + F +   E    ++S DG T K+L     + +     IE+V I  K+R TLCVSSQ+
Sbjct: 76  LKEKFYVEKLEFKTHQVSEDGDTEKFLFELKDKRL-----IESVLISHKNRHTLCVSSQI 130

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC T T    RNL+  EILLQ    +  L                 G K+ N+
Sbjct: 131 GCLIGCDFCATATMTYERNLSISEILLQYYYVQKHL--------------LQRGEKLGNV 176

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEP  N+D V  S+++ +   G +FSKR  T+STSG V  I R  E E  + LAI
Sbjct: 177 VYMGMGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRFTENENQINLAI 236

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+V +D+RN ++PIN+++ ++ L ++   Y   +   RITFEY+++  +N  P DA  
Sbjct: 237 SLHSVKDDVRNEIMPINKRWGVKQLKESLLEYQKQT-KNRITFEYILINDLNCEPEDARE 295

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L   L      +NLIP+NP  G  Y    ++    F + +K    +  +R  +G DI AA
Sbjct: 296 LAGFLNSFSCLVNLIPYNPVGGKPYKTPSKQKQREFYKLLKDKNVNVTLRETKGQDIAAA 355

Query: 362 CGQLKS 367
           CGQLK+
Sbjct: 356 CGQLKA 361


>gi|237738438|ref|ZP_04568919.1| radical SAM domain-containing protein [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420318|gb|EEO35365.1| radical SAM domain-containing protein [Fusobacterium mortiferum
           ATCC 9817]
          Length = 356

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 214/376 (56%), Gaps = 32/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + ++ELEE ++ +G+ + + +    Q++ W++ + +RD   ++++S + R LL
Sbjct: 7   EKINLLNLNQQELEEFVVSLGMKKFYGK----QLFNWLHKKIVRDLNEVTNLSLKDRELL 62

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQV 122
            +   I +  ++  +IS  D T K+L +      G    IETV +  K  R TLC+SSQV
Sbjct: 63  TEKAYIPFLNLLKHQISKIDKTEKFLFQLED---GNT--IETVLLRHKDKRNTLCISSQV 117

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C+FC TG    VR+L   EI+ QV               IE  ++   G  ++NI
Sbjct: 118 GCAVKCAFCATGQGGFVRDLNVSEIINQVY-------------TIERRLVKQ-GTNLNNI 163

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241
           V MGMGEPL N  NV K+L I S+  G++ SKR+IT+STSG VPNI ++  E++ V LAI
Sbjct: 164 VFMGMGEPLLNLTNVLKALEILSNENGINISKRKITISTSGIVPNIEKILLEKVPVELAI 223

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+  N+ R+ ++PINR+YPLE L    + Y   +  RRITFEY+++   N S  DA  
Sbjct: 224 SLHSAINEKRDEIIPINRRYPLEDLHAVLQEYQRQT-KRRITFEYILINNFNVSEGDANA 282

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI---VTFSECIKRSGYSSPIRTPRGLDI 358
           L   +      +NLIP NP  G E      K I   V F + +++   +  IR  +G DI
Sbjct: 283 LADFVHDFDHVVNLIPCNPVEGTEMTRPSDKKIERFVNFLQNVRKVNVT--IRREKGTDI 340

Query: 359 LAACGQLKSLSKRIPK 374
             ACGQL+  +K+  K
Sbjct: 341 DGACGQLRQKNKKPTK 356


>gi|311748631|ref|ZP_07722416.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1]
 gi|126577157|gb|EAZ81405.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1]
          Length = 352

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 202/366 (55%), Gaps = 24/366 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  ++K  +  +  EELEE  L  G      + R  Q++ W++ + +++F  MS+IS E 
Sbjct: 1   MEEIQKSDVRKLSLEELEEFFLAHG----EKKFRAKQVYDWLWNKSLKNFDDMSNISLET 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R LL ++F I +  +   + S DGT K  ++     I     +E+V IP   R T CVSS
Sbjct: 57  RELLKKYFKINHILVDLMQHSSDGTIKNAVKLYDDKI-----VESVLIPTSKRITACVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL C+FC T   K +RNL  +EI  QV+  +         E+ E        R ++
Sbjct: 112 QVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIK---------EEAEKYF----ERPLT 158

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           NIV MGMGEPL N+ NV  ++   +   GL  + RRITLST G    I ++ + E+   L
Sbjct: 159 NIVFMGMGEPLLNYANVLAAIDKITSPEGLGMAARRITLSTVGVTKMIRKMADDEVKFNL 218

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+  N+ R+ L+PIN   P+E L ++ +++      R++T+EYV+  G+ND  R A
Sbjct: 219 AVSLHSAINETRSRLMPINDSNPVEELGESLKYWYK-KTGRKVTYEYVIWDGVNDDERHA 277

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L K  K IP+K+N+I +NP    E+  + Q+ +  +   ++  G  + +R  RG DI 
Sbjct: 278 RALAKFCKLIPSKVNIIQYNPIDEGEFRQAKQEAVDMYIRVLESQGVIAKVRKSRGQDID 337

Query: 360 AACGQL 365
           AACGQL
Sbjct: 338 AACGQL 343


>gi|159900818|ref|YP_001547065.1| ribosomal RNA large subunit methyltransferase N [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|205829775|sp|A9AY55|RLMN_HERA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|159893857|gb|ABX06937.1| radical SAM enzyme, Cfr family [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 363

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 202/358 (56%), Gaps = 21/358 (5%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           L   L ++G P      R  QI+  +Y +   DF  M+D+   +R  L  +  I   E+V
Sbjct: 11  LTAQLTELGQPA----FRARQIYAHLYKKLANDFAAMTDLPAALREQLTANLQIGSLELV 66

Query: 77  DEKISCDG-TRKWLLRFPARCIGGPVEIETV---YIPEKSRGTLCVSSQVGCSLTCSFCY 132
            E+ + DG TRK L R P     G   IETV   Y P+  R T+CVS+Q GC++ C FC 
Sbjct: 67  REQTTDDGLTRKVLWRCP-----GDAVIETVLMIYPPD--RATICVSTQAGCAMGCVFCA 119

Query: 133 TGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
           TG   L+RN+++ EI+ QVL   R L  +        G  +P     I+N+V MGMGEP 
Sbjct: 120 TGKLGLLRNISSGEIMEQVLYFERYLRNEGAAIAKRHGGPVPD---HITNLVFMGMGEPF 176

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDL 250
            N++    ++   +D  G +   R +T+ST G V  I ++ +E + V LA+SLHA ++ L
Sbjct: 177 ANYERWWAAVERLNDKQGFNLGARNMTVSTVGLVKGIRQLADEALQVNLAVSLHAPNDQL 236

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R+ L+P+N ++ +  L+DA R+Y   ++ RR++FEYV+L   ND+P  A  L  ++KG+ 
Sbjct: 237 RSELMPVNDRFDISDLMDAIRYYTDKTH-RRVSFEYVLLDDKNDTPELAAQLASLVKGML 295

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
             +NLIP+NP PG     S ++ +  F   ++ +G S  +R  RG++I AACGQL ++
Sbjct: 296 CHVNLIPWNPIPGTPLTRSHRERVTAFQRVVQAAGISCTVRVERGVEIAAACGQLAAI 353


>gi|260591531|ref|ZP_05856989.1| radical SAM enzyme, Cfr family [Prevotella veroralis F0319]
 gi|260536562|gb|EEX19179.1| radical SAM enzyme, Cfr family [Prevotella veroralis F0319]
          Length = 346

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 198/365 (54%), Gaps = 29/365 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+GM   EL+E    +G+P         Q+ KW+Y + ++    M++IS+  R  L 
Sbjct: 5   KKYLLGMTLGELKEVAKSLGMPA----FTGGQMAKWLYSQHVKSIDEMTNISKANREKLA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             + I   E +D + S DGT K+L  FP     G   +ETVYIPE+ R TLCVSSQ+GC 
Sbjct: 61  AEYEIGCKEPIDAQHSKDGTIKYL--FPTD--SGKF-VETVYIPEEDRATLCVSSQIGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NL+A +IL Q+                    +P    K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGNLSATDILNQIY------------------SLPERD-KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DNV ++  + +   G ++S +RIT+S+ G    + R  EE    +AIS+H+
Sbjct: 157 GQGEPMDNLDNVLRTTEVLTADFGYAWSPKRITVSSVGIKGKLKRFLEESNCHVAISMHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R+ L+P  R   +E +++   +Y   S+ RR++FEY++ KG+NDS   A  ++K+
Sbjct: 217 PLHEQRSELMPAERGMSIESIVELLSNYD-FSHQRRLSFEYIVFKGVNDSEEHAKAIVKL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GI  ++NLI F+P P       D   +  F   + + G  + IR  RG DI AACG L
Sbjct: 276 VRGIECRVNLIRFHPIPNIPLHGVDDHKMEQFRNYLTQHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSK 370
            +  K
Sbjct: 336 STAKK 340


>gi|47569490|ref|ZP_00240170.1| radical SAM enzyme, Cfr family [Bacillus cereus G9241]
 gi|47553819|gb|EAL12190.1| radical SAM enzyme, Cfr family [Bacillus cereus G9241]
          Length = 362

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDESE--------------ERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|229031494|ref|ZP_04187494.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           AH1271]
 gi|228729783|gb|EEL80763.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           AH1271]
          Length = 362

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 205/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + ++++  MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYDDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   G+    R +T+STSG VP I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIINHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+ + +LR+ L+PINR Y L  L++A ++Y      RRITFEY +  G ND    A  L 
Sbjct: 232 HSANTELRSKLMPINRAYKLPDLMEAVKYYVN-KTGRRITFEYGLFGGENDQVEQAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|322412262|gb|EFY03170.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 360

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 206/368 (55%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + RE+L    +   I     + R +QIW W+Y + ++ F  M++IS++   +L 
Sbjct: 2   KPSIYSLTREDL----IAWAIDHGQKKFRATQIWDWVYKKRVQSFDDMTNISKDFIAILK 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  ENFCVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L + EI  Q++L +    D  G ++           ++S++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYF-DERGQDE-----------RVSHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYQNVMSFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ INR +PLE L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNDLRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAQEL 277

Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|320101749|ref|YP_004177340.1| 23S rRNA m(2)A-2503 methyltransferase [Isosphaera pallida ATCC
           43644]
 gi|319749031|gb|ADV60791.1| 23S rRNA m(2)A-2503 methyltransferase [Isosphaera pallida ATCC
           43644]
          Length = 400

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 127/334 (38%), Positives = 188/334 (56%), Gaps = 22/334 (6%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R+ Q+ +WI+ +  R F  M+D+   +R  L   +++    ++  + + DGT K LL   
Sbjct: 55  RSDQVARWIFQKRARSFAVMTDLPAGLRLALESSWAVYQTRVIRRQTATDGTDKLLLE-- 112

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
             C  G   IETV + E+ R T+CVSSQVGC + C FC +G + + RNLT  EI  ++L 
Sbjct: 113 --CRDGR-RIETVLMREEDRRTVCVSSQVGCGMGCVFCASGLKGVERNLTVGEITEELLH 169

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
           AR LL +                 +++NIV+MGMGE L N +N+  +L       GL  S
Sbjct: 170 ARDLLPEH---------------ERLTNIVVMGMGESLANLENLIAALDRICSPSGLGLS 214

Query: 214 KRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           +R +T+ST G    I R+   +    LA+SLHA + +LR+ LVPIN K  L  +++A  H
Sbjct: 215 QRAVTISTVGLPEKIKRLAALDRRYHLAVSLHAPTEELRDQLVPINHKVGLRAVMEAADH 274

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y  ++  R++TFEYV+L GIND  RDA +L+ +L G  A +NLIP+NP  G  Y     +
Sbjct: 275 YFAVTG-RQVTFEYVLLGGINDRDRDARDLVALLAGRKAHVNLIPYNPVAGLPYERPAPR 333

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           D+  F    ++ G S  +R  +G  I AACGQL+
Sbjct: 334 DLDRFVRRCRQGGLSVSVRKTKGKRIDAACGQLR 367


>gi|258511306|ref|YP_003184740.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478032|gb|ACV58351.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 348

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 199/337 (59%), Gaps = 22/337 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI-IYPEIVDEKISCDGTRKWLLR 91
            R  Q+++W+Y +  + F  M+++ + +R  LN+   +    ++V +    D T K+LL 
Sbjct: 25  FRAVQLYEWMYQKRAKSFDEMTNLPKALRQRLNEMAYLRSAKQVVRQDSKVDPTTKFLLA 84

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
           +P       V +E+V +      ++CVSSQVGC + C+FC +    ++R++TA E++ QV
Sbjct: 85  WP-----DGVTVESVLMRHGYGNSVCVSSQVGCKMGCTFCASTLGGMIRHMTAGEMVEQV 139

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           + ++SLL +              VG+++S++V+MG GEP+ N+D V + + I ++  GL+
Sbjct: 140 MHSQSLLDE--------------VGQRVSSVVVMGSGEPMDNYDQVMRFIDIITNEHGLN 185

Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
             +R IT+ST G VP I R+ EE   + LA+SLHA ++ +R  ++P+N+ YP+  L++AC
Sbjct: 186 IGQRHITVSTVGLVPGIRRLAEEGRQITLAVSLHAPNDAIRGRMMPVNKAYPIAKLMEAC 245

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
             Y      RRI+FEY ++ G NDS   A  L +++KG+P  +NLIP N  P   Y  +D
Sbjct: 246 HDYY-RKTGRRISFEYALVAGENDSLECAKELAELVKGLPCHVNLIPVNYVPERGYRRTD 304

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +K I  F   +  +G ++ IR   G DI AACGQL++
Sbjct: 305 RKQIFAFWRALLDAGVNATIRREMGHDIAAACGQLRA 341


>gi|15900662|ref|NP_345266.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pneumoniae TIGR4]
 gi|81620462|sp|Q97RN5|RLMN_STRPN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|14972243|gb|AAK74906.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
          Length = 361

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  ++ + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           +IS+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RISHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 TELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKECVLAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|225569231|ref|ZP_03778256.1| hypothetical protein CLOHYLEM_05313 [Clostridium hylemonae DSM
           15053]
 gi|225162030|gb|EEG74649.1| hypothetical protein CLOHYLEM_05313 [Clostridium hylemonae DSM
           15053]
          Length = 356

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 123/336 (36%), Positives = 190/336 (56%), Gaps = 25/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLR 91
            R+ QI++W++VR    F  M+++S+++R  L+  + I    + + +IS  D T K+L R
Sbjct: 26  FRSRQIYEWLHVRLADSFDEMTNLSKKLREQLSAEYEIREVTLTERQISSVDPTEKFLFR 85

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
               C G  VE  +V +      ++C+SSQ GC + C FC +    L+RNLT  E+L Q+
Sbjct: 86  L---CEGNMVE--SVLMRYSYGNSVCISSQAGCRMGCRFCASTLDGLMRNLTPSEMLRQI 140

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
              + L+G+                 +ISN+V+MG GEPL N+DN  + + + SD  GL+
Sbjct: 141 YQIQKLIGE-----------------RISNVVVMGTGEPLDNYDNFLQFIRMVSDEHGLN 183

Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            S+R IT ST G VPN+ R+ EE + + LA+SLH  + + R  L+P+  KY L  +++AC
Sbjct: 184 ISQRNITASTCGIVPNMRRLAEEDLQITLALSLHGSTQEKRKALMPVANKYELAEVLEAC 243

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
            +Y      RRITFEY +++G+ND P D   L  +LK     +NLIP NP     ++  D
Sbjct: 244 DYYFE-KTGRRITFEYSLVQGVNDQPEDVRELTALLKRRNCHLNLIPVNPIKERNFVRPD 302

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            K+   F   ++++G +  IR  RG DI  ACGQL+
Sbjct: 303 SKNAHEFKNKLEKNGINVTIRRERGSDIDGACGQLR 338


>gi|148992431|ref|ZP_01822126.1| hypothetical protein CGSSp9BS68_08432 [Streptococcus pneumoniae
           SP9-BS68]
 gi|168488437|ref|ZP_02712636.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae SP195]
 gi|147928748|gb|EDK79761.1| hypothetical protein CGSSp9BS68_08432 [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572944|gb|EDT93472.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae SP195]
 gi|332073108|gb|EGI83587.1| radical SAM superfamily protein [Streptococcus pneumoniae GA17570]
          Length = 361

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQGIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +NDS   AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDSVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   +  NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 TELLKNIKKLSYANLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|28210911|ref|NP_781855.1| ribosomal RNA large subunit methyltransferase N [Clostridium tetani
           E88]
 gi|75542526|sp|Q895P8|RLMN_CLOTE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|28203350|gb|AAO35792.1| florfenicol resistance protein [Clostridium tetani E88]
          Length = 349

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 133/361 (36%), Positives = 201/361 (55%), Gaps = 27/361 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++I ++   LE+ L K  I  +    R  Q+  W+Y +G+ +F+ M +I + + + L ++
Sbjct: 3   NMINLLDLSLED-LKKWMIENKEKEFRAKQVLDWVY-KGVYNFEAMKNIPKVITNKLQEN 60

Query: 68  FSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F +  P +V + +S D  T K+L ++    I     IE+V +  K   T+CVS+QVGC +
Sbjct: 61  FYLSVPSVVQKYVSKDESTVKFLFKYNDGNI-----IESVVMKYKHGNTICVSTQVGCKM 115

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    +VR+L+  EIL QVL A+                    G +ISNIVMMG
Sbjct: 116 GCTFCASTIGGIVRSLSHGEILGQVLKAQ-----------------EETGERISNIVMMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N+DN    + + +   GL+  +R ITLST G VP I ++ EE + + LAISLHA
Sbjct: 159 SGEPLDNYDNSLNFIRMVNAENGLNIGQRHITLSTCGIVPKIRQLAEENLQITLAISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R   +PI   Y +E LI+AC +Y   +N RRITFEY ++  +ND    A  L  +
Sbjct: 219 PNDNIRRKTMPIASVYSVEELIEACNYYINKTN-RRITFEYALVSNLNDKEVHAEELATL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N     ++  S    I  FS  + +SG  + IR   G DI AACGQL
Sbjct: 278 LKGMLCHVNLIPVNKIDEKDFKSSSTNRIKNFSNILLKSGIQTTIRREMGSDINAACGQL 337

Query: 366 K 366
           +
Sbjct: 338 R 338


>gi|299141914|ref|ZP_07035049.1| radical SAM enzyme, Cfr family [Prevotella oris C735]
 gi|298576765|gb|EFI48636.1| radical SAM enzyme, Cfr family [Prevotella oris C735]
          Length = 348

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 30/374 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L+GM   EL+EA  ++G+P         QI KW+Y   ++    M++IS+  R  L 
Sbjct: 5   KKALLGMTLNELKEACKQLGMPA----FTGGQIAKWLYTHHVKHIDEMTNISKTNRAKLE 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + ++I   E ++ ++S DGT K+L  FP         +ETVYIPE  R TLCVS QVGC 
Sbjct: 61  EAYTIGCAEALEAQLSKDGTIKYL--FPT---ASGKFVETVYIPENDRATLCVSCQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LT  +IL Q+                    +P V  K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLTTCDILNQIY------------------SLPEVD-KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DN+ ++  I +   G ++S +RIT+S+ G    + R  EE    +AISLH+
Sbjct: 157 GQGEPMDNLDNILRTTEILTADYGWAWSPKRITVSSVGVKNKLKRFIEESDCHVAISLHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              + R  L+P  +   +  +++  R+Y   S+ RR++FEY++  G+NDS   A  L+K+
Sbjct: 217 PIAEQRAELMPAQKGMSIAEIVELLRNYD-FSHQRRLSFEYIVFGGVNDSMTHARELVKL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+  +INLI F+  P      +D+K +    + +   G  + IR  RG DI AACG L
Sbjct: 276 LKGLDCRINLIRFHQIPDVPLHGADEKRMEELRDYLTSHGIFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSKRIPKVPRQE 379
            S SK+I ++  ++
Sbjct: 336 -STSKKIGEIRHEQ 348


>gi|319937496|ref|ZP_08011901.1| ribosomal RNA large subunit methyltransferase N [Coprobacillus sp.
           29_1]
 gi|319807336|gb|EFW03945.1| ribosomal RNA large subunit methyltransferase N [Coprobacillus sp.
           29_1]
          Length = 342

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 201/362 (55%), Gaps = 28/362 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +S+    +E+L +  L++G      + R +Q+++W+Y++ +  F  M++ISQ +R  L+ 
Sbjct: 2   KSIYDYTQEQLIDEFLELGEK----KFRATQVFEWLYLKNVNSFHEMNNISQGLRQKLSA 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            +SI   +I  +++S DGT K+L        GG   IE V +      +LC++SQ+GC++
Sbjct: 58  LYSIGPLQINVKQVSKDGTIKYLFELED---GGL--IEAVLMVHDYGRSLCITSQLGCNM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +G  K  RNLTA E++ QVL                  V+   G ++S++V+MG
Sbjct: 113 ACEFCASGLLKKQRNLTAGEMVNQVL-----------------TVMHDTGERVSHVVVMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+DN+   + I +   GL+   R IT+ST G    I     E I   LAISLHA
Sbjct: 156 TGEPFDNYDNMMNFIHIINHPKGLAIGARHITISTCGLCDKIEMYAHEGIQSNLAISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN L+PIN+KYP++ L +   +Y   +N RR+T EY++LKG+ND    A  L   
Sbjct: 216 PNDEIRNQLMPINKKYPMDKLRETLAYYIQKTN-RRVTLEYILLKGVNDDITHARQLAHY 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KG+ A +NLIP+N      Y  S QKD+  F   + R   +   R   G DI  ACGQL
Sbjct: 275 VKGLNAYVNLIPYNAVDEHGYQQSLQKDVEAFKAELLRFHINVTQRKEHGRDIDGACGQL 334

Query: 366 KS 367
           ++
Sbjct: 335 RA 336


>gi|317505349|ref|ZP_07963277.1| cfr family radical SAM enzyme [Prevotella salivae DSM 15606]
 gi|315663563|gb|EFV03302.1| cfr family radical SAM enzyme [Prevotella salivae DSM 15606]
          Length = 348

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 202/374 (54%), Gaps = 30/374 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L+GM   EL+EA   +G+P         QI KW+Y   ++    M++IS+  R  L 
Sbjct: 5   KKALLGMTLYELKEACRALGMPA----FTGGQIAKWMYTHHVKQIDEMTNISKNNRAKLA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + ++I   E +D + S DGT K+L  FP     G   +ETVYIPE  R TLCVS QVGC 
Sbjct: 61  EAYTIGCNEAIDAQHSKDGTIKYL--FPTH--DGKF-VETVYIPENDRATLCVSCQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LT  +IL QV                    +P V  K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLTTTDILNQVY------------------SLPEVD-KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DN+ ++  I +   G ++S +RIT+S+ G    + R  EE    +AISLH+
Sbjct: 157 GQGEPMDNLDNILRTTEILTADYGWAWSPKRITVSSVGVKNKLKRFLEESNCHVAISLHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              + R  L+P  +   +  ++   R+Y   S+ RR++FEY++  GINDS   A  ++K+
Sbjct: 217 PIAEQRAALMPAQKGMSISEIVSLLRNYD-FSHQRRLSFEYIVFGGINDSTTHAREIVKL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L G+  ++NLI F+  PG     +D+K +    + +      + IR  RG DI AACG L
Sbjct: 276 LNGLDCRVNLIRFHQIPGVPLHGADEKRMEELRDYLTSHDVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSKRIPKVPRQE 379
            S SK+I ++  ++
Sbjct: 336 -STSKKIGEIRHEQ 348


>gi|259047489|ref|ZP_05737890.1| Cfr family radical SAM enzyme [Granulicatella adiacens ATCC 49175]
 gi|259035680|gb|EEW36935.1| Cfr family radical SAM enzyme [Granulicatella adiacens ATCC 49175]
          Length = 371

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 127/343 (37%), Positives = 201/343 (58%), Gaps = 28/343 (8%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI---SCDGTRKW 88
           + R  Q+W W+Y + +  F+ M+++ + +   L + F+  +P +++E+I   S DGTRK+
Sbjct: 37  KFRAGQLWDWLYRKRVTSFEEMTNLPKALIEELQEEFT--FP-VLNERIKQQSTDGTRKF 93

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L       +     IETV +P++   ++CV++QVGC++ C+FC +G     R+L A EI+
Sbjct: 94  LFELADGLL-----IETVLMPQEYGLSICVTTQVGCNIGCTFCASGIIAKQRDLVAGEIV 148

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            QV+  +  L +             S G ++S+IV+MG+GEP  N+DNV K L + +   
Sbjct: 149 AQVMHVQRTLDEV------------SPGDRVSHIVVMGIGEPFDNYDNVIKFLKVVNSDK 196

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           GL    R IT+STSG  P I    +E + V LA+SLHA  ND R+ ++ INRKYP+E+++
Sbjct: 197 GLGIGARHITVSTSGLAPKIREFADEGLQVNLALSLHAPDNDTRSRIMRINRKYPIEVVM 256

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNP-WPGC 324
           DA   Y   +N RR+TFEY+ML  +NDS   A  L  +L  K   + +NLIP+N      
Sbjct: 257 DAINEYIAKTN-RRVTFEYIMLDHVNDSVEQAQQLADLLADKKRLSYVNLIPYNKVREHD 315

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +Y  S ++ +V F + +K++  +  +R   G DI AACGQL+S
Sbjct: 316 QYERSGKERVVAFYDVLKKNHINCVVRKEFGHDIEAACGQLRS 358


>gi|326798558|ref|YP_004316377.1| ribosomal RNA large subunit methyltransferase N [Sphingobacterium
           sp. 21]
 gi|326549322|gb|ADZ77707.1| Ribosomal RNA large subunit methyltransferase N [Sphingobacterium
           sp. 21]
          Length = 379

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 200/365 (54%), Gaps = 24/365 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N  KK  +  +  E+L+E+LL +G        R  QI++W++++   DF  M+++S+++R
Sbjct: 28  NMGKKVDIRSLSLEQLKESLLALG----EQSFRAKQIFEWLWMKSCVDFDNMTNLSKKLR 83

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L ++F I    I   + S D T K   +     I     IE V IP   R T CVSSQ
Sbjct: 84  DSLKENFIINAVRIDKSQYSADKTIKSTFKLFDNNI-----IEGVLIPTPDRMTACVSSQ 138

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGCSLTC FC TG     RNL A+EI  QV+L           +  E   IP     +SN
Sbjct: 139 VGCSLTCKFCATGYMDRKRNLNADEIYDQVVLINK--------QAEENYSIP-----LSN 185

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           IV MGMGEPL N+ NV KS+   +   GL+ + +RIT+ST+G    I ++G++ +   LA
Sbjct: 186 IVYMGMGEPLLNYANVLKSIERITAPDGLNMAAKRITVSTAGIAKMIKKLGDDQVKFNLA 245

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++  RN ++PIN +  L+ L +A ++Y        +T+EY++    ND   DA 
Sbjct: 246 LSLHAANDAKRNEIMPINEQNSLKALAEALKYYFA-KTKNPVTYEYIVFNNFNDELEDAA 304

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L    K +P K+N+I +NP    ++  ++   I  F+  +++ G ++ +R  RG DI A
Sbjct: 305 ELASFCKHLPCKVNIIEYNPIAFADFENAEGDKIDRFAAFLRKRGITTNVRRSRGKDIDA 364

Query: 361 ACGQL 365
           ACGQL
Sbjct: 365 ACGQL 369


>gi|310644715|ref|YP_003949474.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus
           polymyxa SC2]
 gi|309249666|gb|ADO59233.1| Ribosomal RNA large subunit methyltransferase N [Paenibacillus
           polymyxa SC2]
          Length = 365

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 213/375 (56%), Gaps = 28/375 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KKES+ G+  ++L   LL+ G      + R  Q+W  +Y + I DF  M+++ +    L
Sbjct: 1   MKKESIYGLTLDQLTAWLLEHGYK----KSRALQVWDALYRKRITDFAAMTEVHENCTRL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FSI   E   ++ S DGT K+L R     +     IETV +  K   ++CV++QVG
Sbjct: 57  LAENFSIETLEEHVKQQSADGTVKFLFRLQDGNL-----IETVLMRHKFGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+L++ EI+ Q++  +  L                 G ++S++V
Sbjct: 112 CNIGCSFCASGLLKKSRDLSSGEIVGQIMKVQLYLDQ------------ERPGDRVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  NF N+   + +  D  GL+  +R IT+STSG    I    + ++ V LAIS
Sbjct: 160 VMGIGEPFDNFVNLSDFIRVIKDHKGLAIGQRHITVSTSGLADKIIEFADSDLHVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR  P+E L+ A  +Y   +N RRIT EY++LK +ND    AL L
Sbjct: 220 LHAPNNEIRTRIMKINRAIPIEKLMQAIDYYLDKTN-RRITLEYILLKDVNDGKEHALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            +++  +   A +NLIP+NP     +Y  S+ + I  F + +K+ G S  +R   G+DI 
Sbjct: 279 AELVGHRRNLANVNLIPYNPVDEHSQYQRSESESITGFYDVLKKQGISCSVRLEHGVDID 338

Query: 360 AACGQLKSLSKRIPK 374
           AACGQL+  SK+I K
Sbjct: 339 AACGQLR--SKQIRK 351


>gi|325478666|gb|EGC81777.1| 23S rRNA m2A2503 methyltransferase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 341

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 201/364 (55%), Gaps = 30/364 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           KE++     +ELEE   + G    + + R  Q+++ I+V  I DF  M+D+S+++R  L+
Sbjct: 2   KENINDKSIKELEEIFEENG----YKKFRAKQVYRQIHVNKINDFSKMTDLSKDMREALD 57

Query: 66  QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + +     ++  E +S  D T+K+L       I     IE+VY+  ++R T+C+SSQVGC
Sbjct: 58  KKYKFSSLKLRREFVSKIDSTKKYLFELEDGNI-----IESVYMEYENRKTICISSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    LVRN+TA E++ +V     + GD                  I+NIV+
Sbjct: 113 RMGCKFCASTKNGLVRNMTAAELIEEVYELERINGD------------------INNIVI 154

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEPL N+DN+KK + I +D  G + S R ITLSTSG  P I ++ +  + + LA+SL
Sbjct: 155 MGIGEPLDNYDNIKKFIEIITDEKGRNLSHRSITLSTSGLAPMIIKLADSGLDINLALSL 214

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H   +  R   +P++ KY +  L+ A  +Y   +  RR++FEYV++ G+N+   D  NL+
Sbjct: 215 HYADDKKRRQFMPVSNKYSIRELMKATDYYLDKT-KRRVSFEYVVIDGVNNLDEDVDNLV 273

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG    INLIP NP     Y       +  F + +     ++ IR   G DI A+CG
Sbjct: 274 RLLKGKNVHINLIPLNPIEEFSYNKPKNTALKEFRDKLVSKKLNATIRRSMGSDIDASCG 333

Query: 364 QLKS 367
           QL++
Sbjct: 334 QLRN 337


>gi|228992592|ref|ZP_04152519.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
           pseudomycoides DSM 12442]
 gi|228998640|ref|ZP_04158227.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides
           Rock3-17]
 gi|229006141|ref|ZP_04163828.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides
           Rock1-4]
 gi|228755094|gb|EEM04452.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides
           Rock1-4]
 gi|228761108|gb|EEM10067.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides
           Rock3-17]
 gi|228767226|gb|EEM15862.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
           pseudomycoides DSM 12442]
          Length = 362

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 207/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E++  L + G P    + R  QI+ W+Y + +++++ M+++S+ +R  L
Sbjct: 15  KKTSIYSLQLHEMQNWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMTNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TDERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   G+    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIINHEKGIHIGARHMTVSTSGIIPKIYKFAEEDMQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + +LR+ L+PINR Y L  L++A ++Y   +  RRITFEY +  G ND    A  L 
Sbjct: 232 HAPNTELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 QLLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|116511012|ref|YP_808228.1| hypothetical protein LACR_0188 [Lactococcus lactis subsp. cremoris
           SK11]
 gi|123025653|sp|Q032R6|RLMN_LACLS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|116106666|gb|ABJ71806.1| 23S rRNA m(2)A-2503 methyltransferase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 365

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 214/372 (57%), Gaps = 29/372 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S+ G+ R++L E  ++ G      + R +Q+W W+Y + ++ F+ MS++S      LN+ 
Sbjct: 12  SIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAVFIDKLNEA 67

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +   E V  + S DGT K+L   P +     V IETV + +    ++CV++QVGC++ 
Sbjct: 68  FILNPLEQVVVQESADGTVKYLFMLPDK-----VMIETVLMRQSYGLSVCVTTQVGCNMG 122

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +G  K  R++TA EI+ Q++L +          D  G+       ++S++V+MG+
Sbjct: 123 CTFCASGILKKERDVTAGEIVSQIMLVQKYF-------DERGL-----DERVSHVVVMGI 170

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHA 245
           GEP  N++++   L + +D  GL+   R IT+ST GF+P   +    E + + LAISLHA
Sbjct: 171 GEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISLHA 230

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+LR  L+ I R  PLE L +A  +Y   +N RR+T+EY+ML G NDSP  A  L  +
Sbjct: 231 PNNELRTSLMRITRNAPLEKLFEAIDYYTETTN-RRVTYEYIMLSGENDSPEIAQQLADL 289

Query: 306 LK--GIPAKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K     + +NLIP+NP     +Y  S + +   F + +K++G +  +R   G DI AAC
Sbjct: 290 IKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDAAC 349

Query: 363 GQLKSLSKRIPK 374
           GQL+  SK+I K
Sbjct: 350 GQLR--SKQIKK 359


>gi|148997156|ref|ZP_01824810.1| hypothetical protein CGSSp11BS70_10350 [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575427|ref|ZP_02721363.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae MLV-016]
 gi|194397178|ref|YP_002037414.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pneumoniae G54]
 gi|307067370|ref|YP_003876336.1| putative Fe-S-cluster redox enzyme [Streptococcus pneumoniae AP200]
 gi|254807215|sp|B5E369|RLMN_STRP4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|147756856|gb|EDK63896.1| hypothetical protein CGSSp11BS70_10350 [Streptococcus pneumoniae
           SP11-BS70]
 gi|183578600|gb|EDT99128.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae MLV-016]
 gi|194356845|gb|ACF55293.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
           G54]
 gi|306408907|gb|ADM84334.1| Predicted Fe-S-cluster redox enzyme [Streptococcus pneumoniae
           AP200]
 gi|332202631|gb|EGJ16700.1| radical SAM superfamily protein [Streptococcus pneumoniae GA41317]
          Length = 361

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCSSGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 TELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|150026118|ref|YP_001296944.1| hypothetical protein FP2080 [Flavobacterium psychrophilum JIP02/86]
 gi|205829761|sp|A6H1B8|RLMN_FLAPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|149772659|emb|CAL44142.1| Protein of unknown function YloN [Flavobacterium psychrophilum
           JIP02/86]
          Length = 347

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 124/334 (37%), Positives = 196/334 (58%), Gaps = 20/334 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +Q+++W++ +G   F+ M+++S+  R +L ++F I + ++   + S DGT K  +R 
Sbjct: 28  FRGNQVYEWLWSKGAHSFEDMTNVSKGTRQMLVENFVINHIKVDTMQRSSDGTVKNAVRL 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               I     +E+V IP ++R T CVSSQVGCSL C+FC T   K +RNL   EI  QVL
Sbjct: 88  HDGLI-----VESVLIPTETRTTACVSSQVGCSLDCNFCATARLKRMRNLEPGEIYDQVL 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                        D E  +     R +SNIV MGMGEPL N++NV K++ + + S GL  
Sbjct: 143 AI-----------DRESKLY--FNRPLSNIVFMGMGEPLMNYNNVIKAIDMITSSEGLGM 189

Query: 213 SKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S +RIT+STSG    I ++ + E+   LA+SLH+   ++RN ++P  + +PL  L +A +
Sbjct: 190 SPKRITVSTSGVSKMIKKMADDEVKFKLAVSLHSAVEEIRNKIMPFTKSFPLPELREALQ 249

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           ++   + ++ IT+EYV+ KGIND+      L+K  K +P K+NLI +NP    E+  +  
Sbjct: 250 YWYHKTKSK-ITYEYVVWKGINDNKESVDALVKFCKHVPCKVNLIEYNPIDDGEFQQASP 308

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           + I  + + ++ +G  + +R  RG DI AACGQL
Sbjct: 309 ESINAYIKALEANGIIAKVRHSRGKDIDAACGQL 342


>gi|251782933|ref|YP_002997236.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391563|dbj|BAH82022.1| radical SAM family enzyme [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127736|gb|ADX25033.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 360

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 206/368 (55%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + RE+L    +   I     + R +QIW W+Y + ++ F  M++IS++   +L 
Sbjct: 2   KPSIYSLTREDL----IAWAIDHGQKKFRATQIWDWLYKKRVQSFDDMTNISKDFIAILK 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  ENFCVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L + EI  Q++L +    D  G ++           ++S++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYF-DERGQDE-----------RVSHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYQNVMSFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ INR +PLE L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNDLRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAQEL 277

Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|298208115|ref|YP_003716294.1| hypothetical protein CA2559_07736 [Croceibacter atlanticus
           HTCC2559]
 gi|83848036|gb|EAP85906.1| hypothetical protein CA2559_07736 [Croceibacter atlanticus
           HTCC2559]
          Length = 346

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 205/366 (56%), Gaps = 26/366 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +  + +E+L +  +  G        R +Q+++W++ +G   F+ M++IS+E R +L 
Sbjct: 5   KKDIRALSKEQLRDFFVSEGDKA----FRGNQVYEWLWNKGAHTFEEMTNISKETRDMLE 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F I +  +   + S DGT K  ++     +   + +E+V IP  SR T CVSSQVGCS
Sbjct: 61  ANFVINHILVDQMQRSSDGTIKNAVK-----LHDGLTVESVLIPTASRTTACVSSQVGCS 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T   K +RNL  +EI  QV+             D E  +     R +SNIV M
Sbjct: 116 LDCKFCATSRLKRMRNLNPDEIYDQVVAI-----------DRESRLYHD--RPLSNIVFM 162

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISL 243
           GMGEPL N++NV KS+   +   GL  S RRIT+STSG VP I +    EE+   LA+SL
Sbjct: 163 GMGEPLMNYNNVLKSIEKITSEDGLGMSPRRITVSTSG-VPKIIKKMADEEVKFNLAVSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  +++R  ++P N  +PL+ L ++  ++   +  ++IT+EYV+ K IND   D   L+
Sbjct: 222 HSAIDEVRTKIMPFNEHFPLKDLRESLEYWYAKT-GKQITYEYVVWKDINDRTEDIDALV 280

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K  K +P+K+NLI +NP    E+  +    I  +   ++R+  +  +R  RG DI AACG
Sbjct: 281 KFCKYVPSKVNLIEYNPIDDGEFQQAPDAAINAYVNALERNNITVTVRRSRGKDIDAACG 340

Query: 364 QLKSLS 369
           QL + S
Sbjct: 341 QLANKS 346


>gi|332664665|ref|YP_004447453.1| ribosomal RNA large subunit methyltransferase N [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332333479|gb|AEE50580.1| Ribosomal RNA large subunit methyltransferase N [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 343

 Score =  218 bits (556), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 128/355 (36%), Positives = 198/355 (55%), Gaps = 26/355 (7%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           ELEE   ++G      + R  Q+++W++ +G+R F  M+++S+ +R  L   F I    I
Sbjct: 10  ELEELFKEMG----EAKFRAKQVYEWLWQKGVRSFDAMTNLSKSLREKLAASFVI--NGI 63

Query: 76  VDEKI--SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           V++K+  S DGT K   R      G  +E   + +P+  R T+CVS QVGCSLTC FC T
Sbjct: 64  VEDKVQRSADGTIKSRFRLHD---GHMIESVLIPVPDDKRFTVCVSCQVGCSLTCKFCAT 120

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G    VRNL A EI  QV++             +    + + G  +SNIV MGMGEPL  
Sbjct: 121 GRMNRVRNLDAAEIYDQVVM-------------VNQQCLETFGHPLSNIVYMGMGEPLLA 167

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
           ++NV +S+   +   GL  S RRIT+ST+G    I ++ ++     LA+SLHA  +  R+
Sbjct: 168 YNNVMESIERLTAPDGLHMSPRRITISTAGIAKMIKKLADDGCKTNLALSLHAADDLKRD 227

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            L+PIN +  L +L+DA  ++   ++  RI++EY+  + +ND   DA NL K+ +  P +
Sbjct: 228 ELMPINEQNNLAVLMDALEYFYRKTH-NRISYEYITFQNVNDGLDDAANLAKLCRRFPVR 286

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +N+I +NP     YL S++  I  F+  ++    +  +R  RG DI AACGQL +
Sbjct: 287 VNIIEYNPIGDVPYLKSEEDRIDAFARYLREREITVTVRRSRGKDIDAACGQLAN 341


>gi|157364703|ref|YP_001471470.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
           lettingae TMO]
 gi|205829915|sp|A8F8C2|RLMN_THELT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157315307|gb|ABV34406.1| radical SAM enzyme, Cfr family [Thermotoga lettingae TMO]
          Length = 343

 Score =  218 bits (556), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 202/361 (55%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++ M  E+  + + ++G+     + R  QI  WIY + +  F+ M+++S++ R LL ++
Sbjct: 2   NILSMTYEKFVQKIQELGLE----KYRADQILDWIYKKHVFVFEQMTNLSKQHRSLLREN 57

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F I  P+IV +++S  D T K+L       +     IE+V +  +   T C+S+Q+GC +
Sbjct: 58  FCIQIPKIVSKRVSSIDKTTKYLYE-----LSDGNTIESVLLFHEGYATACISTQIGCPV 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC TG    VRNL A EI+ Q+L                  +     + + NIV MG
Sbjct: 113 KCSFCATGQSGFVRNLDAGEIVSQIL-----------------AIEKDSKQTVRNIVYMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEPL N+DNV KS+ I  D    +   RR+TLST G    I ++ EE + + LAISLHA
Sbjct: 156 MGEPLLNYDNVIKSIKILIDKKTKNIGIRRVTLSTVGIPEMILKLSEERLDLNLAISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+ R+ ++PINRKY ++ +I+A ++Y   S+ RR+T EY+++K  ND   DA  L K+
Sbjct: 216 STNEKRDQIIPINRKYSIQEIINAAKNYQERSD-RRLTIEYILIKEFNDFDEDARKLAKL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L G+   +NLIP N      +    +  I  F E +  SG  + IR  +G DI AACGQL
Sbjct: 275 LNGLKVFVNLIPVNS-TFSNFEKPAKWKINRFKEILINSGIEAEIRYEKGADIEAACGQL 333

Query: 366 K 366
           +
Sbjct: 334 R 334


>gi|313894907|ref|ZP_07828467.1| 23S rRNA m2A2503 methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312976588|gb|EFR42043.1| 23S rRNA m2A2503 methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 346

 Score =  218 bits (556), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 197/362 (54%), Gaps = 26/362 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++ GM  EEL  AL   GIP    R R +QI + IY RG   F  ++ + + +R  L ++
Sbjct: 2   NIFGMTVEELRAALAPFGIP----RFRAAQIAEGIYRRGAVSFDAITSLPKSLRAQLAEN 57

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F+I  P +V+   S DG T K L  F           ETV +      ++C+S+Q GC++
Sbjct: 58  FTIERPTVVNRLHSADGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCISTQAGCAM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    LVRNLT  EI  Q +     + DF   E          G ++  IV+MG
Sbjct: 113 GCAFCASTLHGLVRNLTRGEIAAQAIG----IADFLRQE----------GARVDTIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N+DNV  +L +  +   L    R +TLSTSG VP I R+ +E I + LAISLHA
Sbjct: 159 SGEPLENYDNVVGALRLLHEDYVLGLGYRGMTLSTSGIVPGIERLADEGIPISLAISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR+ ++P+NR+YPL  ++ A RHY   +  RR+T+EY++++ +ND  R+A  L  +
Sbjct: 219 PTDELRSRIMPVNRRYPLADVLRAARHYAARTK-RRVTYEYILIRDVNDGVREAEQLAAL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+   A +NLIP NP             I  F   ++    ++ +R   G DI AACGQL
Sbjct: 278 LRDRLASVNLIPINPVAERSLHRPSSNAIRRFQRVLEERHITATLRREMGTDIRAACGQL 337

Query: 366 KS 367
           ++
Sbjct: 338 RN 339


>gi|255533736|ref|YP_003094108.1| radical SAM enzyme, Cfr family [Pedobacter heparinus DSM 2366]
 gi|255346720|gb|ACU06046.1| radical SAM enzyme, Cfr family [Pedobacter heparinus DSM 2366]
          Length = 348

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/333 (37%), Positives = 186/333 (55%), Gaps = 20/333 (6%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+++W++ +  R F  MS++ +++R  L+  ++I   E+   +IS D T K   R  
Sbjct: 30  RAKQVYQWLWEKSARSFAEMSNLPKDLRAKLDAQYAINVVEVNKSQISNDHTIKNAFRLY 89

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              I     +E V IP   R T CVSSQVGCSLTC FC TG     RNL A+EI  QV+L
Sbjct: 90  DGNI-----VEGVLIPMDDRMTACVSSQVGCSLTCKFCATGYMDRKRNLNADEIYDQVVL 144

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                        I+     +    ++NIV MGMGEPL N+ NV KS+   +   GL+ S
Sbjct: 145 -------------IDQQAKKNYNAPLTNIVYMGMGEPLLNYANVLKSIERITAPDGLNMS 191

Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            +RIT+ST+G    I ++G++ +   LA+SLHA ++  RN ++PIN    L+ L ++ ++
Sbjct: 192 YKRITVSTAGISKMIKKLGDDGVKFNLALSLHAANDKKRNEIMPINEHNSLKALAESLKY 251

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +    +T+EY++    ND   DA+ L K  K +P K+NLI +NP    +++ ++  
Sbjct: 252 YFAKT-KNPVTYEYIVFNHFNDEIEDAMELAKFCKHVPCKVNLIEYNPIQFADFINAEGD 310

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  FS  +K  G ++ IR  RG DI AACGQL
Sbjct: 311 KIDAFSNYLKSQGITTNIRRSRGKDIDAACGQL 343


>gi|301167567|emb|CBW27150.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 366

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 199/365 (54%), Gaps = 21/365 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S      EEL   L + G  Q+       +I++ +Y R   +F+ +  +S+     ++ 
Sbjct: 21  HSFYNQSLEELSHTLHESGFKQKSA----DEIFRLVYKRFNPNFEAVDTLSRRTIDFISN 76

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           H+    P+IV  + + D T K+L+      +    ++E+V IP   + T+C+SSQVGC++
Sbjct: 77  HYRFDLPKIVKVQNADDNTVKFLVE-----LADGNQVESVLIPFAKKYTICLSSQVGCAM 131

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC+TG Q L RNL A EI+ Q ++A   L +       E +  P       NIV MG
Sbjct: 132 KCSFCFTGLQGLKRNLEASEIIGQYIVAYKWLRE----NRPEKIASP-------NIVFMG 180

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
            GEPL NFD VKK++ I   + GL    R+ITLST+G++P + R  E   + LA+SLH+ 
Sbjct: 181 QGEPLHNFDQVKKAIEIFLTTEGLHLGFRQITLSTAGYLPGLERFSELPNINLALSLHSP 240

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++ RN L+P+N++Y LE L +       L   + IT+EY+++K +ND   D   L K L
Sbjct: 241 IDEDRNKLIPLNKRYSLEKLFEKLDQIKLLKR-QFITYEYLLIKDLNDRDEDITLLNKWL 299

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
               A IN+IPFN +PG  Y       +  F   ++R G +  +RT +G DILAACGQL 
Sbjct: 300 GQRRAIINIIPFNEFPGAPYKRPLTSKVNEFKTKLERLGLTVKVRTTKGSDILAACGQLN 359

Query: 367 SLSKR 371
           +L  +
Sbjct: 360 TLQSK 364


>gi|320530185|ref|ZP_08031255.1| radical SAM enzyme, Cfr family [Selenomonas artemidis F0399]
 gi|320137618|gb|EFW29530.1| radical SAM enzyme, Cfr family [Selenomonas artemidis F0399]
          Length = 346

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 197/362 (54%), Gaps = 26/362 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++ GM  EEL  AL   GIP    R R +QI + IY RG   F  ++ + + +R  L ++
Sbjct: 2   NIFGMTVEELRAALAPFGIP----RFRAAQIAEGIYRRGAVSFDAITSLPKSLRAQLAEN 57

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F+I  P +V+   S DG T K L  F           ETV +      ++C+S+Q GC++
Sbjct: 58  FTIERPTVVNRLHSADGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCISTQAGCAM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    LVRNLT  EI  Q +     + DF   E          G ++  IV+MG
Sbjct: 113 GCAFCASTLHGLVRNLTRGEIAAQAIG----IADFLRQE----------GARVDTIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N+DNV  +L +  +   L    R +TLSTSG VP I R+ +E I + L+ISLHA
Sbjct: 159 SGEPLENYDNVVGALRLLHEDYVLGLGYRGMTLSTSGIVPGIERLADEGIPISLSISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR+ ++P+NR+YPL  ++ A RHY  +   RRIT+EY++++ +ND  R A  L  +
Sbjct: 219 PTDELRSRIMPVNRRYPLADVMRAARHY-AVRTKRRITYEYILIRDVNDGVRAAEQLAAL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G  A +NLIP NP             I  F   ++    ++ +R   G DI AACGQL
Sbjct: 278 LRGRLASVNLIPINPVAERNLHRPSSNVIRRFQRTLEERHITATLRREMGTDIQAACGQL 337

Query: 366 KS 367
           ++
Sbjct: 338 RN 339


>gi|317121759|ref|YP_004101762.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter marianensis
           DSM 12885]
 gi|315591739|gb|ADU51035.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter marianensis
           DSM 12885]
          Length = 448

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 198/358 (55%), Gaps = 26/358 (7%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
           G++ EEL   L   G P      R  QI+ W++ RG+  F  M+D+ +++R  L      
Sbjct: 103 GLLPEELGRVLSAWGEPA----YRGRQIFAWLHRRGVTRFAEMTDLPKDLRRRLEALGDP 158

Query: 71  IYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           + P +   ++   DGTRK+LL      +     IETV +  +   +LCVSSQVGC++ C 
Sbjct: 159 VVPAVRRLQVDPQDGTRKYLLELEDGQL-----IETVLMRHRYGLSLCVSSQVGCAMGCR 213

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +    LVRNLTA E+  Q+L+    L +               G+++S++V+MG+GE
Sbjct: 214 FCASTLGGLVRNLTAAEMAGQLLVVNRDLAER--------------GQRVSHVVVMGIGE 259

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           PL N D   + L +A    G   S R +T+STSG VP I ++    + + LA+SLHA ++
Sbjct: 260 PLQNLDATLQFLRVAHHPQGAGISYRHMTVSTSGLVPRIRQLAHAGLPITLAVSLHAPND 319

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
            LR+ L+P+NR++P+  L+DACR Y   +  RRITFEYV+++ +ND P  A  L  ++ G
Sbjct: 320 ALRSWLMPVNRRWPIAELMDACREYVERTG-RRITFEYVLIEDVNDRPEHAAELADLVAG 378

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +   +NLIP+NP     +     + +  F   ++R G +  +R   G  I AACGQL+
Sbjct: 379 LNGHVNLIPWNPVSERPFRAPSPERVQAFVAALRRRGVNVTVRRELGQRIEAACGQLR 436


>gi|87308293|ref|ZP_01090434.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM
           3645]
 gi|87288850|gb|EAQ80743.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM
           3645]
          Length = 351

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 199/369 (53%), Gaps = 32/369 (8%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           L+  +++ G+P    + R  QI  WI     + F+ M+++ + +R  L +   +   EI 
Sbjct: 14  LQALVVQWGLP----KFRAQQIRSWIVENRAQSFEDMANLPKPLRSQLAEKAQLWSTEIA 69

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
               + DGT K LL+      GG   IE V + +  R T+C+S+QVGC++ C FC +G  
Sbjct: 70  RHTTAADGTEKLLLQLHD---GG--RIECVLLRDGDRRTICISTQVGCAMGCVFCASGLD 124

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
            + RNLT  EI+ Q+L  + LL                VG ++S+IV+MGMGEPL N D 
Sbjct: 125 GVERNLTVGEIIEQMLRLQRLL---------------PVGERLSHIVVMGMGEPLANVDR 169

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILV 255
           +  +L  AS   GL  S RRIT+ST G  P I ++ + +    LA+SLHA  + LRN +V
Sbjct: 170 LLSALDFASSEEGLGISHRRITISTVGLPPAIRKLADRDSRYHLAVSLHAPDDQLRNQIV 229

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
           P N+   +  +++A  HY  +S  RR+TFEYV+L  +ND P  A  L K+L+G PA +N+
Sbjct: 230 PTNKNIGIHAILEAADHYFEIS-GRRLTFEYVLLAELNDQPEHAHRLAKLLRGRPALLNI 288

Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
           IP+NP  G  Y    ++    F   ++ +G +   R  +G  I AACGQL+         
Sbjct: 289 IPYNPVAGLPYRTPSKEAQHAFRAILEGAGLTVKFRQKKGDKINAACGQLRR------NT 342

Query: 376 PRQEMQITG 384
           P   +QI+G
Sbjct: 343 PENLVQISG 351


>gi|149010606|ref|ZP_01831977.1| hypothetical protein CGSSp19BS75_04607 [Streptococcus pneumoniae
           SP19-BS75]
 gi|147765087|gb|EDK72016.1| hypothetical protein CGSSp19BS75_04607 [Streptococcus pneumoniae
           SP19-BS75]
          Length = 361

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLPHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           +IS+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RISHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFVCTINDDKGMAIGARHITISTSGLAHKIRDFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|288924769|ref|ZP_06418706.1| radical SAM enzyme, Cfr family [Prevotella buccae D17]
 gi|288338556|gb|EFC76905.1| radical SAM enzyme, Cfr family [Prevotella buccae D17]
          Length = 358

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 131/375 (34%), Positives = 204/375 (54%), Gaps = 30/375 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SL+G+   EL++   ++G+P         Q+ KW+Y + ++    M++IS+  R  L 
Sbjct: 4   KTSLLGLSLAELKDVAKRLGMPA----FTGGQMAKWLYGQHVKSIDEMTNISKANREKLA 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-----IETVYIPEKSRGTLCVSS 120
            H++I     +DE+ S DGT K+L       +G   E     +ETVYIP+K R TLCVS 
Sbjct: 60  GHYTIGCASPIDEQRSKDGTVKYLFPVTTTAVGENREAPVMFVETVYIPDKDRATLCVSC 119

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC TG Q    NL+  +IL QV                    +P V   ++
Sbjct: 120 QVGCKMNCLFCQTGKQGFEGNLSVADILNQVY------------------SLPEVD-NLT 160

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIV MG GEP+ N DNV ++  I +   G ++S +RIT+S+ G    + R  EE    +A
Sbjct: 161 NIVFMGQGEPMDNLDNVLRATEILTADYGWAWSPKRITVSSVGVKNKLRRFLEESDCHVA 220

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           IS+H+   + R  L+P  R   +E +++  ++Y   S+ RR++FEY++  G+NDS   A 
Sbjct: 221 ISMHSPLPEQRAELMPAQRGMGIEEVVELLKNYD-FSHQRRLSFEYIVFGGVNDSNAHAR 279

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++++LKG+  +INLI F+  PG     +++K +    + +   G  + IR  RG DI A
Sbjct: 280 EIVRLLKGLDCRINLIRFHQIPGVALHGAEEKRMEELRDYLTAHGVFTTIRASRGEDIFA 339

Query: 361 ACGQLKSLSKRIPKV 375
           ACG L S SK+I ++
Sbjct: 340 ACGLL-STSKKIEEL 353


>gi|125623071|ref|YP_001031554.1| hypothetical protein llmg_0194 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|205829781|sp|A2RHR3|RLMN_LACLM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|124491879|emb|CAL96800.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069818|gb|ADJ59218.1| ribosomal RNA large subunit methyltransferase N [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 365

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 216/374 (57%), Gaps = 33/374 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S+ G+ R++L E  ++ G      + R +Q+W W+Y + ++ F+ MS++S      LN+ 
Sbjct: 12  SIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAVFIDKLNEA 67

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +   E V  + S DGT K+L   P +     V IETV + +    ++CV++QVGC++ 
Sbjct: 68  FILNPLEQVVVQESADGTVKYLFMLPDK-----VMIETVLMRQSYGLSVCVTTQVGCNMG 122

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +G  K  R++TA EI+ Q++L +          D  G+       ++S++V+MG+
Sbjct: 123 CTFCASGILKKERDVTAGEIVSQIMLVQKYF-------DERGL-----DERVSHVVVMGI 170

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE----EIGVMLAISL 243
           GEP  N++++   L + +D  GL+   R IT+ST GF+P  A++ E     + + LAISL
Sbjct: 171 GEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMP--AKIKEFAHDNLQINLAISL 228

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N+LR  L+ I R  PLE L +A  +Y   +N RR+T+EY+ML G NDSP  A  L 
Sbjct: 229 HAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTN-RRVTYEYIMLSGENDSPEIAQQLA 287

Query: 304 KILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++K     + +NLIP+NP     +Y  S + +   F + +K++G +  +R   G DI A
Sbjct: 288 DLIKSRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDA 347

Query: 361 ACGQLKSLSKRIPK 374
           ACGQL+  SK+I K
Sbjct: 348 ACGQLR--SKQIKK 359


>gi|225850129|ref|YP_002730363.1| ribosomal RNA large subunit methyltransferase N [Persephonella
           marina EX-H1]
 gi|225644821|gb|ACO03007.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1]
          Length = 353

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/341 (37%), Positives = 197/341 (57%), Gaps = 27/341 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLL 90
           + R  QI KWIY + +  +  M+D+S+EVR+ L ++  +   E+V  E+ S DG+ K+L 
Sbjct: 23  KFRAKQIAKWIYNKKVNSYDEMTDLSKEVRNYLKENTKLNVLELVTFERSSQDGSIKFLW 82

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
           R      G  VE  +V+IPE+   TLCVS+QVGC++ C FC+T    L+RNLT  EI+ Q
Sbjct: 83  RLED---GHTVE--SVFIPERGHNTLCVSTQVGCAVGCKFCFTTKDGLIRNLTTAEIVDQ 137

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
            + ++  +G             P    +ISN+V MGMGEPL N++NVK+S+ I +D   L
Sbjct: 138 YIQSQIFVG-------------PE--NRISNVVYMGMGEPLANYENVKRSVQILTDDRML 182

Query: 211 SFSKRRITLSTSGFVPNIARVGEEIG---VMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
             S R+IT+S+SG +  I ++ ++     V LA+SL+A     R  ++PI+    LE L+
Sbjct: 183 GLSNRKITISSSGIIHQIKKMYDDPSFPQVRLAVSLNASDQKTRERIMPISETNSLEDLM 242

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGCE 325
                 P +    RI  EYV++K IND P DA  L +++       K+NLIPFNP+PG +
Sbjct: 243 KTLNRLP-VKTGFRIMLEYVLIKDINDRPEDAHRLARLIGKNKKRYKVNLIPFNPYPGSD 301

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +   +++ +  F + + +    + +R  +G DI AACGQL+
Sbjct: 302 FERPEKERVDQFHKILWQYNIGAFVRWSKGSDISAACGQLR 342


>gi|260063739|ref|YP_003196819.1| radical SAM enzyme, Cfr family protein [Robiginitalea biformata
           HTCC2501]
 gi|88783184|gb|EAR14357.1| radical SAM enzyme, Cfr family protein [Robiginitalea biformata
           HTCC2501]
          Length = 347

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 198/363 (54%), Gaps = 24/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +  + RE+L +     G+       R +Q+++W++ +G  DF  M+++S ++R  L 
Sbjct: 6   KKDIRALSREQLRDFFESRGMEA----FRGNQVYEWLWKKGAHDFDAMTNLSLDLREQLA 61

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F+I + E+   + S DGT K  +R     +     +E+V IP ++R T CVSSQVGCS
Sbjct: 62  AEFTINHIEVDRMQRSADGTVKNAVRLHDGLV-----VESVLIPTENRTTACVSSQVGCS 116

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T   K +RNL  +EI  QV++             I+       GR +SNIV M
Sbjct: 117 LDCKFCATARLKRMRNLNPDEIYDQVVV-------------IDRQSRLYFGRPLSNIVFM 163

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N+ N+ K++   +   GL  S RRIT+STSG    I R+ EE     LA+SLH
Sbjct: 164 GMGEPLMNYPNMMKAIDKITSEEGLGMSPRRITVSTSGVPKMIRRMAEEGPRFNLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  +  R+ ++P N  +PL+ L DA  ++       R+T+EYV+ +GIND P D   L+ 
Sbjct: 224 SAIDSTRSTIMPFNETFPLDDLRDAIVYWYE-KTGNRVTYEYVVWEGINDGPEDVAALLA 282

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             +  P K+NLI +NP     +  + +  +  +   ++ +G +  +R  RG DI AACGQ
Sbjct: 283 FCRAAPCKVNLIEYNPIGDDAFRQASEPALQAYINALEGAGITVTVRRSRGKDIDAACGQ 342

Query: 365 LKS 367
           L +
Sbjct: 343 LAN 345


>gi|313890464|ref|ZP_07824093.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313121166|gb|EFR44276.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 361

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 207/368 (56%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    +   I     + R +QIW W+Y + ++ F+ M++IS++   LLN
Sbjct: 2   KPSIYSLTRDEL----IDWAIANGQKKFRATQIWDWLYKKRVQSFEEMTNISKDFIALLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           + F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  EKFCLNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L + EI  Q++L +    D  G ++           ++S++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYF-DERGQDE-----------RVSHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYKNVMTFLRTINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +PLE L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNELRSSIMRINRSFPLEKLFTAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDILKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|257792840|ref|YP_003183446.1| radical SAM enzyme, Cfr family [Eggerthella lenta DSM 2243]
 gi|257476737|gb|ACV57057.1| radical SAM enzyme, Cfr family [Eggerthella lenta DSM 2243]
          Length = 353

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/358 (35%), Positives = 193/358 (53%), Gaps = 30/358 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           EL   + ++G P      R  Q+ +W+Y R    +  M+++   +R  L + F +  P +
Sbjct: 20  ELASVMKELGQPA----FRAQQLQEWLYQRHASSYDEMTNLPGSLRATLAERFPLTMPTV 75

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGCSLTCSFCYT 133
           VD +IS DGTRK+L+ F        + +ETV IP ++  R T+C S+Q GC + C+FC T
Sbjct: 76  VDRQISKDGTRKYLVEF-----DDGIRVETVGIPSRNGDRLTVCFSTQAGCPIACAFCAT 130

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G +   RNL   EI+ QVL+ +         ED+        G++++N V MG GEP  N
Sbjct: 131 GQEGFARNLIPGEIVDQVLIVQ---------EDM--------GKRVTNAVGMGQGEPFLN 173

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRN 252
           +DN   +L I +   GL    R I++ST G +P + R  GE     LA+SLHA    +R+
Sbjct: 174 YDNTMAALRILNHKKGLEIGARHISVSTCGILPGLERFSGEPEQFTLAVSLHAARQPIRD 233

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
           +++P   +Y L  L +A ++Y   +N RRIT EY+M++G+ND+P D   L K    +   
Sbjct: 234 LIMPNVARYKLPSLKEALQNYVAKTN-RRITLEYIMIEGVNDAPVDLKALQKFCSNLLCH 292

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           +NLIP N   G E+  S  + I  +   I + G  + +R  RG DI  ACGQLK+  K
Sbjct: 293 VNLIPINAIEGSEFQPSSPETINLWLSEISKKGTEATLRDSRGSDISGACGQLKNTFK 350


>gi|323490277|ref|ZP_08095492.1| ribosomal RNA large subunit methyltransferase N [Planococcus
           donghaensis MPA1U2]
 gi|323395947|gb|EGA88778.1| ribosomal RNA large subunit methyltransferase N [Planococcus
           donghaensis MPA1U2]
          Length = 357

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 218/377 (57%), Gaps = 28/377 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+  ++L+E  L+ G      + R  Q+W W+Y++ + +F  M+++S+E   LL 
Sbjct: 2   KNSIYGLTIDQLKEWFLENG----QKKYRAEQVWDWLYIKRVTEFAEMNNLSKECIQLLE 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F+I   +   ++ S DGT K+L +     +     IETV +  K   ++CV++QVGC+
Sbjct: 58  DNFAIRTLKETVKQESADGTIKFLFQMQDGNL-----IETVLMRFKYGNSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +G  K  R+L A EI+ Q++  ++   D    E+           ++S+IV+M
Sbjct: 113 IGCSFCASGLLKKSRDLNAGEIVEQIMQVQAHF-DTQQKEE-----------RVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ N+   L + +   GL+   R IT+STSG VP I    +E + V LAIS+H
Sbjct: 161 GIGEPFDNYTNLMDFLKVVNSQKGLAIGARHITVSTSGIVPKIYDYADEGLQVNLAISIH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR  ++ IN+ YP+E L+ +  +Y   SN RRITFEY++L+ +ND   +A  L K
Sbjct: 221 APTNELRTRIMKINKAYPIEKLMASIDYYLEKSN-RRITFEYILLRDVNDHVEEANQLAK 279

Query: 305 IL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +L  K   + +NLIP+N      +Y  S  + I  F + +K+ G +  +R  +G DI AA
Sbjct: 280 LLEDKRHLSYVNLIPYNSVDEHDQYQQSTPEAISAFYDALKKKGINCGVRHEQGADIDAA 339

Query: 362 CGQLKSLSKRIPKVPRQ 378
           CGQL+  SK+I K  ++
Sbjct: 340 CGQLR--SKQIKKDKKE 354


>gi|163786382|ref|ZP_02180830.1| hypothetical protein FBALC1_14392 [Flavobacteriales bacterium
           ALC-1]
 gi|159878242|gb|EDP72298.1| hypothetical protein FBALC1_14392 [Flavobacteriales bacterium
           ALC-1]
          Length = 346

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 205/367 (55%), Gaps = 24/367 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KK+ +  + +E+L +  +K G        R +Q+++W++ +    F+ M++IS E R +
Sbjct: 3   VKKKDIRALTKEQLRDFFVKQGDKA----FRGNQVYEWLWQKSAHSFEDMTNISLETRQM 58

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F I + ++   + S DGT K  +R     I     +E+V IP  +R T CVSSQVG
Sbjct: 59  LEANFVINHIKVDQMQRSSDGTIKNAVRLHDDLI-----VESVLIPTATRTTACVSSQVG 113

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL C FC T   K +RNL  +EI  QV+             D E  +  +  R +SNIV
Sbjct: 114 CSLDCKFCATARLKRMRNLNPDEIYDQVVAI-----------DNESRLYHN--RPLSNIV 160

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
            MGMGEPL N++NV K++   +   GL  S +RI +STSG    I ++ ++ +   LA+S
Sbjct: 161 FMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRIVVSTSGVPKMIKKMADDKVKFKLAVS 220

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+  +D+R  ++P N  +PL  L +A +++   +   RIT+EYV+  GIND  +D   L
Sbjct: 221 LHSAIDDVRTSIMPFNATFPLNDLREALQYWYA-ATKNRITYEYVVWDGINDKRKDVDAL 279

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           ++  K  P+K+NLI +NP    E+  ++ K +  +   ++ +  +  +R  RG DI AAC
Sbjct: 280 VEFCKFAPSKVNLIEYNPIDDGEFQQANSKALDMYVNVLEANNITVTVRRSRGKDIDAAC 339

Query: 363 GQLKSLS 369
           GQL + S
Sbjct: 340 GQLANKS 346


>gi|15644462|ref|NP_229514.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
           maritima MSB8]
 gi|81553682|sp|Q9X240|RLMN_THEMA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|4982292|gb|AAD36781.1|AE001811_1 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 343

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/363 (37%), Positives = 207/363 (57%), Gaps = 32/363 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+ +  EEL   +  +G+     R R  QI  W++ + + +F  M+++S++ R LL +
Sbjct: 2   KNLLDLSYEELVTEITNLGLE----RYRADQILDWVFDKKVNNFDEMTNLSKKHRALLKE 57

Query: 67  HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           HFSI + +++D+K+S  DGT K+L        G  +E   ++ P+  R T C+S+QVGC 
Sbjct: 58  HFSISFLKLLDKKVSRIDGTTKFLWELED---GNTIESVMLFHPD--RITACISTQVGCP 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG    VRNLT  EI+ Q+L            E  E        +KI N+V M
Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQIL----------SMEKEE-------KKKIGNVVYM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N++N  KS+ I +     +   RRIT+ST G    I ++ EE + V LA+SLH
Sbjct: 156 GMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N  R+ LVP+N+KY +E +++A + Y       R+T EYV+++GIND   DA  L +
Sbjct: 216 APTNFKRDQLVPLNKKYSIEEILNAVKIYQR-KTGNRVTIEYVLIRGINDEISDAKKLAE 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKD-IVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           IL+ +   +NLIP N  P  E L    ++ ++TF   +  +G  + IR  +G DI AACG
Sbjct: 275 ILRNMKVFVNLIPVN--PTVEGLRRPSRERLLTFKRILLENGIEAEIRREKGTDIEAACG 332

Query: 364 QLK 366
           QL+
Sbjct: 333 QLR 335


>gi|210617186|ref|ZP_03291453.1| hypothetical protein CLONEX_03675 [Clostridium nexile DSM 1787]
 gi|210149461|gb|EEA80470.1| hypothetical protein CLONEX_03675 [Clostridium nexile DSM 1787]
          Length = 345

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 202/365 (55%), Gaps = 29/365 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+ +     EEL++ +  +G        R  Q+++W++V+    F+ M+++S+ +R  
Sbjct: 1   MEKKDIRSYTFEELKQEMEHLGEKS----FRAKQVYEWLHVKLADSFEEMTNLSKALREK 56

Query: 64  LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L+  + I   ++++ + S  DGT K+L      C+     +E+V +  K   ++C+SSQV
Sbjct: 57  LDAAYEIAPVKMLERQESKLDGTNKFLF-----CLQDGHVVESVLMKYKHGNSVCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L RNL A E+L Q+   + + G+                 ++SN+
Sbjct: 112 GCRMGCKFCASTIGGLERNLKASEMLGQIYQIQKISGE-----------------RVSNV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEP+ N+DN  K + I +D  GL  S+R IT+ST G VPN+ R+ EE + + LA+
Sbjct: 155 VVMGTGEPMDNYDNFLKFIHILTDEHGLHISQRNITVSTCGIVPNMKRLAEEKLQITLAL 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH  + + R +L+P+  KY L  ++ AC +Y      RR+TFEY ++ G+ND   DA  
Sbjct: 215 SLHGSTQEKRKVLMPVANKYELSEVLAACDYYFE-KTGRRVTFEYSLVHGVNDKEEDAAE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           LI ILK     +NLIP NP     +    +K+ + F   +++SG +  IR   G DI  A
Sbjct: 274 LIHILKHRNCHLNLIPVNPIKERTFEKPSKKNAMNFKNKLEKSGINVTIRREMGSDIDGA 333

Query: 362 CGQLK 366
           CGQL+
Sbjct: 334 CGQLR 338


>gi|148989849|ref|ZP_01821143.1| hypothetical protein CGSSp6BS73_01643 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147924791|gb|EDK75875.1| hypothetical protein CGSSp6BS73_01643 [Streptococcus pneumoniae
           SP6-BS73]
          Length = 361

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 209/368 (56%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    +    E            ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAERGQDE------------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV       +D  G++   R I +STSG    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHIMISTSGLAHKIRDFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|124007524|ref|ZP_01692229.1| radical SAM enzyme, Cfr family [Microscilla marina ATCC 23134]
 gi|123987007|gb|EAY26763.1| radical SAM enzyme, Cfr family [Microscilla marina ATCC 23134]
          Length = 350

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 187/335 (55%), Gaps = 22/335 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI+ W++ +    F+ M+++S ++R +L  HF I    +  ++IS D T K   + 
Sbjct: 30  FRAKQIYAWLWQKSANSFEEMTNLSLKLREMLQAHFDITALTVDQQQISNDQTIKSTFKL 89

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               I     IE V IP K R T CVSSQVGCSLTC FC TG     RNL   EI  QV+
Sbjct: 90  YDNHI-----IEGVLIPAKDRMTACVSSQVGCSLTCKFCATGYMSRKRNLEPGEIYDQVV 144

Query: 153 -LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            +AR    ++               + ++NIV MGMGEPL N+ NV KS+   +   GL+
Sbjct: 145 AIARQAEENYE--------------QPLTNIVYMGMGEPLLNYANVLKSVEHITSPEGLN 190

Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            S +RIT+ST+G    I ++G+ E+   LA+SLHA +++ RN ++PIN    L  L DA 
Sbjct: 191 MSPKRITISTAGIAKMIRKLGDDEVKFNLALSLHAANDEKRNEIMPINESNTLVALRDAL 250

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           ++Y   +   R+T+EY++    NDS +DA  L +  + +P K+N+I +NP    +++ + 
Sbjct: 251 KYYFQKTK-NRVTYEYIVFHNFNDSLKDAEELYRFTRHLPCKVNIIEYNPIAEADFVNTK 309

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +  +  F++ ++  G    +R  RG DI AACGQL
Sbjct: 310 EDKLAKFAKYLEGKGVIVNVRRSRGKDIDAACGQL 344


>gi|224023722|ref|ZP_03642088.1| hypothetical protein BACCOPRO_00438 [Bacteroides coprophilus DSM
           18228]
 gi|224016944|gb|EEF74956.1| hypothetical protein BACCOPRO_00438 [Bacteroides coprophilus DSM
           18228]
          Length = 350

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 197/369 (53%), Gaps = 29/369 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+G   +EL + +L +G+P    +    QI  W+Y R +     M+++S + R  L 
Sbjct: 5   KAPLLGKTLDELTQIVLDLGMP----KFTAGQIASWLYGRKVASIDEMTNLSVKNRERLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + + +     V E  S DGT K+L R P     G   +E+VYIP+  R TLCVSSQVGC 
Sbjct: 61  ECYEVGATAPVHEMRSVDGTVKYLFRTPE----GDY-VESVYIPDADRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LTA +IL Q+                    IP     ++N+V M
Sbjct: 116 MNCKFCMTGKQGYTNSLTAAQILNQIY------------------SIPERD-TLTNVVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP  N D V ++L I + S G ++S +RIT+S+ G    + R  +E    LAISLH+
Sbjct: 157 GMGEPFDNLDEVLRALEILTASYGYAWSPKRITVSSVGLRKGLRRFLDESDCHLAISLHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  ++D  R Y   S  RR++FEY++ KG+NDS   A  L+++
Sbjct: 217 PFPAQRQELMPAEKAFSIVEIVDILRQYD-FSKQRRLSFEYIVFKGVNDSLIYAKELVRL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  ++NLI F+  P  +   +D + ++ F + + + G  + IR  RG DI AACG L
Sbjct: 276 LRGLDCRMNLIRFHAIPNVDLEGADMETMLAFRDYLTQHGLFATIRASRGEDIFAACGML 335

Query: 366 KSLSKRIPK 374
            +  ++  K
Sbjct: 336 STAKQQANK 344


>gi|332976466|gb|EGK13312.1| cfr family radical SAM enzyme [Desmospora sp. 8437]
          Length = 350

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/337 (36%), Positives = 192/337 (56%), Gaps = 23/337 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR- 91
            R  Q+  W+YV+ +  F  M+++S+ +R  L + F +   E +  + S DGT K+L + 
Sbjct: 25  FRADQVMNWLYVKRVPSFADMTNLSRGLRERLERDFQLKPLETITVRQSADGTIKFLFQL 84

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
           F    I      ETV +      ++CV++QVGC + C+FC +    L R+L A E++ QV
Sbjct: 85  FDGHAI------ETVIMRHNYGNSVCVTTQVGCRVGCTFCASTLGGLKRDLKAGEVVAQV 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L A+  L  +              G ++ ++V+MG+GEP  N+D   + + +  D  GL+
Sbjct: 139 LEAQRYLDRW--------------GERVHSVVIMGIGEPFENYDASVQFMRVIQDEKGLN 184

Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            ++RRIT+STSG VP+I R  EE + V LAISLHA +  LR  L+P++ +YPLE L+ AC
Sbjct: 185 LAQRRITVSTSGIVPSIYRFAEEGLQVGLAISLHAPNQALRKRLMPVSYRYPLEELLAAC 244

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R+Y      RRIT+EY ++ G ND+P  A  L ++L+G  + INLIP N  P   Y  + 
Sbjct: 245 RYYVQ-KTGRRITYEYALIGGKNDAPEHAHELGRLLEGSGSLINLIPVNHVPERNYTRTP 303

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +  I  F + ++    ++ IR   G DI AACGQL++
Sbjct: 304 RNRIFKFRDILQSYNLNTTIRREHGSDIEAACGQLRA 340


>gi|149003387|ref|ZP_01828276.1| hypothetical protein CGSSp14BS69_05262 [Streptococcus pneumoniae
           SP14-BS69]
 gi|303255819|ref|ZP_07341860.1| hypothetical protein CGSSpBS455_10019 [Streptococcus pneumoniae
           BS455]
 gi|303260232|ref|ZP_07346203.1| hypothetical protein CGSSp9vBS293_03308 [Streptococcus pneumoniae
           SP-BS293]
 gi|303261439|ref|ZP_07347387.1| hypothetical protein CGSSp14BS292_08890 [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264106|ref|ZP_07350027.1| hypothetical protein CGSSpBS397_05867 [Streptococcus pneumoniae
           BS397]
 gi|303266283|ref|ZP_07352174.1| hypothetical protein CGSSpBS457_03820 [Streptococcus pneumoniae
           BS457]
 gi|303268722|ref|ZP_07354512.1| hypothetical protein CGSSpBS458_06844 [Streptococcus pneumoniae
           BS458]
 gi|147758570|gb|EDK65568.1| hypothetical protein CGSSp14BS69_05262 [Streptococcus pneumoniae
           SP14-BS69]
 gi|302597203|gb|EFL64308.1| hypothetical protein CGSSpBS455_10019 [Streptococcus pneumoniae
           BS455]
 gi|302637573|gb|EFL68060.1| hypothetical protein CGSSp14BS292_08890 [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638556|gb|EFL69020.1| hypothetical protein CGSSpBS293_03308 [Streptococcus pneumoniae
           SP-BS293]
 gi|302641782|gb|EFL72139.1| hypothetical protein CGSSpBS458_06844 [Streptococcus pneumoniae
           BS458]
 gi|302644213|gb|EFL74469.1| hypothetical protein CGSSpBS457_03820 [Streptococcus pneumoniae
           BS457]
 gi|302646511|gb|EFL76737.1| hypothetical protein CGSSpBS397_05867 [Streptococcus pneumoniae
           BS397]
          Length = 361

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 212/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  ++ + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV       +D  G++   R IT+S SG    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|227824650|ref|ZP_03989482.1| ribosomal RNA large subunit methyltransferase N [Acidaminococcus
           sp. D21]
 gi|226905149|gb|EEH91067.1| ribosomal RNA large subunit methyltransferase N [Acidaminococcus
           sp. D21]
          Length = 352

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 203/370 (54%), Gaps = 32/370 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+ ++G+  E++++  L +G+     + R  Q+++WIY +G   F+ M+++S+E R L
Sbjct: 1   MTKKEILGLTLEQMQDEFLALGLK----KFRAEQVFRWIYEKGATTFEEMTNLSKENRSL 56

Query: 64  LNQHFSIIYP--EIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           L   +SI+    +++    S D  T K LL      +     +ETV +      + C+SS
Sbjct: 57  LEGTYSILSGAVKVLRTYDSADRLTHKVLL-----GLSDGASVETVLMHHDYGYSACLSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C+FC +G    +RNLTA EIL Q+                + +++P  G ++S
Sbjct: 112 QVGCAMNCTFCASGLHGFMRNLTAGEILAQLYY-------------FDHVLLPK-GERVS 157

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGV 237
            IV+MG GEP+ N DNV  +L +     G   S R +T+ST G VP I    R G  I  
Sbjct: 158 RIVIMGSGEPMLNLDNVLAALDLMHHDKGQCISYRNMTISTCGIVPGIEEMTRQGRTIN- 216

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA +  LR+ L+PIN KYP   +IDA   Y  + N R++ +EY++L GIND   
Sbjct: 217 -LAVSLHAATGALRDRLMPINGKYPFPEVIDAASRYEKM-NGRQVMYEYILLAGINDREE 274

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
           DA  L + L G    +NLIP NP P   +   + +D+  F + +K+   +  +R   G D
Sbjct: 275 DARALAEALSGKECVVNLIPANPVPEKGFRRPEDRDVDRFFQYLKKRHINVTVRKEMGKD 334

Query: 358 ILAACGQLKS 367
           I AACGQL++
Sbjct: 335 INAACGQLRA 344


>gi|167757025|ref|ZP_02429152.1| hypothetical protein CLORAM_02574 [Clostridium ramosum DSM 1402]
 gi|237735905|ref|ZP_04566386.1| ribosomal RNA large subunit methyltransferase N [Mollicutes
           bacterium D7]
 gi|167703200|gb|EDS17779.1| hypothetical protein CLORAM_02574 [Clostridium ramosum DSM 1402]
 gi|229381650|gb|EEO31741.1| ribosomal RNA large subunit methyltransferase N [Coprobacillus sp.
           D7]
          Length = 342

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 194/336 (57%), Gaps = 24/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q++ W+Y +  R F  MSD+S+++R+ L   FS+   +I ++++S DGT K+L   
Sbjct: 24  FRAKQVFSWLYQKDARSFDDMSDLSKDLRNQLKVEFSLDVLKIKEKQVSRDGTIKYLFEL 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               + G + IE+V +      +LCV+SQ+GC++ C+FC +G  +  R+LT  EI+ Q++
Sbjct: 84  ----LDGSL-IESVLMIHDYGKSLCVTSQIGCNMKCTFCASGLLRKQRDLTPGEIVAQII 138

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                             V   + +++S++V+MG GEP  N+DNV + + I +   GL+ 
Sbjct: 139 -----------------KVQQDIDQRVSHVVVMGTGEPFDNYDNVMEFVRIINHPHGLAI 181

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+ST G +  I R  EE I   LAISLHA ++++R+ L+PIN+ +P++ L +A  
Sbjct: 182 GARHITISTCGLIKGIKRYSEEGIQTNLAISLHAANDEIRDELMPINKVHPMDDLREAIS 241

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y   +N RR+TFEY+MLKG+ND    A  L   L+G+ A +NLIP+N      Y  SD+
Sbjct: 242 EYIDKTN-RRVTFEYIMLKGVNDDIVYARQLAHYLRGLNAYVNLIPYNSVDEHGYQPSDK 300

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           + +  F   + R   +  +R   G DI  ACGQL++
Sbjct: 301 ETVEIFKNELLRLHINVTLRKEHGRDIDGACGQLRA 336


>gi|326334975|ref|ZP_08201175.1| cfr family radical SAM enzyme [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692780|gb|EGD34719.1| cfr family radical SAM enzyme [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 354

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 211/369 (57%), Gaps = 27/369 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
            +F+K   +  + +EEL+   L  G        R SQ+++W++ +G   F  M+++S+E 
Sbjct: 9   FHFMK--DIRALKKEELQAFFLAHG----EKAFRASQVYEWLWTKGAHSFDQMTNLSKET 62

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R LL +HF I + ++   + S DGT K  +R     +   + +E+V IP  +R T C+SS
Sbjct: 63  RTLLGEHFVINHIKVDTMQRSEDGTIKNAVR-----LHDGLYVESVLIPTDTRITACISS 117

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL C+FC T   K +RNL+ +EI  QVL              I+        R + 
Sbjct: 118 QVGCSLNCTFCATARLKRMRNLSPDEIFDQVLT-------------IDQQSRLYYARPLR 164

Query: 181 NIVMMGMGEPLCNFDNVKKSLS-IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           NIV MGMGEPL N+ NV K++  I S+  GL FS +RIT+STSG    I ++ ++ +   
Sbjct: 165 NIVFMGMGEPLMNYPNVIKAIERITSEKEGLGFSPKRITVSTSGISKLIRKMADDRVKFK 224

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLH+     RN ++P    +PL  L +A +++   + +R IT+EYV+ KG+ND+ +D
Sbjct: 225 LAVSLHSAIEQTRNCIMPWTVNFPLTELREALQYWYQHTKSR-ITYEYVVWKGVNDTLKD 283

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
              L+   +  P K+NLI +NP     +L +D+K ++ + + ++ +G ++ IR  RG DI
Sbjct: 284 IEALVAFCRFAPCKVNLIEYNPIDDGAFLQADEKILLLYKKKLEEAGITTTIRYSRGKDI 343

Query: 359 LAACGQLKS 367
            AACGQL +
Sbjct: 344 DAACGQLAN 352


>gi|160945217|ref|ZP_02092443.1| hypothetical protein FAEPRAM212_02736 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442948|gb|EDP19953.1| hypothetical protein FAEPRAM212_02736 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105558|emb|CBL03102.1| 23S rRNA m(2)A-2503 methyltransferase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 346

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/364 (34%), Positives = 199/364 (54%), Gaps = 30/364 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  +  +   EL + L  +G P      R  QI+ W++ + + +F  M+D  + +   L
Sbjct: 3   QKRCISSLTLAELTDELKALGQPG----FRAKQIFHWVHQKLVTEFSAMTDQPKTLLAKL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            + F I  P+I   + + DGT K+LLR     CI      ETV +      T+CVS+QVG
Sbjct: 59  EETFYIAAPQIERRQEAKDGTVKYLLRMADGNCI------ETVVMRYHYGNTVCVSTQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +     VRNL A EI  ++  A+                   +G +IS+IV
Sbjct: 113 CRMGCRFCASTQAGRVRNLEAGEICSEIYTAQK-----------------DIGERISHIV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEPL NFD V + L   +   G++   R I+LST G VP I ++ E+ + + L+IS
Sbjct: 156 LMGIGEPLDNFDEVMRFLENITSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSIS 215

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N +R+ ++P+N  YP+E LI   R Y   +  RR++FEY M++G+NDS   A  L
Sbjct: 216 LHAPTNQIRSSMMPVNDAYPVEQLIQTVRRYQE-TTGRRVSFEYSMVRGVNDSDVCAKQL 274

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +++G+ A +NLIP NP  G  Y  +D  ++  F + ++  G ++ +R   G +I AAC
Sbjct: 275 ADLIRGMGAHVNLIPINPVDGSPYSATDAANVRRFQQKLESLGVNATVRRRLGSEISAAC 334

Query: 363 GQLK 366
           GQL+
Sbjct: 335 GQLR 338


>gi|293365659|ref|ZP_06612368.1| cfr family radical SAM enzyme [Streptococcus oralis ATCC 35037]
 gi|291316027|gb|EFE56471.1| cfr family radical SAM enzyme [Streptococcus oralis ATCC 35037]
          Length = 349

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 202/348 (58%), Gaps = 26/348 (7%)

Query: 26  IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCD 83
           + Q   + R  QIW+W+Y + ++ F+ M+++S+++   LN  F +  +   IV E  S D
Sbjct: 6   LEQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQRIVQE--SAD 63

Query: 84  GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
           GT K+L   P   +     IETV + +    ++CV++QVGC++ C+FC +G  K  R+L 
Sbjct: 64  GTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLN 118

Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
             EI+ Q++L +    D  G ++           ++S+IV+MG+GEP  N++NV   +  
Sbjct: 119 NGEIVAQIMLVQKYF-DERGQDE-----------RVSHIVVMGIGEPFDNYNNVLNFVRT 166

Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYP 262
            +D  G++   R IT+STSG    I     E + V LA+SLHA +N+LR+ ++ INR +P
Sbjct: 167 INDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFP 226

Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNP 320
           +E L  A  +Y   +N RR+TFEY+ML  +ND    AL L ++LK I   + +NLIP+NP
Sbjct: 227 IEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNP 285

Query: 321 WPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
                +Y  S ++ ++ F + +K+ G +  +R   G DI AACGQL+S
Sbjct: 286 VSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAACGQLRS 333


>gi|229828531|ref|ZP_04454600.1| hypothetical protein GCWU000342_00595 [Shuttleworthia satelles DSM
           14600]
 gi|229793125|gb|EEP29239.1| hypothetical protein GCWU000342_00595 [Shuttleworthia satelles DSM
           14600]
          Length = 392

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 189/337 (56%), Gaps = 25/337 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLL 90
           + R  Q+++WI+ R   D+  MS++S+++R  L +   +   +  D +IS  DGTRK+L 
Sbjct: 62  KFRARQLYEWIHRRQAADWDEMSNLSRDLRGRLMREADLTVLQEADCQISRLDGTRKYLF 121

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
                 +     +E+V +P     ++C+SSQVGC + C FC +     +RNLT  E+L Q
Sbjct: 122 -----ALSDGNMVESVLMPYHHGNSVCISSQVGCRMGCRFCASTIDGWLRNLTPAEMLDQ 176

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           +                   +      ++SN+V+MG GEPL NFDNV K + + SD  GL
Sbjct: 177 IY-----------------RIQRDSKERVSNLVLMGTGEPLDNFDNVVKLIGLVSDENGL 219

Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           + S+R IT+ST G VP I  + +  + + LAISLHA S + R  L+PI  +Y L+ ++DA
Sbjct: 220 NISQRNITVSTCGIVPRIRELADLNLSITLAISLHASSQETRRKLMPIAERYDLKEILDA 279

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           CR+Y   +  RR+TFEY ++ G+NDS  DA  L  +L  +   +NLIP NP     +  S
Sbjct: 280 CRYYFSRT-GRRLTFEYALVAGVNDSREDAARLAGLLGDLNCHVNLIPVNPIKERNFHQS 338

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           D++ ++ F   +++ G +  IR   G DI  ACGQL+
Sbjct: 339 DRRALLAFRTQLEKYGVNVTIRREMGRDIDGACGQLR 375


>gi|269123374|ref|YP_003305951.1| radical SAM enzyme, Cfr family [Streptobacillus moniliformis DSM
           12112]
 gi|268314700|gb|ACZ01074.1| radical SAM enzyme, Cfr family [Streptobacillus moniliformis DSM
           12112]
          Length = 353

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 197/361 (54%), Gaps = 26/361 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            ++ +  +ELE+  L++G+     +    Q+++W++ + + +F   S+IS+E R LL + 
Sbjct: 5   DILDLSLDELEKMFLELGLK----KFNALQVYQWLHKKLVFNFDEFSNISKETRELLKEK 60

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F I   + V  + S D  T K+L   P + +     IE+V +  K+R ++CVSSQVGC L
Sbjct: 61  FEIGTLKYVTHQTSKDKETVKFLFSLPGKKL-----IESVLLKYKNRYSICVSSQVGCPL 115

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG  K  +NL A EIL+Q    ++ L +                 KISN+V MG
Sbjct: 116 KCDFCATGMMKFEKNLKASEILMQFYYLQNYLKE--------------KNDKISNVVYMG 161

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHA 245
           MGEP  N+D V KS++I +   G +FSKR  T+STSG +  I + V ++  V LAISLH+
Sbjct: 162 MGEPFLNYDAVNKSINILNSKEGQAFSKRNFTISTSGLINEIDKFVEDQKQVGLAISLHS 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V+   R+ L+PIN+  PL+ L ++  +Y       RITFEY+++   N    DA+ L+K 
Sbjct: 222 VNEKRRSELMPINKINPLDKLRESLLNYQN-KTKNRITFEYILIDDFNCEKEDAVALVKF 280

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++     +NLIP+N   G  Y     +    F   +     +  +R  +G DI AACGQL
Sbjct: 281 MRSFNHLVNLIPYNKVAGKPYKTPSLQKQKEFYNHLLSHKINVTLRETKGEDIQAACGQL 340

Query: 366 K 366
           K
Sbjct: 341 K 341


>gi|194694544|gb|ACF81356.1| unknown [Zea mays]
          Length = 266

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 112/257 (43%), Positives = 157/257 (61%), Gaps = 14/257 (5%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P + R T+CVSSQVGC++ C FC+TG   L ++L+  EI+ Q + AR L  D  G     
Sbjct: 3   PVRGRTTICVSSQVGCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDELG----- 57

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
                     I+N+V MGMGEP  N DNV K+ +I  D  GL FS R++T+STSG VP +
Sbjct: 58  ---------SINNVVFMGMGEPFHNIDNVIKASAIMVDEQGLHFSPRKVTVSTSGLVPQL 108

Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
            R  +E    LA+SL+A ++++RN ++PINRKY L +L+   R    L   + + FEYVM
Sbjct: 109 KRFLQESNCSLAVSLNATTDEVRNWIMPINRKYNLNLLLGTLREELNLRQKQIVLFEYVM 168

Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348
           L G+NDS  DA  LI++++GIP KINLI FNP  G ++  +    I+ F   + + G + 
Sbjct: 169 LSGVNDSMDDAKRLIELVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLTV 228

Query: 349 PIRTPRGLDILAACGQL 365
            +R  RG D +AACGQL
Sbjct: 229 FVRLSRGDDQMAACGQL 245


>gi|313113578|ref|ZP_07799166.1| radical SAM enzyme, Cfr family [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624093|gb|EFQ07460.1| radical SAM enzyme, Cfr family [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 346

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 197/353 (55%), Gaps = 30/353 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           EL   L  +G P      R  QI+ W++ + + +F  M+D  + +   L + F I  P+I
Sbjct: 14  ELTAELKAMGQPG----FRAKQIFHWVHQKLVTEFSAMTDQPKTLLAKLEESFYIAAPKI 69

Query: 76  VDEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
              + + DGT K+LLR     CI      ETV +      T+CVS+QVGC + C FC + 
Sbjct: 70  ERRQEAKDGTVKYLLRMADGNCI------ETVVMRYHYGNTVCVSTQVGCRMGCRFCAST 123

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
               VR+L A EI  ++  A+                   +G +IS+IV+MG+GEPL NF
Sbjct: 124 QAGRVRDLEAGEICSEIYTAQK-----------------DIGERISHIVLMGIGEPLDNF 166

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
           D V K L   +   G++   R I+LST G VP I ++ E+ + + L++SLHA +N++R+ 
Sbjct: 167 DEVMKFLENITSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSVSLHAPNNEIRSG 226

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           ++P+N  YP+E+L+ A R Y   +  RR++FEY M++G+NDS   A  L  +++G+ A +
Sbjct: 227 MMPVNDAYPVEVLMQAVRRYQD-TTGRRVSFEYSMVRGVNDSDACARQLANLIRGMGAHV 285

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           NLIP NP  G  Y  +D  ++  F + ++  G ++ +R   G +I AACGQL+
Sbjct: 286 NLIPINPVDGSPYSATDAANVHRFQQKLESLGVNATVRRRLGSEISAACGQLR 338


>gi|224538713|ref|ZP_03679252.1| hypothetical protein BACCELL_03607 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519681|gb|EEF88786.1| hypothetical protein BACCELL_03607 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 346

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 126/350 (36%), Positives = 186/350 (53%), Gaps = 29/350 (8%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
           +E + ++G+P         QI  W+Y + +     M+++S + R LL   + +     V+
Sbjct: 15  QEVVKRLGMPG----FSAKQIASWLYDKKVNSIDDMTNLSLKHRDLLKDVYEVGAEAPVE 70

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
              S DGT K+L R      G    +E VYIP++ R TLCVSSQVGC + C FC TG Q 
Sbjct: 71  AMRSTDGTVKYLYR-----AGDKNFVEAVYIPDEDRATLCVSSQVGCKMNCKFCMTGKQG 125

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
              NLTA +I+ Q+          P  +            K++N+VMMGMGEPL N D V
Sbjct: 126 FSANLTANQIINQI-------NSLPERD------------KLTNVVMMGMGEPLDNLDEV 166

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257
            K+L I + S G  +S +RITLST G      R  EE    LA+SLH+     R  L+P 
Sbjct: 167 LKALEIMTASYGYGWSPKRITLSTVGLRKGFQRFIEESECHLAVSLHSPVALQRRELMPA 226

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
            + + +  ++D  ++Y   S  RR++FEY++ KG+NDS   A  L+K+L+G+  +INLI 
Sbjct: 227 EKSFSITEMVDLLKNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELLKLLRGLDCRINLIR 285

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F+  PG +   +D + +    + +   G  + IR  RG DI AACG L +
Sbjct: 286 FHAIPGVDLEGADMETMTKLRDYLTSHGLFTTIRASRGEDIFAACGMLST 335


>gi|282890654|ref|ZP_06299177.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499651|gb|EFB41947.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 350

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 193/362 (53%), Gaps = 27/362 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
                M  EEL+  L  +     H +    Q+  W+Y +GI D+  M++IS +++ LL  
Sbjct: 2   HQFFEMTEEELKTLLTSLDQKPFHAK----QLIDWVYGKGIIDWNEMTNISTDLKKLLQS 57

Query: 67  HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             S+ + ++V  K S D  T K+L R     +     +E+V I    R T+CVSSQVGC 
Sbjct: 58  QISLSHLQLVHVKPSADLETYKFLWRLKDNKL-----VESVLICSGDRRTVCVSSQVGCP 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
             C+FC +G Q   RNL   EI+ QV L    L D                 ++S++V M
Sbjct: 113 AKCAFCASGKQGFFRNLRPHEIVEQVFLINQWLKD--------------KNERVSHVVYM 158

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
           GMGEPL N+D V KS+ + S+   L+ S+RRIT+ST G V  I R+  EE+ V L +SLH
Sbjct: 159 GMGEPLKNYDPVIKSIRLLSNPELLNLSQRRITVSTVGIVEGIKRLSREELKVSLVLSLH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +  +R  ++P  RKYPL+ +++A   Y  L+  R ITFEY ++ GIND P  A  L  
Sbjct: 219 APNQHIRQKIIPYARKYPLDAIMEAMDEYAKLTK-RDITFEYTLIAGINDHPDHAFELTH 277

Query: 305 ILKGIPA-KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +L G     +NLIP+NP PG      ++K I  F   +  +   +  R  +G DI AACG
Sbjct: 278 LLHGKSQFTVNLIPYNPVPGLRLKRPEKKAIKQFRAVLFGAKVVNTCRYTKGDDIAAACG 337

Query: 364 QL 365
           QL
Sbjct: 338 QL 339


>gi|111658342|ref|ZP_01409030.1| hypothetical protein SpneT_02000482 [Streptococcus pneumoniae
           TIGR4]
          Length = 349

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 202/348 (58%), Gaps = 26/348 (7%)

Query: 26  IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCD 83
           + Q   + R  QIW+W+Y + ++ F+ M+++S+++   LN  F +  +   IV E  S D
Sbjct: 6   LEQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQRIVQE--SAD 63

Query: 84  GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
           GT K+L   P   +     IETV + +    ++CV++QVGC++ C+FC +G  K  R+L 
Sbjct: 64  GTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLN 118

Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
             EI+ Q++L +    D  G ++           +IS+IV+MG+GEP  N++NV      
Sbjct: 119 NGEIVAQIMLVQKYF-DERGQDE-----------RISHIVVMGIGEPFDNYNNVLNFFRT 166

Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYP 262
            +D  G++   R IT+STSG    I    +E + V LA+SLHA +N+LR+ ++ INR +P
Sbjct: 167 INDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIMKINRAFP 226

Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNP 320
           +E L  A  +Y   +N RR+TFEY+ML  +ND    AL L ++LK I   + +NLIP+NP
Sbjct: 227 IEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALELTELLKNIKKLSYVNLIPYNP 285

Query: 321 WPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
                +Y  S ++ ++ F + +K+ G +  +R   G DI AACGQL+S
Sbjct: 286 VSEHDQYSRSPKECVLAFYDTLKKKGVNCVVRQEHGTDIDAACGQLRS 333


>gi|312892339|ref|ZP_07751834.1| 23S rRNA m(2)A-2503 methyltransferase [Mucilaginibacter paludis DSM
           18603]
 gi|311295123|gb|EFQ72297.1| 23S rRNA m(2)A-2503 methyltransferase [Mucilaginibacter paludis DSM
           18603]
          Length = 350

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/350 (35%), Positives = 194/350 (55%), Gaps = 24/350 (6%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78
           EAL K+ +       R  Q+++W++ +    F  MS++S+E+R  L + F+I   ++   
Sbjct: 14  EALQKLFLELGEKSFRAKQVYEWLWKKSCFSFNEMSNLSKELRQKLEEQFTINNVKVNTS 73

Query: 79  KISCDGTRK--WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
           + S D T K  ++L        G + IE V IP   R T CVSSQVGCSLTC FC TG  
Sbjct: 74  QFSADKTIKNSFILH------DGHL-IEGVLIPADDRMTACVSSQVGCSLTCKFCATGYM 126

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
           +  RNL  +EI  QV+L             I+     +    ++NIV MGMGEPL N+ N
Sbjct: 127 ERKRNLNPDEIYDQVVL-------------IDQQARQNYDHHLTNIVYMGMGEPLLNYAN 173

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255
           V KS+   +   GL+ + +RIT+ST+G    I ++G++ +   LA+SLHA ++  RN ++
Sbjct: 174 VLKSIERITAEDGLNMAAKRITVSTAGIAKMIKKLGDDQVKFNLALSLHAANDAKRNEIM 233

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
           PIN +  L+ L +A ++Y   +    +T+EY++    ND  +DA+ L    K IP K+N+
Sbjct: 234 PINEQNSLKALAEALKYYYAKT-KNPVTYEYIVFNDFNDEIQDAVELAAFCKHIPCKVNI 292

Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           I +NP     Y  +D   I  F++ +++   ++ +R  RG DI AACGQL
Sbjct: 293 IEYNPISFASYTNADVDKIEAFADYLRKQDINTNVRRSRGKDIDAACGQL 342


>gi|304382166|ref|ZP_07364677.1| cfr family radical SAM enzyme [Prevotella marshii DSM 16973]
 gi|304336764|gb|EFM02989.1| cfr family radical SAM enzyme [Prevotella marshii DSM 16973]
          Length = 346

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 198/370 (53%), Gaps = 35/370 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+ L+GM +  L E  + +G+P    R    Q+ KW+Y R +     M+DIS+  R  L
Sbjct: 4   EKKPLLGMTQVALTETAVALGMPAFTGR----QMAKWLYSRHVSSIAEMTDISKAHRERL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFP---ARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             H+ I     VD + S DGT K+L  FP    RCI      ETVYIP+K R TLCVS Q
Sbjct: 60  GMHYCIGNHAPVDCQRSVDGTVKYL--FPTLDGRCI------ETVYIPDKERATLCVSCQ 111

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC TG Q    NLT  +IL Q+          P  E             ++N
Sbjct: 112 VGCKMNCLFCQTGKQGFEGNLTVCDILNQIY-------SLPERE------------TLTN 152

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MG GEP+ N DNV ++  I +   G ++S +RIT+S+ G    + R  +E    +A+
Sbjct: 153 IVFMGQGEPMDNLDNVLQATEILTAPYGYAWSPKRITVSSVGVRGRLKRFLDESECHVAV 212

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           S+H+   + R  L+P  R   +  + D  R Y   S+ RR++FEY++  G+ND+P  A  
Sbjct: 213 SMHSPFPEQRAQLMPAERSMSITEIADLLRQY-DFSHQRRLSFEYIVFGGLNDTPAHAKA 271

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +I++L+G+  ++NLI F+P P      ++++ +  F + + R G  + IR  RG DI AA
Sbjct: 272 IIRLLQGLDCRVNLITFHPIPNISLHGANRETMERFRDELTRHGVFTTIRASRGQDIFAA 331

Query: 362 CGQLKSLSKR 371
           CG L +  ++
Sbjct: 332 CGLLSTAKQK 341


>gi|282879497|ref|ZP_06288231.1| radical SAM enzyme, Cfr family [Prevotella timonensis CRIS 5C-B1]
 gi|281306644|gb|EFA98670.1| radical SAM enzyme, Cfr family [Prevotella timonensis CRIS 5C-B1]
          Length = 350

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 199/366 (54%), Gaps = 29/366 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+GM   EL+E +  + +P         QI KW+Y++ +     M+++S+  R +L 
Sbjct: 10  KKKLMGMTLSELQEVVHHLNMPT----FTAGQIAKWLYLQQVTSIDEMTNLSKNNRQILQ 65

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I   + +D + S DGT K+L  FP     G + +ETVYIP++ R TLCVSSQVGC 
Sbjct: 66  ESFEIGCMKPLDAQYSKDGTIKYL--FPT--ASGNL-VETVYIPDQDRATLCVSSQVGCK 120

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLT  +IL Q+          P  E            K++NIV M
Sbjct: 121 MNCLFCQTGKQGFEGNLTYTDILNQIY-------SLPERE------------KLTNIVFM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DNV ++  I +   G ++S +RIT+S+ G    + R  +E    +AISLH+
Sbjct: 162 GQGEPMDNIDNVLRATQILTAPYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAISLHS 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              + R  L+P  +  P++ +++  R Y   ++ RR++FEY++  G NDS R A  ++++
Sbjct: 222 AIPEQRRELMPAEKAMPIQEIVELLREY-DFAHQRRLSFEYIVFDGENDSIRHAQKVVEL 280

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  ++NLI F+  P      +D   +  F + +   G  + IR  RG DI AACG L
Sbjct: 281 LRGLDCRVNLIRFHQIPNVSLRGTDTATMERFRDYLTSHGIFTTIRASRGQDIFAACGLL 340

Query: 366 KSLSKR 371
            +  K+
Sbjct: 341 STAKKK 346


>gi|229916075|ref|YP_002884721.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
 gi|229467504|gb|ACQ69276.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
          Length = 353

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 211/366 (57%), Gaps = 27/366 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+  ++L     + G    H R    Q+W  +Y+  ++    ++ +  EVR  L 
Sbjct: 2   KSSIYGLTFDQLTNECTEAGYGAFHAR----QVWDSLYIDRVKSMDDLN-VRDEVRDYLT 56

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + + I   E+  ++ + DGT K+LL+     +     IETV +  K   ++CV++QVGC+
Sbjct: 57  EKYVISTQELFVKQEAGDGTVKFLLK-----LHDGHYIETVLMRHKYGRSVCVTTQVGCN 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +G  K  R+LTA E++ Q++  +  L       D EG      G ++S+IV+M
Sbjct: 112 IGCSFCASGLLKKTRDLTAGEVVEQIMTVQHFL-------DEEGE-----GDRVSHIVVM 159

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           G+GEP  NFDN+   L +  D  GL+ + R+I +STSG    I +  + ++ + LA+SLH
Sbjct: 160 GIGEPFDNFDNLVDFLLVVKDERGLAIAPRKINVSTSGLADKIYKFADLDLRINLALSLH 219

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++LR  ++ INR +PL+ L+ + R+Y   +N +RITFEY++L  +ND P  A  L  
Sbjct: 220 APNDELRTRIMKINRAFPLDKLMPSIRYYVEKTN-KRITFEYILLSKVNDLPEHAEELAD 278

Query: 305 ILKGIPAK--INLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +++ I  K  +NLIP+NP     +Y  S  +DI+ F + +K+ G ++ +R   G DI AA
Sbjct: 279 LIEDIKDKSYVNLIPYNPVNEHIQYERSTPEDIMAFYDILKKRGVNTGVRLEHGTDIDAA 338

Query: 362 CGQLKS 367
           CGQL+S
Sbjct: 339 CGQLRS 344


>gi|168484426|ref|ZP_02709378.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042321|gb|EDT50367.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC1873-00]
 gi|332077182|gb|EGI87644.1| radical SAM superfamily protein [Streptococcus pneumoniae GA17545]
 gi|332203922|gb|EGJ17989.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47368]
          Length = 361

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 209/368 (56%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    +    E            ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAERGQDE------------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N R +TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RGVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 TELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|229495911|ref|ZP_04389637.1| radical SAM enzyme, Cfr family [Porphyromonas endodontalis ATCC
           35406]
 gi|229317224|gb|EEN83131.1| radical SAM enzyme, Cfr family [Porphyromonas endodontalis ATCC
           35406]
          Length = 339

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/361 (37%), Positives = 196/361 (54%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+GM+ EEL    L IG+P+   R    Q+  WIY + +  F  M++IS   R LL + 
Sbjct: 3   TLLGMLPEELTGLALSIGMPKFAGR----QLADWIYNKRVTSFDEMTNISLRHRALLQEK 58

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            +I     V    S DGTRK+L       +G G   +E+V+IPE  R TLCVSSQ+GC +
Sbjct: 59  ATIGRKAPVARADSKDGTRKFLF-----AVGDGAQYVESVFIPEGDRATLCVSSQIGCKM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q    NLT+ EI+ Q+L                   IP    K++NIV MG
Sbjct: 114 DCLFCMTGKQGFKGNLTSAEIVNQIL------------------SIPD-SDKLTNIVYMG 154

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N + V KS++  +   GL+ S +RITLS+ G  P +++  E+    LAISLH  
Sbjct: 155 MGEPLDNVEAVLKSIACFTHPSGLAMSPKRITLSSIGLEPGLSKFLEQCSCHLAISLHNA 214

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
             + R  ++PI R  P+E  I+  + Y   S  RR+TFEY++  G+ND    A  L++++
Sbjct: 215 LPEERLSMMPIERAMPIEKTIETLKRY-NFSGQRRLTFEYIVFGGLNDDIAHAKALLRLI 273

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +   INLI ++  P      S ++ +  F++ +  +G  + IR  RG DI AACG L 
Sbjct: 274 RPLECHINLIRYHRIPNVALPSSQEERMQRFADYLNGAGVPTTIRASRGEDIAAACGMLS 333

Query: 367 S 367
           +
Sbjct: 334 A 334


>gi|332521669|ref|ZP_08398122.1| radical SAM enzyme, Cfr family [Lacinutrix algicola 5H-3-7-4]
 gi|332042758|gb|EGI78958.1| radical SAM enzyme, Cfr family [Lacinutrix algicola 5H-3-7-4]
          Length = 346

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 204/366 (55%), Gaps = 24/366 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK+ +  + +E+L E  +K G        R +Q+++W++ +G   F+ M++IS+E R +L
Sbjct: 4   KKKDIRALSKEQLREFFVKEG----DKAFRGNQVYEWLWGKGAHTFEDMTNISKETRQML 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F I +  +   + S DGT K  ++     I     +E+V IP ++R T CVSSQVGC
Sbjct: 60  QDNFVINHISVDTMQRSSDGTVKNAVKLHDGLI-----VESVLIPTETRTTACVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C FC T   K +RNL  +EI  QV+             D E  +     R +SNIV 
Sbjct: 115 SLDCKFCATSRLKRMRNLNPDEIYDQVVAI-----------DKESKLY--FNRPLSNIVF 161

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N++NV K++   +   GL  S +RI +STSG    I ++ ++ +   LA+SL
Sbjct: 162 MGMGEPLMNYNNVIKAIDKITSPEGLGMSPKRIVVSTSGVPKMIKKMADDAVKFNLAVSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  +++R  ++P N+ +PL  L +A  ++   +  R+IT+EYV+  GIND   D   L+
Sbjct: 222 HSAIDEVRTEIMPFNKTFPLNDLKEALEYWYEKTQ-RKITYEYVVWDGINDRREDINALV 280

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K  K +P KIN+I +NP    ++  +  K I  + + ++ +     +R  RG DI AACG
Sbjct: 281 KFCKYVPCKINIIEYNPIDDGQFQQASSKAIDNYIQALESNNIVVNVRRSRGKDIDAACG 340

Query: 364 QLKSLS 369
           QL + S
Sbjct: 341 QLANKS 346


>gi|170288910|ref|YP_001739148.1| radical SAM protein [Thermotoga sp. RQ2]
 gi|205829920|sp|B1LAW7|RLMN_THESQ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|170176413|gb|ACB09465.1| radical SAM enzyme, Cfr family [Thermotoga sp. RQ2]
          Length = 343

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 135/363 (37%), Positives = 206/363 (56%), Gaps = 32/363 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+ +  EEL   +  +G+     R R  QI  W++ + + +F  M+++S++ R LL +
Sbjct: 2   KNLLDLSYEELVAEVTSLGLE----RYRADQILDWVFNKKVNNFDEMTNLSKQHRALLKE 57

Query: 67  HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           HFSI + +++D+K+S  DGT K+L        G  +E   ++ P+  R T C+S+QVGC 
Sbjct: 58  HFSIPFLKLLDKKVSRIDGTTKFLWELED---GNTIESVMLFHPD--RITACISTQVGCP 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG    VRNLT  EI+ Q+L            E  E        +KI N+V M
Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQIL----------SMEREE-------KKKIGNVVYM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N++N  KS+ I +     +   RRIT+ST G    I ++ EE + V LA+SLH
Sbjct: 156 GMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N  R+ LVP+N+KY +E +++A + Y       R+T EYV+++GIND   DA  L +
Sbjct: 216 APTNFKRDQLVPLNKKYSIEEILNAVKIYQR-KTGNRVTIEYVLIRGINDEISDAKKLAE 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKD-IVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ILK +   +NLIP N  P  E L    ++ ++ F   +  +G  + IR  +G DI AACG
Sbjct: 275 ILKNMKIFVNLIPVN--PTAEDLKKPSRERLLAFKRILLENGIEAEIRREKGSDIEAACG 332

Query: 364 QLK 366
           QL+
Sbjct: 333 QLR 335


>gi|303239357|ref|ZP_07325885.1| radical SAM enzyme, Cfr family [Acetivibrio cellulolyticus CD2]
 gi|302593143|gb|EFL62863.1| radical SAM enzyme, Cfr family [Acetivibrio cellulolyticus CD2]
          Length = 347

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 208/363 (57%), Gaps = 30/363 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+ +  EELE   L++G      + R  Q+++W+  +G++D   M+++S+++R  L 
Sbjct: 4   KVDLLNLTIEELENFFLEMG----QQKFRAKQVFQWVN-KGVKDIDEMTNLSKDIRESLR 58

Query: 66  QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
               I   E+V++ +S  DGT K+L +     I G + +E+V +  +   ++C+SSQVGC
Sbjct: 59  ASAYINKLEVVEKFVSKIDGTTKYLFKL----IDGNI-VESVLMKYEHGFSVCISSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +     +RNLT+ E+L QVL  ++                   G ++ N+V+
Sbjct: 114 KMGCKFCASTGVGFLRNLTSAEMLDQVLTIQN-----------------DAGSRVGNVVV 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+ K + + +   G++   R I +ST G VP I ++ +E + + L+ISL
Sbjct: 157 MGIGEPFDNYDNLVKFIRLINHKDGMNLGARHIAVSTCGLVPEILKLSKENLPITLSISL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++ R  ++P+N++Y ++ LI+AC+ Y   + +RRITFEY ++ G+ND    A  L 
Sbjct: 217 HATNDEAREKIMPVNKRYSIDKLIEACKIYTE-TTSRRITFEYALIDGVNDLIEYAQQLS 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N      +  S ++ I  F E +++ G  + +R   G DI AACG
Sbjct: 276 NLLKGMLCHVNLIPVNSVTNTGFKKSSKERIYKFKEVLEKRGIETTVRRELGADIDAACG 335

Query: 364 QLK 366
           QL+
Sbjct: 336 QLR 338


>gi|281426132|ref|ZP_06257045.1| radical SAM enzyme, Cfr family [Prevotella oris F0302]
 gi|281399708|gb|EFB30539.1| radical SAM enzyme, Cfr family [Prevotella oris F0302]
          Length = 348

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 30/374 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L+GM   EL+EA  ++G+P         QI KW+Y   ++    M++IS+  R  L 
Sbjct: 5   KKALLGMTLNELKEACKQLGMPA----FTGGQIAKWLYTHHVKHIDEMTNISKTNRAKLE 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + ++I   E ++ + S DGT K+L  FP     G   +ETVYIPE  R TLCVS QVGC 
Sbjct: 61  EAYTIGCAEALEAQHSKDGTIKYL--FPT--ASGKF-VETVYIPENDRATLCVSCQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LT  +IL Q+                    +P V  K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLTTCDILNQIY------------------SLPEVD-KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DN+ ++  I +   G ++S +RIT+S+ G    + R  EE    +AISLH+
Sbjct: 157 GQGEPMDNLDNILRTTEILTADYGWAWSPKRITVSSVGVKNKLKRFIEESDCHVAISLHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              + R  L+P  +   +  +++  R+Y   S+ RR++FEY++  G+NDS   A  L+++
Sbjct: 217 PIAEQRAELMPAQKGMSIAEIVELLRNYD-FSHQRRLSFEYIVFGGVNDSMTHARELVRL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+  +INLI F+  P      +D+K +    + +   G  + IR  RG DI AACG L
Sbjct: 276 LKGLDCRINLIRFHQIPDVPLHGADEKRMEELRDYLTSHGIFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSKRIPKVPRQE 379
            S SK+I ++  ++
Sbjct: 336 -STSKKIGEIRHEQ 348


>gi|282876907|ref|ZP_06285759.1| radical SAM enzyme, Cfr family [Prevotella buccalis ATCC 35310]
 gi|281300950|gb|EFA93267.1| radical SAM enzyme, Cfr family [Prevotella buccalis ATCC 35310]
          Length = 343

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 192/365 (52%), Gaps = 29/365 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+GM   EL+E    +G+P         Q+ KW+Y R +     M+DIS+  R  L 
Sbjct: 5   KKKLLGMTLSELKEVAQALGMPS----FAGGQMAKWLYQRQVTSIGEMTDISKSNRERLA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + + I     +D + S DGT K+L  FP         +ETV+IP+  R TLCVS QVGC 
Sbjct: 61  EEYEIGCMAHIDAQYSKDGTIKYL--FPT---ASGKFVETVFIPDDDRATLCVSCQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLT  +IL QV                    +P   R ++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGNLTYADILNQVY------------------SLPERDR-LTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DNV +   + +   G ++S +RIT+S+ G    + R  +E    +AISLH+
Sbjct: 157 GQGEPMDNLDNVLRVTQVMTADYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAISLHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              + R++L+P  +  P+E ++D  R Y   ++ RR++FEY++  G+ND+P  A  +I +
Sbjct: 217 ALPEQRSMLMPAEKGMPIEQIVDLLRGYD-FAHQRRLSFEYIVFGGLNDTPMHARRIIDL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L G+  ++NLI F+  P      +D++ +  F   +   G  + IR  RG DI AACG L
Sbjct: 276 LHGLDCRVNLIRFHQIPNVPLKGADEQKMENFRNYLTSHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSK 370
            +  K
Sbjct: 336 STAKK 340


>gi|291297322|ref|YP_003508720.1| radical SAM enzyme, Cfr family [Meiothermus ruber DSM 1279]
 gi|290472281|gb|ADD29700.1| radical SAM enzyme, Cfr family [Meiothermus ruber DSM 1279]
          Length = 342

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 124/333 (37%), Positives = 182/333 (54%), Gaps = 21/333 (6%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+  W+Y +G R +  M+D+ + +R    + + I     V    S DG+ K+L    
Sbjct: 24  RRGQLAAWLYAKGARQWDEMTDLPKALRAEWAEQYRISEFTEVAPFPSQDGSVKYLFTL- 82

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              + G  + E VY+P  +R T+C+SS VGC   C+FC TG     RNLTA E+L QVL 
Sbjct: 83  ---LDG-QKTEAVYMPYLNRKTICISSMVGCPAGCTFCATGRMGFGRNLTAAEMLDQVLF 138

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
           A       P              R+I N+V+MGMGEPL N +NV K+L       GL+ S
Sbjct: 139 AAYHQQHAP--------------REIRNVVLMGMGEPLLNLENVFKALERMLHPEGLAMS 184

Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            RRITLST G    I ++ E  + V LA+SLHA  ++ R  ++P   +Y +  +++A RH
Sbjct: 185 PRRITLSTVGIPRGIYKMAEWGLEVRLALSLHAPDDETRQRIIPTAHRYSIAEIMEAVRH 244

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +  RRIT EY +LKG+ND    A  L +  +G+   +NLIP+NPW G  +  + + 
Sbjct: 245 YYAKTK-RRITLEYTLLKGVNDHDWQARALAQHFRGLSVHMNLIPWNPWEGAPHQGTPRA 303

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I+ F+  +++ G  + +R  RG D+ AACGQL
Sbjct: 304 QILKFAAILEQQGIPTSVRWSRGRDVGAACGQL 336


>gi|327398526|ref|YP_004339395.1| Ribosomal RNA large subunit methyltransferase N [Hippea maritima
           DSM 10411]
 gi|327181155|gb|AEA33336.1| Ribosomal RNA large subunit methyltransferase N [Hippea maritima
           DSM 10411]
          Length = 342

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 205/364 (56%), Gaps = 31/364 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            ++ +  +EL+  L+ +G    + + R  QI+ ++Y + I  F  ++ + +EVR  L + 
Sbjct: 3   DIMSLEYDELKSILIGLG----YEKYRAEQIFSFLYKQRIEGFDDITVLKKEVRRQLKEQ 58

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSL 126
           F I   E      + DGT+K+L +     +   + IE+V IP E +R T+CVS+Q GC +
Sbjct: 59  FFIYKIEEKTSYAADDGTKKYLFK-----LNDGMLIESVLIPMEANRFTICVSTQAGCRM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG     RNL+  EI+ QV+                  ++     K +N+V MG
Sbjct: 114 GCKFCATGRMGFKRNLSTSEIVSQVVY-----------------ILKVNNLKTANVVYMG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
           MGEPL N++N  KS+ I SD  GLS SKRRITLST+G  P + ++ +++  + +A+SLH+
Sbjct: 157 MGEPLDNYENTVKSIKILSDDRGLSISKRRITLSTAGITPGVNKLKKDLPNINMALSLHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           + +  R++++PIN  YP++ +++  + +P +   +RITFEYVM+KGIND+  D   L+K+
Sbjct: 217 IISKKRSMIMPINDTYPIDEVLNELKDFP-MPRRKRITFEYVMIKGINDTKDDLKALLKV 275

Query: 306 LKGIPAKINLIPFNPWP--GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +     K+N+IP N     G ++  +    I  F++ ++  G    IR  +G  I AACG
Sbjct: 276 MSNFKCKLNIIPLNKHDLLGTKFEPTPMDRIEEFADYLRNKGMFVTIRKSKGSSINAACG 335

Query: 364 QLKS 367
            L +
Sbjct: 336 MLAT 339


>gi|189467727|ref|ZP_03016512.1| hypothetical protein BACINT_04119 [Bacteroides intestinalis DSM
           17393]
 gi|189435991|gb|EDV04976.1| hypothetical protein BACINT_04119 [Bacteroides intestinalis DSM
           17393]
          Length = 346

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/350 (36%), Positives = 186/350 (53%), Gaps = 29/350 (8%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
           +EA+ ++G+P         QI  W+Y + +     M+++S + R LL   + +     V+
Sbjct: 15  QEAVKRLGMPG----FAAKQIASWLYDKKVNSIDDMTNLSLKHRDLLKDVYEVGADAPVE 70

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
              S DGT K+L R      G    +E VYIP++ R TLCVSSQVGC + C FC TG Q 
Sbjct: 71  AMRSVDGTVKYLYR-----AGDKHFVEAVYIPDEDRATLCVSSQVGCKMNCKFCMTGKQG 125

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
              NLTA +I+ Q+          P  +            K++N+VMMGMGEPL N D V
Sbjct: 126 FTANLTANQIINQI-------NSLPERD------------KLTNVVMMGMGEPLDNLDEV 166

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257
            K+L I + S G  +S +RITLST G      R  E     LA+SLH+     R  L+P 
Sbjct: 167 LKALEIMTASYGYGWSPKRITLSTVGLRKGFQRFIEGSECHLAVSLHSPVALQRRELMPA 226

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
            + + +  ++D  ++Y   S  RR++FEY++ KG+NDS   A  L+K+L+G+  +INLI 
Sbjct: 227 EKAFSITEMVDLLKNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELLKLLRGLDCRINLIR 285

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F+  PG +   +D + +    + +   G  + IR  RG DI AACG L +
Sbjct: 286 FHAIPGVDLEGADMETMTKLRDYLTSHGLFTTIRASRGEDIFAACGMLST 335


>gi|149021632|ref|ZP_01835663.1| hypothetical protein CGSSp23BS72_07840 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930093|gb|EDK81079.1| hypothetical protein CGSSp23BS72_07840 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 361

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 212/367 (57%), Gaps = 30/367 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++++IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVNHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV       +D  G++   R IT+STSG    I    +E + + LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQINLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA++N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHALNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDID 337

Query: 360 AACGQLK 366
           AACGQL+
Sbjct: 338 AACGQLR 344


>gi|220928956|ref|YP_002505865.1| ribosomal RNA large subunit methyltransferase N [Clostridium
           cellulolyticum H10]
 gi|254807165|sp|B8I259|RLMN_CLOCE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|219999284|gb|ACL75885.1| radical SAM enzyme, Cfr family [Clostridium cellulolyticum H10]
          Length = 349

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 199/361 (55%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+ M  EELE+ L ++G      + R  QI+KWI   GIR F  M++IS+++R  L + 
Sbjct: 3   NLMNMTLEELEQMLSEMG----QQKFRAKQIFKWIN-SGIRSFSDMTNISKQLRDELEKV 57

Query: 68  FSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   +IVD  +   D T K+L       I     IE+V +  K   T C+SSQ GC +
Sbjct: 58  SKISRLKIVDRLQSKIDSTVKYLFELEDGNI-----IESVLMEYKHGFTACISSQAGCRM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +      RNLT  E+L QV+  +         ED         G +I +IV+MG
Sbjct: 113 GCKFCASTGAGFSRNLTPGEMLDQVMTMQ---------ED--------SGNRIGHIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEPL N++NV K L I +   GL    R I+LST G VP I ++ +E I + L++SLH+
Sbjct: 156 IGEPLDNYENVIKFLKIVNHPDGLMIGMRNISLSTCGVVPRILQLAKENIPITLSVSLHS 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             +D R+ ++P+N+ Y ++ LI AC+ Y  +S  RRITFEY M+ G NDS +DA  L  +
Sbjct: 216 ARDDKRSAMMPVNKTYCIDKLISACKIYT-VSTKRRITFEYAMILGENDSEQDARELAGL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N   G  Y  S +  I  F   ++  G  + +R   G DI AACGQL
Sbjct: 275 LKGMLCHVNLIPVNTVTGNGYKKSSRIHIDKFKNILESKGIETTVRRELGSDINAACGQL 334

Query: 366 K 366
           +
Sbjct: 335 R 335


>gi|170077338|ref|YP_001733976.1| radical SAM protein [Synechococcus sp. PCC 7002]
 gi|205829912|sp|B1XQH8|RLMN_SYNP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|169885007|gb|ACA98720.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7002]
          Length = 346

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 202/369 (54%), Gaps = 31/369 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + ++ L+G    EL + +   G P      R  Q++ W+Y +GI D   ++   +  R  
Sbjct: 1   MPQDVLLGKSLPELTDWIETTGQPA----YRGKQLYNWLYQKGIHDLSEITVFPKAWREQ 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           +   + +   +I  ++ + DGTRK+LL+     I     IETV IP + R T+CVSSQVG
Sbjct: 57  MGT-YPVGRSQIHHQRTAPDGTRKYLLQLHDGLI-----IETVGIPTEKRLTVCVSSQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TG     R+L A EI+ QVL  ++   DF               +++S++V
Sbjct: 111 CAMACDFCATGKSGFTRHLQAHEIIDQVLTVQT---DFQ--------------QRVSHVV 153

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
            MGMGEPL N + V KS+   +  +G+   +R +T+ST G    I  + ++ + + LA+S
Sbjct: 154 FMGMGEPLANLEQVLKSIQSLNQDIGIG--QRSLTVSTVGVPDQIRALAQQNLQITLAVS 211

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +  LR  ++P    YP+E L+D CR Y  ++  RR++FEY++L G+ND P  A  L
Sbjct: 212 LHAPNQALRESIIPTAVHYPIEALLDECREYVAITR-RRLSFEYILLAGVNDLPDHAAEL 270

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K LKG  + +NLIP+NP     +    +K I  F + ++    +  +R  +GL+  AAC
Sbjct: 271 AKKLKGFQSHVNLIPYNPITEVPFQRPGKKRINVFKQILQDHKIAVSVRYSKGLEADAAC 330

Query: 363 GQLKSLSKR 371
           GQL+S  +R
Sbjct: 331 GQLRSNLRR 339


>gi|331004330|ref|ZP_08327805.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330411396|gb|EGG90811.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 346

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 33/356 (9%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII--- 71
           EEL+  + ++G        R  Q+++W++   I  F   S++S+  R  L +  S+    
Sbjct: 10  EELKTFVKELG----EAEFRAKQLFEWLHKSLIDSFDECSNLSKAFREKLKEVASLTGME 65

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
             E+ + KI  D T+K+L       I     IE+V +  +   ++C+SSQVGC + C FC
Sbjct: 66  AIEVFESKI--DDTKKYLFALEDGNI-----IESVRMKYEHGNSVCISSQVGCRMGCKFC 118

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            +    LVRNL+  E+L QV   + LLG+                 ++SNIV+MG GEP+
Sbjct: 119 ASTLDGLVRNLSVSEMLDQVYKIQKLLGE-----------------RVSNIVVMGSGEPM 161

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDL 250
            N+DN+ K + I S  MGL+ S+R IT+ST G VP I  + +E + + LA+SLHA ++++
Sbjct: 162 DNYDNIVKFVKIISSDMGLNISQRNITVSTCGIVPKIRELADEGLSITLALSLHAPNDEI 221

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R  ++P+  KY L+ +I AC +Y      RR+++EY ++ GIND+ ++A+NL+K++ G  
Sbjct: 222 RKTIMPVANKYALKDVISACDYYFK-KTGRRVSYEYSLVAGINDNIKEAMNLVKLVNGRN 280

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             INLIP NP    ++  SD+  I  F + +++ G ++ +R   G DI  ACGQL+
Sbjct: 281 IHINLIPVNPIKERDFKQSDKLKIKEFKDFLEKKGVNATVRREMGRDIDGACGQLR 336


>gi|149007648|ref|ZP_01831265.1| hypothetical protein CGSSp18BS74_04131 [Streptococcus pneumoniae
           SP18-BS74]
 gi|147760803|gb|EDK67774.1| hypothetical protein CGSSp18BS74_04131 [Streptococcus pneumoniae
           SP18-BS74]
          Length = 361

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 209/368 (56%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQGIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    +    E            ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAERGQDE------------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N R +TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RGVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 TELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|166032715|ref|ZP_02235544.1| hypothetical protein DORFOR_02430 [Dorea formicigenerans ATCC
           27755]
 gi|166027072|gb|EDR45829.1| hypothetical protein DORFOR_02430 [Dorea formicigenerans ATCC
           27755]
          Length = 356

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 196/365 (53%), Gaps = 29/365 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+ ++    +EL++ +  IG        R  QI+ W++ +   +F  M+++S+ +R  
Sbjct: 1   MEKKDIVSYNYDELQDEIKSIG----EKPFRAKQIYAWLHEKLAEEFDEMTNLSKALREK 56

Query: 64  LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L+Q + I   ++V  +IS  D T K+L             IE+V +      ++C+SSQV
Sbjct: 57  LDQAYEIRKVKVVAHQISKVDPTEKFLFELE-----DGNRIESVLMKYNYGNSVCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L RNLT  E+L Q+   + + G+                 ++SN+
Sbjct: 112 GCRMGCRFCASTLDGLERNLTTSEMLRQIYQIQKMTGE-----------------RVSNV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241
           V+MG GEPL N+DN  K + + SD  GL+ S+R IT ST G VPNI R+ GE + + LA+
Sbjct: 155 VVMGTGEPLDNYDNFVKFIHMLSDEHGLNISQRSITASTCGIVPNIHRLAGEGLQITLAL 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH  S + R  L+PI  KY L  +++AC  Y   +  RR+TFEY ++  +ND P D   
Sbjct: 215 SLHGSSQEKRKKLMPIANKYELSEVLEACDDYYKQT-GRRVTFEYSLVADVNDGPDDVKE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  ILK     +NLIP NP     +   D K  + F   ++++G +  IR  RG DI  A
Sbjct: 274 LTGILKHRNCHLNLIPVNPIKERNFKKPDSKKAMEFQNKLEKNGINVTIRRERGSDIDGA 333

Query: 362 CGQLK 366
           CGQL+
Sbjct: 334 CGQLR 338


>gi|157692255|ref|YP_001486717.1| Fe-S-cluster redox protein [Bacillus pumilus SAFR-032]
 gi|205829664|sp|A8FD40|RLMN_BACP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157681013|gb|ABV62157.1| possible Fe-S-cluster redox protein [Bacillus pumilus SAFR-032]
          Length = 360

 Score =  216 bits (549), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 192/340 (56%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y + +  F  MS++S+E+R  L   F+I   + V ++ S DGT K+L   
Sbjct: 37  FRAAQIFEWLYEKRVTSFDAMSNLSKELREKLKAQFAITTLKTVIKQTSQDGTIKFLFE- 95

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +  +   ++CV++QVGC + C+FC +    L RNL A EI+ QVL
Sbjct: 96  ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVL 151

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S++V+MG+GEP  NF+ +   L I +   GL+ 
Sbjct: 152 KVQQALDE--------------TDERVSSVVIMGIGEPFDNFEEMLAFLKIINHDNGLNI 197

Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I +   E++ +  A+SLHA + ++R+ L+PIN+ Y L  L++A  
Sbjct: 198 GARHITVSTSGIIPKIYQFADEQMQINFAVSLHAPNTEIRSRLMPINKAYKLPKLMEAIE 257

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RR++FEY +  G+ND    A  L  +LKGI   +NLIP N  P  +Y+ + +
Sbjct: 258 YYIQ-KTGRRVSFEYGLFGGVNDQVHHAEELADLLKGIKCHVNLIPVNYVPERDYVRTPR 316

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           + I  F + +K  G +  IR  +G DI AACGQL++  ++
Sbjct: 317 EQIFLFEKTLKERGVNVTIRREQGHDIDAACGQLRAKERQ 356


>gi|218261353|ref|ZP_03476207.1| hypothetical protein PRABACTJOHN_01873 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224074|gb|EEC96724.1| hypothetical protein PRABACTJOHN_01873 [Parabacteroides johnsonii
           DSM 18315]
          Length = 343

 Score =  216 bits (549), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 193/368 (52%), Gaps = 31/368 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  L+GM  EEL+    + G+P    +    QI  W+Y + +     M++I+   R LL
Sbjct: 3   EKRRLLGMTLEELKGVASEAGLPGYAAK----QIADWLYKKKVTSIAAMTNIAAAKRTLL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQVG 123
            + F +      D   S DGT K+L  +PA    GP   +E+VYIP + R TLCVSSQVG
Sbjct: 59  EESFEVGAVPPSDLMKSVDGTIKYL--YPA----GPGNFVESVYIPTEDRATLCVSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q   +NL+A EIL Q+          P  E++            +NIV
Sbjct: 113 CKMNCLFCMTGKQGFTKNLSANEILNQI-------QSLPETEEL------------TNIV 153

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N D + K L I +   G ++S +RIT+ST G    + R  EE    LA+SL
Sbjct: 154 FMGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVAKGLKRFLEESECHLAVSL 213

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R  L+P+ + +P   +I+  + Y   ++ RRI+FEY++ K +ND  + A  L+
Sbjct: 214 HSPYPGERLSLMPVEKAFPARDIIETIKQY-DFTHQRRISFEYIVFKNLNDDLQHAKALV 272

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L  +P ++NLI F+  P      SD   +  F + +  +G    IR  RG DI AACG
Sbjct: 273 CLLDKVPCRVNLIRFHAIPNVSLESSDLARMEAFRDTLNAAGIVCTIRASRGEDIFAACG 332

Query: 364 QLKSLSKR 371
            L +  K+
Sbjct: 333 MLSTAKKQ 340


>gi|327313758|ref|YP_004329195.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola F0289]
 gi|326945675|gb|AEA21560.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola F0289]
          Length = 357

 Score =  216 bits (549), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 196/366 (53%), Gaps = 29/366 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+GM   EL+E    +G+P         Q+ KW+Y + ++    M++IS+  R  L 
Sbjct: 9   KKYLLGMTLGELKEVAKSLGMPA----FTGGQMAKWLYTQQVKSIDEMTNISKANREKLA 64

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             ++I   E  D + S DGT K+L  FP     G   +ETVYIPE  R TLCVSSQVGC 
Sbjct: 65  AAYAIGCKEPTDVQYSKDGTVKYL--FPTDS--GKF-VETVYIPEDGRATLCVSSQVGCK 119

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +L+A +IL QV                    +P    K++NIV M
Sbjct: 120 MNCLFCQTGKQGFEGSLSATDILNQVY------------------SLPERD-KLTNIVFM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DNV +   I +   G  +S +RIT+S+ G    + R  EE    +AIS+H+
Sbjct: 161 GQGEPMDNLDNVLRVTEILTAGFGYGWSPKRITVSSVGIKGKLKRFLEESDCHVAISMHS 220

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R+ L+P  R   +E ++D   +Y   S+ RR++FEY++ K +NDS   A  ++++
Sbjct: 221 PLHEQRSELMPAERGMSIESIVDLLGNYD-FSHQRRLSFEYIVFKDVNDSEAHAKAIVRL 279

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+  +INLI F+P P       D + +  F   + + G  + IR  RG DI AACG L
Sbjct: 280 LKGLDCRINLIRFHPIPNTPLQGVDDRKMEEFRNYLTQHGVFTTIRASRGQDIFAACGLL 339

Query: 366 KSLSKR 371
            +  ++
Sbjct: 340 STAKEK 345


>gi|119488056|ref|ZP_01621500.1| hypothetical protein L8106_11682 [Lyngbya sp. PCC 8106]
 gi|119455345|gb|EAW36484.1| hypothetical protein L8106_11682 [Lyngbya sp. PCC 8106]
          Length = 348

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 193/361 (53%), Gaps = 33/361 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G+  EEL   + + G P      R  Q+++WIY +G +    ++   ++ R  +  +F
Sbjct: 11  LLGLSLEELTNWVQEQGQPA----YRGKQLYQWIYQKGSKSLSEITVFPKQWRETV-ANF 65

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           SI    I    ++ D T K+LL+     I     IETV IP + R T+CVSSQVGC + C
Sbjct: 66  SIGRSTIHYRSVAPDQTVKYLLKLADNNI-----IETVGIPTEKRLTVCVSSQVGCPMAC 120

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG    VRNL   EI+ QVL  +    DF              GR++S+IV MGMG
Sbjct: 121 DFCATGKGGFVRNLETHEIIDQVLTVQE---DF--------------GRRVSHIVFMGMG 163

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHAV 246
           EPL N  NV  ++   +  +G+   +R IT+ST G +P   R   G ++ V LA+SLHA 
Sbjct: 164 EPLLNTKNVVAAIKSLNQDVGIG--QRMITVSTVG-IPQQIRDFAGYQLQVTLAVSLHAS 220

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +  LR  L+P    YPLE LI  CR Y   +  RR++FEY++L   ND P  A+ L   L
Sbjct: 221 NQKLREKLIPSADHYPLEKLIADCREYVN-TTGRRVSFEYILLANFNDKPEHAIELATHL 279

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +G  + +NLIP+NP    +Y       I TF + +K    +  +R  RGL+  AACGQL+
Sbjct: 280 RGFQSHVNLIPYNPISEVDYQRPTSPQINTFMKALKERHIAVSVRYSRGLEADAACGQLR 339

Query: 367 S 367
           +
Sbjct: 340 A 340


>gi|255656559|ref|ZP_05401968.1| radical SAM protein [Clostridium difficile QCD-23m63]
 gi|296449989|ref|ZP_06891753.1| cfr family radical SAM enzyme [Clostridium difficile NAP08]
 gi|296878370|ref|ZP_06902378.1| cfr family radical SAM enzyme [Clostridium difficile NAP07]
 gi|296261259|gb|EFH08090.1| cfr family radical SAM enzyme [Clostridium difficile NAP08]
 gi|296430668|gb|EFH16507.1| cfr family radical SAM enzyme [Clostridium difficile NAP07]
          Length = 343

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 126/338 (37%), Positives = 197/338 (58%), Gaps = 30/338 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI---VDEKISCDGTRKWL 89
            R SQI+ WIY +G + F+ M++I + +R+ L +   I + +I   ++ K+  D T+K+L
Sbjct: 28  FRGSQIFSWIY-KGAKTFEDMNNIPKSLRNKLEEISCIGHIDIELKLESKV--DNTKKYL 84

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
                  I     IETV +   SR T+CVS+QVGC + C+FC +    L+RNL   EIL 
Sbjct: 85  FLLDDGNI-----IETVMMDYDSRVTVCVSNQVGCRMGCNFCASTMDGLIRNLEPWEILD 139

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           QV+                  +    G+++SN+V+MG GEPL NF+N K+ L I ++  G
Sbjct: 140 QVI-----------------KIQEDTGKRVSNLVLMGSGEPLDNFENTKQFLKIINEKNG 182

Query: 210 LSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           L+   R ITLST G VP +  + + EI + LA+SLH+  ++ R  ++P+   Y ++ ++D
Sbjct: 183 LNIGYRHITLSTCGIVPKMYELADLEIAINLALSLHSPYDEERRKIMPVANAYSIKEILD 242

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           ACR+Y   +N RR+TFEY ++KG+NDS ++A  L K+LKG+   +NLIP N     EY  
Sbjct: 243 ACRYYIKKTN-RRVTFEYSLIKGVNDSEKEAKALAKLLKGMLCHVNLIPINKVEEREYEK 301

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            D+  I  F + ++++   + +R   G DI  ACGQL+
Sbjct: 302 PDKAFIYKFRDSLEKNNIPATVRMSMGSDISGACGQLR 339


>gi|225858576|ref|YP_002740086.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pneumoniae 70585]
 gi|254807216|sp|C1C6B0|RLMN_STRP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|225721405|gb|ACO17259.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae 70585]
          Length = 361

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 211/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N R +TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RGVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 TELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|256420250|ref|YP_003120903.1| radical SAM enzyme, Cfr family [Chitinophaga pinensis DSM 2588]
 gi|256035158|gb|ACU58702.1| radical SAM enzyme, Cfr family [Chitinophaga pinensis DSM 2588]
          Length = 347

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 194/337 (57%), Gaps = 25/337 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE--KISCDGTRKWLL 90
            R  Q+++W++++    F  M++IS+++R  L +HF++  P I  +  + S DGT K   
Sbjct: 28  FRAKQVYEWLWLKHATSFDAMTNISKDLRSKLEEHFTL--PAITTDTTQHSDDGTIKSRF 85

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
           R     +     +E V IP  +R T CVSSQVGCSL+C FC TG     RNL  +EI  +
Sbjct: 86  RLHDGHM-----VEGVLIPTDTRQTACVSSQVGCSLSCKFCATGYMDRKRNLDFDEIYDE 140

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           V L             +    + + G+K+SNIV MGMGEPL N+ NV +S+   +   GL
Sbjct: 141 VAL-------------LNQQAMEAYGKKLSNIVYMGMGEPLLNYKNVLQSIERITSPDGL 187

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S RRIT+ST+G    I ++G++ +   LA+SLHA +++ R+ ++PIN    L++LI+A
Sbjct: 188 GMSPRRITVSTAGVAKMIRQLGDDKVKFNLALSLHAANDEKRSQIMPINDTNNLKVLIEA 247

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYLC 328
             ++       +I+FEY++ K  NDS +DA  LI+I + +PA  +N+I +NP     ++ 
Sbjct: 248 LNYFYK-ETQNQISFEYILFKDFNDSFKDAEELIRIYRQVPADLVNIIEYNPISNARFMK 306

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            D+     F E + ++  ++ +R  RG DI AACGQL
Sbjct: 307 PDEDVAEAFMEYLSKNRVNARLRRSRGKDIDAACGQL 343


>gi|295091952|emb|CBK78059.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium cf.
           saccharolyticum K10]
          Length = 376

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 127/355 (35%), Positives = 200/355 (56%), Gaps = 33/355 (9%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH--FSIIYP 73
           ELE  L ++G        R  Q+++W++V+    F  M+++S+ +R  L +   ++ + P
Sbjct: 42  ELEAYLKEMGEKP----FRAKQLYQWMHVKLAASFDEMTNLSKGLRETLGRQCFYASLTP 97

Query: 74  EIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
             VD +IS  DGTRK+L         G V IE+V +  K   ++C+SSQVGC + C FC 
Sbjct: 98  --VDVRISAVDGTRKYLFELS----DGNV-IESVLMRYKHGNSVCISSQVGCRMGCRFCA 150

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           +    L RNL   E+L Q+                   +    G ++SN+V+MG GEP+ 
Sbjct: 151 STLDGLERNLKPSEMLEQIY-----------------RIQRDTGERVSNVVVMGSGEPMD 193

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLR 251
           N+DN+ + + + +D  GL+ S+R +T+ST G VP I +  EE + V LA+SLHA ++++R
Sbjct: 194 NYDNLIRFIHLLTDENGLNISQRNVTVSTCGIVPRIRQFAEEGLQVTLALSLHAPNDEVR 253

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             L+P+ + Y L  ++DAC HY      RR+TFEY ++KG+ND+  +A  L +++K    
Sbjct: 254 KTLMPVAKSYALRDVLDAC-HYYFEKTGRRLTFEYSLVKGVNDNLEEARALAELIKDQHG 312

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            +NLIP NP    +Y  SD+K I  F   ++R G +  +R   G DI  ACGQL+
Sbjct: 313 HVNLIPVNPIKERDYKQSDRKAIEDFKNYLERRGINVTVRREMGRDIDGACGQLR 367


>gi|169831742|ref|YP_001717724.1| radical SAM protein [Candidatus Desulforudis audaxviator MP104C]
 gi|205829744|sp|B1I501|RLMN_DESAP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|169638586|gb|ACA60092.1| radical SAM enzyme, Cfr family [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 318

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 124/329 (37%), Positives = 179/329 (54%), Gaps = 25/329 (7%)

Query: 40  KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIG 98
           +W++ +G      M+++    R  L     +   E++D ++S  G T K+LL      + 
Sbjct: 3   EWVFKQGALSLAEMTNLPAGFRKRLAGEAVVGRLEVLDSRVSAAGDTVKYLL-----GLD 57

Query: 99  GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
               +ETV +      T+CVSSQVGC + C FC +     +RNL + E+  QVL  R   
Sbjct: 58  DGHAVETVLMRHDYGRTVCVSSQVGCRMACRFCASALGGWIRNLRSGELYEQVLAVRR-- 115

Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
                          + G  ++++V+MGMGEPL N++N  K ++  +   GL  S+RRIT
Sbjct: 116 ---------------ASGEPVTHVVLMGMGEPLDNYENTLKFVANVTAPYGLRLSQRRIT 160

Query: 219 LSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
           LST G VP I ++  E + + LAISLHA +N LR+ LVP+NRKYPLE LI AC  Y    
Sbjct: 161 LSTCGLVPEIQKLARERLALTLAISLHAPNNALRDTLVPVNRKYPLEQLIPACAEY-ARR 219

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
             RR++FEY++L G+NDSP  A  L  +L G+   +NLIP NP P   Y     + + TF
Sbjct: 220 TGRRVSFEYILLGGVNDSPELARELSDLLTGLLGHVNLIPANPVPESGYRAPSPEAVRTF 279

Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLK 366
              ++  G    +R   G DI AACGQL+
Sbjct: 280 RRVLEEGGVPVSLRRELGADIGAACGQLR 308


>gi|283797835|ref|ZP_06346988.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1]
 gi|291074523|gb|EFE11887.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1]
          Length = 376

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 127/355 (35%), Positives = 200/355 (56%), Gaps = 33/355 (9%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH--FSIIYP 73
           ELE  L ++G        R  Q+++W++V+    F  M+++S+ +R  L +   ++ + P
Sbjct: 42  ELEAYLKEMGEKP----FRAKQLYQWMHVKLAASFDEMTNLSKGLRETLGRQCFYASLTP 97

Query: 74  EIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
             VD +IS  DGTRK+L         G V IE+V +  K   ++C+SSQVGC + C FC 
Sbjct: 98  --VDVRISAVDGTRKYLFELS----DGNV-IESVLMRYKHGNSVCISSQVGCRMGCRFCA 150

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           +    L RNL   E+L Q+                   +    G ++SN+V+MG GEP+ 
Sbjct: 151 STLDGLERNLKPSEMLEQIY-----------------RIQRDTGERVSNVVVMGSGEPMD 193

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLR 251
           N+DN+ + + + +D  GL+ S+R +T+ST G VP I +  EE + V LA+SLHA ++++R
Sbjct: 194 NYDNLIRFIHLLTDENGLNISQRNVTVSTCGIVPRIRQFAEEGLQVTLALSLHAPNDEVR 253

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             L+P+ + Y L  ++DAC HY      RR+TFEY ++KG+ND+  +A  L +++K    
Sbjct: 254 KTLMPVAKSYALRDVLDAC-HYYFEKTGRRLTFEYSLVKGVNDNLEEARALAELIKDQHG 312

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            +NLIP NP    +Y  SD+K I  F   ++R G +  +R   G DI  ACGQL+
Sbjct: 313 HVNLIPVNPIKERDYKQSDRKAIEDFKNYLERRGINVTVRREMGRDIDGACGQLR 367


>gi|182412656|ref|YP_001817722.1| radical SAM protein [Opitutus terrae PB90-1]
 gi|205829647|sp|B1ZVM5|RLMN2_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 2;
           AltName: Full=23S rRNA m2A2503 methyltransferase 2
 gi|177839870|gb|ACB74122.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1]
          Length = 428

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 136/375 (36%), Positives = 202/375 (53%), Gaps = 34/375 (9%)

Query: 16  ELEEALLKIGIPQRHVR-MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +   A L++ + +R +  +  ++IW ++Y+  +  F  M+++   VR  L     +   +
Sbjct: 57  DFTRAELRLWLSRRELNPVHAARIWSYLYLDLVEGFGAMTELPARVRARLEAEMCVGNLK 116

Query: 75  IVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           I  E  S DG TRK+LL      +     IETV +    R T CVSSQVGC++ C FC T
Sbjct: 117 IARETDSRDGFTRKYLLE-----LADGAAIETVLMRFAGRATACVSSQVGCAMGCVFCAT 171

Query: 134 GTQKLVRNLTAEEILLQ-VLLARSL-LGDFPGCEDIEGMVIPSVGR-------------- 177
           G     R+LTA EI+ Q V +AR+L    F  C     M  PS GR              
Sbjct: 172 GQMGYTRHLTAGEIVAQAVHVARALRTAAFEKCHV---MRDPSPGREAGEKSRDEADRHR 228

Query: 178 -----KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV- 231
                ++ N+V+MGMGEPL N++ V +++ I  D  GL+    RITLST G VP I R+ 
Sbjct: 229 APPTPRLRNLVLMGMGEPLHNYEAVMRAVDILRDDGGLALGAERITLSTVGVVPGILRLA 288

Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
            E+  V LA+SLHA   + R  LVP+ +K+PL+ L+ ACR Y   +  RR+ +E+ +++G
Sbjct: 289 AEKRPVHLAVSLHAADQEERAALVPVAKKWPLDELMAACRTY-SETTGRRVFYEWTLIEG 347

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS-GYSSPI 350
            ND+   A  + ++L+G+PA++NLIP NP  G +      +    F E + R     S +
Sbjct: 348 RNDTAAHARAVGRLLRGLPAQVNLIPLNPTAGYDGTPGRTEAARRFQEILSREFALPSTV 407

Query: 351 RTPRGLDILAACGQL 365
           R  RG+DI A CGQL
Sbjct: 408 RQRRGIDIAAGCGQL 422


>gi|313676931|ref|YP_004054927.1| 23S rRNA m(2)a-2503 methyltransferase [Marivirga tractuosa DSM
           4126]
 gi|312943629|gb|ADR22819.1| 23S rRNA m(2)A-2503 methyltransferase [Marivirga tractuosa DSM
           4126]
          Length = 360

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 189/337 (56%), Gaps = 26/337 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++W++++    F+ M+++S+ +R  L+Q++ I    I D+++S D T K   R 
Sbjct: 42  FRAKQIYEWLWMKSAASFEEMTNLSKNLREWLDQNYCINRITIADKQLSSDRTIKVAFR- 100

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +    E+E V IP ++R T CVSSQVGCSL+C FC TG  K +RNL A EI  QV+
Sbjct: 101 ----LHDGNEVEGVLIPTENRMTACVSSQVGCSLSCKFCATGYLKRMRNLEAAEIYDQVV 156

Query: 153 LARSLLG---DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           + + L     D P                +SNIV MGMGEPL N+ N+ +S+   +   G
Sbjct: 157 MIKELAETHYDMP----------------LSNIVYMGMGEPLLNYKNMMESIEHITSEKG 200

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLID 268
           L  S +RIT+ST+G    I ++ ++     LA+SLHA +++ R+ ++ IN    L +L +
Sbjct: 201 LHMSPKRITVSTAGISKMIKKLADDDAKFNLALSLHAANDEKRSQIMSINDSNNLPVLRE 260

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           A  +Y   +   R+TFEY +    NDS  DA  L +  K +PAK+NLI +NP    ++  
Sbjct: 261 ALEYYHSKT-KNRVTFEYCVFNNFNDSLEDAKELWQFTKYVPAKVNLIEYNPIDQADFTN 319

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +D+  +  F+  ++  G    +R  RG DI AACGQL
Sbjct: 320 TDEDKLDKFAAFLEDRGVIVNVRRSRGKDIDAACGQL 356


>gi|126649673|ref|ZP_01721909.1| Radical SAM family enzyme [Bacillus sp. B14905]
 gi|126593392|gb|EAZ87337.1| Radical SAM family enzyme [Bacillus sp. B14905]
          Length = 380

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 126/363 (34%), Positives = 204/363 (56%), Gaps = 25/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           KES+      +LEE L + G        R +QI+ W+Y + ++ F+ MS++S+ +R  L 
Sbjct: 34  KESIYSFQPHQLEEWLKENG----EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGLRDKLA 89

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F++     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC 
Sbjct: 90  ANFALSTLSTIIKQESKDGTIKFLFQ-----LQDGYSIETVLMRHEYGNSVCVTTQVGCR 144

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L R+L A EI+ QV+  +  L +              V  ++S+IV+M
Sbjct: 145 IGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTLDE--------------VSERVSHIVIM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
           G+GEP  N+D +   L + +   GL+   R IT+STSG VP I +   E++ +  A+SLH
Sbjct: 191 GIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFADEQLQINFAVSLH 250

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A + + R  L+PI R Y LE L++A R+Y      RR++FEY ++ G NDS   A  L  
Sbjct: 251 APNQEARQKLMPIARAYKLEELMEAVRYYTK-KTGRRVSFEYGLMSGENDSVEIAEELSA 309

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KGI   +NLIP N  P  +Y+ + +  I  F + +K++G +  IR  +G DI AACGQ
Sbjct: 310 LIKGIKCHVNLIPVNYVPERDYVRTSRSQIFAFEKTLKKNGINVTIRREQGSDIAAACGQ 369

Query: 365 LKS 367
           L++
Sbjct: 370 LRA 372


>gi|260911598|ref|ZP_05918183.1| cfr family radical SAM enzyme [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634304|gb|EEX52409.1| cfr family radical SAM enzyme [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 355

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 128/364 (35%), Positives = 197/364 (54%), Gaps = 30/364 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   +EL+   +  G+P         Q+  W+Y + +   + M++IS+  R  L QH+
Sbjct: 8   LLGHTLDELKAIAVDNGLPA----FAGKQMAVWLYDKHVDTIEEMTNISKANREKLAQHY 63

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I   + +D + S DGT K+L  FP     G   +ETVYIP++ R TLCVS QVGC + C
Sbjct: 64  EIGAAKFIDAQYSKDGTIKYL--FPTE--SGKF-VETVYIPDRDRATLCVSCQVGCKMNC 118

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG Q    NLTA +IL Q+                    +P   +K++NIV MG G
Sbjct: 119 LFCQTGKQGFEGNLTARDILNQIY------------------ALPE-QQKLTNIVFMGQG 159

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EP+ N DNV K   I +   G ++S +RIT+S+ G    + R  +E    +AIS+H    
Sbjct: 160 EPMDNLDNVLKVTQILTADYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHTPIP 219

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           + R  ++P  +   +E ++   + Y   ++ RR++FEY+M  G+ND+P  A  L+K+++G
Sbjct: 220 EQRASIMPAEKGLSIEEIVQLLKQYD-FTHQRRLSFEYIMFGGLNDTPLHARQLVKLVEG 278

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +  ++NLI F+  P      SD+K + TF + +   G  + IR  RG DI AACG L S 
Sbjct: 279 LDCRVNLIRFHQIPNVNLNNSDEKRMETFRDYLTNHGVFTTIRASRGQDIFAACGLL-ST 337

Query: 369 SKRI 372
           +K+I
Sbjct: 338 AKQI 341


>gi|254519239|ref|ZP_05131295.1| radical SAM protein [Clostridium sp. 7_2_43FAA]
 gi|226912988|gb|EEH98189.1| radical SAM protein [Clostridium sp. 7_2_43FAA]
          Length = 343

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 127/336 (37%), Positives = 192/336 (57%), Gaps = 26/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLR 91
            R  Q++ WIY + I +F  M ++ + +   L  +F I  PE+V++  S  DGT+K LL 
Sbjct: 24  FRAKQVFSWIY-KNIWNFDDMKNLPKSLVEKLKGNFYIGIPEVVEKYESTLDGTQKLLLA 82

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
           F    I     IE+V +  K   ++C+S+Q+GC + C FC +  +  VRNLT+ EIL +V
Sbjct: 83  FDDGNI-----IESVIMKYKHGNSICISTQIGCRMGCKFCASTLEGRVRNLTSGEILSEV 137

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           ++A+ ++G+                 +ISNIV+MG GEPL N++NV K L + +   GL+
Sbjct: 138 IIAQKVIGE-----------------RISNIVLMGSGEPLDNYENVTKFLDLVNADYGLN 180

Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
             +R ITLST G VP I  + ++   + LAISLHA S++ R  ++PI  KY ++ +++AC
Sbjct: 181 IGQRHITLSTCGLVPKIYELADKGYSITLAISLHAFSDEKRREIMPIANKYSIKEILEAC 240

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
            +Y   +  RRITFEY ++ GIND   DA +L K+LKG    +NLIP N           
Sbjct: 241 DYYFEKT-GRRITFEYSLVSGINDGKEDAKSLSKLLKGRQCHVNLIPVNEIKENTLKRPS 299

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +K I  F + +  +G    +R   G DI AACGQL+
Sbjct: 300 KKTIEEFEKIVNENGIEVTVRREMGNDINAACGQLR 335


>gi|89895437|ref|YP_518924.1| hypothetical protein DSY2691 [Desulfitobacterium hafniense Y51]
 gi|123279892|sp|Q24U12|RLMN_DESHY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|89334885|dbj|BAE84480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 357

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 206/376 (54%), Gaps = 37/376 (9%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN +K+     + + EL +   ++G+P    + R  Q+++W+  + +++++ + +I    
Sbjct: 1   MNTMKRMDCRDLNQSELTQHCAELGLP----KFRGRQVFQWVQQKAVQNWEELKNIGAGD 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI-----PEKSRGT 115
           R  L     +     V E+IS DGTRK+L R    C  G   +E V +       + R T
Sbjct: 57  RQKLQDGLFLQPLRKVREQISQDGTRKFLFR----CADGET-LECVLMDYDRRKNRDRHT 111

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL----LARSLLGDFPGCEDIEGMV 171
           +CVS+Q+GC++ C+FC TG     RNL+  EIL QVL    L R    DF          
Sbjct: 112 VCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQVLDITYLMRQEDPDF---------- 161

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
                 +++NIV MGMGEPL N++ V K++ + +D  G     RR+T+STSG  P I ++
Sbjct: 162 ------QVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSGVAPKIRQL 215

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            ++   V LA+SLH+  N  R+ L+P+NRKYPLE L++ACR Y  L+N RRITFE  ++ 
Sbjct: 216 AKDNPQVGLAVSLHSAHNTTRDQLIPMNRKYPLEELMEACRDYTTLTN-RRITFEIALIS 274

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           G   +   A  +  +LK   A +NLIP NP  G        K++  F++C++  G    +
Sbjct: 275 G-QATLEAAQAVGHLLKRQLAHVNLIPVNPVAGTGMARPTAKEVQQFAQCLESMGIPVSV 333

Query: 351 RTPRGLDILAACGQLK 366
           R  +G DI AACGQL+
Sbjct: 334 REEKGTDIDAACGQLR 349


>gi|156743521|ref|YP_001433650.1| ribosomal RNA large subunit methyltransferase N [Roseiflexus
           castenholzii DSM 13941]
 gi|205829869|sp|A7NPY6|RLMN_ROSCS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|156234849|gb|ABU59632.1| radical SAM enzyme, Cfr family [Roseiflexus castenholzii DSM 13941]
          Length = 399

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 140/384 (36%), Positives = 207/384 (53%), Gaps = 46/384 (11%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL--NQHFSIIYP 73
           E+E  L   G P      R  Q+++ +YV        M+D+   +R  L      + + P
Sbjct: 22  EMERLLTDWGQPT----YRARQVFRQLYVNLADTPLAMTDLPLALRERLANETRLAPVTP 77

Query: 74  EIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
           E V  + + +G TRK L R P   +     +E+V +    R T+CVS+Q GC++ C FC 
Sbjct: 78  EQV--QTADNGLTRKALFRLPNGAL-----VESVLMIYLDRATVCVSTQAGCAMGCVFCA 130

Query: 133 TGTQKLVRNLTAEEILLQVLLA----RSLLGDFP-------------GCEDIEGMV--IP 173
           TGT  L+RNL+  EI+ QV+ A    R L G  P               +D+E     +P
Sbjct: 131 TGTLGLLRNLSPGEIVAQVVWAAREMRRLAGRPPRPTMRQPEDDAWWSPDDLENDAPSVP 190

Query: 174 SVG--RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
            V     ++NIV MGMGEP   +D   +++ I  D  GL+   R +T+ST G VP I R+
Sbjct: 191 EVSSVSHVTNIVFMGMGEPFATYDRWWRAVEIIHDPRGLNIGARSMTVSTVGLVPGIRRL 250

Query: 232 G-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E + + LA+SLHA  +DLR+ L+PINR+YPL +L+DA R Y   +  RR++FEYV+L+
Sbjct: 251 ATETLPINLAVSLHAPDDDLRSALMPINRRYPLAVLLDATRDYLA-ATGRRVSFEYVLLQ 309

Query: 291 GINDSPRDALNLIKILK------GIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           G ND P  A  L  +L+      G+P     +NLIP+NP PG     S+++ ++TF   +
Sbjct: 310 GKNDEPEHAAKLAALLRGEAGPAGLPLHLVHVNLIPWNPVPGMPLGRSERRRVLTFQRIL 369

Query: 342 KRSGYSSPIRTPRGLDILAACGQL 365
           +  G +  +R  RG+ I AACGQL
Sbjct: 370 RERGIACTVRVERGVAIAAACGQL 393


>gi|319649619|ref|ZP_08003775.1| hypothetical protein HMPREF1013_00379 [Bacillus sp. 2_A_57_CT2]
 gi|317398781|gb|EFV79463.1| hypothetical protein HMPREF1013_00379 [Bacillus sp. 2_A_57_CT2]
          Length = 361

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 191/340 (56%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI+ W+Y + I  F+ M+++S+ +R  L+ +FS+   + + ++ S DGT K+L   
Sbjct: 38  FRAEQIFDWLYTKRITSFEDMTNLSKGLRDTLSANFSLTTLKTIIQQESADGTIKFLFE- 96

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +      ++CV++QVGC + C+FC +    L RNL A EI+ QV+
Sbjct: 97  ----LHDGYSIETVLMRHDYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 152

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S++V+MG+GEP  N+D++   L I +   GL+ 
Sbjct: 153 KVQQALDE--------------TDERVSSVVIMGIGEPFDNYDSMLSFLKIINHDKGLNI 198

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I +  +E + +  AISLHA + ++R+ L+PINR Y L  L+D+ R
Sbjct: 199 GARHITVSTSGIIPKIYKFADENMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMDSIR 258

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RR++FEY +  G+ND    A  L K++K +   +NLIP N  P  +Y+ + +
Sbjct: 259 YYIN-KTGRRVSFEYGLFGGVNDQVEHAEELAKLIKNVKCHVNLIPVNYVPERDYVRTPK 317

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             I  F + +K  G +  IR   G DI AACGQL++  ++
Sbjct: 318 DQIFAFEKTLKNHGINVTIRREHGHDIDAACGQLRAKERK 357


>gi|94968595|ref|YP_590643.1| hypothetical protein Acid345_1567 [Candidatus Koribacter versatilis
           Ellin345]
 gi|122986342|sp|Q1IRD1|RLMN_ACIBL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|94550645|gb|ABF40569.1| 23S rRNA m(2)A-2503 methyltransferase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 346

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 131/350 (37%), Positives = 203/350 (58%), Gaps = 38/350 (10%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSIIYPEIVDEKISCDGTRKWLLRF 92
           R+ Q+W+ +Y   I      + +   +R  L    ++I +P +     S DGT ++LL+F
Sbjct: 10  RSRQLWQGLYRDRIASLDQFTTLPIPLREELKSSGWAIAFPFVQKRFTSTDGTVRYLLQF 69

Query: 93  PARCIGGPVEIETVYIPEK---------------SRGTLCVSSQVGCSLTCSFCYTGTQK 137
                     +ETV++PE                 R T+CVSSQVGC++ C FC T    
Sbjct: 70  -----SDGQSVETVWMPEGDGGEQGDGSEDGPSYDRATICVSSQVGCAVDCQFCMTALLG 124

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
           L+RNL+A EI+ Q+L   ++L D    E+++      V +   N+V MG GEP  NFDN 
Sbjct: 125 LLRNLSAGEIVGQIL---AVLKD----ENVD------VEKSRINLVFMGQGEPFLNFDNF 171

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVP 256
            K++++ ++++G+  S  R+T+STSG VP I   G+  I   LAISL+A +++ R  L+P
Sbjct: 172 VKAVTLLAEAVGIPES--RMTVSTSGIVPRIVDFGQLAIRPKLAISLNASNDESRRELMP 229

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
           I +K+ LE L+ A R +P L N  R+TFEYV+L G+NDS ++A  ++++L+G+ AK+NLI
Sbjct: 230 ITKKWTLEKLMSAAREFP-LRNRERMTFEYVLLGGVNDSEQNAREVVQLLRGLRAKVNLI 288

Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            +NP P   +   D + +  F + +  +G  + IR PRG DI AACGQLK
Sbjct: 289 AWNPGPEIPFSTPDPQHVEAFQQILIDAGIPTFIRKPRGRDIFAACGQLK 338


>gi|298245810|ref|ZP_06969616.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963]
 gi|297553291|gb|EFH87156.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963]
          Length = 388

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 136/351 (38%), Positives = 196/351 (55%), Gaps = 31/351 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC--DGTRKWLL 90
            R  QI+ WIY + + +F  MS++  ++R  L +  + I P +V  ++S   D TRK LL
Sbjct: 41  FRAKQIYSWIYQQLVDNFAAMSNLPLKLRQRLEEE-ACIGPLVVRSEVSSKDDRTRKILL 99

Query: 91  RFPARCIGGPVE-IETVYIP---EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
                  G  +E +  +Y P     +R T+CVSSQ GC+  C+FC TG     R+L + E
Sbjct: 100 EL---ADGKLIESVLMLYPPLGESSARATICVSSQAGCAFGCTFCATGQMGFDRHLQSGE 156

Query: 147 ILLQVL-LARSL------LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           I+ QVL  AR L          PG   I+          I+NIV+MGMGEPL N+DNV +
Sbjct: 157 IIAQVLHFARELRATPWSAAGLPGSTPID---------HITNIVLMGMGEPLHNYDNVLQ 207

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPIN 258
           +L I + + G +   R +T+ST G VP I ++  E++ V LAISLHA +N+ R+  +P+N
Sbjct: 208 ALRILNSAAGFNLGARHMTVSTVGLVPAIRKLSQEQLQVNLAISLHAPTNEARSQTMPVN 267

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLI 316
           RKYPLE L+ AC+ Y   +  R++TFEYV+L G+ND+P  A  L ++L  +   A +N I
Sbjct: 268 RKYPLEELLAACQDYIAATR-RQVTFEYVLLAGVNDTPERAQQLAELLAPLKQFAHVNCI 326

Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           P N      Y       I  F   +   G S+ +R  RG DI AACGQL++
Sbjct: 327 PVNA-TSAGYRPPGPDAIRAFRNILFERGISNSVRAERGDDIAAACGQLRT 376


>gi|227484655|ref|ZP_03914971.1| Fe-S-cluster redox enzyme [Anaerococcus lactolyticus ATCC 51172]
 gi|227237375|gb|EEI87390.1| Fe-S-cluster redox enzyme [Anaerococcus lactolyticus ATCC 51172]
          Length = 340

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 189/340 (55%), Gaps = 26/340 (7%)

Query: 30  HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-KISCDGTRKW 88
           + + R  Q+++ I+V  + DF  M+D+  ++R  L   F     +++   +   D T+K+
Sbjct: 21  YQKFRAKQVFRAIHVNRLNDFDEMTDLPLKMREDLKADFKFERIKVLKTFESKIDSTKKY 80

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           LL  P + I     +E VY+  K R T+C+SSQVGC + CSFC +    LVRN+TA E++
Sbjct: 81  LLELPDKNI-----VEAVYMDYKDRSTICISSQVGCRMGCSFCASTKNGLVRNMTASELI 135

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            +V L   L G                   ISNIV+MG+GEPL NFD++KK + I +D  
Sbjct: 136 EEVYLLERLNG------------------PISNIVIMGIGEPLDNFDHIKKFIEIITDPS 177

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           G + S R ITLSTSG  P I  + +  + V LA+SLH   +  R + +P+ +KY ++ LI
Sbjct: 178 GRNLSHRSITLSTSGLSPRIKDLADTGLDVNLALSLHYADDKKRAVYMPVAKKYSIKDLI 237

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
           DA  +Y      RR++FEYV++ G+N+   D  NL  +L G    INLIP NP     + 
Sbjct: 238 DATDYYFD-KTGRRVSFEYVVIDGVNNLTEDVENLRDLLFGKNVHINLIPLNPIEEFNHK 296

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
               + +  F + + + G ++ IR   G+DI A+CGQL++
Sbjct: 297 KPGARVLEDFKQRLIKRGLNATIRRSMGIDIDASCGQLRN 336


>gi|323141165|ref|ZP_08076066.1| 23S rRNA m2A2503 methyltransferase [Phascolarctobacterium sp. YIT
           12067]
 gi|322414308|gb|EFY05126.1| 23S rRNA m2A2503 methyltransferase [Phascolarctobacterium sp. YIT
           12067]
          Length = 351

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/357 (36%), Positives = 200/357 (56%), Gaps = 28/357 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII--Y 72
           EEL++  +  G+     + R  Q+++W+Y + + DF  M ++S+    +L + F+++   
Sbjct: 10  EELQDLFVAAGLK----KFRAKQVFQWLYQKSVFDFTAMHNLSKADIAVLQEKFTVLPHS 65

Query: 73  PEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
            EI+ E+ S DG T K LL  P    G  VE  TV +      ++CVSSQVGC + C+FC
Sbjct: 66  LEILREQNSSDGMTSKLLLGLPD---GNSVE--TVLMHHDYGYSVCVSSQVGCDMHCAFC 120

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            +G +  VRNLTA EI+ QV L    L +               G  +S +V+MG GEP+
Sbjct: 121 ASGLKGAVRNLTAAEIVAQVYLFNERLRE--------------QGAMVSRVVVMGSGEPM 166

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDL 250
            NFD+V ++L         + S R +T+ST G +P I R+ E+   + LAISLHAV N+L
Sbjct: 167 LNFDSVLQALDFLHREDTCNMSYRNMTISTCGIIPGIKRLEEQGNPINLAISLHAVKNEL 226

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R  L+P+N+ YP   ++ A   Y   S  R+IT+EY++LKG NDSP+DA  L   L+   
Sbjct: 227 RTALMPVNKGYPFVDVLTAAESYSKAS-GRQITYEYILLKGKNDSPQDAELLSNYLRYKQ 285

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           A +NLIP NP P   +    +  +  F   ++++  ++ +R   G DI AACGQL++
Sbjct: 286 ASVNLIPANPVPEQGFERPSKAAVERFLRILQKNRINATVRKEMGKDIDAACGQLRA 342


>gi|190150594|ref|YP_001969119.1| hypothetical protein APP7_1325 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|189915725|gb|ACE61977.1| hypothetical protein APP7_1325 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
          Length = 274

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/270 (43%), Positives = 165/270 (61%), Gaps = 20/270 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKINLMNLTRQEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++       G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KQIAEIKAPEVSVEQRSSDGTIKWAMQV------GDQQIETVYIPEDDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F     + G+      R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP +  + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           A +++LR+ ++PIN+KY ++ML+D+   YP
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYP 274


>gi|205373324|ref|ZP_03226128.1| YloN [Bacillus coahuilensis m4-4]
          Length = 362

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 195/340 (57%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +Q+++W+Y++ +  F+ M+++S+ +R  L + F +   + + ++ S DGT K+L   
Sbjct: 39  FRAAQVFEWLYIKRVTSFEDMTNLSKPLRDKLTESFEMTTLKTLIQQQSSDGTIKFLFE- 97

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +  +   ++CV++QVGC + C+FC +    L RNL A EI+ QVL
Sbjct: 98  ----LHDGYSIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVL 153

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S++V+MG+GEP  N++++   L   ++  GL+ 
Sbjct: 154 KVQQALDE--------------TEERVSSVVIMGIGEPFDNYESMMSFLRTINNEKGLNI 199

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I +  +E   +  AISLHA + +LR+ L+PINR Y L  L+DA +
Sbjct: 200 GARHITVSTSGIIPKIYKFADEKTQINFAISLHAANTELRSRLMPINRAYKLPDLMDAVK 259

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RR++FEY +  G+NDS   A  L  ++K +   INLIP N  P  +Y+ + +
Sbjct: 260 YYID-KTGRRVSFEYGLFGGVNDSVEHAEELADLVKDVKCHINLIPVNYVPERDYVRTPK 318

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           + I  F + +K+ G +  IR  +G DI AACGQL++  ++
Sbjct: 319 EKIFEFEKALKKRGVNVTIRREQGHDIDAACGQLRAKERK 358


>gi|149180610|ref|ZP_01859114.1| hypothetical protein BSG1_16675 [Bacillus sp. SG-1]
 gi|148851763|gb|EDL65909.1| hypothetical protein BSG1_16675 [Bacillus sp. SG-1]
          Length = 358

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/377 (37%), Positives = 214/377 (56%), Gaps = 32/377 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+  ++L   +++ G      + R +QIW W+Y + + +F  M +I      L
Sbjct: 1   MEKNSIYGLTIDQLTSWIVENG----EKKFRAAQIWDWLYKKRVTNFADMKNIGANCITL 56

Query: 64  L--NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  N H   +  EI  E  S DGT K+L +     +     IETV +      ++CV++Q
Sbjct: 57  LEENFHLGTLKEEIKQE--SKDGTIKFLFKLQDGNL-----IETVLMKFNYGYSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ CSFC +G  K  R+L++ EI+ Q++  +  L D  G ++           ++S+
Sbjct: 110 VGCNIGCSFCASGLLKKNRDLSSGEIVEQIMNVQLHL-DSKGNDE-----------RVSH 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           IV+MG+GEP  N+DN+   L + +D  GLS   R IT+STSG    I    +E I V LA
Sbjct: 158 IVVMGIGEPFDNYDNLMDFLRVVNDQKGLSIGARHITVSTSGLANRIYDWADENIQVNLA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +N+LR  ++ IN+ YPLE L+ A  +Y   +N RRITFEY++L+ +ND   +AL
Sbjct: 218 VSLHAPNNELRTQIMKINKAYPLEKLMPAIDYYLEKTN-RRITFEYILLQDVNDHKAEAL 276

Query: 301 NLIKILKGIP--AKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L K+LK     + +NLIP+NP     +Y  S ++ IV F   +   G +  +RT  G D
Sbjct: 277 QLAKLLKNKKHLSYVNLIPYNPVDEHGQYQRSTKEAIVEFYGTLLDQGINCGVRTEHGTD 336

Query: 358 ILAACGQLKSLSKRIPK 374
           I AACGQL+  SK+I K
Sbjct: 337 IDAACGQLR--SKQIKK 351


>gi|225377867|ref|ZP_03755088.1| hypothetical protein ROSEINA2194_03526 [Roseburia inulinivorans DSM
           16841]
 gi|225210305|gb|EEG92659.1| hypothetical protein ROSEINA2194_03526 [Roseburia inulinivorans DSM
           16841]
          Length = 347

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 193/338 (57%), Gaps = 29/338 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL--NQHFSIIYPEIVDEKIS-CDGTRKWL 89
            R  QI++W++V+    F  M++IS+ +   L  N H   I  E V  +IS  DGTRK+L
Sbjct: 29  FRAKQIYQWLHVKQAASFDEMTNISKALIEKLKENSHLVSIKQEAV--QISKIDGTRKYL 86

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
                    G V IE+V++  K   ++C+SSQVGC + C FC +    LVR LT  E+L 
Sbjct: 87  FLLD----DGNV-IESVFMRYKHGNSVCISSQVGCRMGCRFCASTLDGLVRGLTPSEMLD 141

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q+                   +    G ++SN+V+MG GEP+ NFDN+ K + + +D  G
Sbjct: 142 QIY-----------------QIGRDTGERVSNVVVMGTGEPMDNFDNLLKFIELLTDENG 184

Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           L+ S+R +T+ST G VP +  + ++ + + LA+SLHA + + R  L+P+  KY +  +ID
Sbjct: 185 LNISQRNVTVSTCGIVPRMRELADKKLQITLALSLHASTQEKRLELMPVANKYEIHEVID 244

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC++Y   +  RR+TFEY ++ G+ND+  D  NL +++KGI   +NLIP NP    +Y+ 
Sbjct: 245 ACKYYFEQT-GRRVTFEYSLVGGVNDTDEDVRNLCRLIKGINCHVNLIPVNPIKERDYVQ 303

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            D +    F   ++++G ++ IR   G DI  ACGQL+
Sbjct: 304 PDVRVTTEFKNKLEKNGINATIRREMGRDIDGACGQLR 341


>gi|126700199|ref|YP_001089096.1| radical SAM protein [Clostridium difficile 630]
 gi|255101744|ref|ZP_05330721.1| radical SAM protein [Clostridium difficile QCD-63q42]
 gi|255307613|ref|ZP_05351784.1| radical SAM protein [Clostridium difficile ATCC 43255]
 gi|123066578|sp|Q182S0|RLMN_CLOD6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|115251636|emb|CAJ69469.1| putative radical SAM-family protein [Clostridium difficile]
          Length = 343

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/338 (37%), Positives = 196/338 (57%), Gaps = 30/338 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI---VDEKISCDGTRKWL 89
            R SQI+ WIY +G + F  M++I + +R+ L +   I + +I   ++ K+  D T+K+L
Sbjct: 28  FRGSQIFSWIY-KGAKTFDDMNNIPKSLRNKLEEVSCIGHIDIELKLESKV--DNTKKYL 84

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
                  I     IETV +   SR T+CVS+QVGC + C+FC +    L+RNL   EIL 
Sbjct: 85  FLLDDGNI-----IETVMMDYDSRVTVCVSNQVGCRMGCNFCASTMDGLIRNLEPWEILD 139

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           QV+                  +    G+++SN+V+MG GEPL NF+N K+ L I ++  G
Sbjct: 140 QVI-----------------KIQEDTGKRVSNLVLMGSGEPLDNFENTKQFLKIINEKNG 182

Query: 210 LSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           L+   R ITLST G VP +  + + EI + LA+SLH+  ++ R  ++P+   Y +E +++
Sbjct: 183 LNIGYRHITLSTCGIVPKMYELADLEIAINLALSLHSPYDEERRKIMPVANAYSIEEILN 242

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           ACR+Y   +N RR+TFEY ++KG+NDS ++A  L K+LKG+   +NLIP N     EY  
Sbjct: 243 ACRYYIKKTN-RRVTFEYSLIKGVNDSEKEAKALAKLLKGMLCHVNLIPINKVEEREYEK 301

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            D+  I  F + ++++   + +R   G DI  ACGQL+
Sbjct: 302 PDKAFIYKFRDSLEKNNIPATVRMSMGSDISGACGQLR 339


>gi|291527115|emb|CBK92701.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium rectale M104/1]
          Length = 354

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 206/365 (56%), Gaps = 31/365 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  +EL E ++ +G      + R  QI++WI+V+ +  F  M++IS++   +L  +  +I
Sbjct: 14  MNMDELTEFIISLG----EKKFRAKQIYEWIHVKHVESFDEMTNISKKFIQVLKDNAILI 69

Query: 72  YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
             +  + ++S  DGTRK+L         G V IE+V +  K   ++C+SSQVGC + C F
Sbjct: 70  SLKKEEVQVSKLDGTRKYLFALD----DGNV-IESVLMKYKHGNSVCISSQVGCRMGCRF 124

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +    LVR L   E++ Q+                   +   +G +ISN+V+MG GEP
Sbjct: 125 CASTLDGLVRGLRPSEMIDQIY-----------------QIGKDIGERISNVVVMGTGEP 167

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
           L N+DN+ + + + +D  G++ S+R +T+ST G VP + ++ +E + + LA+SLHA + +
Sbjct: 168 LDNYDNLLRFIELLTDENGINISQRNLTVSTCGLVPRMRQLADEKLSITLALSLHASNQE 227

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R  L+P+   Y +  ++DAC++Y   +  RR+TFEY ++ G+ND+  DA  L  ++ G+
Sbjct: 228 KRKALMPVANSYDIHDVVDACKYYFAQT-GRRVTFEYSLVGGVNDTAEDAAELSALVHGM 286

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
              INLIP NP    +Y+ S++  I  F   ++++G +  IR   G DI  ACGQL+   
Sbjct: 287 NCHINLIPVNPIKERDYVQSNKGVIEAFKNRLEKNGINVTIRREMGRDIDGACGQLR--K 344

Query: 370 KRIPK 374
           K I K
Sbjct: 345 KHIDK 349


>gi|288800113|ref|ZP_06405572.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333361|gb|EFC71840.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 344

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 198/365 (54%), Gaps = 29/365 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L+GM   EL++A+  +G+ +        QI KW+Y + +     M++IS+  R  L 
Sbjct: 5   KQALLGMSLFELKQAVTNLGMAE----FTAKQIAKWLYSQHVSSIDEMTNISKSNREKLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I     +D + S DGT K+L  FP +   G   +ETVYIP+K R TLCVSSQVGC 
Sbjct: 61  EHFYIGCANFIDAQYSKDGTIKYL--FPTQ--SGKF-VETVYIPDKDRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLT+ +IL Q+                    +P    K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGNLTSCDILNQIY------------------SLPERD-KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ NFDNV ++  I +   G ++S +RIT+S+ G    + R   E    +AIS+H 
Sbjct: 157 GQGEPMDNFDNVLRTTQILTSDYGYAWSPKRITVSSVGVKGKLERFLNESDCHVAISMHN 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  ++P  +   ++ +++  R+Y   ++ RR++FEY++  G+ND+   A  ++ +
Sbjct: 217 PIASERESIMPAEKGMSIDSIVELLRNYD-FAHQRRLSFEYIIFDGLNDTKEHAQYIVDL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++G+  + NLI F+  P      +++K +  F + +   G  + IR  RG DI AACG L
Sbjct: 276 VRGLECRFNLIRFHQIPNVSLNPTNEKKMELFRDYLTSHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSK 370
            +  K
Sbjct: 336 STAKK 340


>gi|238924694|ref|YP_002938210.1| radical SAM enzyme, Cfr family [Eubacterium rectale ATCC 33656]
 gi|238876369|gb|ACR76076.1| radical SAM enzyme, Cfr family [Eubacterium rectale ATCC 33656]
          Length = 354

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 206/365 (56%), Gaps = 31/365 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  +EL E ++ +G      + R  QI++WI+V+ +  F  M++IS++   +L  +  +I
Sbjct: 14  MNMDELTEFIISLG----EKKFRAKQIYEWIHVKHVDSFDEMTNISKKFIQVLKDNAILI 69

Query: 72  YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
             +  + ++S  DGTRK+L         G V IE+V +  K   ++C+SSQVGC + C F
Sbjct: 70  SLKKEEVQVSKLDGTRKYLFALD----DGNV-IESVLMKYKHGNSVCISSQVGCRMGCRF 124

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +    LVR L   E++ Q+                   +   +G +ISN+V+MG GEP
Sbjct: 125 CASTLDGLVRGLRPSEMIDQIY-----------------QIGKDIGERISNVVVMGTGEP 167

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
           L N+DN+ + + + +D  G++ S+R +T+ST G VP + ++ +E + + LA+SLHA + +
Sbjct: 168 LDNYDNLLRFIELLTDENGINISQRNLTVSTCGLVPRMRQLADEKLAITLALSLHASNQE 227

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R  L+P+   Y +  ++DAC++Y   +  RR+TFEY ++ G+ND+  DA  L  ++ G+
Sbjct: 228 KRKALMPVANSYDIHDVVDACKYYFAQT-GRRVTFEYSLVGGVNDTAEDAAELSALVHGM 286

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
              INLIP NP    +Y+ S++  I  F   ++++G +  IR   G DI  ACGQL+   
Sbjct: 287 NCHINLIPVNPIKERDYVQSNKGVIEAFKNRLEKNGINVTIRREMGRDIDGACGQLR--K 344

Query: 370 KRIPK 374
           K I K
Sbjct: 345 KHIDK 349


>gi|332826949|gb|EGJ99746.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 335

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 186/347 (53%), Gaps = 29/347 (8%)

Query: 25  GIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG 84
           G+P    R    QI  W+Y + +     M++IS   R LL++ + +     ++ + S DG
Sbjct: 14  GLP----RFAAKQIADWVYKKRVTSIDQMTNISVANRALLSEKYDVGRYIPLEFQQSVDG 69

Query: 85  TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
           T K+L +     +     IE V IPE  R TLCVSSQVGC + C FC TG Q    NLTA
Sbjct: 70  TVKYLFKTENDKL-----IEAVMIPEDDRATLCVSSQVGCKMNCLFCMTGKQGFNGNLTA 124

Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
            EIL Q+   R         ED+            +N+V MGMGEPL N++ +KK+L I 
Sbjct: 125 NEILNQLYSVRE-------AEDL------------TNVVFMGMGEPLDNYEQLKKTLEIM 165

Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264
           +   G+++S +RIT+ST+G  P + R  +E    LAIS+H+   + R  ++P  + +P+ 
Sbjct: 166 TADYGMAWSPKRITVSTTGVTPKLKRFLDESNAHLAISIHSPEKEQRLSIMPAEKAFPIA 225

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
            ++D  + Y   +  RR++FEY+M    NDS   A  L ++L+GI  ++NLI F+  P  
Sbjct: 226 GVMDLLKEYD-WTKQRRLSFEYIMFDNFNDSLVHAKELAQMLRGIECRVNLIRFHAIPNV 284

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
               S ++ +  F + +   G +S IR  RG DI AACG L ++  +
Sbjct: 285 NLKTSTKEKMEAFRDYLTSKGVTSTIRASRGEDIFAACGMLSTMKSK 331


>gi|304437062|ref|ZP_07397025.1| cfr family radical SAM enzyme [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370013|gb|EFM23675.1| cfr family radical SAM enzyme [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 346

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 202/364 (55%), Gaps = 30/364 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++ G M+ EL +AL + GIP    R R  QI +W+Y RG   F  M ++ + +R  L + 
Sbjct: 2   NIFGWMKTELADALREEGIP----RFRADQIIRWMYQRGAVSFDVMDNLPKLLRAQLAER 57

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           FSI  P++     S DG T K L  F           ETV +      ++CVS+Q GC +
Sbjct: 58  FSIERPQVGARLTSADGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCVSTQAGCRM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L RNLT  EI  QV+          G  D     +   G ++  IV+MG
Sbjct: 113 GCAFCASTLHGLARNLTVGEIAAQVI----------GMAD----YLRQEGARVDTIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
            GEP+ N+DNV  +L +  A +++GLS+  R +TLSTSG VP I R+ EE + + L+ISL
Sbjct: 159 SGEPMENYDNVIGALRLLHAEETIGLSY--RGMTLSTSGIVPGILRLAEEGLPISLSISL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + +LR+ L+P+NR YP+  ++ A   Y   +  RR+T+EY++++ +ND  R+A  L 
Sbjct: 217 HAPTEELRSSLMPVNRMYPMAEVLRAAELYAARTK-RRVTYEYILIRDVNDGVREAEQLA 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L+G  A +NLIP +P          ++ ++ F   ++    ++ +R   G DI AACG
Sbjct: 276 RLLRGQLASVNLIPIDPVAERHLFRPPRETVLRFQRILEAHHVTATVRREMGTDIQAACG 335

Query: 364 QLKS 367
           QL+S
Sbjct: 336 QLRS 339


>gi|189218104|ref|YP_001938746.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4]
 gi|189184962|gb|ACD82147.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4]
          Length = 314

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/300 (42%), Positives = 177/300 (59%), Gaps = 30/300 (10%)

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE-KSRG-----TLCVSSQVGCSLT 127
           E++ EK S DGT+K+L +    C G    IETV IP   SRG     TLCVS+QVGC+L 
Sbjct: 2   ELIHEKQSIDGTKKFLWQL---CDGHA--IETVLIPATDSRGSSERLTLCVSTQVGCALG 56

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +G     RNL+  EI+ QVLL+ S+                 V +++S+IV MGM
Sbjct: 57  CHFCASGLLGFKRNLSCGEIVEQVLLSESI-----------------VKQRVSHIVFMGM 99

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246
           GEPL N+D + KS+ + S S G+  S R+IT+STSG  P I ++  E +   LA+SLHA 
Sbjct: 100 GEPLLNYDQLIKSIRLISSSWGIGISPRKITISTSGIAPRIRKLALETLPFRLAVSLHAT 159

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +++LR+ ++PIN KYPL  LI +C  +      ++IT EY+++ G+ND   DA  L +I 
Sbjct: 160 TDELRSKIMPINSKYPLSELIKSCEEFCS-RRKQKITLEYILISGLNDRREDAERLARIA 218

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             + AK+NLIP+NP     +   DQK+ ++F   +K       IR  RG DI  ACGQL+
Sbjct: 219 TSLRAKVNLIPYNPIERLAWKSPDQKEQLSFFRWLKNKAVQVSIRKERGRDIDGACGQLR 278


>gi|15902720|ref|NP_358270.1| hypothetical protein spr0676 [Streptococcus pneumoniae R6]
 gi|116516867|ref|YP_816163.1| hypothetical protein SPD_0669 [Streptococcus pneumoniae D39]
 gi|81588140|sp|Q8DQG7|RLMN_STRR6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|122278951|sp|Q04LD5|RLMN_STRP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|15458264|gb|AAK99480.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116077443|gb|ABJ55163.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
           D39]
          Length = 361

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 210/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QV 
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVD 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +   K  R+L   EI+ Q++L +    +    E            ++S+IV
Sbjct: 111 CNIGCTFCASDLIKKQRDLNNGEIVAQIMLVQKYFAERGQDE------------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STSG    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFVCTINDDKGMAIGARHITVSTSGLAHKIRNFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +NDS   AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDSVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEYGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|291526151|emb|CBK91738.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium rectale DSM
           17629]
          Length = 341

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 206/365 (56%), Gaps = 31/365 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  +EL E ++ +G      + R  QI++WI+V+ +  F  M++IS++   +L  +  +I
Sbjct: 1   MNMDELTEFIISLG----EKKFRAKQIYEWIHVKHVESFDEMTNISKKFIQVLKDNAILI 56

Query: 72  YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
             +  + ++S  DGTRK+L         G V IE+V +  K   ++C+SSQVGC + C F
Sbjct: 57  SLKKEEVQVSKLDGTRKYLFALD----DGNV-IESVLMKYKHGNSVCISSQVGCRMGCRF 111

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +    LVR L   E++ Q+                   +   +G +ISN+V+MG GEP
Sbjct: 112 CASTLDGLVRGLRPSEMIDQIY-----------------QIGKDIGERISNVVVMGTGEP 154

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
           L N+DN+ + + + +D  G++ S+R +T+ST G VP + ++ +E + + LA+SLHA + +
Sbjct: 155 LDNYDNLLRFIELLTDENGINISQRNLTVSTCGLVPRMRQLADEKLSITLALSLHASNQE 214

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R  L+P+   Y +  ++DAC++Y   +  RR+TFEY ++ G+ND+  DA  L  ++ G+
Sbjct: 215 KRKALMPVANSYDIHDVVDACKYYFAQT-GRRVTFEYSLVGGVNDTAEDAAELSALVHGM 273

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
              INLIP NP    +Y+ S++  I  F   ++++G +  IR   G DI  ACGQL+   
Sbjct: 274 NCHINLIPVNPIKERDYVQSNKGVIEAFKNRLEKNGINVTIRREMGRDIDGACGQLR--K 331

Query: 370 KRIPK 374
           K I K
Sbjct: 332 KHIDK 336


>gi|325105966|ref|YP_004275620.1| 23S rRNA m(2)A-2503 methyltransferase [Pedobacter saltans DSM
           12145]
 gi|324974814|gb|ADY53798.1| 23S rRNA m(2)A-2503 methyltransferase [Pedobacter saltans DSM
           12145]
          Length = 351

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/334 (36%), Positives = 186/334 (55%), Gaps = 20/334 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++WI+ +    F  M++IS+++R  L + F I   +I   + S D T K     
Sbjct: 30  FRANQIYEWIWKKSATTFDEMTNISKDLRDKLKEIFVINAVKINSSQFSSDKTIK----- 84

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
            +  +     IE V IP   R T CVSSQVGCSLTC FC TG     RNL  +EI  QV+
Sbjct: 85  NSFILHDTHLIEGVLIPTPERMTACVSSQVGCSLTCKFCATGYMDRKRNLNPDEIYDQVV 144

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           L             I+     + G  ++NIV MGMGEPL N+ NV KS+   +   GL+ 
Sbjct: 145 L-------------IDKQAKENYGIPLTNIVYMGMGEPLLNYANVLKSIERITSEDGLNM 191

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           + +RIT+ST+G    I ++G++ +   LA+SLHA ++  RN ++PIN +  L+ L +A +
Sbjct: 192 ASKRITVSTAGIAKMIKKLGDDNVKFNLALSLHAANDQKRNEIMPINEQNSLQALAEALK 251

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           ++   +    +T+EY++    ND   DA  L K  K IP K+N+I +NP    ++  + +
Sbjct: 252 YFYAKT-KNPVTYEYIVFNDFNDGIEDARELAKFCKHIPCKVNIIEYNPISFADFANAQE 310

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             I  F+E +++ G ++ IR  RG DI AACGQL
Sbjct: 311 DKIEAFAEHLRKQGVTTNIRRSRGKDIDAACGQL 344


>gi|238926270|ref|ZP_04658030.1| Fe-S-cluster redox enzyme [Selenomonas flueggei ATCC 43531]
 gi|238885950|gb|EEQ49588.1| Fe-S-cluster redox enzyme [Selenomonas flueggei ATCC 43531]
          Length = 346

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 199/364 (54%), Gaps = 30/364 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++ G  + EL +AL   GIP    R R  Q+ +W+Y RG   F  M ++ + +R  L   
Sbjct: 2   NIFGWTKTELADALRAEGIP----RFRADQVIRWMYQRGAVSFDIMDNLPKTLRVRLAAL 57

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           FSI  P+I     S DG T K L  F           ETV +      ++CVS+Q GC +
Sbjct: 58  FSIERPQIAARLTSTDGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCVSTQAGCRM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    LVRNLT  EI  QV+          G  D     +   G  +  IV+MG
Sbjct: 113 GCAFCASTLHGLVRNLTVGEIAAQVI----------GMAD----YLRQEGAHVDTIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
            GEPL N+DNV  +L +  A D++GLS+  R ITLSTSG VP I R+ EE + + L+ISL
Sbjct: 159 SGEPLENYDNVIGALRLLHADDTIGLSY--RGITLSTSGIVPGILRLSEEGMPISLSISL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + +LR+ L+P+NR YP+  ++ A + Y   +  RR+T+EY++++ +ND  R+A  L 
Sbjct: 217 HAPTEELRSSLMPVNRMYPMADVLRAAQTYAARTK-RRVTYEYILIRDVNDGIREAEQLA 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L+G  A +NLIP NP      L   +  +  F   ++    ++ +R   G DI AACG
Sbjct: 276 ELLRGQLASVNLIPINPVVERNLLRPSKGTVRRFQRVLEERHITATVRREMGTDIQAACG 335

Query: 364 QLKS 367
           QL+S
Sbjct: 336 QLRS 339


>gi|295696043|ref|YP_003589281.1| radical SAM enzyme, Cfr family [Bacillus tusciae DSM 2912]
 gi|295411645|gb|ADG06137.1| radical SAM enzyme, Cfr family [Bacillus tusciae DSM 2912]
          Length = 360

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 26/361 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L G+   EL   L + G P      R +Q++ W+Y + +     M+++ + +R++L +  
Sbjct: 17  LYGLTLAELRTWLEEQGEPG----YRAAQLFDWMYKKRVTSVDAMTNLPKALRNVLRERA 72

Query: 69  SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            +   E +  ++S  DGT K+L R       G   +ETV +      ++CVSSQVGC + 
Sbjct: 73  RLGTMEELTRQVSKKDGTTKFLFRL----FDGAT-VETVLMRHSYGHSVCVSSQVGCHMG 127

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +    LVRNL A E++ QVL  + +L                 G+++S++V+MG 
Sbjct: 128 CQFCASTLGGLVRNLEAGEMVEQVLACQRML--------------DQQGQRVSSVVVMGS 173

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N+    + + + +   GL   +R IT+STSG VP I ++ EE + + LA+SLHA 
Sbjct: 174 GEPLENYGATLRFIRLITADEGLRIGQRHITVSTSGMVPAIRKLAEERLQITLAVSLHAS 233

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++++R+ L+PINR YP+ +L++ACR Y      RR+TFEY ++ GIND    A  L   L
Sbjct: 234 NDEVRSRLMPINRAYPIAVLLEACREYWE-KTGRRLTFEYALIGGINDRLDQADELADRL 292

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +G+P  +NLIP N  P   +  + ++ +  F E ++R G S  +R   G DI AACGQL+
Sbjct: 293 RGLPCHVNLIPVNYVPERRFDRTPRRQVEAFRERLERHGISCTVRREMGADIAAACGQLR 352

Query: 367 S 367
           +
Sbjct: 353 A 353


>gi|89890089|ref|ZP_01201600.1| radical SAM domain protein [Flavobacteria bacterium BBFL7]
 gi|89518362|gb|EAS21018.1| radical SAM domain protein [Flavobacteria bacterium BBFL7]
          Length = 346

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/355 (35%), Positives = 196/355 (55%), Gaps = 22/355 (6%)

Query: 13  MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72
           +R   ++ L +  + Q     R +Q+++W++ +G   F  M+++S++ R  L +HF I +
Sbjct: 8   IRSYTQDQLREYFVDQGQQAFRGNQVYEWLWKKGAHHFDDMTNLSKDTRAFLQEHFVINH 67

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
             +   + S DGT K  ++     +   + +E+V IP  +R T CVSSQVGCSL C FC 
Sbjct: 68  IRVDHMQRSKDGTIKNAVK-----LHDGLTVESVMIPTPTRTTACVSSQVGCSLNCEFCA 122

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           T   K +RNL  +EI  QV+              I+        R +SNIV MGMGEPL 
Sbjct: 123 TARLKRMRNLNPDEIYDQVVA-------------IDQQSKNYHNRPLSNIVFMGMGEPLM 169

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHAVSNDL 250
           N+ NV KS+   +   GL  S +RITLSTSG VP + +    +     LA+SLH+  ++ 
Sbjct: 170 NYKNVIKSIDKITGDDGLGMSPKRITLSTSG-VPKMMKKLADDRPRFNLALSLHSAIDEK 228

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R  ++P N ++PLE + +A R++   +  R +T+EYV+ KGIND+  D   LI+  K IP
Sbjct: 229 RVKIMPFNEQFPLEDIKEALRYWYDKTGTR-VTYEYVVWKGINDTKEDIDALIEFCKVIP 287

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            K+N+I +N      +  + ++ +  +   + R G++  +R  RG DI AACGQL
Sbjct: 288 CKVNIIEYNSIDDARFEQASKQAVDAYERELNRYGFTVNVRRSRGKDIDAACGQL 342


>gi|225181331|ref|ZP_03734775.1| radical SAM enzyme, Cfr family [Dethiobacter alkaliphilus AHT 1]
 gi|225167912|gb|EEG76719.1| radical SAM enzyme, Cfr family [Dethiobacter alkaliphilus AHT 1]
          Length = 347

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 195/367 (53%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+ +   EL+E    +G P      R  Q+  W+Y +G + F  M+++ + +R  
Sbjct: 1   MDKVNLLELSTSELQEFFQSLGQPA----FRAKQVMDWLYQQGAQTFNEMTNLPKGLREQ 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q     +  +V E++S DGT K+L   P         +ETV +P     + C+S+QVG
Sbjct: 57  LAQKAVPGFLSVVTEQVSEDGTEKYLFALP-----DGQTVETVVLPYDIGFSACISTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +G    VRNLTA EI+ QVL  ++ L                 G+++ ++V
Sbjct: 112 CKMGCLFCASGLPGFVRNLTAAEIMAQVLQVKNAL--------------RKRGKELKSLV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGVMLA 240
           +MG GEPL NF      L    D   L+ S R +TLSTSG VP I   A++G  +   LA
Sbjct: 158 LMGSGEPLDNFRETIAFLEAVRDPQKLAMSLRHVTLSTSGLVPKIEELAKLGWPLN--LA 215

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +N +R+ ++P+N+ YPLE L+ AC  Y   +  RR+T+EY+++  +ND    A 
Sbjct: 216 VSLHASNNRVRDKIMPVNKTYPLEPLLSACDTY-SRATGRRVTYEYILIDRLNDKTEHAK 274

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L  +LKG    +NLIP N         S Q  +  F + +++ G +  +R   G DI A
Sbjct: 275 ELASLLKGRLCHVNLIPLNAVDELGLKPSPQNTVKQFRDTLRQKGVNVTVRRKLGADIAA 334

Query: 361 ACGQLKS 367
           ACGQL++
Sbjct: 335 ACGQLRN 341


>gi|194014876|ref|ZP_03053493.1| radical SAM enzyme, Cfr family [Bacillus pumilus ATCC 7061]
 gi|194013902|gb|EDW23467.1| radical SAM enzyme, Cfr family [Bacillus pumilus ATCC 7061]
          Length = 360

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 192/340 (56%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y + +  F  MS++S+++R  L   F+I   + V ++ S DGT K+L   
Sbjct: 37  FRAAQIFEWLYEKRVTSFDEMSNLSKDLREKLKDQFTITTLKTVIKQTSQDGTIKFLFE- 95

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +  +   ++CV++QVGC + C+FC +    L RNL A EI+ QVL
Sbjct: 96  ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVL 151

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S++V+MG+GEP  NF+ +   L I +   GL+ 
Sbjct: 152 KVQQALDE--------------TDERVSSVVIMGIGEPFDNFEEMLAFLKIINHDHGLNI 197

Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I +   E++ +  A+SLHA + ++R+ L+PIN+ Y L  L++A  
Sbjct: 198 GARHITVSTSGIIPKIYQFADEQMQINFAVSLHAPNTEIRSRLMPINKAYKLPKLMEAIE 257

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RR++FEY +  G+ND    A  L  +LKGI   +NLIP N  P  +Y+ + +
Sbjct: 258 YYIQ-KTGRRVSFEYGLFGGVNDQVHHAEELADLLKGIKCHVNLIPVNYVPERDYVRTPR 316

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           + I  F + +K  G +  IR  +G DI AACGQL++  ++
Sbjct: 317 EQIFLFEKTLKERGVNVTIRREQGHDIDAACGQLRAKERQ 356


>gi|195977717|ref|YP_002122961.1| 23S rRNA methyltransferase and florfenicol/chloramphenicol
           resistance protein [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|254807213|sp|B4U1T1|RLMN_STREM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|195974422|gb|ACG61948.1| 23S rRNA methyltransferase and florfenicol/chloramphenicol
           resistance protein [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 360

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 204/368 (55%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL    +   I       R +QIW W+Y + I+ F  M++IS+E   +L 
Sbjct: 2   KPSIYGLTRDEL----IAWAIDNGQKAFRATQIWDWLYRKRIQSFDEMTNISKEFLAILK 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F I  +   +  E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DSFCINPLKQRVAQE--SADGTVKYLFELPDGML-----IETVLMRQHYGQSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L + EI  Q+++ ++   D  G ++           ++S++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMMVQNYF-DQRGQDE-----------RVSHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +PL+ L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNELRSSIMRINRSFPLDKLFSAIEYYIETTN-RRVTFEYIMLNKVNDGVEQAQEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|325860042|ref|ZP_08173169.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola CRIS
           18C-A]
 gi|325482568|gb|EGC85574.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola CRIS
           18C-A]
          Length = 353

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 195/366 (53%), Gaps = 29/366 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+GM   EL+E    +G+P         Q+ KW+Y + ++    M++IS+  R  L 
Sbjct: 5   KKYLLGMTLGELKEVAKSLGMPA----FTGGQMAKWLYTQQVKSIDEMTNISKANREKLA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             ++I   E  D + S DGT K+L  FP     G   +ETVYIPE  R TLCVSSQVGC 
Sbjct: 61  AAYAIGCKEPTDAQYSKDGTVKYL--FPTDS--GKF-VETVYIPEDGRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +L+A +IL QV                    +P    K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLSATDILNQVY------------------SLPERD-KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DNV +   I +   G  +S +RIT+S+ G    + R  EE    +AIS+H+
Sbjct: 157 GQGEPMDNLDNVLRVTEILTAGFGYGWSPKRITVSSVGIKGKLKRFLEESDCHVAISMHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R+ L+P  R   +E ++D   +Y   S+ RR++FEY++ K +NDS   A  ++++
Sbjct: 217 PLHEQRSELMPAERGMSIESIVDLLGNYD-FSHQRRLSFEYIVFKDVNDSEAHAKAIVRL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+  +INLI F+P P       D + +  F   +   G  + IR  RG DI AACG L
Sbjct: 276 LKGLDCRINLIRFHPIPNTPLQGVDDQKMEEFRNYLTLHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSKR 371
            +  ++
Sbjct: 336 STAKEK 341


>gi|257066169|ref|YP_003152425.1| radical SAM enzyme, Cfr family [Anaerococcus prevotii DSM 20548]
 gi|256798049|gb|ACV28704.1| radical SAM enzyme, Cfr family [Anaerococcus prevotii DSM 20548]
          Length = 341

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/355 (35%), Positives = 194/355 (54%), Gaps = 30/355 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +ELEE   K G    + + R  Q+++ I+V  + DF+ MSD+S+++R  L++ +     +
Sbjct: 11  KELEEIFTKEG----YQKFRAKQVYRQIHVNKVNDFKLMSDLSKDMREKLSEKYDFPKMK 66

Query: 75  IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           +  E +S  D T+K+L       I     IE V++    R T+C+SSQVGC + C FC +
Sbjct: 67  VEKEFVSELDSTKKYLFSLADGNI-----IEAVFMDYDKRKTICISSQVGCRMGCKFCAS 121

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
                 RNL+A E++ +V     L GD                  I+NIV+MG+GEPL N
Sbjct: 122 TKNGRERNLSAGELIEEVYALERLNGD------------------INNIVIMGIGEPLDN 163

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
           ++N++K + I +D  G + S R ITLSTSG  P I ++ +  + V LA+SLH   +D R 
Sbjct: 164 YENIRKFIEIITDEKGRNLSHRSITLSTSGLSPMIRKLADSGLDVNLAVSLHYADDDKRR 223

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
             +PI  KY +E L++A  +Y   +  RR++FEYV++ G+N+   D  NL  +LKG    
Sbjct: 224 KFMPIANKYSIESLMEATDYYLDRT-KRRVSFEYVVIDGVNNLDSDVSNLTSLLKGKNVH 282

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           INLIP NP     Y       +  F + + +   ++ IR   G DI A+CGQL++
Sbjct: 283 INLIPLNPIEEFSYDRPKSTALRDFRDKLLKKKLNATIRKSMGSDIDASCGQLRN 337


>gi|189463574|ref|ZP_03012359.1| hypothetical protein BACCOP_04298 [Bacteroides coprocola DSM 17136]
 gi|189429677|gb|EDU98661.1| hypothetical protein BACCOP_04298 [Bacteroides coprocola DSM 17136]
          Length = 349

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 192/366 (52%), Gaps = 29/366 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    E++  +  +G+P         QI  W+Y + +     M+++S + R  L +++
Sbjct: 8   LLGKTLSEIQGIVHGLGMPG----FTAKQIVAWLYDKKVFSIDDMTNLSLKNRERLKENY 63

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I     + E  S DGT K+L      C      IE+VYIP++ R TLCVSSQVGC + C
Sbjct: 64  EIGVTAPIHEMRSVDGTVKYLF-----CTPEGDYIESVYIPDEDRATLCVSSQVGCKMNC 118

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG Q    +LT  +IL Q+                    IP    K++NIV MGMG
Sbjct: 119 KFCMTGKQGYTNSLTPTQILNQIY------------------SIPERD-KLTNIVFMGMG 159

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EP  N D V +SL I +   G ++S +RIT+ST G    + R  EE    LA+SLH+   
Sbjct: 160 EPFDNLDAVLRSLEILTADYGYAWSPKRITVSTVGLRKGLERFLEESDCHLAVSLHSPFP 219

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
             R  L+P  + + +  +ID  R Y   S  RR++FEY++ KG+NDS   A  LIK+L+G
Sbjct: 220 AQRRELMPAEKAFSITEIIDILRRY-DFSKQRRLSFEYIVFKGVNDSMLYAKELIKLLRG 278

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +  +INLI F+  P  +   +D + ++ F + + + G  + IR  RG DI AACG L + 
Sbjct: 279 LDCRINLIRFHAIPNVDLEGTDMESMLAFRDYLTQHGVFATIRASRGEDIFAACGMLSTA 338

Query: 369 SKRIPK 374
            ++  K
Sbjct: 339 KRQAEK 344


>gi|295094726|emb|CBK83817.1| 23S rRNA m(2)A-2503 methyltransferase [Coprococcus sp. ART55/1]
          Length = 358

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 204/365 (55%), Gaps = 30/365 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +++  L  M  EEL   +   G P      R  QI++W +V+     + M+++ + +R  
Sbjct: 11  IRQPDLKSMNMEELRNWVTGAGQPA----FRAKQIYQWFHVKLADGTEEMTNLPKSLREK 66

Query: 64  LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +++ + I    +V   IS  DGT K+L R       G V IE+V +  K   ++C+SSQV
Sbjct: 67  MDE-YGIYGVSVVTRLISEDDGTNKFLFRLH----DGNV-IESVLMKYKHGNSVCISSQV 120

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    LVRNLTA E+L Q+   + + G+                 ++SN+
Sbjct: 121 GCRMGCRFCASTIGGLVRNLTASEMLSQIYSIQKITGE-----------------RVSNV 163

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V+MG GEPL NFDN+ + + + +D  GL+ S+R +T+S+ G VP I R+ +  + +  A+
Sbjct: 164 VVMGTGEPLDNFDNLVRFIEMLTDENGLNISQRNVTVSSCGLVPEIKRLADMGLSITFAL 223

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +++ R  L+PI  +Y +  ++DAC +Y   +  RRITFEY ++KG NDSP  A  
Sbjct: 224 SLHAPNDEDRRALMPIANRYSIAEVLDACDYYFDRT-GRRITFEYSLVKGQNDSPEKACE 282

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++++G    +NLIP NP    +Y  +D   I  F   ++R+  ++ +R   G DI AA
Sbjct: 283 LARLIRGRNCHVNLIPVNPIKERDYERADNSAIENFKNILERNQITATVRRSMGRDIDAA 342

Query: 362 CGQLK 366
           CGQL+
Sbjct: 343 CGQLR 347


>gi|321315341|ref|YP_004207628.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
           BSn5]
 gi|320021615|gb|ADV96601.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
           BSn5]
          Length = 363

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 192/340 (56%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y + +  F+ M+++S+++R  LN HF +   +   ++ S DGT K+L   
Sbjct: 40  FRAAQIFEWLYEKRVSSFEDMTNLSKDLREKLNTHFVLTTLKTAVKQTSQDGTMKFLFE- 98

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +  +   ++CV++QVGC + C+FC +    L RNL A EI+ QV+
Sbjct: 99  ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 154

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S++V+MG+GEP  NF+ +   L I +   GL+ 
Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200

Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I     +++ +  AISLHA + ++R+ L+PINR Y L  L++A +
Sbjct: 201 GARHITVSTSGIIPKIYEFADQQMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMEAVK 260

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RRI+FEY +  G+ND    A  L  +L+G+   +NLIP N  P  +Y+ + +
Sbjct: 261 YYIN-KTGRRISFEYGLFGGVNDQVEHAEELADLLEGVKCHVNLIPVNYVPERDYVRTPR 319

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             I  F + +K  G +  IR  +G DI AACGQL++  ++
Sbjct: 320 DQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLRAKERQ 359


>gi|294101228|ref|YP_003553086.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM
           12261]
 gi|293616208|gb|ADE56362.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM
           12261]
          Length = 347

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/360 (37%), Positives = 194/360 (53%), Gaps = 33/360 (9%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           E LE    K+G+     R RT QI +WIY + + +   M+++ +++R  L     I+ P 
Sbjct: 14  EWLEFCTEKLGLQ----RYRTDQICQWIYEKKVFNIYDMTNLGKDLREDLAYKILILPPS 69

Query: 75  IVDEKISCDGTRK--WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
           +V ++ S DGTRK  W L+   R       IE+V +   +  T C+SSQVGC L C+FC 
Sbjct: 70  LVKQETSKDGTRKFLWQLQDGQR-------IESVLLSHGNHNTACISSQVGCPLACAFCA 122

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           TG    VRNLT  EI          +G F   E        + G+ I+NIV MGMGEPL 
Sbjct: 123 TGKGGFVRNLTPGEI----------VGQFLAME-------KAAGQNITNIVFMGMGEPLL 165

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251
           N + + KS+ I +         R +T+ST+G VP I  + E EI V L++SLH  ++ LR
Sbjct: 166 NQEALFKSIKILNHPKMRGLGARHMTISTAGIVPGIRALTELEIPVRLSVSLHGTNDMLR 225

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
           N L+PIN++YPL  LI+A R Y       R+T EYVM+  +ND+   A  L  ++ G+  
Sbjct: 226 NKLMPINQQYPLGSLIEALRDYQQ-KTGDRVTIEYVMIDRVNDNTEQAYELAALMNGLSI 284

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
            +NLIP+NP     Y  S Q+ I  F + +        IR  +G DI AACGQL+  +++
Sbjct: 285 YVNLIPYNPVDAT-YRRSSQERIKAFGKILSELNIEYEIRREKGSDINAACGQLRRQNEK 343


>gi|172037640|ref|YP_001804141.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp.
           ATCC 51142]
 gi|205829743|sp|B1WU13|RLMN_CYAA5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|171699094|gb|ACB52075.1| CHP48-containing protein [Cyanothece sp. ATCC 51142]
          Length = 343

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 198/366 (54%), Gaps = 31/366 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++E+L+G    +L + + + G P      R  Q+ +W+Y +G+R    +S   +  R  L
Sbjct: 4   QEETLLGKSVGQLTDWVKQQGQPA----YRGKQLHQWLYQKGVRSLTEISVFPKAWREEL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + + I    IV   I+ D TRK+LL      +G  + IETV IP   R T+CVSSQVGC
Sbjct: 60  -KDYPIGRSNIVHCTIAPDQTRKYLL-----SLGDGLIIETVGIPTSKRLTVCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG     RNLT  EI+ QVL  +         ED +        R++S++V 
Sbjct: 114 PMNCDFCATGKGGYTRNLTCAEIVDQVLTVQ---------EDFQ--------RRVSHVVF 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MGMGEPL N   V K++ I +  +G+   +R +T+ST G    I  +   ++ V  A+SL
Sbjct: 157 MGMGEPLLNLKEVIKAVKILNQDVGIG--QRSLTISTVGVPKKILELAHHQLQVTFAVSL 214

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +  LR  L+P  + YPL  L+  CR Y  ++  RR+TFEY++L G+ND P   + L 
Sbjct: 215 HAANQTLREQLIPSAKSYPLPKLLADCRKYVEIT-GRRVTFEYILLGGVNDLPEQGIQLA 273

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K L G  + +NLIP+NP    +Y   D + I  F   ++    +  +R  RGL+  AACG
Sbjct: 274 KCLTGFQSHVNLIPYNPIEEADYQRPDGESINRFKSILEEHKIAVSVRYSRGLEANAACG 333

Query: 364 QLKSLS 369
           QL+++S
Sbjct: 334 QLRAMS 339


>gi|163815234|ref|ZP_02206611.1| hypothetical protein COPEUT_01394 [Coprococcus eutactus ATCC 27759]
 gi|158449429|gb|EDP26424.1| hypothetical protein COPEUT_01394 [Coprococcus eutactus ATCC 27759]
          Length = 374

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 203/362 (56%), Gaps = 32/362 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L  M  +EL++ +  +G P      R  QI++W +V+     + M+++ + +R L+++ 
Sbjct: 30  DLKSMSIDELKDWVQGVGQPA----FRAKQIYQWFHVKLAGSIEEMTNLPKSLRELMDEQ 85

Query: 68  FSIIYPEIVDEKISC--DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              IY   V  ++    DGT K+L R       G V IE+V +  K   ++C+SSQVGC 
Sbjct: 86  --KIYGVNVVTRLESKEDGTNKFLFRLH----DGNV-IESVLMRYKHGNSVCISSQVGCR 138

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    LVRNLTA E+L Q+   + + G+                 +ISN+V+M
Sbjct: 139 MGCRFCASTIGGLVRNLTASEMLSQIYEIQKISGE-----------------RISNVVVM 181

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           G GEPL NFDN+ + + + +D  GL+ S+R IT+S+ G VP I R+ + ++ +  A+SLH
Sbjct: 182 GTGEPLDNFDNLVRFIKMLTDENGLNISQRNITVSSCGLVPEIKRLADLDLTITFALSLH 241

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++  R  L+PI  +Y +E ++DACR+Y   +  RRITFEY ++KG NDSP  A  L  
Sbjct: 242 APNDADRRELMPIANRYSIEEVLDACRYYFDKT-GRRITFEYSLVKGQNDSPEKARELAA 300

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KG+   +NLIP NP     +  +D   I  F + ++    +  +R   G DI AACGQ
Sbjct: 301 LIKGMNCHVNLIPVNPIKERSFERADNTSIENFRKVLESRQITVTVRRSMGRDIDAACGQ 360

Query: 365 LK 366
           L+
Sbjct: 361 LR 362


>gi|94984740|ref|YP_604104.1| hypothetical protein Dgeo_0633 [Deinococcus geothermalis DSM 11300]
 gi|123079957|sp|Q1J0P9|RLMN_DEIGD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|94555021|gb|ABF44935.1| 23S rRNA m(2)A-2503 methyltransferase [Deinococcus geothermalis DSM
           11300]
          Length = 344

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 176/335 (52%), Gaps = 22/335 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++V+G+  F+ M+++  + R  L   F +     ++   S DG+ K+L   
Sbjct: 17  FRQRQLLEWVFVQGVGTFEAMTNLPAQARADLASRFRLNPFREIETVRSADGSVKYLF-- 74

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +    ++E VY+P   R T+CVS+ VGC   C+FC TG     RNLT  EI+ QVL
Sbjct: 75  ---TLQDGRQMEAVYMPYLDRKTICVSTMVGCPAKCAFCATGAMGFGRNLTPGEIVGQVL 131

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                 G  P              R++ N+V MGMGEPL N++N  ++  I      L  
Sbjct: 132 AVAGGEGLAP--------------RELRNLVFMGMGEPLLNYENTMQAARILLHPQALGM 177

Query: 213 SKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
           SKRR+TLST G    I R+  E  +G+ LAISLHA     R  ++P   +  +  ++ A 
Sbjct: 178 SKRRVTLSTVGLPKGIRRLAAEDDLGIKLAISLHAPDEATRQRIIPTGHRNSIAEIMAAA 237

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R Y  ++  RR+TFEY ML+GIND    A  L  +L+G+ + +NLIP NPW G  +  S 
Sbjct: 238 REYQAVTG-RRVTFEYSMLRGINDHLWQAEELADLLRGLVSHVNLIPMNPWDGSGFESST 296

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++ I  F + +   G    +R  RG D  AACGQL
Sbjct: 297 EEQIQAFYDVLAARGVDVSVRRSRGKDAGAACGQL 331


>gi|225868978|ref|YP_002744926.1| radical SAM superfamily protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|259491996|sp|C0MD67|RLMN_STRS7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|225702254|emb|CAX00012.1| radical SAM superfamily protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 360

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 204/368 (55%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL    +   I       R +QIW W+Y + ++ F  M++IS+E   +L 
Sbjct: 2   KPSIYGLTRDEL----IAWAIDNGQKAFRATQIWDWLYRKRVQSFDEMTNISKEFLAILK 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F I  +   +  E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DSFCINPLKQRVAQE--SADGTVKYLFELPDGML-----IETVLMRQHYGQSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L + EI  Q+++ ++   D  G ++           ++S++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMMVQNYF-DQRGQDE-----------RVSHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +PL+ L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNELRSSIMRINRSFPLDKLFSAIEYYIETTN-RRVTFEYIMLNKVNDGVEQAQEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|296331150|ref|ZP_06873624.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305674306|ref|YP_003865978.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151794|gb|EFG92669.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412550|gb|ADM37669.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 363

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 192/340 (56%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y + +  F+ M+++S+++R  L+ HF +   +   ++ S DGT K+L   
Sbjct: 40  FRAAQIFEWLYEKRVSSFEEMTNLSKDLREKLSAHFEMTTLKTAVKQTSQDGTMKFLFE- 98

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +  +   ++CV++QVGC + C+FC +    L RNL A EI+ QVL
Sbjct: 99  ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVL 154

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S++V+MG+GEP  NF+ +   L I +   GL+ 
Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200

Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I     +++ +  AISLHA + ++R+ L+PINR Y L  L++A +
Sbjct: 201 GARHITVSTSGIIPKIYEFADQQMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMEAVK 260

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RRI+FEY +  G+ND    A  L  +L+GI   +NLIP N  P  +Y+ + +
Sbjct: 261 YYIN-KTGRRISFEYGLFGGVNDQVEHAEELADLLEGIKCHVNLIPVNYVPERDYVRTPR 319

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             I  F + +K  G +  IR  +G DI AACGQL++  ++
Sbjct: 320 DQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLRAKERQ 359


>gi|15646037|ref|NP_208219.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori 26695]
 gi|3287947|sp|O25970|RLMN_HELPY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|2314600|gb|AAD08467.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 357

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 199/354 (56%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L + F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E+ + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPL--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     ++   F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|288927891|ref|ZP_06421738.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330725|gb|EFC69309.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 351

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 195/362 (53%), Gaps = 29/362 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   +EL+   +  G+P         Q+  W+Y + +   + M++IS+  R  L Q +
Sbjct: 8   LLGHTLDELKAIAIDNGLPA----FAGKQMAVWLYDKHVDTIEEMTNISKSNREKLAQRY 63

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I   + +D + S DGT K+L  FP     G   +ETVYIP++ R TLCVS QVGC + C
Sbjct: 64  EIGAAKFIDAQYSKDGTIKYL--FPTE--SGKF-VETVYIPDRDRATLCVSCQVGCKMNC 118

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG Q    NLTA++IL Q+                    +P   +K++NIV MG G
Sbjct: 119 LFCQTGKQGFEGNLTAKDILNQIY------------------ALPER-QKLTNIVFMGQG 159

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EP+ N DNV K   I +   G ++S +RIT+S+ G    + R  +E    +AIS+H    
Sbjct: 160 EPMDNLDNVLKVTQILTADYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHTPIP 219

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           + R  ++P  +   +E +++  + Y   ++ RR++FEY+M  G+ND+P  A  L+K+++G
Sbjct: 220 EQRASIMPAEKGLSIEEIVELLKQYD-FTHQRRLSFEYIMFGGLNDTPLHARQLVKLVEG 278

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +  ++NLI F+  P      SD+K + TF + +   G  + IR  RG DI AACG L + 
Sbjct: 279 LDCRVNLIRFHQIPNVNLNNSDEKRMETFRDYLTNHGVFTTIRASRGQDIFAACGLLSTA 338

Query: 369 SK 370
            K
Sbjct: 339 KK 340


>gi|291484127|dbj|BAI85202.1| hypothetical protein BSNT_02588 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 363

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 192/340 (56%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y + +  F+ M+++S+++R  LN HF +   +   ++ S DGT K+L   
Sbjct: 40  FRAAQIFEWLYEKRVSSFEEMTNLSKDLREKLNTHFVLTTLKTAVKQTSQDGTMKFLFE- 98

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +  +   ++CV++QVGC + C+FC +    L RNL A EI+ QV+
Sbjct: 99  ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 154

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S++V+MG+GEP  NF+ +   L I +   GL+ 
Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200

Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I     +++ +  AISLHA + ++R+ L+PINR Y L  L++A +
Sbjct: 201 GARHITVSTSGIIPKIYEFADQQMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMEAVK 260

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RRI+FEY +  G+ND    A  L  +L+G+   +NLIP N  P  +Y+ + +
Sbjct: 261 YYIN-KTGRRISFEYGLFGGVNDQVEHAEELADLLEGVKCHVNLIPVNYVPERDYVRTPR 319

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             I  F + +K  G +  IR  +G DI AACGQL++  ++
Sbjct: 320 DQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLRAKERQ 359


>gi|225870018|ref|YP_002745965.1| radical SAM superfamily protein [Streptococcus equi subsp. equi
           4047]
 gi|254807212|sp|C0MBZ4|RLMN_STRE4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|225699422|emb|CAW92902.1| radical SAM superfamily protein [Streptococcus equi subsp. equi
           4047]
          Length = 360

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 201/368 (54%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL    +   I       R +QIW W+Y + ++ F  M++IS+E   +L 
Sbjct: 2   KPSIYGLTRDEL----IAWAIDNGQKAFRATQIWDWLYRKRVQSFDEMTNISKEFVAILK 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F I  +   +  E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DSFCINPLKQRVAQE--SADGTVKYLFELPDGML-----IETVLMRQHYGQSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L + EI  Q+++ ++        E            ++S++V
Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMMVQNYFDKRAQDE------------RVSHVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG    I     E + V LA+S
Sbjct: 159 VMGIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +PL+ L  A  +Y   +N RR+TFEY+ML  +ND    A  L
Sbjct: 219 LHAPNNELRSSIMRINRSFPLDKLFSAIEYYIETTN-RRVTFEYIMLNKVNDGVEQAQEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + K I   + +NLIP+NP     +Y  S ++ +  F + +K++G +  +R   G DI 
Sbjct: 278 ADLTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|134299564|ref|YP_001113060.1| radical SAM protein [Desulfotomaculum reducens MI-1]
 gi|205829746|sp|A4J582|RLMN_DESRM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|134052264|gb|ABO50235.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfotomaculum reducens
           MI-1]
          Length = 350

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 187/336 (55%), Gaps = 25/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLR 91
            R  QI +W++ +G+  F  M+++S+ +R  LN+  ++    I+  ++S  G T K+L  
Sbjct: 31  FRADQICRWVFAQGVSSFDEMTNLSKGLRAKLNELTTLSQATILTSQVSAKGDTIKFLFG 90

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
            P         +E+V +      ++CVS+QVGC + C FC +    LVRNL+  EI  QV
Sbjct: 91  LP-----DGHAVESVLMKHTYGNSVCVSTQVGCRMGCLFCASTINGLVRNLSPGEIYDQV 145

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L                  +    G ++S+IV+MG GEPL NFDNV K L       GL+
Sbjct: 146 L-----------------GIQRETGERVSHIVIMGAGEPLDNFDNVLKFLENIHAEYGLN 188

Query: 212 FSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
              R ITLST G VP +  +   ++ + LA+SLHA ++DLR+ LVPINR+Y +  LI+AC
Sbjct: 189 IGYRHITLSTCGLVPRMQELALRKLPITLAVSLHAPNDDLRDKLVPINRRYKIHQLIEAC 248

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
            +Y  ++  RRITFEY +L GINDS      L  +LK +   INLIP NP    E++ + 
Sbjct: 249 SNYIEIT-GRRITFEYALLSGINDSDEHVRQLAALLKNLLCHINLIPVNPVEEKEFIRTP 307

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            + +  F + +++ G +  +R   G DI AACGQL+
Sbjct: 308 PEKVERFRQYLEKVGLNVTVRRELGGDIDAACGQLR 343


>gi|168486739|ref|ZP_02711247.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC1087-00]
 gi|168490855|ref|ZP_02714998.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC0288-04]
 gi|183570290|gb|EDT90818.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC1087-00]
 gi|183574611|gb|EDT95139.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC0288-04]
          Length = 361

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 209/368 (56%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QV 
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVD 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    +    E            ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAERGQDE------------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV   +   +D  G++   R IT+STS     I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFVCTINDDKGMAIGARHITVSTSVLAHKIRNFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL  
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEF 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEYGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|330894491|gb|EGH27152.1| radical SAM protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 249

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/225 (49%), Positives = 143/225 (63%), Gaps = 11/225 (4%)

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           LTA E++ QV +A    G  P           +V R I+N+VMMGMGEPL NFDNV  ++
Sbjct: 1   LTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMMGMGEPLLNFDNVIAAM 50

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261
            +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA ++ LRN LVPIN+KY
Sbjct: 51  HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 110

Query: 262 PLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           PL+ML+D+CR Y   L   R +T EY MLK IND    A+ +I++LK  P KINLIPFNP
Sbjct: 111 PLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 170

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +P   Y       I  F + + ++GY+  +RT RG DI AACGQL
Sbjct: 171 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 215


>gi|148243053|ref|YP_001228210.1| Fe-S-cluster redox protein [Synechococcus sp. RCC307]
 gi|205829914|sp|A5GVE8|RLMN_SYNR3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|147851363|emb|CAK28857.1| Predicted Fe-S-cluster redox enzyme [Synechococcus sp. RCC307]
          Length = 346

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 199/367 (54%), Gaps = 38/367 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+G+ + +LE      G+P      R  Q+  W+Y +G R +  ++ +   +R    +
Sbjct: 4   KALLGLSQAQLETWAKDQGLPP----FRGRQLHDWLYAKGARHWHDITVLPAALRQ--QE 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +     ++  ++ DGT K LL          + +ETV IP + R T+CVSSQVGC +
Sbjct: 58  PLPLGRSNELERHLAQDGTLKLLL-----ATDDGLSLETVGIPTRDRLTVCVSSQVGCPM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG + L R+L   EI+ QVL  R ++                  R+ S++V MG
Sbjct: 113 ACRFCATGKEGLQRSLEPHEIVDQVLTVREVMQ-----------------RRPSHVVFMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---VML 239
           MGEPL N D+V  ++   S  +G++   R+IT+ST G    +P +A +  E +G     L
Sbjct: 156 MGEPLLNSDHVLTAIDCLSRDLGMAM--RQITVSTVGVPNTLPRLAELALERLGRAQFTL 213

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA    LR  L+P  R YP E L++ CRHY  +S  RR++FEY++L  +NDSPR A
Sbjct: 214 AVSLHAPDQALREELIPTARAYPYEQLLEDCRHYVAISG-RRVSFEYILLGNLNDSPRQA 272

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L + ++G  + +NLIP+NP    E+   +   +  F+  +K+ G +  +R  RGLD  
Sbjct: 273 QALAEQVRGFQSHVNLIPYNPIAEEEFQRPEPARVDAFAAALKQRGVAVSVRASRGLDQN 332

Query: 360 AACGQLK 366
           AACGQL+
Sbjct: 333 AACGQLR 339


>gi|254976171|ref|ZP_05272643.1| radical SAM protein [Clostridium difficile QCD-66c26]
 gi|255093561|ref|ZP_05323039.1| radical SAM protein [Clostridium difficile CIP 107932]
 gi|255315304|ref|ZP_05356887.1| radical SAM protein [Clostridium difficile QCD-76w55]
 gi|255517972|ref|ZP_05385648.1| radical SAM protein [Clostridium difficile QCD-97b34]
 gi|255651088|ref|ZP_05397990.1| radical SAM protein [Clostridium difficile QCD-37x79]
 gi|260684153|ref|YP_003215438.1| radical SAM protein [Clostridium difficile CD196]
 gi|260687812|ref|YP_003218946.1| radical SAM protein [Clostridium difficile R20291]
 gi|260210316|emb|CBA64637.1| radical SAM protein [Clostridium difficile CD196]
 gi|260213829|emb|CBE05812.1| radical SAM protein [Clostridium difficile R20291]
          Length = 343

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 205/366 (56%), Gaps = 34/366 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK  L     +EL+E +  I         R SQI+ WIY +G + F  M++I + +R+ L
Sbjct: 4   KKIVLKNFTEDELKEFMKTID----EKPFRGSQIFSWIY-KGAKTFDDMNNIPKSLRNKL 58

Query: 65  NQHFSIIYPEI---VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            +   I   +I   ++ K+  D T+K+L       I     IETV +   SR T+CVS+Q
Sbjct: 59  EEVSCIGNIDIELKLESKV--DNTKKYLFLLDDGNI-----IETVMMDYDSRVTVCVSNQ 111

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C+FC +    L+RNL   EIL QV+                  +    G+++SN
Sbjct: 112 VGCRMGCNFCASTMDGLIRNLEPWEILDQVI-----------------KIQEDTGKRVSN 154

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240
           +V+MG GEPL NF+N K+ L I ++  GL+   R ITLST G VP +  + + EI + LA
Sbjct: 155 LVLMGSGEPLDNFENTKQFLKIINEKNGLNIGYRHITLSTCGIVPKMYELADLEIAINLA 214

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLH+  ++ R  ++P+   Y +E +++ACR+Y   +N RR+TFEY ++KG+NDS ++A 
Sbjct: 215 LSLHSPYDEERRKIMPVANAYSIEEILNACRYYIKKTN-RRVTFEYSLIKGVNDSEKEAK 273

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L K+LKG+   +NLIP N     EY   D+  I  F + ++++   + +R   G DI  
Sbjct: 274 ALAKLLKGMLCHVNLIPINKVEEREYEKPDKAFIYKFRDSLEKNNIPATVRMSMGSDISG 333

Query: 361 ACGQLK 366
           ACGQL+
Sbjct: 334 ACGQLR 339


>gi|91215990|ref|ZP_01252959.1| radical SAM enzyme, Cfr family protein [Psychroflexus torquis ATCC
           700755]
 gi|91185967|gb|EAS72341.1| radical SAM enzyme, Cfr family protein [Psychroflexus torquis ATCC
           700755]
          Length = 348

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/362 (35%), Positives = 200/362 (55%), Gaps = 26/362 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +  + ++EL E      + Q     R SQ++ W++ +   +F+ M+++S+E R +L 
Sbjct: 5   KKDIRALSKQELNEFF----VSQGDKSFRGSQVYNWLWNKATYNFEDMTNLSKETRQMLE 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F I + E+ + + S DGT K  ++     +     +E+V IP  SR T CVSSQVGCS
Sbjct: 61  DNFVINHIEVDEMQRSKDGTIKNAVK-----LHDGFTVESVLIPTLSRTTACVSSQVGCS 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T   K +RNL A+EI  QV+        + G        IP     +SNIV M
Sbjct: 116 LDCKFCATAKLKRMRNLNADEIFDQVVAIDKESRLYNG--------IP-----LSNIVFM 162

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISL 243
           GMGEPL N+ NV KS+   +   GL  S +RITLSTSG VP + +    +++   LA+SL
Sbjct: 163 GMGEPLMNYKNVLKSVEKITSPDGLGMSPKRITLSTSG-VPKMIKKLADDDVKFHLAVSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  +++R  ++P N K+PL  L D+  ++   +  + +T+EY++ KGIND+  D   L+
Sbjct: 222 HSAIDEIRTQIMPFNAKFPLADLKDSLLYWYEKT-GKSVTYEYIVWKGINDTQEDISALV 280

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K  + IP K+N+I +NP    ++       +      ++ +  +  +R  RG DI AACG
Sbjct: 281 KFCQLIPCKVNIIEYNPIDDGQFQQGSDDAVAKHVNALEANHITVTLRHSRGKDIDAACG 340

Query: 364 QL 365
           QL
Sbjct: 341 QL 342


>gi|126659786|ref|ZP_01730913.1| hypothetical protein CY0110_11217 [Cyanothece sp. CCY0110]
 gi|126618938|gb|EAZ89680.1| hypothetical protein CY0110_11217 [Cyanothece sp. CCY0110]
          Length = 342

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 200/368 (54%), Gaps = 31/368 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +++E L+G   E+L + + + G P      R  Q+ +W+Y +G R    +S   +  R  
Sbjct: 5   VQEEILLGKSVEQLTDWVKQQGQPA----YRGKQLHQWLYQKGARSLTDISVFPKTWREE 60

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L + + I    I    I+ D TRK+LL      +G  + IETV IP   R T+CVSSQVG
Sbjct: 61  L-KDYQIGRSNIYHRTIADDQTRKYLL-----SLGDELIIETVGIPTSKRLTVCVSSQVG 114

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG     R+LT  EI+ QVL  +         ED +        +++S++V
Sbjct: 115 CPMNCDFCATGKGGYTRDLTCAEIVDQVLTVQ---------EDFQ--------QRVSHVV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
            MGMGEPL N   V K++ I +  +G+   +R +T+ST G    I  +   ++ V  A+S
Sbjct: 158 FMGMGEPLLNLKEVIKAVKILNQDVGIG--QRSLTISTVGIPKKILELAHRKLQVTFAVS 215

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +  LR  L+P  + YPL  L+  CR Y  ++  RR++FEY++L G+NDS   A+ L
Sbjct: 216 LHAPNQTLREQLIPSAKYYPLPKLLADCRKYVEIT-GRRVSFEYILLGGVNDSSEQAIQL 274

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K LKG  + +NLIP+NP    +Y   D + I  F   ++    +  +R  RGL+  AAC
Sbjct: 275 AKCLKGFQSHVNLIPYNPIEEADYQRPDTQSINLFRNVLEEQKIAVSVRYSRGLEANAAC 334

Query: 363 GQLKSLSK 370
           GQL+++S+
Sbjct: 335 GQLRAMSQ 342


>gi|198275963|ref|ZP_03208494.1| hypothetical protein BACPLE_02146 [Bacteroides plebeius DSM 17135]
 gi|198271592|gb|EDY95862.1| hypothetical protein BACPLE_02146 [Bacteroides plebeius DSM 17135]
          Length = 351

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 195/373 (52%), Gaps = 29/373 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+G    EL+  +  +G+P    +    QI  W+Y + +   + M+++S + R  L 
Sbjct: 4   KTPLLGKTLNELKTIVQDLGMP----KFTAGQIASWLYDKKVGSIEEMTNLSLKNRERLM 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +++ +     V E  S DGT K+L      C      IE+VYIP+  R TLCVSSQVGC 
Sbjct: 60  ENYEVGASAPVHEVRSVDGTVKYLF-----CTPEGDYIESVYIPDDDRATLCVSSQVGCK 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LTA +IL Q+                    +P     ++N+V M
Sbjct: 115 MNCKFCMTGKQGYTTSLTAAQILNQIY------------------SVPERD-TLTNVVFM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP  N D V ++L I +   G  +S +RIT+ST G    + R  EE    LAISLH+
Sbjct: 156 GMGEPFDNLDEVLRALEILTADYGYKWSPKRITVSTVGLRKGLERFLEESDCHLAISLHS 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  +++  R Y   S  RR++FEY++ KG+NDS   A  L+K+
Sbjct: 216 PFPSQRRELMPAEKAFSITEMVEILRRY-DFSKQRRLSFEYIVFKGVNDSLIYAKELVKL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  ++NLI F+  P  +   +D + ++ F + + + G  + IR  RG DI AACG L
Sbjct: 275 LRGLDCRMNLIRFHAIPNVDLEGTDMESMIAFRDYLTQHGLFATIRASRGEDIFAACGML 334

Query: 366 KSLSKRIPKVPRQ 378
            +  ++  K  ++
Sbjct: 335 STAQQQAEKKEKE 347


>gi|325282884|ref|YP_004255425.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus
           proteolyticus MRP]
 gi|324314693|gb|ADY25808.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus
           proteolyticus MRP]
          Length = 350

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 177/335 (52%), Gaps = 22/335 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W+Y  G+  ++ M  +  E+R  L   + +   + ++   S DG+ K+L   
Sbjct: 22  FRRRQLLEWVYQHGVGSYEQMHTLPAELRAELAAGWRLNPFDDIETFRSDDGSVKYLFTL 81

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
           P        ++E VY+P   R T+CVS+ VGC   C+FC TG     RNLT  EI+ Q+L
Sbjct: 82  P-----DGRQMEAVYMPYLDRKTICVSTMVGCPARCAFCATGAMGFGRNLTPGEIVGQIL 136

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                     G E IE        R+I N+V MGMGE + N+DN  ++  I      L  
Sbjct: 137 A-------VAGGEGIEP-------REIRNLVFMGMGEAMLNYDNTMQAARILLHPQALGM 182

Query: 213 SKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
           SKRR+TLST G    I R+ EE  +G+ LAISLHA   + R  ++P      ++ ++ A 
Sbjct: 183 SKRRVTLSTVGIAKGIRRLAEEDDLGIKLAISLHAPDEETRQQIIPTGGANSIDEIMQAA 242

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R Y      RRIT EY ML+GIND    A  L + L+G+ + +NLIP NPWPG  ++ S 
Sbjct: 243 RDYQA-KTGRRITMEYTMLRGINDHLWQAELLAERLEGLVSHVNLIPMNPWPGSNFVSST 301

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++ I  F + ++  G    +R  RG D  AACGQL
Sbjct: 302 EEQIQAFYDLLEERGVDVSVRRSRGKDAGAACGQL 336


>gi|86134466|ref|ZP_01053048.1| radical SAM superfamily protein [Polaribacter sp. MED152]
 gi|85821329|gb|EAQ42476.1| radical SAM superfamily protein [Polaribacter sp. MED152]
          Length = 345

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 201/363 (55%), Gaps = 24/363 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KK+ +  + +E+L +  ++ G        R +Q+++W++ + +  F+ M++IS++ R +
Sbjct: 2   IKKKDIRALTKEQLRDFFVENGDKA----FRGNQVYEWLWSKSLHTFEDMTNISKKTREM 57

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +HF I + ++   + S DGT K  ++     +     +E+V IP   R T CVSSQVG
Sbjct: 58  LEEHFVINHIKVDSMQKSADGTIKNGIKLHDGLV-----VESVLIPTPKRTTACVSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL C FC T   K +RNL  +EI  QV++             I+         K++NIV
Sbjct: 113 CSLDCKFCATARLKRMRNLNPDEIYDQVVV-------------IDKQSRLYHNHKLTNIV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
            MGMGEPL N+ NV KS+ + +   GL  S +RIT+STSG    I ++  EE+   LA+S
Sbjct: 160 FMGMGEPLMNYKNVLKSIEMITSPEGLGMSSKRITVSTSGVPKMIKKMADEEVKFNLAVS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+  +++R  ++P N  +PL+ L ++  ++      R IT+EYV+ +GIND   D   L
Sbjct: 220 LHSAIDEVRTSIMPFNTTFPLKDLKESLEYWYE-KTKRAITYEYVVWEGINDKKEDIAAL 278

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           ++  K +P K+NLI +NP    ++  +    +  +   ++    +  +R  RG DI AAC
Sbjct: 279 VQFCKYVPCKVNLIEYNPIDDGQFQQASNAALNNYISNLEMHDITVNVRRSRGKDIDAAC 338

Query: 363 GQL 365
           GQL
Sbjct: 339 GQL 341


>gi|224418821|ref|ZP_03656827.1| hypothetical protein HcanM9_06035 [Helicobacter canadensis MIT
           98-5491]
 gi|313142339|ref|ZP_07804532.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131370|gb|EFR48987.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 292

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/305 (41%), Positives = 177/305 (58%), Gaps = 22/305 (7%)

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQV 122
           L ++F     EI  ++ S DG+ K+L +         +  E V++  K  + TLC+SSQV
Sbjct: 1   LKENFISNAVEIAKKEQSSDGSVKYLFK-----TADNLTYEAVFLKMKEDKFTLCLSSQV 55

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + CSFC T     VRNL A E++ QV   +            +   IPS   K  NI
Sbjct: 56  GCKVGCSFCLTAKGGFVRNLNAGEMVYQVFAIK------------KDQNIPS--NKAVNI 101

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N +NV K + I S+  GLS S+RR T+STSG  P I ++G  ++GV LAI
Sbjct: 102 VYMGMGEPLDNLENVTKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALDLGVQLAI 161

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV ++LR  L+PIN+ Y ++ +ID    +P + + +R+ FEY+M+ GINDS   A  
Sbjct: 162 SLHAVDDELRTKLMPINKAYNIQNIIDEVVAFP-IDSRKRVMFEYLMIDGINDSLECAKK 220

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+ +L  I AK+NLI FNP  G  Y    ++ +  F E + + G    IR  +GLDI AA
Sbjct: 221 LVALLNKIKAKVNLIYFNPHEGSLYKRPSKEKVEAFREYLLKKGLLCTIRESKGLDISAA 280

Query: 362 CGQLK 366
           CGQL+
Sbjct: 281 CGQLR 285


>gi|315651136|ref|ZP_07904168.1| cfr family radical SAM enzyme [Eubacterium saburreum DSM 3986]
 gi|315486601|gb|EFU76951.1| cfr family radical SAM enzyme [Eubacterium saburreum DSM 3986]
          Length = 352

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 201/354 (56%), Gaps = 29/354 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL+  +  IG P      R  Q+++W++   I  F   +++S+  R +L     +   +
Sbjct: 11  EELKTFVKDIGEPA----FRAKQLFEWMHKLLIESFDECTNLSKAFREILKSQVILTRLK 66

Query: 75  IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           +V+   S  D TRK+L       I     IE+V +  +   ++C+SSQVGC + C FC +
Sbjct: 67  MVEVFTSKIDDTRKYLFALSDGNI-----IESVRMKYEHGNSVCISSQVGCRMGCKFCAS 121

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
               LVRNLT  E+L QV   + +LG+                 ++SNIV+MG GEPL N
Sbjct: 122 TLDGLVRNLTTAEMLDQVYSIQRILGE-----------------RVSNIVVMGSGEPLDN 164

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
           +DN+ K + I S  MGL+ S+R IT+ST G VP I ++ +E + + LA+SLHA ++++R 
Sbjct: 165 YDNIVKFVRIISSDMGLNISQRNITVSTCGIVPKIKKLADEGLNITLALSLHAPNDEIRK 224

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            ++P+  KY L+ +I AC +Y      RR+++EY ++ G+ND+  +A +L++++ G    
Sbjct: 225 TIMPVANKYALKDIIAACDYYFK-KTGRRVSYEYSLVAGVNDNMEEAKSLVRLVNGRNIH 283

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           INLIP NP    ++  SD+  I  F + +++ G ++ IR   G DI  ACGQL+
Sbjct: 284 INLIPVNPIKERDFKQSDKLKIKAFRDFLEKKGVNATIRREMGRDIDGACGQLR 337


>gi|332291134|ref|YP_004429743.1| radical SAM enzyme, Cfr family [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169220|gb|AEE18475.1| radical SAM enzyme, Cfr family [Krokinobacter diaphorus 4H-3-7-5]
          Length = 346

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 127/360 (35%), Positives = 206/360 (57%), Gaps = 28/360 (7%)

Query: 13  MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72
           +R+  +E L    + Q     R +Q+++W++ +G  DF  M+++S++ R LL+++F I +
Sbjct: 8   IRKLSKEELRDFFVSQGDKPFRGNQVYEWLWQKGAHDFIDMTNLSKDTRILLDENFVINH 67

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
             +   + S DGT K  +      +   + +E+V IP K+R T CVSSQVGCSL C FC 
Sbjct: 68  IRVDQMQRSSDGTIKNGVE-----LHDGLMVESVLIPTKNRTTACVSSQVGCSLNCKFCA 122

Query: 133 TGTQKLVRNLTAEEILLQVLL---ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           T   K +RNL  +EI+ QV++      L  D P                +SNIV MGMGE
Sbjct: 123 TARLKRMRNLNPDEIVDQVVVIDRQSRLYHDKP----------------LSNIVFMGMGE 166

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHAVS 247
           PL N++NV K++   +D  GL  S +RIT+STSG VP I +    +++   LA+SLH+  
Sbjct: 167 PLMNYNNVIKAIDKITDPEGLGMSPKRITVSTSG-VPKIIKKMADDDVKFNLAVSLHSAL 225

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R  ++P N + PL  L +A  ++   +  +RIT+EYV+  GIND   D + L+   K
Sbjct: 226 DNVRTEIMPFNEQMPLADLKEALIYWYEKT-GKRITYEYVVWDGINDRHIDIMALLDFCK 284

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +P+K+N+I +NP    ++  ++ + I  +   ++ +G +  +R  RG DI AACGQL +
Sbjct: 285 AVPSKVNIIEYNPIDDGQFQQANPEAIDRYVSVLEANGVTVTVRRSRGKDIDAACGQLAN 344


>gi|88803607|ref|ZP_01119132.1| radical SAM enzyme, Cfr family protein [Polaribacter irgensii 23-P]
 gi|88780619|gb|EAR11799.1| radical SAM enzyme, Cfr family protein [Polaribacter irgensii 23-P]
          Length = 345

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 198/366 (54%), Gaps = 24/366 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK+ +  + +EEL        +       R +Q+++W++ + +  F  M++IS+E R +L
Sbjct: 3   KKKDIRALTKEELRFFF----VENNDQAFRGNQVYEWLWSKSLHTFDAMTNISKETREML 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F I + ++   + S DGT K  ++     I     +E+V IP + R T CVSSQVGC
Sbjct: 59  AANFVINHIKVDSMQKSKDGTIKNGIKLHDGLI-----VESVLIPTEKRTTACVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C FC T   K +RNL  +EI  QV++             I+       G K+SNIV 
Sbjct: 114 SLDCKFCATSRLKRMRNLNPDEIYDQVVV-------------IDKQSQLYFGHKLSNIVF 160

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
           MGMGEPL N+ N+ KS+ + +   GL  S +RIT+STSG    I ++  EE+   LA+SL
Sbjct: 161 MGMGEPLMNYKNMMKSIQMITSPEGLGMSSKRITVSTSGVPKMIKKMADEEVKFNLAVSL 220

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  +++R  ++P N  +PL+ L ++  ++   +  R IT+EY++  GIND   D   L+
Sbjct: 221 HSAIDEVRTSIMPFNATFPLKDLKESLEYWYEKT-GRAITYEYIVWDGINDRKEDIKALV 279

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
              K IP K+NLI +NP    E+  +    I  +   ++    +  +R  RG DI AACG
Sbjct: 280 AFCKAIPCKVNLIEYNPIDDGEFQQASSAAINNYISNLEMHDITVNVRRSRGKDIDAACG 339

Query: 364 QLKSLS 369
           QL + S
Sbjct: 340 QLANKS 345


>gi|261838701|gb|ACX98467.1| hypothetical protein KHP_1277 [Helicobacter pylori 51]
          Length = 357

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 133/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    FQ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFQEMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLRDNHTFEAVFLKMKDKKIDEETNAILESEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  + +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVKKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|212550675|ref|YP_002308992.1| hypothetical protein CFPG_318 [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548913|dbj|BAG83581.1| conserved hypothetical protein [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 322

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/331 (37%), Positives = 182/331 (54%), Gaps = 25/331 (7%)

Query: 37  QIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARC 96
           QI  W+Y R +   + M++IS   R  LN+H+ I   E + ++ S DG  K+L     R 
Sbjct: 8   QIANWLYKRRVSSIEEMTNISLLHRKQLNEHYYIGKKEYLYKQKSMDGAIKYLFSINNRH 67

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
                 IE+VYIPEK+R TLCVSSQ+GC + C FC TG Q     LT  +I+ Q++    
Sbjct: 68  F-----IESVYIPEKARATLCVSSQIGCKMHCLFCTTGRQGFEGQLTTGDIINQII---- 118

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
                          IP     ++N+V MGMGEPL N + + KSL I + + G ++S +R
Sbjct: 119 --------------SIPESA-SLTNLVFMGMGEPLDNIEVLLKSLEILTANYGFAWSPKR 163

Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           IT+ST G +P + R+ EE  V LAIS+H+  +  R   +PI +KYP++ +I   + Y   
Sbjct: 164 ITISTVGIIPELKRLLEETKVRLAISVHSPFHAERMSWIPIEKKYPIKKIIGLIQQY-NF 222

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
              RR++FEY+    +ND  + A  L ++LKGIP ++NLI ++P        SD K+++ 
Sbjct: 223 RFQRRVSFEYITFGRLNDDIKHASALFRLLKGIPCRVNLIKYHPQQDTVLPASDLKNMIA 282

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F   +        IR+ RG DI AACG L +
Sbjct: 283 FRNYLNSKKIICTIRSSRGEDISAACGMLST 313


>gi|171909569|ref|ZP_02925039.1| YloN [Verrucomicrobium spinosum DSM 4136]
          Length = 390

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 198/369 (53%), Gaps = 38/369 (10%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           SL+G+   EL   L ++G        R  Q+ +W++ + +  F  MS++S+ ++  L   
Sbjct: 25  SLLGLQTAELGAILTELG----EKPYRVKQVQEWVFQKRVESFDAMSNLSKPLQEALATR 80

Query: 68  FSIIYPEIVDEKISCDGTRKWLLR-FPARCIGGPVEIETVYIP-------EKS-RGTLCV 118
            ++        + S D TRK+L + +  R I      ETV IP       E+S R TLCV
Sbjct: 81  LTLRSMTYARVEGSEDTTRKFLFKLYDGRFI------ETVLIPASPSLYGERSDRRTLCV 134

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC+  C FC +G     RNLTA EI+ Q+L    L                  G +
Sbjct: 135 SSQVGCAYDCKFCASGLAGFTRNLTAGEIVEQILQVEKL-----------------AGAR 177

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGV 237
           + N+V MGMGEPL N  NV +++ + +   G++   R +T+STSG  P I ++ +  + V
Sbjct: 178 VDNLVFMGMGEPLANLTNVMRAIEVLNAQWGVNIGARHMTVSTSGLAPQIHKLADFPLQV 237

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LAISLH  SN++RN ++P+NRKYPLE L  A  ++      +R+TFE++++ G+NDS  
Sbjct: 238 RLAISLHGASNEVRNQIMPVNRKYPLEELFPALEYWNS-KKKQRLTFEFILIDGVNDSLE 296

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L +    + AK+NLIP+N   G ++    ++   TF + +      + +R  +G D
Sbjct: 297 QARLLGEHASRLDAKVNLIPYNTVEGLQWKRPSERRQDTFRDIVASHDVMTTLRREKGHD 356

Query: 358 ILAACGQLK 366
           I AACGQL+
Sbjct: 357 IAAACGQLR 365


>gi|169832893|ref|YP_001694228.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pneumoniae Hungary19A-6]
 gi|205829906|sp|B1IAU3|RLMN_STRPI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|168995395|gb|ACA36007.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 361

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 210/368 (57%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLTHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++S+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV       +D  G++   R IT+ST G    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTLGLAHKIRDFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLI +NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLISYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AACGQL+S
Sbjct: 338 AACGQLRS 345


>gi|169827065|ref|YP_001697223.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
           sphaericus C3-41]
 gi|205829785|sp|B1HQE6|RLMN_LYSSC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|168991553|gb|ACA39093.1| UPF0063 protein [Lysinibacillus sphaericus C3-41]
          Length = 380

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 204/363 (56%), Gaps = 25/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           KES+      +LE+ L + G        R +QI+ W+Y + ++ F+ MS++S+ +R  L 
Sbjct: 34  KESIYSFQPHQLEDWLKENG----EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGLRDKLA 89

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F++     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC 
Sbjct: 90  ANFALSTLSTIIKQESKDGTIKFLFQ-----LQDGYSIETVLMRHEYGNSVCVTTQVGCR 144

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L R+L A EI+ QV+  +  L +              V  ++S+IV+M
Sbjct: 145 IGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTLDE--------------VNERVSHIVIM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
           G+GEP  N+D +   L + +   GL+   R IT+STSG VP I +   E++ +  A+SLH
Sbjct: 191 GIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFADEQLQINFAVSLH 250

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A + + R  L+PI R Y L+ L++A R+Y      RR++FEY ++ G NDS   A  L  
Sbjct: 251 APNQEARQKLMPIARAYKLDELMEAVRYYTK-KTGRRVSFEYGLMSGENDSVEIAEELSA 309

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KGI   +NLIP N  P  +Y+ + +  I  F + +K++G +  IR  +G DI AACGQ
Sbjct: 310 LIKGIKCHVNLIPVNYVPERDYVRTSRSQIFAFEKTLKKNGINVTIRREQGSDIAAACGQ 369

Query: 365 LKS 367
           L++
Sbjct: 370 LRA 372


>gi|281419754|ref|ZP_06250753.1| radical SAM enzyme, Cfr family [Prevotella copri DSM 18205]
 gi|281406283|gb|EFB36963.1| radical SAM enzyme, Cfr family [Prevotella copri DSM 18205]
          Length = 355

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 203/375 (54%), Gaps = 30/375 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+ L+G+   EL++    +G+P         Q+ KW+Y + ++    M++IS+  R  L
Sbjct: 4   EKKYLLGLTLAELKQVAKDLGMPA----FTGGQMAKWLYEQHVKSIDEMTNISKANRAKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              + I      D + S DGT K+L  FP R   G   +ETVYIP+K R TLCVSSQVGC
Sbjct: 60  AAEYEIGCFGYSDAQHSVDGTIKYL--FPTR--SGKF-VETVYIPDKDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG Q    +L A +IL QV                    +P V  K++NIV 
Sbjct: 115 KMNCLFCQTGKQGFEGSLPAGDILNQVY------------------SLPEVD-KLTNIVF 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MG GEP+ N DNV ++  I + + G ++S +RIT+S+ G    + R  EE    +AIS+H
Sbjct: 156 MGQGEPMDNLDNVLRATEILTANYGWAWSPKRITVSSVGVKNKLKRFLEESDCHVAISMH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
                 R  L+P  R   +E +++  R+Y   S+ RR++FEY++ KG+NDS + A  +IK
Sbjct: 216 DPIPSERAELMPAERGMGIEQVVELLRNYD-FSHQRRLSFEYIVFKGVNDSMQHAKAIIK 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KG+  + NLI F+  P       D + +  F + + + G  + IR  RG DI AACG 
Sbjct: 275 LVKGLDCRFNLIRFHQIPDIPLQGVDDEKMEQFRDYLTQHGVFTTIRASRGQDIYAACGL 334

Query: 365 LKSLSKRIPKVPRQE 379
           L S SK+I ++   E
Sbjct: 335 L-STSKKIGEIREHE 348


>gi|225856442|ref|YP_002737953.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pneumoniae P1031]
 gi|254807219|sp|C1CJL5|RLMN_STRZP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|225724466|gb|ACO20318.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae P1031]
          Length = 361

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 209/366 (57%), Gaps = 30/366 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLTHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQGIVQE--SADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           +IS+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RISHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV       +D  G++   R IT+S SG    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGI--PAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKSSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDID 337

Query: 360 AACGQL 365
           AACGQL
Sbjct: 338 AACGQL 343


>gi|210622414|ref|ZP_03293146.1| hypothetical protein CLOHIR_01094 [Clostridium hiranonis DSM 13275]
 gi|210154230|gb|EEA85236.1| hypothetical protein CLOHIR_01094 [Clostridium hiranonis DSM 13275]
          Length = 342

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 201/367 (54%), Gaps = 30/367 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L      E++E + +IG        R +Q++ WIY +G + F  M +I + +R  L 
Sbjct: 4   KKALKNFTEAEMKEFMKEIG----EKAFRGTQVYSWIY-KGAKTFDDMKNIPKSLREKLE 58

Query: 66  QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +   I   +I  +  S DG T+K+L       I     IETV +   SR T+CVS+QVGC
Sbjct: 59  EVSYIGNIDIELKLESKDGKTKKYLFLLNDGNI-----IETVMMDYDSRVTVCVSNQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    LVRNL   EIL Q++                  +    G+++SN+V+
Sbjct: 114 RMGCRFCASTMDGLVRNLEPWEILDQIM-----------------KIQEDTGKRVSNLVL 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MG GEPL N+DN K+ L I +D  GL+   R ITLST G VP I  + + EI + LAISL
Sbjct: 157 MGSGEPLDNYDNTKQFLKIVNDENGLNIGYRHITLSTCGIVPKIYELADLEIPINLAISL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  ++ R  ++P+  KY ++ ++DACR+Y   +N RR+TFEY ++KG+ND  ++A  L 
Sbjct: 217 HSPYDEKRKEIMPVANKYSIKEILDACRYYIKKTN-RRVTFEYSLIKGVNDGKKEAEALA 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N     ++   D+  I  F + ++     + +R   G DI  ACG
Sbjct: 276 SLLKGMLCHVNLIPINEVDERDFKKPDKAFIYKFRDYLEERNIPATVRISMGSDISGACG 335

Query: 364 QLKSLSK 370
           QL+   K
Sbjct: 336 QLRRKHK 342


>gi|332204776|gb|EGJ18841.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47901]
          Length = 361

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 209/366 (57%), Gaps = 30/366 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQGIVQE--SADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           +IS+IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RISHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV       +D  G++   R IT+S SG    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGI--PAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKSSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDID 337

Query: 360 AACGQL 365
           AACGQL
Sbjct: 338 AACGQL 343


>gi|167772290|ref|ZP_02444343.1| hypothetical protein ANACOL_03667 [Anaerotruncus colihominis DSM
           17241]
 gi|167665393|gb|EDS09523.1| hypothetical protein ANACOL_03667 [Anaerotruncus colihominis DSM
           17241]
          Length = 359

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 197/368 (53%), Gaps = 37/368 (10%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +++E+   ++G+P    R R  QI+ W++ + + DF  M+++   +R  L + F I    
Sbjct: 12  QQMEKLTAEMGLP----RFRAGQIFGWLHEKRVSDFDEMTNLPAALRSQLAEKFYINAIR 67

Query: 75  IVDEKISC-DGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
           +    +S  DGT K+L       C+      E+V +      TLC+SSQVGC + C FC 
Sbjct: 68  VKKRLVSSIDGTVKYLYELRDGNCV------ESVLMHYHHGNTLCISSQVGCRMGCRFCA 121

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           +     VR+LTA E+L +V +A++                   G ++  +VMMG+GEPL 
Sbjct: 122 STIGGRVRDLTASEMLDEVYMAQA-----------------DSGERVDGVVMMGIGEPLD 164

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLR 251
           NFDNV   L I SD  GL+   R ++LST G V  I  + E  + + L++SLHA ++ +R
Sbjct: 165 NFDNVMAFLEILSDPRGLNLGLRHVSLSTCGLVDRIYALAERRLQLTLSVSLHAPNDAIR 224

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
           +  +P+N +Y ++ L+ ACR Y   +  RRI+FEY ++ G ND+P  A  L   L+G+ A
Sbjct: 225 SRSMPVNARYNVDTLLRACRDYFA-ATGRRISFEYALIAGENDAPEHAAELAARLRGMGA 283

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK----- 366
            +NLIP NP     Y   D+  I  F   ++  G ++ IR   G DI AACGQL+     
Sbjct: 284 HVNLIPVNPVAETGYRRGDRAAIERFQNELRLRGVNATIRRELGADISAACGQLRRQDAD 343

Query: 367 -SLSKRIP 373
            S S R+P
Sbjct: 344 ASTSGRVP 351


>gi|148985883|ref|ZP_01818977.1| hypothetical protein CGSSp3BS71_00907 [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922029|gb|EDK73153.1| hypothetical protein CGSSp3BS71_00907 [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799783|emb|CBW32352.1| Radical SAM protein [Streptococcus pneumoniae OXC141]
          Length = 361

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 210/367 (57%), Gaps = 30/367 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IE V + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IEIVLMCQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    D  G ++           ++++IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVNHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDID 337

Query: 360 AACGQLK 366
           AACGQL+
Sbjct: 338 AACGQLR 344


>gi|113955511|ref|YP_731551.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
           CC9311]
 gi|123132407|sp|Q0I7M1|RLMN_SYNS3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|113882862|gb|ABI47820.1| radical SAM enzyme, Cfr family protein [Synechococcus sp. CC9311]
          Length = 346

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 194/367 (52%), Gaps = 37/367 (10%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLNQ 66
           +L+G  + ELEE  +  G P      R  Q+  W+Y +G+RD QG++ + +  R  L N+
Sbjct: 4   ALLGRSKSELEEWAVAQGQPA----FRGRQLHDWLYAKGVRDLQGITVLPKAWRASLQNE 59

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             S+      + ++S D T K LL            +ETV IP   R T+CVSSQVGC +
Sbjct: 60  GVSVGRLHEQERRVSADATTKLLL-----GTEDGETLETVGIPTDQRLTVCVSSQVGCPM 114

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L R+L   EI+ QVL  R ++                  R+ S++V MG
Sbjct: 115 ACRFCATGKGGLQRSLAGHEIVAQVLSIREVME-----------------RRPSHVVFMG 157

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE----EIG---VML 239
           MGEPL N + V +S+   +D +G+   +RRIT+ST G    + R+ +    ++G     L
Sbjct: 158 MGEPLLNIEAVLESIRCLNDDLGIG--QRRITVSTVGVPHTLPRLADLALKQLGRAQFTL 215

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +  LR  L+P  + YP + L+D CR+Y      RR++FEY++L G+ND P  A
Sbjct: 216 AVSLHAPNQALREELIPTAKTYPYDALLDDCRYYLN-KTGRRVSFEYILLGGVNDHPHHA 274

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L   + G  + +NLI +NP    E+     + I  F   ++R G +  +R  RGLD  
Sbjct: 275 SELADRVGGFQSHVNLIAYNPIEEEEFQRPTTQRIEGFRRVLERRGVAVSLRASRGLDQD 334

Query: 360 AACGQLK 366
           AACGQL+
Sbjct: 335 AACGQLR 341


>gi|307638089|gb|ADN80539.1| Ribosomal RNA large subunit methyl transferase N [Helicobacter
           pylori 908]
 gi|325996690|gb|ADZ52095.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori 2018]
 gi|325998282|gb|ADZ50490.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori 2017]
          Length = 357

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  + E  + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKHTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K+ NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKVLNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K L ++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNAKGLLCTIRESKALDIEAACGQLREKKLQQKI 357


>gi|310659155|ref|YP_003936876.1| fe-s-cluster redox enzyme [Clostridium sticklandii DSM 519]
 gi|308825933|emb|CBH21971.1| putative Fe-S-cluster redox enzyme [Clostridium sticklandii]
          Length = 341

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 198/368 (53%), Gaps = 40/368 (10%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K   + +   ELEE ++K+G      + R  QI+  + V+GI  F  + +IS+ ++  L 
Sbjct: 2   KSDALSLTFSELEEEIVKLG----EQKFRAKQIYPKL-VQGISSFDEIGNISKVLKEKLK 56

Query: 66  QHFSI----IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           +   I    +Y  +  E    DGTRK+LL+   + I     IE V +  K   ++C+SSQ
Sbjct: 57  ERLYISKVSVYKVLTSE---LDGTRKYLLQLDDKNI-----IEAVLMRYKHGLSICISSQ 108

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + CSFC +    LVRNLTA E++ Q+L  ++                  V  +ISN
Sbjct: 109 VGCLMGCSFCASTIDGLVRNLTAGEMIGQILAVQN-----------------DVKERISN 151

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGVM 238
           +VMMG GEPL NFDN+ K L I      L+   R IT+ST G VP +   A++G  I   
Sbjct: 152 VVMMGSGEPLDNFDNLIKFLDIVHQEDSLNIGYRHITISTCGVVPKVNELAKLGYPIN-- 209

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLH  +++ R I++P+   YP++ +I A + Y   +  RR+TFEY ++KG+NDS  D
Sbjct: 210 LAISLHETTHEKRKIIMPVENAYPIDSVIKAAKDYAN-TTKRRVTFEYALIKGVNDSNED 268

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L K+LKG+   +NLIP N      Y   D+  I  F   +K +   + +R   G DI
Sbjct: 269 ANRLSKLLKGMLCHVNLIPVNTVEERTYKRPDKAAINAFLSVLKSNHIEATVRREMGKDI 328

Query: 359 LAACGQLK 366
             ACGQL+
Sbjct: 329 NGACGQLR 336


>gi|282890718|ref|ZP_06299238.1| hypothetical protein pah_c026o038 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499311|gb|EFB41610.1| hypothetical protein pah_c026o038 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 364

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 131/343 (38%), Positives = 193/343 (56%), Gaps = 27/343 (7%)

Query: 32  RMRTSQIWKWIYVRG-IRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL 90
           R+  S I++  +  G +       + +QE+R  + ++ S+    + D K   DG      
Sbjct: 27  RVHASLIYQEFFRSGSLNAAHPAFNNAQEIRTAILENVSVSQLSLGDRKE--DGKTG--- 81

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
           +F  +   G +E+E V IP +S GTLC+SSQVGC + C+FC TG   L+RNLT EEI+ Q
Sbjct: 82  KFLGKTADG-LEVEFVQIPMQSGGTLCISSQVGCQMGCAFCETGKMGLLRNLTTEEIVSQ 140

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           V LA+     F                   N+V MGMGEPL NFD V +++ I +D  G 
Sbjct: 141 VYLAKHH-NQFS----------------FRNLVFMGMGEPLDNFDAVMQAVRIFNDPKGF 183

Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLID 268
            F +RR+T+STSG V  I ++    G    LA+S++A +++LRN L+P+NRKY L+ L +
Sbjct: 184 GFGRRRMTISTSGCVDGIDKLANLGGQAPNLAVSINAPTDELRNRLMPVNRKYDLQTLYE 243

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           A + Y      R+I   YV+L+G ND    AL L + LKG+  KINLIP+NP     +  
Sbjct: 244 AMQGYC-TKTGRQILIAYVLLQGQNDQIEHALQLSEYLKGLNVKINLIPYNPQSRDRFQA 302

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
            D   I  F++ +++ GY + +R  +G DI+AACGQL +L  R
Sbjct: 303 PDLNTIEAFTQSLRQKGYYTLLRLTKGQDIMAACGQLGNLKLR 345


>gi|147678122|ref|YP_001212337.1| Fe-S-cluster redox protein [Pelotomaculum thermopropionicum SI]
 gi|205829798|sp|A5D1B6|RLMN_PELTS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146274219|dbj|BAF59968.1| predicted Fe-S-cluster redox enzyme [Pelotomaculum
           thermopropionicum SI]
          Length = 368

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 181/338 (53%), Gaps = 26/338 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLL 90
           R R  Q+  W++ +G   F+ M+++   +R  L+    I  PEI+ +K+S      K+L 
Sbjct: 40  RYRAGQVAIWVFQKGAESFREMTNLPANLREKLDAAAVISRPEILAKKVSSKKDAVKYLF 99

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
             P         +E+V++      ++CVS+Q GC + C FC +    L RNL+  EI  Q
Sbjct: 100 GLP-----DGQAVESVFMKHAYGNSVCVSTQAGCRMGCRFCASALGGLTRNLSPGEIYDQ 154

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           VL  R                    G +IS++V+MG GEPL N+D     +   +   GL
Sbjct: 155 VLGIRR-----------------DTGERISSVVLMGSGEPLDNYDATLTFIKNVTAPYGL 197

Query: 211 SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
               R IT+ST G VP I R+  E++ + LA+SLHA ++ LR+ILVP+NRKYPL  L+ A
Sbjct: 198 HIGCRHITVSTCGLVPGIRRLAREKLALTLAVSLHAPNDRLRDILVPVNRKYPLTELMAA 257

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG-IPAKINLIPFNPWPGCEYLC 328
           CR Y      RR+TFEY +L G+ND    A  L+++LKG +P  +NLIP NP P      
Sbjct: 258 CRDY-AQETGRRVTFEYALLAGVNDRKEHAEELVRLLKGKMPCHVNLIPANPVPERGVKT 316

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             +  +  F + ++R G +  +R   G DI AACGQL+
Sbjct: 317 PSRLQVELFKKILERHGLAVTVRRGLGADIDAACGQLR 354


>gi|308064180|gb|ADO06067.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori Sat464]
          Length = 357

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 133/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--AGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|182683687|ref|YP_001835434.1| hypothetical protein SPCG_0717 [Streptococcus pneumoniae CGSP14]
 gi|205829907|sp|B2INF0|RLMN_STRPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|182629021|gb|ACB89969.1| hypothetical protein SPCG_0717 [Streptococcus pneumoniae CGSP14]
          Length = 361

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 208/368 (56%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLTHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQGIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L   EI+ Q++L +    +    E            ++++IV
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAERGQDE------------RVNHIV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+S
Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRNFADEGVQVNLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +ND    AL L
Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++LK I   + +NLIP+ P     +Y  S ++ ++ F + +K+ G +  +R   G DI 
Sbjct: 278 AELLKNIKKLSYVNLIPYTPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337

Query: 360 AACGQLKS 367
           AA GQL+S
Sbjct: 338 AAYGQLRS 345


>gi|291549489|emb|CBL25751.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus torques L2-14]
          Length = 346

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 201/354 (56%), Gaps = 29/354 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL++ +  IG        R  QI++W++V+ +  F  M+++S+ +R  L +++ I+   
Sbjct: 11  EELQKEMATIGEKA----FRAKQIYEWLHVKLVDHFDEMTNLSKALREKLEENYEILPVV 66

Query: 75  IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           +++ +IS  DGT K+L R       G V +E+V +  K   ++C+SSQVGC + C+FC +
Sbjct: 67  MLERQISQIDGTNKFLFRL----YDGNV-VESVLMKYKHGNSVCISSQVGCRMGCAFCAS 121

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
               LVRNL+  E+L Q+   + + G+                 ++SN+V+MG GEP+ N
Sbjct: 122 TIGGLVRNLSPSEMLGQIYQIQKISGE-----------------RVSNVVIMGTGEPMDN 164

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
           +DN  K + + +D  GL+ S+R +T+ST G VP +  + +E + + LA+SLH  + + R 
Sbjct: 165 YDNFLKFIHLLTDEHGLNISQRNVTVSTCGIVPKMKELAKEHLQITLALSLHGSNQEKRR 224

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            L+P+  KY +  ++ AC  Y      RR++FEY ++ G+ND+  DA  LI +L+     
Sbjct: 225 KLMPVANKYDITEVLAACDEYFK-ETGRRVSFEYSLVHGVNDTDEDAQELIHLLRHKNCH 283

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           INLIP NP    +++   +K  + F   +++SG +  IR   G DI  ACGQL+
Sbjct: 284 INLIPVNPVKERDFVRPSRKSALNFKNKLEKSGINVTIRREMGSDIDGACGQLR 337


>gi|227500112|ref|ZP_03930183.1| Fe-S-cluster redox enzyme [Anaerococcus tetradius ATCC 35098]
 gi|227217827|gb|EEI83124.1| Fe-S-cluster redox enzyme [Anaerococcus tetradius ATCC 35098]
          Length = 341

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 199/355 (56%), Gaps = 30/355 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +E+E   +K G    + + R  Q+++ I+V+ I DF  M+D+S+E+R  L ++++    +
Sbjct: 11  KEIESIFIKEG----YQKFRAKQVYRQIHVKRINDFDKMTDLSKEMREKLGENYAFPKMK 66

Query: 75  IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           ++ E +S  D T+K+L       I     IE V++    R T+C+SSQVGC + C FC +
Sbjct: 67  LLKEFVSKLDSTKKYLFSLDDGNI-----IEAVFMDYDKRKTICISSQVGCRMGCKFCAS 121

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
               LVRNLTA E++ +V             E I G        +I+NIV+MG+GEPL N
Sbjct: 122 TKNGLVRNLTAGELIEEVY----------ELERING--------EINNIVIMGIGEPLDN 163

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252
           +DN+ K + + +++ G   S R ITLSTSG  P I ++ + ++ V LA+SLH  ++  R 
Sbjct: 164 YDNIVKFIDLITNADGRDLSHRSITLSTSGLAPMIRKLADSKLDVNLALSLHYANDKKRQ 223

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
             +P+  KY +E L++A  +Y   +  RR++FEYV++ G+N++  D  NL  +LK     
Sbjct: 224 KFMPVANKYKIEDLLEATDYYLAKT-KRRVSFEYVVIDGVNNTDSDVDNLYSLLKNKNVH 282

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           INLIP NP     Y       +  F + + +   ++ IR   G DI A+CGQL++
Sbjct: 283 INLIPLNPIEEFAYNRPKSSALTEFRDKLVKRKLNATIRRSMGSDIDASCGQLRN 337


>gi|16331844|ref|NP_442572.1| hypothetical protein sll0098 [Synechocystis sp. PCC 6803]
 gi|3287936|sp|Q55880|RLMN_SYNY3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|1208474|dbj|BAA10642.1| sll0098 [Synechocystis sp. PCC 6803]
          Length = 350

 Score =  212 bits (540), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 181/338 (53%), Gaps = 27/338 (7%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  QI +W+Y +G R    M+D+ +  R   N H+ I    I    ++ D TRK+LLR  
Sbjct: 29  RGKQIHQWLYQKGARSLTAMTDLPKVWREK-NVHYPIGRSVIDHCAVAPDHTRKYLLRLA 87

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              I     IETV IP   R T+CVSSQVGC++ C+FC TG    +RNL + EI+ QVL 
Sbjct: 88  DGLI-----IETVGIPSSKRLTVCVSSQVGCAMDCNFCATGKGGFIRNLESHEIVDQVLT 142

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
            +    +                 ++SN+V MGMGEPL N   V K++   +  +G+   
Sbjct: 143 VQEEFHE-----------------RVSNVVFMGMGEPLLNLPQVVKAVECLNQVVGIG-- 183

Query: 214 KRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           +R +T+ST G    I ++ +  + V  A+SLHA +  LR  L+P  R YPLE L+  CR 
Sbjct: 184 QRALTISTVGLPGKIRQLADRHLQVTFAVSLHAPNQTLRQSLIPSARHYPLEQLLADCRA 243

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +  RR+TFEYV+L G+ND P  A  L + L+G    +NLIP+NP    +Y    + 
Sbjct: 244 YVE-TTGRRVTFEYVLLAGVNDQPVHAEELAQKLRGFQTHVNLIPYNPISEVDYQRPTEA 302

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
            I  F++ +     +  +R  RG+   AACGQL++  K
Sbjct: 303 QINQFAQVLSDHRIAVSVRYSRGVQADAACGQLRASRK 340


>gi|83816743|ref|YP_446232.1| radical SAM protein [Salinibacter ruber DSM 13855]
 gi|294508165|ref|YP_003572223.1| Conserved hypothetical protein containing radical SAM domain
           [Salinibacter ruber M8]
 gi|123753375|sp|Q2S0P9|RLMN_SALRD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|83758137|gb|ABC46250.1| radical SAM enzyme, Cfr family [Salinibacter ruber DSM 13855]
 gi|294344493|emb|CBH25271.1| Conserved hypothetical protein containing radical SAM domain
           [Salinibacter ruber M8]
          Length = 369

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 198/369 (53%), Gaps = 32/369 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L  M R  L++ + + G P    R R  Q++ W+Y +G+ DF  MS++ + +R  L + 
Sbjct: 19  DLKTMGRAGLKDFVAEHGAP----RYRGDQLFNWVYGKGVSDFDRMSNLPKRMRRGLQRD 74

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------EKSRGTLCVSSQ 121
            ++   EIV+++ + D T K L   P+       E ETV IP      E  R T+CVSS+
Sbjct: 75  ATVEDIEIVEQQQAADRTVKALFELPS-----GREAETVLIPAIDERGEARRLTVCVSSE 129

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C FC TG      NLT   I  QV     +  +               GR ++N
Sbjct: 130 VGCAMGCEFCATGRMGFRENLTPGAIFDQVWHMNEVAQEH-------------FGRPVTN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           IV MGMGEPL N+D V  S+SI +D   L+ S ++IT+ST G    I  + ++ +   LA
Sbjct: 177 IVFMGMGEPLLNYDAVLDSISILTDEDSLNLSAQKITVSTVGLARRIKDLADDQLRTNLA 236

Query: 241 ISLHAVSNDLRNILVPINR--KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           +SLHA  N+ R+ ++P+N   K  L  L +A ++Y      R+IT+EY + KG+NDS  D
Sbjct: 237 VSLHAPDNETRSRIMPVNEAEKTSLPALKEALQYYFD-KTGRQITYEYCLFKGVNDSETD 295

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A NL  + +  P+K+NL+ +NP  G  +  + +  +  F + + + G +  +R  RG DI
Sbjct: 296 ARNLADVTRWAPSKVNLLMYNPVEGLNFERTSEAQLDRFVQVLVQEGVTVTVRRSRGQDI 355

Query: 359 LAACGQLKS 367
            AACGQL +
Sbjct: 356 DAACGQLAN 364


>gi|119510469|ref|ZP_01629602.1| hypothetical protein N9414_01747 [Nodularia spumigena CCY9414]
 gi|119464891|gb|EAW45795.1| hypothetical protein N9414_01747 [Nodularia spumigena CCY9414]
          Length = 352

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 134/360 (37%), Positives = 192/360 (53%), Gaps = 31/360 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    EL   + + G P      R  Q+  WIY +G+R    +S   ++ R  + +  
Sbjct: 21  LLGASVAELSLWVQQQGQPA----YRGKQLHDWIYHKGVRSLADISAFPKQWRAEVAE-V 75

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I    I    ++ DGT K+LL+     I     IETV IP   R T+CVS+QVGC + C
Sbjct: 76  PIGRSTIHHRAVAPDGTIKYLLKLADGQI-----IETVGIPTAKRLTVCVSTQVGCPMAC 130

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNL   EI+ QVL  +         ED +        +++S++V MGMG
Sbjct: 131 DFCATGKGGFTRNLARHEIVDQVLTVQ---------EDFQ--------QRVSHVVYMGMG 173

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EPL N +NV KSL   +  +G+   +R +T+ST G    I ++ +  + V LA+SLHA +
Sbjct: 174 EPLLNTENVLKSLKSLNQDVGIG--QRSLTVSTVGIRDRIRQLAQHNLQVTLAVSLHAPN 231

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  R YPLE L+D CR Y  ++  RRI+FEYV+L G ND P  A+ L K L+
Sbjct: 232 QALREELIPSARPYPLEDLLDECREYVEITR-RRISFEYVLLAGFNDLPEHAMQLAKCLR 290

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP    +Y       I  F   +K+   +  +R  RGL+  AACGQL++
Sbjct: 291 GFQSHVNLIPYNPISEVDYKRPSSDRIQAFVNILKQQNTAVSVRYSRGLEADAACGQLRA 350


>gi|326203176|ref|ZP_08193042.1| radical SAM enzyme, Cfr family [Clostridium papyrosolvens DSM 2782]
 gi|325986822|gb|EGD47652.1| radical SAM enzyme, Cfr family [Clostridium papyrosolvens DSM 2782]
          Length = 349

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 198/361 (54%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+ M  EELE+ L ++G      + R  QI+KW    GIR F  M++IS+++R  L + 
Sbjct: 3   NLMDMTLEELEQMLSEMG----QQKFRAKQIFKWTN-SGIRSFDDMTNISKQLRDELVKV 57

Query: 68  FSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   +I D+ +   D T K+L       I     IE+V +  K   T C+SSQ GC +
Sbjct: 58  TKISRIKIADKLQSQIDSTVKYLFELEDGNI-----IESVIMEYKHGFTACISSQAGCRM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +   +  RNLT  E+L QV+  +         ED         G +I +IV+MG
Sbjct: 113 GCKFCASTGAEFSRNLTPGEMLDQVMTMQ---------ED--------SGNRIGHIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEPL N++NV K L I +   GL    R I+LST G VP + ++ +E I + L++SLH+
Sbjct: 156 IGEPLDNYENVIKFLKIVNHPDGLMIGMRNISLSTCGVVPRMLQLAQENIPITLSVSLHS 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             +D R+ ++P+N+ Y ++ LI AC+ Y   S  RRITFEY M+ G NDS +DA  L  +
Sbjct: 216 ARDDKRSAMMPVNKAYCIDKLISACKIYTE-STKRRITFEYAMISGENDSEQDARELAGL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N   G  Y  S +  I  F   ++  G  + +R   G DI AACGQL
Sbjct: 275 LKGMLCHVNLIPVNTVTGNGYKKSSRIHIDKFKNILESKGIETTVRRELGSDINAACGQL 334

Query: 366 K 366
           +
Sbjct: 335 R 335


>gi|327542013|gb|EGF28512.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
           baltica WH47]
          Length = 365

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 131/335 (39%), Positives = 184/335 (54%), Gaps = 22/335 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI +W++      F+ M+D+  ++R  L +HF+I          S DGT K L+R 
Sbjct: 42  FRAKQIRRWLFSGRATSFEEMTDLPAKLRAQLEEHFAIFNATEAVVSKSKDGTEKILVRL 101

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                GG  E+E V + +  R ++CVSSQVGC++ C FC +G   + RNLT  EIL Q+L
Sbjct: 102 ---ADGG--EVECVLLRDGPRRSICVSSQVGCAMGCVFCASGLDGVDRNLTGGEILEQML 156

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L   P  E            ++S+IVMMGMGEPL N   V  +L +A    GL  
Sbjct: 157 RLQQRL---PADE------------RLSHIVMMGMGEPLANLPGVLSALDVARSEDGLGI 201

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S RRIT+ST G  P I ++    I   LA+SLHA +++LR+ LVP+NRK  +E ++ A  
Sbjct: 202 SPRRITISTVGLPPAIDKLAAAGIPYNLAVSLHAPNDELRSELVPVNRKIGIEPVLQAAD 261

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y   S  RR+TFEYV+L GIND    A  L +IL+G    +N+IP+NP  G  Y     
Sbjct: 262 RYFHAS-GRRLTFEYVLLGGINDGDEHARQLSQILRGRSVMMNVIPYNPVAGLPYRTPSG 320

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             I  F   ++ +G +   R  +G +I AACGQL+
Sbjct: 321 AAIARFRAILESAGVNVNFRQRKGDEINAACGQLR 355


>gi|325662241|ref|ZP_08150856.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471493|gb|EGC74714.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 358

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 124/360 (34%), Positives = 199/360 (55%), Gaps = 30/360 (8%)

Query: 10  IGMMR-EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           IG  R EEL+E +  IG        R  Q+++W++V+ +R F  M+++S+ +R  L + +
Sbjct: 8   IGSFRFEELKEEMTSIGEKA----FRAKQVYEWLHVKLVRSFDEMTNLSKPLREKLARQY 63

Query: 69  SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I   E++D ++S  DGT K+L R       G V +E+V +  K   ++C+SSQVGC + 
Sbjct: 64  EIREVEMLDRQVSAMDGTNKFLFRLS----DGHV-VESVLMKYKHGNSVCISSQVGCRMG 118

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +    L RNLT  E+L Q+   + + G+                 +++N+V+MG 
Sbjct: 119 CRFCASTIGGLERNLTPSEMLGQIYQIQRISGE-----------------RVANVVVMGT 161

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N++N+ K + + +D  GL  S+R +T+ST G VP +  + EE + + LA+SLH  
Sbjct: 162 GEPLDNYENLLKFIQMLTDEHGLHISQRNVTVSTCGIVPKMLELAEEHLQITLALSLHGS 221

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           + + R  L+P+  KY L  +++AC  Y      RR+TFEY ++ G+ND+  DA  L  +L
Sbjct: 222 TQEKRKKLMPVANKYELSEVLEACDIYFA-KTGRRMTFEYSLVHGVNDTEEDAKELSALL 280

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
                 INLIP NP    ++    ++    F   +++SG +  IR   G DI  ACGQL+
Sbjct: 281 SHKNCHINLIPVNPIKERDFERPTREAAEKFKNKLEKSGINVTIRREMGSDIDGACGQLR 340


>gi|219669867|ref|YP_002460302.1| radical SAM protein [Desulfitobacterium hafniense DCB-2]
 gi|259491984|sp|B8FS78|RLMN_DESHD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|219540127|gb|ACL21866.1| radical SAM enzyme, Cfr family [Desulfitobacterium hafniense DCB-2]
          Length = 357

 Score =  212 bits (539), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 206/376 (54%), Gaps = 37/376 (9%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN +K+     + + EL +   ++G+P    + R  Q+++W+  + +++++ + +I    
Sbjct: 1   MNTMKRMDCRDLNQSELTQHCAELGLP----KFRGRQVFQWVQQKAVQNWEELRNIGAGD 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI-----PEKSRGT 115
           R  L +   +     V E+I+ DGTRK+L R    C  G   +E V +       + R T
Sbjct: 57  RQKLQEGLFLQPLRKVREQIAQDGTRKFLFR----CADGET-LECVLMDYDRRKNRDRHT 111

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL----LARSLLGDFPGCEDIEGMV 171
           +CVS+Q+GC++ C+FC TG     RNL+  EIL QVL    L R    DF          
Sbjct: 112 VCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQVLDITYLMRQEDPDF---------- 161

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
                 +++NIV MGMGEPL N++ V K++ + +D  G     RR+T+STSG  P I ++
Sbjct: 162 ------QVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSGVAPKIRQL 215

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            ++   V LA+SLH+  N  R+ L+P+NRKYPLE L++AC  Y  L+N RRITFE  ++ 
Sbjct: 216 AKDNPQVGLAVSLHSAHNTTRDQLIPMNRKYPLEELMEACGDYTTLTN-RRITFEIALIS 274

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           G   +   A  +  +LKG  A +NLIP NP  G        K++  F++ ++  G    +
Sbjct: 275 G-QATLEAAQAVGHLLKGQLAHVNLIPVNPVAGTGMARPTAKEVQQFAQSLESMGIPVSV 333

Query: 351 RTPRGLDILAACGQLK 366
           R  +G DI AACGQL+
Sbjct: 334 REEKGTDIDAACGQLR 349


>gi|217034559|ref|ZP_03439968.1| hypothetical protein HP9810_874g16 [Helicobacter pylori 98-10]
 gi|216942979|gb|EEC22462.1| hypothetical protein HP9810_874g16 [Helicobacter pylori 98-10]
          Length = 357

 Score =  212 bits (539), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 133/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRQSVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLRDNHTFEAVFLKMRDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--AGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|261840101|gb|ACX99866.1| hypothetical protein HPKB_1325 [Helicobacter pylori 52]
          Length = 357

 Score =  212 bits (539), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 133/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESIDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLRDNHTFEAVFLKMRDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|251799946|ref|YP_003014677.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
 gi|247547572|gb|ACT04591.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
          Length = 356

 Score =  212 bits (539), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 124/343 (36%), Positives = 195/343 (56%), Gaps = 23/343 (6%)

Query: 30  HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWL 89
           H + R +Q+W+++Y + +  F  M+D+  +   LL ++++I       +++S DGT K L
Sbjct: 23  HKKFRATQVWEYLYRKRVTSFADMTDVHPDCVKLLEENYAIQTLVEHTKQVSKDGTVKLL 82

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
           L+     +     IETV +  K   ++CV++QVGC++ CSFC +G  K  R+LT+ EI+ 
Sbjct: 83  LKLDDGNL-----IETVMMRHKFGLSVCVTTQVGCNIGCSFCASGLLKKSRDLTSGEIVE 137

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q++  +  L +               G K+S+IV+MG+GEP  NF ++   L+   D  G
Sbjct: 138 QIMKIQLHLDE------------SGQGEKVSHIVVMGIGEPFDNFIHLNDFLTTVKDHKG 185

Query: 210 LSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           L+   R IT+STSG    I    + + GV LA+SLHA +N+LR  ++ INR  P+E L+D
Sbjct: 186 LAIGPRHITVSTSGLADKIREFADKDQGVNLAVSLHAPNNELRTRIMKINRAIPIEKLMD 245

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL---KGIPAKINLIPFNPW-PGC 324
           A  +Y   +N RRIT EY++LK +ND P  AL L +++   +     +NLIP+NP     
Sbjct: 246 AIDYYLERTN-RRITLEYILLKDVNDQPEHALELAELVGDRRRSLVNVNLIPYNPVDEHS 304

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +Y  S+   I  F + +K+   S  +R   G DI AACGQL+S
Sbjct: 305 QYQRSENDSIKGFYDTLKKQDVSVSVRLEHGADIDAACGQLRS 347


>gi|32477801|ref|NP_870795.1| Fe-S-oxidoreductase [Rhodopirellula baltica SH 1]
 gi|81658686|sp|Q7UHU7|RLMN_RHOBA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|32448358|emb|CAD77872.1| conserved hypothetical protein-putative Fe-S-oxidoreductase
           [Rhodopirellula baltica SH 1]
          Length = 371

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/335 (39%), Positives = 184/335 (54%), Gaps = 22/335 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI +W++      F+ M+D+  ++R  L +HF+I          S DGT K L+R 
Sbjct: 48  FRAKQIRRWLFSGRATSFEEMTDLPAKLRAQLEEHFAIFNATEAVVSKSKDGTEKILVRL 107

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                GG  E+E V + +  R ++CVSSQVGC++ C FC +G   + RNLT  EIL Q+L
Sbjct: 108 ---ADGG--EVECVLLRDGPRRSICVSSQVGCAMGCVFCASGLDGVDRNLTGGEILEQML 162

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L   P  E            ++S+IVMMGMGEPL N   V  +L +A    GL  
Sbjct: 163 RLQQRL---PADE------------RLSHIVMMGMGEPLANLPGVLSALDVARSEDGLGI 207

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S RRIT+ST G  P I ++    I   LA+SLHA +++LR+ LVP+NRK  +E ++ A  
Sbjct: 208 SPRRITISTVGLPPAIDKLAAAGIPYNLAVSLHAPNDELRSELVPVNRKIGIEPVLQAAD 267

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y   S  RR+TFEYV+L GIND    A  L +IL+G    +N+IP+NP  G  Y     
Sbjct: 268 RYFHAS-GRRLTFEYVLLGGINDGDEHARQLSQILRGRSVMMNVIPYNPVAGLPYRTPSG 326

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             I  F   ++ +G +   R  +G +I AACGQL+
Sbjct: 327 AAIARFRAILESAGVNVNFRQRKGDEINAACGQLR 361


>gi|308062688|gb|ADO04576.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori Cuz20]
          Length = 357

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + C+FC+T     VRN
Sbjct: 81  SLKDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCTFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|331086042|ref|ZP_08335125.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406965|gb|EGG86470.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 358

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/360 (34%), Positives = 199/360 (55%), Gaps = 30/360 (8%)

Query: 10  IGMMR-EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           IG  R EEL+E +  IG        R  Q+++W++V+ +R F  M+++S+ +R  L + +
Sbjct: 8   IGSFRFEELKEEMTSIGEKA----FRAKQVYEWLHVKLVRSFDEMTNLSKPLREKLARQY 63

Query: 69  SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I   E++D ++S  DGT K+L R       G V +E+V +  K   ++C+SSQVGC + 
Sbjct: 64  EIREVEMLDRQVSAMDGTNKFLFRLS----DGHV-VESVLMKYKHGNSVCISSQVGCRMG 118

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +    L RNLT  E+L Q+   + + G+                 +++N+V+MG 
Sbjct: 119 CRFCASTIGGLERNLTPSEMLGQIYQIQRISGE-----------------RVANVVVMGT 161

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N++N+ K + + +D  GL  S+R +T+ST G VP +  + EE + + LA+SLH  
Sbjct: 162 GEPLDNYENLLKFIQMLTDEHGLHISQRNVTVSTCGIVPKMLELAEEHLQITLALSLHGS 221

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           + + R  L+P+  KY L  +++AC  Y      RR+TFEY ++ G+ND+  DA  L  +L
Sbjct: 222 TQEKRKKLMPVANKYELSEVLEACDIYFA-KTGRRMTFEYSLVHGVNDTEEDAKELSALL 280

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
                 INLIP NP    ++    ++    F   +++SG +  IR   G DI  ACGQL+
Sbjct: 281 SHRNCHINLIPVNPIKERDFERPTREAAEKFKNKLEKSGINVTIRREMGSDIDGACGQLR 340


>gi|317013192|gb|ADU83800.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori Lithuania75]
          Length = 357

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRKSVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + C+FC+T     VRN
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDKETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNAKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|317010204|gb|ADU80784.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori India7]
          Length = 357

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKEMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + C+FC+T     VRN
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LQASEIIQQALLIK------------EDNNLPL--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESAKMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|331091583|ref|ZP_08340419.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330403610|gb|EGG83166.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 347

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/365 (34%), Positives = 201/365 (55%), Gaps = 29/365 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+ +     EEL++ L  IG        R+ QI+ W++ +    F+ M+++S+ +R  
Sbjct: 1   MEKKDIRSYTLEELKKELESIG----EKPFRSKQIYSWLHEKLADSFEEMTNLSKALREK 56

Query: 64  LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L + + I    +V+ ++S  DGT K+L       +     +E+V +  K   ++C+SSQV
Sbjct: 57  LEKDYEIYPVTMVERQVSKLDGTNKFLFALRDNHV-----VESVLMRYKHGNSVCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L RNLT  E+L Q+   + + G+                 ++SNI
Sbjct: 112 GCRMGCRFCASTLDGLARNLTPSEMLGQIYQIQKITGE-----------------RVSNI 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL N++N  + + + SD  GL  S+R IT+ST G VPN+ R+ EE   + LA+
Sbjct: 155 VIMGTGEPLDNYENFVRFIKLISDENGLHVSQRNITVSTCGIVPNMKRLAEEKFQITLAL 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH  + + R  L+P+  KY L+ +++AC +Y   +  RRITFEY +++G+ND   DA  
Sbjct: 215 SLHGSTQEKRRELMPVANKYELKEVLEACDNYFDRT-GRRITFEYSLVQGVNDREEDAGE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           LI ILK     +NLIP NP     +    +++   F   +++SG +  IR   G DI  A
Sbjct: 274 LISILKPRNCHLNLIPVNPIKERNFEKPTRQNAEKFKNKLEKSGINVTIRREMGSDIDGA 333

Query: 362 CGQLK 366
           CGQL+
Sbjct: 334 CGQLR 338


>gi|188528191|ref|YP_001910878.1| hypothetical protein HPSH_07275 [Helicobacter pylori Shi470]
 gi|205829774|sp|B2UVG6|RLMN_HELPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|188144431|gb|ACD48848.1| hypothetical protein HPSH_07275 [Helicobacter pylori Shi470]
          Length = 357

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + C+FC+T     VRN
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADEIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|317181108|dbj|BAJ58894.1| hypothetical protein HPF32_1312 [Helicobacter pylori F32]
          Length = 357

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/354 (37%), Positives = 196/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLRDNHTFEAVFLKMKDKKIDGETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G  +     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSNFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|157273452|gb|ABV27351.1| radical SAM enzyme Cfr family protein [Candidatus
           Chloracidobacterium thermophilum]
          Length = 363

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/369 (36%), Positives = 202/369 (54%), Gaps = 25/369 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
            + ++G   +++   + + G+P      R  Q+++ ++ + +   + +S + + VR  L 
Sbjct: 10  NQDMLGQTCQQMCALMAERGLPA----YRGRQLFQALHRQLVETPEEISVLPRAVRTELA 65

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              S+    +     S DGTR++L +     +     IETV+IP++ R TLC+SSQ GC 
Sbjct: 66  AEASLQPLSLAGIFESLDGTRRYLFK-----VHDGYSIETVWIPDRGRVTLCLSSQAGCP 120

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC T T  L RNLTA EI+ QVL    +L D      +     P       N+V+M
Sbjct: 121 MRCAFCATATLGLQRNLTAGEIVAQVLY---VLRD-----TVRQRQQPRPA--AVNLVLM 170

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
           GMGEPL N+D+V  +L + +D  GL    RR+TLST G VP I  +G E     LA+SL 
Sbjct: 171 GMGEPLLNYDHVLHALRVLADPEGLHIVPRRVTLSTVGIVPRIIALGREPDRPRLAVSLT 230

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++LR  L+P+N  YPLE L +AC  +P      RITFEYV+L G+NDS   A  L++
Sbjct: 231 AATDELRARLMPVNLTYPLEALREACLAFPR-HPGERITFEYVLLDGVNDSEDQARALLR 289

Query: 305 ILKGI----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L  +     AK+NLIP NP PG  +     + ++ F   ++  G  + +R PRG DI A
Sbjct: 290 WLAPLRAQEAAKVNLIPHNPVPGIPFRPPKLERVLRFQALLRAKGLPTYLRRPRGQDISA 349

Query: 361 ACGQLKSLS 369
           ACG L + S
Sbjct: 350 ACGMLAATS 358


>gi|311068096|ref|YP_003973019.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           atrophaeus 1942]
 gi|310868613|gb|ADP32088.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           atrophaeus 1942]
          Length = 363

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 191/340 (56%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y + +  F+ M+++S+ +R  L+ HF +   +   ++ S DGT K+L   
Sbjct: 40  FRAAQIFEWLYEKRVSSFEDMTNLSKSLREKLSSHFVLTTLKTAVKQTSQDGTMKFLFE- 98

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +  +   ++CV++QVGC + C+FC +    L RNL A EI+ QV+
Sbjct: 99  ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 154

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S++V+MG+GEP  NF+ +   L I +   GL+ 
Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200

Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I     +++ +  AISLHA + ++R+ L+PIN+ Y L  L++A +
Sbjct: 201 GARHITVSTSGIIPKIYDFADQQMQINFAISLHAPNTEIRSRLMPINKAYKLPELMEAVK 260

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RRI+FEY +  G+ND    A  L  +LKG+   +NLIP N  P  +Y+ + +
Sbjct: 261 YYIE-KTGRRISFEYGLFGGVNDQVEHAEELAALLKGVKCHVNLIPVNYVPERDYVRTPK 319

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             I  F + +K  G +  IR  +G DI AACGQL++  ++
Sbjct: 320 DQIFAFEKTLKSHGVNVTIRREQGHDIDAACGQLRAKERQ 359


>gi|150006853|ref|YP_001301596.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides
           distasonis ATCC 8503]
 gi|205829794|sp|A6L8G0|RLMN_PARD8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|149935277|gb|ABR41974.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 343

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 188/366 (51%), Gaps = 33/366 (9%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM  EEL+    ++G+P    +    Q+  WIY + I     M++I+   R L
Sbjct: 2   VDKRQLLGMTLEELKGVASEVGLPAYAAK----QMADWIYKKKITRISEMTNIAVAKRAL 57

Query: 64  LNQHFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQ 121
           L   F I  YP    +K S DGT K+L         GP   +E+VYIP   R TLCVSSQ
Sbjct: 58  LEDSFEIGAYPPSEYQK-SKDGTIKYLY------AAGPGRFVESVYIPTDDRATLCVSSQ 110

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC TG Q    NLTA +IL Q+                    +P     ++N
Sbjct: 111 VGCKMNCLFCMTGKQGFTANLTANQILNQI------------------QSLPE-NDSLTN 151

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N D + K L I +   G ++S +RIT+ST G    + R  EE    LA+
Sbjct: 152 IVFMGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAV 211

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+     R  L+P+ + +P   +ID  + Y   S+ RR++FEY++ K +NDS + A  
Sbjct: 212 SLHSPYPMERLSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEA 270

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +L GIP ++NLI F+  P      SD   +  F + +   G    IR  RG DI AA
Sbjct: 271 LSCLLGGIPCRVNLIRFHAIPNVSLETSDIAKMEAFRDFLNAKGVVCTIRASRGEDIFAA 330

Query: 362 CGQLKS 367
           CG L +
Sbjct: 331 CGMLST 336


>gi|332674192|gb|AEE71009.1| cfr family radical SAM enzyme [Helicobacter pylori 83]
          Length = 357

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLRDNHTFEAVFLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--AGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  + +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVKKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|113476505|ref|YP_722566.1| radical SAM protein [Trichodesmium erythraeum IMS101]
 gi|123056519|sp|Q110I1|RLMN_TRIEI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|110167553|gb|ABG52093.1| radical SAM enzyme, Cfr family [Trichodesmium erythraeum IMS101]
          Length = 345

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/360 (37%), Positives = 195/360 (54%), Gaps = 31/360 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G+   +L E + + G P      R  Q+++WIY +G +    ++  S++ R  ++ +F
Sbjct: 13  LLGLSLAKLTEWVQQQGQPA----YRGKQLYQWIYQKGAKSLADITVFSKQWREEIS-NF 67

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I    I    ++ D T K+LL+     I     IETV IP   R T+CVSSQVGC + C
Sbjct: 68  PIGRSVIHHRSVAPDATVKYLLKLSDGNI-----IETVGIPTYKRLTVCVSSQVGCPMAC 122

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNL A EI+ QVL  +         ED E        R++S+IV MGMG
Sbjct: 123 DFCATGKGGFSRNLEAHEIIDQVLTVQ---------EDFE--------RRVSHIVFMGMG 165

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247
           EPL N  NV  ++   +  +G+   +R IT+STSG    I ++ + ++ V LA+SLHA +
Sbjct: 166 EPLLNTKNVLAAVRSLNQDLGIG--QRLITISTSGIRDRIRQLAQHKLQVTLAVSLHASN 223

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  + YPL  LI  CR Y  ++  RRI+FEY++L   ND P  A  L K ++
Sbjct: 224 QRLREHLIPSAKFYPLADLISECREYVKITK-RRISFEYILLASFNDLPDHARELAKNMR 282

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G    +NLIP+NP    +Y    Q+ I TF+  +     +  IR  RGL+  AACGQL++
Sbjct: 283 GFQCHVNLIPYNPISEVDYQRPTQEMIKTFANALAEQNIAVSIRYSRGLEANAACGQLRA 342


>gi|323699795|ref|ZP_08111707.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. ND132]
 gi|323459727|gb|EGB15592.1| radical SAM enzyme, Cfr family [Desulfovibrio desulfuricans ND132]
          Length = 348

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 197/366 (53%), Gaps = 30/366 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L K  L   + E+L+E            R R  QIW+W++ + +RD + M+++S+ +R  
Sbjct: 7   LNKTDLEAFVAEDLKEP-----------RYRAEQIWQWLWQKRVRDVEAMTNLSRPLREK 55

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L    +I++PEI     S DGT K+LL+     + G + IETV IP + R + C+S+QVG
Sbjct: 56  LAGMANIVWPEIARVAESRDGTIKFLLKL----VDGKL-IETVLIPMQDRYSQCLSTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC TG     RNLT  EI+ Q+L+ R  L D    E             + N+V
Sbjct: 111 CAMACTFCNTGKLGFERNLTYGEIMGQILVGRQYLADRNMNE-------------LKNLV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N + + + L+      GLS S RR  +ST GF   +  +G+    + AISL
Sbjct: 158 FMGMGEPLLNLETLVRVLTDLPCERGLSLSWRRSMVSTVGFPDKLKILGDLEIALPAISL 217

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + +LR  ++P   +  L+ L+ A   YP +    RITFEY++LK +NDS   A  L 
Sbjct: 218 HAPTQELRARIMPKAARVHLDDLMAALSAYP-MRPRERITFEYLLLKDVNDSMEHADQLA 276

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K++     KINLI +N   G  Y   D+  +  F + +   G ++ IR   G DI AACG
Sbjct: 277 KLIDRRKGKINLIAYNATEGMPYGAPDRDRVEAFEKRLWDHGLTAFIRRSMGADIKAACG 336

Query: 364 QLKSLS 369
           QLK+ S
Sbjct: 337 QLKADS 342


>gi|317182630|dbj|BAJ60414.1| hypothetical protein HPF57_1340 [Helicobacter pylori F57]
          Length = 357

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/346 (37%), Positives = 192/346 (55%), Gaps = 29/346 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRQSVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLRDNHTFEAVFLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--AGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             G ++     +    F++ +   G    IR  + LDI AACGQL+
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349


>gi|108760323|ref|YP_629532.1| radical SAM protein [Myxococcus xanthus DK 1622]
 gi|123374780|sp|Q1DCU1|RLMN1_MYXXD RecName: Full=Ribosomal RNA large subunit methyltransferase N 1;
           AltName: Full=23S rRNA m2A2503 methyltransferase 1
 gi|108464203|gb|ABF89388.1| radical SAM enzyme, Cfr family [Myxococcus xanthus DK 1622]
          Length = 359

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 183/337 (54%), Gaps = 22/337 (6%)

Query: 37  QIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPAR 95
           Q+W  +Y R    F  +  +  E+  +L +H  +       E  S DG T K LLR    
Sbjct: 33  QLWTALYRRHATTFDELDGLKPELLRMLREHTRLGQLATHHESFSSDGFTHKLLLR---- 88

Query: 96  CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
            +     IETV +  K R T+C+S+Q GC++ C FC TG   L R+LT  EI+ Q+L   
Sbjct: 89  -LDDGQTIETVLMRFKGRATVCISTQAGCAMGCVFCATGQMGLSRHLTPGEIVGQILHVN 147

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
            +L               + G  + N+V+MGMGEPL N+++   ++ +  D++GL+   R
Sbjct: 148 RIL--------------RASGETLRNVVLMGMGEPLHNYEHTMSAVDVLVDALGLAMGPR 193

Query: 216 RITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
            ITLST G VP I R+  EE  + LA+SLH  ++  R  LVP  R++PL+ L+DACR+Y 
Sbjct: 194 FITLSTVGVVPGIRRLADEERPIHLAVSLHGATDAERAALVPAGRRWPLDELMDACRYYS 253

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334
                RRI FE+ ++ G ND+   A  L ++L+G+ A +N+IP NP  G +   S  + +
Sbjct: 254 E-KRKRRIFFEWTLISGRNDTAEHAHTLGQLLRGMDAHVNVIPLNPTVGYDGGPSRPESV 312

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             F + +      S +R  RG+DI A CGQLK+  +R
Sbjct: 313 RAFQDVLATYDVPSTVRQRRGIDIDAGCGQLKATVER 349


>gi|288573974|ref|ZP_06392331.1| radical SAM enzyme, Cfr family [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569715|gb|EFC91272.1| radical SAM enzyme, Cfr family [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 341

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/334 (38%), Positives = 182/334 (54%), Gaps = 25/334 (7%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+ +WIY + + D   M+++S+++R  L  H  +  P  VD + S DGT K+L RF 
Sbjct: 28  RADQLCQWIYGKKVFDIHRMTNLSKDLRSKLEGHLYVQPPFAVDVQKSSDGTVKFLWRF- 86

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              + G  E+E+V +   +  T C+S+QVGC L C FC TG Q  VRNLT  EI+   L 
Sbjct: 87  ---LDGQ-EVESVLMDHGNHHTACLSTQVGCPLRCDFCATGRQGFVRNLTVGEIVGHFLA 142

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
             S LG                 + I NIV MGMGEPL N++NVKK++ I +        
Sbjct: 143 MESWLG-----------------QDIKNIVFMGMGEPLLNWENVKKAIEILNHPKMRGMG 185

Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            RRIT+STSG VP I  + +  + V L+ SLHA ++ +R+ L+P+N +YPL  +++A + 
Sbjct: 186 IRRITISTSGVVPGILALADSGLDVRLSFSLHAPNDQIRSKLMPVNERYPLGQVVEALQE 245

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           +       RIT EYV+LK IND P  A  +  +L  +   INLIP+NP     Y      
Sbjct: 246 FQK-KTGNRITVEYVLLKRINDEPSMAYEIAALLSDLDVYINLIPYNPVVE-RYGRPSAS 303

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            I  F   ++  G    +R  +G DI AACGQL+
Sbjct: 304 RINPFMATLRELGLEVELRKEKGTDIDAACGQLR 337


>gi|218438587|ref|YP_002376916.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC
           7424]
 gi|218171315|gb|ACK70048.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7424]
          Length = 355

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 196/362 (54%), Gaps = 31/362 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +E L+G    +L + + K G P      R  Q+ +WIY +G+R    +S   +  R  L 
Sbjct: 15  QEVLLGKSLPQLTQWVQKQGQPS----YRGKQLHQWIYEKGVRSLNEISVFPKSWREDL- 69

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + + I   +I    I+ D TRK+LLR     I     IETV IP + R T+CVSSQVGC 
Sbjct: 70  KDYPIGRSDIHYRSIAPDKTRKYLLRLEDGLI-----IETVGIPTEKRLTVCVSSQVGCP 124

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG     RNLTA EI+ QVL  +         ED +        R++S++V M
Sbjct: 125 MDCDFCATGKGGFTRNLTASEIVDQVLTVQ---------EDFQ--------RRVSHVVFM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           GMGEPL N   V  ++   ++ +G+    R +T+ST G    I ++ + ++ + LA+SLH
Sbjct: 168 GMGEPLLNLKEVVPAVRTLNEDVGIGM--RSLTISTVGLPSKIEKLAQHQLQLTLAVSLH 225

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +  LR  L+P  ++YPL+ L+D C  Y  ++  RR+TFEY++L  +ND P  A  L  
Sbjct: 226 APNQKLREQLIPSAKRYPLKYLLDNCHKYVEMTK-RRVTFEYILLADVNDLPHHAQELAT 284

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            ++G  + +NLIP+NP    +Y   + + I  F + ++    +  +R  RGL   AACGQ
Sbjct: 285 QIRGFQSHVNLIPYNPISEADYQRPNGERINAFMKILQEEKIAVSVRYSRGLQADAACGQ 344

Query: 365 LK 366
           L+
Sbjct: 345 LR 346


>gi|149176961|ref|ZP_01855570.1| hypothetical protein PM8797T_07067 [Planctomyces maris DSM 8797]
 gi|148844216|gb|EDL58570.1| hypothetical protein PM8797T_07067 [Planctomyces maris DSM 8797]
          Length = 368

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/360 (34%), Positives = 192/360 (53%), Gaps = 22/360 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+ ++ +   + L +  I       R  QI +WI+ + + DF  M DIS++ R LL ++
Sbjct: 17  ALLPLITDLTRDQLAQWCIEHESSSYRADQIRRWIFTKRVNDFDAMHDISKKFRDLLKEN 76

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +    IV  + S D T K LL      +     +E V + E  R T+C+S+QVGC++ 
Sbjct: 77  FRLFSTRIVKHQTSKDRTEKLLL-----ALHDGHHVECVLMREPKRNTVCISTQVGCAMG 131

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +G   L RNLT  EIL Q+L    ++G+                 +ISNIV+MG+
Sbjct: 132 CVFCASGLLGLTRNLTMGEILEQILRLDRIIGE---------------EERISNIVVMGI 176

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAV 246
           GEPL N   +  +L   +   G+    R+IT+ST G    I  + +     +LA+SLHA 
Sbjct: 177 GEPLANLSALIPALDTLNHKGGMGIGARKITVSTVGLPVKIRELADVNKSYILAVSLHAP 236

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ +VP N K  ++ ++DA  +Y  ++  RR+TFEY++L G+NDSP  A  L  +L
Sbjct: 237 NDTLRDQIVPTNNKIGIQKILDATDYYY-VTTGRRVTFEYILLAGVNDSPAHAHELACLL 295

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           K   A +NLIP N      Y     +D+  F   + + G +  +R  +G DI AACGQL+
Sbjct: 296 KHRNAHVNLIPANGVEETGYKTPTTEDVDRFFMTLAKGGVNVTVRKRKGDDIDAACGQLR 355


>gi|67921029|ref|ZP_00514548.1| Conserved hypothetical protein 48 [Crocosphaera watsonii WH 8501]
 gi|67857146|gb|EAM52386.1| Conserved hypothetical protein 48 [Crocosphaera watsonii WH 8501]
          Length = 341

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 198/367 (53%), Gaps = 31/367 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L +E+L+G   +EL   + + G P      R  Q+ +W+Y +G+R    +S   +  R  
Sbjct: 3   LTQETLLGKSVDELTTWIKQQGQPG----YRGKQLHQWLYQKGVRSLTEISVFPKAFRED 58

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             + + I    I    I+ D TRK+LL      I     IETV IP   R T+CVSSQVG
Sbjct: 59  F-KDYPIGRSNINHCTIAPDKTRKYLLSLADGLI-----IETVGIPTAKRLTVCVSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG  +  RNL++ EI+ Q+L  +         ED +         ++S++V
Sbjct: 113 CPMNCDFCATGKGEYDRNLSSAEIVDQILTVQ---------EDFQ--------ERVSHVV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
            MGMGEPL N   V K++ I +  +G+   +R +T+ST G    I  +   ++ V  A+S
Sbjct: 156 FMGMGEPLLNTKEVVKAVKILNQDVGIG--QRSLTISTVGIPKKILELAHHQLQVTFAVS 213

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +  LR  L+P  + YPL  L+  CR Y  ++  RR++FEY++L G+ND P  A+ L
Sbjct: 214 LHAANQKLREQLIPSAKFYPLPKLLADCRKYVEIT-GRRVSFEYILLGGVNDLPEQAIEL 272

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K LKG  + +NLIP+NP    +Y  S+ + I  F   ++    +  +R  RGL+  AAC
Sbjct: 273 AKCLKGFQSHVNLIPYNPIEEVDYQRSNAESINIFKTILEEKNIAVSVRYSRGLEANAAC 332

Query: 363 GQLKSLS 369
           GQL+++S
Sbjct: 333 GQLRAMS 339


>gi|229918582|ref|YP_002887228.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium
           sp. AT1b]
 gi|229470011|gb|ACQ71783.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
          Length = 361

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/363 (34%), Positives = 198/363 (54%), Gaps = 25/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SL  +   ELE  +++ G        R  Q++ W+YV+ +  F  M+++ + +R  L 
Sbjct: 15  KPSLYSLTFPELEAWVIEAG----EKAFRAKQLYDWMYVKRVTTFDDMTNVPKALRDKLE 70

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   + + ++ S DGT K+L       +     IETV +  +   ++CV++QVGC 
Sbjct: 71  ASFQLTTLKELVKQESQDGTIKFLFE-----LQDGYSIETVLMRHEYGNSICVTTQVGCR 125

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L RNL A EI  QVL             D++   + + G ++ +IV+M
Sbjct: 126 IGCTFCASTLGGLKRNLEAGEITAQVL-------------DVQ-RALDATGERVDSIVVM 171

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+D + + L   +   GL+   R IT+STSG VP I +  +E + +  AISLH
Sbjct: 172 GIGEPFDNYDELMRFLRTVNHDNGLNIGARHITVSTSGIVPKIYKFADEGMRINFAISLH 231

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A + +LR  L+PINR + L+ L+DA R+Y   S  RRITFEY +  G+ND+   A  L  
Sbjct: 232 APTTELRTKLMPINRAFDLDKLMDAVRYYTEKS-GRRITFEYGLFGGVNDTEEYAHLLAD 290

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGI   +NLIP N     +Y+ + +  I  F + +K    +  IR  +G DI AACGQ
Sbjct: 291 LLKGIKCHVNLIPVNHVLERDYVRTPRAQIFAFEKVLKDRNVNVTIRREQGSDIDAACGQ 350

Query: 365 LKS 367
           L++
Sbjct: 351 LRA 353


>gi|115379954|ref|ZP_01467009.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
 gi|115363034|gb|EAU62214.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
          Length = 384

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 192/367 (52%), Gaps = 27/367 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ-EVRHLLNQ 66
           SL  + R  L + L + G    H       +W+ +Y R ++    +  + + E+   L +
Sbjct: 35  SLHDLSRAALGQRLAEWGYSAFH----RDALWEALYRRHVKSLDELEGLVRPELVTRLRE 90

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           H  +  P +  E  S DG T K LLR           IETV +  K R T+CVS+Q GC+
Sbjct: 91  HTCLRSPTVHHETFSSDGHTHKLLLR-----QHDGQTIETVLMRFKGRATVCVSTQAGCA 145

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L R+L+  EI+ QVL    LL                 G  + NIV+M
Sbjct: 146 MGCVFCATGQMGLARHLSPGEIVAQVLHVVGLLR--------------QTGETLRNIVLM 191

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           GMGEPL N+D   +++ I  D  GL+   R ITLST G VP I R+ +E   V LA+SLH
Sbjct: 192 GMGEPLHNYDATLEAVDILVDPRGLAIGPRFITLSTVGVVPGIRRLADEDRPVQLAVSLH 251

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
             ++  R  LVP+ +++PL  L+DACR+Y      RRI FE+ ++ G ND+   A  L +
Sbjct: 252 GATDAERAALVPVGKRWPLNELMDACRYY-SEKRGRRIFFEWTLIAGQNDTVDQAHTLGQ 310

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+ A +N+IP NP  G     S  + +  F + +   G  S +R  RG+DI A CGQ
Sbjct: 311 LLKGMEAHVNVIPLNPTVGFGGTPSTPEAVRAFQQVLTSYGLPSTVRQRRGIDIDAGCGQ 370

Query: 365 LKSLSKR 371
           LK+  +R
Sbjct: 371 LKAAVER 377


>gi|310819181|ref|YP_003951539.1| ribosomal RNA large subunit methyltransferase n [Stigmatella
           aurantiaca DW4/3-1]
 gi|309392253|gb|ADO69712.1| Ribosomal RNA large subunit methyltransferase N [Stigmatella
           aurantiaca DW4/3-1]
          Length = 360

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 192/367 (52%), Gaps = 27/367 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ-EVRHLLNQ 66
           SL  + R  L + L + G    H       +W+ +Y R ++    +  + + E+   L +
Sbjct: 11  SLHDLSRAALGQRLAEWGYSAFH----RDALWEALYRRHVKSLDELEGLVRPELVTRLRE 66

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           H  +  P +  E  S DG T K LLR           IETV +  K R T+CVS+Q GC+
Sbjct: 67  HTCLRSPTVHHETFSSDGHTHKLLLR-----QHDGQTIETVLMRFKGRATVCVSTQAGCA 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L R+L+  EI+ QVL    LL                 G  + NIV+M
Sbjct: 122 MGCVFCATGQMGLARHLSPGEIVAQVLHVVGLL--------------RQTGETLRNIVLM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           GMGEPL N+D   +++ I  D  GL+   R ITLST G VP I R+ +E   V LA+SLH
Sbjct: 168 GMGEPLHNYDATLEAVDILVDPRGLAIGPRFITLSTVGVVPGIRRLADEDRPVQLAVSLH 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
             ++  R  LVP+ +++PL  L+DACR+Y      RRI FE+ ++ G ND+   A  L +
Sbjct: 228 GATDAERAALVPVGKRWPLNELMDACRYY-SEKRGRRIFFEWTLIAGQNDTVDQAHTLGQ 286

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+ A +N+IP NP  G     S  + +  F + +   G  S +R  RG+DI A CGQ
Sbjct: 287 LLKGMEAHVNVIPLNPTVGFGGTPSTPEAVRAFQQVLTSYGLPSTVRQRRGIDIDAGCGQ 346

Query: 365 LKSLSKR 371
           LK+  +R
Sbjct: 347 LKAAVER 353


>gi|323487018|ref|ZP_08092330.1| hypothetical protein HMPREF9474_04081 [Clostridium symbiosum
           WAL-14163]
 gi|323692060|ref|ZP_08106307.1| radical SAM enzyme [Clostridium symbiosum WAL-14673]
 gi|323399666|gb|EGA92052.1| hypothetical protein HMPREF9474_04081 [Clostridium symbiosum
           WAL-14163]
 gi|323503860|gb|EGB19675.1| radical SAM enzyme [Clostridium symbiosum WAL-14673]
          Length = 350

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 209/367 (56%), Gaps = 33/367 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  +  +  EEL++ L  +G        R  Q+++W++ +    F  M+++S+++R  
Sbjct: 1   MNKTDIKSLTHEELQDLLKGMG----EKPFRAGQLYRWMHEKLAASFDEMTNLSKDLRGK 56

Query: 64  LNQH--FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           L ++  F+ + P  V  +IS  D TRK+L         G V IE+V +  K   ++C+SS
Sbjct: 57  LAENCTFTALKPVCV--RISQIDDTRKYLFELE----DGNV-IESVLMKYKHGNSVCISS 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC +    L RNLT  E+L Q+                   +    G ++S
Sbjct: 110 QVGCRMGCRFCASTLDGLERNLTPSEMLDQIY-----------------RIQRDTGERVS 152

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           N+V+MG GEPL N+DN+ + + + +   GL+ S+R +T+ST G VP I ++ EE + + L
Sbjct: 153 NVVVMGSGEPLDNYDNLIRFIRLLTGEGGLNISQRNVTVSTCGIVPGIRKLAEEDLQITL 212

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA ++++R  L+P+ ++Y L  ++DACR+Y      RR+TFEY +++G+ND+  +A
Sbjct: 213 ALSLHAPNDEVRRTLMPVAKRYGLNEVMDACRYYFE-KTGRRLTFEYSLVQGVNDNLDEA 271

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L++++K     +NLIP NP    EY+ S ++ I  F   +++SG +  +R   G DI 
Sbjct: 272 KALVRLIKDQHGHVNLIPVNPIKEREYVQSGRQAIEAFKNQLEKSGINVTVRREMGRDID 331

Query: 360 AACGQLK 366
            ACGQL+
Sbjct: 332 GACGQLR 338


>gi|317178131|dbj|BAJ55920.1| hypothetical protein HPF16_1323 [Helicobacter pylori F16]
          Length = 357

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + C+FC+T     +RN
Sbjct: 81  SLRDNHTFEAVFLKMRDKKIDGETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFIRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--AGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLIPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|269926508|ref|YP_003323131.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790168|gb|ACZ42309.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 371

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 204/370 (55%), Gaps = 31/370 (8%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N    +SL+ +  +EL E +     P+     R  Q+W+ IY +   D + M+ + + +R
Sbjct: 14  NHKPAKSLLDLSLQELREWIRLRDYPE----YRAVQVWQAIYRQLEVDPEKMTSLPKALR 69

Query: 62  HLLNQHFSIIYPEIVDEK-ISCDG--TRKWLLRFPARCIGGPVEIETVYIPE-KSRGTLC 117
            +L+  F   +P I   +    DG  T K L +     +     IE+V +     R T+C
Sbjct: 70  EVLSAEFP--FPNITPVRTFVADGGDTEKVLFQ-----LEDGNAIESVLMEYMDGRATVC 122

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQ GC++ C+FC TG     RNL+A EI+ Q+L     L D               G+
Sbjct: 123 VSSQAGCAIGCTFCATGLGGFYRNLSAGEIVYQILYFSKKLRD--------------KGK 168

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIG 236
           +++NIV MGMGEPL N D V +S+    +  G++FS RRIT+ST+G V  I R    ++ 
Sbjct: 169 RLTNIVYMGMGEPLANLDAVWRSVENLHEPTGMNFSARRITISTAGLVHQIDRFPPTDLQ 228

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V LAISLHA ++DLR  ++PINR++P+  LI + + Y   ++ RRITFEYV++ G N S 
Sbjct: 229 VNLAISLHAPNDDLRTSIMPINRRWPISELIASAKRYVERTH-RRITFEYVLIAGCNSSK 287

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A +L  +L+G+   +NLIP N  PG  +     +++ TF + +  +G    +R  RG 
Sbjct: 288 EHARDLSNLLRGLLCHVNLIPLNRVPGSPFEPPSTEEVNTFRDILLSAGIPCTVRLERGA 347

Query: 357 DILAACGQLK 366
           DILAACGQL+
Sbjct: 348 DILAACGQLR 357


>gi|317179603|dbj|BAJ57391.1| hypothetical protein HPF30_1294 [Helicobacter pylori F30]
          Length = 357

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLIDNHTFEAVFLKMKDKKIDGETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVANKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  + +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVKKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|220905656|ref|YP_002480967.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425]
 gi|219862267|gb|ACL42606.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425]
          Length = 367

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/360 (35%), Positives = 196/360 (54%), Gaps = 31/360 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G  + EL E +  +G P      R  Q+ +W+Y +G+R    +S   +  R  + +  
Sbjct: 29  LLGASQAELTEWITALGQPA----YRGQQLHQWLYQKGVRSLTEISVFPKAWRQQVAE-V 83

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           ++   ++     + DGT K+LLR     I     IETV IP   R T+CVSSQVGC + C
Sbjct: 84  AVGRSQLHYRSQAQDGTVKYLLRLDDGQI-----IETVGIPSNRRLTVCVSSQVGCPMGC 138

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     R+L   EI+ QVL  ++   DF              G+++SN+V MGMG
Sbjct: 139 DFCATGKGGFRRHLDRHEIVDQVLTVQA---DF--------------GQRVSNVVFMGMG 181

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVS 247
           EPL N + V +++   +  +G+   +R +T+ST G    I R+    +   LA+SLHA +
Sbjct: 182 EPLLNLEAVLEAVRCLNQDVGIG--QRFLTISTVGIPGQIRRLANHHLQATLAVSLHASN 239

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  R YPLE L+  CR Y  L+  RR++FEY++L G+ND P+ AL L + L+
Sbjct: 240 QPLRAQLIPSARHYPLENLLQECRDYVQLT-GRRVSFEYILLGGLNDLPQHALELAQHLR 298

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP    +Y     + +  F + ++    ++ IR  RGLD  AACGQL++
Sbjct: 299 GFQSHVNLIPYNPISEVDYQRPSPQRMQHFLQLLQEHHIAASIRRSRGLDQNAACGQLRA 358


>gi|323344170|ref|ZP_08084396.1| cfr family radical SAM enzyme [Prevotella oralis ATCC 33269]
 gi|323094899|gb|EFZ37474.1| cfr family radical SAM enzyme [Prevotella oralis ATCC 33269]
          Length = 346

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/363 (34%), Positives = 194/363 (53%), Gaps = 29/363 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+GM   EL+    ++ +P         Q+ KW+Y + +     M++IS+  R  L + +
Sbjct: 8   LLGMTLSELKTVAKELEMPA----FTGGQMAKWLYRQHVASIDDMTNISKSNREKLKKAY 63

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           ++     +DE+ S DGT K+L  FP         +ETVYIP++ R TLCVSSQVGC + C
Sbjct: 64  TVGCASPIDEQHSNDGTIKYL--FPTE---QGKYVETVYIPDEERATLCVSSQVGCKMNC 118

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG Q    NLTA +IL Q+                    +P    K++NIV MG G
Sbjct: 119 LFCQTGKQGYEGNLTATDILNQIY------------------ALPERD-KLTNIVFMGQG 159

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EP+ N +NV ++ +I +     ++S +RIT+S+ G    + R  EE    +AISLH+  +
Sbjct: 160 EPMDNLENVLRATNILTADYAYAWSPKRITVSSVGVRNKLKRFLEESDCHVAISLHSPIH 219

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           + R  L+P     P+  ++D  R+Y   S+ RR++FEY++  GIND+   A  ++K+LKG
Sbjct: 220 EQRAGLMPAEGGMPIREIVDLLRNYD-FSHQRRLSFEYIVFGGINDTQTHAKEIVKLLKG 278

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +  +INLI F+  P      +D + +  F + +   G  + IR  RG DI AACG L + 
Sbjct: 279 LDCRINLIRFHQIPNVPLRGADDRTMEAFRDYLTAHGLFTTIRASRGEDIFAACGLLSTA 338

Query: 369 SKR 371
            K 
Sbjct: 339 KKH 341


>gi|262384399|ref|ZP_06077534.1| cfr family radical SAM enzyme [Bacteroides sp. 2_1_33B]
 gi|301308675|ref|ZP_07214627.1| radical SAM enzyme, Cfr family [Bacteroides sp. 20_3]
 gi|262294102|gb|EEY82035.1| cfr family radical SAM enzyme [Bacteroides sp. 2_1_33B]
 gi|300833199|gb|EFK63817.1| radical SAM enzyme, Cfr family [Bacteroides sp. 20_3]
          Length = 343

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 188/366 (51%), Gaps = 33/366 (9%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM  EEL+    ++G+P    +    Q+  WIY + I     M++I+   R L
Sbjct: 2   VDKRQLLGMTLEELKGVASEVGLPAYAAK----QMADWIYKKKITRISEMTNIAVAKRAL 57

Query: 64  LNQHFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQ 121
           L   F I  YP    +K S DGT K+L         GP   +E+VYIP   R TLCVSSQ
Sbjct: 58  LEDSFEIGAYPPSEYQK-SKDGTIKYLYA------AGPGRFVESVYIPTDDRATLCVSSQ 110

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC TG Q    NLTA +IL Q+                    +P     ++N
Sbjct: 111 VGCKMNCLFCMTGKQGFTANLTANQILNQI------------------QSLPE-NDSLTN 151

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N D + K L I +   G ++S +RIT+ST G    + R  EE    LA+
Sbjct: 152 IVFMGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAV 211

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+     R  L+P+ + +P   +ID  + Y   S+ RR++FEY++ K +NDS + A  
Sbjct: 212 SLHSPYPMERLSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEA 270

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +L GIP ++NLI F+  P      SD   +  F + +   G    IR  RG DI AA
Sbjct: 271 LSCLLGGIPCRVNLIRFHAIPNVSLETSDIVKMEAFRDFLNAKGVVCTIRASRGEDIFAA 330

Query: 362 CGQLKS 367
           CG L +
Sbjct: 331 CGMLST 336


>gi|302345666|ref|YP_003814019.1| 23S rRNA m2A2503 methyltransferase [Prevotella melaninogenica ATCC
           25845]
 gi|302149773|gb|ADK96035.1| 23S rRNA m2A2503 methyltransferase [Prevotella melaninogenica ATCC
           25845]
          Length = 350

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 195/365 (53%), Gaps = 29/365 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+GM   EL+E    +G+P         QI KW+Y + ++    M++IS+  R  L 
Sbjct: 5   KKYLLGMTLGELKEVAKSLGMPA----FTGGQIAKWLYTQHVKSIDEMTNISKANREKLA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             ++I   E +D + S DGT K+L  FP     G   +ETVYIP++ R TLCVSSQVGC 
Sbjct: 61  AEYAIGCKEPIDAQHSKDGTIKYL--FPTD--SGKF-VETVYIPDEDRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +L+A +IL Q+                    +P    K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLSATDILNQIY------------------SLPERD-KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DNV ++  I +   G  +S +RIT+S+ G    + R  +E    +AIS+H 
Sbjct: 157 GQGEPMDNLDNVLRTTEIMTADFGYGWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R+ L+P  +   ++ +I+   +Y   S+ RR++FEY++ K  NDS   A  ++++
Sbjct: 217 PLHEQRSELMPAEKGMSIDSIIELLSNYD-FSHQRRLSFEYIVFKDFNDSEEHAKAIVQL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+  ++NLI F+P P       D   +  F   + + G  + IR  RG DI AACG L
Sbjct: 276 LKGLDCRMNLIRFHPIPNIPLQGVDDHRMEKFRNYLTQHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSK 370
            +  K
Sbjct: 336 STAKK 340


>gi|16078638|ref|NP_389457.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309450|ref|ZP_03591297.1| hypothetical protein Bsubs1_08696 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313775|ref|ZP_03595580.1| hypothetical protein BsubsN3_08632 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318699|ref|ZP_03599993.1| hypothetical protein BsubsJ_08566 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322970|ref|ZP_03604264.1| hypothetical protein BsubsS_08672 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3287951|sp|O34617|RLMN_BACSU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|2337804|emb|CAA74265.1| YloN protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633947|emb|CAB13448.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 363

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 191/340 (56%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y + +  F+ M+++S+++R  LN  F +   +   ++ S DGT K+L   
Sbjct: 40  FRAAQIFEWLYEKRVSSFEDMTNLSKDLREKLNTRFVLTTLKTAVKQTSQDGTMKFLFE- 98

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +  +   ++CV++QVGC + C+FC +    L RNL A EI+ QV+
Sbjct: 99  ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 154

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S++V+MG+GEP  NF+ +   L I +   GL+ 
Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200

Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I     +++ +  AISLHA + ++R+ L+PINR Y L  L++A +
Sbjct: 201 GARHITVSTSGIIPKIYEFADQQMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMEAVK 260

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RRI+FEY +  G+ND    A  L  +L+G+   +NLIP N  P  +Y+ + +
Sbjct: 261 YYIN-KTGRRISFEYGLFGGVNDQVEHAEELADLLEGVKCHVNLIPVNYVPERDYVRTPR 319

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             I  F + +K  G +  IR  +G DI AACGQL++  ++
Sbjct: 320 DQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLRAKERQ 359


>gi|308185186|ref|YP_003929319.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori SJM180]
 gi|308061106|gb|ADO03002.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori SJM180]
          Length = 357

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L + F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|325680303|ref|ZP_08159863.1| 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8]
 gi|324108012|gb|EGC02268.1| 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8]
          Length = 348

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 202/361 (55%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            ++G+M EELEE +L IG      + R  QI++W++V+ +  F  M+++S ++R  L + 
Sbjct: 11  DILGLMPEELEEQILLIG----EKKFRAKQIFEWLHVKRVDSFDKMTNLSVQLRDKLKKI 66

Query: 68  FSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F +    IV   + + D T K+L R P         +E+V +      T+CVS+QVGC +
Sbjct: 67  FCLKSLFIVKRLESNTDNTVKYLYRLP-----DGNHVESVIMEYNHGNTVCVSTQVGCKM 121

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +      R+L+A EILLQ+  A                     GRKI   V+MG
Sbjct: 122 GCKFCASTIAGYKRDLSASEILLQIYEAER-----------------DSGRKIGGAVLMG 164

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
           +GEPL N+DNV   L + S   G++ S R +++ST G VP I  + E ++G+ L++SLHA
Sbjct: 165 IGEPLDNYDNVVGFLKVLSCEAGMNMSLRHVSVSTCGLVPRIYELAELKLGITLSVSLHA 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N  R+ ++P+N +Y +  L+ ACR+Y  ++  RRI+FEY ++ G NDS   A  L  +
Sbjct: 225 TNNRARSEIMPVNNRYDIAELMAACRYYFKVT-GRRISFEYALIDGHNDSQAAAEELAAL 283

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G    +N+IP N     +Y  SD+K  + F + ++  G ++ +R   G DI AACGQL
Sbjct: 284 LRGFTCHVNIIPVNKIKERDYR-SDRKAAMRFQKRLEALGLNATVRRTLGADIDAACGQL 342

Query: 366 K 366
           +
Sbjct: 343 R 343


>gi|315585812|gb|ADU40193.1| Fe-S-cluster redox protein [Helicobacter pylori 35A]
          Length = 357

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYWWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRKSVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ +T  I E  + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLRDNHTFEAVFLKMKDKKIDEKTNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--AGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|268611643|ref|ZP_06145370.1| radical SAM protein [Ruminococcus flavefaciens FD-1]
          Length = 352

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 202/366 (55%), Gaps = 32/366 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  ++ +   ELE  L ++G      + R  QI++W++V+ + DF  M+DIS ++R +
Sbjct: 1   MEKIDILSLSLTELENVLTELG----EKKFRAKQIFQWLHVKRVTDFDKMTDISVQLRTV 56

Query: 64  LNQHFSIIYPEIVDEKI-SC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L + F I     V++K+ SC D T K+L R           +ETV +      ++CVS+Q
Sbjct: 57  LKEKFCI-NGLFVEKKLESCMDNTVKYLYRLSDGNF-----VETVLMEYNYGHSICVSTQ 110

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC +     VR+L   EIL+Q+                        G ++S 
Sbjct: 111 VGCKMGCRFCASAIAGYVRDLEPSEILMQIYETER-----------------DSGVRVSG 153

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240
           +V+MG+GEPL N+DNV + LS+ SD  G + S R ++LST G VP I  + +  +GV L 
Sbjct: 154 VVLMGIGEPLDNYDNVVRFLSLLSDKNGNNMSLRHVSLSTCGIVPRIYDLAKLRLGVTLC 213

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLH   N+ R+ ++P+N KY ++ LI AC+ Y   +  RRITFEY ++ G+N +  DA 
Sbjct: 214 VSLHCPDNEGRSKIMPVNNKYDIDSLITACKDYID-ATGRRITFEYAVIDGVNSTDADAD 272

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L  +L+GI   +NLIP N      Y  + +  +  F++ + + G ++ +R   G DI A
Sbjct: 273 KLADLLRGINCHVNLIPVNKVKERNYRTA-RSGVADFAKRLGKRGINATVRRTLGSDIEA 331

Query: 361 ACGQLK 366
           ACGQL+
Sbjct: 332 ACGQLR 337


>gi|308183521|ref|YP_003927648.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori PeCan4]
 gi|308065706|gb|ADO07598.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori PeCan4]
          Length = 357

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRKSVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + C+FC+T     VRN
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +ND+   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDNLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|212695668|ref|ZP_03303796.1| hypothetical protein ANHYDRO_00185 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677341|gb|EEB36948.1| hypothetical protein ANHYDRO_00185 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 343

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 125/357 (35%), Positives = 196/357 (54%), Gaps = 34/357 (9%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EELE+  L +G      + R  Q+++ I+V  I DF  M+D+S+++R  L+++F     +
Sbjct: 13  EELEKIFLDLGFK----KFRAKQVFRQIHVNKINDFSKMTDLSKKMREDLDKYFYFPKIK 68

Query: 75  IVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           +V E K + D T+K+L     + I     IE V++   +R T+C+SSQVGC + C FC +
Sbjct: 69  VVKEFKSNLDKTKKYLFELDDKNI-----IEAVFMEYNNRNTICISSQVGCRMGCKFCAS 123

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
               L R+L+A EI+ ++ L      D                  ISNIV+MG+GEPL N
Sbjct: 124 TKNGLERSLSASEIIEEIYLLERENSD------------------ISNIVVMGIGEPLDN 165

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGVMLAISLHAVSNDL 250
           F N++K + I +D  G + S R IT+ST G V  I   A +G +I   LA+SLH   ++ 
Sbjct: 166 FSNIEKFIKIITDQKGRNLSHRSITVSTVGLVDKIYDLANLGYDIN--LAVSLHYAFDEK 223

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R   +P   KY ++ +I AC +Y   +  RR+++EYV++ G+N+   D   L K+ KG  
Sbjct: 224 RMAYMPSGNKYKIKDIIKACDYYLEKT-KRRVSYEYVVIDGVNNLREDIDQLEKLFKGKN 282

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             INLIP NP    +Y  +    +  F + + + G ++ IR   G DI A+CGQL++
Sbjct: 283 IHINLIPLNPIEEFKYSKTKNNVMDQFQQKLTKKGLNATIRRSMGSDIDASCGQLRN 339


>gi|297380586|gb|ADI35473.1| radical SAM enzyme, Cfr family [Helicobacter pylori v225d]
          Length = 357

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + C+FC+T     VRN
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDGETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--AGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  + +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVKKWP-LEQHKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|254779939|ref|YP_003058046.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori B38]
 gi|254001852|emb|CAX30102.1| Conserved hypothetical protein [Helicobacter pylori B38]
          Length = 357

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L + F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + C+FC+T     VRN
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDAETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAV 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|15612390|ref|NP_224043.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori J99]
 gi|11387372|sp|Q9ZJI4|RLMN_HELPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|4155932|gb|AAD06899.1| putative [Helicobacter pylori J99]
          Length = 357

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 196/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  + E  + T+CVS Q+GC + CSFC+T     VR+
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRD 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EANNLPI--EKALNIVFMGMGEPLNNLDEVCKAV 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K L ++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNAKGLLCTIRESKALDIEAACGQLREKKLQQKI 357


>gi|239618306|ref|YP_002941628.1| radical SAM enzyme, Cfr family [Kosmotoga olearia TBF 19.5.1]
 gi|239507137|gb|ACR80624.1| radical SAM enzyme, Cfr family [Kosmotoga olearia TBF 19.5.1]
          Length = 343

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 200/362 (55%), Gaps = 34/362 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+ M  +EL + L+  G    + + R SQI+ WIY + + +F  M+++ ++ R  L+  F
Sbjct: 3   LLEMTLDELRKVLVDEG----YEKYRASQIFDWIYKKKVLNFSNMTNLPKDFRKFLSGTF 58

Query: 69  SIIYPE--IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              YPE  IV   +S  DGT K+L +       G   IE+V +      T C+S+QVGC 
Sbjct: 59  R--YPEMTIVRRSLSKIDGTEKFLWKLH----DGEF-IESVILRHPDHTTFCISTQVGCQ 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC TG     RNL+  EI+ QV+                     S+G+ ++NIV M
Sbjct: 112 LGCIFCATGMSGFKRNLSVSEIVGQVIFMEK-----------------SMGKNVTNIVFM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEP  N DNV KS+ I  +  G +   R  T+ST+G    I R+ +  + V L++SLH
Sbjct: 155 GMGEPFLNTDNVFKSIEILHEPAGRNLGIRHFTISTAGIPEGIIRLADSGMDVRLSLSLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++ R++L+PIN++Y ++ L+ +  +Y   +N RRIT EY+++ GINDS  DA  L K
Sbjct: 215 AATDEKRSMLMPINKRYNIQQLMASLEYYQRKTN-RRITIEYILIDGINDSIEDAKQLAK 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           + K +   +N+I  NP        S +K +  F+  +K+ G  + IRT +G DI AACGQ
Sbjct: 274 LFKHLKIFVNIIAINPVVPTLKRPSREK-VERFAIELKKHGIEAAIRTEKGSDIDAACGQ 332

Query: 365 LK 366
           L+
Sbjct: 333 LR 334


>gi|108563778|ref|YP_628094.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori HPAG1]
 gi|123246875|sp|Q1CRK2|RLMN_HELPH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|107837551|gb|ABF85420.1| hypothetical protein HPAG1_1353 [Helicobacter pylori HPAG1]
          Length = 357

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L + F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRKSVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ +T  I E  + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDEKTNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S RRIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPRRITVSTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|289422335|ref|ZP_06424185.1| radical SAM enzyme, Cfr family [Peptostreptococcus anaerobius
           653-L]
 gi|289157280|gb|EFD05895.1| radical SAM enzyme, Cfr family [Peptostreptococcus anaerobius
           653-L]
          Length = 352

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 202/361 (55%), Gaps = 32/361 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +  EE+ E +L +G      + R +Q++ W+Y + IRDF  M ++ + +R  L +  
Sbjct: 11  LKNLTEEEMVEFILSLG----EKKFRAAQVYSWVY-KNIRDFDEMKNVPKSLRDKLREK- 64

Query: 69  SIIYPEIVDEKISC--DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           SII    ++ K+    D T+K+L       I     IETV +   SR T+CVS+QVGC +
Sbjct: 65  SIIGNLDIELKLESKIDNTKKYLFLLNDGNI-----IETVAMDYDSRLTVCVSNQVGCRM 119

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L R+L A EIL Q++                  V   +G+++SNIVMMG
Sbjct: 120 GCNFCASTIGGLSRHLEAWEILDQIM-----------------KVQEDLGKRVSNIVMMG 162

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
            GEPL NFDN  + L + ++  GL+   R ITLS  G V  I  + + +I + LAISLH+
Sbjct: 163 SGEPLDNFDNSMRFLKLVNEKNGLNIGNRHITLSRCGLVDRILELADMQIPINLAISLHS 222

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R  ++PI +KY ++ L+DACR+Y   +N RR+TFEY ++K  N++ R+A  L+++
Sbjct: 223 PYDEERKEIMPIAKKYTIKELMDACRYYISKTN-RRVTFEYALIKDKNNTDREAKKLVEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+   +NLIP NP    +Y   + + I  F   + ++     IR   G DI  ACGQL
Sbjct: 282 LRGMLCHVNLIPINPIAERDYEKPNIEYINKFKNYLDKNKIPVSIRNSMGSDISGACGQL 341

Query: 366 K 366
           +
Sbjct: 342 R 342


>gi|209526448|ref|ZP_03274975.1| radical SAM enzyme, Cfr family [Arthrospira maxima CS-328]
 gi|209493083|gb|EDZ93411.1| radical SAM enzyme, Cfr family [Arthrospira maxima CS-328]
          Length = 346

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 131/360 (36%), Positives = 193/360 (53%), Gaps = 31/360 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    EL + + + G P      R  Q+++WIY +G +  + ++   ++ R  L    
Sbjct: 11  LLGTSLPELTDWVQQQGQPA----YRGKQLYQWIYQKGAKSLEEITVFPKQWRSQLAT-I 65

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            +    I    ++ DGT K+LL+     I     IETV IP   R T+CVSSQVGC + C
Sbjct: 66  PVGRSTIHYRAVASDGTIKYLLKLSDGQI-----IETVGIPTHDRLTVCVSSQVGCPMAC 120

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNL   EI+ QVL  +         ED +        R++S+IV MGMG
Sbjct: 121 DFCATGKGGFFRNLETHEIVDQVLTVQ---------EDFQ--------RRVSHIVFMGMG 163

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247
           EPL N  N   +++  +  +G+   +R ITLST G    I ++ E ++ + LA+SLHA +
Sbjct: 164 EPLLNTQNAIAAITCLNRDIGIG--QRMITLSTVGIPNRIRQLAEYQLQITLAVSLHASN 221

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  + YPLE LI  CR Y  L+  RR++FEYVML G+ND P  A  L  +++
Sbjct: 222 QTLREQLIPSAKTYPLESLISECRDYVKLT-GRRVSFEYVMLSGVNDLPSHATELASLMR 280

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP    +Y       I  F + +++   +  +R  RGLD  AACGQL++
Sbjct: 281 GFQSHVNLIPYNPINEVDYQRPSPSQIQDFFKELEQRRVAVSVRYSRGLDADAACGQLRA 340


>gi|260887299|ref|ZP_05898562.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185]
 gi|330838947|ref|YP_004413527.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185]
 gi|260862935|gb|EEX77435.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185]
 gi|329746711|gb|AEC00068.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185]
          Length = 350

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 199/363 (54%), Gaps = 26/363 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +++ GM  E ++E    +    R  + R  Q+ +W+Y +  + F  M+++ + +R  L  
Sbjct: 2   KNIFGMTLEAMQEDFAAL----RLEKYRARQVAEWLYKKCAKRFSDMTNLPKSLRTELET 57

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            ++I  P +     + DG T K+LL F          +E V + +    ++C+S+Q GC+
Sbjct: 58  RYTIDTPLLRTRLDAADGRTSKFLLAF-----SDGAAVEAVLMRQPYGNSICISTQAGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +    L R+LTA E+L +VL              IE M + S G K+  +V+M
Sbjct: 113 MGCSFCASTLHGLARDLTAGEMLAEVLF-------------IEEM-LKSQGGKVDTMVLM 158

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N++NV   L +  +   L+ S R ITLSTSG VP I R+ EE + + L+ISLH
Sbjct: 159 GSGEPLMNYENVVNFLRLLHEEYVLNISYRSITLSTSGIVPAIDRLAEEGMPLTLSISLH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A   ++R+ L+PINRKYPL  ++ A + Y      RR+T+EY++++ +ND  R+A  L +
Sbjct: 219 APREEIRSELMPINRKYPLSDVVAAGKRYAE-KTGRRVTYEYILIRDVNDGEREAQELAE 277

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L G  A +NLIP NP     +    ++    F   + R   ++ +R   G DI AACGQ
Sbjct: 278 LLAGQLASVNLIPINPVKERGFERPSEERTAAFCRALTRRHITATVRREMGADIQAACGQ 337

Query: 365 LKS 367
           L++
Sbjct: 338 LRN 340


>gi|154485074|ref|ZP_02027522.1| hypothetical protein EUBVEN_02797 [Eubacterium ventriosum ATCC
           27560]
 gi|149734027|gb|EDM50146.1| hypothetical protein EUBVEN_02797 [Eubacterium ventriosum ATCC
           27560]
          Length = 320

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 123/333 (36%), Positives = 189/333 (56%), Gaps = 29/333 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +EL++ L  +G        R  QI+KWI++  ++ F  M++IS+ +R  L++ F I+  E
Sbjct: 15  DELKQELANMG----EKPFRAGQIYKWIHIEKVQSFDEMTNISKNLRETLDEQFEIVTLE 70

Query: 75  IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
            V   IS  DGTRK+L R      GG V IE+V +      ++C+S+Q GC + C FC +
Sbjct: 71  PVRVLISKIDGTRKYLFRIK----GGAV-IESVLMRYHHGNSVCISTQSGCRMGCRFCAS 125

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
               L RNL   E+L Q+              +IE     ++G ++SNIV+MG GEPL N
Sbjct: 126 TLNGLDRNLRPSELLEQIY-------------EIE----KNIGERVSNIVLMGSGEPLDN 168

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252
           F+NV K L + SD  GL+ S+R ITLST G VP +  +      + LA+SLHA  +D R 
Sbjct: 169 FENVTKFLELISDENGLNISQRNITLSTCGLVPRMKELANMHPQITLALSLHASDDDTRR 228

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            L+PI RKY +  ++DAC++Y      RRITFEY ++ G+ND+  +A  L  ++K +   
Sbjct: 229 ELLPIARKYTIAEVLDACKYYFD-KTGRRITFEYSLVAGVNDTVEEAEKLSALVKNLNCH 287

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
           +NLIP NP    +++ + +K +  F   +++ G
Sbjct: 288 VNLIPVNPIKERDFVQTGKKAVERFKRVLEKIG 320


>gi|317014803|gb|ADU82239.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori Gambia94/24]
          Length = 357

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 196/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + CSFC+T     VR+
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRD 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAV 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K L ++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNAKGLLCTIRESKALDIEAACGQLREKKLQQKI 357


>gi|126663212|ref|ZP_01734210.1| hypothetical protein FBBAL38_07660 [Flavobacteria bacterium BAL38]
 gi|126624870|gb|EAZ95560.1| hypothetical protein FBBAL38_07660 [Flavobacteria bacterium BAL38]
          Length = 346

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 202/367 (55%), Gaps = 24/367 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+ +  + +E+L    +  G        R +Q+++W++ +    F+ M+++S+E R +
Sbjct: 3   IEKKDIRALTKEQLRTFFVSNGDKA----FRGNQVYEWLWSKRAHTFEDMTNVSKETRAM 58

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F I + ++   + S DGT K  +R     I     +E+V IP ++R T CVSSQVG
Sbjct: 59  LQANFVINHIKVDTLQRSEDGTVKNAVRLHDDLI-----VESVLIPTETRTTACVSSQVG 113

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL C+FC T   K +RNL   EI  QV              D E  +     R +SNIV
Sbjct: 114 CSLDCNFCATARLKRMRNLEPGEIYDQV-----------AAIDNESRLY--YDRPLSNIV 160

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
            MGMGEPL N+ NV K++ + + S GL  S +RIT+STSG    I ++  +E+   LA+S
Sbjct: 161 FMGMGEPLMNYPNVMKAIDMITSSEGLGMSPKRITVSTSGVSKMIKKMADDEVKFKLAVS 220

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+   ++RN ++P  + +PL  L +A  ++   + + ++T+EYV+ KGIND  +    L
Sbjct: 221 LHSAIEEIRNEIMPFTKSFPLTELREALEYWYRKTKS-KVTYEYVVWKGINDDKKSIDAL 279

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K  K +P K+NLI +NP     +  + +     +   + +S   + +R  RG DI AAC
Sbjct: 280 VKFCKYVPCKVNLIEYNPIDDGMFQQASEDATNAYITALAKSNIVAKVRRSRGKDIDAAC 339

Query: 363 GQLKSLS 369
           GQL + S
Sbjct: 340 GQLANKS 346


>gi|282857182|ref|ZP_06266426.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455]
 gi|282584968|gb|EFB90292.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455]
          Length = 365

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 116/336 (34%), Positives = 180/336 (53%), Gaps = 24/336 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R    Q+ +WIY + + DF+ M+++S+ +R  L +   I  P++   + + DGTRK+L R
Sbjct: 48  RYTADQLCQWIYKKKVFDFRAMTNLSKALRERLPELLEIRLPKLAKRQTAADGTRKYLWR 107

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +     +E+V +   +  T C+SSQVGC L C FC TG Q   RNL+A EI+   
Sbjct: 108 -----LDDGEYVESVLMDHGNHYTACISSQVGCPLRCEFCATGQQGFKRNLSAGEIVSHF 162

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
               S                  VG  I+N+V MGMGEPL N++NV K++ +  +     
Sbjct: 163 AAMES-----------------DVGHDINNVVFMGMGEPLLNYENVVKAVRMFLEPKMRG 205

Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            S R +T+STSG    I R+ +E + + L +SLHA +N+LR+ ++P+N ++PL  +  A 
Sbjct: 206 LSVRHVTISTSGIPEGIRRLADEGLDIYLCLSLHAPNNELRSRIMPVNERFPLGAVFSAL 265

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
            ++   +  R +T EYVMLK +ND+P  A  L  +   +   +NLIP+NP  G ++    
Sbjct: 266 EYWQKKTGVR-LTIEYVMLKNVNDTPDCAYELATLFSNLQVYVNLIPYNPVAGTQFARPS 324

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
              I  F + +K       +R   G DI AACGQL+
Sbjct: 325 ASRIAPFMKILKGLNVECEVRKEHGADIDAACGQLR 360


>gi|188585964|ref|YP_001917509.1| radical SAM enzyme, Cfr family [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|205829820|sp|B2A2K6|RLMN_NATTJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|179350651|gb|ACB84921.1| radical SAM enzyme, Cfr family [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 351

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 201/368 (54%), Gaps = 31/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+SL  +   EL+E   + G  Q     R  QI+ W+Y++ +   + MS+I +++R  L 
Sbjct: 5   KQSLKDLTLNELQEYFSRKGWQQ----FRAKQIFDWMYIQQVDSIEVMSNIPKKLRQELM 60

Query: 66  QHFSIIYPEIVDEKISC---DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           ++ +I   E+    I     DGT K+L       +   + +ET  +      T+C+SSQ 
Sbjct: 61  ENCTINDLELDSNNIYTSPTDGTIKFL-----SVLKDGIGVETTIMKYDYGNTVCISSQA 115

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C FC + T    R+L+  E++ QVL+A  +L   PG E             I+NI
Sbjct: 116 GCNMNCVFCASTTGGKERDLSPGEMIDQVLMANKVL---PGSE------------SINNI 160

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V+MG GEPL N+ ++ K L I +D  GL+   R IT+ST G VP I  +  EE+ + LAI
Sbjct: 161 VVMGSGEPLENYQHLIKFLKIVNDGKGLNIGMRHITVSTCGLVPEIYNLAEEELQLNLAI 220

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +++LRN L+P+N+ YP+  L++AC+ Y      RRITFEYV++K  NDS   A  
Sbjct: 221 SLHAPNDELRNKLIPLNKIYPIHELLEACQVYFQ-KTGRRITFEYVLIKDFNDSIDLAKE 279

Query: 302 LIKILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L + L  +  P  +NLIPFNP    ++       I  F   ++ +     +R  RG+D+ 
Sbjct: 280 LSETLTALKMPVHVNLIPFNPVEETKFTAPPSSRISDFKNNLQSNNIGVTVRKERGVDVD 339

Query: 360 AACGQLKS 367
            ACGQL+S
Sbjct: 340 GACGQLRS 347


>gi|226356358|ref|YP_002786098.1| ribosomal RNA large subunit methyltransferase N [Deinococcus
           deserti VCD115]
 gi|259491983|sp|C1CVX7|RLMN_DEIDV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|226318348|gb|ACO46344.1| conserved hypothetical protein [Deinococcus deserti VCD115]
          Length = 343

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 174/335 (51%), Gaps = 22/335 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++V+G+  F  M+++  E R  L + + +     ++   S DG+ K+L   
Sbjct: 17  FRRRQLLEWVFVQGVGTFDAMTNLPAEARAELARSYHLNPFREIETVRSADGSVKYLF-- 74

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +    ++E VY+P   R T+CVS+ VGC   C+FC TG     RNLT  EI+ QVL
Sbjct: 75  ---TLTDGRQMEAVYMPYLDRKTICVSTMVGCPARCAFCATGAMGFGRNLTPGEIVAQVL 131

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                 G  P              R+I N+V MGMGE + N++N  ++  I      L  
Sbjct: 132 AVAGGEGIGP--------------REIRNLVFMGMGEAMLNYENTMQAARILLHPQALGM 177

Query: 213 SKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
           SKRR+TLST G    I ++  E  +G+ LAISLHA   D R  ++P      +  ++ A 
Sbjct: 178 SKRRVTLSTVGIAKGIRQLAAEDDLGIKLAISLHAPDEDTRQRIIPTGAANSIAEIMAAA 237

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R Y  ++  RRIT EY ML+GIND    A  L  +L+G+ + +NLIP NPW G  +  S 
Sbjct: 238 RDYQAVTG-RRITLEYTMLRGINDHLWQAELLADVLQGLVSHVNLIPMNPWDGSGFESST 296

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +  I  F + ++  G    +R  RG D  AACGQL
Sbjct: 297 EDQIQAFYDTLEARGVDVSVRRSRGKDAGAACGQL 331


>gi|208435296|ref|YP_002266962.1| hypothetical protein HPG27_1349 [Helicobacter pylori G27]
 gi|254807184|sp|B5Z947|RLMN_HELPG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|208433225|gb|ACI28096.1| hypothetical protein HPG27_1349 [Helicobacter pylori G27]
          Length = 357

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L + F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEIAHVRKSIDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + C+FC+T     VRN
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCTFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|295109190|emb|CBL23143.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus obeum A2-162]
          Length = 346

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 196/356 (55%), Gaps = 28/356 (7%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  EEL+E +++IG        R  QI+ W++   +  +  M++I + ++  L  +   +
Sbjct: 7   MNMEELKELMVQIG----EKPFRAKQIYGWLHEHLVTSYDEMANIPKSLKEKLKDYPITV 62

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
             E+  +    DGTRK+L R     +     IE+V +  K   ++C+SSQ GC + C FC
Sbjct: 63  LEELDVQTSKVDGTRKYLFRLSDGNM-----IESVLMRYKYGNSVCISSQAGCRMGCRFC 117

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            +    L RNL   E+L Q+   ++                 S+G +ISN+V+MG GEPL
Sbjct: 118 ASTIGGLTRNLLPSEMLDQIYRIQT-----------------SIGERISNVVVMGTGEPL 160

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDL 250
            N+DN+ + + I ++  G+  S+R +T+ST G VP I  + +E + + LA+SLHA +++ 
Sbjct: 161 DNYDNLLRFIHILTEDGGIHISQRNLTVSTCGLVPRIYELADEKLQMTLAVSLHAPNDEK 220

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R  L+PI  KY ++ L+DACR+Y      RRITFEY ++ G+NDS  +A  L   LKG+ 
Sbjct: 221 RRELMPIANKYSVDELLDACRYYFD-KTGRRITFEYSLVAGVNDSKENAQELAGRLKGLN 279

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             +NLIP NP     ++ S ++ +  F   +++ G +  IR   G DI  ACGQL+
Sbjct: 280 CHVNLIPVNPVRERSFVRSTRQAVENFKINLEKCGINGTIRREMGSDIDGACGQLR 335


>gi|217032118|ref|ZP_03437618.1| hypothetical protein HPB128_16g78 [Helicobacter pylori B128]
 gi|216946266|gb|EEC24874.1| hypothetical protein HPB128_16g78 [Helicobacter pylori B128]
          Length = 365

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/357 (36%), Positives = 197/357 (55%), Gaps = 31/357 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L + F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEIAHVRKSVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  + E  + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLKDNHTFEAVLLKMKDKKIDGETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKAFNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +ND    A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDGLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRIPKV 375
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I K 
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQILKT 360


>gi|296133296|ref|YP_003640543.1| radical SAM enzyme, Cfr family [Thermincola sp. JR]
 gi|296031874|gb|ADG82642.1| radical SAM enzyme, Cfr family [Thermincola potens JR]
          Length = 356

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 191/353 (54%), Gaps = 28/353 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL   L+++G        R  QI  W++ +G+ +   M+++   +R  L++   I   E
Sbjct: 13  EELTAFLIELG----EKPFRAKQIADWVFKKGVAEIADMTNLPLSLRERLSKTAYIGRLE 68

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
           I+ E+ S DGT K+L       +     +ETV++      ++CVS+QVGC + C FC + 
Sbjct: 69  IMKEQQSRDGTTKYLFE-----LADGNTVETVFLKHNYGNSVCVSTQVGCKMGCLFCAST 123

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
                RNL+  EI  QVL                  +     +++S++V+MG GEPL N+
Sbjct: 124 IGGFYRNLSPGEIYDQVL-----------------RIEQDKKKRVSSVVIMGSGEPLDNY 166

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
           + V K + + +    L+   R ITLST G VP I ++ EE + + L++SLHA +N+LRN 
Sbjct: 167 EAVLKFIRLITAPYALNVGMRHITLSTCGLVPQIYKLAEEKLALTLSVSLHAPNNELRNK 226

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           L+P+NRKYPLE LI AC  Y      RRITFEY ++K +NDS   A  L +++KG+   +
Sbjct: 227 LMPVNRKYPLEELIPACHEYIK-KTGRRITFEYTLIKDVNDSQGHAEELARLIKGMLCHV 285

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           NLIP NP     +     + +  F   ++R+   + +R   G DI AACGQL+
Sbjct: 286 NLIPVNPVAERRWYRPSTETVKRFQTILERNRVPATVRREMGTDIDAACGQLR 338


>gi|260437315|ref|ZP_05791131.1| radical SAM enzyme, Cfr family [Butyrivibrio crossotus DSM 2876]
 gi|292810227|gb|EFF69432.1| radical SAM enzyme, Cfr family [Butyrivibrio crossotus DSM 2876]
          Length = 349

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 125/355 (35%), Positives = 194/355 (54%), Gaps = 31/355 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL--NQHFSIIY 72
           +EL E ++ +G P    + R  Q+++W++VR +  +  M++I   ++  L  N  ++ +Y
Sbjct: 12  DELTEYIVSLGEP----KFRAKQLYEWMHVRLVPGYDEMTNIPASLKAKLKENTFYASLY 67

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
           PE V +    DGT K+L R       G   IE+V +      ++C+SSQ GC + C FC 
Sbjct: 68  PERV-QVSKEDGTSKYLFRL----YDGNY-IESVLMHYHHGDSVCISSQAGCRMGCRFCA 121

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           +    L RNL   E+L Q+   +SL G+                 ++SN+V+MG GEP  
Sbjct: 122 STLDGLARNLYPSEMLDQIYRIQSLTGN-----------------RVSNVVVMGSGEPFD 164

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251
           NFDN  K   + +D  GL+ S R +T+ST G VP I  + +  + + LAISLH+ ++++R
Sbjct: 165 NFDNFIKFEKLLTDENGLNISARNLTVSTCGLVPRIYELADMRLQITLAISLHSPTDEMR 224

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             L+P+  KY +  ++DAC +Y      RRITFEY ++KG ND    AL L  ++KG+  
Sbjct: 225 KKLMPVANKYSISEIMDACSYYIE-KTGRRITFEYSLVKGENDGSEHALILADLVKGMNC 283

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            INLIP NP    +Y  SD K I  F + ++++     +R   G DI  ACGQL+
Sbjct: 284 HINLIPVNPIKERDYRQSDTKSIKKFKDILEKNRIQVTVRREMGRDIDGACGQLR 338


>gi|258515524|ref|YP_003191746.1| radical SAM enzyme, Cfr family [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779229|gb|ACV63123.1| radical SAM enzyme, Cfr family [Desulfotomaculum acetoxidans DSM
           771]
          Length = 349

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 203/365 (55%), Gaps = 29/365 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++   L+ +   ++E  +L+  +P    + R  QI +W++ +G+  F  M+++  ++R  
Sbjct: 1   MESTGLMDLTLPQIENWVLQEAMP----KFRARQIAEWMFQKGVDSFDQMTNLPLDLRKK 56

Query: 64  LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LNQ   +   +++ +++S   GT K+L +     +     +ETV + +    ++CVSSQV
Sbjct: 57  LNQTAYLEDLQVIKKQVSAQTGTVKYLFK-----LKDGQAVETVLMRQVYGLSVCVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC ++C  C +    LVRNL+A EI  QV+                  V      +IS++
Sbjct: 112 GCRMSCRLCASTLSGLVRNLSAGEIYAQVM-----------------SVQKEQSSRISHV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL NF +    ++  +   GL+   R ITLST G VP I  + E+ + + LA+
Sbjct: 155 VIMGSGEPLDNFQHTLAFMTNINADYGLNIGYRHITLSTCGLVPEILALAEKKLPLTLAV 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +N LR+ +VP+NRKYPL++L+ AC+ Y  L+  RR++FEY ++KG+ND+   A  
Sbjct: 215 SLHAPNNKLRDSIVPVNRKYPLQVLLKACKDYTKLT-GRRVSFEYALIKGLNDTTVCAQE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LK     INLIP NP P      +  ++I  F + +++ G    +R   G DI AA
Sbjct: 274 LADLLKNFSCHINLIPVNPVPERGLQRTPVQNIQRFKDILEKEGLKVTVRREMGSDIDAA 333

Query: 362 CGQLK 366
           CGQL+
Sbjct: 334 CGQLR 338


>gi|284051696|ref|ZP_06381906.1| radical SAM protein [Arthrospira platensis str. Paraca]
 gi|291570690|dbj|BAI92962.1| ribosomal RNA large subunit methyltransferase N [Arthrospira
           platensis NIES-39]
          Length = 344

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 131/360 (36%), Positives = 192/360 (53%), Gaps = 31/360 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    EL + + + G P      R  Q+++WIY +G +  + ++   ++ R  L    
Sbjct: 11  LLGTSLPELTDWVQQQGQPA----YRGKQLYQWIYQKGAKSLEEITVFPKQWRSQLAT-I 65

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            +    I    ++ DGT K+LL+     I     IETV IP   R T+CVSSQVGC + C
Sbjct: 66  PVGRSTIHYRAVASDGTIKYLLKLSDGQI-----IETVGIPTHDRLTVCVSSQVGCPMAC 120

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNL   EI+ QVL  +         ED +        R++S+IV MGMG
Sbjct: 121 DFCATGKGGFFRNLETHEIVDQVLTVQ---------EDFQ--------RRVSHIVFMGMG 163

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247
           EPL N  N   +++  +  +G+   +R ITLST G    I ++ E ++ + LA+SLHA +
Sbjct: 164 EPLLNTQNAIAAITCLNRDIGIG--QRMITLSTVGIPNRIRQLAEYQLQITLAVSLHASN 221

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  + YPLE LI  CR Y  L+  RR++FEYVML G+ND P  A  L  +++
Sbjct: 222 QTLREQLIPSAKTYPLEALISECRDYVKLT-GRRVSFEYVMLAGVNDLPTHAAELASLMR 280

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP    +Y       I  F + ++    +  +R  RGLD  AACGQL++
Sbjct: 281 GFQSHVNLIPYNPINEVDYQRPSPSQIQGFVKELEERRVAVSVRYSRGLDADAACGQLRA 340


>gi|254421960|ref|ZP_05035678.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7335]
 gi|196189449|gb|EDX84413.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7335]
          Length = 372

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 131/360 (36%), Positives = 195/360 (54%), Gaps = 31/360 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   E L E +++ G P      R  Q+ +WIY +GIR    ++  S++ R  ++  F
Sbjct: 32  LLGRSIEALTEWVIQHGQPA----YRGKQLHQWIYQKGIRSLDEVTVFSKKWRAEVS-GF 86

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            +    I     S DGT K+LLR     I     IE V IP   R T+CVSSQ+GC + C
Sbjct: 87  PVGRSHIHHRSESPDGTIKYLLRLRDGLI-----IEAVGIPSDKRLTVCVSSQIGCPMGC 141

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNL   EI+ QVL  +         ED +        R++SNIV MGMG
Sbjct: 142 DFCATGKGGFTRNLETYEIVDQVLTVQ---------EDFQ--------RRVSNIVFMGMG 184

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EPL N + V  ++   +  +G+   +R +T+ST G   +I R+ E+ + + LA+SLHA +
Sbjct: 185 EPLLNTEAVIGAVRSLNQDIGIG--QRMMTVSTVGIPGHIRRLAEQQMQITLAVSLHASN 242

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  ++YPL  L+D CR Y  ++  RR+TFEY++L  +ND    A  L   L+
Sbjct: 243 QALRTRLIPSAKQYPLSALLDECRDYVKMT-GRRVTFEYILLADLNDRSEHAAELASELR 301

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP    +Y    +  +  F++ +K  G +  +R  RGL+  AACGQL++
Sbjct: 302 GFQSHVNLIPYNPISEVDYQRPSRARVEGFTQQLKDKGIAVSVRYSRGLEKDAACGQLRA 361


>gi|260588063|ref|ZP_05853976.1| radical SAM enzyme, Cfr family [Blautia hansenii DSM 20583]
 gi|260541590|gb|EEX22159.1| radical SAM enzyme, Cfr family [Blautia hansenii DSM 20583]
          Length = 348

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 190/336 (56%), Gaps = 25/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLR 91
            R  QI++W++ +    F  MS++S  +R  L +   +   ++++ + S  DGT+K+L  
Sbjct: 26  FRAKQIYEWLHQKQAESFDEMSNLSAALREKLKERCVLTTLKMLEVQTSKIDGTQKYLFA 85

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
            P     G V +E+V +  K   ++C+SSQVGC + C FC +      RNL   E+L Q+
Sbjct: 86  LP----DGNV-VESVLMKYKHGNSVCISSQVGCKMGCRFCASTIGGWTRNLLPSEMLEQI 140

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
              + L G+                 ++SN+V+MG GEPL N++N+ + + + +D  GL 
Sbjct: 141 YRIQKLSGE-----------------RVSNVVVMGTGEPLDNYENLLQFIRLLTDENGLH 183

Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            S+R +T+ST G VP +  + EE + + LAISLHA + + R  L+PI  KY +E +++AC
Sbjct: 184 ISQRNLTVSTCGIVPKMYALAEENLQITLAISLHASNQEKRAELMPIANKYSIEEVLEAC 243

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R+Y      RR+TFEY ++ G ND+  DA  L +++KG+   +NLIP NP    +Y+ SD
Sbjct: 244 RNYFE-KTGRRLTFEYSLVGGKNDTKEDAEELARLIKGLNCHVNLIPVNPIKERDYVQSD 302

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +K I  F   +++   +  IR   G DI  ACGQL+
Sbjct: 303 KKVIENFKNKLEKYQINVTIRREMGRDIDGACGQLR 338


>gi|307153286|ref|YP_003888670.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7822]
 gi|306983514|gb|ADN15395.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7822]
          Length = 350

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 126/360 (35%), Positives = 194/360 (53%), Gaps = 31/360 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   +EL E + + G P      R  Q+++W+Y +G R    +S   +  R  + + +
Sbjct: 18  LLGKSLQELTEWVQEQGQPA----YRGKQLYQWLYEKGARSLSDISVFPKSWREEV-KDY 72

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I   +I    I+ D TRK+LLR     I     IETV IP + R T+CVSSQVGC + C
Sbjct: 73  PIGRSQIHHRSIAPDKTRKYLLRLQDGLI-----IETVGIPTEKRLTVCVSSQVGCPMDC 127

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNL   EI+ QVL  +         ED +        R++S++V MGMG
Sbjct: 128 DFCATGKGGFTRNLAPHEIVDQVLTVQ---------EDFQ--------RRVSHVVFMGMG 170

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVS 247
           EPL N   V  +++I +  +G+    R +T+ST G    I ++   ++ V  A+SLHA +
Sbjct: 171 EPLLNLKAVVSAVNILNQDVGIGM--RSLTISTVGLPAKIEQLARHQLQVTFAVSLHAPN 228

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  + YPL+ L++ C  Y  ++  RR+TFEY++L G+ND P  A  L   ++
Sbjct: 229 QALREQLIPSAKHYPLKNLLEDCHKYVEMTK-RRVTFEYILLAGVNDLPEQAQELAVQIR 287

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP    +Y   + + I  F   +++   +  +R  RGL+  AACGQL++
Sbjct: 288 GFQSHVNLIPYNPISEADYKRPNSQRINAFLNILQQENIAVSVRYSRGLETDAACGQLRA 347


>gi|205829720|sp|Q6MDD0|RLMN2_PARUW RecName: Full=Ribosomal RNA large subunit methyltransferase N 2;
           AltName: Full=23S rRNA m2A2503 methyltransferase 2
          Length = 358

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 190/353 (53%), Gaps = 24/353 (6%)

Query: 14  REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73
            ++L E L   G  + H +    QI  WIY +G+  +  MS++SQ +R  L +H  +   
Sbjct: 8   HQKLVEWLKAHGEKEFHAK----QILSWIYQKGVLSWDKMSNLSQSLREKLAKHIRLPVL 63

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           E+V    S D   +  ++F  R   G + +E+V I    R T+CVSSQVGC   C+FC +
Sbjct: 64  ELVRYTESID---QETIKFLWRLRDGNL-VESVLILSGIRRTVCVSSQVGCPAKCAFCAS 119

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G Q   RNL   EI+ Q+L   + L               S G K+S++V MGMGEPL N
Sbjct: 120 GQQGFFRNLRPTEIIEQILQINAWLS--------------SKGEKVSHVVYMGMGEPLKN 165

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
           +++V  S+ + S     + S+RRIT+ST G V  I R+ +E + V L +SLHA +  +R 
Sbjct: 166 YESVVASIRVLSHPDFCNISQRRITVSTVGVVEGIKRLSKEGLKVNLVLSLHAPNQHIRK 225

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            ++P  RKYPLE ++++   Y      R ITFEY +L GIND P  A  L  +LKG    
Sbjct: 226 KIIPYARKYPLEEILESMDEY-AQKTKRDITFEYTLLAGINDHPDHAHELAHLLKGKQCT 284

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +NLIP+NP PG      ++K I  F   +  S   +  R  +G DI AACGQL
Sbjct: 285 VNLIPYNPIPGLRLKRPEKKAIKQFRSVLYGSHIVNTCRYTKGDDIGAACGQL 337


>gi|312130260|ref|YP_003997600.1| 23S rRNA m(2)a-2503 methyltransferase [Leadbetterella byssophila
           DSM 17132]
 gi|311906806|gb|ADQ17247.1| 23S rRNA m(2)A-2503 methyltransferase [Leadbetterella byssophila
           DSM 17132]
          Length = 368

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 200/362 (55%), Gaps = 24/362 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK+ L  +  E+L+  L ++G P      R  QI +W++ +     Q M+++S+ +R  L
Sbjct: 25  KKKDLRKVKWEDLQAWLKQVGEPA----FRAKQIREWLWQKSAWSIQDMTNLSKSLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              F I    +   + S DGT    ++   +   G + +E V IP  +R T C+SSQVGC
Sbjct: 81  EAEFEIRPVTVHTAQYSADGT----IKSGFKLYDGHL-VEGVLIPTDTRMTACISSQVGC 135

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SLTC FC TG     RNL A EI  QV+L             I+        + ++NIV 
Sbjct: 136 SLTCKFCATGYMNRERNLDAAEIYDQVIL-------------IKNQAEERYSQPLTNIVY 182

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N+  V +S+   +   GL++S +RIT+ST+G    I ++G++ +   LA+SL
Sbjct: 183 MGMGEPLLNYAAVLESVERITSPEGLNWSPKRITVSTAGIAKMIKKLGDDGVKFNLALSL 242

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++ RN ++PIN    L+ L +A +++       +IT EY++  G ND   DA  L+
Sbjct: 243 HAANDEKRNTIMPINESNSLKNLSEALQYFYK-KTGNKITLEYIVFHGFNDKIADAKELL 301

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + +K +P+K+N+I +NP     ++ +D + I  F++ ++ +  +  IR  RG DI AACG
Sbjct: 302 EFVKRVPSKVNIIEYNPISEANFVNADPEAIDKFAKYLEDNRVTVNIRRSRGKDIDAACG 361

Query: 364 QL 365
           QL
Sbjct: 362 QL 363


>gi|262066381|ref|ZP_06025993.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC
           33693]
 gi|291379946|gb|EFE87464.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC
           33693]
          Length = 358

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 205/376 (54%), Gaps = 33/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +++ + +EEL E L+ +G+ + + +    +++ W++ + IR+F  M+++S + R +L
Sbjct: 4   EKINILNLTQEELTEFLVSLGLKKFYGK----EVFIWLHKKIIRNFDDMTNLSLKDREIL 59

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117
            ++  I +  ++  ++S  D T K+L     +       IETV +  +       R TLC
Sbjct: 60  KENAYIPFFNLLKHQVSKLDKTEKFLFELEDKGT-----IETVLLRHRDSKNKEIRNTLC 114

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC + CSFC TG    +RNL+  EIL QV      L                   
Sbjct: 115 VSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVERRL--------------RKKDE 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            ++N+V MGMGEPL N DN+  +LSI S+  G++ SKR+IT+STSG VP I ++  E+I 
Sbjct: 161 SLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKITISTSGVVPGIEKILLEKIP 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LA+SLH+  N+ R+ ++PIN+ +PLE L      Y   +  RRITFEY+++   N S 
Sbjct: 221 IELAVSLHSAINEKRDQIIPINKNFPLEDLSAVLVEYQKQT-KRRITFEYILIDNFNISE 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
            DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R  +G
Sbjct: 280 VDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSMKKIERFYNYLKNVRKVNVTLRQEKG 339

Query: 356 LDILAACGQLKSLSKR 371
            DI  ACGQL+  +K+
Sbjct: 340 SDIDGACGQLRQRNKK 355


>gi|223940814|ref|ZP_03632646.1| radical SAM enzyme, Cfr family [bacterium Ellin514]
 gi|223890519|gb|EEF57048.1| radical SAM enzyme, Cfr family [bacterium Ellin514]
          Length = 378

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 204/375 (54%), Gaps = 32/375 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL+    ++  P      R  Q+ +W+YV  +  +  M+++ + +R +L + F++   E
Sbjct: 11  EELQARFKELNQPG----YRVGQLLEWLYVHRVASWDAMTNLPKGLREVLQKEFTLQTLE 66

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--------SRGTLCVSSQVGCSL 126
           +V  + S D T+K+L +     +     IE+V IP           R TLCVS+QVGC+ 
Sbjct: 67  LVRRQGSRDTTQKFLWKLNDGAM-----IESVLIPANPALYGEASDRHTLCVSTQVGCAY 121

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS---------VGR 177
            C FC +G +   RNL  EEI+ Q+L     +  +   E+ +G   P          V R
Sbjct: 122 GCKFCASGLEGWKRNLRVEEIVEQILA----IERWNAAEEAKGSKPPEANPKPKTTEVTR 177

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
            I+N+V+MGMGEPL N++N+ K+L I +   G     R+IT+STSG  P I ++ ++ + 
Sbjct: 178 FINNLVIMGMGEPLANYENLLKALRILNAPWGGGIGARKITISTSGLAPQIRKLADDPLQ 237

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LAISLH  ++++RN ++P+N+KYPL+ L  AC +Y    + R ITFEY+++ G+ND  
Sbjct: 238 FRLAISLHGATDEVRNKIMPVNKKYPLKELTAACEYYQQKKD-RMITFEYILIAGVNDGL 296

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
                L ++   + AK+NLIP+N      +    +     F   +++    + +R  +G 
Sbjct: 297 DQVKPLAQLAHRLNAKVNLIPYNKVEDLTWERPTEAAQEAFLATLEKERVVATLRREKGH 356

Query: 357 DILAACGQLKSLSKR 371
           DI AACGQL+  ++R
Sbjct: 357 DIDAACGQLRLKTER 371


>gi|332653341|ref|ZP_08419086.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16]
 gi|332518487|gb|EGJ48090.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16]
          Length = 352

 Score =  208 bits (530), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 131/357 (36%), Positives = 195/357 (54%), Gaps = 32/357 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  EEL   L   G P      R  QI++WIY RG+  F  M+D+S+ +R  L +   + 
Sbjct: 1   MTLEELTAWLKSQGEPG----FRAKQIFRWIY-RGVTSFDEMTDLSKSLREKLKETCFLT 55

Query: 72  YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
            P++  +++S  DGT K+L       +G    IETV +  K   T+CVSSQVGC + C+F
Sbjct: 56  VPKVARKQVSQLDGTIKYLWE-----LGDGNCIETVLMRYKHGNTVCVSSQVGCRMGCAF 110

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +     VRNLT  E++ QVL  +                    G  ISNIV+MG+GEP
Sbjct: 111 CASTLAGKVRNLTPAEMVDQVLFTQL-----------------DSGAPISNIVLMGIGEP 153

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
           L N+D V K L++ +   GL+   R I+LST G V  I ++ +  + + L++SLHA  ++
Sbjct: 154 LDNYDTVMKFLTLVNHPEGLNIGMRHISLSTCGLVDQIDKLAQRGLQLTLSVSLHAPDDE 213

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R+ ++P+NR   +E L+D CR Y   +  RRI++EY M+ G+NDS R A  L  +LKG+
Sbjct: 214 TRSKIMPVNRAVGVERLMDTCRRYFE-TTGRRISYEYAMIDGVNDSDRQADLLAGLLKGM 272

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           P  +NLIP N     E      + +  F + ++  G +  +R   G DI A+CGQL+
Sbjct: 273 PGHVNLIPLNDVE--ESPLKPSRRVAAFQKRLESHGVTVTVRRRLGSDIDASCGQLR 327


>gi|323701797|ref|ZP_08113468.1| radical SAM enzyme, Cfr family [Desulfotomaculum nigrificans DSM
           574]
 gi|323533333|gb|EGB23201.1| radical SAM enzyme, Cfr family [Desulfotomaculum nigrificans DSM
           574]
          Length = 352

 Score =  208 bits (530), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 127/336 (37%), Positives = 187/336 (55%), Gaps = 25/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLR 91
            R  QI +W+  +G+  F  M++IS+E++  L     I   +++  + S  G T K+LL 
Sbjct: 31  FRAIQICQWVLAKGVTSFDQMTNISKELQAKLADVAYISQTKMLARQQSARGDTIKYLL- 89

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +     +E V +      + CVS+QVGC + C FC +  + LVR+LT  EI  QV
Sbjct: 90  ----GLADGHAVECVLMKHSYGNSACVSTQVGCRMGCMFCASTIEGLVRSLTPGEIYDQV 145

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L                  +    G ++S+IV+MG GEPL N+DNV K L   +   GL+
Sbjct: 146 L-----------------GIQQDTGERVSHIVIMGSGEPLDNYDNVIKFLENVNADYGLN 188

Query: 212 FSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
              R ITLST G VP + ++  +++ + LA+SLHA +++LRN LVPINR+Y L  LI AC
Sbjct: 189 IGYRHITLSTCGLVPKLKQLAFKKLPITLAVSLHAPNDELRNQLVPINRRYSLAELIPAC 248

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R Y  ++  RRITFEY +LK INDS   A  L+ +LKG+   +NLIP NP     +  + 
Sbjct: 249 REYTEIT-GRRITFEYALLKEINDSEEHARQLVNLLKGMLCHVNLIPANPVEEKGFERTP 307

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            + +  F   I+++G +  +R   G DI AACGQL+
Sbjct: 308 PEKVERFRNIIEKAGLAVTVRRELGTDIDAACGQLR 343


>gi|310828893|ref|YP_003961250.1| hypothetical protein ELI_3325 [Eubacterium limosum KIST612]
 gi|308740627|gb|ADO38287.1| hypothetical protein ELI_3325 [Eubacterium limosum KIST612]
          Length = 340

 Score =  208 bits (530), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 126/337 (37%), Positives = 187/337 (55%), Gaps = 29/337 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91
            R  Q+++W+Y +        +++S+ +R  L  H++I +  I   ++   DGTRK+L+R
Sbjct: 24  FRGKQLYQWLYEKKAAQLDDCTNLSKNLREKLKSHYNIEHGSIEKTQEDPEDGTRKYLIR 83

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
            P         IETV +      +LCVSSQVGC + C+FC +     +R+L A EIL Q+
Sbjct: 84  LP-----DGNSIETVLMSYHHGYSLCVSSQVGCRMGCAFCASTKGGKIRDLEAGEILDQI 138

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            L                 V    G +ISN+V+MG+GEPL N+DN+ K L+IA++  G+ 
Sbjct: 139 YL-----------------VEQEAGIRISNVVIMGIGEPLDNYDNILKFLNIANEGWGIG 181

Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
             +R+ITLST G VP I  + E ++ + LAISLH+   + R  L+P+ +KY +E L+  C
Sbjct: 182 --QRKITLSTCGLVPQIEALAELDLQINLAISLHSPFQERRETLMPVAKKYRIEELLKVC 239

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
            +Y      RRITFEY ++ G ND P D   L +IL  +P  INLI  NP     Y  S 
Sbjct: 240 NNYF-TKTKRRITFEYALIDGFNDRPEDVAELAEILGKMPCHINLIGLNPVTESAYKGS- 297

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +++  FS  +K+ G +  IR   G +I AACGQL+ 
Sbjct: 298 -RNVNFFSNELKKRGITCTIRRKIGDNIDAACGQLRQ 333


>gi|322380339|ref|ZP_08054550.1| Fe-S cluster redox enzyme [Helicobacter suis HS5]
 gi|321147246|gb|EFX41935.1| Fe-S cluster redox enzyme [Helicobacter suis HS5]
          Length = 383

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/352 (36%), Positives = 195/352 (55%), Gaps = 34/352 (9%)

Query: 35  TSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPA 94
             QI+ W+Y R    F  M ++ + ++  L + F I   +++ ++ S D + K L     
Sbjct: 49  AKQIFAWLYQRYATSFDQMHNLPKSLKTTLQRDFCIQNLKLLVKECSQDKSEKCLF---- 104

Query: 95  RCIGGPVEIETVYI--PEKSRG-----------TLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                    E+V++   EK  G           T C+SSQ+GC + C FC T     VRN
Sbjct: 105 -ATHDQHSFESVFMVMKEKQIGDKGQILAQEKLTFCLSSQIGCKVGCVFCATAKGGFVRN 163

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ QV+  + +       E  +G+          N+V MGMGEPL NF+ V +SL
Sbjct: 164 LKAGEIVEQVVALKRM----HSLEPTKGI----------NLVFMGMGEPLHNFEQVVRSL 209

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRK 260
            I S   GL+ S RRITLSTSG VP +  +G   +GV LAISLHAV+++LR+ L+PIN+ 
Sbjct: 210 KILSHPHGLNISPRRITLSTSGVVPMMDILGALNLGVQLAISLHAVNDELRSKLMPINKT 269

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y ++ LI A R +P +   +R+ FEY+++K  ND    A  L+++L G+ +KINLIP+NP
Sbjct: 270 YNIQELIKAARRFP-IDARKRLMFEYLVIKDYNDGLEHAKALLRLLNGLRSKINLIPYNP 328

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
               ++   D + +  F++ + + G    +R  +GLDI AACGQL+  ++ I
Sbjct: 329 TTHSKFERPDLEKVKQFADFLNQRGLLCTMRLSKGLDISAACGQLREKTRGI 380


>gi|328475785|gb|EGF46521.1| ribosomal RNA large subunit methyltransferase N [Listeria
           monocytogenes 220]
          Length = 357

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 202/346 (58%), Gaps = 30/346 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  +F  + +  ++V E  S DGT K+L +     +     IETV + ++   ++CV++Q
Sbjct: 57  LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  K  R+LTA EI+ Q++  +  L D    E+           ++S+
Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
           +V+MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LA
Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N RRITFEY+MLKG+ND  ++AL
Sbjct: 218 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHKKEAL 276

Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKR 343
            L  +L      A +NLIP+NP     +Y  S ++D++ F + +K+
Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKK 322


>gi|228470999|ref|ZP_04055844.1| radical SAM enzyme, Cfr family [Porphyromonas uenonis 60-3]
 gi|228307396|gb|EEK16410.1| radical SAM enzyme, Cfr family [Porphyromonas uenonis 60-3]
          Length = 341

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 194/365 (53%), Gaps = 30/365 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             ++G    +L E  + +G+P+   R    QI  W+Y + +  +  M+++S++ R LL  
Sbjct: 5   HQILGKTPAQLTELAVGLGLPKYTGR----QIADWLYQKHVSSWDEMTNLSKKARALLAS 60

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           H+ I       ++ S DGT K+L  F A   GG   +ETV IPE  R TLCVSSQ GC +
Sbjct: 61  HYEIGRAAPHLQQTSRDGTVKYL--FAA---GGGF-VETVMIPEGDRATLCVSSQRGCKM 114

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q    NL+  EIL Q+L                   +P V  +++NIV MG
Sbjct: 115 NCLFCMTGKQGFGANLSTSEILNQIL------------------SVPEVN-ELTNIVFMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEP+ N D + + ++  +D  GL+ S +RIT+ST G  P + R  EE    LAISLH  
Sbjct: 156 MGEPMDNIDTLLQVITCLTDPQGLAMSPKRITVSTIGLRPGLERFLEECTCHLAISLHNP 215

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++ R  ++P+ R  PL   +   RHY   S  RR+TFEY++  G+ND+PR    L ++L
Sbjct: 216 LSEERLSIMPVERAMPLADTVALLRHY-DWSRQRRLTFEYIVFSGLNDTPRHLAALKRLL 274

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             +   +NLI ++  P  +   SD   +    + +  +G  + IRT RG DI AACG L 
Sbjct: 275 AQLDCHVNLIRYHRIPHIDLPSSDMTRMEWLRDWLCEAGIPTTIRTSRGEDISAACGMLS 334

Query: 367 SLSKR 371
           +  ++
Sbjct: 335 TQEQQ 339


>gi|288803681|ref|ZP_06409111.1| radical SAM enzyme, Cfr family [Prevotella melaninogenica D18]
 gi|288333921|gb|EFC72366.1| radical SAM enzyme, Cfr family [Prevotella melaninogenica D18]
          Length = 350

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 194/365 (53%), Gaps = 29/365 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+GM   EL+E    +G+P         QI KW+Y + ++    M++IS+  R  L 
Sbjct: 5   KKYLLGMTLGELKEVAKSLGMPA----FTGGQIAKWLYTQHVKSIDEMTNISKANREKLA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             ++I   E +D + S DGT K+L  FP     G   +ETVYIP++   TLCVSSQVGC 
Sbjct: 61  AEYAIGCKEPIDAQHSKDGTIKYL--FPTDS--GKF-VETVYIPDEDHATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +L+A +IL Q+                    +P    K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLSATDILNQIY------------------SLPERD-KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DNV ++  I +   G  +S +RIT+S+ G    + R  +E    +AIS+H 
Sbjct: 157 GQGEPMDNLDNVLRTTEIMTADFGYGWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R+ L+P  +   ++ +I+   +Y   S+ RR++FEY++ K  NDS   A  ++++
Sbjct: 217 PLHEQRSELMPAEKGMSIDSIIELLSNYD-FSHQRRLSFEYIVFKDFNDSEEHAKAIVQL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+  ++NLI F+P P       D   +  F   + + G  + IR  RG DI AACG L
Sbjct: 276 LKGLDCRMNLIRFHPIPNIPLQGVDDHRMEKFRNYLTQHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSK 370
            +  K
Sbjct: 336 STAKK 340


>gi|322379396|ref|ZP_08053767.1| Predicted Fe-S-cluster redox enzyme [Helicobacter suis HS1]
 gi|321148214|gb|EFX42743.1| Predicted Fe-S-cluster redox enzyme [Helicobacter suis HS1]
          Length = 383

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/352 (36%), Positives = 195/352 (55%), Gaps = 34/352 (9%)

Query: 35  TSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPA 94
             QI+ W+Y R    F  M ++ + ++  L + F I   +++ ++ S D + K L     
Sbjct: 49  AKQIFAWLYQRYATSFDQMHNLPKSLKTTLQRDFCIQNLKLLVKECSQDKSEKCLF---- 104

Query: 95  RCIGGPVEIETVYI--PEKSRG-----------TLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                    E+V++   EK  G           T C+SSQ+GC + C FC T     VRN
Sbjct: 105 -ATHDQHSFESVFMVMKEKQIGDKGQILAQEKLTFCLSSQIGCKVGCVFCATAKGGFVRN 163

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ QV+  + +       E  +G+          N+V MGMGEPL NF+ V +SL
Sbjct: 164 LKAGEIVEQVVALKRM----HSLEPTKGI----------NLVFMGMGEPLHNFEQVVRSL 209

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRK 260
            I S   GL+ S RRITLSTSG VP +  +G   +GV LAISLHAV+++LR+ L+PIN+ 
Sbjct: 210 KILSHPHGLNISPRRITLSTSGVVPMMDILGALNLGVQLAISLHAVNDELRSKLMPINKT 269

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y ++ LI A R +P +   +R+ FEY+++K  ND    A  L+++L G+ +KINLIP+NP
Sbjct: 270 YNIQELIKAARRFP-IDARKRLMFEYLVIKDYNDGLEHAKALLRLLNGLRSKINLIPYNP 328

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
               ++   D + +  F++ + + G    +R  +GLDI AACGQL+  ++ I
Sbjct: 329 TTHSKFERPDLEKVKQFADFLNQRGLLCTMRLSKGLDISAACGQLREKTRGI 380


>gi|168015505|ref|XP_001760291.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688671|gb|EDQ75047.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 433

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/386 (35%), Positives = 206/386 (53%), Gaps = 35/386 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVRH 62
           +K SL  M   ELE  +   G    H   R + +W+ +Y  G  +     +  +++E   
Sbjct: 71  RKVSLKDMTFPELERWVESHG----HKASRAAMLWRHLYGNGKWVESPAVIPRLNKEFVS 126

Query: 63  LLNQHFSII-YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSS 120
           LL +        ++ D   + DGTRK  L F     G  VE  TV IP  + R T+CVSS
Sbjct: 127 LLEERAEFAPNLQLRDVHTARDGTRK--LVFFLEEYGASVE--TVVIPGPRGRVTVCVSS 182

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q+GC++ C FC+T    L  NL+  +I+ Q+++A  ++    G               ++
Sbjct: 183 QIGCAMNCQFCFTAKMGLRGNLSTAQIVEQLVVASRIVSKDLG--------------HVT 228

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V MGMGEPL N D+V ++  I  +  GL  S R++T+STSG VP I +        LA
Sbjct: 229 NVVFMGMGEPLHNIDSVIRAAEIMVNDKGLHLSPRKVTISTSGLVPQIRKFCRSSECALA 288

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACR-----HYPGLSNARRITFEYVMLKGINDS 295
           +SL+A ++D+R+ ++PINRKY +  L+D  +     H PG S    +  EYVMLK +NDS
Sbjct: 289 VSLNATTDDIRDQIMPINRKYNIRTLLDCVKEEMITHRPGES----VFLEYVMLKNVNDS 344

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
             DA  LI+++K IP KINLI FN  PG  +  +   +++ F + +  +G    IR  RG
Sbjct: 345 EEDATRLIELVKDIPCKINLIMFNSHPGSAFEPTPLVEVLRFRDRVADAGLVVHIRNSRG 404

Query: 356 LDILAACGQLKSLSKRIPKVPRQEMQ 381
            D   ACGQL ++  R P+  +QEMQ
Sbjct: 405 DDEKMACGQLGTVLPRSPRRRKQEMQ 430


>gi|194333982|ref|YP_002015842.1| radical SAM enzyme, Cfr family [Prosthecochloris aestuarii DSM 271]
 gi|254807193|sp|B4S808|RLMN_PROA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|194311800|gb|ACF46195.1| radical SAM enzyme, Cfr family [Prosthecochloris aestuarii DSM 271]
          Length = 359

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/378 (35%), Positives = 204/378 (53%), Gaps = 35/378 (9%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+++    R+ELEE +  IG P    R R +Q+ +W+Y     DF  M+ IS+ +R  L+
Sbjct: 4   KQNIKRYSRKELEELMQSIGEP----RFRAAQLHRWLYSDRASDFHEMTTISKSLRETLD 59

Query: 66  QHF-----SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           + +     S+   + V++  +   TRK+L++     +     +ETV IP + R T+CVS+
Sbjct: 60  RKYFLPQCSMSSTQCVEDSSADSTTRKFLVQ-----LHDQEAVETVLIPAEGRNTVCVST 114

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC L CSFC TG     RNL A EI  QV L +  L D  GC              ++
Sbjct: 115 QVGCPLHCSFCATGYMGFTRNLNAAEIAEQVFLVQDYL-DAIGC------------GAVT 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSM-GLSFSKRRITLSTSGFVPNI---ARVGEEIG 236
           NIV MGMGEPL   + V +S+ I SD+   L  S+++ITLST G +P I   AR G  + 
Sbjct: 162 NIVYMGMGEPLLALEEVIESVGILSDTTYRLHISQKKITLSTVGLLPEIGMLARSG--LT 219

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LAISLH+   + R  L+P  R YPL+ L      Y      + +T  Y++LK IND+ 
Sbjct: 220 TNLAISLHSADQETRASLMPSARDYPLKELRKTLIQYTS-ETGQPVTLVYMLLKEINDTQ 278

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
            DAL L+++ +    KINLI +NP    ++  + ++    F   +  +G +  +R   G 
Sbjct: 279 EDALKLVRLARSFLCKINLIDYNPIVNIKFDSAGEQRKNIFIRTLVDAGLNVTVRKSHGS 338

Query: 357 DILAACGQLKSLSKRIPK 374
            I AACGQL +++K++P+
Sbjct: 339 SINAACGQL-AINKKLPE 355


>gi|317472521|ref|ZP_07931841.1| cfr family radical SAM enzyme [Anaerostipes sp. 3_2_56FAA]
 gi|316899998|gb|EFV21992.1| cfr family radical SAM enzyme [Anaerostipes sp. 3_2_56FAA]
          Length = 354

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 207/376 (55%), Gaps = 31/376 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L  M  EELE A+ ++G      + R  QI++W + R       M+++ + ++  L + 
Sbjct: 3   DLKSMTLEELELAVKELG----EKKFRAKQIFEWFHKRLASSLDEMNNLPKNLKEKLQEK 58

Query: 68  FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +     + V+  +S  DGTRK+L +     +     IE+V +  K   ++C+SSQ GC +
Sbjct: 59  YEAAELKEVETYVSRIDGTRKYLFQ-----LNDGNMIESVLMKYKHGNSVCISSQAGCRM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +    L RNL   E+L Q+                   +    G ++SN+V+MG
Sbjct: 114 GCRFCASTLGGLDRNLLPSEMLGQIYY-----------------IQKDTGERVSNVVVMG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N++N+ + + + +D  GL+ S+R +T+ST G VP I  + +E + + LAISLHA
Sbjct: 157 TGEPLDNYENLLRFIRLLTDEKGLNLSQRNLTVSTCGLVPKIRELADEKLQMTLAISLHA 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R  L+P+  +Y +E L+ AC++Y   +  RRITFEY ++  +NDSP++A  L + 
Sbjct: 217 SNDEMRKSLMPVANQYSMEDLLAACKYYFDRT-GRRITFEYSLVAEVNDSPQNAKELCRF 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L G P  +NLIP NP    ++  S  + +  F   ++++  +  IR   G DI AACGQL
Sbjct: 276 LGGFPCHVNLIPVNPIKERDFRQSMPEFVNDFKNILEKNRVNVTIRREMGRDINAACGQL 335

Query: 366 KSLSKRIPKVPRQEMQ 381
           +   K++  V +QE++
Sbjct: 336 R--RKKLNSVEKQEIR 349


>gi|81300567|ref|YP_400775.1| ribosomal RNA large subunit methyltransferase N [Synechococcus
           elongatus PCC 7942]
 gi|123769224|sp|Q31MD1|RLMN_SYNE7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81169448|gb|ABB57788.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 361

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 197/366 (53%), Gaps = 37/366 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    EL++ ++  G P      R  Q+++W+Y R I +   +S   +  R  L Q  
Sbjct: 17  LLGRSLPELQDWVVAQGQPS----YRAKQLYQWLYERSIHNLAEISVFPKAWRQSL-QAV 71

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            +   +IVD  +S  GT K+LLR     I     IE V IP   R T+CVSSQ+GC++ C
Sbjct: 72  PVGRSQIVDRSVSPSGTIKYLLRLHDGEI-----IEAVGIPSGDRLTVCVSSQLGCAMAC 126

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     R+L   EI+ QVL  +         ED +        +++SNIV MGMG
Sbjct: 127 DFCATGKGGFRRHLAPHEIIDQVLTVQ---------EDWQ--------QRVSNIVFMGMG 169

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IGVMLAI 241
           EPL N D V  ++   +  +G+   +R IT+ST G   +I R+ E        +   LA+
Sbjct: 170 EPLLNLDAVLAAIRCLNQDIGIG--QRGITVSTVGIPGHIRRLAETKRVGDRPLQFTLAV 227

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +  +R+ L+P +R YP+  L+  CR Y  ++  RR+TFEY++L G+ND P  A  
Sbjct: 228 SLHAPNQAIRDRLIPSSRHYPITDLLQECRDYVQIT-GRRVTFEYILLAGLNDQPEQAEQ 286

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++L+G  + +NLIP+NP    EY    +  +  F++ +++   +  +R  +GL   AA
Sbjct: 287 LAQLLRGFQSHVNLIPYNPIDEVEYQRPSKARVDAFADALRQQRVAVTVRWSKGLGADAA 346

Query: 362 CGQLKS 367
           CGQL++
Sbjct: 347 CGQLRA 352


>gi|34763242|ref|ZP_00144204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27887095|gb|EAA24204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 358

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 205/376 (54%), Gaps = 33/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +++ + +EEL E L+ +G+ + + +    +++ W++ +  R F  M+++S + R +L
Sbjct: 4   EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117
            +   I +  ++  ++S  D T K+L        GG   IETV +  K       R TLC
Sbjct: 60  KEKTYIPFFNLLKYQVSKIDKTEKFLFELED---GGT--IETVLLRHKDSKNREIRNTLC 114

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC + CSFC TG    +RNL+  EIL Q+ +    L                 G 
Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYIVERRL--------------RKKGE 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            ++N+V MGMGEPL N DN+ KSLSI S+  G++ SKR+IT+STSG V  I ++  ++I 
Sbjct: 161 TLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILLDKIP 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LAISLH+  N+ R+ ++P+N+ +PLE L      Y   +  RRITFEY+++   N S 
Sbjct: 221 IELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQT-KRRITFEYILIDNFNISE 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
            DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R  +G
Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNIRKVNVTLRQEKG 339

Query: 356 LDILAACGQLKSLSKR 371
            DI  ACGQL+  +K+
Sbjct: 340 SDIDGACGQLRQRNKK 355


>gi|109946741|ref|YP_663969.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           acinonychis str. Sheeba]
 gi|123362803|sp|Q17ZF6|RLMN_HELAH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|109713962|emb|CAJ98970.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 353

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/346 (36%), Positives = 191/346 (55%), Gaps = 29/346 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F +   EI     S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIASLEQEFVLRTIEITHVSHSVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLKDNHTFEAVFLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I  + E+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAEKNLGVQLAISLHAVDDKTRSSLIPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  + +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVKKWP-LEQRKRVMFEYLLIKNLNDSLNCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             G ++     +    F++ +   G    IR  + LDI AACGQL+
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349


>gi|15805960|ref|NP_294660.1| ribosomal RNA large subunit methyltransferase N [Deinococcus
           radiodurans R1]
 gi|81624900|sp|Q9RVT6|RLMN_DEIRA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|6458660|gb|AAF10513.1|AE001946_5 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 346

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 175/335 (52%), Gaps = 22/335 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++V+G+  F  M+++   +R  L   + +     ++   S DG+ K+L   
Sbjct: 17  FRRKQLLEWVFVQGVGTFDAMTNLPAGLRAELESEYQLNPFRDIETVRSHDGSVKYLF-- 74

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +    ++E VY+P   R T+CVS+ VGC   C+FC TG     RNLT  EI+ QVL
Sbjct: 75  ---TLNDGRQMEAVYMPYLDRKTICVSTMVGCPARCAFCATGKMGFGRNLTPGEIVGQVL 131

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                 G  P              R+I N+V MGMGE L N++N   +  +      L  
Sbjct: 132 AVAGGEGISP--------------REIRNLVFMGMGEALLNYENSMAAARVLLHPDALGM 177

Query: 213 SKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
           SKRR+TLST G    I R+ EE  +G+ LAISLHA   + R  ++P      +E ++ A 
Sbjct: 178 SKRRVTLSTVGIAKGIRRLAEEDDLGIKLAISLHAPDEETRQQIIPTGAANSIEEIMAAA 237

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R Y  ++  RR+T EY ML+G+ND    A  L   L G+ + +NLIP NPW G +++ S 
Sbjct: 238 RDYQAVT-GRRVTMEYTMLRGVNDHLWQAELLADRLDGLVSHVNLIPMNPWDGSDFVSSS 296

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++ I  F + ++  G    +R  RG D  AACGQL
Sbjct: 297 EEQIQAFYDALQDRGVDVSVRRSRGKDAGAACGQL 331


>gi|298735612|ref|YP_003728137.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori B8]
 gi|298354801|emb|CBI65673.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori B8]
          Length = 357

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 196/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L + F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEIAHVRKSVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  + E  + T+CVS Q+GC + CSFC+T     VRN
Sbjct: 81  SLKDNHTFEAVLLKMKDKKIDGETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKAFNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  R +P L   +R+ FEY+++K +ND    A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDGLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|327441109|dbj|BAK17474.1| predicted Fe-S-cluster redox enzyme [Solibacillus silvestris
           StLB046]
          Length = 382

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/336 (34%), Positives = 188/336 (55%), Gaps = 21/336 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y + ++ F+ MS++ + +R  L   F++     + ++ S DGT K+L + 
Sbjct: 59  FRAAQIYEWLYEKRVQTFEEMSNLPKALREKLEAEFALTTLSTIIKQESKDGTIKFLFQ- 117

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +      ++CV++QVGC + C+FC +    L R+L A EI+ QV+
Sbjct: 118 ----LQDGYSIETVLMRHDYGNSICVTTQVGCRIGCTFCASTLGGLKRHLMAGEIVEQVV 173

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S+IV+MG+GEP  N+D +   L I +D  GL+ 
Sbjct: 174 KVQQQLDE--------------TEERVSSIVIMGIGEPFDNYDAMMNFLKIMNDDKGLNI 219

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG VP I    +E + +  A+SLHA + + R  L+PI + Y LE L++A +
Sbjct: 220 GARHITVSTSGIVPKIYEFADEGMQINFAVSLHAPNQEARQKLMPIAKAYKLEELMEAVK 279

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RR+TFEY ++ G ND+   A+ L K++K I   +NLIP N  P  +Y+ + +
Sbjct: 280 YYTK-KTGRRVTFEYGLMSGQNDTEEVAMELAKLIKNIKCHVNLIPINYVPERDYIRTSR 338

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             I  F   +K  G +  IR  +G DI AACGQL++
Sbjct: 339 SKIFAFERTLKEQGINVTIRREQGADIAAACGQLRA 374


>gi|302341935|ref|YP_003806464.1| radical SAM enzyme, Cfr family [Desulfarculus baarsii DSM 2075]
 gi|301638548|gb|ADK83870.1| radical SAM enzyme, Cfr family [Desulfarculus baarsii DSM 2075]
          Length = 359

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 185/363 (50%), Gaps = 29/363 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  L  +  E+L   L  +G        R  Q+ +W++  G+ D   M+ +S+ +R  L
Sbjct: 3   QKPDLRDLTAEQLARLLADLG----EKPFRARQVSQWLHGHGVDDIADMTSLSKALRAKL 58

Query: 65  NQ--HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +     + + P  V +  S DGTRK L       +     IE+V +PE    TLCVS+QV
Sbjct: 59  SAVGRLTAMGPAKVLQ--SADGTRKLLF-----LLEDGQAIESVLMPEDGHHTLCVSTQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC   C FC T +  L RNL   EIL QVL AR L  +F               R ++N+
Sbjct: 112 GCRQGCRFCATASLGLRRNLRPAEILGQVLAARRLCDEF---------------RPLTNL 156

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N DNV  +L       GL  S+RR+T+ST G V  +  +       LAIS
Sbjct: 157 VFMGMGEPLDNLDNVIVALGHILGEHGLQMSQRRVTVSTVGLVDRLPLLAAASPCALAIS 216

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+A +  +R  ++P+ +++ LE L  A   YP L   RR+T EYV+L G+ND P  A  L
Sbjct: 217 LNAPNEHIRRQIMPVTKRFGLEALRRAIVDYP-LKPTRRVTLEYVLLGGVNDRPEHAREL 275

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +  KG+P K+NLI FNP     +   +   +  F   +     ++ +R  RG DI AAC
Sbjct: 276 ARWAKGLPVKVNLIAFNPHQAGPFQAPEAAAVEEFQNVLIEGHVTALLRRSRGQDIAAAC 335

Query: 363 GQL 365
           GQL
Sbjct: 336 GQL 338


>gi|237739801|ref|ZP_04570282.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
 gi|229423409|gb|EEO38456.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
          Length = 358

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 204/376 (54%), Gaps = 33/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +++ + +EEL E L+ +G+ + + +    +++ W++ + IR+F  M+++S + R +L
Sbjct: 4   EKVNILNLTQEELTEFLVSLGLKKFYGK----EVFIWLHKKIIRNFDDMTNLSLKDREIL 59

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117
            ++  I +  ++  ++S  D T K+L     +       IETV +  +       R TLC
Sbjct: 60  KENAYIPFFNLLKHQVSKLDKTEKFLFELEDKGT-----IETVLLRHRDSKNKEIRNTLC 114

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC + CSFC TG    +RNL+  EIL QV      L                   
Sbjct: 115 VSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVERRL--------------RKKDE 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            ++N+V MGMGEPL N DN+  +LSI S+  G++ SKR+IT+STSG V  I ++  E+I 
Sbjct: 161 SLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKITISTSGIVSGIEKILLEKIP 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LA+SLH+  ND R+ ++PIN+ +PLE L      Y   +  RRITFEY+++   N S 
Sbjct: 221 IELAVSLHSAINDKRDQIIPINKNFPLEDLSAVLVEYQKQT-KRRITFEYILIDNFNISE 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
            DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R  +G
Sbjct: 280 ADANALADFIHQFDHVVNLIPYNEVEGVEHKRPSMKKIDRFYNYLKNVRKVNVTLRQEKG 339

Query: 356 LDILAACGQLKSLSKR 371
            DI  ACGQL+  +K+
Sbjct: 340 SDIDGACGQLRQRNKK 355


>gi|260654398|ref|ZP_05859888.1| radical SAM enzyme, Cfr family [Jonquetella anthropi E3_33 E1]
 gi|260631031|gb|EEX49225.1| radical SAM enzyme, Cfr family [Jonquetella anthropi E3_33 E1]
          Length = 352

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 191/339 (56%), Gaps = 27/339 (7%)

Query: 35  TSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPA 94
             QI +WIY + + D+ GM+++S+++R  L +  SI+ P +V+ +IS DGT+K+L     
Sbjct: 30  ADQICQWIYQKKVFDWNGMTNLSKDLRAALAERVSIVPPVLVERQISADGTKKYLWE--- 86

Query: 95  RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154
             +     +E+V +   +  T C+SSQVGC L C+FC TG     RN+TA EI       
Sbjct: 87  --LSDGARVESVLMDHGNHLTACLSSQVGCPLKCAFCATGRGGFERNMTAGEI------- 137

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
              +G F   E         +G+ I N+V MGMGEPL NF NV++++    +        
Sbjct: 138 ---VGHFLAME-------ADLGKPIGNVVFMGMGEPLLNFVNVERAIRCLLEPKMRGMGV 187

Query: 215 RRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
           R +T+ST+G    I ++ +  +GV L +SLHA +++LR+ L+PIN +YPL  ++DA +++
Sbjct: 188 RHVTISTAGVADGIRKLADSGLGVYLCLSLHAPNDELRSRLMPINERYPLPQVLDALKYW 247

Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP-WPGCEYLCSDQK 332
            G +   R+T EYV++KG+ D P  A  L  +   +   +NLIP+NP  P      + + 
Sbjct: 248 QGKTGV-RLTVEYVLIKGVTDLPELAYELPTLFSDLQTYVNLIPYNPVIPSFSRPSASR- 305

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
            I  F++ ++  G    +R  +G DI AACGQL++   R
Sbjct: 306 -IEPFAKILRELGMEVEVRREKGTDIDAACGQLRAKKDR 343


>gi|160893331|ref|ZP_02074118.1| hypothetical protein CLOL250_00880 [Clostridium sp. L2-50]
 gi|156865023|gb|EDO58454.1| hypothetical protein CLOL250_00880 [Clostridium sp. L2-50]
          Length = 361

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 198/365 (54%), Gaps = 30/365 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE-VRH 62
           +KK  +  MM +EL   +  +G P      R  QI++W++ +GI   + M+++ ++ +  
Sbjct: 15  IKKLDIRSMMFDELAVWVKSVGQPA----FRAKQIFEWVHAKGIAHAEDMTNVPKKLIEE 70

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +  QH   +  E+       DGT K+L R       G V +E+V +  K   ++C+SSQV
Sbjct: 71  IKKQHMYGV-EEVTRLVSKQDGTNKFLFRLQ----DGNV-LESVLMRYKHGNSVCISSQV 124

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L+RNL A E+L Q+     + G+                 ++SNI
Sbjct: 125 GCRMGCRFCASTIGGLIRNLEASEMLDQIYAIERITGE-----------------RVSNI 167

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL N+DN+ + + I +D  G + S+R IT+S+ G VP I R+ +E + +  A+
Sbjct: 168 VVMGTGEPLDNYDNLIRFIRIINDEQGKNISQRNITVSSCGLVPQIKRLADEGLSITFAL 227

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+ +++ R  L+PI  KY +  L+D CR+Y      RR+TFEY ++K  ND+P  A  
Sbjct: 228 SLHSPTDEDRRKLLPIANKYSIAELMDVCRYYFE-KTGRRVTFEYSLVKDENDTPEHAYK 286

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LK +   +NLIP NP    +Y  S    +  F   +++   +  IR   G DI AA
Sbjct: 287 LAELLKNMHGHVNLIPVNPIKERKYCRSLNDSVEKFKYILEKKDINVTIRRSMGRDIDAA 346

Query: 362 CGQLK 366
           CGQL+
Sbjct: 347 CGQLR 351


>gi|298372852|ref|ZP_06982842.1| radical SAM enzyme, Cfr family [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275756|gb|EFI17307.1| radical SAM enzyme, Cfr family [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 342

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 190/364 (52%), Gaps = 30/364 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+S+  +    L+E    + +P+   R    Q+ +WIY +    F+ M++IS++   L
Sbjct: 1   MSKQSITDLNLTRLQEEFASLSLPRYTAR----QVTEWIYKKRSARFEDMTNISKKNLSL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +HF            S DGT+K+L  F  R      +IETV IP+  R TLCVS QVG
Sbjct: 57  LAEHFDTGRQPYSMATTSADGTKKYL--FSTR----HGDIETVMIPDDDRRTLCVSCQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C ++C FC TG      NL+A EI+ QVL                        + I+NIV
Sbjct: 111 CRMSCRFCMTGRCGFAGNLSAGEIINQVLSVDE-------------------AKNITNIV 151

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEP  N   V +++ I +   GL++S +RIT+STSG    I    +     LAISL
Sbjct: 152 FMGMGEPFDNLGEVLRAIEILTSEWGLAYSPKRITVSTSGLRKGIETFLDNTQCHLAISL 211

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H    D R  ++P+     +E ++     Y   ++ RR++FEY++ +GINDS R A  ++
Sbjct: 212 HNPFADERAKMMPVEHSDHIEEVVTLLHRYD-FAHQRRLSFEYIVFEGINDSVRHAEGIV 270

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L+G+  ++NLI F+     +    D+  +  F + + R G  S IR  RG DI AACG
Sbjct: 271 RLLRGLFCRVNLIRFHEVADLDLRSPDKNKMEHFRDYLNRHGIISTIRRSRGEDIEAACG 330

Query: 364 QLKS 367
           QLK+
Sbjct: 331 QLKN 334


>gi|325280884|ref|YP_004253426.1| Ribosomal RNA large subunit methyltransferase N [Odoribacter
           splanchnicus DSM 20712]
 gi|324312693|gb|ADY33246.1| Ribosomal RNA large subunit methyltransferase N [Odoribacter
           splanchnicus DSM 20712]
          Length = 351

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/356 (37%), Positives = 190/356 (53%), Gaps = 25/356 (7%)

Query: 13  MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH--FSI 70
           +REE    L      Q     R  QIW+WI+ RG+ DF  MS++S+  R LL++H  F  
Sbjct: 10  IREESLRDLSDFLTAQGEKAFRAKQIWQWIWQRGVTDFAEMSNLSKATRELLSRHYFFDS 69

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
           ++P+ V  + + DGT K   R     I     +E+V IP   + T+CVSSQVGC L C F
Sbjct: 70  LFPQQV--QTASDGTEKTAWRLTDGEI-----VESVLIPGNQKFTVCVSSQVGCQLGCKF 122

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TGT    RNLTA EI  QV+ A+                  + G+ +SNIV MGMGEP
Sbjct: 123 CATGTLGFKRNLTAGEIFEQVVRAQ--------------QAAEAQGQPLSNIVFMGMGEP 168

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
           L N++ V +++   +   GL+ S  RIT+ST+G    I ++ ++ +   LA+SLHA    
Sbjct: 169 LLNYEQVLRAIERITAQDGLAMSPYRITVSTAGIPEKIRQLADDGVRFNLALSLHAAKET 228

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R  L+P+N+ YPL  +  + +++   +  R  TFEY++LK INDS  DA  L    +  
Sbjct: 229 TRTFLMPVNKAYPLSEIAGSLKYFVEKTGTRP-TFEYLLLKDINDSLEDAKALALYCRQF 287

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           P KIN+I +N   G  +  S  K+   F   ++       +R  +G DI AACGQL
Sbjct: 288 PIKINIIEYNNVEGSGFHHSPDKNRDAFIRFLEGCNMVVNVRRSKGKDIDAACGQL 343


>gi|325108721|ref|YP_004269789.1| 23S rRNA m(2)A-2503 methyltransferase [Planctomyces brasiliensis
           DSM 5305]
 gi|324968989|gb|ADY59767.1| 23S rRNA m(2)A-2503 methyltransferase [Planctomyces brasiliensis
           DSM 5305]
          Length = 358

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/345 (36%), Positives = 185/345 (53%), Gaps = 27/345 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R  QI++WIY R  + ++ M+D+  ++R  L + FS+   E+    ++ D T K LL+
Sbjct: 28  RFRAEQIFRWIYARRAQSWEEMNDLPAKLRTALAEQFSLFNSEVETHSVATDRTEKLLLK 87

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                  G   +E V + E  R T+C+S+QVGC + C FC +G   L RNL   EIL QV
Sbjct: 88  LR----DGEF-VECVLMREPDRNTICISTQVGCGMGCVFCASGLAGLTRNLQTAEILEQV 142

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
                L  D                 K++N+V+MGMGEPL N   +  +L     ++GL+
Sbjct: 143 ARLDRLQSD---------------DEKLTNVVVMGMGEPLANLKQLLPALERMQHALGLN 187

Query: 212 FSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
              RRIT+ST G    I ++        LA+SLHA ++ LR+ +VP+N K  L+ ++ A 
Sbjct: 188 LGVRRITVSTVGLPDRIRQLAAHGKPYNLAVSLHAPNDKLRDEIVPVNDKIGLDAVLSAA 247

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
             Y   +  RR+T+EYV+LKGINDS   A  L ++L G  A +NLIP N         S 
Sbjct: 248 DEYFE-TTGRRVTYEYVLLKGINDSLEHAHELAEVLAGRNAHVNLIPMNAVSLLSIGGSS 306

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
            +    F+  ++++G ++ IR  +G DI AACGQL     R+PKV
Sbjct: 307 PQQARQFAAILEQAGTAATIRKRKGADIDAACGQL-----RLPKV 346


>gi|15895003|ref|NP_348352.1| Fe-S-cluster redox protein [Clostridium acetobutylicum ATCC 824]
 gi|81620134|sp|Q97IC4|RLMN_CLOAB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|15024693|gb|AAK79692.1|AE007682_2 Predicted Fe-S-cluster redox enzyme, YLON B.subtilis ortholog
           [Clostridium acetobutylicum ATCC 824]
 gi|325509140|gb|ADZ20776.1| Fe-S-cluster redox enzyme [Clostridium acetobutylicum EA 2018]
          Length = 345

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 189/362 (52%), Gaps = 30/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+++     EL++ + K G        R  Q + WIY  G  DF+ M ++ Q  R  L +
Sbjct: 2   ENILDYNEAELKQWMDKNG----EKTFRAKQFFDWIY-NGTFDFKDMKNLPQSTRERLEK 56

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  P +V    S  G T K+L R+    I     IE V +      ++C+S+QVGC 
Sbjct: 57  NFYIGMPSVVKRLNSKKGDTVKFLFRYNDGNI-----IECVVMKYDYGNSICISTQVGCR 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +     VR+LT+ EIL Q+L A+                   +G +ISNIV+M
Sbjct: 112 MGCSFCASTIGGRVRDLTSGEILAQILKAQ-----------------KEIGERISNIVLM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLH 244
           G GEPL N+DNV K + I +   GL+  +R ITLST G VP I  +  E + + LAISLH
Sbjct: 155 GSGEPLDNYDNVIKFIRIVNSEKGLNIGQRHITLSTCGIVPRIYDLMKENLQITLAISLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++ R  ++PI  +Y +  +ID C+ Y   +  RRITFEY ++K +ND    A  L +
Sbjct: 215 ASDDETRKKIMPIANRYSISEIIDCCKKYSDFT-GRRITFEYSLVKDVNDDKESAKKLGE 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L G+   +NLIP N      Y   +   I  F + + +    S IR   G DI AACGQ
Sbjct: 274 LLSGMLCHVNLIPVNTVNETSYEKPESSKIKKFCDTLLKYKIESTIRKEMGADINAACGQ 333

Query: 365 LK 366
           L+
Sbjct: 334 LR 335


>gi|89098703|ref|ZP_01171585.1| hypothetical protein B14911_00900 [Bacillus sp. NRRL B-14911]
 gi|89086665|gb|EAR65784.1| hypothetical protein B14911_00900 [Bacillus sp. NRRL B-14911]
          Length = 362

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 194/340 (57%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y + +  F+ M+++S+ +R  LN+ F++   + + ++ S DGT K+L   
Sbjct: 39  FRAAQIFEWLYQKRVASFEDMTNLSKALRDKLNETFTLTTLKTLIQQTSSDGTIKFLFE- 97

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +  +   ++CV++QVGC + C+FC +    L RNL A EI+ QV+
Sbjct: 98  ----LHDGYSIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 153

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S++V+MG+GEP  N+D++   L I +   GL+ 
Sbjct: 154 KVQQALDE--------------TDERVSSVVIMGIGEPFDNYDHMMSFLRIINHDDGLNI 199

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I +  +E + +  A+SLHA + ++R+ L+PINR Y L  L++A R
Sbjct: 200 GARHITVSTSGIIPKIYKFADENMQINFAVSLHAPNTEIRSRLMPINRAYKLPDLMEAIR 259

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RR++FEY +   +ND    A  L  ++KG+   +NLIP N  P  +Y+ + +
Sbjct: 260 YYVD-KTGRRVSFEYGLFGSVNDQVEHAEELASLIKGLKCHVNLIPVNYVPERDYVRTPK 318

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             I  F + +K  G +  IR  +G DI AACGQL++  ++
Sbjct: 319 DQIFAFEKALKNRGVNVTIRREQGHDIDAACGQLRAKERK 358


>gi|116073729|ref|ZP_01470991.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916]
 gi|116069034|gb|EAU74786.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916]
          Length = 346

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 194/372 (52%), Gaps = 39/372 (10%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G    +LE+      + Q     R  Q+  W+Y +G RD  G++ + +  R  L Q 
Sbjct: 4   ALLGRSAADLEQ----WAVAQGQSSFRGRQLHDWLYAKGARDLNGITVLPKVWRAAL-QE 58

Query: 68  FSIIYPEIVDE--KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             ++   + ++   ++ D T K LL            IETV IP   R T+CVSSQVGC 
Sbjct: 59  QGVVVGRLQEQLRSVASDATTKLLL-----GTEDAETIETVGIPTDQRLTVCVSSQVGCP 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L R+L   EI+ QVL  R ++                  R+ S++V M
Sbjct: 114 MACRFCATGKGGLQRSLATHEIVDQVLSIREVMD-----------------RRPSHVVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---VM 238
           GMGEPL N D V +++   +D +G+   +RRIT+ST G    +P +A +  E +G     
Sbjct: 157 GMGEPLLNIDAVLEAIRCFNDDLGIG--QRRITVSTVGVPRTLPKLAELAMERLGRAQFT 214

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA +  LR  L+P    YP E L+D CRHY  ++  RR++FEY++L G+ND P  
Sbjct: 215 LAVSLHAPNQQLREELIPTAHAYPFEALLDDCRHYLAITG-RRVSFEYILLGGLNDHPAH 273

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L   + G  + +NLI +NP    E+     + I  F   ++R G +  +R  RGLD 
Sbjct: 274 AEELADRVGGFQSHVNLIAYNPIEEEEFQRPSAERIAGFRRVLERRGVAVSLRASRGLDQ 333

Query: 359 LAACGQLKSLSK 370
            AACGQL+  +K
Sbjct: 334 NAACGQLRRQNK 345


>gi|163848485|ref|YP_001636529.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526414|ref|YP_002570885.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus sp.
           Y-400-fl]
 gi|205829697|sp|A9WFY6|RLMN_CHLAA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|163669774|gb|ABY36140.1| radical SAM enzyme, Cfr family [Chloroflexus aurantiacus J-10-fl]
 gi|222450293|gb|ACM54559.1| radical SAM enzyme, Cfr family [Chloroflexus sp. Y-400-fl]
          Length = 376

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 196/359 (54%), Gaps = 30/359 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ-HFSIIYPE 74
           EL E L   G P      R  Q+++ +YV   R    M+D+   +R  L +  FS +  E
Sbjct: 17  ELTELLQSWGEPA----FRARQLYRHLYVNLARQVDQMTDLPLALRSRLAEIPFSTLRCE 72

Query: 75  IVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
            V  +I  +G TRK L R P   +     +ETV +    R T+CVS+Q GC + C FC T
Sbjct: 73  QV--QIGDNGMTRKALFRLPDGAV-----VETVLMVYPDRSTVCVSTQAGCGMGCVFCAT 125

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   L+RNL++ EI+ Q + A          +++  M +     ++SN+V MGMGEP  N
Sbjct: 126 GQLGLLRNLSSGEIVAQAIWA---------SQELRAMGMAGPTGRVSNLVFMGMGEPFAN 176

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
           +D   +++    D  G +   R +T+ST G V  I R+  E + + LAISLHA  + LR+
Sbjct: 177 YDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIERLANERLPINLAISLHAPDDALRS 236

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            L+P+NR+YP+  L+ A R+Y   +  RR++FEYV+L+G ND P  A+ L ++L+    +
Sbjct: 237 ELMPVNRRYPIADLMAATRNYIAKTR-RRVSFEYVLLQGKNDHPHQAIALARLLRHSAPR 295

Query: 313 ------INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                 +NLIP+NP PG     S+ + + TF + +   G    +R  RG++I AACGQL
Sbjct: 296 GPLLFHVNLIPWNPVPGTPLGRSEWERVTTFQQILTDYGIPCTVRVERGVEIAAACGQL 354


>gi|296329385|ref|ZP_06871885.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153505|gb|EFG94323.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 358

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 204/376 (54%), Gaps = 33/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +++ + +EEL E L+ +G+ + + +    +++ W++ +  R F  M+++S + R +L
Sbjct: 4   EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117
            +   I +  ++  ++S  D T K+L        GG   IETV +  K       R TLC
Sbjct: 60  KEKTYIPFFNLLKYQVSKIDKTEKFLFELED---GGT--IETVLLRHKDSKNKEIRNTLC 114

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC + CSFC TG    +RNL+  EIL Q+      L                 G 
Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRL--------------RKKGE 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            ++N+V MGMGEPL N DN+ K+LSI S+  G++ SKR+IT+STSG V  I ++  ++I 
Sbjct: 161 NLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LAISLH+  N+ R+ ++PIN+ +PLE L      Y   +  RRITFEY+++   N S 
Sbjct: 221 IELAISLHSAINEKRDKIIPINKNFPLEDLSAVLIEYQKQT-KRRITFEYILIDNFNISE 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
            DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R  +G
Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGAEHTRPSVKKINKFYNYLKNVRKVNVTLRQEKG 339

Query: 356 LDILAACGQLKSLSKR 371
            DI  ACGQL+  +K+
Sbjct: 340 SDIDGACGQLRQRNKK 355


>gi|254304122|ref|ZP_04971480.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324314|gb|EDK89564.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 358

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 204/376 (54%), Gaps = 33/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +++ + +EEL E L+ +G+ + + +    +++ W++ +  R F  M+++S + R +L
Sbjct: 4   EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKIARSFDEMTNLSLKDREIL 59

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117
            +   I +  ++  ++S  D T K+L        GG   IETV +  K       R TLC
Sbjct: 60  KEKTYIPFFNLLKYQVSKIDKTEKFLFELED---GGT--IETVLLRHKDSKNKEIRNTLC 114

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC + CSFC TG    +RNL+  EIL QV      L                 G 
Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQVYTVERRL--------------RKKGE 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            ++N+V MGMGEPL N DN+ KSLSI S+  G++ SKR+IT+STSG V  I ++  ++I 
Sbjct: 161 TLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILLDKIP 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LA+SLH+  N+ R+ ++PIN+ +PLE L      Y   +  RR+TFEY+++   N S 
Sbjct: 221 IELAVSLHSAINEKRDKIIPINKNFPLEDLSAVLVEYQKQT-KRRVTFEYILIDNFNISE 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
            DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R  +G
Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRKVNVTLRQEKG 339

Query: 356 LDILAACGQLKSLSKR 371
            DI  ACGQL+  +K+
Sbjct: 340 SDIDGACGQLRQRNKK 355


>gi|146299542|ref|YP_001194133.1| radical SAM protein [Flavobacterium johnsoniae UW101]
 gi|205829760|sp|A5FJ06|RLMN_FLAJO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146153960|gb|ABQ04814.1| radical SAM enzyme, Cfr family [Flavobacterium johnsoniae UW101]
          Length = 349

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/334 (34%), Positives = 194/334 (58%), Gaps = 20/334 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +Q+++W++ +G   F+ M+++++  R +L ++F I + ++   + S DGT K  +R 
Sbjct: 28  FRGNQVYEWLWSKGAHSFEDMTNVAKTTRSMLEENFVINHIKVDTMQRSNDGTVKNAVRL 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     +E+V IP ++R T CVSSQVGCSL C+FC T   K +RNL   EI  Q++
Sbjct: 88  HDGLV-----VESVLIPTETRTTACVSSQVGCSLDCNFCATARLKRMRNLEPGEIYDQIM 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                        D E  +  +    +SNIV MGMGEPL N++NV K++ + +   GL  
Sbjct: 143 AI-----------DKESRLYHN--HPLSNIVFMGMGEPLMNYNNVIKAIDMVTSEEGLGM 189

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S +RITLSTSG    I ++ ++ +   LA+SLH+  ++ R  ++P ++ +PL+ L +A  
Sbjct: 190 SPKRITLSTSGIPKMIKKMADDDVKFRLAVSLHSAIDETRAKIMPFSKNFPLKDLREALE 249

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           ++   + ++ +++EYV+ KGIND       L+K  K +P K+NLI +NP    E+  + +
Sbjct: 250 YWYRKTKSK-VSYEYVVWKGINDDKASVDALVKFCKYVPCKVNLIEYNPIDDGEFQQASE 308

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           + I+ + + ++  G    +R  RG DI AACGQL
Sbjct: 309 ESILAYIKALENIGVVVKVRRSRGKDIDAACGQL 342


>gi|255505596|ref|ZP_05347103.3| radical SAM enzyme, Cfr family [Bryantella formatexigens DSM 14469]
 gi|255266841|gb|EET60046.1| radical SAM enzyme, Cfr family [Bryantella formatexigens DSM 14469]
          Length = 354

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 199/365 (54%), Gaps = 29/365 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + ++ L  +  EEL+  L  +G        R  QI++W++ +     Q M+++  ++R  
Sbjct: 6   MNRKDLRSLGYEELQRELEALGEKP----FRAKQIYQWLHEKLADGVQEMTNLPAKLRET 61

Query: 64  LNQHFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L+  +     E+VD  +   DGTRK+L R       G V IE+V +      ++C+SSQ 
Sbjct: 62  LDVRYLCSSLEMVDVLESKADGTRKYLFRLQ----DGNV-IESVLMKYHHGNSVCISSQA 116

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L R+L   E+L Q+                   +    G ++SN+
Sbjct: 117 GCRMGCRFCASTLGGLTRSLLPGEMLDQIY-----------------KIQKHSGERVSNV 159

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V+MG GEPL N++N+ K + + SD  GL+ S+R IT+ST G VPNI R+  E++ + LA+
Sbjct: 160 VVMGTGEPLDNYENLVKFIHMLSDEHGLNISQRNITVSTCGIVPNIYRLAAEKLQITLAL 219

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA + + R  L+PI RKY L  +++ACR Y      RR+TFEY ++ G+NDS  DA  
Sbjct: 220 SLHAPTQEKRMELMPIARKYELSEVMEACRAYF-RETGRRLTFEYSLVGGVNDSQEDARE 278

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +L G+   +NLIP NP     ++ S+++ I  F   +++ G +  IR   G DI  A
Sbjct: 279 LAVLLDGLNCHVNLIPVNPIKERSFVQSERRVIADFKTKLEKYGINVTIRREMGRDIGGA 338

Query: 362 CGQLK 366
           CGQL+
Sbjct: 339 CGQLR 343


>gi|22299968|ref|NP_683215.1| hypothetical protein tll2425 [Thermosynechococcus elongatus BP-1]
 gi|81742271|sp|Q8DG98|RLMN_THEEB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|22296153|dbj|BAC09977.1| tll2425 [Thermosynechococcus elongatus BP-1]
          Length = 337

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/360 (36%), Positives = 186/360 (51%), Gaps = 31/360 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    EL+  +   G P      R  Q+ +W+Y +G R  Q ++   ++ R  L    
Sbjct: 3   LLGRSAAELKAWVEAQGQPG----YRGQQLHQWLYRKGARSLQEITVFPKQWRAALAD-V 57

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I   EI     + DGT K LL      +     IETV IP   R T+CVSSQVGC + C
Sbjct: 58  EIGRSEIRYRHDAQDGTVKLLL-----ALADGETIETVGIPSSDRLTVCVSSQVGCPMAC 112

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNL   EIL QVL  +S                  +GR++S++V MGMG
Sbjct: 113 DFCATGKGGYRRNLACHEILDQVLTIQS-----------------EMGRRVSHVVFMGMG 155

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247
           EPL N   V ++++  +  +G+   +R IT+ST G    I R+ + ++   LA+SLHA +
Sbjct: 156 EPLLNLPAVLQAITCLNRDIGIG--QRHITISTVGIPQQIQRLAQHQLQTTLAVSLHAPN 213

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  + YPL  LI  CR Y      RRITFEY +L G+ND P+ A  L ++L+
Sbjct: 214 QALREQLIPSAKHYPLSQLIADCRAYVQ-QTGRRITFEYTVLAGVNDRPQHAEELAQLLR 272

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP     Y     + +  F   ++  G ++ IR  RGLD  AACGQL+ 
Sbjct: 273 GFQSHVNLIPYNPIAEAAYQRPTDQHLRQFLSQLQALGVTASIRRSRGLDRQAACGQLRQ 332


>gi|268316491|ref|YP_003290210.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252]
 gi|262334025|gb|ACY47822.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252]
          Length = 364

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/344 (36%), Positives = 187/344 (54%), Gaps = 29/344 (8%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R  Q++KWIY +G    + M+D+ +  R  L +   I   E V +  + D T K L R
Sbjct: 28  RYRGRQLFKWIYGKGATSVEQMTDLPRAFRAELARRARITRLEPVRQLTAGDQTVKVLFR 87

Query: 92  FPARCIGGPVEIETVYIPEKS-------RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
            P+        +E+V IP+         R T+CVSSQVGC++ C+FC TG     +NLTA
Sbjct: 88  LPS-----GRHVESVLIPDFDEETGRVRRLTVCVSSQVGCAMGCAFCATGLMGFQQNLTA 142

Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
            EI  QV               +  +     GR+I+N+V MGMGEPL N+D V +S+++ 
Sbjct: 143 GEIYDQVW-------------QLNRLAEERFGRRITNVVYMGMGEPLLNYDAVLRSVALL 189

Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINR--KY 261
           +D  GL  S RRIT+ST G    I ++ ++ +   LA+SLHA +N  R+ ++P+NR  + 
Sbjct: 190 TDRDGLGLSPRRITVSTVGLARRIRQLADDGVRFRLAVSLHAPTNAQRSAIMPVNRNEQT 249

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321
            L+ LI+A R++   +  + IT+EY + +G ND P DA  L  + +  P K+NLI +NP 
Sbjct: 250 DLDDLIEAIRYFEART-GQTITYEYCLFEGFNDRPEDAHRLADLTEQAPGKVNLILYNPV 308

Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            G  +    ++ +  F   +   G +  +R  RG DI AACGQL
Sbjct: 309 EGLPFRRPSEERLQAFIRVLVDRGVTVTVRRSRGQDINAACGQL 352


>gi|237741553|ref|ZP_04572034.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13]
 gi|229429201|gb|EEO39413.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13]
          Length = 358

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 203/376 (53%), Gaps = 33/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +++ + +EEL E L+ +G+ + + +    +++ W++ +  R F  M+++S + R +L
Sbjct: 4   EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117
            +   I +  ++  +IS  D T K+L     +       IETV +  K       R TLC
Sbjct: 60  TEKTYIPFFNLLKHQISKIDRTEKFLFELEDKRT-----IETVLLRHKDSKNKEIRNTLC 114

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC + CSFC TG    +RNL+  EIL Q+      L                 G 
Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRL--------------RKKGE 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            ++N+V MGMGEPL N DN+ KSLSI S+  G++ SKR+IT+STSG V  I ++  ++I 
Sbjct: 161 TLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILLDKIP 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LAISLH+  N+ R+ ++P+N+ +PLE L      Y   +  RRITFEY+++   N S 
Sbjct: 221 IELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQT-KRRITFEYILIDNFNISE 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
            DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R  +G
Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNIRKVNVTLRQEKG 339

Query: 356 LDILAACGQLKSLSKR 371
            DI  ACGQL+  +K+
Sbjct: 340 SDIDGACGQLRQRNKK 355


>gi|291560509|emb|CBL39309.1| 23S rRNA m(2)A-2503 methyltransferase [butyrate-producing bacterium
           SSC/2]
          Length = 343

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/361 (35%), Positives = 198/361 (54%), Gaps = 29/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L  M  +E++E +  IG      + R  QI++W +         M+++ ++++  + Q 
Sbjct: 2   DLKSMTLQEMQEYMESIG----EKKFRAKQIYEWFHKHLALSLDEMNNVPKKLKEKIEQT 57

Query: 68  FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   + VD  IS  DGTRK+L       I     IE+V +  K   ++C+SSQ GC +
Sbjct: 58  QEIYGVKPVDCFISKIDGTRKYLFELYDGNI-----IESVLMKYKHGNSVCISSQAGCRM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +    L RNLT  E+L Q+   +          D E         ++SN+VMMG
Sbjct: 113 GCKFCASTLGGLDRNLTPSEMLSQIYYIQ---------RDTE--------ERVSNVVMMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP+ N+DNV + L + +   GL+ S+R IT+ST G VP I  + ++ + + LAISLH+
Sbjct: 156 TGEPMDNYDNVLRFLELITSEDGLNISQRNITISTCGIVPKIKELAQKHLQITLAISLHS 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R  L+PI  KY ++ L+DAC +Y   +N RR+TFEY ++ G+ND P  A  L   
Sbjct: 216 PNDEMRRGLMPIAMKYSIDELLDACHYYFKETN-RRMTFEYSLVAGVNDQPVHAEELAGR 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG P  +NLIP NP    ++  S  K ++ F + ++++  +  IR   G DI AACGQL
Sbjct: 275 LKGFPCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRVNVTIRREMGADINAACGQL 334

Query: 366 K 366
           +
Sbjct: 335 R 335


>gi|331082368|ref|ZP_08331494.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330400854|gb|EGG80455.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 348

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 187/336 (55%), Gaps = 25/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLR 91
            R  QI++W++ +    F  MS++S  +R  L +   +   ++++ + S  DGT+K+L  
Sbjct: 26  FRAKQIYEWLHQKQAESFDEMSNLSAALREKLKERCVLTTLKMLEVQTSKIDGTQKYLFA 85

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
            P     G V +E+V +  K   ++C+SSQVGC + C FC +      RNL   E+L Q+
Sbjct: 86  LP----DGNV-VESVLMKYKHGNSVCISSQVGCKMGCRFCASTIGGWTRNLLPSEMLEQI 140

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
              + L G+                 ++SN+V+MG GEPL N+DN+ + + + +D  GL 
Sbjct: 141 YRIQKLSGE-----------------RVSNVVVMGTGEPLDNYDNLLQFIRLLTDENGLH 183

Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            S+R +T+ST G VP +  + EE + + LAISLHA +   R  L+PI  KY +  +++AC
Sbjct: 184 ISQRNVTVSTCGIVPKMYELAEENLQITLAISLHASNQAKRAELMPIANKYSINEVLEAC 243

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R+Y      RR+TFEY ++ G ND+  DA  L  ++KG+   +NLIP NP    +Y+ SD
Sbjct: 244 RNYFE-KTGRRLTFEYSLVGGKNDTKEDAEELAHLIKGLNCHVNLIPVNPIKERDYVQSD 302

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +K I  F   +++   +  IR   G DI  ACGQL+
Sbjct: 303 KKVIENFKNKLEKYQINVTIRREMGRDIDGACGQLR 338


>gi|298705390|emb|CBJ28680.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 335

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 189/340 (55%), Gaps = 26/340 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           + R  Q+ KWI+  G   F+ M++I + +R  L +  ++   E+   ++S DGT+K   R
Sbjct: 5   KFRAKQVLKWIFEGGAESFEDMANIPKTLRAKLAKVATVGALEVAARQVSKDGTKKLAYR 64

Query: 92  FPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
                I     IE+V +P    R T C+SSQ GC++ C FC TG     R L+A EI  Q
Sbjct: 65  LSDGQI-----IESVLMPYSDGRRTACISSQAGCAMGCVFCATGQMGFKRQLSAAEIFEQ 119

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
                     +   ++++       G ++SN+V MGMGEPL N+ NV +++   +  +G+
Sbjct: 120 A---------YRFSQELQ-----KRGDRLSNVVFMGMGEPLANYKNVMEAVRRINTELGI 165

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
               R IT+ST G VP I R+ +E I V LA+SLHA ++  R  L+P+NR++PL  L+DA
Sbjct: 166 G--ARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERGALLPVNRRFPLSELMDA 223

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
           CR Y  +S  RR+TFE+ +++G NDS   A  L ++L+ +     +N+IP NP  G +  
Sbjct: 224 CREYVDVS-GRRMTFEWALIQGENDSAEVASELGRLLRPLKGMCHVNIIPLNPTDGYKGG 282

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            S    +  F E + ++G  +  R  RG+DI A CGQL +
Sbjct: 283 PSMADAVNQFVEVLAKNGVPATPRIRRGIDIDAGCGQLTA 322


>gi|260893173|ref|YP_003239270.1| radical SAM enzyme, Cfr family [Ammonifex degensii KC4]
 gi|260865314|gb|ACX52420.1| radical SAM enzyme, Cfr family [Ammonifex degensii KC4]
          Length = 360

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/339 (37%), Positives = 193/339 (56%), Gaps = 29/339 (8%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLL 90
           R R  Q+  W++V+G+  F+ M+++ + +R  L +  SI Y  +  ++ S DG T K+L 
Sbjct: 25  RYRAQQLIDWLFVKGVTSFREMTNLPKTLRERLEEIASITYLSVRVKRCSRDGRTIKFL- 83

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
            + AR   G   IETV++      T+CVS+QVGC + C FC +G + L RNL+A EI  Q
Sbjct: 84  -YLARDGAG---IETVFMRHPWGRTVCVSTQVGCRMGCRFCASGAKGLKRNLSAGEIYEQ 139

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           VL  +  LG+                 +++++V+MGMGEP  N +   + L   +   GL
Sbjct: 140 VLRTQVELGE-----------------RVTHVVLMGMGEPFDNQEATFRFLENITHPAGL 182

Query: 211 SFSKRRITLSTSGFVPNI---ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           +   R+IT+ST G VP I   A++  + G  LA+SLHA  ++LR+ L+PINR+YPL+ L+
Sbjct: 183 NIGARKITISTCGVVPGIRALAQLKRQFG--LAVSLHAPRDELRSWLLPINRRYPLKELL 240

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
            AC  Y   ++ RRITF Y M+ GIND   +A  L ++LKG+   +NLIPFN      + 
Sbjct: 241 AACWEYVEATH-RRITFAYTMIAGINDGQEEARELARLLKGLLCHVNLIPFNLVNERRFR 299

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
                 I  F   ++ +G  + +R  RG +I AACGQL+
Sbjct: 300 PPSPARIEAFCRILEENGIPATVRRSRGEEIEAACGQLR 338


>gi|167750827|ref|ZP_02422954.1| hypothetical protein EUBSIR_01810 [Eubacterium siraeum DSM 15702]
 gi|167656262|gb|EDS00392.1| hypothetical protein EUBSIR_01810 [Eubacterium siraeum DSM 15702]
 gi|291530596|emb|CBK96181.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium siraeum 70/3]
          Length = 338

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 209/371 (56%), Gaps = 37/371 (9%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  ++ + +EELEE +L +G      + R  QI+ W+++  + +F  M+++S ++R  
Sbjct: 1   MEKTDILSLSKEELEEKILAMG----EKKFRAGQIYDWLHINKVEEFSKMTNLSAQLREK 56

Query: 64  LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L+  F I   +I    +S  D T K+L       +    ++ETV +  K   ++C+S+QV
Sbjct: 57  LDDIFWINSLKIQKRLVSDIDNTVKYLY-----GLSDGEKVETVLMEYKHGNSICISTQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +     VRNL   E+LLQ+  +                     GRKI+++
Sbjct: 112 GCKMGCKFCASTKAGFVRNLEPSEMLLQIYESER-----------------DSGRKINHV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           V+MG+GEPL NFDNV K L +  A D M L    R +++ST G V  I  + + ++G+ L
Sbjct: 155 VLMGIGEPLDNFDNVVKFLRLLSAKDDMSL----RHVSVSTCGLVNRIYELADLKLGITL 210

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           ++SLHA +N+LR+ ++PIN ++ +E L++AC++Y   +  RRI++E+ ++ G+ND+ + A
Sbjct: 211 SVSLHAPTNELRSSIMPINDRFRIEELMEACKYYFN-TTGRRISYEFALIDGVNDNRQSA 269

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+K+LKG    +NLIP N     E +      +  + + +   G ++ +R   G DI 
Sbjct: 270 DALLKLLKGQNCHVNLIPVNEIK--EGVFKRSASVEKYKQMLIDGGLNATVRRTLGADIS 327

Query: 360 AACGQLKSLSK 370
           AACGQL+  +K
Sbjct: 328 AACGQLRRDNK 338


>gi|332981566|ref|YP_004463007.1| 23S rRNA m(2)A-2503 methyltransferase [Mahella australiensis 50-1
           BON]
 gi|332699244|gb|AEE96185.1| 23S rRNA m(2)A-2503 methyltransferase [Mahella australiensis 50-1
           BON]
          Length = 344

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 196/361 (54%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  M  +++ + + ++G P      R  QI+ W+Y +G+ D   MSD+  + R  L + 
Sbjct: 6   ALKDMSMDDMSKLVQQLGQPA----YRAQQIFSWVY-KGVDDIDEMSDLPADFRKRLKER 60

Query: 68  FSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
                  I   + S DG+  K+L       I     IE+V +  +   ++CVSSQVGC +
Sbjct: 61  CYTDSCRIYKRQQSEDGSAIKYLFLLKDGNI-----IESVLMLYEYGNSVCVSSQVGCRM 115

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +  + + RNLT  E++ Q+L                  +   VGRKIS++V+MG
Sbjct: 116 GCAFCASTIKGIKRNLTKGEMVDQIL-----------------RIQQDVGRKISHVVLMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N++     + +  +  GL+ S R +TLST G VP I  + +E + + LA+SLHA
Sbjct: 159 SGEPLDNYEQSIAFMRLLHEPKGLNISYRNMTLSTCGLVPRIYDLAKEGMPITLAVSLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++D+R  L+P+++ Y ++ +I AC +Y      RR+TFEY+MLK IND    A  L  +
Sbjct: 219 PNDDIRRQLIPMSKVYSIDDIIKACNYYIE-KTGRRVTFEYIMLKDINDRVEHAYMLADV 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIPFN   GCE+  S QK I  F   + + G    IR   G DI AACGQL
Sbjct: 278 LKGMICHVNLIPFNNVEGCEFQPSSQKQIEHFYGILNKKGIPVSIRRRLGTDIDAACGQL 337

Query: 366 K 366
           +
Sbjct: 338 R 338


>gi|332300071|ref|YP_004441992.1| Ribosomal RNA large subunit methyltransferase N [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177134|gb|AEE12824.1| Ribosomal RNA large subunit methyltransferase N [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 341

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 192/365 (52%), Gaps = 30/365 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             ++G    +L E  + +G+P    +    QI  W+Y + +  +  M+++S++ R LL  
Sbjct: 5   HQILGKTPAQLTELAVGLGLP----KYTGQQIADWLYQKHVSTWDEMTNLSKKARALLAS 60

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           H+ I       ++ S DGT K+L  F A   GG   +ETV IPE  R TLCVSSQ GC +
Sbjct: 61  HYEIGRAAPHLQQTSRDGTVKYL--FAA---GGGF-VETVMIPEGDRATLCVSSQRGCKM 114

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q    NL+A EIL Q+L                   +P V  +++NIV MG
Sbjct: 115 NCLFCMTGKQGFGANLSASEILNQIL------------------SVPEVN-ELTNIVFMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEP+ N D + + +   +D  GL+ S +RIT+ST G  P + R  EE    LAISLH  
Sbjct: 156 MGEPMDNIDTLLQVIRCLTDPKGLAMSPKRITVSTIGLRPGLERFLEECTCHLAISLHNP 215

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
             + R  ++P+ R  PL   +   RHY   S  RR+TFEY++  G+ND+PR    L ++L
Sbjct: 216 LPEERLAIMPVERAMPLADTVALLRHY-DWSRQRRLTFEYIVFSGLNDTPRHLAALKRLL 274

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             +   +NLI ++  P  +   SD   +    + +  +G  + IRT RG DI AACG L 
Sbjct: 275 SQLDCHVNLIRYHRIPHIDLPSSDMTRMEWLRDRLCEAGIPTTIRTSRGEDISAACGMLS 334

Query: 367 SLSKR 371
           +  ++
Sbjct: 335 TQEQQ 339


>gi|225871755|ref|YP_002753209.1| radical SAM enzyme, Cfr family [Acidobacterium capsulatum ATCC
           51196]
 gi|225791340|gb|ACO31430.1| radical SAM enzyme, Cfr family [Acidobacterium capsulatum ATCC
           51196]
          Length = 396

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 202/392 (51%), Gaps = 61/392 (15%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
           L G+  EEL EAL    +P   +R    Q+   +Y +    +  ++ + QE+R  L +  
Sbjct: 27  LFGLSFEELSEALADFRLPPWRLR----QVRHALYRQWAASWSEVTTLPQELRESLEKAG 82

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK---------------- 111
           F+   P IV+   S DGT ++L+   A   G  VE  TV++P                  
Sbjct: 83  FAPGLPGIVETFRSVDGTERYLI---AGHDGQTVE--TVWMPGGDGGEAGDGSGSDGAGD 137

Query: 112 ------------SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL--LARSL 157
                        R T+CVSSQ+GC++ C FC T    ++RNLTA EI  QV+  L R  
Sbjct: 138 DRPGEDSGEAAYQRATICVSSQIGCAVNCQFCLTARLGIIRNLTAGEIAGQVVAVLKRQQ 197

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
           +                +GR   N+V MGMGEP  N+D    ++ + SD +G+  S  R+
Sbjct: 198 V---------------EMGRDRINLVFMGMGEPFLNYDAFMDAVRLLSDEVGIPVS--RM 240

Query: 218 TLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           T+STSG VP I R  EE +   LAISL+A  + +R  ++PINRK+ +  ++DA R  P L
Sbjct: 241 TVSTSGIVPGILRFAEEPVRPKLAISLNAPDDIVREAVMPINRKWDIAEVLDAVRKVP-L 299

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDI 334
               R+TFEYV+L G+ND P  A  + ++L+   +P K+NLI +NP P   Y     +D+
Sbjct: 300 RAKERVTFEYVLLGGVNDQPEHAETVARLLRRANLPLKVNLIVWNPGPDVPYTMPKAEDV 359

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             F E +   G  + IR PRG DI AACGQLK
Sbjct: 360 AAFQEYLVGKGVPAYIRRPRGRDIYAACGQLK 391


>gi|313886711|ref|ZP_07820421.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923873|gb|EFR34672.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 341

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 192/365 (52%), Gaps = 30/365 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             ++G    +L E  + +G+P    +    QI  W+Y + +  +  M+++S++ R LL  
Sbjct: 5   HQILGKTPTQLTELAVGLGLP----KYTGQQIADWLYQKHVSTWDEMTNLSKKARALLAS 60

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           H+ I       ++ S DGT K+L  F A   GG   IETV IPE  R TLCVSSQ GC +
Sbjct: 61  HYEIGRAAPHLQQTSRDGTVKYL--FAA---GGGF-IETVMIPEGDRATLCVSSQRGCKM 114

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q    NL+A EIL Q+L                   +P V  +++NIV MG
Sbjct: 115 NCLFCMTGKQGFGANLSASEILNQIL------------------SVPEVN-ELTNIVFMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEP+ N D + + +   +D  GL+ S +RIT+ST G  P + R  EE    LAISLH  
Sbjct: 156 MGEPMDNIDTLLQVIRCLTDPQGLAMSPKRITVSTIGLRPGLERFLEECTCHLAISLHNP 215

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
             + R  ++P+ R  PL   +   RHY   S  RR+TFEY++  G+ND+PR    L ++L
Sbjct: 216 LPEERLSIMPVERAMPLADTVALLRHY-DWSRQRRLTFEYIVFSGLNDTPRHLAALKRLL 274

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             +   +NLI ++  P  +   SD   +    + +  +G  + IRT RG DI AACG L 
Sbjct: 275 AQLDCHVNLIRYHRIPHIDLPSSDMTRMEWLRDRLCEAGIPTTIRTSRGEDISAACGMLS 334

Query: 367 SLSKR 371
           +  ++
Sbjct: 335 TQEQQ 339


>gi|325261901|ref|ZP_08128639.1| radical SAM enzyme, Cfr family [Clostridium sp. D5]
 gi|324033355|gb|EGB94632.1| radical SAM enzyme, Cfr family [Clostridium sp. D5]
          Length = 345

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 119/363 (32%), Positives = 200/363 (55%), Gaps = 29/363 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +     E+L+  +  IG      + R  Q+++W++V+    F  M+++S+E+R  L+
Sbjct: 2   KKDIRAYTYEQLQAEMAAIG----EKKFRAKQLYEWLHVKLAGSFDEMTNLSRELREKLD 57

Query: 66  QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + + I+   +++ + S  DGT K+L     + +     +E+V +  K   ++C+SSQVGC
Sbjct: 58  REYEILPVRMLERQESQMDGTNKFLFMLHDQNV-----VESVLMRYKHGNSVCISSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    LVRNL+  E+L Q+   + + G+                 ++SN+V+
Sbjct: 113 RMGCRFCASTIGGLVRNLSPSEMLGQIYEIQKVTGE-----------------RVSNVVI 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG GEPL N++N    + + +D  GL  S+R +T+ST G VP +  + EE + + LA+SL
Sbjct: 156 MGTGEPLDNYENFLCFIRLLTDEHGLHISQRNVTVSTCGIVPKMLELAEENLQITLALSL 215

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H  + + R  L+P+  KY L  ++ AC  Y      RRITFEY ++ G+ND+  DA  LI
Sbjct: 216 HGTTQEKRKELMPVANKYELSDVLHACDEYF-RKTGRRITFEYSLVHGVNDTDEDAGELI 274

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +ILK     +NLIP NP     ++   +K+ + F   +++SG +  IR   G DI  ACG
Sbjct: 275 RILKPRNCHLNLIPVNPVKERSFVRPSRKNALNFKNKLEKSGINVTIRREMGADIDGACG 334

Query: 364 QLK 366
           QL+
Sbjct: 335 QLR 337


>gi|78184186|ref|YP_376621.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
           CC9902]
 gi|123743556|sp|Q3AZA0|RLMN_SYNS9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78168480|gb|ABB25577.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 351

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 193/369 (52%), Gaps = 37/369 (10%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLL 64
           K  L+G    ELE+      + Q H   R  QI  W+Y +G++    +S + ++ R  L 
Sbjct: 2   KNVLLGRSAAELED----WAVAQGHKSFRGRQIHDWLYNKGVKSLSEISALPKQWRTELE 57

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q F +   ++V + ++ D T K LL            IETV IP   R T+C+SSQVGC
Sbjct: 58  AQTFRVGRLKLVHQSVAADATTKLLL-----ATDDGETIETVGIPTDQRLTVCISSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L R+L   EI+ QVL  R                  ++ R+ S++V 
Sbjct: 113 PMACRFCATGKSGLQRSLATHEIVDQVLSVRE-----------------AMDRRPSHVVF 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---V 237
           MGMGEPL N + V +++   +  +G+   +RRIT+ST G    +P +A +  E++G    
Sbjct: 156 MGMGEPLLNSEAVLETIRCLNTDLGIG--QRRITVSTVGVPKTLPQLAELAMEKLGRAQF 213

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA +  LR  L+P    YP + L+D CRHY  L+  RR++FEY++L  +ND P 
Sbjct: 214 TLAVSLHAPNQQLREELIPTAHAYPYDDLLDDCRHYLDLT-GRRVSFEYILLGELNDHPE 272

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L   + G  + +NLI +NP    E+     + I  F   ++R G +  +R  RGLD
Sbjct: 273 HAAELADRVGGFQSHVNLIAYNPIEEEEFKRPTSQRIEAFRRVLERRGVAVSLRASRGLD 332

Query: 358 ILAACGQLK 366
             AACGQL+
Sbjct: 333 QNAACGQLR 341


>gi|320334270|ref|YP_004170981.1| ribosomal RNA large subunit methyltransferase N [Deinococcus
           maricopensis DSM 21211]
 gi|319755559|gb|ADV67316.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus
           maricopensis DSM 21211]
          Length = 346

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 178/335 (53%), Gaps = 24/335 (7%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+ +W++ +G   F+ M+++   VR  L   +S+      +   S DG+ K+L    
Sbjct: 18  RRKQLLQWVFEKGAGRFEDMTNLPANVRAELAASYSLDPFLHTETARSRDGSVKYLF--- 74

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL- 152
              +    ++E VY+P   R T+CVS+ VGC   C+FC TG     RNLTA EI+ QVL 
Sbjct: 75  --TLHDGKQMEAVYMPYLDRKTVCVSTMVGCPAKCAFCATGAMGFGRNLTAGEIVGQVLA 132

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +AR             G  +P   R I ++V MGMGE L N+DNV  +  I    +    
Sbjct: 133 VAR-------------GEGLPP--RDIRSLVFMGMGEGLLNYDNVMLASRILLHPLAFDM 177

Query: 213 SKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
           SKRR+TLST G    I ++  E  +G+ LAISLHA   + R  ++P   +  +  ++DA 
Sbjct: 178 SKRRVTLSTVGLPKGIRKLAREDDLGIRLAISLHAPDEETRQRIIPTGHRNSIADIMDAA 237

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R Y  ++  RRITFEY ML+G+ND    A  L  +L+G+ A +NLIP NPW G  +  S 
Sbjct: 238 REYQDVT-GRRITFEYSMLRGVNDHLWQAEELAGLLRGLVAHVNLIPMNPWEGSGFEEST 296

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +  I  F + +   G    +R  RG D  AACGQL
Sbjct: 297 EAQIQAFYDVLSARGVEVSVRRSRGRDAGAACGQL 331


>gi|329120993|ref|ZP_08249624.1| cfr family radical SAM enzyme [Dialister micraerophilus DSM 19965]
 gi|327471155|gb|EGF16609.1| cfr family radical SAM enzyme [Dialister micraerophilus DSM 19965]
          Length = 344

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 199/358 (55%), Gaps = 29/358 (8%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
           G   +ELEE +     P    + R  QI  ++Y R I  F  M  + + +R  L ++ SI
Sbjct: 7   GKSLKELEEYITLNNFP----KFRAKQIHDYLYHRCIFTFDEMKQLPKNMREWLKENASI 62

Query: 71  IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
             PE+++   S DG T K L +     +      ETV +  K   ++CVS+Q+GC++ C 
Sbjct: 63  YIPEVINSIQSNDGNTTKILFKLKDGSLA-----ETVCMHHKYGNSICVSTQIGCAMGCI 117

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +    L RNLT  E+L QV   + L       ++I           + +IV+MG GE
Sbjct: 118 FCASTRNGLERNLTFGEMLSQVYAFKKL-------KNIS----------VHSIVLMGAGE 160

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           PL N++N  K + + +DS  L+ S R ITLST G VP I R+ +E + + LAISLHA ++
Sbjct: 161 PLTNYENCLKFIKLCNDSSILNISYRNITLSTCGIVPQIYRLEKENLPITLAISLHAPND 220

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
            +RN ++P ++ + +E +I A +HY   +  RRITFEY+++KGIN +P+ A+ L K++  
Sbjct: 221 KIRNEILPSSKHFKIEDVIRASKHYFE-NTGRRITFEYILIKGINAAPKHAVELAKLIGN 279

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +   INLIP N     +     +K+I  F + +++ G S+ +R   G +I AACGQLK
Sbjct: 280 LNCHINLIPVNGTEHIQLFAPSKKEIFEFQQILEKMGKSATVRRQMGNEIQAACGQLK 337


>gi|269216514|ref|ZP_06160368.1| radical SAM enzyme, Cfr family [Slackia exigua ATCC 700122]
 gi|269130043|gb|EEZ61125.1| radical SAM enzyme, Cfr family [Slackia exigua ATCC 700122]
          Length = 345

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 193/360 (53%), Gaps = 32/360 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E   A+ ++ +P      R  QI +W+Y +G   +  M+++S+ +R  L     +  P I
Sbjct: 11  EAATAIKELDLPA----FRARQIAQWVYGKGAASYDEMTNLSRSLRERLAVELPLYTPRI 66

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
           VD +IS DGTRK+++ F           E V +P  +R T+C S+QVGC++ CSFC TG 
Sbjct: 67  VDRQISQDGTRKYIVAFH-----DGASTEMVAMPYGNRLTVCFSTQVGCAMQCSFCATGK 121

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
           +   RNL   E++ Q++LA                    +G ++SN+V MG GEPL N +
Sbjct: 122 EGFTRNLVPGEMVDQIILAEK-----------------DMGTRVSNVVSMGQGEPLLNLE 164

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGVMLAISLHAVSNDLRN 252
           N+  +L I +D        R I +ST G V  I   A +GE+   +LA+SLH+   + R+
Sbjct: 165 NLSAALEILNDPAYRGIGARHIVVSTCGIVQGIRAFADIGEQ--YVLAVSLHSAIQETRD 222

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
           +++P     P++ LI+A + Y   ++ RR+TFEYV+++G+ND  R    LI I +   + 
Sbjct: 223 MIMPRVANQPIDALIEAIQEYDRKTH-RRVTFEYVLIQGMNDDRRHIDALIDICRRTHSN 281

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
           +NLI  N      +  S +K  + F + +K +G  + IR  RG DI  ACGQLK+   R+
Sbjct: 282 VNLIELNEIEESPFRPSGRKVSLEFVKRLKSAGIEASIRDSRGSDIAGACGQLKNERARL 341


>gi|159025948|emb|CAO86242.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 337

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 191/361 (52%), Gaps = 31/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+    EEL + +   G P      R  Q+ +W+Y +G+     +S   QE R  L   
Sbjct: 2   TLLAKSLEELTDWVKDQGQPA----YRGKQLHQWLYEKGVHSLADISVFPQEWRSKLAD- 56

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           + I    I    ++ D TRK+LL+     I     IE V IP + R T+CVSSQVGC + 
Sbjct: 57  YPIGRSLIHYRSVAPDRTRKYLLKLADGLI-----IEAVGIPSEKRLTVCVSSQVGCPMA 111

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG     RNL A EI+ QVL  +         ED +        +++S++V MGM
Sbjct: 112 CDFCATGKGGFTRNLKAYEIVDQVLTVQ---------EDFQ--------QRVSHVVFMGM 154

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N   V  ++   +  +G+   +R +T+ST G    I ++ E  + V  A+SLHA 
Sbjct: 155 GEPLLNIPEVVTAIHSLNQDVGIG--QRCLTISTVGLPHKIKQLAEHNLQVTFAVSLHAS 212

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +  +R  L+P    YPL  LI  C+ Y  ++  RR+TFEY++L G+ND P  A  L+K++
Sbjct: 213 NQQVRAKLIPSADHYPLTNLIQDCQEYVQIT-GRRVTFEYILLAGVNDLPEHARELVKLV 271

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KG  + +NLIP+NP    +Y   D+K I  F   +++   +  +R  RGL   AACGQL+
Sbjct: 272 KGFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAVTVRYSRGLAADAACGQLR 331

Query: 367 S 367
           S
Sbjct: 332 S 332


>gi|237745020|ref|ZP_04575501.1| radical SAM family enzyme [Fusobacterium sp. 7_1]
 gi|229432249|gb|EEO42461.1| radical SAM family enzyme [Fusobacterium sp. 7_1]
          Length = 358

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 203/376 (53%), Gaps = 33/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +++ + +EEL E L+ +G+ + + +    +++ W++ +  R F  M+++S + R +L
Sbjct: 4   EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117
            +   I +  ++  +IS  D T K+L     +       IETV +  K       R TLC
Sbjct: 60  KEKTYIPFFNLLKHQISKIDRTEKFLFELEDKGT-----IETVLLRHKDSKNKEIRNTLC 114

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +SSQVGC + CSFC TG    +RNL+  EIL QV      L                 G 
Sbjct: 115 ISSQVGCPVKCSFCATGQSGYMRNLSVSEILNQVYTVERRL--------------RKKGE 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            ++N+V MGMGEPL N DN+ KSLSI S+  G++ SKR+IT+STSG V  I ++  ++I 
Sbjct: 161 TLNNLVFMGMGEPLLNIDNLAKSLSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LAISLH+  N+ R+ ++P+N+ +PLE L      Y   +  RRITFEY+++   N S 
Sbjct: 221 IELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEYQKQT-KRRITFEYILIDNFNISE 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
            DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R  +G
Sbjct: 280 TDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRRVNVTLRQEKG 339

Query: 356 LDILAACGQLKSLSKR 371
            DI  ACGQL+  +K+
Sbjct: 340 SDIDGACGQLRQRNKK 355


>gi|160880620|ref|YP_001559588.1| radical SAM protein [Clostridium phytofermentans ISDg]
 gi|205829644|sp|A9KM95|RLMN_CLOPH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|160429286|gb|ABX42849.1| radical SAM enzyme, Cfr family [Clostridium phytofermentans ISDg]
          Length = 356

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 198/354 (55%), Gaps = 29/354 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL+ +L  IG  +     R  QI++W++V+ +RDF+ M+++S+E+R  L   + +I   
Sbjct: 16  EELKASLKIIGEKE----FRAKQIYEWLHVKLVRDFEEMTNLSKELRAKLASEYELICVN 71

Query: 75  IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
            ++   S  DGT K+L R       G V +E V +      ++C+SSQVGC + C FC +
Sbjct: 72  DLERYESKMDGTVKYLFRLS----DGNV-VECVLMKYHHGNSVCISSQVGCRMGCRFCAS 126

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
               L RNL   E+L +V   + L G+                 ++SNIV+MG GEP+ N
Sbjct: 127 TLGGLTRNLKTSEMLDEVYQIQRLSGE-----------------RVSNIVIMGTGEPMDN 169

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
           +DN  K + + S S GL+ S+R IT+ST G VP +  + EE   + LA+SLHA +++ R 
Sbjct: 170 YDNFVKFIRMISSSDGLNISQRNITVSTCGIVPKMRALAEEGFAITLALSLHAPNDEERA 229

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            ++P+   Y L+ +++AC +Y      RR+++EY ++ G+ND+   A  L ++LKG    
Sbjct: 230 KIMPVANSYQLQDVLNACDYYYE-KTGRRVSYEYSLVDGVNDTAACAKELSRLLKGKNCH 288

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +NLIP NP    +Y  S   +I  F   ++++  +  IR   G DI AACGQL+
Sbjct: 289 VNLIPVNPIKERDYKRSTGNNIQNFKNILEKNRINVTIRREMGSDINAACGQLR 342


>gi|196233391|ref|ZP_03132235.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
 gi|196222531|gb|EDY17057.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
          Length = 367

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 134/341 (39%), Positives = 180/341 (52%), Gaps = 28/341 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ---HFSIIYPEIVDEKISCDG-TRKW 88
           + T  +W+ +Y  G  D    S+    +R  L+       +  PE+V +  S DG TRK+
Sbjct: 33  VHTHALWRALYREGATDLARRSEFLPPLRRWLDAATARLPVDVPELVADTASTDGLTRKF 92

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           LLR     +     IETV +  + R T CVS+Q GC++ C FC TG     R+L   EI+
Sbjct: 93  LLR-----LADAQTIETVLMSYRGRYTACVSTQAGCAMGCVFCATGQMGFTRHLRPGEIV 147

Query: 149 LQVLLA-RSLLG-DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
            QVL A R+LL    PG               + N+V+MGMGEPL N+D+V  +L I SD
Sbjct: 148 AQVLHAQRTLLARSEPG---------------LRNLVLMGMGEPLHNYDSVMTALEIISD 192

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             GL+     IT+ST G VP I R+ EE     LA+SLH  S + R+ LVP +R++ L  
Sbjct: 193 RRGLNIGPGHITISTVGVVPGILRLAEEQRPYHLAVSLHGASEEERSALVPASRRWSLAE 252

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           LI ACR Y G    RRI FE+ ++ G NDSP  A  L  +L GI A +NLIP NP  G  
Sbjct: 253 LIAACRTY-GAKTGRRIFFEWTLIAGQNDSPAQAARLAALLAGIDAHVNLIPLNPTGGFA 311

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
              S       F   +K +   S +R  RG+D+ A CGQL+
Sbjct: 312 GTASASAAANEFQHTLKAANIPSTVRQRRGIDVAAGCGQLR 352


>gi|308173538|ref|YP_003920243.1| Fe-S-cluster AdoMet radical enzyme [Bacillus amyloliquefaciens DSM
           7]
 gi|307606402|emb|CBI42773.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus
           amyloliquefaciens DSM 7]
          Length = 363

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 190/340 (55%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y + +  F  M+++S+ +R  L  +F +   +   ++ S DGT K+L   
Sbjct: 40  FRAAQIFEWLYEKRVSSFDEMTNLSKSLREKLESNFVMTTMKTAVKQTSQDGTMKFLFE- 98

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +  +   ++CV++QVGC + C+FC +    L RNL A EI+ QV+
Sbjct: 99  ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 154

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S++V+MG+GEP  NF+ +   L I +   GL+ 
Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I    ++ + +  AISLHA + ++R+ L+PIN+ Y L  L++A +
Sbjct: 201 GARHITVSTSGIIPKIYDFADQKMQINFAISLHAPNTEIRSRLMPINKAYKLPDLMEAVK 260

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RRI+FEY +  G+ND    A  L ++LKG+   +NLIP N  P  +Y+ + +
Sbjct: 261 YYIE-KTGRRISFEYGLFGGVNDQVEHAEELAELLKGVKCHVNLIPVNYVPERDYVRTPR 319

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             I  F + +K  G +  IR  +G DI AACGQL++  ++
Sbjct: 320 DQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLRAKERQ 359


>gi|332799418|ref|YP_004460917.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
           sp. Re1]
 gi|332697153|gb|AEE91610.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
           sp. Re1]
          Length = 343

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 205/368 (55%), Gaps = 36/368 (9%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K +L  +   ++EE + ++G P      R  QI+KWIY +G  +F+ M+D+S+++   
Sbjct: 1   MEKTNLKSLTLTQMEEFIKQLGEPV----YRAKQIFKWIY-KGQTEFEKMTDLSKDLIAR 55

Query: 64  LNQHFSI----IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           L     +    IY +   E    D T K++         G + +E+V +      T C+S
Sbjct: 56  LKDCAYVGKIDIYKKYESE---IDETTKYVFALE----DGQM-VESVKMKYSFGTTACIS 107

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGCS+ C+FC +    +VRNL   E+  +V+                  +      KI
Sbjct: 108 SQVGCSMGCAFCASTEGGMVRNLAWWEMADEVI-----------------AIEKDSNVKI 150

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           S +V+MG GEPL N+D + + L I +  +  + S RR+T+ST G VP I R+ EE + + 
Sbjct: 151 SRVVVMGSGEPLLNYDELIQFLRILNSPLAFNISYRRLTVSTCGIVPKIIRLAEEGLPIT 210

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA ++D+R+ L+PIN +YP+  L+DAC++Y  +   RRITFEY+++  IND+ + 
Sbjct: 211 LAVSLHAPNDDIRSSLMPINERYPILQLLDACKYYI-MKTKRRITFEYILISDINDTEQC 269

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L  +LK +   +NLIP NP  G ++  SD   I  F + +  +G S+ +R   G DI
Sbjct: 270 ACELSNLLKDLLCHVNLIPLNPVEGKKFKKSDDSRIRKFEQILLNNGISATVRREMGSDI 329

Query: 359 LAACGQLK 366
            AACGQL+
Sbjct: 330 NAACGQLR 337


>gi|210135589|ref|YP_002302028.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori P12]
 gi|254807183|sp|B6JNS0|RLMN_HELP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|210133557|gb|ACJ08548.1| radical SAM domain-containing enzyme [Helicobacter pylori P12]
          Length = 357

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/354 (36%), Positives = 196/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L + F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + C+FC+T     VRN
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDKETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFVRN 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I    G+ +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  + +P L   +R+ FEY+++K +ND    A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVKKWP-LEQRKRVMFEYLLIKDLNDGLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K LS++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357


>gi|291536614|emb|CBL09726.1| 23S rRNA m(2)A-2503 methyltransferase [Roseburia intestinalis
           M50/1]
          Length = 349

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 123/366 (33%), Positives = 200/366 (54%), Gaps = 33/366 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  +  M  EEL+  +  IG        R  Q+++W++ +    F  M+++S+ ++  L
Sbjct: 4   EKTDIKSMNLEELKSYMESIGEKP----FRAKQLYQWMHEKQAASFDEMTNLSKSLQEKL 59

Query: 65  NQ--HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            +  HF  +  E V  +IS  DGTRK+L         G V IE+V +  K   ++C+SSQ
Sbjct: 60  KKECHFVSLKQEAV--QISKIDGTRKYLFALD----DGNV-IESVLMRYKHGNSVCISSQ 112

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC +    LVR LT  E+L Q+                   +    G +++N
Sbjct: 113 VGCRMGCRFCASTLDGLVRGLTPSEMLDQIY-----------------RITRDTGERVAN 155

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           +V+MG GEP+ NFDN+ K + + +D  GL+ S+R +T+ST G VP +  + ++ + + LA
Sbjct: 156 VVVMGTGEPMDNFDNLLKFIELLTDENGLNISQRNVTVSTCGIVPKMRELADKKLQITLA 215

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA S + R  L+P+  KY +  +I+ACR+Y   +  RR+TFEY ++ G+ND+  D  
Sbjct: 216 LSLHASSQEKRLELMPVANKYEIHEVIEACRYYFEQT-GRRVTFEYSLVGGVNDTDEDVR 274

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L  ++ G+   +NLIP NP     Y+  D + I+ F   ++++  +  IR   G DI  
Sbjct: 275 RLADLIHGMNCHVNLIPVNPIKERSYVQPDHEAILNFKNRLEKNAINVTIRREMGRDIDG 334

Query: 361 ACGQLK 366
           ACGQL+
Sbjct: 335 ACGQLR 340


>gi|118472101|ref|YP_886882.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           smegmatis str. MC2 155]
 gi|205829815|sp|A0QVE4|RLMN_MYCS2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118173388|gb|ABK74284.1| radical SAM enzyme, Cfr family protein [Mycobacterium smegmatis
           str. MC2 155]
          Length = 372

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 196/358 (54%), Gaps = 27/358 (7%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-- 77
           A+ ++G+P      R  Q+    Y R I D Q M+D+   VR   +Q    ++P +++  
Sbjct: 30  AVTELGLPA----FRAKQLANQYYGRLIADPQQMTDLPAAVR---DQVAEKLFPTLINPV 82

Query: 78  EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
            +I CD   TRK L R     I G    E+V +    R T+C+SSQ GC + C FC TG 
Sbjct: 83  REIQCDAGETRKTLWR----AIDGST-FESVLMRYPQRNTVCISSQAGCGMACPFCATGQ 137

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             L RNLT  EIL QV  A S +      E        + G ++SNIV MGMGEPL N++
Sbjct: 138 GGLQRNLTTAEILEQVRAASSTM----RAEHFGRTAGTAGGGRLSNIVFMGMGEPLANYN 193

Query: 196 NVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            V  ++   IA+   G   S R +T+ST G  P I ++ +E +GV LA+SLHA  ++LR+
Sbjct: 194 RVLGAVRRIIAAPPNGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSLHAPDDELRD 253

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--P 310
            LVP+N ++ +  ++DA R+Y   +  RR++ EY +++ +ND P  A  L K L G   P
Sbjct: 254 TLVPVNNRWKVSEVLDAARYYAD-TTGRRVSIEYALIRDVNDQPWRADLLGKKLHGALGP 312

Query: 311 -AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            A +N+IP NP PG E+  S +     F + ++  G S  +R  RG +I AACGQL +
Sbjct: 313 LAHVNVIPLNPTPGSEWDASPKPAEREFVKRVRERGVSCTVRDTRGREIAAACGQLAA 370


>gi|256844888|ref|ZP_05550346.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2]
 gi|256718447|gb|EEU32002.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2]
          Length = 358

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 203/376 (53%), Gaps = 33/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +++ + +EEL E L+ +G+ + + +    +++ W++ +  R F  M+++S + R +L
Sbjct: 4   EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117
            +   I +  ++  ++S  D T K+L     +       IETV +  K       R TLC
Sbjct: 60  KEKTYIPFFNLLKYQVSKIDKTEKFLFELEDKGT-----IETVLLRHKDSKNREIRNTLC 114

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC + CSFC TG    +RNL+  EIL Q+      L                 G 
Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRL--------------RKKGE 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            ++N+V MGMGEPL N DN+ KSLSI S+  G++ SKR+IT+STSG V  I ++  ++I 
Sbjct: 161 TLNNLVFMGMGEPLLNIDNLAKSLSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LAISLH+  N+ R+ ++P+N+ +PLE L      Y   +  RRITFEY+++   N S 
Sbjct: 221 IELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQT-KRRITFEYILIDNFNISE 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
            DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R  +G
Sbjct: 280 ADANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRKVNVTLRQEKG 339

Query: 356 LDILAACGQLKSLSKR 371
            DI  ACGQL+  +K+
Sbjct: 340 SDIDGACGQLRQRNKK 355


>gi|328553529|gb|AEB24021.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           amyloliquefaciens TA208]
 gi|328911679|gb|AEB63275.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus
           amyloliquefaciens LL3]
          Length = 363

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 190/340 (55%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y + +  F  M+++S+ +R  L  +F +   +   ++ S DGT K+L   
Sbjct: 40  FRAAQIFEWLYEKRVSSFDEMTNLSKSLREKLESNFVMTTLKTAVKQTSQDGTMKFLFE- 98

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +  +   ++CV++QVGC + C+FC +    L RNL A EI+ QV+
Sbjct: 99  ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 154

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S++V+MG+GEP  NF+ +   L I +   GL+ 
Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I    ++ + +  AISLHA + ++R+ L+PIN+ Y L  L++A +
Sbjct: 201 GARHITVSTSGIIPKIYDFADQKMQINFAISLHAPNTEIRSRLMPINKAYKLPDLMEAVK 260

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RRI+FEY +  G+ND    A  L ++LKG+   +NLIP N  P  +Y+ + +
Sbjct: 261 YYIE-KTGRRISFEYGLFGGVNDQVEHAEELAELLKGVKCHVNLIPVNYVPERDYVRTPR 319

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             I  F + +K  G +  IR  +G DI AACGQL++  ++
Sbjct: 320 DQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLRAKERQ 359


>gi|291547144|emb|CBL20252.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus sp. SR1/5]
          Length = 346

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 126/357 (35%), Positives = 196/357 (54%), Gaps = 30/357 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  EEL+E + KIG        R  QI+ W++ + +  +  M+++S+ +R  L+  + I 
Sbjct: 7   MTMEELKEFMTKIG----EKPFRAKQIYAWLHQQLVTSWDEMTNLSKSLREKLSA-YPIT 61

Query: 72  YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
                D +IS  DGTRK+L +       G V IE+V +      ++C+SSQVGC + C F
Sbjct: 62  ALTQADVRISKIDGTRKYLFQLE----DGNV-IESVLMRYHHGNSVCISSQVGCRMGCRF 116

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +    L R L   E+L Q+                   +    G +++N+V+MG GEP
Sbjct: 117 CASTIGGLTRCLKPSEMLDQIY-----------------RIQADTGERVANVVVMGTGEP 159

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
           + N+DN+ + + I +D  GL  S+R +T+ST G VP +  + EE + + LA+SLHA +++
Sbjct: 160 MDNYDNLVRFVRILTDENGLGISQRNVTVSTCGIVPKMYDLAEEKLQITLALSLHAPNDE 219

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R  L+PI  KY ++ ++DACR+Y      RRITFEY ++ G+NDS  DA  L   +KGI
Sbjct: 220 KRQELMPIANKYSMDEVLDACRNYFD-KTGRRITFEYSLVAGVNDSEEDARQLAGRIKGI 278

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
              +NLIP NP     Y+ S ++ +  F   +++ G +  IR   G DI  ACGQL+
Sbjct: 279 NCHVNLIPVNPIKERSYVRSTRQAVENFKIKLEKYGINVTIRREMGSDIDGACGQLR 335


>gi|148655521|ref|YP_001275726.1| ribosomal RNA large subunit methyltransferase N [Roseiflexus sp.
           RS-1]
 gi|205829870|sp|A5UT23|RLMN_ROSS1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|148567631|gb|ABQ89776.1| radical SAM enzyme, Cfr family [Roseiflexus sp. RS-1]
          Length = 399

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 140/401 (34%), Positives = 206/401 (51%), Gaps = 49/401 (12%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN     +L  +   E+E  +   G P      R  QI++ +YV  +     M+D+   +
Sbjct: 2   MNQDTLPNLYDLSLAEMERLMTAWGQPA----YRARQIFRQLYVNLVDSPLAMTDLPLAL 57

Query: 61  RHLL--NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
           R  L      + + PE V   ++  G TRK L R     +   V IE+V +    R T+C
Sbjct: 58  RERLVAETRLAPLAPEQV--HVADQGLTRKALFR-----LENGVLIESVLMIYPDRATVC 110

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP---- 173
           VS+Q GC + C FC TGT  L+RNL+  +I+ QV+ A   +  F     I   + P    
Sbjct: 111 VSTQAGCGMGCVFCATGTLGLLRNLSPGDIVAQVVWAAREMRRFAAERCISPSLAPPDDD 170

Query: 174 -------------------SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
                              SV R +SNIV MGMGEP  N+D   +++ I  D  GL+   
Sbjct: 171 SWWTPDTLEDQGSSEARSISVSR-LSNIVFMGMGEPFANYDRWWRAVEILHDPRGLNMGA 229

Query: 215 RRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
           R +T+ST G +P I R+  E + + LAISLHA  + LR+ L+P+NR+YPL  L++A R Y
Sbjct: 230 RSMTVSTVGLIPGIRRLATETLPINLAISLHAPDDALRSALMPVNRRYPLAALLEATRDY 289

Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKG------IP---AKINLIPFNPWPGC 324
              +  RR++FEYV+L+G ND P  A  L  +L G      +P     +NLIP+NP PG 
Sbjct: 290 LA-ATGRRVSFEYVLLQGKNDEPEHAAKLAALLHGEAGTTPLPLHLVHVNLIPWNPVPGM 348

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               S+++ ++TF   ++  G +  +R  RG+ I AACGQL
Sbjct: 349 PLGRSERRRVLTFQRILRERGIACTVRVERGVSIAAACGQL 389


>gi|294785829|ref|ZP_06751117.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27]
 gi|294487543|gb|EFG34905.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27]
          Length = 358

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 203/376 (53%), Gaps = 33/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +++ + +EEL E L+ +G+ + + +    +++ W++ +  R F  M+++S + R +L
Sbjct: 4   EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117
            +   I +  ++  ++S  D T K+L     +       IETV +  K       R TLC
Sbjct: 60  KEKTYIPFFNLLKYQVSKIDKTEKFLFELEDKGT-----IETVLLRHKDSKNREIRNTLC 114

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC + CSFC TG    +RNL+  EIL Q+      L                 G 
Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRL--------------RKKGE 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            ++N+V MGMGEPL N DN+ KSLSI S+  G++ SKR+IT+STSG V  I ++  ++I 
Sbjct: 161 TLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILLDKIP 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LAISLH+  N+ R+ ++P+N+ +PLE L      Y   +  RRITFEY+++   N S 
Sbjct: 221 IELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQT-KRRITFEYILIDNFNISE 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
            DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R  +G
Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNIRKVNVTLRQEKG 339

Query: 356 LDILAACGQLKSLSKR 371
            DI  ACGQL+  +K+
Sbjct: 340 SDIDGACGQLRQRNKK 355


>gi|19703861|ref|NP_603423.1| florfenicol resistance protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|81590892|sp|Q8RFZ9|RLMN_FUSNN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|19714019|gb|AAL94722.1| Florfenicol resistance protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 358

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 204/376 (54%), Gaps = 33/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +++ + +EEL E L+ +G+ + + +    +++ W++ +  R F  M+++S + R +L
Sbjct: 4   EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117
            +   I +  ++  ++S  D T K+L        GG   IETV +  K       R TLC
Sbjct: 60  KEKTYIPFFNLLKYQVSKIDKTEKFLFELED---GGT--IETVLLRHKDSKNKEIRNTLC 114

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC + CSFC TG    +RNL+  EIL Q+      L                 G 
Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRL--------------RKKGE 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            ++N+V MGMGEPL N DN+ K+LSI S+  G++ SKR+IT+STSG V  I ++  ++I 
Sbjct: 161 NLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LAISLH+  N+ R+ ++PIN+ +PLE L      Y   +  RRITFEY+++   N S 
Sbjct: 221 IELAISLHSAINEKRDKIIPINKNFPLEDLSAVLIEYQKQT-KRRITFEYILIDNFNISE 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
            DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R  +G
Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGAEHTRPSVKKINKFYIYLKNVRKVNVTLRQEKG 339

Query: 356 LDILAACGQLKSLSKR 371
            DI  ACGQL+  +K+
Sbjct: 340 SDIDGACGQLRQRNKK 355


>gi|291541044|emb|CBL14155.1| 23S rRNA m(2)A-2503 methyltransferase [Roseburia intestinalis
           XB6B4]
          Length = 349

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 200/366 (54%), Gaps = 33/366 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  +  M  EEL+  +  IG        R  Q+++W++ +    F  M+++S+ ++  L
Sbjct: 4   EKTDIKSMNLEELKSYMESIGEKP----FRAKQLYQWMHEKQAASFDEMTNLSKSIQEKL 59

Query: 65  NQ--HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            +  HF  +  E V  +IS  DGTRK+L         G V IE+V +  K   ++C+SSQ
Sbjct: 60  KKECHFVSLKQEAV--QISKIDGTRKYLFALD----DGNV-IESVLMRYKHGNSVCISSQ 112

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC +    LVR LT  E+L Q+                   +    G +++N
Sbjct: 113 VGCRMGCRFCASTLDGLVRGLTPSEMLDQIY-----------------RITRDTGERVAN 155

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           +V+MG GEP+ NFDN+ + + + +D  GL+ S+R +T+ST G VP +  + ++ + + LA
Sbjct: 156 VVVMGTGEPMDNFDNLLRFIELLTDENGLNISQRNVTVSTCGIVPKMRELADKKLQITLA 215

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA S + R  L+P+  KY +  +I+ACR+Y   +  RR+TFEY ++ G+ND+  D  
Sbjct: 216 LSLHASSQEKRLELMPVANKYEIHEVIEACRYYFEQT-GRRVTFEYSLVGGVNDTDEDVR 274

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L  ++ G+   +NLIP NP     Y+  D + I+ F   ++++  +  IR   G DI  
Sbjct: 275 RLADLIHGMNCHVNLIPVNPIKERSYVQPDHEAILNFKNRLEKNAINVTIRREMGRDIDG 334

Query: 361 ACGQLK 366
           ACGQL+
Sbjct: 335 ACGQLR 340


>gi|303233443|ref|ZP_07320111.1| 23S rRNA m2A2503 methyltransferase [Atopobium vaginae PB189-T1-4]
 gi|302480451|gb|EFL43543.1| 23S rRNA m2A2503 methyltransferase [Atopobium vaginae PB189-T1-4]
          Length = 403

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 184/346 (53%), Gaps = 23/346 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI  W++   I  F  M++IS+ +R  L + F +  P  +++++S DG+RK+LL  
Sbjct: 79  FRAKQIEDWLWHYNIGSFDDMTNISKALRAQLAKQFYLYAPRAINKQVSQDGSRKYLL-- 136

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +   + +E V +P   + ++CVSSQ GC++ C FC TG   L RNL A+EI  Q L
Sbjct: 137 ---LLEDGISVECVGMPNGDKLSVCVSSQAGCAMGCVFCATGKAGLRRNLFADEIYQQAL 193

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             R         +D +GM       +ISNIV+MG GEPL N+    ++L + ++ +GL  
Sbjct: 194 FIR---------DDFDGM-------RISNIVLMGQGEPLTNYTQALRALRLFNNPLGLGI 237

Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R +TLST G +PNIA+   EE    LA+SLH+     R+ L+P  +K+ L  L +  +
Sbjct: 238 GARHLTLSTCGIIPNIAKFAQEEEQFTLAVSLHSAVQKTRDYLMPGVKKFSLVNLYNMMQ 297

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y   +  RR ++EY ++KG+ND+P +   L    +G    +NLI  N      +  + +
Sbjct: 298 TYVQKTK-RRPSYEYALIKGVNDTPEELQALCDFCRGTLCHVNLIQLNEIDDSPFKPTSE 356

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
           K    F   +   G  + IR  RG DI AACGQL+  S  + K  R
Sbjct: 357 KRAQEFVRALNACGVEATIRVSRGQDIDAACGQLQQRSCPLNKQKR 402


>gi|330752186|emb|CBL87145.1| radical SAM superfamily protein, UPF0063 [uncultured Flavobacteria
           bacterium]
          Length = 349

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 122/349 (34%), Positives = 185/349 (53%), Gaps = 19/349 (5%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
           +EA+++          R  Q+++W++ +    F  M+++S   R LLN +F+    E+  
Sbjct: 13  QEAIIEFFEAHNEQSFRAKQVYQWLWQKSASSFDEMTNLSISTRALLNANFNFNLLEVDL 72

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
            + S DGT K  ++           +E+V IP + R T CVSSQVGCSL C+FC T + K
Sbjct: 73  MQRSKDGTIKNAVKLHDGAF-----VESVLIPTEKRITACVSSQVGCSLDCTFCATASLK 127

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
            +RNL  +EI  QV++  +   ++              GR ++NIV MGMGEPL N++NV
Sbjct: 128 RMRNLGPDEIYDQVVVIHNQGKEY-------------FGRPLTNIVFMGMGEPLLNYNNV 174

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVP 256
             ++   +D  GL  S RRITLST G    I R+ ++ +   LAISLH+   + R  L+P
Sbjct: 175 LAAIEKITDPKGLGLSPRRITLSTIGVPKLIKRMADDGVKFNLAISLHSAIEEKRAKLMP 234

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
           +  K    + +     Y      R +TFEYV+ K +ND+ +D   L K    IP K+N+I
Sbjct: 235 LAHKSATLVDLRESLQYWYAKTGRGVTFEYVIWKDLNDTEQDVKALAKFCGAIPTKVNII 294

Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +NP     Y  + Q+ +  + E ++  G  + IR  RG DI AACGQL
Sbjct: 295 QYNPIDNGPYTQASQEAVNMYKETLESKGIITTIRHSRGQDIDAACGQL 343


>gi|330752065|emb|CBL80576.1| radical SAM superfamily protein, UPF0063 [uncultured Flavobacteria
           bacterium]
          Length = 349

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 122/349 (34%), Positives = 185/349 (53%), Gaps = 19/349 (5%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
           +EA+++          R  Q+++W++ +    F  M+++S   R LLN +F+    E+  
Sbjct: 13  QEAIIEFFEAHNEQSFRAKQVYQWLWQKSASSFDEMTNLSISTRALLNANFNFNLLEVDL 72

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
            + S DGT K  ++           +E+V IP + R T CVSSQVGCSL C+FC T + K
Sbjct: 73  MQRSKDGTIKNAVKLHDGAF-----VESVLIPTEKRITACVSSQVGCSLDCTFCATASLK 127

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
            +RNL  +EI  QV++  +   ++              GR ++NIV MGMGEPL N++NV
Sbjct: 128 RMRNLGLDEIYDQVVVIHNQGKEY-------------FGRPLTNIVFMGMGEPLLNYNNV 174

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVP 256
             ++   +D  GL  S RRITLST G    I R+ ++ +   LAISLH+   + R  L+P
Sbjct: 175 LAAIEKITDPKGLGLSPRRITLSTIGVPKLIKRMADDGVKFNLAISLHSAIEEKRAKLMP 234

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
           +  K    + +     Y      R +TFEYV+ K +ND+ +D   L K    IP K+N+I
Sbjct: 235 LAHKSATLVDLRESLQYWYAKTGRGVTFEYVIWKDLNDTEQDVKALAKFCGAIPTKVNII 294

Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +NP     Y  + Q+ +  + E ++  G  + IR  RG DI AACGQL
Sbjct: 295 QYNPIDNGPYTQASQEAVNMYKETLESKGIITTIRHSRGQDIDAACGQL 343


>gi|186684082|ref|YP_001867278.1| ribosomal RNA large subunit methyltransferase N [Nostoc punctiforme
           PCC 73102]
 gi|205829792|sp|B2J6D0|RLMN_NOSP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|186466534|gb|ACC82335.1| radical SAM enzyme, Cfr family [Nostoc punctiforme PCC 73102]
          Length = 364

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 196/368 (53%), Gaps = 39/368 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    EL   + + G P      R  Q+ +WIY +G+R    +S  S++ R  + +  
Sbjct: 24  LLGASVAELSAWVQQQGQPA----YRGKQLHEWIYDKGVRSLADISVFSKQWRAEVAE-I 78

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--------KSRGTLCVSS 120
            I    +    ++ DGT K+LLR     I     IETV IP         K+R T+CVS+
Sbjct: 79  PIGRSTLHYRSVAPDGTVKYLLRLTDGQI-----IETVGIPTFAERGEGPKARLTVCVST 133

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC TG     RNL   EI+ QVL  +         ED +        +++S
Sbjct: 134 QVGCPMACDFCATGKGGYKRNLARHEIIDQVLTVQ---------EDFQ--------QRVS 176

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           N+V MG+GEPL N +NV  +L   +  +G+   +R +T+ST G    I +  +  + + L
Sbjct: 177 NVVFMGLGEPLLNTENVLAALKSLNQDIGIG--QRSLTVSTVGIRDRIRQFAQNNLQITL 234

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +  LR  L+P  R YPLE L+  CR Y  ++  RR+TFEYV+L G+ND P  A
Sbjct: 235 AVSLHAPNQALREKLIPSARAYPLEELLAECREYVEIT-GRRVTFEYVLLAGVNDLPEHA 293

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L L K ++G  + +NLIP+NP    +Y   ++  I  F   +K+   +  +R  RGL+  
Sbjct: 294 LELSKCMRGFQSHVNLIPYNPIQEVDYKRPNRDRIEAFVNVLKQQNTAVSVRYSRGLEAD 353

Query: 360 AACGQLKS 367
           AACGQL++
Sbjct: 354 AACGQLRA 361


>gi|75909016|ref|YP_323312.1| ribosomal RNA large subunit methyltransferase N [Anabaena
           variabilis ATCC 29413]
 gi|123772627|sp|Q3M9B9|RLMN_ANAVT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|75702741|gb|ABA22417.1| 23S rRNA m(2)A-2503 methyltransferase [Anabaena variabilis ATCC
           29413]
          Length = 355

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 192/364 (52%), Gaps = 31/364 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    EL   + + G P      R  Q+  WIY +G+R    +S  S++ R  +    
Sbjct: 22  LLGASVTELTSWVQQQGQPA----YRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVAD-V 76

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I    I    ++ DGT K+LL+     I     +ETV IP   R T+CVS+QVGC + C
Sbjct: 77  PIGRSTIHHRSVASDGTVKYLLQLSDGEI-----VETVGIPTDKRLTVCVSTQVGCPMAC 131

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNL   EI+ QVL  +         ED +        +++S++V MGMG
Sbjct: 132 DFCATGKGGYKRNLERHEIVDQVLTVQ---------EDFQ--------QRVSHVVFMGMG 174

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EPL N +NV  +L   +  +G+   +R +TLST G    I+++ E  + V LA+SLHA +
Sbjct: 175 EPLLNTENVLAALRSLNQDVGIG--QRSLTLSTVGIRDRISQLAEHHLQVTLAVSLHAPN 232

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  R Y +E L+  CR Y  ++  RRI+FEY++L G+ND P  AL L K L+
Sbjct: 233 QALREQLIPSARSYHIEDLLAECREYVAIT-GRRISFEYILLAGVNDLPEHALELSKHLR 291

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G    +NLIP+NP    +Y       I  F   +++   +  +R  RGL+  AACGQL++
Sbjct: 292 GFQNHVNLIPYNPISEVDYKRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRT 351

Query: 368 LSKR 371
            + R
Sbjct: 352 KTSR 355


>gi|260494797|ref|ZP_05814927.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
           3_1_33]
 gi|260197959|gb|EEW95476.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
           3_1_33]
          Length = 358

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 203/376 (53%), Gaps = 33/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +++ + +EEL E L+ +G+ + + +    +++ W++ +  R F  M+++S + R +L
Sbjct: 4   EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117
            +   I +  ++  +IS  D T K+L     +       IETV +  K       R TLC
Sbjct: 60  KEKTYIPFFNLLKHQISKIDRTEKFLFELEDKGT-----IETVLLRHKDSKNKEIRNTLC 114

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +SSQVGC + CSFC TG    +RNL+  EIL QV      L                 G 
Sbjct: 115 ISSQVGCPVKCSFCATGQSGYMRNLSVSEILNQVYTVERRL--------------RKKGE 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            ++N+V MGMGEPL N DN+ K+LSI S+  G++ SKR+IT+STSG V  I ++  ++I 
Sbjct: 161 TLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LAISLH+  N+ R+ ++P+N+ +PLE L      Y   +  RRITFEY+++   N S 
Sbjct: 221 IELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEYQKQT-KRRITFEYILIDNFNISE 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
            DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R  +G
Sbjct: 280 TDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRRVNVTLRQEKG 339

Query: 356 LDILAACGQLKSLSKR 371
            DI  ACGQL+  +K+
Sbjct: 340 SDIDGACGQLRQRNKK 355


>gi|294783089|ref|ZP_06748413.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA]
 gi|294479967|gb|EFG27744.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA]
          Length = 358

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 204/376 (54%), Gaps = 33/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +++ + +EEL E L+ +G+ + + +    +++ W++ + IR+F  M+++S + R +L
Sbjct: 4   EKVNILNLTQEELTEFLVSLGLKKFYGK----EVFIWLHKKIIRNFDDMTNLSLKDREIL 59

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117
            ++  I +  ++  ++S  D T K+L     +       IETV +  +       R TLC
Sbjct: 60  KENAYIPFFNLLKHQVSKLDKTEKFLFELEDKGT-----IETVLLRHRDSKNKEIRNTLC 114

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC + CSFC TG    +RNL+  EIL QV      L                   
Sbjct: 115 VSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVERRL--------------RKKDE 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            ++N+V MGMGEPL N DN+  +LSI S+  G++ SKR+IT+STSG V  I ++  E+I 
Sbjct: 161 SLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKITISTSGIVSGIEKILLEKIP 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LA+SLH+  N+ R+ ++PIN+ +PLE L      Y   +  RRITFEY+++   N S 
Sbjct: 221 IELAVSLHSAINEKRDQIIPINKNFPLEDLSAVLVEYQKQT-KRRITFEYILIDNFNISE 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
            DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R  +G
Sbjct: 280 VDANALADFIHQFDHVVNLIPYNEVEGVEHKRPSMKKIDRFYNYLKNVRKVNVTLRQEKG 339

Query: 356 LDILAACGQLKSLSKR 371
            DI  ACGQL+  +K+
Sbjct: 340 SDIDGACGQLRQRNKK 355


>gi|313891997|ref|ZP_07825598.1| 23S rRNA m2A2503 methyltransferase [Dialister microaerophilus UPII
           345-E]
 gi|313119640|gb|EFR42831.1| 23S rRNA m2A2503 methyltransferase [Dialister microaerophilus UPII
           345-E]
          Length = 344

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 198/358 (55%), Gaps = 29/358 (8%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
           G   +ELEE +     P    + R  QI  ++Y R I  F  M  + + +R  L ++ SI
Sbjct: 7   GKSLKELEEYITLNNFP----KFRAKQIHDYLYHRCIFTFDEMKQLPKNMREWLKENASI 62

Query: 71  IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
             PE+++   S DG T K L +     +      ETV +  K   ++CVS+Q+GC++ C 
Sbjct: 63  YIPEVINSIQSNDGNTTKILFKLKDGSLA-----ETVCMHHKYGNSICVSTQIGCAMGCI 117

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +    L RNLT  E+L QV   + L       ++I           + +IV+MG GE
Sbjct: 118 FCASTRNGLERNLTFGEMLSQVYAFKKL-------KNIS----------VHSIVLMGAGE 160

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           PL N++N  K + + +DS  L+ S R ITLST G VP I R+ +E + + LAISLHA ++
Sbjct: 161 PLTNYENCLKFIKLCNDSSILNISYRNITLSTCGIVPQIYRLEKENLPITLAISLHAPND 220

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
            +RN ++P ++ + +E +I A +HY   +  RRITFEY+++KGIN +P  A+ L K++  
Sbjct: 221 KIRNEILPSSKHFKIEDVIRASKHYFE-NTGRRITFEYILIKGINAAPEHAVELAKLVGN 279

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +   INLIP N     +     +K+I  F + +++ G S+ +R   G +I AACGQLK
Sbjct: 280 LNCHINLIPVNGTEHIQLFAPSKKEIFEFQQILEKMGKSATVRRQMGNEIQAACGQLK 337


>gi|317011560|gb|ADU85307.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori SouthAfrica7]
          Length = 357

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 129/354 (36%), Positives = 196/354 (55%), Gaps = 31/354 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q++ W+Y +    F+ M ++ S++    L Q F++   EI   + S DG++K+L +
Sbjct: 21  FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIASLEQEFTLRTIEITHVRESVDGSKKYLFK 80

Query: 92  -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  F A   +     ++ ET  I E  + T+CVS Q+GC + CSFC+T     VR+
Sbjct: 81  SLRDNHTFEAVLLKMKDKKIDGETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRD 140

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L A EI+ Q LL +            E   +P    K  NIV MGMGEPL N D V K++
Sbjct: 141 LKASEIVQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRK 260
            I +   G+  S +RIT+STSG    I  +  + +GV LAISLHAV +  R+ L+P+N+K
Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILASKNLGVQLAISLHAVDDKTRSSLMPLNKK 244

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           Y +E +++  + +P L   +R+ FEY+++K +NDS   A  L+K+L GI +K+NLI FNP
Sbjct: 245 YNIECVLNEVKKWP-LEQRKRVMFEYLLIKNLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372
             G ++     +    F++ +   G    IR  + LDI AACGQL  K L ++I
Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLQQKI 357


>gi|46446329|ref|YP_007694.1| hypothetical protein pc0695 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399970|emb|CAF23419.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 330

 Score =  205 bits (522), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 126/326 (38%), Positives = 179/326 (54%), Gaps = 20/326 (6%)

Query: 41  WIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGP 100
           WIY +G+  +  MS++SQ +R  L +H  +   E+V    S D   +  ++F  R   G 
Sbjct: 3   WIYQKGVLSWDKMSNLSQSLREKLAKHIRLPVLELVRYTESID---QETIKFLWRLRDGN 59

Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           + +E+V I    R T+CVSSQVGC   C+FC +G Q   RNL   EI+ Q+L   + L  
Sbjct: 60  L-VESVLILSGIRRTVCVSSQVGCPAKCAFCASGQQGFFRNLRPTEIIEQILQINAWLS- 117

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
                        S G K+S++V MGMGEPL N+++V  S+ + S     + S+RRIT+S
Sbjct: 118 -------------SKGEKVSHVVYMGMGEPLKNYESVVASIRVLSHPDFCNISQRRITVS 164

Query: 221 TSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T G V  I R+ +E + V L +SLHA +  +R  ++P  RKYPLE ++++   Y      
Sbjct: 165 TVGVVEGIKRLSKEGLKVNLVLSLHAPNQHIRKKIIPYARKYPLEEILESMDEY-AQKTK 223

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339
           R ITFEY +L GIND P  A  L  +LKG    +NLIP+NP PG      ++K I  F  
Sbjct: 224 RDITFEYTLLAGINDHPDHAHELAHLLKGKQCTVNLIPYNPIPGLRLKRPEKKAIKQFRS 283

Query: 340 CIKRSGYSSPIRTPRGLDILAACGQL 365
            +  S   +  R  +G DI AACGQL
Sbjct: 284 VLYGSHIVNTCRYTKGDDIGAACGQL 309


>gi|297624942|ref|YP_003706376.1| radical SAM domain-containing protein [Truepera radiovictrix DSM
           17093]
 gi|297166122|gb|ADI15833.1| radical SAM enzyme, Cfr family [Truepera radiovictrix DSM 17093]
          Length = 349

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 172/333 (51%), Gaps = 21/333 (6%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R +Q+  W+Y RG   ++ M+++ +  R  L   + +     ++  +S D + ++LL  P
Sbjct: 24  RRAQLAAWLYQRGALSWEAMTNLPRAWRAELGARYRLSPFVRLERFVSADASVRYLLTLP 83

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
                   + E VY+P + R TLCVSS VGC   C+FC TG     RNL+  EIL Q+L+
Sbjct: 84  -----DGKQTEAVYMPYRGRKTLCVSSMVGCPAGCAFCATGALGFGRNLSRAEILGQLLV 138

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                G  P              R+I N+V+MGMGE L N+DN   ++       GL  S
Sbjct: 139 VAQAEGIAP--------------REIRNVVLMGMGEALLNYDNALGAIRTMIHPEGLDMS 184

Query: 214 KRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            RRITLST G    I R+  E + ++LA+SLHA     R  ++P    + +E +I A   
Sbjct: 185 PRRITLSTVGLPGRIRRLAAERLPLVLAVSLHAPDEKTRREIIPTAHAHAIEEIIAALHD 244

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           +   +  RR+T EY ML G+ND+   A  L+ +L+G+   +NLIPFNPW    +  S + 
Sbjct: 245 WQA-AGGRRVTIEYTMLAGVNDALWQAEALVALLRGLVVHVNLIPFNPWGASPFRSSSRA 303

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            I  F   +  +G S  +R  RG D   ACGQL
Sbjct: 304 QIARFERVLTGAGLSVSVRFSRGRDTGGACGQL 336


>gi|293374997|ref|ZP_06621292.1| radical SAM enzyme, Cfr family [Turicibacter sanguinis PC909]
 gi|325843362|ref|ZP_08167945.1| 23S rRNA m2A2503 methyltransferase [Turicibacter sp. HGF1]
 gi|292646407|gb|EFF64422.1| radical SAM enzyme, Cfr family [Turicibacter sanguinis PC909]
 gi|325489391|gb|EGC91764.1| 23S rRNA m2A2503 methyltransferase [Turicibacter sp. HGF1]
          Length = 347

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 192/341 (56%), Gaps = 21/341 (6%)

Query: 28  QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRK 87
           Q+  + R +QI+ W++ + +     MS++ ++++ L+ + F +   +   ++++ DGT K
Sbjct: 21  QKQPKFRANQIFDWLFKKRVTSIDEMSNLPKDLKGLMQESFDVTTLKERKKQVASDGTTK 80

Query: 88  WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
           +L       +     IETV +  K   ++CV++QVGC + C FC +    L RNL A EI
Sbjct: 81  FLFELSDGDL-----IETVLMRHKYGCSVCVTTQVGCRIGCKFCASTLSGLKRNLQAGEI 135

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
           + QVL  +  L +                 ++S+IV+MG+GEP  N++N+ K + I +  
Sbjct: 136 VAQVLRVQQYLDESQ--------------ERVSHIVVMGIGEPFENYENLTKFIEIINSE 181

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEML 266
            GL+   R IT+STSG VP I    ++   V  A+SLHA +++LR  L+PINR YPLE L
Sbjct: 182 KGLNIGSRHITVSTSGIVPKIYNFADQHPQVSFAVSLHAPTDELRTQLMPINRAYPLEKL 241

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           ++A ++Y   +N RRITFEY ++K +ND+   A  L  ++  +   INLIP N  P   +
Sbjct: 242 MEAVKYYIKQTN-RRITFEYGLIKNVNDTVECANQLADLVGRLNCHINLIPVNYVPERGF 300

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             +  + I  F + +K+ G +  +R   G DI AACGQL++
Sbjct: 301 DRTPIEHIEKFEQTLKKRGVNVTVRRELGSDIDAACGQLRA 341


>gi|254442505|ref|ZP_05055981.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
 gi|198256813|gb|EDY81121.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
          Length = 368

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 198/376 (52%), Gaps = 27/376 (7%)

Query: 1   MNFL-KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
           M +L +K  + G   E L+    ++G P    + R  Q+ +W+Y +    +  M+++ + 
Sbjct: 1   MKYLPEKPPIYGETLESLQARFAELGEP----KFRAKQVLEWLYKKRAETWDAMTNLPKP 56

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI--------PEK 111
           +R  L   F I   + V  K S D T K LL+     +G    IETV I         E 
Sbjct: 57  LREKLAAAFEIAPSKRVLAKESSDETEKLLLQ-----MGDNSMIETVVIRAPQIGVGQEN 111

Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
           SR T+C+S+QVGC+  C FC +G     R+L+  EI+ Q++    +       ED     
Sbjct: 112 SRKTICISTQVGCAYGCKFCASGLLGWKRDLSVGEIVSQLIHVCHM-------EDATTER 164

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
                    NIV+MGMGEP+ N+ N+  +L I +   GL+F  RRIT+STSG VP I  +
Sbjct: 165 ASEEIASFDNIVVMGMGEPMANYKNLLPALRILNADWGLNFGARRITISTSGVVPRILEL 224

Query: 232 GEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            +E     LA+SLH  +N++R+ ++P+NRKYPLE L+ A + Y   +  R IT E+++++
Sbjct: 225 ADEREQFRLAVSLHGATNEVRDQIMPVNRKYPLEKLLPAIQKY-AQTKGRMITLEFILIE 283

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
            IND+   A  L KI   + A +NLIP+N   G ++          F   +K  G S+ I
Sbjct: 284 EINDTLEQADALTKIALDLKAHVNLIPYNTVDGLDWKRPSITRQDVFYNRLKNRGVSATI 343

Query: 351 RTPRGLDILAACGQLK 366
           R  +G DI AACGQLK
Sbjct: 344 RREKGHDIAAACGQLK 359


>gi|325955527|ref|YP_004239187.1| ribosomal RNA large subunit methyltransferase N [Weeksella virosa
           DSM 16922]
 gi|323438145|gb|ADX68609.1| Ribosomal RNA large subunit methyltransferase N [Weeksella virosa
           DSM 16922]
          Length = 348

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 209/372 (56%), Gaps = 25/372 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN  KK+ +  + +++LE     IG        R  Q+++W++ +   DF  M+++S+ +
Sbjct: 1   MNPTKKD-IRKLSQQDLEVYFQSIG----EKAFRGKQVYEWLWKKNAHDFNDMTNLSKNL 55

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L+  F I   E+   + S DGT    ++   +   G V +E+V IP ++R T C+SS
Sbjct: 56  RENLDAAFRIQPVEVDFLQKSNDGT----IKNAVKLHDGNV-VESVLIPTETRTTACISS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL C+FC T   K +RNLTA EI+ QV++             I+        R +S
Sbjct: 111 QVGCSLDCTFCATAQLKRMRNLTAAEIVDQVVI-------------IDRESREYFDRPLS 157

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           NIV MGMGEPL N+  V +++   +   GL  S RRITLSTSG    I ++  E++ + L
Sbjct: 158 NIVFMGMGEPLLNYTEVVEAIKKITLPEGLGMSPRRITLSTSGIPKMIEKLADEDLKIGL 217

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+   ++RN ++P + K+PL  L+ + +++   + + +ITFEY++ K IND   D 
Sbjct: 218 AVSLHSAREEIRNKIMPFSVKFPLTDLLKSLQYWYDTTKS-KITFEYIVWKDINDKKEDI 276

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L++  K +P+K+N+I +N      Y  +  + +  + + ++++G    +R  RG DI 
Sbjct: 277 DALVRFCKRVPSKVNIIEYNTIDDGPYQQASPQVLNAYIDALEKNGIIVNVRRSRGKDID 336

Query: 360 AACGQLKSLSKR 371
           AACGQL + + +
Sbjct: 337 AACGQLANKTTK 348


>gi|255016116|ref|ZP_05288242.1| hypothetical protein B2_19608 [Bacteroides sp. 2_1_7]
 gi|256842536|ref|ZP_05548038.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides
           sp. D13]
 gi|256735892|gb|EEU49224.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides
           sp. D13]
          Length = 334

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/358 (37%), Positives = 183/358 (51%), Gaps = 33/358 (9%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI- 70
           M  EEL+    ++G+P    +    Q+  WIY + I     M++I+   R LL   F I 
Sbjct: 1   MTLEELKGVASEVGLPAYAAK----QMADWIYKKKITRISEMTNIAVAKRALLEDSFEIG 56

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQVGCSLTCS 129
            YP    +K S DGT K+L         GP   +E+VYIP   R TLCVSSQVGC + C 
Sbjct: 57  AYPPSEYQK-SKDGTIKYLYA------AGPGRFVESVYIPTDDRATLCVSSQVGCKMNCL 109

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG Q    NLTA +IL Q+                    +P     ++NIV MGMGE
Sbjct: 110 FCMTGKQGFTANLTANQILNQI------------------QSLPE-NDSLTNIVFMGMGE 150

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249
           PL N D + K L I +   G ++S +RIT+ST G    + R  EE    LA+SLH+    
Sbjct: 151 PLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVSLHSPYPM 210

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R  L+P+ + +P   +ID  + Y   S+ RR++FEY++ K +NDS + A  L  +L GI
Sbjct: 211 ERLSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEALSCLLGGI 269

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           P ++NLI F+  P      SD   +  F + +   G    IR  RG DI AACG L +
Sbjct: 270 PCRVNLIRFHAIPNVSLETSDIAKMEAFRDFLNAKGVVCTIRASRGEDIFAACGMLST 327


>gi|332708170|ref|ZP_08428163.1| 23S rRNA m(2)A-2503 methyltransferase [Lyngbya majuscula 3L]
 gi|332353072|gb|EGJ32619.1| 23S rRNA m(2)A-2503 methyltransferase [Lyngbya majuscula 3L]
          Length = 351

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/360 (36%), Positives = 192/360 (53%), Gaps = 31/360 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    EL   + + G P      R  Q+  WIY +G+R    +S   ++ R+ +    
Sbjct: 18  LLGASLVELTSWIQEQGQPA----YRGRQLHGWIYEKGVRSLSEISVFPKQWRNTVAD-V 72

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I    +     + DGT K+LL+     I     IETV IP   R T+CVSSQVGC + C
Sbjct: 73  PIGRSRLHYRLEAKDGTVKYLLQLSDGQI-----IETVGIPTPKRLTVCVSSQVGCPMAC 127

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNL   EI+ QVL  R         ED +         ++SN+V MGMG
Sbjct: 128 DFCATGKGGFTRNLARHEIVDQVLTVR---------EDFQ--------ERVSNVVFMGMG 170

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247
           EPL N + V  ++   +  +G+    R +T+ST G    I ++ + ++ V LA+SLHA +
Sbjct: 171 EPLLNTEAVVGAVKSLNQDLGIG--ARSLTISTVGIPGRIRQLAQHQLQVTLAVSLHASN 228

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  + YPL+ L+D CR Y  L+ +RR+TFEY++L G+ND    A+ L K L+
Sbjct: 229 QQLREQLIPSAKHYPLKALLDECRDYVNLT-SRRVTFEYILLGGLNDCREHAVELAKNLR 287

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP    +Y   + + I  F E +K+   +  +R  RGLD  AACGQL++
Sbjct: 288 GFQSHVNLIPYNPISEVDYQRPNYRRIQGFVEALKQQHIAVSVRHSRGLDKDAACGQLRA 347


>gi|153809821|ref|ZP_01962489.1| hypothetical protein RUMOBE_00202 [Ruminococcus obeum ATCC 29174]
 gi|149833999|gb|EDM89079.1| hypothetical protein RUMOBE_00202 [Ruminococcus obeum ATCC 29174]
          Length = 346

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 197/357 (55%), Gaps = 30/357 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  +EL+E + +IG        R  QI+ W++   +  +  M+++ + ++  L   + I 
Sbjct: 7   MTIDELKELMTQIG----EKPFRAKQIYSWLHEHLVTSYDEMANLPKNLKQKL-ADYPIT 61

Query: 72  YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
             E +D +IS  DGTRK+L R     +     IE+V +  K   ++C+SSQ GC + C F
Sbjct: 62  ALETLDVQISKVDGTRKYLFRLSDGNM-----IESVLMRYKYGNSVCISSQAGCRMGCRF 116

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +    L RNL   E+L Q+   ++                 S+G +ISN+V+MG GEP
Sbjct: 117 CASTIGGLTRNLLPSEMLDQIYRIQT-----------------SIGERISNVVVMGTGEP 159

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
           L N+DN+ + + I ++  G+  S+R +T+ST G VP I  + EE + + LA+SLHA +++
Sbjct: 160 LDNYDNLLRFIHILTEDGGIHISQRNLTVSTCGLVPKIYELAEEKLQMTLAVSLHAPNDE 219

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R  L+PI  KY ++ L+ ACR+Y      RRITFEY ++ G+NDS  +A  L   LKG+
Sbjct: 220 KRRELMPIANKYSIDELLAACRNYFD-KTGRRITFEYSLVAGVNDSKENAQELAGRLKGL 278

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
              +NLIP NP     ++ S ++ +  F   +++ G +  IR   G DI  ACGQL+
Sbjct: 279 NCHVNLIPVNPVRERSFVRSTREAVENFKINLEKCGINGTIRREMGSDIDGACGQLR 335


>gi|116071168|ref|ZP_01468437.1| hypothetical protein BL107_16020 [Synechococcus sp. BL107]
 gi|116066573|gb|EAU72330.1| hypothetical protein BL107_16020 [Synechococcus sp. BL107]
          Length = 348

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 192/366 (52%), Gaps = 37/366 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLNQH 67
           L+G    ELE+      I Q H   R  QI  W+Y +G++    ++ + ++ R  L +Q 
Sbjct: 5   LLGRSAAELED----WAIAQGHKSFRGRQIHDWLYNKGVKSLSEITALPKQWRTELEDQT 60

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F +   ++V + ++ D T K LL            IETV IP   R T+C+SSQVGC + 
Sbjct: 61  FRVGRLKLVHQSVAADATTKLLL-----ATDDGETIETVGIPTDQRLTVCISSQVGCPMA 115

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG   L R+L   EI+ QVL  R                  ++ R+ S+IV MGM
Sbjct: 116 CRFCATGKSGLQRSLATHEIVDQVLSVRE-----------------AMDRRPSHIVFMGM 158

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---VMLA 240
           GEPL N   V +++   +  +G+   +RRIT+ST G    +P +A +  E++G     LA
Sbjct: 159 GEPLLNSAAVLETIRCLNTDLGIG--QRRITVSTVGVPKTLPQLAELAMEKLGRAQFTLA 216

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +  LR  L+P    YP + L+D CRHY  L+  RR++FEY++L  +ND P  A 
Sbjct: 217 VSLHAPNQQLREELIPTAHAYPYDDLLDDCRHYLDLT-GRRVSFEYILLGELNDHPEHAA 275

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L   + G  + +NLI +NP    E+     + I  F   ++R G +  +R  RGLD  A
Sbjct: 276 ELADRVGGFQSHVNLIAYNPIEEEEFKRPTTQRIEAFRRVLERRGIAVSLRASRGLDQNA 335

Query: 361 ACGQLK 366
           ACGQL+
Sbjct: 336 ACGQLR 341


>gi|303237669|ref|ZP_07324229.1| 23S rRNA m2A2503 methyltransferase [Prevotella disiens FB035-09AN]
 gi|302482121|gb|EFL45156.1| 23S rRNA m2A2503 methyltransferase [Prevotella disiens FB035-09AN]
          Length = 346

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 196/369 (53%), Gaps = 29/369 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+GM   EL+    ++G+P         Q+ KW+Y + +     M++IS++ R  L 
Sbjct: 5   KKPLVGMNLLELKNVAKELGMPA----FTGGQMAKWLYTQHVTSIDEMTNISKDNREKLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++++I   + +D + S DGT K+L  FP     G   +E+VYIP+++R TLCVSSQVGC 
Sbjct: 61  ENYTIGCKKHIDAQYSKDGTIKYL--FPTD--NGKF-VESVYIPDENRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLT  +IL Q+          P  E            K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGNLTTADILNQIY-------SLPERE------------KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N+DNV K+  + +     ++S +RIT+S+ G    + R  EE    +AIS+H 
Sbjct: 157 GQGEPMDNYDNVLKTTQLLTADYAYAWSPKRITVSSIGIKSKLKRFLEESDCHVAISMHN 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              + R  ++P  +   +  +++  R+Y   S+ RR++FEY++ KG NDS   A  +IK+
Sbjct: 217 PIPEERIEVMPSEKAMSITEIVEMLRNYD-FSHQRRLSFEYIVFKGKNDSVDHAKAIIKL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++G+  + NLI F+  P       D K +  F   +   G  + IR  RG DI AACG L
Sbjct: 276 VEGLECRFNLIRFHTIPNVPLQGVDDKKMEEFRNYLTAHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSKRIPK 374
            +  K   K
Sbjct: 336 STAKKNANK 344


>gi|308234069|ref|ZP_07664806.1| 23S rRNA m(2)A-2503 methyltransferase [Atopobium vaginae DSM 15829]
 gi|328943466|ref|ZP_08240931.1| cfr family radical SAM enzyme [Atopobium vaginae DSM 15829]
 gi|327491435|gb|EGF23209.1| cfr family radical SAM enzyme [Atopobium vaginae DSM 15829]
          Length = 416

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 192/367 (52%), Gaps = 36/367 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  +  +  ++L   L  +G P      R  QI  W++ +  R F  M+++S+++R  L
Sbjct: 72  QKVEIRSLNHDQLTYELTSMGEPA----FRVKQIEAWLWQKNARSFDDMTNLSKKLRARL 127

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFP----ARCIGGPVEIETVYIPEKSRGTLCVSS 120
            + F++  P +V +++S DG+RK+LLRF     A C+G         +P K++  +CVS+
Sbjct: 128 KEKFALYSPALVSKQVSQDGSRKYLLRFQDGVMAECVG---------MPTKNKLAICVST 178

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG   L R+LT  EI  Q L    +  DF                +++
Sbjct: 179 QAGCAIGCVFCATGKAGLTRSLTGYEIYEQALF---IQDDFQ--------------MRVA 221

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
           + V+MG GEPL N++    +L + + ++GL    R +T+ST G +PNI +   E     L
Sbjct: 222 SAVLMGQGEPLTNYNASIFALKMMNSAIGLGVGARHLTISTCGILPNIIKFSHEKEQFTL 281

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+     R+ L+P  +++ L+ L D    Y   +  RR T+EY ++KG+ND+  + 
Sbjct: 282 AVSLHSAVQSTRDYLMPGVKRFNLQHLHDTMNLYVE-ATGRRPTYEYALIKGVNDTDEEL 340

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L     G  A +NLI  N      +L + +K    F + +KR G  + IR  RG DI 
Sbjct: 341 AALCDFCAGTLAHVNLIQLNKIDDSPFLPTSEKRAEHFVKTLKRFGVEATIRHSRGADID 400

Query: 360 AACGQLK 366
           AACGQLK
Sbjct: 401 AACGQLK 407


>gi|189500366|ref|YP_001959836.1| radical SAM enzyme, Cfr family [Chlorobium phaeobacteroides BS1]
 gi|254807163|sp|B3EJF5|RLMN_CHLPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|189495807|gb|ACE04355.1| radical SAM enzyme, Cfr family [Chlorobium phaeobacteroides BS1]
          Length = 362

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/381 (33%), Positives = 204/381 (53%), Gaps = 34/381 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K ++    R+EL + +  +G P      R  QI +W++   + DF+ M +IS  +R  L+
Sbjct: 5   KTNIKAYTRQELRDTIAALGEPA----YRADQIHRWLFSDWVTDFEKMKNISASLREELS 60

Query: 66  QHFSI----IYPEIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           + + I       E ++E+ +S   T K+L+      +     +ETV IP   R T+CVSS
Sbjct: 61  RRYVIPSCSFENEAIEERSVSAPETSKFLV-----GLHDDEMVETVLIPSPDRHTVCVSS 115

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC L C+FC TG     RNL A EI+ QVLL    LGD             S    ++
Sbjct: 116 QVGCPLRCTFCATGYMGFTRNLLASEIVEQVLLVNERLGD------------RSPDNHVT 163

Query: 181 NIVMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           N+V MGMGEPL N +NV  ++ ++ + S   S S++RIT+ST G +P I  +    + + 
Sbjct: 164 NMVFMGMGEPLLNLNNVFDAIETLTNQSYNFSLSRKRITISTVGLIPQIGELARSGLSIK 223

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLHA   + R  L+P+ +++ LE L  A   Y  +     +T  Y++++G+ND+ +D
Sbjct: 224 LAISLHAADQEKRTSLIPVAKEHTLEELRHALHEYADMVK-EPVTLVYMLIEGVNDADQD 282

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
           A+NLI+  +G   KINLI +N     ++  + ++++D   F   +  +G    +R  +G 
Sbjct: 283 AINLIRFAQGFLCKINLIDYNCIVNVKFNPVKAEKRD--RFIHTLVNAGVHVTVRKSQGA 340

Query: 357 DILAACGQLKSLSKRIPKVPR 377
            I AACGQL +L K+     R
Sbjct: 341 SIDAACGQL-ALQKKNKTASR 360


>gi|315453551|ref|YP_004073821.1| putative radical-SAM-proteins [Helicobacter felis ATCC 49179]
 gi|315132603|emb|CBY83231.1| Putative radical-SAM-proteins [Helicobacter felis ATCC 49179]
          Length = 356

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 189/342 (55%), Gaps = 32/342 (9%)

Query: 35  TSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR-FP 93
             Q + W+Y R       M ++    +  +   F +   E+++ + S D + K+L + F 
Sbjct: 29  AKQFYAWLYQR-YASLDQMHNLPHAFKEAVCADFEVRPLEVLECQQSADKSVKYLFKTFD 87

Query: 94  ARCIGGPVEIETVYI--------PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145
                     E+VY+          + + TLC+S Q+GC + C FC T     VRNL A 
Sbjct: 88  GH------SFESVYMVMREAREGEAQEKITLCLSCQIGCKVGCVFCATAKGGFVRNLNAG 141

Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           EI+ QV+  +           +E    P+ G    N+V MGMGEPL NF+ V  +L I S
Sbjct: 142 EIVEQVVALKR-------AHQLE----PTRG---INLVFMGMGEPLHNFEQVVHALEILS 187

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLE 264
              GL+ + RRIT+STSG VP +  +G   +GV LAISLHAV++ LR+ L+PIN+ Y L+
Sbjct: 188 THEGLNIAPRRITISTSGVVPALQTLGALNLGVQLAISLHAVNDSLRSKLMPINKVYNLQ 247

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
            LI+A + +P L   +R+ FEY+M+K +NDS   A  L+++L G+ AKINLIP+N  P  
Sbjct: 248 ALINALKAFP-LDKRKRVMFEYLMIKDVNDSLSHAKELLRLLNGLKAKINLIPYNSTPHS 306

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           ++   + + +  F++ + + G    IR  +G DI AACGQL+
Sbjct: 307 KFERPELERVQAFADFLNQKGLLCTIRISKGQDIAAACGQLR 348


>gi|23100552|ref|NP_694019.1| hypothetical protein OB3097 [Oceanobacillus iheyensis HTE831]
 gi|81745262|sp|Q8ELW7|RLMN_OCEIH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|22778785|dbj|BAC15053.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 355

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 212/377 (56%), Gaps = 32/377 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K S+ G+  E+L++ L++ G      R R  Q+W W+Y + I  F  M++++Q    L
Sbjct: 1   MSKSSIYGLTYEKLKDWLIEHGEK----RFRAEQVWNWLYKKRINSFDEMNNVNQSAIQL 56

Query: 64  LNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  +F +  +  EI  E  S DGT K+L +     +     IETV +      ++CV++Q
Sbjct: 57  LKDNFVLHTMGEEIRQE--SQDGTIKFLFKLEDGNL-----IETVLMRFHYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  +  R+L++ E++ Q++  +  L D  G +D           ++S+
Sbjct: 110 VGCNIGCTFCASGLLRKSRDLSSGEVVEQIMNVQKHL-DERGEKD-----------RVSH 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           IV+MG+GEP  N++N+   L   +D  GL+   R IT+STSG    I    ++ I V LA
Sbjct: 158 IVVMGIGEPFDNYNNLMDFLYTVNDDRGLNIGARHITVSTSGLAHKIYEFADDPIQVNLA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +++LR  ++ INR +P++ L+ +  +Y    N RRIT+EY+ML  +ND  ++A+
Sbjct: 218 ISLHAPNDELRTKIMKINRAFPIDKLMKSVDYYLQKKN-RRITYEYIMLDDVNDHKKEAI 276

Query: 301 NLIKILKGIP--AKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L  ++K     A +NLIP+N      +Y  S  ++I  F E +   G +  +R   G D
Sbjct: 277 ELANLIKNHRHLAYVNLIPYNTVDEHIDYRRSKSENIQAFYETLTELGINCGVRWENGAD 336

Query: 358 ILAACGQLKSLSKRIPK 374
           I AACGQL+  SK+I K
Sbjct: 337 IDAACGQLR--SKQIKK 351


>gi|256026775|ref|ZP_05440609.1| florfenicol resistance protein [Fusobacterium sp. D11]
 gi|289764771|ref|ZP_06524149.1| radical SAM family enzyme [Fusobacterium sp. D11]
 gi|289716326|gb|EFD80338.1| radical SAM family enzyme [Fusobacterium sp. D11]
          Length = 358

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 203/376 (53%), Gaps = 33/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +++ + +EEL E L+ +G+ + + +    +++ W++ +  R F  M+++S + R +L
Sbjct: 4   EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFGEMTNLSLKDREIL 59

Query: 65  NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117
            +   I +  ++  +IS  D T K+L     +       IETV +  K       R TLC
Sbjct: 60  KEKTYIPFFNLLKHQISKIDRTEKFLFELEDKGT-----IETVLLRHKDSKNKEIRNTLC 114

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC + CSFC TG    +RNL+  EIL Q+      L                 G 
Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTIERRL--------------RKKGE 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            ++N+V MGMGEPL N DN+ K+LSI S+  G++ SKR+IT+STSG V  I ++  ++I 
Sbjct: 161 TLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LAISLH+  N+ R+ ++P+N+ +PLE L      Y   +  RRITFEY+++   N S 
Sbjct: 221 IELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEYQKQT-KRRITFEYILIDNFNISE 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
            DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R  +G
Sbjct: 280 TDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRKVNVTLRQEKG 339

Query: 356 LDILAACGQLKSLSKR 371
            DI  ACGQL+  +K+
Sbjct: 340 SDIDGACGQLRQRNKK 355


>gi|158337109|ref|YP_001518284.1| radical SAM protein [Acaryochloris marina MBIC11017]
 gi|205829656|sp|B0C9F4|RLMN_ACAM1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|158307350|gb|ABW28967.1| radical SAM enzyme, Cfr family [Acaryochloris marina MBIC11017]
          Length = 351

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 181/335 (54%), Gaps = 27/335 (8%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+ +WIY +G+     ++ + ++ R  +     +   +I     + DGT K+LL+  
Sbjct: 34  RGQQVHQWIYQKGVHSLSDITVLPKQWRTEIAD-IPVGRSQIHHRSAAQDGTVKYLLKLA 92

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              I     IETV IP + R T+CVSSQVGC + C FC TG  +  RNL   EI+ QVL 
Sbjct: 93  DGQI-----IETVGIPTQKRLTVCVSSQVGCPMGCDFCATGKGEYQRNLACHEIVDQVLT 147

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
            +         ED +        +++ N+V MGMGEPL N + V  ++   +  +G+   
Sbjct: 148 VQ---------EDFQ--------QRVGNVVFMGMGEPLLNLEQVLAAVRSLNQDVGIG-- 188

Query: 214 KRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           +R +T+ST G    I ++ + ++ + LA+SLHA +  +R  LVP  + YPLE L+  CR 
Sbjct: 189 QRSLTVSTVGIPKQILKLAQHQLQITLAVSLHASNQRIRTQLVPSAKHYPLEKLLKDCRA 248

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y      RR+TFEY++L G+ND    AL L   L+G  + +NLIP+NP    +Y    QK
Sbjct: 249 YV-TQTGRRVTFEYIVLSGVNDQTEHALELAHHLRGFQSHVNLIPYNPISEVDYQRPTQK 307

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +  F   ++    ++ IR  RGLD  AACGQL++
Sbjct: 308 QLQQFLNSLQSQHITASIRRSRGLDKDAACGQLRA 342


>gi|291557812|emb|CBL34929.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium siraeum V10Sc8a]
          Length = 338

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/371 (32%), Positives = 208/371 (56%), Gaps = 37/371 (9%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  ++ + +EELEE +L +G      + R  QI+ W+++  + +F  M+++S ++R  
Sbjct: 1   MEKTDILSLSKEELEEKILAMG----EKKFRAGQIYDWLHINKVEEFSKMTNLSAQLREK 56

Query: 64  LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L+  F I   +I    +S  D T K+L       +    ++ETV +  K   ++C+S+QV
Sbjct: 57  LDDIFWINSLKIQKRLVSDIDNTVKYLY-----GLSDGEKVETVLMEYKHGNSICISTQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +     VRNL   E+LLQ+  +                     GRKI+++
Sbjct: 112 GCKMGCKFCASTKAGFVRNLEPSEMLLQIYESER-----------------DSGRKINHV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           V+MG+GEPL N DNV K L +  A D M L    R +++ST G V  I  + + ++G+ L
Sbjct: 155 VLMGIGEPLDNLDNVVKFLRLLSAKDDMSL----RHVSVSTCGLVNRIYELADLKLGITL 210

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           ++SLHA +N+LR+ ++PIN ++ +E L++AC++Y   +  RRI++E+ ++ G+ND+ + A
Sbjct: 211 SVSLHAPTNELRSSIMPINDRFRIEELMEACKYYFN-TTGRRISYEFALIDGVNDNRQSA 269

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+K+LKG    +NLIP N     E +      +  + + +   G ++ +R   G DI 
Sbjct: 270 DALLKLLKGQNCHVNLIPVNEIK--EGVFKRSASVEKYKQMLIDGGLNATVRRTLGADIS 327

Query: 360 AACGQLKSLSK 370
           AACGQL+  +K
Sbjct: 328 AACGQLRRDNK 338


>gi|56752343|ref|YP_173044.1| ribosomal RNA large subunit methyltransferase N [Synechococcus
           elongatus PCC 6301]
 gi|81561318|sp|Q5MZJ6|RLMN_SYNP6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|56687302|dbj|BAD80524.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 351

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 196/366 (53%), Gaps = 37/366 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    EL++ ++  G P      R  Q+++W+Y R I +   +S   +  R  L Q  
Sbjct: 7   LLGRSLPELQDWVVAQGQPS----YRAKQLYQWLYERSIHNLAEISVFPKAWRQSL-QAV 61

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            +   +IVD  +S  G+ K+LLR     I     IE V IP   R T+CVSSQ+GC++ C
Sbjct: 62  PVGRSQIVDRSVSPSGSIKYLLRLHDGEI-----IEAVGIPSGDRLTVCVSSQLGCAMAC 116

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     R+L   EI+ QVL  +         ED +        +++SNIV MGMG
Sbjct: 117 DFCATGKGGFRRHLAPHEIIDQVLTVQ---------EDWQ--------QRVSNIVFMGMG 159

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IGVMLAI 241
           EPL N D V  ++   +  +G+   +R IT+ST G   +I R+ E        +   LA+
Sbjct: 160 EPLLNLDAVLAAIRCLNQDIGIG--QRGITVSTVGIPGHIRRLAETKRVGDRPLQFTLAV 217

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +  +R+ L+P +R YP+  L+  CR Y  ++  RR+TFEY++L G+ND P  A  
Sbjct: 218 SLHAPNQAIRDRLIPSSRHYPITDLLQECRDYVQIT-GRRVTFEYILLAGLNDQPEQAEQ 276

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++L+G  + +NLIP NP    EY    +  +  F++ +++   +  +R  +GL   AA
Sbjct: 277 LAQLLRGFQSHVNLIPCNPIDEVEYQRPSKARVDAFADALRQQRVAVTVRWSKGLGADAA 336

Query: 362 CGQLKS 367
           CGQL++
Sbjct: 337 CGQLRA 342


>gi|182415989|ref|YP_001821055.1| radical SAM protein [Opitutus terrae PB90-1]
 gi|205829654|sp|B2A0B9|RLMN3_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 3;
           AltName: Full=23S rRNA m2A2503 methyltransferase 3
 gi|177843203|gb|ACB77455.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1]
          Length = 374

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 199/370 (53%), Gaps = 36/370 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ESL   +RE  E A             R SQI  W+Y +  R + GM+++ + +R  L+ 
Sbjct: 16  ESLTARLRERGEPAF------------RASQILDWVYKKRARSWDGMTNLPKPLRTWLDD 63

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK------SRGTLCVSS 120
            F ++   +V  K S D T K LL       G  +E   +  P++      SR T+C+S+
Sbjct: 64  TFDLMPATLVLNKQSADVTDKLLLELRD---GSLIETVIIRAPQEGVGQDHSRKTICIST 120

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C FC +G   L R+L+A EI+ Q+L           C   E  + P    +++
Sbjct: 121 QVGCAMGCVFCASGLAGLKRDLSAGEIVAQLLQV---------CYR-EDALTPRAHMELA 170

Query: 181 ---NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
              NIV+MGMGEPL N+D + ++L+I +   GL F  RRIT+STSG VP I ++ +E +G
Sbjct: 171 SFDNIVVMGMGEPLANYDALIRALTILNADWGLGFGARRITVSTSGLVPKILQLADEPLG 230

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LAISLH  ++++R  ++P+N+ +PL  L+ A + +    + R IT E++++ G+NDS 
Sbjct: 231 FRLAISLHGATDEVREKIMPVNKAFPLAKLLPAVKAFSE-KHGRMITLEFILIDGVNDSL 289

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L  I   + A +NLIP+N   G  +          F++ ++    S  +R  +G 
Sbjct: 290 EQAEKLRDIALDLHAHVNLIPYNTVEGLAWKRPSITRQERFADVLRARRVSVTLRREKGH 349

Query: 357 DILAACGQLK 366
           DI AACGQL+
Sbjct: 350 DIDAACGQLR 359


>gi|298377278|ref|ZP_06987231.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_19]
 gi|298265692|gb|EFI07352.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_19]
          Length = 334

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/358 (36%), Positives = 183/358 (51%), Gaps = 33/358 (9%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI- 70
           M  EEL+    ++ +P    +    Q+  WIY + I     M++I+   R LL   F I 
Sbjct: 1   MTLEELKGVASEVSLPAYAAK----QMADWIYKKKITRISEMTNIAVAKRALLEDSFEIG 56

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQVGCSLTCS 129
           +YP    +K S DGT K+L         GP   +E+VYIP   R TLCVSSQVGC + C 
Sbjct: 57  VYPPSEYQK-SKDGTIKYLYA------AGPGRFVESVYIPTDDRATLCVSSQVGCKMNCL 109

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG Q    NLTA +IL Q+                    +P     ++NIV MGMGE
Sbjct: 110 FCMTGKQGFTANLTANQILNQI------------------QSLPE-NDSLTNIVFMGMGE 150

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249
           PL N D + K L I +   G ++S +RIT+ST G    + R  EE    LA+SLH+    
Sbjct: 151 PLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVSLHSPYPM 210

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R  L+P+ + +P   +ID  + Y   S+ RR++FEY++ K +NDS + A  L  +L GI
Sbjct: 211 ERLSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEALSCLLGGI 269

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           P ++NLI F+  P      SD   +  F + +   G    IR  RG DI AACG L +
Sbjct: 270 PCRVNLIRFHAIPNVSLETSDIAKMEAFRDFLNAKGVVCTIRASRGEDIFAACGMLST 327


>gi|154505950|ref|ZP_02042688.1| hypothetical protein RUMGNA_03492 [Ruminococcus gnavus ATCC 29149]
 gi|153793968|gb|EDN76388.1| hypothetical protein RUMGNA_03492 [Ruminococcus gnavus ATCC 29149]
          Length = 346

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 118/363 (32%), Positives = 198/363 (54%), Gaps = 29/363 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +     E+L   + +IG      + R  QI++W++V+    F+ M+++S+ +R  L 
Sbjct: 2   KKDIRAYTYEQLAAEMEQIG----EKKFRAKQIYEWLHVKLADSFEEMTNLSKALREKLE 57

Query: 66  QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             + I+  ++++ +IS  D T K+L +       G V +E+V +  K   ++C+SSQVGC
Sbjct: 58  AEYEILPVKMLERQISKIDATNKFLFQLS----DGNV-VESVLMRYKHGNSVCISSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    L RNL+  E+L Q+   + + G+                 ++SN+V+
Sbjct: 113 RMGCRFCASTIGGLERNLSPSEMLGQIYQIQKITGE-----------------RVSNVVV 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
           MG GEP+ N++N    + + +D  GL  S+R +T+ST G VP I  +  E + + LA+SL
Sbjct: 156 MGTGEPMDNYENFLTFVRMLTDEHGLHISQRNLTVSTCGIVPKIRELAMEHLQITLALSL 215

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H  + + R  L+P+  KY L+ ++ AC  Y      RR+TFEY ++ G+ND+  DA  LI
Sbjct: 216 HGSTQEKRKQLMPVANKYDLQEVLKACDFYFQ-ETGRRVTFEYSLVHGVNDTQEDAEELI 274

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ILK     +NLIP NP    ++    +K+ + F   +++SG +  IR   G DI  ACG
Sbjct: 275 GILKSRNCHLNLIPVNPIKERDFQQPSRKNALNFKNKLEKSGINVTIRREMGADIDGACG 334

Query: 364 QLK 366
           QL+
Sbjct: 335 QLR 337


>gi|312879541|ref|ZP_07739341.1| 23S rRNA m(2)A-2503 methyltransferase [Aminomonas paucivorans DSM
           12260]
 gi|310782832|gb|EFQ23230.1| 23S rRNA m(2)A-2503 methyltransferase [Aminomonas paucivorans DSM
           12260]
          Length = 635

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 131/350 (37%), Positives = 186/350 (53%), Gaps = 30/350 (8%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78
           E L ++G P    R R  QI KWIY + +  F+ M+D+S E+R  L   +S   PE+  E
Sbjct: 15  ERLAELGQP----RFRADQICKWIYRKRVFRFEDMTDLSLELREKLQALWSCGIPEVAAE 70

Query: 79  KIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
           ++S  DGTRK L R     +G    +E+V + ++ R T C+S+QVGC L C+FC TG   
Sbjct: 71  QVSRKDGTRKLLWR-----LGDGQSVESVLLDQEGRRTACISTQVGCPLGCAFCATGQSG 125

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
            VRNL+  EI+ Q L   +  G+                  +  +V MGMGEPL N D V
Sbjct: 126 FVRNLSPGEIVGQFLGMEARYGE------------------LQGLVTMGMGEPLLNADAV 167

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVP 256
             +L             R ITLST G VP I A     +GV LA+SLHA ++ LR+ LVP
Sbjct: 168 FLALGALKHPKMRGLGVRHITLSTCGVVPGIRALAASGLGVRLAVSLHAANDALRDRLVP 227

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
           +N +YPL  L +A   Y  ++   RI+ EY + +G+ND P  A  L + L+G+   +NLI
Sbjct: 228 LNAQYPLAELREALVDYQEVTRD-RISIEYALFEGVNDDPSQARQLGEYLRGLSVFVNLI 286

Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           P N      Y    +  +  F   +++ G+ + +R  RG DI AACGQL+
Sbjct: 287 PGNRSLEDAYRRPPRYRVEQFQGILEQQGFETAVRVERGSDIDAACGQLR 336


>gi|88807336|ref|ZP_01122848.1| hypothetical protein WH7805_12333 [Synechococcus sp. WH 7805]
 gi|88788550|gb|EAR19705.1| hypothetical protein WH7805_12333 [Synechococcus sp. WH 7805]
          Length = 351

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 192/370 (51%), Gaps = 37/370 (10%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HL 63
           + ++L+G+   ELE    +  + Q     R  Q+  W+Y +G RD Q ++ + +  R  L
Sbjct: 6   QSKTLLGLGSSELE----RWAVTQGQSAFRGRQLHDWLYAKGARDLQEITVLPKSWRASL 61

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +   SI   +  D K++ D T K LL            +ETV IP   R T+CVSSQVG
Sbjct: 62  QDSGVSIGRLKEQDRKVAADATTKLLL-----ATDDGETLETVGIPTDQRLTVCVSSQVG 116

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG   L R+L   EI+ QVL  R ++                  R+ S++V
Sbjct: 117 CPMACRFCATGKGGLQRSLYTHEIVAQVLSVREVM-----------------QRRPSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG--- 236
            MGMGEPL N + V  S+   +D +G+   +RRIT+ST G    +P +A +  E +G   
Sbjct: 160 FMGMGEPLLNIEAVLDSIRCLNDDLGI--GQRRITVSTVGVPRTLPKLAELAMERLGRAQ 217

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LA+SLHA +  LR  L+P    YP + L+D CRHY  ++  RR++FEY++L G+ND  
Sbjct: 218 FTLAVSLHAPNQTLREELIPTAHAYPYDALLDDCRHYLAIT-GRRVSFEYILLGGLNDHA 276

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L   + G  + +NLI +NP    E+    +  I  F   ++  G +  +R  RGL
Sbjct: 277 AHAEELADRVGGFQSHVNLIAYNPIEEEEFQRPTRDRIEGFRRVLEGRGVAVSLRASRGL 336

Query: 357 DILAACGQLK 366
           D  AACGQL+
Sbjct: 337 DQDAACGQLR 346


>gi|154685991|ref|YP_001421152.1| YloN [Bacillus amyloliquefaciens FZB42]
 gi|205829638|sp|A7Z4J5|RLMN_BACA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|154351842|gb|ABS73921.1| YloN [Bacillus amyloliquefaciens FZB42]
          Length = 363

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 189/340 (55%), Gaps = 21/340 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y + +  F  M+++S+ +R  L  +F +   +   ++ S DGT K+L   
Sbjct: 40  FRAAQIFEWLYEKRVSSFDEMTNLSKSLREKLESNFVLTTLKTAVKQTSQDGTMKFLFE- 98

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IETV +  +   ++CV++QVGC + C+FC +    L RNL A EI+ QV+
Sbjct: 99  ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 154

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             +  L +                 ++S++V+MG+GEP  NF+ +   L I +   GL+ 
Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG +P I    ++ + +  AISLHA + ++R+ L+PIN+ Y L  L++A +
Sbjct: 201 GARHITVSTSGIIPKIYDFADQKMQINFAISLHAPNTEIRSRLMPINKAYKLPDLMEAVK 260

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RRI+FEY +  G+ND    A  L ++LK +   +NLIP N  P  +Y+ + +
Sbjct: 261 YYIE-KTGRRISFEYGLFGGVNDQVEHAEELAELLKDVKCHVNLIPVNYVPERDYVRTPR 319

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             I  F + +K  G +  IR  +G DI AACGQL++  ++
Sbjct: 320 DQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLRAKERQ 359


>gi|86608506|ref|YP_477268.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123751708|sp|Q2JMN2|RLMN_SYNJB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|86557048|gb|ABD02005.1| radical SAM enzyme, Cfr family [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 352

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 184/353 (52%), Gaps = 32/353 (9%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79
           AL    + Q     R  Q+  WIY +GIR  + ++   +  R  + Q + +    IV   
Sbjct: 15  ALKDWAVAQGQPAYRGQQLHAWIYQKGIRSLEQVTVFPRAWREAV-QSYPVGRSRIVQRT 73

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
            + DGT K+LL      +     IETV IP   R T+CVSSQVGC + C FC TG     
Sbjct: 74  EARDGTVKFLLGLADGQL-----IETVGIPTAKRLTVCVSSQVGCPMACDFCATGKMGYR 128

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL   EIL QVL  +    DF              GR++S++V MGMGEPL N D V +
Sbjct: 129 RNLELHEILDQVLTVQE---DF--------------GRRVSHVVFMGMGEPLLNRDTVVQ 171

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPIN 258
           ++   +  +G+   +R ITLST G    IA + ++ + V LA+SLHA + DLR  L+P  
Sbjct: 172 AIRSLNQDIGI--GQRHITLSTVGVPRQIAWLAQQDLQVTLAVSLHAPNQDLRQRLIPSA 229

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKI 313
             YPL+ LI  CR Y  L   RR++FEY +L G+ND P  A  L ++L+     G+   +
Sbjct: 230 SHYPLDTLIQDCRDYM-LRTGRRVSFEYTLLSGVNDLPIHARQLAQLLQQASRSGVQLHV 288

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           NLIP+NP    +Y       +  F   +++    + +R  RGLD  AACGQL+
Sbjct: 289 NLIPYNPISEADYQRPHPTRVREFVRQLEQHQVRATVRQTRGLDGNAACGQLR 341


>gi|167747880|ref|ZP_02420007.1| hypothetical protein ANACAC_02609 [Anaerostipes caccae DSM 14662]
 gi|167652702|gb|EDR96831.1| hypothetical protein ANACAC_02609 [Anaerostipes caccae DSM 14662]
          Length = 354

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 196/352 (55%), Gaps = 27/352 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLL 90
           + R  QI++W + R       M+++ + ++  L + +     + V+  +S  DGTRK+L 
Sbjct: 23  KFRAKQIFEWFHKRLASSLDEMNNLPKNLKEKLQEKYEAAELKEVETYVSRIDGTRKYLF 82

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
           +     +     IE+V +  K   ++C+SSQ GC + C FC +    L RNL   E+L Q
Sbjct: 83  Q-----LNDGNTIESVLMKYKHGNSVCISSQAGCRMGCRFCASTLGGLDRNLLPSEMLGQ 137

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           +                   +    G ++SN+V+MG GEPL N++N+ + + + +D  GL
Sbjct: 138 IYY-----------------IQKDTGERVSNVVVMGTGEPLDNYENLLRFIRLLTDEKGL 180

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           + S+R +T+ST G VP I  + +E + + LAISLHA ++++R  L+P+  +Y +E L+ A
Sbjct: 181 NLSQRNLTVSTCGLVPKIRELADEKLQMTLAISLHASNDEMRKSLMPVANQYSMEDLLAA 240

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           C++Y   +  RRITFEY ++  +NDSP++A  L + L G P  +NLIP NP    ++  S
Sbjct: 241 CKYYFDRT-GRRITFEYSLVAEVNDSPQNAKELCRFLGGFPCHVNLIPVNPIKERDFRQS 299

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
             + +  F   ++++  +  IR   G DI AACGQL+   K++  V +QE++
Sbjct: 300 MPEFVNDFKNILEKNRVNVTIRREMGRDINAACGQLR--RKKLNSVEKQEIR 349


>gi|294056045|ref|YP_003549703.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM
           45221]
 gi|293615378|gb|ADE55533.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM
           45221]
          Length = 351

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 114/297 (38%), Positives = 168/297 (56%), Gaps = 23/297 (7%)

Query: 74  EIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
           E   E  S DG T K+LL+     +    E+E+V +    R T C+SSQVGC++ C FC 
Sbjct: 69  EQTAETPSADGYTHKYLLK-----LADGAEVESVRMGFPGRFTACLSSQVGCAMGCVFCA 123

Query: 133 TGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
           TG     R L+A EI+ Q L + R L  DF              G ++ NIVMMGMGEPL
Sbjct: 124 TGQMGFSRQLSAGEIVAQALHVERRLREDF--------------GERLRNIVMMGMGEPL 169

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDL 250
            NF+ +  +L I +D+ GL+    R+ +ST G+VP I ++ +      LA+SLH  S++ 
Sbjct: 170 HNFEPLMDALDILTDTRGLNIGPARVAISTVGYVPGIRKLMQHAKRYSLAVSLHGASDEE 229

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R  L+PIN+++PL  L++ CR Y  +  AR + F + ++KG+NDS   A  L  +L+G+ 
Sbjct: 230 RGKLIPINKRWPLAELLETCREYSQVKKAR-VFFAWTLIKGVNDSDDHAQRLAALLQGMD 288

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           A +NLIP NP         ++  +  F E I+ +G  S +R  RG+D+ A CGQLK+
Sbjct: 289 AHVNLIPLNPTDDFSGEAPEEARVRAFQEIIQAAGLPSTVRQRRGIDVAAGCGQLKA 345


>gi|169349817|ref|ZP_02866755.1| hypothetical protein CLOSPI_00555 [Clostridium spiroforme DSM 1552]
 gi|169293385|gb|EDS75518.1| hypothetical protein CLOSPI_00555 [Clostridium spiroforme DSM 1552]
          Length = 342

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 184/336 (54%), Gaps = 24/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q++ W+Y +  R F  MSD+S+E+R+ L   F+    +I ++++S DGT K+L   
Sbjct: 24  FRAKQVFSWLYQKDARSFDDMSDLSKELRNSLKDEFNFDILKIKEKQVSRDGTIKYLFEL 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               + G + IE+V +      +LCV+SQVGC++ C FC +G     R+L+  EI+ Q++
Sbjct: 84  ----LDGSL-IESVLMIHDYGKSLCVTSQVGCNMKCKFCASGLLNKQRDLSPGEIVSQII 138

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                             +     ++IS++V+MG GEP  N+DNV   + I +   GL+ 
Sbjct: 139 -----------------KIQQDTNQRISHVVVMGTGEPFDNYDNVMDFVRIINHPNGLAI 181

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+ST G +  I R  +E I   LAISLHA ++++RN L+PIN+ YP++ L     
Sbjct: 182 GARHITISTCGLIKGIERYSDEGIQTNLAISLHAPNDEIRNELMPINKIYPMDKLRQVVS 241

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y   +N RR+TFEY++LK IND    A  L   L+G+ A +NLIP+N      Y  S +
Sbjct: 242 DYIDKTN-RRVTFEYILLKDINDDIIYARQLAHYLRGLNAYVNLIPYNSVDEHGYQPSKK 300

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +    F   + R   +  +R   G DI  ACGQL++
Sbjct: 301 EQAELFKSELLRLHINVTMRKEHGRDIDGACGQLRA 336


>gi|257451432|ref|ZP_05616731.1| florfenicol resistance protein [Fusobacterium sp. 3_1_5R]
 gi|257466897|ref|ZP_05631208.1| florfenicol resistance protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918044|ref|ZP_07914284.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|317058012|ref|ZP_07922497.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
 gi|313683688|gb|EFS20523.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
 gi|313691919|gb|EFS28754.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 349

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 199/372 (53%), Gaps = 28/372 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K +L+ + ++EL E L+  G+ + + +    +++ W++ +  R+ Q M+++S + R +
Sbjct: 1   MEKLNLLDLSKKELTEFLVAEGMKKFYGK----EVFVWLHKKFARNIQEMTNLSLQNREI 56

Query: 64  LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQ 121
           L +   I Y  ++  ++S  D T K+L +      G    IETV +  +  R TLC+SSQ
Sbjct: 57  LEEKTYIPYLNLLKHQVSKIDKTEKFLFQLED---GNT--IETVLLRHRDQRNTLCISSQ 111

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + CSFC TG    VRNL   EIL QV      L                 G K++N
Sbjct: 112 VGCPVKCSFCATGQDGFVRNLRVSEILNQVYTVERRLN--------------KRGEKLTN 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLA 240
           +V MGMGEPL N + + K+L I S   G+  SKRRIT+STSG VP I R+  E++ V LA
Sbjct: 158 LVFMGMGEPLINIEALLKALEILSSEEGICISKRRITISTSGIVPAIERILMEKVPVELA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLH+  N+ R+ ++PIN+ YPLE L      Y      RR+TFEY+++K  N S  DA 
Sbjct: 218 VSLHSAINEKRDQIIPINKAYPLEDLAAVLGEYQR-QTKRRLTFEYILIKDFNVSEGDAN 276

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDIL 359
            L          +NLIP NP          +K I  F + +K     +  +R  +G DI 
Sbjct: 277 ALADFAHQFDHVVNLIPCNPVADTGLERPSEKKIERFYDYLKNVRKVNVSLRQEKGTDID 336

Query: 360 AACGQLKSLSKR 371
            ACGQL+   ++
Sbjct: 337 GACGQLRQNQRK 348


>gi|269797912|ref|YP_003311812.1| radical SAM enzyme, Cfr family [Veillonella parvula DSM 2008]
 gi|269094541|gb|ACZ24532.1| radical SAM enzyme, Cfr family [Veillonella parvula DSM 2008]
          Length = 348

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 200/366 (54%), Gaps = 30/366 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   EEL+       I     + R  Q++ +IY R I DF+ M+   +++R  LN + 
Sbjct: 4   LLGKSLEELQSIFKTHNIQ----KFRAKQLFDYIYHRYIFDFEDMTQFPKDLRQWLNDNC 59

Query: 69  SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I  P ++ E I+ DG TRK L+    +       +E V + +    ++CVSSQVGC++ 
Sbjct: 60  VISLPTLITESIAPDGKTRKILVEMTDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +    L R+LT  EI+ QV++  +L  +                 +I ++V+MG 
Sbjct: 115 CVFCASTQGGLYRDLTVAEIIGQVVIFGALTKE-----------------EIHSVVVMGA 157

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N+DNV ++L +  D M  + S R++T+ST G+VPNI ++ +E + + LA+SLHA 
Sbjct: 158 GEPLQNYDNVLQALQLLHDPMICNISYRKMTISTCGWVPNIYKLADEALPITLALSLHAT 217

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N++R  ++P+  +Y L  ++DA ++Y   +  RR+TFEY+++  +N S  +A  L KI 
Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYN-TTQRRVTFEYILIDSVNASMDEAHALGKIC 276

Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           K  P   +NLIP N     E       ++ TF + +   G S  +R   G  I AACGQL
Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVSSYGVSVTVRKEMGDAIQAACGQL 336

Query: 366 KSLSKR 371
           K+   R
Sbjct: 337 KAAHGR 342


>gi|282900428|ref|ZP_06308378.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194741|gb|EFA69688.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 360

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 121/334 (36%), Positives = 179/334 (53%), Gaps = 27/334 (8%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+  WIY  G+     +S   +  R  +    SI    I  +  + DGT K+LL+  
Sbjct: 41  RGKQLHNWIYHHGVHKISDISVFPKTWREQVAD-VSIGRSSIDHQSFATDGTEKYLLQLA 99

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              I     IETV IP   R T+CVS+QVGC + C FC TG     RNL   EI+ QVL 
Sbjct: 100 DGEI-----IETVGIPSDKRLTVCVSTQVGCPMACDFCATGKGGFKRNLNRGEIVDQVL- 153

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                            V  +  +++S++V MGMGEPL N +NV  +L   +  +G+   
Sbjct: 154 ----------------TVQENFQQRVSHVVFMGMGEPLLNTENVILALKCLNQDLGIG-- 195

Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           +R +T+ST G    I ++ E  + V LA+SLHA +  LR  ++P  + YP+E L+  CR 
Sbjct: 196 QRSLTVSTVGIRDRIRQLAEHHLQVTLAVSLHAPNQKLREQIIPSAKTYPIEQLLAECRE 255

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y  ++  RR+TFEY++L G+ND P  AL L + L+G  + +NLIP+NP    +Y   ++ 
Sbjct: 256 YVEIT-GRRVTFEYILLAGVNDLPEQALELSQRLRGFQSHVNLIPYNPIQEADYQRPNRD 314

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            I  F   +++   +  IR  RGL++ AACGQL+
Sbjct: 315 RIHAFVNILQQQKIAVSIRYSRGLEVDAACGQLR 348


>gi|197302405|ref|ZP_03167461.1| hypothetical protein RUMLAC_01133 [Ruminococcus lactaris ATCC
           29176]
 gi|197298526|gb|EDY33070.1| hypothetical protein RUMLAC_01133 [Ruminococcus lactaris ATCC
           29176]
          Length = 351

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 191/336 (56%), Gaps = 25/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLR 91
            R  Q+++W++V+   DF  M+++S+ +R  L + + I+  ++++ +IS  DGT K+L +
Sbjct: 25  FRAKQVYEWLHVKLADDFDEMTNLSKALREKLKEEYVILPVKMLERQISQIDGTNKFLFQ 84

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                  G V +E+V +  K   ++C+SSQ GC + C+FC +    L RNL++ E+L Q+
Sbjct: 85  L----YDGNV-VESVLMRYKHGNSVCISSQAGCRMGCAFCASTIGGLQRNLSSSEMLGQI 139

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
              + +  +                 ++SN+V+MG GEPL N++N    + + +D  GL+
Sbjct: 140 YQIQKITQE-----------------RVSNVVVMGTGEPLDNYENFLNFVHLLTDEHGLN 182

Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            S+R +T+ST G VP I  + +E + + LA+SLH  + + R  L+P+  KY L  ++DAC
Sbjct: 183 ISQRNVTVSTCGIVPKILELAKEHLQITLALSLHGSTQEKRKRLMPVANKYHLPEVLDAC 242

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
             Y      RR+TFEY ++ G+ND+  DA  L  +LK     +NLIP NP    +++   
Sbjct: 243 DTY-FRETGRRVTFEYSLVHGVNDTEEDARELTALLKPRNCHLNLIPVNPVRERDFVRPS 301

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +K+ + F   +++SG +  IR   G DI  ACGQL+
Sbjct: 302 RKNALNFKNKLEKSGINVTIRREMGSDIDGACGQLR 337


>gi|210634763|ref|ZP_03298291.1| hypothetical protein COLSTE_02218 [Collinsella stercoris DSM 13279]
 gi|210158703|gb|EEA89674.1| hypothetical protein COLSTE_02218 [Collinsella stercoris DSM 13279]
          Length = 348

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 192/354 (54%), Gaps = 30/354 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL++ + ++G P      R  Q+ +WI+ + +  F  M+++   +R  L++ FS   P 
Sbjct: 16  EELQDLVKELGQPA----FRAKQLNEWIHDKNVCSFDEMTNLPAALREKLSERFSFNVPV 71

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
            + +++S DG+RK+LL+F        V +ETV +P +++  +C+SSQ GC++ C+FC TG
Sbjct: 72  ELVKQVSKDGSRKYLLQF-----SDGVSVETVGMPNRNKLAVCISSQAGCAMGCAFCATG 126

Query: 135 TQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
              L R+LTA+E++ QVL +AR    DF              G +++++V MG GEP  N
Sbjct: 127 LAGLSRSLTAQEMVDQVLHVAR----DF--------------GERVTSVVFMGQGEPFAN 168

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252
           FD   ++L I +D  GL+   R +T+ST G +P I R  E      LAISLH+     RN
Sbjct: 169 FDATVQALRILNDPDGLAIGARHLTVSTCGVIPGIRRFAELPEQFTLAISLHSAIQGTRN 228

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            L+P  +KY L  L +A + Y      RR T+E+ M+ GIND+  +   L+    G    
Sbjct: 229 QLMPGVKKYTLLRLHEAIQLYVE-KTGRRPTYEFAMIDGINDTSPEMQALVDFCAGTLCH 287

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +NLI  N  P   +  S  + + +    +   G  + IR  RG DI AACGQLK
Sbjct: 288 VNLIQLNNIPDSPFRPSPIEKVESLQRRLTMHGVETTIRNSRGSDIDAACGQLK 341


>gi|307565075|ref|ZP_07627588.1| radical SAM enzyme, Cfr family [Prevotella amnii CRIS 21A-A]
 gi|307346244|gb|EFN91568.1| radical SAM enzyme, Cfr family [Prevotella amnii CRIS 21A-A]
          Length = 347

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 194/368 (52%), Gaps = 29/368 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  L+G    EL++    +G+P         QI +W+Y++ I+    M++IS+  R  
Sbjct: 6   IEKLPLLGKTLFELKQIAKDLGLPA----FAGKQIAEWLYIKHIKSIDEMTNISKANREK 61

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L++ ++I     +D + S DGT K+L  FP         +ETVYIP+  R TLCVSSQVG
Sbjct: 62  LSKVYTIGCKAPIDAQYSKDGTIKYL--FPTE---EDKFVETVYIPDNDRATLCVSSQVG 116

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NL+  +IL Q+          P  E            K++NIV
Sbjct: 117 CKMNCLFCQTGKQGFEGNLSVTDILNQIY-------SLPERE------------KLTNIV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MG GEP+ N DNV ++  I +     ++S +RIT+S+ G    + R  +E    +AIS+
Sbjct: 158 FMGQGEPMNNIDNVLRTTEIMTAEYAYAWSPKRITVSSVGVKNKLKRFLDESQCQVAISM 217

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+   + R  L+P  R   ++ +I+   +Y   S+ RR++FEY++  G NDS   A  +I
Sbjct: 218 HSPLEEQRKELMPAERAMSIKEVINLLHNY-DFSHQRRLSFEYIVFGGKNDSLEHAKAII 276

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++KG+  ++NLI F+  P      SD   +  F + + R G  + IR  RG DI AACG
Sbjct: 277 NLVKGLECRVNLIRFHQIPNVPLKGSDISTMEHFRDYLTRHGVFTTIRASRGQDIFAACG 336

Query: 364 QLKSLSKR 371
            L +  K+
Sbjct: 337 LLSTAKKK 344


>gi|254415410|ref|ZP_05029171.1| radical SAM enzyme, Cfr family [Microcoleus chthonoplastes PCC
           7420]
 gi|196177885|gb|EDX72888.1| radical SAM enzyme, Cfr family [Microcoleus chthonoplastes PCC
           7420]
          Length = 359

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 129/363 (35%), Positives = 188/363 (51%), Gaps = 31/363 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+G    EL + + + G P      R  Q+  WIY +G R    +S  S+  R  L 
Sbjct: 24  KTPLLGASLAELTQWVEQQGQPA----YRGRQLHNWIYQKGARRLSEISVFSKSWRQALV 79

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I    +     + D T K+LLR     I     IETV IP  +R T+CVSSQVGC 
Sbjct: 80  D-VPIGRSTLHYRSQAPDRTVKYLLRLADGNI-----IETVGIPTANRLTVCVSSQVGCP 133

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG     RNL   EI+ QVL  +    DF              G+++SN+V M
Sbjct: 134 MACDFCATGKGGFTRNLQPHEIVDQVLTVQE---DF--------------GQRVSNVVFM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           GMGEPL N + V  ++   +  +G+    R  T+ST G    I ++ E ++ +  A+SLH
Sbjct: 177 GMGEPLLNLEGVLAAVRSLNQDIGIGM--RSQTISTVGIRDRIRQLAEHKLQLTFAVSLH 234

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +  LR  L+P  ++YPL  L+  CR Y  ++  RR+TFEY++L G+ND P   + L +
Sbjct: 235 ASNQQLREQLIPSAKRYPLTDLLQECRDYVKIT-GRRVTFEYILLAGLNDQPEHGIELAQ 293

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            L+G  + +NLIP+NP    +Y     + I  F E +K+   +  +R  RGL+  AACGQ
Sbjct: 294 HLRGFQSHVNLIPYNPISEVDYQRPSPRRIQAFVETLKQHNIAVSVRRSRGLEKDAACGQ 353

Query: 365 LKS 367
           L++
Sbjct: 354 LRA 356


>gi|317056479|ref|YP_004104946.1| radical SAM enzyme, Cfr family [Ruminococcus albus 7]
 gi|315448748|gb|ADU22312.1| radical SAM enzyme, Cfr family [Ruminococcus albus 7]
          Length = 348

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 185/337 (54%), Gaps = 26/337 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-KISCDGTRKWLL 90
           + R  QI++W++V+ +  F  M+++S ++R  L + F +    IV   + + D T K+L 
Sbjct: 31  KFRAKQIFEWLHVKRVDSFDKMTNLSVQLREKLKKIFCLKSLFIVKRLESNTDNTVKYLY 90

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
           R P         +ETV +      T+CVS+QVGC + C FC +      R+L + EILLQ
Sbjct: 91  RLP-----DGNHVETVIMEYNYGNTVCVSTQVGCKMGCRFCASTIAGYKRDLASSEILLQ 145

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           +  A                     GRKI+  V+MG+GEP+ NFDNV   L + S   G 
Sbjct: 146 IYEA-----------------ARDSGRKITGAVLMGIGEPMDNFDNVVNFLKVLSCEQGT 188

Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           + S R +++ST G VP I  + E ++G+ L++SLHA +N  R+ ++P+N +Y +  L+ A
Sbjct: 189 NMSLRHVSVSTCGIVPRIYELAEMKLGITLSVSLHASNNKARSEIMPVNNRYDIGELMTA 248

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           CR+Y  ++  RRI+FEY ++ G ND   DA  L  +LK     +N+IP N      Y  S
Sbjct: 249 CRYYFKVT-GRRISFEYALIDGHNDKQSDAEELAALLKNFVCHVNIIPVNKIKERNYR-S 306

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           D+K    F + +++ G ++ +R   G DI AACGQL+
Sbjct: 307 DRKAADRFRQRLEKLGLNATVRRTLGSDIDAACGQLR 343


>gi|225164328|ref|ZP_03726595.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2]
 gi|224801062|gb|EEG19391.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2]
          Length = 375

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 198/374 (52%), Gaps = 41/374 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +SL   +RE  E+              R  QI  W+Y +  R +  M+++S+ +R  L +
Sbjct: 16  DSLTARLREHGEQTF------------RARQILDWVYKKRARSWDDMTNLSKALRAWLAE 63

Query: 67  HFSIIYPEIVDEKISCDG---TRKWLLRFPARCIGGPVEIETVYIP--------EKSRGT 115
            F +I   +V +K S D    T K LL      +G    +ETV I         E SR T
Sbjct: 64  TFVLIPAALVLDKQSHDAHDATDKLLLE-----LGDASLVETVIIRAPQDGVGLEHSRKT 118

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC--EDIEGMVIP 173
           +C+S+QVGC++ C+FC +G   L R+L A EI+ Q+L           C  ED       
Sbjct: 119 ICISTQVGCAMACAFCASGLAGLKRDLLAGEIVAQLLHV---------CYREDARTPRAR 169

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG- 232
           S      NIV+MGMGEPL N+D + ++L I +   GL    RRITLSTSG VP I ++  
Sbjct: 170 SELASFDNIVVMGMGEPLANYDAIVRALRIVNAEWGLGVGARRITLSTSGLVPKILKLAD 229

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E++G+ LAISLH  ++++R  ++P+N+ +PL  LI A + +    N R +T E+++++ +
Sbjct: 230 EDLGIRLAISLHGATDEVRERIMPVNKAFPLAKLIPAVKTFSE-KNGRMVTLEFILIEEV 288

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND+   A  L  I + + A +NLIP+N   G  +          F++ ++ +  S  +R 
Sbjct: 289 NDTIEQAEALCYIARDLHAHVNLIPYNTVEGLLWKRPSLTRQERFADVLRAARVSVTLRR 348

Query: 353 PRGLDILAACGQLK 366
            +G DI AACGQL+
Sbjct: 349 EKGHDIDAACGQLR 362


>gi|302671345|ref|YP_003831305.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
           B316]
 gi|302395818|gb|ADL34723.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
           B316]
          Length = 352

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 186/337 (55%), Gaps = 27/337 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY--PEIVDEKISCDGTRKWLL 90
            R  Q+++W++V+  RD+  M++I + ++    + F  +    E+V E    D T+K+L 
Sbjct: 33  FRAKQLYEWMHVKLARDYDEMTNIPKSLKEKCREMFDFVSLKSELVQES-KLDDTKKFLF 91

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
                 +     IE+V++  K   ++C+SSQVGC + C FC +    +VRNL   E+L Q
Sbjct: 92  -----ALSDGNMIESVFMKYKFGVSVCISSQVGCRMGCKFCASTIDGVVRNLLPSEMLDQ 146

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           +     +                  G K+  +V+MG GEPL N+DN+ + + + ++  GL
Sbjct: 147 IYAISRI-----------------TGEKVGRVVVMGSGEPLDNYDNLLRFIDLLTNEDGL 189

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           + S+R +T+ST G VPNI R+ ++ + + LA+SLHA +ND R  L+PI  KY +  ++DA
Sbjct: 190 NMSQRNLTVSTCGIVPNILRLADKNLAINLALSLHASNNDKRKELMPIANKYEIHEVLDA 249

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           CR Y      R++TFEY ++ G+ND+  DA  L  +L G    +NLIP NP    ++  +
Sbjct: 250 CRTYFD-KTGRQLTFEYSLVAGVNDTDEDARELTDLLSGFNCVVNLIPVNPIKERDFKPT 308

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           D+   + F   +++S  +  IR   G DI  ACGQL+
Sbjct: 309 DRAGALGFKNKLEKSRINVTIRREMGRDIDGACGQLR 345


>gi|229816215|ref|ZP_04446525.1| hypothetical protein COLINT_03265 [Collinsella intestinalis DSM
           13280]
 gi|229808223|gb|EEP44015.1| hypothetical protein COLINT_03265 [Collinsella intestinalis DSM
           13280]
          Length = 348

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 186/353 (52%), Gaps = 28/353 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           ++L+E + ++G P      R  Q+++W++ + +  F  M+++   +R  L + F+   P 
Sbjct: 16  DDLKELMKELGQPA----FRAKQLYEWVHEKNVCSFDEMTNLPAGLRQSLTETFAFKVPT 71

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
            + +++S DG+RK+LL F        V +ETV +P +++  +C+SSQ GC++ C+FC TG
Sbjct: 72  ELVKQVSKDGSRKYLLEF-----SDGVSVETVGMPNRNKLAVCISSQAGCAMGCAFCATG 126

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L R+LTA+E++ QVL                  V    G +++++V MG GEP  NF
Sbjct: 127 LAGLSRSLTAQEMVDQVL-----------------HVSRDFGERVTSVVFMGQGEPFANF 169

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNI 253
           DN  ++L + +D  GL+   R +T+ST G +P I R  E      LAISLH+     RN 
Sbjct: 170 DNTVEALRMLNDPEGLAIGARHLTVSTCGVIPGIRRFAELPEQFTLAISLHSAIQTTRNQ 229

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           L+P  +K+ L  L +A + Y      RR T+E+ M+ GIND+  +   L+    G    +
Sbjct: 230 LMPGVKKFTLLRLHEAIQEYVE-KTGRRPTYEFAMIDGINDTSPEMQALVDFCAGTLCHV 288

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           NLI  N  P   +  S    +      +   G  + IR  RG DI AACGQLK
Sbjct: 289 NLIQLNDIPDSPFRPSPIDKVEALQRRLTMHGVETTIRNSRGGDIDAACGQLK 341


>gi|238916657|ref|YP_002930174.1| hypothetical protein EUBELI_00719 [Eubacterium eligens ATCC 27750]
 gi|259491988|sp|C4Z523|RLMN_EUBE2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|238872017|gb|ACR71727.1| Hypothetical protein EUBELI_00719 [Eubacterium eligens ATCC 27750]
          Length = 350

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 193/338 (57%), Gaps = 25/338 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLL 90
           + R  Q+++W++ +    F   +++S  +R  L +    +  E V  + S  DGT K+L 
Sbjct: 23  KFRAGQLYQWMHEKLADSFDECTNLSNALRQKLKETSEYVCLEPVRVQHSKLDGTEKYLF 82

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
           R     +     +E+V +      ++C+SSQVGC + C FC +     VR+L   E+L Q
Sbjct: 83  R-----LSDGNYVESVLMKYHHGNSVCISSQVGCRMGCRFCASTLNGKVRDLRPSEMLDQ 137

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           +   + + G+                 ++SN+V+MG GEP+ N+DN+ K + + +D  GL
Sbjct: 138 IYRIQKITGE-----------------RVSNVVVMGSGEPMDNYDNLIKFIELLNDERGL 180

Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           + S+R IT+S+ G VP +  + + ++ + LAISLHA +++LR  ++PI  KY +E ++D 
Sbjct: 181 NISQRNITVSSCGIVPKLKELADLKLQITLAISLHAPNDELRKTMMPIANKYSIEEIMDV 240

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           CR+Y   +  RRI+FEY ++KG+NDS   A  LI+++KG+   INLIP NP    +Y  +
Sbjct: 241 CRYYIECT-GRRISFEYSLVKGVNDSMECAKQLIELVKGMNCHINLIPVNPIKERDYKQT 299

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            ++++  F   ++++G +  IR   G DI  ACGQL++
Sbjct: 300 GKEEVYAFKNKLEKNGINVTIRREMGRDIDGACGQLRN 337


>gi|291287807|ref|YP_003504623.1| radical SAM enzyme, Cfr family [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884967|gb|ADD68667.1| radical SAM enzyme, Cfr family [Denitrovibrio acetiphilus DSM
           12809]
          Length = 357

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 188/362 (51%), Gaps = 27/362 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  M + ELE  ++  G+     + R  QI KW+Y RG      M+D+S   R  L    
Sbjct: 7   LDSMNKFELENFVISQGMQ----KFRAIQIHKWVYRRGAESVAEMTDLSIADREKLLGMA 62

Query: 69  SIIYPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
                 + D  K + DG+ K+L             IE V + +  R T C+SSQVGC + 
Sbjct: 63  KFTVMNVADVRKSAMDGSVKFLFSLE-----DGETIEAVVLNDGRRLTACISSQVGCRMG 117

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC T    L RNLT  EI+ QV      L ++          + S G K++N+V MGM
Sbjct: 118 CAFCSTAKMGLRRNLTMGEIIKQV----KRLNEY----------LASEGTKLNNLVFMGM 163

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAV 246
           GEPL N DNVK ++++  D  G  FS ++ITLST G    +  +   +  V LA+S++A 
Sbjct: 164 GEPLDNLDNVKNAINVLLDDDGYGFSHKKITLSTCGLTDRLEELFAMDTPVNLAVSVNAA 223

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
             + R  L+P++ KYPL  L+D  +  P L   + IT EYV+L+G+ND+  DA  L K+L
Sbjct: 224 DQETRKGLMPVSNKYPLSGLMDVLKKLP-LQKRKSITIEYVLLRGVNDTLDDARKLAKLL 282

Query: 307 KGI-PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +G+   KINLI +N      YL   +KD + F E +  +     IR   G DI  ACGQL
Sbjct: 283 RGLDKVKINLITYNSGGDAGYLPPSEKDTLKFQEYLISNKIGVFIRKSLGRDIEGACGQL 342

Query: 366 KS 367
           ++
Sbjct: 343 RA 344


>gi|86607188|ref|YP_475951.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
           JA-3-3Ab]
 gi|123751756|sp|Q2JRQ8|RLMN_SYNJA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|86555730|gb|ABD00688.1| radical SAM enzyme, Cfr family [Synechococcus sp. JA-3-3Ab]
          Length = 356

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 186/355 (52%), Gaps = 36/355 (10%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79
           AL    + Q     R  Q+  W+Y +GIR  Q ++   +  R  L Q + +   ++V   
Sbjct: 15  ALKDWAVEQGQPAYRGQQLHTWLYHKGIRSLQEVTVFPKAWREAL-QEYPVGRSQVVQRI 73

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
            S DGT K+LL+     +     IETV IP   R T+CVSSQVGC + C+FC TG     
Sbjct: 74  ESRDGTVKFLLQLADGEL-----IETVGIPTARRLTVCVSSQVGCPMACNFCATGKMGYR 128

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL   EIL QVL  +    DF              GR++S++V MGMGEPL N D V +
Sbjct: 129 RNLKLHEILDQVLTVQE---DF--------------GRRVSHVVFMGMGEPLLNRDTVVQ 171

Query: 200 SLSIASDSMGLSFSKRRITLSTSGF---VPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256
           ++   +  +G+   +R ITLST G    +P +A+  +++ + LA+SLHA + +LR  L+P
Sbjct: 172 AIRSLNQDIGI--GQRHITLSTVGVPRQIPWLAQ--QDLQITLAVSLHAPNQELRQQLIP 227

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPA 311
               YPL+ LI  CR Y  L + RRI+FEY +L G+ND P  A  L  +L+     G   
Sbjct: 228 SAAHYPLDALIQDCRDY-MLCSGRRISFEYTLLAGVNDLPIHARQLAHLLRQASQAGARL 286

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            +NLIP+NP    +Y       +  F   ++       +R  RGLD  AACGQL+
Sbjct: 287 HVNLIPYNPIAEADYQRPHPTRVAEFVRLLEEHHVQVSVRQTRGLDSNAACGQLR 341


>gi|218132885|ref|ZP_03461689.1| hypothetical protein BACPEC_00746 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991758|gb|EEC57762.1| hypothetical protein BACPEC_00746 [Bacteroides pectinophilus ATCC
           43243]
          Length = 360

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 194/357 (54%), Gaps = 29/357 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M   E+ E ++ +G      + R  QI++W++ + +  +  M+++   +R  L   + + 
Sbjct: 11  MTPSEVSELIVSLG----DKKFRAKQIYQWMHQKLVASYDEMTNVPAALRQKLAAEYPLT 66

Query: 72  YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
             E V  +IS  DGTRK+L R     +     IE+V +      ++C+SSQVGC + C F
Sbjct: 67  VLEPVRVQISQIDGTRKYLFRLSDGNL-----IESVLMKYHHGNSVCISSQVGCRMGCRF 121

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +    LVR L   E+L Q+                   +   +G ++ N+V+MG GEP
Sbjct: 122 CASTIDGLVRGLLPSEMLEQIY-----------------RIQKDIGERVDNVVVMGSGEP 164

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSND 249
             NFDN+ + + + ++  GL+ S R +T+ST G VP I  + + +  + LAISLH+ +++
Sbjct: 165 FDNFDNLLRFIELLNNEEGLNISARNLTVSTCGIVPKIYELADMQPQITLAISLHSPNDE 224

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           LR  ++P+  KY ++ ++ ACR+Y      RRITFEY ++K +ND+   A+ L+ ++KGI
Sbjct: 225 LRRSIMPVANKYSIDEIMKACRYYVE-KTGRRITFEYSLVKDVNDTDECAMQLVHLVKGI 283

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
              +NLIP NP    +Y  + Q  +  F   +++ G ++ +R   G DI  ACGQL+
Sbjct: 284 KCHVNLIPVNPIKERDYKQTAQAGVSHFRSRLEKCGVNATVRREMGRDIDGACGQLR 340


>gi|164687799|ref|ZP_02211827.1| hypothetical protein CLOBAR_01443 [Clostridium bartlettii DSM
           16795]
 gi|164603074|gb|EDQ96539.1| hypothetical protein CLOBAR_01443 [Clostridium bartlettii DSM
           16795]
          Length = 343

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/369 (33%), Positives = 202/369 (54%), Gaps = 32/369 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L     EEL+E + +IG        R +QI+ WIY +G + F  M +I + +R  L
Sbjct: 4   QKIALKNFTEEELKEFMKEIG----EKPFRGTQIYSWIY-KGAKTFDDMKNIPKSLREKL 58

Query: 65  NQ--HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            +  +   +  E+V  K   D T+K+L       I     IE+V +    R T C+S+QV
Sbjct: 59  EKVSYIGNLETELV-LKSKVDKTKKYLFALNDGNI-----IESVMMDYDDRVTACISNQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +  + L+RNL   EIL Q++                  +    G+++SN+
Sbjct: 113 GCRMGCKFCASTMEGLIRNLEPWEILDQII-----------------KIQEDTGKRVSNL 155

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V+MG GEPL NF+N K+ L I +D  GL+   R ITLST G +P +  + +  I + LA+
Sbjct: 156 VLMGSGEPLDNFENTKQFLKIVNDKNGLNIGYRHITLSTCGVIPKMYELADLNIPINLAL 215

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+  ++ R  ++P+ + Y ++ LI AC++Y   +N RR+TFEY ++KG+NDS  ++  
Sbjct: 216 SLHSPFDEKRAEIMPVAKAYKVKDLIKACQNYIDKTN-RRVTFEYSLIKGVNDSKAESDE 274

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + ++LKG+   +NLIP N     ++   D+  I  F + ++++   + +R   G DI  A
Sbjct: 275 ISRLLKGMLCHVNLIPINKVEERDFERPDKTYIYKFRDALEKNKIPTTVRNSMGSDIGGA 334

Query: 362 CGQLKSLSK 370
           CGQL+   K
Sbjct: 335 CGQLRRKHK 343


>gi|284039833|ref|YP_003389763.1| radical SAM enzyme, Cfr family [Spirosoma linguale DSM 74]
 gi|283819126|gb|ADB40964.1| radical SAM enzyme, Cfr family [Spirosoma linguale DSM 74]
          Length = 349

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 183/336 (54%), Gaps = 19/336 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI-SCDGTRKWLLR 91
            R  Q+ +W++ +    F+ M+++S   R LLN +F I  P  VD++  S DGT K   +
Sbjct: 25  FRAKQVHEWLWKKSALSFEQMTNLSLSTRELLNANFEI-RPLTVDQQQRSNDGTIKSSFK 83

Query: 92  -FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
            F    + G V I  +   +  R T CVSSQVGCSLTC FC TG     RNL A EI  Q
Sbjct: 84  LFDGNLVEG-VLIPALRNDDLDRMTACVSSQVGCSLTCKFCATGYMDRKRNLDAAEIYDQ 142

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           V+              I+     +    ++NIV MGMGEPL N+ NV +S+   +   GL
Sbjct: 143 VVA-------------IDRQAKENYDAPLTNIVYMGMGEPLLNYKNVLESVDRITSPDGL 189

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S +RIT+ST+G    I ++G++ +   LA+SLHA ++  R+ ++PIN    LE L DA
Sbjct: 190 GMSPKRITVSTAGIAKMIRQLGDDDVKFNLALSLHAANDQKRDQIMPINESNTLEALGDA 249

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
             ++   +  R ITFEY++    ND+ +DA  L K  K +PAK+N+I +NP     +  +
Sbjct: 250 LTYFYKKTGTR-ITFEYILFYNFNDTLQDAQELWKFTKRVPAKVNIIEYNPIAEANFKNT 308

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           D + +  F+  ++  G    +R  RG DI AACGQL
Sbjct: 309 DPQTLDKFAGFLESKGVIVNVRRSRGKDIDAACGQL 344


>gi|119357341|ref|YP_911985.1| radical SAM protein [Chlorobium phaeobacteroides DSM 266]
 gi|205829698|sp|A1BGN4|RLMN_CHLPD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|119354690|gb|ABL65561.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 363

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 194/367 (52%), Gaps = 37/367 (10%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           + R+EL +A+  +G P      RT QI +WI+      F+ M+ IS E+R+ L   F I 
Sbjct: 11  LSRQELRQAIANLGEPA----YRTRQIHQWIFSHRAATFEEMTTISLELRNKLADQFRIG 66

Query: 72  YPEIVDEKISCDG-------TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +P + D     DG       T K LL      +    +IETV IP ++R T CVSSQVGC
Sbjct: 67  FPILAD--CQQDGSANDPFSTVKLLLE-----LDDNEKIETVLIPSENRMTACVSSQVGC 119

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C FC +G     RNL+A+EI+ QV      L DF        +       +I+NIV 
Sbjct: 120 PLQCRFCASGQTGFKRNLSADEIIDQVF----SLNDF--------IRTKHESNEITNIVF 167

Query: 185 MGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           MGMGEPL NF+N+K+S+ + SD S   +  +R+IT+ST G +P I  +G+  +   LAIS
Sbjct: 168 MGMGEPLLNFENLKESIEVLSDQSYKFNLPQRKITISTVGIIPGINELGKSGLKTKLAIS 227

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+ S + R  L+P+  ++ L  L      Y        +T  Y++LKGINDS  DA  L
Sbjct: 228 LHSASQETRESLIPVASEFSLTQLRKTLSEYTS-QTGEPVTLVYMLLKGINDSVEDARLL 286

Query: 303 IKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           +K  +    KINLI +N     ++  + ++ KD+  F + I  +G    +R   G  I A
Sbjct: 287 VKFSRSFLCKINLIDYNSIINMKFKPVFNETKDM--FIQHILDAGIHVTVRKSHGASINA 344

Query: 361 ACGQLKS 367
           ACGQL +
Sbjct: 345 ACGQLAA 351


>gi|298490256|ref|YP_003720433.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708]
 gi|298232174|gb|ADI63310.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708]
          Length = 356

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/382 (34%), Positives = 200/382 (52%), Gaps = 51/382 (13%)

Query: 2   NFLKKE---SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
           NF K E    L+G    EL   + + G P      R  Q+  WIY +G+R    +S   +
Sbjct: 14  NFGKSELIGPLLGASVVELTAWVQEQGQPA----YRGKQLHDWIYDKGVRSLGDISVFPK 69

Query: 59  EVRHLLNQ--------HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE 110
             R  +          H+  + P         D T K+LL+     I     IETV IP 
Sbjct: 70  SWREKVADVPIGRSSLHYRAVAP---------DDTVKYLLKLADGEI-----IETVGIPS 115

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
             R T+CVS+QVGC + C FC TG     RNL+  EI+ QVL  +         ED +  
Sbjct: 116 HKRLTVCVSTQVGCPMACDFCATGKGGYKRNLSRGEIVDQVLTVQ---------EDFQ-- 164

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                 +++SN+V MG+GEPL N +NV  +L   ++ +G+   +R +T+ST G    I +
Sbjct: 165 ------QRVSNVVFMGLGEPLLNTENVILALKALNEDVGIG--QRSLTISTVGIRDRIHQ 216

Query: 231 VGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           + +  + + LA+SLHA +  LR  L+P  + YP+E L++ CR Y  ++  RR+TFEY++L
Sbjct: 217 LAQHHLQITLAVSLHAPNQALREQLIPSAKPYPIEDLLNECREYVEIT-GRRVTFEYILL 275

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
            G+ND P  AL L K L+G  + +NLIP+NP    +Y   ++  I  F   +++   +  
Sbjct: 276 AGVNDLPEQALELSKRLRGFQSHVNLIPYNPIEEVDYKRPNRDRIQAFVNVLQQQNITVS 335

Query: 350 IRTPRGLDILAACGQLKSLSKR 371
           +R  RGL+  AACGQL++ SKR
Sbjct: 336 VRYSRGLEADAACGQLRT-SKR 356


>gi|257464159|ref|ZP_05628540.1| florfenicol resistance protein [Fusobacterium sp. D12]
 gi|317061675|ref|ZP_07926160.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
 gi|313687351|gb|EFS24186.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
          Length = 349

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 196/372 (52%), Gaps = 28/372 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K +L+ + ++EL E L+  G+     +    +++ W++ +  R+ Q M+++S + R +
Sbjct: 1   MEKRNLLDLNQQELTELLVAEGMK----KFYGKEVFLWLHKKFARNIQEMTNLSLKHREI 56

Query: 64  LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQ 121
           L +   I Y  ++  ++S  D T K+L +      G    IETV +  +  R TLC+SSQ
Sbjct: 57  LEEKTYIPYLNLLKHQVSKIDKTEKFLFQLED---GNT--IETVLLRHRDQRNTLCISSQ 111

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C+FC TG    VRNL   EIL QV      L                 G K++N
Sbjct: 112 VGCPVKCTFCATGQDGFVRNLRVSEILNQVYTIERRLN--------------KRGEKLTN 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLA 240
           +V MGMGEPL N D + K+L I S   G+  SKR+IT+STSG VP I R+  E+  V LA
Sbjct: 158 LVFMGMGEPLINMDALMKALEILSCEEGICISKRKITISTSGIVPAIERILMEKTPVELA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLH+  N+ R+ ++PIN+ YPLE L      Y      RR+TFEY+++K  N S  DA 
Sbjct: 218 ISLHSAINEKRDRIIPINKAYPLEDLSAVLLEYQR-QTKRRLTFEYILIKDFNVSEGDAN 276

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDIL 359
            L          +NLIP NP          +K I  F E +K     +  +R  +G DI 
Sbjct: 277 ALADFAHQFDHIVNLIPCNPVSETGLERPSEKKIERFYEYLKNVRKVNVSLRQEKGTDID 336

Query: 360 AACGQLKSLSKR 371
            ACGQL+   ++
Sbjct: 337 GACGQLRQNQRK 348


>gi|225574500|ref|ZP_03783110.1| hypothetical protein RUMHYD_02577 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038287|gb|EEG48533.1| hypothetical protein RUMHYD_02577 [Blautia hydrogenotrophica DSM
           10507]
          Length = 347

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 197/357 (55%), Gaps = 29/357 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  EEL +AL  +G        R  Q+++WI+ +    +  M+++S+ +R  L + + + 
Sbjct: 7   MTLEELRQALTGLG----EKPFRAKQLYEWIHRKLAVSYDEMTNLSKHLREKLEKEYPLT 62

Query: 72  YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
             E VD ++S  DGT K+L R       G V IE+V +      ++C+SSQVGC + C F
Sbjct: 63  VLEAVDVQVSKQDGTCKYLFRLE----DGNV-IESVLMRYHHGNSVCISSQVGCRMGCKF 117

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +    L RNL + E+L Q+   + L  +                 ++SN+V+MG GEP
Sbjct: 118 CASTIGGLTRNLRSSEMLDQIYRIQRLSQE-----------------RVSNVVVMGTGEP 160

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
           L N++N+ + + + +   GL  S+R +T+ST G VP I ++ +E + + LA+SLHA +++
Sbjct: 161 LDNYENLLRFIELLTGEDGLHISQRNLTVSTCGLVPKIRQLADEKLQITLALSLHAPNDE 220

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R  L+PI  KY ++ ++DACR+Y      RRITFEY +++G+ND   DA  L   ++ I
Sbjct: 221 KRKELMPIAYKYTMDEVLDACRYYFQ-KTGRRITFEYSLVRGVNDFEEDACQLAGQIQDI 279

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
              +NLIP NP     +  S ++ +  F   +++ G +  IR   G DI  ACGQL+
Sbjct: 280 NCHVNLIPVNPVKERSFRQSTRQAVENFKIKLEKCGINVTIRREMGSDIDGACGQLR 336


>gi|166363996|ref|YP_001656269.1| hypothetical protein MAE_12550 [Microcystis aeruginosa NIES-843]
 gi|205829811|sp|B0JT33|RLMN_MICAN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|166086369|dbj|BAG01077.1| hypothetical protein MAE_12550 [Microcystis aeruginosa NIES-843]
          Length = 337

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 189/361 (52%), Gaps = 31/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+    EEL + +   G P      R  Q+ +W+Y +G+     +S   QE R  +   
Sbjct: 2   TLLAKSLEELTDWVKDQGQPA----YRGKQLHQWLYEKGVHSLADISVFPQEWRSKMAD- 56

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           + I    I    ++ D TRK+LL+     I     IE V IP + R T+CVSSQVGC + 
Sbjct: 57  YPIGRSLIHYRSVAPDRTRKYLLKLADGLI-----IEAVGIPSEKRLTVCVSSQVGCPMA 111

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG     RNL A EI+ QVL  +         ED +        +++S++V MGM
Sbjct: 112 CDFCATGKGGFTRNLKAHEIVDQVLTVQ---------EDFQ--------QRVSHVVFMGM 154

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N   V  ++   +  +G+   +R +T+ST G    I ++ E  + +  A+SLHA 
Sbjct: 155 GEPLLNIPEVVTAIHCLNKDVGIG--QRCLTISTVGLPHKIKQLAEHNLQITFAVSLHAS 212

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +  +R  L+P    Y L  LI  C+ Y  ++  RR+TFEY++L G+ND P  A  L K++
Sbjct: 213 NQQVRAKLIPSADHYLLSNLIQDCQEYVQIT-GRRVTFEYILLAGVNDLPEHARELAKLV 271

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KG  + +NLIP+NP    +Y   D+K I  F   +++   +  +R  RGL   AACGQL+
Sbjct: 272 KGFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAVTVRYSRGLATDAACGQLR 331

Query: 367 S 367
           S
Sbjct: 332 S 332


>gi|146297083|ref|YP_001180854.1| radical SAM protein [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|205829688|sp|A4XL78|RLMN_CALS8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145410659|gb|ABP67663.1| 23S rRNA m(2)A-2503 methyltransferase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 344

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 185/336 (55%), Gaps = 25/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI++W+Y +   D    ++I  ++R  + + F +    +V  K   DG     ++F
Sbjct: 25  FRANQIFEWLYKKNATDVNSFTNIPTQLRKRIEEEFILNSLRVV--KYESDGES---IKF 79

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               + G   IE+V++P K    +C+S+QVGC + C+FC +    ++RNL+A E++ Q++
Sbjct: 80  LLELVDGNA-IESVFLPYKYGNAICISTQVGCRMKCAFCASTIGGMIRNLSAGEMVDQIV 138

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                        +IE +      +KISN+V+MG GEP  N +NV K + I +   G + 
Sbjct: 139 -------------NIENIT----KKKISNVVLMGSGEPFDNIENVFKFIDIINSKEGKNI 181

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+ST G V  I ++ E    V LAISLHA +N+LRN LVP+NRKY +E ++ A  
Sbjct: 182 GARHITISTVGIVDGIYKLSEYPKQVNLAISLHAPNNNLRNKLVPMNRKYSIEDILKAVD 241

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y   +N RR+TFEY ++ G+NDS   A  L KIL G    +NLIP NP  G  +    +
Sbjct: 242 YYISKTN-RRVTFEYALIDGVNDSIECANELAKILSGKLVHVNLIPVNPVNGRNFKKPPK 300

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           + +  F   +  SG    IR   G  I AACGQL+S
Sbjct: 301 ERVKEFYNVLILSGIQVTIRRELGSSIAAACGQLRS 336


>gi|288922416|ref|ZP_06416604.1| radical SAM enzyme, Cfr family [Frankia sp. EUN1f]
 gi|288346219|gb|EFC80560.1| radical SAM enzyme, Cfr family [Frankia sp. EUN1f]
          Length = 380

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 196/368 (53%), Gaps = 31/368 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLLNQ 66
           L  + R+E       +G+P      R  Q+ +  + R +R  D   M+D+  +VR  L  
Sbjct: 25  LADLSRDERRAVAESLGLPA----FRADQLARHYFARHLRAEDAAAMTDLPAQVRATL-- 78

Query: 67  HFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               + P ++    +  CDG  TRK + R     + G  +IE+V +    R T+CVSSQ 
Sbjct: 79  -VDSLLPRLLTAATTADCDGGQTRKTVWR----TVDG-AKIESVLMRYPQRTTVCVSSQA 132

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV+ A            +    +P    ++SN+
Sbjct: 133 GCGMACPFCATGQGGLTRNLSTAEIVEQVVDA---------ARTMTRGGLPGGPGRLSNV 183

Query: 183 VMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEPL N++ +  +L   I     GL  S R +T+ST G VP I R+ GE + V L
Sbjct: 184 VFMGMGEPLANYNALLAALRRLIEPTPDGLGLSARSLTVSTVGLVPGIRRLAGEGLPVTL 243

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LRN LVPIN ++P+  +++A   Y  ++  RR++ EY ++ G+NDSP  A
Sbjct: 244 ALSLHAPDDELRNELVPINTRWPVAEVLEAAWDYARITG-RRVSIEYALIDGVNDSPERA 302

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L  +L G  A +NLIP NP  G  +  S  +    F + ++  G ++ +R  RG +I 
Sbjct: 303 DALGALLAGQLAHVNLIPLNPTDGSSWQASAPRGQRVFVDRLRARGVTATVRDTRGREIA 362

Query: 360 AACGQLKS 367
           AACGQL +
Sbjct: 363 AACGQLAA 370


>gi|300087157|ref|YP_003757679.1| Cfr family radical SAM protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299526890|gb|ADJ25358.1| radical SAM enzyme, Cfr family [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 356

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/322 (37%), Positives = 178/322 (55%), Gaps = 18/322 (5%)

Query: 54  SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKS 112
           S + + ++H L Q       E+++E  S DG   K L             +E      K 
Sbjct: 48  SYLPESLKHKLRQISGHAALEVLEESKSVDGKNIKTLFGLDDGNTIESTAMEFGGSAGKI 107

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R T+CVSSQVGC + C +C TG     RNL+  E++ QVL  R   G             
Sbjct: 108 RRTVCVSSQVGCMIGCPYCATGMNGFHRNLSPGEMIEQVLYYRGETG------------- 154

Query: 173 PSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
             VGR  ++N+V MGMGEPL N+DNV  ++S+ +   G+ F  R+IT+STSG VP I R+
Sbjct: 155 -RVGRNSLTNVVFMGMGEPLLNYDNVVTAVSLLNSHHGMGFGARQITISTSGIVPGILRL 213

Query: 232 G-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E++   LA+S+ + +++LRN+LVP+NRKYPL  LI+ACR Y  L+  R++  EYV+ +
Sbjct: 214 AREDLYCQLAVSIQSATDELRNLLVPVNRKYPLAHLIEACREYSELTR-RKVFIEYVLFE 272

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           G+NDS +DA  L K+L+ +   INLI  N      +  +    +V F   +   G+ + +
Sbjct: 273 GVNDSIQDAEGLAKLLEPLDCSINLIIVNNSGIGTFRPTSYDTVVAFQRLLVSKGFRTML 332

Query: 351 RTPRGLDILAACGQLKSLSKRI 372
           R  RG DI A CGQL++   RI
Sbjct: 333 RLSRGTDIEAGCGQLRNRRLRI 354


>gi|313893380|ref|ZP_07826952.1| 23S rRNA m2A2503 methyltransferase [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442021|gb|EFR60441.1| 23S rRNA m2A2503 methyltransferase [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 348

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 199/366 (54%), Gaps = 30/366 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   EEL+       I     + R  Q+  +IY R + DFQ M+   +E+R  L+ + 
Sbjct: 4   LLGKSLEELQSIFKTHNIQ----KFRAKQLIDYIYHRYVFDFQEMTQFPKELRQWLSDNC 59

Query: 69  SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I  P ++ E IS DG TRK LL    +       +E V + +    ++CVSSQVGC++ 
Sbjct: 60  VISLPTLITESISPDGKTRKILLEMTDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +    L R+LT  EI+ QV++  +L  +                 +I ++V+MG 
Sbjct: 115 CVFCASTQGGLYRDLTVAEIIGQVVIFGALTKE-----------------QIHSVVVMGA 157

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N+DNV ++L +  D +  + S R++T+ST G+VPNI ++ +E + + LA+SLHA 
Sbjct: 158 GEPLQNYDNVLQALQLLHDPVICNISYRKMTISTCGWVPNIYKLADEGLPITLALSLHAT 217

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N++R  ++P+  +Y L  ++DA ++Y   +  RRITFEY+++  +N S  +A  L +I 
Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYD-TTQRRITFEYILIDSVNASMEEAHALGQIC 276

Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           K  P   +NLIP N     E       ++ TF + +   G S  +R   G  I AACGQL
Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVGSYGVSVTVRKEMGDAIQAACGQL 336

Query: 366 KSLSKR 371
           K+   R
Sbjct: 337 KAAHGR 342


>gi|294670879|ref|ZP_06735735.1| hypothetical protein NEIELOOT_02583 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307366|gb|EFE48609.1| hypothetical protein NEIELOOT_02583 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 219

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/227 (44%), Positives = 145/227 (63%), Gaps = 16/227 (7%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+ +W++  G  DF  M+D+++ +R  L +   +  P ++  + S DGTRKWLL   
Sbjct: 7   RAKQVMRWMHWGGAADFAEMTDLAKSLRAKLEECAIVGVPALMTAQESKDGTRKWLLD-- 64

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLT  EI+ Q+  
Sbjct: 65  ---VGTGNGVETVFIPEADRGTLCISSQVGCALECTFCSTGRQGFNRNLTTAEIIGQLWW 121

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
           A   LG  P  E           R ISN+VMMGMGEPL N+DNV ++L++  D  G S S
Sbjct: 122 ANKALGATPKNE-----------RMISNVVMMGMGEPLANYDNVVRALAVMLDDHGYSLS 170

Query: 214 KRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
           +RR+T+STSG VP + R+ E++ V LA+SLHA ++++R+ +VP+N+ 
Sbjct: 171 RRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDEVRDQIVPLNKN 217


>gi|294674247|ref|YP_003574863.1| 23S rRNA m2A2503 methyltransferase [Prevotella ruminicola 23]
 gi|294472979|gb|ADE82368.1| 23S rRNA m2A2503 methyltransferase [Prevotella ruminicola 23]
          Length = 357

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 200/379 (52%), Gaps = 40/379 (10%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
           + +K+ L+GM   EL++ + ++G+P    +   +QI KW+Y + +     M+++S+  R 
Sbjct: 2   YDEKKVLLGMQPGELQQVVTELGMP----KFTAAQIAKWLYQQHVGSIADMTNLSKANRE 57

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----------- 111
            L + + +     +D + S DGT K+L  FP R   G   +ETVYIPE+           
Sbjct: 58  KLAEQYEVGSMAPIDCQRSVDGTIKYL--FPTR--SGKF-VETVYIPERRRVGEQGSGIG 112

Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
            R TLCVS QVGC + C FC TG Q    +LTA +IL Q+                    
Sbjct: 113 DRATLCVSCQVGCKMNCLFCQTGKQGFEGSLTAADILNQIY------------------A 154

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
           +P     ++NIV MG GEP+ N D + ++  + +   G ++S RRIT+S+ G    + R 
Sbjct: 155 LPERD-TLTNIVFMGQGEPMDNLDAILQATQVLTADWGYAWSPRRITVSSVGVKNKLKRF 213

Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
            +E    +AIS+H+   + R +L+P  ++  +  +ID  + Y   S+ RR +FEY+   G
Sbjct: 214 LDESECHVAISMHSPLPEQRQMLMPAEKQMSITEVIDLLKQYD-FSHQRRCSFEYICFAG 272

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
           +ND+   A  ++K+++G+  ++NLI F+  PG +   +D+K +    + +   G  + IR
Sbjct: 273 LNDTTMHAREIVKLVRGLDCRVNLIRFHEIPGVDLPGADEKRMEALRDYLTAHGVFTTIR 332

Query: 352 TPRGLDILAACGQLKSLSK 370
             RG DI AACG L +  K
Sbjct: 333 ASRGQDIFAACGLLSTAKK 351


>gi|169630257|ref|YP_001703906.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           abscessus ATCC 19977]
 gi|169242224|emb|CAM63252.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 373

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 195/369 (52%), Gaps = 32/369 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  M  E+  + + ++G+P      R  QI    Y R + D   M+D+    R  + +  
Sbjct: 24  LADMSLEQSRDVVTELGLPA----FRAKQIANQYYGRLVGDPATMTDLPAGARGGVAE-- 77

Query: 69  SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             ++P +++   +I+CD   TRK L R           +E+V +    R TLC+SSQ GC
Sbjct: 78  -ALFPRLLEPLRQIACDAGDTRKTLWRLHDGST-----VESVLMRYPDRNTLCISSQAGC 131

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+A EIL QV  A + L D           +P    ++SNIV 
Sbjct: 132 GMACPFCATGQGGLTRNLSAAEILEQVRDAAASLRDG---------QLPGGPGRLSNIVF 182

Query: 185 MGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V   L    A    G   S+R +T+ST G  P I R+ +E +GV LA+
Sbjct: 183 MGMGEPLANYNRVLTVLRKITAPPPEGFGISQRGVTVSTVGLAPAIRRLADEGLGVTLAV 242

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH   ++LR+ LVP+N ++ +  ++DA R+Y  ++  RR++ EY +++ +ND P  A  
Sbjct: 243 SLHCPDDELRDTLVPVNTRWAISEVLDAARYYADVTG-RRVSIEYALIRDVNDQPWRADM 301

Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L K L+   G    +NLIP NP PG ++  S +     F   ++  G S  +R  RG +I
Sbjct: 302 LGKKLRKALGQMVHVNLIPLNPTPGSQWDASPKPVEREFVRRVREQGVSCTVRDTRGREI 361

Query: 359 LAACGQLKS 367
            AACGQL +
Sbjct: 362 AAACGQLAA 370


>gi|238019374|ref|ZP_04599800.1| hypothetical protein VEIDISOL_01238 [Veillonella dispar ATCC 17748]
 gi|237864073|gb|EEP65363.1| hypothetical protein VEIDISOL_01238 [Veillonella dispar ATCC 17748]
          Length = 348

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 200/366 (54%), Gaps = 30/366 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   EEL+       I     + R  Q+  +IY R + DFQ M+   +E+R  L+ + 
Sbjct: 4   LLGKSLEELQSIFKTHNIQ----KFRAKQLIDYIYHRYVFDFQDMTQFPKELRQWLSDNC 59

Query: 69  SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I  P ++ E +S DG TRK L+    +       +E V + +    ++CVSSQVGC++ 
Sbjct: 60  IISLPTLITESVSPDGKTRKILVEMIDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +    L R+LTA EI+ QV++  +L  +                 +I ++V+MG 
Sbjct: 115 CVFCASTQGGLYRDLTAAEIIGQVVIFGALTKE-----------------QIHSVVVMGA 157

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N+DNV ++L +  D +  + S R++T+ST G+VPNI ++ +E + + LA+SLHA 
Sbjct: 158 GEPLQNYDNVLQALQLLHDPVICNISYRKMTISTCGWVPNIYKLADEGLPITLALSLHAT 217

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N++R  ++P+  +Y L  ++DA ++Y   +  RRITFEY+++  IN S  +A  L +I 
Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYD-TTQRRITFEYILIDSINASMEEAHALGEIC 276

Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           K  P   +NLIP N     E       ++ TF + +   G S  +R   G  I AACGQL
Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVASYGVSVTVRKEMGDAIQAACGQL 336

Query: 366 KSLSKR 371
           K+   R
Sbjct: 337 KAAHGR 342


>gi|282850141|ref|ZP_06259520.1| 23S rRNA m2A2503 methyltransferase [Veillonella parvula ATCC 17745]
 gi|294791793|ref|ZP_06756941.1| radical SAM enzyme, Cfr family [Veillonella sp. 6_1_27]
 gi|294793654|ref|ZP_06758791.1| radical SAM enzyme, Cfr family [Veillonella sp. 3_1_44]
 gi|282579634|gb|EFB85038.1| 23S rRNA m2A2503 methyltransferase [Veillonella parvula ATCC 17745]
 gi|294455224|gb|EFG23596.1| radical SAM enzyme, Cfr family [Veillonella sp. 3_1_44]
 gi|294457023|gb|EFG25385.1| radical SAM enzyme, Cfr family [Veillonella sp. 6_1_27]
          Length = 348

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 198/366 (54%), Gaps = 30/366 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   EEL+       I     + R  Q+  +IY R I DF+ M+   +++R  L  + 
Sbjct: 4   LLGKSLEELQSIFKTHNIQ----KFRAKQLIDYIYHRYIFDFEDMTQFPKDLRQWLGDNC 59

Query: 69  SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I  P ++ E I+ DG TRK L+    +       +E V + +    ++CVSSQVGC++ 
Sbjct: 60  VISLPTLITESIAPDGKTRKILVEMSDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +    L R+LT  EI+ QV++  +L  +                 +I ++V+MG 
Sbjct: 115 CVFCASTQGGLYRDLTVAEIIGQVVIFGALTKE-----------------EIHSVVVMGA 157

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N+DNV ++L +  D M  + S R++T+ST G+VPNI ++ +E + + LA+SLHA 
Sbjct: 158 GEPLQNYDNVLQALQLLHDPMICNISYRKMTISTCGWVPNIYKLADEGLPITLALSLHAT 217

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N++R  ++P+  +Y L  ++DA ++Y   +  RR+TFEY+++  +N S  DA  L KI 
Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYN-TTQRRVTFEYILIDSVNASIDDAHALGKIC 276

Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           K  P   +NLIP N     E       ++ TF + +   G S  +R   G  I AACGQL
Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVSSYGVSVTVRKEMGDAIQAACGQL 336

Query: 366 KSLSKR 371
           K+   R
Sbjct: 337 KAAHGR 342


>gi|302874751|ref|YP_003843384.1| radical SAM enzyme, Cfr family [Clostridium cellulovorans 743B]
 gi|307690634|ref|ZP_07633080.1| ribosomal RNA large subunit methyltransferase N [Clostridium
           cellulovorans 743B]
 gi|302577608|gb|ADL51620.1| radical SAM enzyme, Cfr family [Clostridium cellulovorans 743B]
          Length = 351

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 186/336 (55%), Gaps = 26/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD-GTRKWLLR 91
            R  Q++ WIY + +  F  M ++ +  +  L ++F I  PEI  +  S +  T K+LL+
Sbjct: 24  FRAKQVFDWIY-KAVASFDEMKNLPKNTKEKLKEYFFIGIPEITHKYDSINKDTAKYLLK 82

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                  G V IE VY+      ++C+S+Q+GC + CSFC +     +R+LT+ +IL ++
Sbjct: 83  LS----DGNV-IEAVYMKYNYGNSVCLSTQIGCRMGCSFCASTIGGRIRDLTSGDILGEI 137

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L       +F   E            ++SNIV+MG GEP  N++NV K L + +   GL+
Sbjct: 138 LAM-----EFNEKE------------RVSNIVLMGSGEPFDNYENVTKFLELVNSKDGLN 180

Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
              R ITLST G VP I R  + +  V LAISLHA +++LR  ++PI  KY ++ +++AC
Sbjct: 181 IGARHITLSTCGLVPGIIRFADLKSQVTLAISLHAPNDELRKTMMPIANKYSIKEILEAC 240

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
            +Y   +N RRITFEY ++K +ND+   A  L  +LKGI   +NLIP N      +    
Sbjct: 241 NYYIEKTN-RRITFEYSLVKDVNDTEDHARELSALLKGILCHVNLIPVNVVKESGFSRPS 299

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            K ++ F + +  +G  + IR   G DI AACGQL+
Sbjct: 300 DKAVMKFKKILDSNGIEATIRKEMGADINAACGQLR 335


>gi|168702822|ref|ZP_02735099.1| hypothetical protein GobsU_25056 [Gemmata obscuriglobus UQM 2246]
          Length = 355

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 179/335 (53%), Gaps = 15/335 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
           MR +QI K I       F+ MSD+ + +R  L   F +    +     + D T K++LR 
Sbjct: 18  MRVNQICKQILANRATAFEDMSDLPKGLRADLAGAFRVFSMSVERHFAASDDTHKFVLRL 77

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IE V I +  R T C+S+QVGC + C FC +G   +VRNLTA E++ Q++
Sbjct: 78  ADGRM-----IEAVLIQDDGRATACISTQVGCGMGCVFCASGLNGVVRNLTAGEMVEQLV 132

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           L R+L               P    ++++IV+MGMGEPL N DN+  +L++A D  GL  
Sbjct: 133 LLRNLTD--------ANSTNPERAPRLTHIVVMGMGEPLANLDNLLDALAVAGDKNGLGI 184

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R +T+ST G    I ++ E      LA+SLHA +++LR  +VP N K  ++ ++ A  
Sbjct: 185 GARHVTISTVGLPAKIRKLAESGKQYHLAVSLHAPNDELRTRIVPTNDKVGMDAILAAAD 244

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            +      R++T+EYV+L G+ND    A  L  +L+G  A +NLIP+N   G  +     
Sbjct: 245 EFYE-KTGRQVTYEYVVLGGLNDQAPHARQLAGLLRGRQAHVNLIPWNAVEGLAFKRPAD 303

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            D+    + ++R G S  +R  +G +I AACGQL+
Sbjct: 304 ADLQYLIDTLRRGGISVKVRKRKGAEIDAACGQLR 338


>gi|168059243|ref|XP_001781613.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666927|gb|EDQ53569.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 390

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 131/375 (34%), Positives = 203/375 (54%), Gaps = 40/375 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
           LIG  +EELE+ +L +G      + R  Q+++ IY   I+  + ++ + +++R+ + +  
Sbjct: 35  LIGKTQEELEDIVLSLG----EQKYRGKQMYQLIYKNKIKTVKELAQLPKQLRNAMTEAG 90

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGTLCVSSQV 122
           +SI    I     S DGT K LL+     +     +E V IP K      R T+CVSSQV
Sbjct: 91  WSIGRSPIHHVSTSKDGTVKILLKLEDNRL-----VEAVGIPVKDKEGNQRLTVCVSSQV 145

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C+FC TG     RNL A EI+ QVL            ED+         ++++NI
Sbjct: 146 GCALRCAFCATGKGGFARNLKAHEIVDQVL----------SIEDL-------FRQRVTNI 188

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLA 240
           V MGMGEPL N DNV  +    +    L   +R +T+ST G VPN  R     ++   LA
Sbjct: 189 VFMGMGEPLMNLDNVLDAHRTINKE--LQIGQRMMTISTVG-VPNTIRRLATHKLQSTLA 245

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA + +LR+ +VP  + YPL+ L++ C++Y   +  RR++FEY +L G+ND    A 
Sbjct: 246 ISLHAPNQELRSRIVPSAKGYPLDALMEDCKYY-FETTGRRLSFEYTLLAGVNDQREHAE 304

Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
            L  +L    +   +N+IP+NP    E+    +  ++ F E + +   ++ +R  RGLD 
Sbjct: 305 ELATLLHQWNLGRHVNIIPYNPIADSEFERPTKAKVLAFVETLSKRRVTASVRVTRGLDA 364

Query: 359 LAACGQLKSLSKRIP 373
            AACGQL++  ++IP
Sbjct: 365 NAACGQLRNEFQKIP 379


>gi|205829715|sp|Q8YZV0|RLMN_ANASP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 355

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 188/364 (51%), Gaps = 31/364 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    EL   + + G P      R  Q+  WIY +G+R    +S  S++ R  +    
Sbjct: 22  LLGASVTELTSWVQQQGQPA----YRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVAD-V 76

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I    I    ++ DGT K+LL+     I     +E V IP   R T+CVS+QVGC + C
Sbjct: 77  PIGRSTIHHRSVASDGTVKYLLQLSDGEI-----VEAVGIPTDKRLTVCVSTQVGCPMAC 131

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNL   EI+ QVL  +         ED +        +++S++V MGMG
Sbjct: 132 DFCATGKGGYKRNLERHEIVDQVLTVQ---------EDFQ--------QRVSHVVFMGMG 174

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EPL N +NV   L   +  +G+   +R +TLST G    I+ + E  + V LA+SLHA +
Sbjct: 175 EPLLNTENVLAGLRSLNQDVGIG--QRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAPN 232

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  R Y +E L+  CR Y  ++  RRI+FEY++L G+ND P  AL L K L+
Sbjct: 233 QALREQLIPSARSYHIEDLLAECREYVAIT-GRRISFEYILLAGVNDLPEHALELSKHLR 291

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G    +NLIP+N     +Y       I  F   +++   +  +R  RGL+  AACGQL++
Sbjct: 292 GFQNHVNLIPYNSIDEVDYKRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRT 351

Query: 368 LSKR 371
            + R
Sbjct: 352 KASR 355


>gi|300866402|ref|ZP_07111100.1| Ribosomal RNA large subunit methyltransferase N [Oscillatoria sp.
           PCC 6506]
 gi|300335612|emb|CBN56260.1| Ribosomal RNA large subunit methyltransferase N [Oscillatoria sp.
           PCC 6506]
          Length = 349

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 128/360 (35%), Positives = 186/360 (51%), Gaps = 31/360 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    EL   + + G P      R  Q+ +WIY +G+R    +S  S++ R  L  + 
Sbjct: 17  LLGANLAELTAWVQEQGQPA----YRAKQLHQWIYEKGVRSLSEISVFSKQWRESL-ANV 71

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I    I    ++ D T K+LL+     I     +E V IP + R T+CVSSQVGC + C
Sbjct: 72  PIGRSIIHHRSVAPDQTVKYLLKLADGQI-----VEAVGIPTEKRLTVCVSSQVGCPMAC 126

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     R+L   EI+ QVL  +    DF               R++S+IV MGMG
Sbjct: 127 DFCATGKGGFQRHLAKHEIVDQVLTVQE---DFK--------------RRVSHIVFMGMG 169

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EPL N +NV  ++   ++ +G+   +R IT+ST G    I  + E  + V LA+SLH  +
Sbjct: 170 EPLLNLENVVAAVKCLNEDVGIG--QRNITISTVGIRDRIRLLAEHHLQVTLAVSLHGSN 227

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  R Y  + L++ CR Y  ++  RR++ EY++L G+ND P  A  L   L+
Sbjct: 228 QKLREKLIPSARNYRFDELMEECREYVKIT-GRRLSVEYILLAGVNDLPEHAAELADNLR 286

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G    +NLIP+NP    +Y    Q  I  F E +K    +  +R  RGLD  AACGQL++
Sbjct: 287 GFQCHVNLIPYNPIAEADYERPSQYRIKVFVEALKARHIAVSVRYSRGLDADAACGQLRA 346


>gi|300854446|ref|YP_003779430.1| hypothetical protein CLJU_c12600 [Clostridium ljungdahlii DSM
           13528]
 gi|300434561|gb|ADK14328.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
          Length = 345

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 183/335 (54%), Gaps = 23/335 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI  WIY  G  DF  M++I +++   L  +F I   E+V +   C+   +   +F
Sbjct: 24  FRAKQIMDWIYKNGQCDFDNMTNIPKKLLEKLKTNFYIGTTELVKK---CESKFRDTFKF 80

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G + +ETV +  K   ++C+S+QVGC + C FC +    +VRNLTA E+L Q+L
Sbjct: 81  LYEYKDGNM-VETVVMKYKHGNSICISTQVGCRMGCKFCASTIDGMVRNLTAGEMLGQIL 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            +++                  +G +ISNIV+MG GEPL N++NV K L I +     + 
Sbjct: 140 KSQN-----------------EIGERISNIVLMGSGEPLDNYENVLKFLKIVNSEYSFNI 182

Query: 213 SKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            +R ITLST G VP I  + + ++ + LAISLHA ++ +R  ++PI  KY ++ +IDAC+
Sbjct: 183 GQRHITLSTCGIVPKIKDLADRDLQITLAISLHAPNDVMRKKIMPIANKYSIKDVIDACK 242

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      +R++FEY ++ G+NDS +    L +++ G+   +NLIP N         S  
Sbjct: 243 YYID-KTGKRVSFEYALVSGVNDSLKCCDELTELISGLLCHVNLIPVNEVKENNLKKSSS 301

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            D+  F   + ++   + IR   G DI AACGQL+
Sbjct: 302 DDVKKFYHRLIKNKIETTIRREMGSDIDAACGQLR 336


>gi|257065510|ref|YP_003145182.1| radical SAM enzyme, Cfr family [Slackia heliotrinireducens DSM
           20476]
 gi|256793163|gb|ACV23833.1| radical SAM enzyme, Cfr family [Slackia heliotrinireducens DSM
           20476]
          Length = 344

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 177/340 (52%), Gaps = 24/340 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WIY RG   +  M+++S+ +R  L++   +   EI+D+++S DGTRK++++F
Sbjct: 28  FRAKQLVQWIYGRGASTYDEMTNLSKALRQELSEKAPLRTAEIIDKQVSKDGTRKYVVQF 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                G  VE+  V +P + R T+C S+QVGC + CSFC TG +   RNL   E+L Q++
Sbjct: 88  YD---GAAVEM--VAMPYEDRMTVCFSTQVGCPMACSFCATGKEGFTRNLLPGEMLDQII 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A                    + R++SN+V MG GEPL N+DNV  +L  A+   G   
Sbjct: 143 IAEK-----------------DMNRRVSNLVGMGQGEPLLNYDNVMAALRFANSKDGRGI 185

Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+ST G +  I     E+    LA+SLH+   + R+ L+P     PL  L  A +
Sbjct: 186 GARHITISTCGILKGIDDFSREKEQFTLAVSLHSAIQETRDELMPKVANQPLFRLKSALQ 245

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y   +  RR T EY+M+ G ND       L+     +   +NLIP N   G  +  S +
Sbjct: 246 TYVKRT-GRRATLEYIMINGYNDDDDHLDALVDFCDDLLCHVNLIPLNNIEGSPWQPSSK 304

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           K    F   +  SG  + +R  RG DI  ACGQLK+  K+
Sbjct: 305 KQTQKFLNVLNASGTEATLRDSRGADIDGACGQLKNKRKQ 344


>gi|159904144|ref|YP_001551488.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
           MIT 9211]
 gi|205829806|sp|A9BCH2|RLMN_PROM4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|159889320|gb|ABX09534.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
           MIT 9211]
          Length = 356

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 194/376 (51%), Gaps = 37/376 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK  L+G    +LE+   + G P      R  QI +W+Y +G+R  + +S + +  R  L
Sbjct: 9   KKVVLLGQNVAKLEKLAQEYGEPA----FRGRQIHEWLYQKGVRKLEEISVLPKLWRTTL 64

Query: 65  -NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +Q       E V   ++ DGT K LL    R       IE V IP  SR T CVSSQVG
Sbjct: 65  SDQGVCTGRLEEVKRLVANDGTIKLLLETSDR-----ESIEAVGIPTNSRLTTCVSSQVG 119

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CS+ C FC TG     R+L   EI+ QVL  R                  +  R+ S+IV
Sbjct: 120 CSMGCRFCATGKGGFQRSLEVHEIVDQVLSIRE-----------------AFDRRPSHIV 162

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIG 236
            MGMGEPL N ++V +S+S  ++ +G+   +RRIT+ST G V  + ++ E        + 
Sbjct: 163 FMGMGEPLLNIESVLESISCLNNDLGIG--QRRITVSTVGVVNTLPQLAELALAKLGRVQ 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LA+SLHA +  LR +LVP  + YP++ L+  CRHY  ++  RRI+FEY++L  +ND  
Sbjct: 221 FTLALSLHAPNQHLREMLVPSAKVYPIQDLLSDCRHYLDIT-GRRISFEYILLATVNDKV 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L  ++ G  + +NLI +NP    +Y       I  F   ++  G +  +R  RGL
Sbjct: 280 EHAEELADLISGFQSHVNLIAYNPIDEEDYQRPSLARINRFMTVLQSRGVAVSLRASRGL 339

Query: 357 DILAACGQLKSLSKRI 372
           D  AACGQL+    R+
Sbjct: 340 DQDAACGQLRHQHTRL 355


>gi|148240394|ref|YP_001225781.1| Fe-S-cluster redox protein [Synechococcus sp. WH 7803]
 gi|205829913|sp|A5GNG9|RLMN_SYNPW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|147848933|emb|CAK24484.1| Predicted Fe-S-cluster redox enzyme [Synechococcus sp. WH 7803]
          Length = 351

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 191/370 (51%), Gaps = 37/370 (10%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           + ++L+G+   ELE    +  + Q     R  Q+  W+Y +G  D Q ++ + +  R  L
Sbjct: 6   QSKTLLGLGASELE----RWAVSQGQSAFRGRQLHDWLYAKGACDLQDITVLPKAWRASL 61

Query: 65  NQHFSII-YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
                II   +  D K++ D T K LL            +ETV IP   R T+CVSSQVG
Sbjct: 62  QDKGVIIGRLKEQDRKVAGDATTKLLL-----GTDDGETLETVGIPTDQRLTVCVSSQVG 116

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG   L R+L   EI+ QVL  R ++                  R+ S++V
Sbjct: 117 CPMACRFCATGKGGLQRSLYTHEIVAQVLSVREVME-----------------RRPSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG--- 236
            MGMGEPL N + V  ++   +D +G+   +RRIT+ST G    +P +A +  E +G   
Sbjct: 160 FMGMGEPLLNIEAVLDAIRCLNDDLGIG--QRRITVSTVGVPRTLPRLAELAMERLGRAQ 217

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LA+SLHA +  LR  L+P    YP + L+D CRHY  ++  RR++FEY++L G+ND P
Sbjct: 218 FTLAVSLHAPNQSLREELIPTAHAYPYDALLDDCRHYLAITG-RRVSFEYILLGGLNDHP 276

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L   + G  + +NLI +NP    E+    +  I  F   ++  G +  +R  RGL
Sbjct: 277 AHAEELADRVGGFQSHVNLIAYNPIEEEEFQRPTRDRIEGFRRVLESRGVAVSLRASRGL 336

Query: 357 DILAACGQLK 366
           D  AACGQL+
Sbjct: 337 DQDAACGQLR 346


>gi|219847237|ref|YP_002461670.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus
           aggregans DSM 9485]
 gi|219541496|gb|ACL23234.1| radical SAM enzyme, Cfr family [Chloroflexus aggregans DSM 9485]
          Length = 361

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 126/359 (35%), Positives = 191/359 (53%), Gaps = 30/359 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ-HFSIIYPE 74
           EL E L   G P      R  Q+++ +YV      + M+D+   +R  L +   S +  E
Sbjct: 13  ELTELLKAWGEPP----FRARQLYRHLYVNLTASVERMTDLPTTLRRRLAELPLSTLRLE 68

Query: 75  IVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
            V  +I   G TRK L R P   +     +ETV +    R T+CVS+Q GC + C FC T
Sbjct: 69  RV--QIGDAGLTRKALFRLPDGAV-----VETVLMVYPDRSTVCVSTQAGCGMGCVFCAT 121

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   L+RNL++ EI+ Q + A          +++  M       +++N+V MGMGEP  N
Sbjct: 122 GRLGLLRNLSSGEIVAQAIWA---------SQELRAMNAAGPSGRVTNLVFMGMGEPFAN 172

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
           +D   +++    D  G +   R +T+ST G V  I R+  E + + LAISLHA  + LR+
Sbjct: 173 YDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIERLANERLPINLAISLHAPDDTLRS 232

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK----- 307
            L+P+NR+YP+  L+ A R Y   +  RR++FEYV+L+G ND P  A+ L ++L+     
Sbjct: 233 ELMPVNRRYPIAELMAATRQYIAKTR-RRVSFEYVLLQGKNDHPHQAIALARLLRREAPP 291

Query: 308 -GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             I   +NLIP+NP PG     S+ + +  F + +   G    +R  RG++I AACGQL
Sbjct: 292 GPILVHVNLIPWNPVPGTPLGRSEWERVNAFQQILTDYGIPCTVRVERGVEIAAACGQL 350


>gi|87125371|ref|ZP_01081217.1| hypothetical protein RS9917_08135 [Synechococcus sp. RS9917]
 gi|86167140|gb|EAQ68401.1| hypothetical protein RS9917_08135 [Synechococcus sp. RS9917]
          Length = 350

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 193/376 (51%), Gaps = 41/376 (10%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++ E+L+G   EELE+  +  G P      R  Q+  W+Y +G      ++ + +  R  
Sbjct: 5   VRPETLLGRSAEELEQWAVAQGQPA----FRGRQLHDWLYAKGAETLAAITVLPKAWRLA 60

Query: 64  LN-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L  Q   I   +  D +++ D T K LL+     +     IETV IP   R T+CVSSQV
Sbjct: 61  LEAQGVRIGRLQEQDRRVAADATTKLLLQTDDGEL-----IETVGIPTDQRLTVCVSSQV 115

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L R+L   EI+ QVL  R+++                  R+ S++
Sbjct: 116 GCPMACRFCATGQGGLQRSLATHEIVDQVLSVRAVM-----------------DRRPSHV 158

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---------IARVGE 233
           V MGMGEPL N D V  ++    + +G+   +RRIT+ST G VP          +AR+G 
Sbjct: 159 VFMGMGEPLLNIDAVLGAIRCLHNDLGI--GQRRITVSTVG-VPRTLPQLAELAMARLG- 214

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
                LA+SLHA +  LR  L+P    YP + L+  CRHY  L+  RR++FEY++L G+N
Sbjct: 215 RAQFTLAVSLHAPNQALREELIPTAHAYPYDDLLQDCRHYLELTG-RRVSFEYILLGGLN 273

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D+P  A  L   + G  + +NLI +NP     +     + I  F   ++R G +  +R  
Sbjct: 274 DAPTHAEELADRVGGFQSHVNLIAYNPIEEGAFQRPSAERINGFRRVLERRGVAVSLRAS 333

Query: 354 RGLDILAACGQLKSLS 369
           RGLD  AACGQL+  S
Sbjct: 334 RGLDQDAACGQLRRRS 349


>gi|145352684|ref|XP_001420668.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580903|gb|ABO98961.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 254

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 106/244 (43%), Positives = 151/244 (61%), Gaps = 20/244 (8%)

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FCYT    L +NL+A +I+ QV+ AR ++G                  ++SN+V M
Sbjct: 1   MNCQFCYTAKMGLRKNLSAAQIVEQVVQARRMVG----------------ASEVSNVVFM 44

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V K++SI  D  GL FS+ ++T+STSG VP + R   E    LA+SL+A
Sbjct: 45  GMGEPLHNVDEVLKAVSILLDPKGLGFSRNKVTVSTSGLVPQMERFLRESEASLAVSLNA 104

Query: 246 VSNDLRNILVPINRKYPLEMLIDAC-RHYPGLS---NARRITFEYVMLKGINDSPRDALN 301
            ++ +RN ++PINRKY LEML+    R +P  S   + R++ FEY+ML+G+NDS  DA  
Sbjct: 105 TTDYIRNWIMPINRKYNLEMLLGLLRREFPRQSLGRHQRQVFFEYIMLEGVNDSDEDADR 164

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L++I + IP KINLI FN   G E+ CSDQ+ I  F + +  +G +  IR  RG + ++A
Sbjct: 165 LVEIARDIPCKINLIYFNTHDGSEFKCSDQERINAFRQRVSDAGVTCTIRQSRGDEEMSA 224

Query: 362 CGQL 365
           CGQL
Sbjct: 225 CGQL 228


>gi|17227851|ref|NP_484399.1| hypothetical protein all0355 [Nostoc sp. PCC 7120]
 gi|17129700|dbj|BAB72313.1| all0355 [Nostoc sp. PCC 7120]
          Length = 322

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 123/339 (36%), Positives = 179/339 (52%), Gaps = 27/339 (7%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+  WIY +G+R    +S  S++ R  +     I    I    ++ DGT K+LL+  
Sbjct: 10  RGKQLHDWIYHKGVRSLTDISVFSKQWRAAVAD-VPIGRSTIHHRSVASDGTVKYLLQLS 68

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              I     +E V IP   R T+CVS+QVGC + C FC TG     RNL   EI+ QVL 
Sbjct: 69  DGEI-----VEAVGIPTDKRLTVCVSTQVGCPMACDFCATGKGGYKRNLERHEIVDQVLT 123

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
            +         ED +        +++S++V MGMGEPL N +NV   L   +  +G+   
Sbjct: 124 VQ---------EDFQ--------QRVSHVVFMGMGEPLLNTENVLAGLRSLNQDVGIG-- 164

Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           +R +TLST G    I+ + E  + V LA+SLHA +  LR  L+P  R Y +E L+  CR 
Sbjct: 165 QRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIEDLLAECRE 224

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y  ++  RRI+FEY++L G+ND P  AL L K L+G    +NLIP+N     +Y      
Sbjct: 225 YVAIT-GRRISFEYILLAGVNDLPEHALELSKHLRGFQNHVNLIPYNSIDEVDYKRPSGD 283

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
            I  F   +++   +  +R  RGL+  AACGQL++ + R
Sbjct: 284 RIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRTKASR 322


>gi|317133046|ref|YP_004092360.1| radical SAM enzyme, Cfr family [Ethanoligenens harbinense YUAN-3]
 gi|315471025|gb|ADU27629.1| radical SAM enzyme, Cfr family [Ethanoligenens harbinense YUAN-3]
          Length = 342

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 194/369 (52%), Gaps = 32/369 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  L  M  EEL      +G P      +  Q++ W++ RG+  F  M+D S+  R +L
Sbjct: 3   EKRDLKSMDIEELGAFFRALGAPA----YKAKQVFAWLH-RGVGSFDEMTDQSKAFRAVL 57

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            +H  I   + V    S  DGT K+L       C+      ETV +      ++C+S+Q 
Sbjct: 58  EEHALITRVQTVRRLESVLDGTVKYLFALSDGECV------ETVMMRYSYGDSVCISTQA 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L R+L   E+L Q+L                  V    GRK+S++
Sbjct: 112 GCRMGCGFCASTLGGLHRSLAPSEMLDQIL-----------------AVTKDTGRKVSHV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG+GEPL N++NV K L + S   GL+ S R ++LST G V  I R+ EE + + L++
Sbjct: 155 VLMGIGEPLDNYENVVKFLHLLSCKGGLNMSLRHVSLSTCGLVDGIRRLMEEKLQLTLSV 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA ++ +R+ ++P+NRK+ +  L+ ACR Y   +  RRI+FEY M+ G+ND+P  A  
Sbjct: 215 SLHAPNDAIRSSIMPVNRKWGVNTLLAACRDYIE-ATGRRISFEYAMIDGVNDTPACAKE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L   L+G+   +NLIP NP     Y  S  + +  F   +   G +  +R   G DI A+
Sbjct: 274 LAARLRGMLCHVNLIPANPVKERSYQKSPAEKVERFRRLLAGFGLTVTVRRTLGADIQAS 333

Query: 362 CGQLKSLSK 370
           CGQL+  ++
Sbjct: 334 CGQLRQAAR 342


>gi|269127610|ref|YP_003300980.1| radical SAM enzyme, Cfr family [Thermomonospora curvata DSM 43183]
 gi|268312568|gb|ACY98942.1| radical SAM enzyme, Cfr family [Thermomonospora curvata DSM 43183]
          Length = 388

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 127/348 (36%), Positives = 186/348 (53%), Gaps = 33/348 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLNQHFSIIYPEIVDEKISCDG--TRKWL 89
            R  Q+ +  + R + D   M+D+   VR HL  +    +  E+    + CDG  TRK L
Sbjct: 62  FRAQQLSRHYFTRLVDDPAQMTDLPAAVREHLAAELLPTLLTEV--RALDCDGGATRKTL 119

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
            R       G + IE+V +    R T+CVSSQ GC + C FC TG   L RNL+  EI+ 
Sbjct: 120 WR----AFDGTL-IESVLMRYPDRITMCVSSQAGCGMNCPFCATGQAGLTRNLSTGEIVE 174

Query: 150 QVL-----LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
           QV+     LAR  +   PG              +ISNIV MGMGEPL N+  V  ++   
Sbjct: 175 QVVAGARALARGKIAGGPG--------------RISNIVFMGMGEPLANYKAVLGAIRRI 220

Query: 205 SDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKY 261
           +D    GL  S+R +T+ST G VP IAR+ +E + V LA+SLHA  ++LR+ LVP+N ++
Sbjct: 221 TDPAPDGLGISQRSVTVSTVGLVPAIARLADEGLSVRLAVSLHAPDDELRDELVPVNTRW 280

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321
            +  ++DA   Y   +  RR++ EY +++ +ND    A  L ++LKG    +NLIP NP 
Sbjct: 281 KVREVLDAAWAYADRTG-RRVSIEYALIRDVNDQAWRADLLGRLLKGHLVHVNLIPLNPT 339

Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           PG ++  S  +D   F   ++  G    +R  RG +I  ACGQL + +
Sbjct: 340 PGSKWTASRPRDEREFVARLQAHGVPVTVRDTRGREIDGACGQLAAAT 387


>gi|302851668|ref|XP_002957357.1| hypothetical protein VOLCADRAFT_42666 [Volvox carteri f.
           nagariensis]
 gi|300257316|gb|EFJ41566.1| hypothetical protein VOLCADRAFT_42666 [Volvox carteri f.
           nagariensis]
          Length = 307

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 116/295 (39%), Positives = 166/295 (56%), Gaps = 22/295 (7%)

Query: 81  SCDGTRKWLLRFP-ARCIGGPVEIETVYIP------EKSRGTLCVSSQVGCSLTCSFCYT 133
           + DGTRK +         GG VE  TV IP       + R T+CVSSQVGC++ C FCYT
Sbjct: 11  AADGTRKLVFTLTEGEAAGGSVE--TVLIPIVRQQGLRDRLTICVSSQVGCAMNCQFCYT 68

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   L+ NLT  +I+ QV+ AR  L         EG        +++N+V MGMGEPL N
Sbjct: 69  GRMGLLGNLTTAQIVEQVVEARRFLAQ-------EGERT-----QLTNLVFMGMGEPLHN 116

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253
            + V  +  I S  +GL  S  ++T+ST G VP +  V     V +A+SLHA ++++R+ 
Sbjct: 117 TEAVLAAADIVSHYLGLHISHNKVTISTVGLVPEMRSVVARSRVQMALSLHATTDEVRDW 176

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           +VP+NR+Y L  L  A     G S++R +  EY ML GIND+ +DA  L+ +L  +  K+
Sbjct: 177 IVPVNRRYDLATLTAALEEL-GNSSSRSLLIEYTMLHGINDTLQDAHRLVAMLARVNCKV 235

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           NLI FNP  G  +  S ++ +  F   + ++G    IR  RG D +AACGQL ++
Sbjct: 236 NLIMFNPHAGTRFQPSTEEAVTAFRSALVQAGMVCTIRDSRGDDEMAACGQLGNV 290


>gi|300087719|ref|YP_003758241.1| Cfr family radical SAM protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527452|gb|ADJ25920.1| radical SAM enzyme, Cfr family [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 341

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 180/360 (50%), Gaps = 31/360 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+GM   EL +    +G        R +Q+ +W+Y R       M+++    R+ L + 
Sbjct: 9   TLLGMNTAELRQLAETLG----QSAFRGNQLAEWLYHRDAAAIAEMTNLPAAFRYRLAEC 64

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           +    P ++  + S DGT K LL F         ++ETV +P   R + CVS+Q GC + 
Sbjct: 65  YPTGRPVVITRRQSDDGTLKLLLEF-----ADGEQVETVGLPYHDRYSCCVSTQAGCPVG 119

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC TG     R L+A EI+ QVL                  V    GR++ ++  MGM
Sbjct: 120 CAFCATGQGGYRRQLSAGEIVAQVL-----------------AVSREAGRRVDHVTFMGM 162

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246
           GEPL N+D   K+L +  D +G++   R +T+ST G VP I R+  E + V LA+SLH  
Sbjct: 163 GEPLLNYDATVKALHLLRDEVGIA--ARHLTVSTIGHVPGILRLARENLPVTLALSLHTP 220

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
               R  L+P  R  P E++     H+      RR+T EY +L G+ND P DA  L  +L
Sbjct: 221 DEVTRRRLIPGLRSTPAEIVTAGREHFA--LTGRRLTVEYCLLDGVNDRPEDASALAVLL 278

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +G    INLIPFNP     +  S    +  F   ++ +G+    R  RG DI AACGQL+
Sbjct: 279 EGTGFHINLIPFNPTDDLPFRPSPATTVERFMNRLRAAGFEVTARVRRGADIEAACGQLR 338


>gi|313205950|ref|YP_004045127.1| 23S rRNA m(2)a-2503 methyltransferase [Riemerella anatipestifer DSM
           15868]
 gi|312445266|gb|ADQ81621.1| 23S rRNA m(2)A-2503 methyltransferase [Riemerella anatipestifer DSM
           15868]
 gi|315022263|gb|EFT35291.1| radical SAM enzyme, Cfr family protein [Riemerella anatipestifer
           RA-YM]
 gi|325336610|gb|ADZ12884.1| Predicted Fe-S-cluster redox enzyme [Riemerella anatipestifer
           RA-GD]
          Length = 345

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/357 (36%), Positives = 196/357 (54%), Gaps = 26/357 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +EL++  + IG        R  Q++ W++ +     + M+++S+ +R  + Q F +I P 
Sbjct: 10  DELKDYFISIG----EKPFRAKQVYDWLWSKNGHSIEEMTNLSKNLRERIAQDF-VIKPV 64

Query: 75  IVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
            VD  + S DGT K  ++     +   + +E+V IP  +R T CVSSQVGCSL C FC T
Sbjct: 65  KVDLLQKSKDGTIKNGVK-----LHDGLMVESVLIPTDTRTTACVSSQVGCSLNCEFCAT 119

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
              K +RNL   EI+ QV L             I+        R +SNIV MGMGEP+ N
Sbjct: 120 ARLKRMRNLEVAEIVDQVAL-------------IDQQSKAYFDRPLSNIVFMGMGEPMMN 166

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
           + NV +++   ++  GL  S RRIT+STSG    I  + +E + V LA+SLH+     RN
Sbjct: 167 YKNVVEAIRKITEPEGLGMSPRRITVSTSGIPKMIKMLADENLKVKLALSLHSAIESKRN 226

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            ++P + K+PL  ++++ +++   + +  IT EY + KGIND+  D   LIK  K +P K
Sbjct: 227 EIMPFSTKFPLTDIMESLQYWYEKTGSI-ITLEYCIWKGINDTDEDIKALIKFCKKVPTK 285

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           +NLI +N     +Y  S+ K    + E ++R G +  IR  RG DI AACGQL + S
Sbjct: 286 VNLIEYNSIGDGKYDRSNPKATQNYVEQLERHGITVMIRRSRGGDIDAACGQLANKS 342


>gi|254431713|ref|ZP_05045416.1| radical SAM enzyme, Cfr family [Cyanobium sp. PCC 7001]
 gi|197626166|gb|EDY38725.1| radical SAM enzyme, Cfr family [Cyanobium sp. PCC 7001]
          Length = 354

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 188/376 (50%), Gaps = 48/376 (12%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L+GM   +LE      G P      R  Q+  W+Y +G R    +S + +  R    Q
Sbjct: 3   QPLLGMGLADLERWAQDQGQPA----FRGRQLHDWLYAKGARSLDAVSVLPKAWR---EQ 55

Query: 67  HFSIIYPEIVD---------EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
             +   P   D           ++ DGT K LL          + IETV IP   R T+C
Sbjct: 56  LLAEPPPGATDWIGRSRELHRSVARDGTTKLLL-----ATADGLSIETVGIPAPGRLTVC 110

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC + C FC TG   L R+L   EI+ QVL  R ++G+ P               
Sbjct: 111 VSSQVGCPMACRFCATGKGGLQRSLAVHEIVDQVLSVREVMGERP--------------- 155

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIA-RVGE 233
             S++V MGMGEPL N + V  ++      +G++  +R+IT+ST G    +P +A R  E
Sbjct: 156 --SHVVFMGMGEPLLNIEAVLAAIDCLCTDLGMA--QRQITVSTVGVPRTLPTLAERALE 211

Query: 234 EIG---VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            +G     LA+SLHA    LR  L+P    YP+E L+D CR Y  ++  RR++FEY++L 
Sbjct: 212 RLGRAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLDDCRRYVAITG-RRVSFEYILLG 270

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           G+ND P  A  L ++++G  + +NLIP+NP    E+       +  F   ++    +  +
Sbjct: 271 GLNDQPHHAEALARLIRGFQSHVNLIPYNPIEEEEFQRPSPAAVEAFRWALQERRVAVSV 330

Query: 351 RTPRGLDILAACGQLK 366
           R  RGLD  AACGQL+
Sbjct: 331 RASRGLDADAACGQLR 346


>gi|226366029|ref|YP_002783812.1| ribosomal RNA large subunit methyltransferase N [Rhodococcus opacus
           B4]
 gi|254807198|sp|C1B2V0|RLMN_RHOOB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|226244519|dbj|BAH54867.1| putative rRNA methyltransferase [Rhodococcus opacus B4]
          Length = 369

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/364 (36%), Positives = 198/364 (54%), Gaps = 36/364 (9%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E  EA+ ++G+P      R  Q+ +  Y R   D + M+D+   VR    Q  + ++P +
Sbjct: 28  ERREAVKELGLPG----FRADQLARQYYARLEADPEKMTDLPAAVRE---QVGAALFPTL 80

Query: 76  VD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
           +   + ++CDG  TRK L +     +     +E+V +    R TLC+SSQ GC + C FC
Sbjct: 81  LTAVKHLACDGGDTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQAGCGMACPFC 135

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   L RNL+  EI+ QV  A + L D     D+ G      GR +SN+V MGMGEPL
Sbjct: 136 ATGQGGLQRNLSTAEIVDQVRAAAAALRDG----DVHG----GPGR-LSNVVFMGMGEPL 186

Query: 192 CNFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246
            N+      V++  S A D +GL  S+R +T+ST G  P I ++  E++ V LA+SLH  
Sbjct: 187 ANYKRVVAAVRRITSPAPDGLGL--SQRSVTVSTVGLAPAIRKLADEDLSVTLAVSLHTP 244

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++LR+ LVP+N ++ +  ++DA R+Y   S  RR++ EY +++ +ND P  A  L K L
Sbjct: 245 DDELRDTLVPVNNRWSVAEVLDAARYYADKSG-RRVSIEYALIRDVNDQPWRADMLGKKL 303

Query: 307 K---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +   G    +NLIP NP PG E+  S +     F   +   G S  +R  RG +I AACG
Sbjct: 304 RKALGPLVHVNLIPLNPTPGSEWDASPKPVEKEFVRRVLAQGVSCTVRDTRGQEIAAACG 363

Query: 364 QLKS 367
           QL +
Sbjct: 364 QLAA 367


>gi|153815685|ref|ZP_01968353.1| hypothetical protein RUMTOR_01921 [Ruminococcus torques ATCC 27756]
 gi|331088258|ref|ZP_08337177.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145846926|gb|EDK23844.1| hypothetical protein RUMTOR_01921 [Ruminococcus torques ATCC 27756]
 gi|330408502|gb|EGG87968.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 355

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/354 (33%), Positives = 193/354 (54%), Gaps = 29/354 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL++ L ++G        R  QI++W++V+    F  M+++S ++R  L + + I   +
Sbjct: 18  EELQKELERLGEKP----FRAKQIYEWLHVKLADRFDEMTNLSVKLREKLAEEYDIFPVQ 73

Query: 75  IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           + + + S  DGT K+L R       G + +E+V +  K   ++C+SSQ GC + C FC +
Sbjct: 74  MAERQQSKLDGTNKFLFRL----YDGNM-VESVLMRYKHGNSVCISSQAGCRMGCVFCAS 128

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
               L RNL+A E+L Q+   + ++G+                 ++SN+V+MG GEPL N
Sbjct: 129 TIGGLKRNLSASEMLGQIYQIQKIIGE-----------------RVSNVVIMGTGEPLDN 171

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
           ++N  K + I +D  GL+ S+R +T+ST G VP I  + EE + + LA+SLH  + + R 
Sbjct: 172 YNNFLKFIHILTDEHGLNISQRNVTVSTCGIVPKILELAEERLQITLALSLHGSTQEKRR 231

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            L+P+  KY L  ++ AC  Y      RR+TFEY ++  +ND+  DA  L ++L      
Sbjct: 232 KLMPVANKYELGEVLSACDTYFK-KTGRRVTFEYSLVHEVNDTDEDAKELSELLAPRNCH 290

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +NLIP NP     +    +K  + F   +++SG +  IR   G DI  ACGQL+
Sbjct: 291 LNLIPVNPVKERSFQRPSRKSALNFKNKLEKSGINVTIRREMGSDIDGACGQLR 344


>gi|317501928|ref|ZP_07960112.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896608|gb|EFV18695.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 348

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/354 (33%), Positives = 193/354 (54%), Gaps = 29/354 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL++ L ++G        R  QI++W++V+    F  M+++S ++R  L + + I   +
Sbjct: 11  EELQKELERLGEKP----FRAKQIYEWLHVKLADRFDEMTNLSVKLREKLAEEYDIFPVQ 66

Query: 75  IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           + + + S  DGT K+L R       G + +E+V +  K   ++C+SSQ GC + C FC +
Sbjct: 67  MAERQQSKLDGTNKFLFRL----YDGNM-VESVLMRYKHGNSVCISSQAGCRMGCVFCAS 121

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
               L RNL+A E+L Q+   + ++G+                 ++SN+V+MG GEPL N
Sbjct: 122 TIGGLKRNLSASEMLGQIYQIQKIIGE-----------------RVSNVVIMGTGEPLDN 164

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
           ++N  K + I +D  GL+ S+R +T+ST G VP I  + EE + + LA+SLH  + + R 
Sbjct: 165 YNNFLKFIHILTDEHGLNISQRNVTVSTCGIVPKILELAEERLQITLALSLHGSTQEKRR 224

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            L+P+  KY L  ++ AC  Y      RR+TFEY ++  +ND+  DA  L ++L      
Sbjct: 225 KLMPVANKYELGEVLSACDTYFK-KTGRRVTFEYSLVHEVNDTDEDAKELSELLAPRNCH 283

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +NLIP NP     +    +K  + F   +++SG +  IR   G DI  ACGQL+
Sbjct: 284 LNLIPVNPVKERSFQRPSRKSALNFKNKLEKSGINVTIRREMGSDIDGACGQLR 337


>gi|296139393|ref|YP_003646636.1| radical SAM enzyme, Cfr family [Tsukamurella paurometabola DSM
           20162]
 gi|296027527|gb|ADG78297.1| radical SAM enzyme, Cfr family [Tsukamurella paurometabola DSM
           20162]
          Length = 371

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 196/369 (53%), Gaps = 32/369 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +  +EL++A++ +G+P    + R +Q+ +  Y R   D   M+D+    R  + +  
Sbjct: 21  LADLTDDELQQAVVDLGLP----KFRANQLARHYYGRLEADAATMTDLPASARGTVGE-- 74

Query: 69  SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             + PE++     I+ D   TRK L R     +     +E+V +    R TLC+SSQ GC
Sbjct: 75  -ALLPELMSPIRHIATDSGTTRKTLWRLHDGTL-----LESVLMRYTDRATLCISSQAGC 128

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ QV  A   + D        G V    GR +SN+V 
Sbjct: 129 GMACPFCATGQGGLDRNLSTAEIVDQVRSAAKAMQD--------GDVAGGPGR-LSNVVF 179

Query: 185 MGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V +++    +    GL  S+R +T+ST G  P I ++ +E + V LA+
Sbjct: 180 MGMGEPLANYKRVVQAVRRITSPAPEGLGISQRHVTVSTVGLAPAIRKLADEGLSVTLAV 239

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH   ++LR+ LVP+N ++ +  ++DA R+Y      RR++ EY +++ +ND P  A  
Sbjct: 240 SLHTPDDELRDTLVPVNNRWSVAEVLDAARYYAD-QTGRRVSIEYALIRDVNDQPWRADM 298

Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L + L+   G  A +NLIP NP PG E+  S +     F   +   G S  +R  RG +I
Sbjct: 299 LGEKLRTKLGQFAHVNLIPLNPTPGSEWDASPKDRQDEFVRRVIAQGVSCTVRDTRGQEI 358

Query: 359 LAACGQLKS 367
            AACGQL +
Sbjct: 359 AAACGQLAA 367


>gi|111023545|ref|YP_706517.1| hypothetical protein RHA1_ro06586 [Rhodococcus jostii RHA1]
 gi|123144166|sp|Q0S277|RLMN_RHOSR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|110823075|gb|ABG98359.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 369

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 201/373 (53%), Gaps = 36/373 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L  +   E  EA+ ++G+P      R  Q+ +  Y R   D + M+D+   VR    Q
Sbjct: 19  KHLADLDSAERREAVKELGLPG----FRADQLARQYYARLEADPEKMTDLPAAVRE---Q 71

Query: 67  HFSIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
             + ++P ++   + ++CDG  TRK L +     +     +E+V +    R TLC+SSQ 
Sbjct: 72  VGAALFPTLLTPVKHLACDGGDTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQA 126

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A + L D     D+ G      GR +SN+
Sbjct: 127 GCGMACPFCATGQGGLQRNLSTAEIVDQVRAAAAALRDG----DVHG----GPGR-LSNV 177

Query: 183 VMMGMGEPLCNFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGV 237
           V MGMGEPL N+      V++  S A D +GL  S+R +T+ST G  P I ++  E++ V
Sbjct: 178 VFMGMGEPLANYKRVVAAVRRITSPAPDGLGL--SQRSVTVSTVGLAPAIRKLADEDLSV 235

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLH   ++LR+ LVP+N ++ +  ++DA R+Y   S  RR++ EY +++ +ND P 
Sbjct: 236 TLAVSLHTPDDELRDTLVPVNNRWSVAEVLDAARYYADKSG-RRVSIEYALIRDVNDQPW 294

Query: 298 DALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            A  L K L+   G    +NLIP NP PG E+  S +     F   +   G S  +R  R
Sbjct: 295 RADLLGKKLRKALGPLVHVNLIPLNPTPGSEWDASPKPVEKEFVRRVLAQGVSCTVRDTR 354

Query: 355 GLDILAACGQLKS 367
           G +I AACGQL +
Sbjct: 355 GQEIAAACGQLAA 367


>gi|227872151|ref|ZP_03990521.1| Fe-S-cluster redox protein [Oribacterium sinus F0268]
 gi|227842009|gb|EEJ52269.1| Fe-S-cluster redox protein [Oribacterium sinus F0268]
          Length = 359

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 181/340 (53%), Gaps = 30/340 (8%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRF 92
           R  Q++ W++ + + ++  M++I + +R  L + +S+  PE      S  D T K+L R 
Sbjct: 36  RAEQLFSWLHEKAVEEYTEMTNIPKAMREKLAEGYSVALPEADLHLCSKMDDTEKFLFR- 94

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +    +IE+V++  +   + C+S+QVGC + C+FC +    L RN T  E+L Q+ 
Sbjct: 95  ----LSDGHKIESVFMRYQHGNSACISTQVGCRMGCAFCASTLDGLARNCTTGEMLGQIY 150

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
               L                  G++IS++V+MG GEPL N++ V + L I SD  G + 
Sbjct: 151 AMEKL-----------------TGQRISHVVLMGSGEPLDNYEEVTRFLRIISDEKGKNL 193

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S R ITLST G VP I  + +E  G+ LA+SLHA +++ R  ++PI  +Y L  ++ A +
Sbjct: 194 SIRNITLSTCGLVPRIYDLAKENYGITLALSLHAPTDEQRRKIMPIANRYSLSEIMPAVK 253

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG-----IPAKINLIPFNPWPGCEY 326
            Y      RR++FEY ++ G+ND   D   L  +LKG      P  +NLIP NP     +
Sbjct: 254 EYFK-KTGRRVSFEYALVLGVNDGEEDRKALADLLKGEKGEHFPCHVNLIPVNPIKERTF 312

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
              D+K +  F E +++ G +  +R   G DI  ACGQL+
Sbjct: 313 APPDRKRVYAFQEYLQKRGITCTVRREMGADIAGACGQLR 352


>gi|282859577|ref|ZP_06268681.1| radical SAM enzyme, Cfr family [Prevotella bivia JCVIHMP010]
 gi|282587628|gb|EFB92829.1| radical SAM enzyme, Cfr family [Prevotella bivia JCVIHMP010]
          Length = 344

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/368 (32%), Positives = 198/368 (53%), Gaps = 29/368 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+G    EL++   ++G+P         Q+ +W+YV+ ++    M++IS+  R  
Sbjct: 3   INKLPLLGKTLFELKQVAKELGLPA----FAGKQMAEWLYVKHVKSIDEMTNISKANREK 58

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L   ++I     +D + S DGT K+L  FP     G   +ETVYIP++ R TLCVSSQVG
Sbjct: 59  LESVYTIGCKAPIDAQHSQDGTIKYL--FPTE--RGKF-VETVYIPDEDRATLCVSSQVG 113

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    +L+A +IL Q+                    +P    K++NIV
Sbjct: 114 CKMNCLFCQTGKQGFEGSLSATDILNQIY------------------SLPERD-KLTNIV 154

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MG GEP+ N DNV ++  + +     ++S +RIT+S+ G    + R  +E    +AIS+
Sbjct: 155 FMGQGEPMDNLDNVLRTTELMTAEYAYAWSPKRITVSSVGLKSKLKRFLDESQCHVAISM 214

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  ++ R  ++P  +   ++ ++D  R+Y   S+ RR++FEY++  G NDS   A  ++
Sbjct: 215 HSPLHEQREEIMPAEKGMRIQEVVDLLRNYD-FSHQRRLSFEYIVFGGKNDSMEYAKAIV 273

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++KG+  + NLI F+  P      +D++ +  F + + + G  + IR  RG DI AACG
Sbjct: 274 DLVKGLDCRFNLIRFHQIPNVPLKGADRETMEKFRDYLTKHGVFTTIRASRGQDIFAACG 333

Query: 364 QLKSLSKR 371
            L +  K+
Sbjct: 334 LLSTAKKQ 341


>gi|145224701|ref|YP_001135379.1| radical SAM protein [Mycobacterium gilvum PYR-GCK]
 gi|205829813|sp|A4TC75|RLMN_MYCGI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145217187|gb|ABP46591.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium gilvum
           PYR-GCK]
          Length = 365

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/362 (35%), Positives = 191/362 (52%), Gaps = 36/362 (9%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E   A+  +G+P      R  Q+    + R I D   M+D+   VR   +Q  + ++PE+
Sbjct: 28  ERAAAVADLGLPA----FRGKQLANQYFGRLISDPSQMTDLPAGVR---DQVGAALFPEL 80

Query: 76  VD--EKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
           ++   +I CD   TRK L R   +        E+V +    R T+C+SSQ GC + C FC
Sbjct: 81  LEAAREIECDRGETRKVLWRAVDKTT-----FESVLMRYPDRNTVCISSQAGCGMACPFC 135

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   L RNL+  EIL QV  A + L D  G              ++SNIV MGMGEPL
Sbjct: 136 ATGQGGLKRNLSTAEILEQVRFASAELRDREGG-------------RLSNIVFMGMGEPL 182

Query: 192 CNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
            N++ V  ++    AS   G   S R +T+ST G  P I ++ +E + V LA+SLH   +
Sbjct: 183 ANYNRVVAAVRRITASSPHGFGISARSVTVSTVGLAPAIRKLADEKLNVTLAVSLHTPDD 242

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK- 307
           +LR+ LVP+N ++ ++ ++DA R+Y  L+  RR++ EY +++ +ND P  A  L + L  
Sbjct: 243 ELRDTLVPVNNRWKVDEVLDAARYYADLT-GRRVSIEYALIRDVNDQPWRADLLGRKLHA 301

Query: 308 --GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             G    +NLIP NP PG E+  S +     F   ++  G S  +R  RG +I AACGQL
Sbjct: 302 TLGPLVHVNLIPLNPTPGSEWDASPKPVEREFVRRVRAKGVSCTVRDTRGREIAAACGQL 361

Query: 366 KS 367
            +
Sbjct: 362 AA 363


>gi|312194967|ref|YP_004015028.1| radical SAM enzyme, Cfr family [Frankia sp. EuI1c]
 gi|311226303|gb|ADP79158.1| radical SAM enzyme, Cfr family [Frankia sp. EuI1c]
          Length = 397

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 187/369 (50%), Gaps = 30/369 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLLNQ 66
           L  + R+E     +++G P      R  Q+ +  + R     D  GM+D+   VR  L  
Sbjct: 39  LADLSRDERRAVAVELGQPA----FRADQLARHYFTRLATPGDTAGMTDVPAAVRAPLAD 94

Query: 67  HFSIIYPEIVDEKISCDG-TRK--WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
                           DG TRK  W      R + G   IE+V +    R T+CVSSQ G
Sbjct: 95  ALLPQLLTATTTLTCDDGATRKTAW------RTVDG-ATIESVLMRYPDRATVCVSSQAG 147

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISN 181
           C + C FC TG   L RNLT  EI+ QV+ A  +L  G  P  +  +         ++SN
Sbjct: 148 CGMGCPFCATGQGGLTRNLTVAEIVEQVVDAARVLRRGGLPAGQATD--------TRLSN 199

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVM 238
           +V MGMGEPL N+  +  +L   SD    GL  S R +T+ST G VP I R+ GE + V 
Sbjct: 200 VVFMGMGEPLANYKALVTALRRISDPAPDGLGISARTLTVSTVGLVPAIGRLAGEGLPVR 259

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ LVPIN ++ +  ++DA   Y   +  RRI+ EY ++ G+ND P  
Sbjct: 260 LAVSLHAPDDELRDTLVPINTRWKVAEVLDAAWDYAARTG-RRISIEYALIDGVNDQPER 318

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L ++L+  P  +NLIP NP  G  +  S       F   ++  G ++ +R  RG +I
Sbjct: 319 ADLLGRLLRDRPVHVNLIPLNPTRGSSWHASAPAGEREFVARLRARGITTTVRDTRGREI 378

Query: 359 LAACGQLKS 367
            AACGQL +
Sbjct: 379 AAACGQLAA 387


>gi|78188796|ref|YP_379134.1| hypothetical protein Cag_0825 [Chlorobium chlorochromatii CaD3]
 gi|123770876|sp|Q3ASD4|RLMN_CHLCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78170995|gb|ABB28091.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium chlorochromatii
           CaD3]
          Length = 366

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 190/372 (51%), Gaps = 32/372 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+ +   EL  A+   G P      R  QI +W++      F  MS +   +R  L + 
Sbjct: 15  NLVDLRYNELHNAITAFGEPP----FRAKQIHEWLFSHHANSFAAMSSLPLRLREKLAER 70

Query: 68  FSIIYPEIVDEKISCDG-----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           F++  PE+V+ + SC+      TRK LL+     +     IE V IP + R T C+SSQ 
Sbjct: 71  FTLQRPEVVEVQESCESGCLRPTRKILLKLSDGAL-----IECVLIPAEERMTACLSSQA 125

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C+FC TGT  L RNL+A EI  Q+               + G+ +   G+ I+N+
Sbjct: 126 GCPMQCTFCATGTMGLQRNLSAGEIWEQLY-------------ALNGLALQE-GKTITNV 171

Query: 183 VMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           V MGMGEPL N DNV +++ +++S +  LS S+R+IT+ST G VP I R+    +   LA
Sbjct: 172 VFMGMGEPLLNTDNVLEAIATMSSRNYNLSLSQRKITISTVGIVPEIERLSRSGLKTKLA 231

Query: 241 ISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           +SLH+   ++R  L+PI   +YPL +L  +   Y   +    IT  Y+ML G+NDS  DA
Sbjct: 232 VSLHSARQEVRQQLMPIAAERYPLPLLSKSLEAYSK-ATGEAITIVYMMLNGVNDSKEDA 290

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L +  +    KINLI +NP     +    +     F   +    +   +R   G  + 
Sbjct: 291 HLLARYCRHFSCKINLIDYNPILTIRFGSVQESQKNEFQAYLMAQKFHVTVRKSYGASVN 350

Query: 360 AACGQLKSLSKR 371
           AACGQL +  +R
Sbjct: 351 AACGQLVTQQQR 362


>gi|189485422|ref|YP_001956363.1| hypothetical protein TGRD_419 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|205829922|sp|B1H070|RLMN_UNCTG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|170287381|dbj|BAG13902.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 350

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 183/339 (53%), Gaps = 30/339 (8%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLRF 92
           R +QI +WIY +    F+  ++I +E+R+ L++ F +   +IV  EK   D T ++  R 
Sbjct: 33  RINQIIEWIYAKKAVSFESFTNIPKELRNKLDEKFFLRTLKIVKKEKSLIDSTIRYTFR- 91

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                        V++P   + ++C+SSQ+GC + C+FC +G  KL RNL+  EI+ Q+L
Sbjct: 92  ----TADKKYFFAVFLPANGKNSVCISSQIGCPIMCAFCSSGKTKLARNLSRGEIIEQIL 147

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                             V      KIS I+ MGMGEP+ NF+N+   L+    S     
Sbjct: 148 -----------------QVENDTKEKISGILFMGMGEPMLNFNNLISVLNSLLSSKEFGI 190

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            KR IT+S+ G VP + ++ ++  GV LA+SLHAV    R  LVP N  + +E ++ A +
Sbjct: 191 GKRHITVSSVGIVPAVKKLADDNFGVRLALSLHAVDERQRKKLVPDNLGFSIEDILKAGK 250

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGCEY 326
           +Y   +N+  +T EYV++KGIN S  DA  L ++LK         ++NLIPFNP    ++
Sbjct: 251 YYLKKTNS-HLTIEYVLVKGINISSADAHKLARLLKRCDLINSDVQVNLIPFNPVTDVQF 309

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              D+K I  F   +K +G +  +R  +G +I AACGQL
Sbjct: 310 QRPDKKSINKFKSILKLNGITVNVRQSKGANINAACGQL 348


>gi|256544909|ref|ZP_05472280.1| Cfr family radical SAM enzyme [Anaerococcus vaginalis ATCC 51170]
 gi|256399408|gb|EEU13014.1| Cfr family radical SAM enzyme [Anaerococcus vaginalis ATCC 51170]
          Length = 343

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 190/355 (53%), Gaps = 30/355 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +ELEE    +G      + R  Q+++ I+V  I DF  M+D+S+++R  L+Q       +
Sbjct: 13  KELEEIFKNLGFQ----KFRAKQVFRQIHVNKINDFSKMTDLSKDMRKKLDQILYFPKIK 68

Query: 75  IVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           I+ E K + D T+K+L       I     IE V++   +R T+C+SSQVGC + C+FC +
Sbjct: 69  ILKEFKSNLDKTKKYLFELDDGNI-----IEAVFMEYDNRNTICISSQVGCKMGCNFCAS 123

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
               L R+L A EI+ ++ L      D                  I+NIV+MG+GEPL N
Sbjct: 124 TKNGLERSLLASEIIEEIYLLERENSD------------------INNIVVMGIGEPLDN 165

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252
           F N++K + I +D  G + S R IT+ST G V  I ++ +    + LA+SLH   +  R 
Sbjct: 166 FSNIEKFIKIITDDNGRNLSHRAITISTVGLVDKIYKLADLGYDINLAVSLHYAFDKKRM 225

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
             +P  +KY ++ ++ AC +Y   +  RRI++EYV++ G+N+   D   L K+ KG    
Sbjct: 226 EYMPSAKKYKIKDIVKACDYYFEKT-KRRISYEYVVIDGVNNLKEDIDKLEKLFKGKNIH 284

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           INLIP NP    +Y  +    +  F + +   G ++ IR   G DI A+CGQL++
Sbjct: 285 INLIPLNPIEEFKYSKTKSNVMDQFQKKLSTRGLNATIRRSMGSDIDASCGQLRN 339


>gi|229826168|ref|ZP_04452237.1| hypothetical protein GCWU000182_01540 [Abiotrophia defectiva ATCC
           49176]
 gi|229789038|gb|EEP25152.1| hypothetical protein GCWU000182_01540 [Abiotrophia defectiva ATCC
           49176]
          Length = 348

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/364 (32%), Positives = 197/364 (54%), Gaps = 31/364 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  ++ +  +EL   + ++G P      RT QI++WI+ + ++ +  M+++   +R+ L+
Sbjct: 5   RNDIVSLNFDELASLIKELGEPA----FRTKQIYEWIHKKLVKGYDEMTNVPLALRNKLS 60

Query: 66  QHFSIIYPEI--VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           +     +PE+  V  K S  G      +F  +   G V IE+V +  +   ++C+SSQVG
Sbjct: 61  ERLP--FPELTEVARKDSASGDTS---KFVFKLYDGYV-IESVLMKYRYGNSVCISSQVG 114

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L R L   E+L Q+                   +    G ++SN+V
Sbjct: 115 CRMGCTFCASTLLGLSRQLAPSEMLSQIY-----------------TIQRETGERVSNVV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG GEPL NFDN+ K + + +D  GL+ S+R IT+ST G   NI R+ ++   + LAIS
Sbjct: 158 VMGTGEPLDNFDNLIKFIELLTDEKGLNISQRNITVSTCGLTENIKRLADKKFAITLAIS 217

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +++ R  ++PI  KY +  +++A  +Y      RRI++EY ++ G ND+P +A  L
Sbjct: 218 LHAPTDEDRKRIMPIANKYTISEIMEATDYYFD-KTGRRISYEYSLIDGENDTPENAEKL 276

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LKG    +NLIP NP     Y  S  K ++ F + ++  G +  IR   G DI AAC
Sbjct: 277 AVLLKGKNCHVNLIPVNPIKERTYRSSTPKGVIRFKKILENRGINVTIREEMGQDIDAAC 336

Query: 363 GQLK 366
           GQL+
Sbjct: 337 GQLR 340


>gi|291563554|emb|CBL42370.1| 23S rRNA m(2)A-2503 methyltransferase [butyrate-producing bacterium
           SS3/4]
          Length = 348

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 197/365 (53%), Gaps = 29/365 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+ L  M  EEL E + ++G        R  Q+++W++V+        +++ + ++  
Sbjct: 1   MEKKDLKSMTLEELTEFVKELG----EKPFRAKQLYQWMHVKLAESLDECTNLPKSLKEK 56

Query: 64  LNQHFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L+++ +    + V   +   DGTRK+L         G V IE+V +      ++C+SSQV
Sbjct: 57  LSEYSTYTSLKTVKMLESGIDGTRKYLFGLD----DGNV-IESVLMKYHHGNSVCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L RNL   E+L Q+                   +  S G ++SN+
Sbjct: 112 GCRMGCRFCASTLDGLTRNLRPSEMLDQIY-----------------RIQRSTGERVSNV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEP+ N+DN+ + + + SD  GL+ S+R IT+ST G VP I ++ EE + + LA+
Sbjct: 155 VVMGSGEPMDNYDNLIRFIRLLSDENGLNISQRNITVSTCGIVPKILKLAEEGLSITLAL 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++ R  L+PI   Y L  ++ AC+ Y      RR+TFEY +++G+ND+  +A  
Sbjct: 215 SLHAPDDETRKTLMPIANSYSLSEVLPACKEYYK-KTGRRLTFEYSLVQGVNDNLDEAKR 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LK +   +NLIP NP    ++  S++  I  F   +++ G +  IR   G DI  A
Sbjct: 274 LTALLKDMQGHVNLIPVNPIKERDFKQSNRDAIDAFRGYLEKHGINVTIRREMGRDIGGA 333

Query: 362 CGQLK 366
           CGQL+
Sbjct: 334 CGQLR 338


>gi|78045218|ref|YP_360312.1| radical SAM protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|123770585|sp|Q3AC22|RLMN_CARHZ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|77997333|gb|ABB16232.1| radical SAM enzyme, Cfr family [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 342

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 195/366 (53%), Gaps = 37/366 (10%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L  E ++  ++E  E++             R  QI +WI+  G  DF  M+++   +R  
Sbjct: 7   LNSEEIVAWLKENNEKSF------------RLKQINEWIFKHGELDFNKMTNLPVRLREK 54

Query: 64  LNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L ++F +   +I+  K S DG   K+LL+     +   + IE V +  +   T+C+S+QV
Sbjct: 55  LKENFLLPSLKIIHSKKSRDGQSIKYLLK-----LKDNLGIEAVLLKYRYGNTVCLSTQV 109

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG     RNLTA E++ Q+L+ ++                 S   KI+ +
Sbjct: 110 GCKMGCKFCATGLGGFSRNLTAGEMIEQILVLKA-----------------SSSEKITRV 152

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL NF  V K +   ++   L+ S R+IT+ST G VP I  + EE + V LAI
Sbjct: 153 VLMGSGEPLDNFTEVLKFMRKINEKDCLNISYRKITVSTCGMVPQIKALAEEKLPVTLAI 212

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  + LRN L+PIN+++ L  L+DA  ++      RR++FEY +++ +ND+   AL 
Sbjct: 213 SLHAPDDALRNELIPINKRWGLAELLDAAWYFID-KTGRRVSFEYALIENVNDTVEHALK 271

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++L+     +NLIP+N      +     + I  F E +KR+G    +R   G +I  A
Sbjct: 272 LAQLLQRKLVHVNLIPYNTIEKRNFKTPSVEKINKFKEVLKRAGIPVTVRRELGDEIDGA 331

Query: 362 CGQLKS 367
           CGQLK+
Sbjct: 332 CGQLKA 337


>gi|295106390|emb|CBL03933.1| 23S rRNA m(2)A-2503 methyltransferase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 349

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 185/357 (51%), Gaps = 29/357 (8%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           L++ +  +G P      R  Q+++W+Y+  +  +  M+++ Q +R  L+  + +  P ++
Sbjct: 19  LKQLMKDLGQPS----FRAKQLYEWLYLHHVGSYDEMTNLPQTLRVQLSADYPLFTPAVI 74

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSFCYTGT 135
           D + S DGT K+++ +          +ETV IP    R T+C S+Q GC++ C+FC TG 
Sbjct: 75  DSQTSQDGTAKYVISYH-----DGARVETVAIPSSDGRLTVCCSTQAGCAMGCTFCATGK 129

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
           +   RNL+A EI+ Q+L+A++ +G+                 ++SN+V+MG GEP  N++
Sbjct: 130 EGFTRNLSAGEIVDQILIAQTRMGE-----------------RVSNVVVMGQGEPFLNYE 172

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNIL 254
               +L I +D   L+   R ITLST G +  I R+G E     LA+SLHA     R+ +
Sbjct: 173 QTLNALHILNDEKLLNIGARHITLSTCGILSGIDRLGTEPEQFTLAVSLHAAIQRTRDKI 232

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
           +P    Y L  L      Y   +N RR T EY M+  +ND+  D   LI+   G+   +N
Sbjct: 233 MPGVANYGLGKLKTVLLKYIERTN-RRATLEYAMMNRVNDNEEDLKALIEFCTGLLCHVN 291

Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           LIP N     E+  S    +  +   + RSG  + IR  RG DI  ACGQLK+  K 
Sbjct: 292 LIPLNEIEESEFSPSKAPTMNHWYLTLNRSGIETTIRHSRGSDIAGACGQLKNAVKH 348


>gi|159462948|ref|XP_001689704.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283692|gb|EDP09442.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 358

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 198/374 (52%), Gaps = 44/374 (11%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL---- 64
           ++G    ELEE   + G P    R R  Q+ + + ++G R  + ++ I +E R  L    
Sbjct: 12  ILGRDTAELEELAARYGQP----RFRAKQLLEGV-LQGARSVEDITTIPKEWRAQLLADG 66

Query: 65  -NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
                S+++  + D     DGTRK+LL+     +G    +ETV IP + R T+CVSSQVG
Sbjct: 67  VRTGRSLLHHSVGD----ADGTRKFLLQ-----LGDGRIVETVGIPTEDRLTVCVSSQVG 117

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC TG     RNL   EI+ QVL  + L                  GR++SN+V
Sbjct: 118 CPMRCTFCATGKGGFARNLAPHEIMDQVLTVQELY-----------------GRRVSNVV 160

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAI 241
            MGMGEPL N  +V ++    +  +G+  +   IT+ST G VPN  R   G ++   LA+
Sbjct: 161 FMGMGEPLLNLPSVTRAYHGLNKQIGIGGAF--ITISTVG-VPNAIRRLAGADLKATLAV 217

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +  LR  ++P  + YP+E L++ C  Y      RR+TFEY +L G+ND    A  
Sbjct: 218 SLHAPNQALRESIIPSAKAYPIEALLEDCAAY-FKRTGRRVTFEYTLLSGVNDEVAHAQE 276

Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L+ +L+   + + +N+IP+NP    E+    +  +  F+  ++ +G    +R  RGL+  
Sbjct: 277 LVALLQRYNLMSHVNVIPWNPVDESEFQRPSRNRVFAFTRAVEAAGLPCTVRETRGLEAA 336

Query: 360 AACGQLKSLSKRIP 373
           AACGQL++  ++ P
Sbjct: 337 AACGQLRNQFQKTP 350


>gi|281356702|ref|ZP_06243193.1| radical SAM enzyme, Cfr family [Victivallis vadensis ATCC BAA-548]
 gi|281316829|gb|EFB00852.1| radical SAM enzyme, Cfr family [Victivallis vadensis ATCC BAA-548]
          Length = 344

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 178/340 (52%), Gaps = 27/340 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI  W+Y +GI + + M+++   VR L+   F      + +   S DGT K LL  
Sbjct: 26  FRGTQIADWVYKKGIVEPERMNNLPLPVRELIGNEFLAPGTAVTETAGSGDGTEKLLL-- 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IE V IP + R T C+S+QVGC + C FC +G   L+RNL A EIL + L
Sbjct: 84  ---TLQDGETIEMVLIPAEERLTFCLSTQVGCPVQCRFCASGRDGLIRNLAAGEILEEFL 140

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           L         GC           GR+  N+V MG+GE L NF  +  +L + S   G   
Sbjct: 141 L---------GCS--------RAGRRPDNLVFMGIGEGLLNFRELAATLEVLSSPEGFGM 183

Query: 213 SKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S RRIT+STSG+VP + +  E E    LAISLHA  ++ R+ L+P   +YP+  ++ A  
Sbjct: 184 SPRRITVSTSGYVPGMLKFAELEREFTLAISLHAPDDETRSRLIPDKLRYPVAEIMAAAD 243

Query: 272 HYPGLSNA-RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
            Y  L  A R +T EY +L+G ND+P  A  L  +      K+NLIP+N   G E+    
Sbjct: 244 LY--LRKAGRMVTLEYTLLEGFNDTPPHARALGALAVRHRCKVNLIPYNST-GGEFRRPS 300

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           ++ I  F E +  +G    +R  RG   +AACGQL++ +K
Sbjct: 301 RQAIREFEETVAAAGAHVTVRVERGAKSVAACGQLRTRAK 340


>gi|313639429|gb|EFS04292.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL S4-171]
          Length = 281

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 114/281 (40%), Positives = 174/281 (61%), Gaps = 19/281 (6%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IETV + ++   ++CV++QVGC++ C+FC +G  K  R+LTA EI+ Q++  +  L D  
Sbjct: 5   IETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGR 63

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
             E+           ++S++V+MG+GEP  N+DNV   L + +   GL+   R IT+STS
Sbjct: 64  NLEE-----------RVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTS 112

Query: 223 GFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G  P I     E+  V LAISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N RR
Sbjct: 113 GLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKTN-RR 171

Query: 282 ITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFS 338
           ITFEY+MLKG+ND  ++AL L  +L      A +NLIP+NP     +Y  S ++D++ F 
Sbjct: 172 ITFEYIMLKGVNDHKKEALELAGLLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFY 231

Query: 339 ECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
           + +K++G +  IR   G DI AACGQL+  SK+I +V  +E
Sbjct: 232 DTLKKNGINCVIRREHGTDIDAACGQLR--SKQIKRVGVRE 270


>gi|313634805|gb|EFS01235.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL N1-067]
          Length = 281

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 114/281 (40%), Positives = 174/281 (61%), Gaps = 19/281 (6%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IETV + ++   ++CV++QVGC++ C+FC +G  K  R+LTA EI+ Q++  +  L D  
Sbjct: 5   IETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGR 63

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
             E+           ++S++V+MG+GEP  N+DNV   L + +   GL+   R IT+STS
Sbjct: 64  NLEE-----------RVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTS 112

Query: 223 GFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G  P I     E+  V LAISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N RR
Sbjct: 113 GLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKTN-RR 171

Query: 282 ITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFS 338
           ITFEY+MLKG+ND  ++AL L  +L      A +NLIP+NP     +Y  S ++D++ F 
Sbjct: 172 ITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFY 231

Query: 339 ECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
           + +K++G +  IR   G DI AACGQL+  SK+I +V  +E
Sbjct: 232 DTLKKNGINCVIRREHGTDIDAACGQLR--SKQIKRVGIRE 270


>gi|291166481|gb|EFE28527.1| radical SAM enzyme, Cfr family [Filifactor alocis ATCC 35896]
          Length = 345

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 196/362 (54%), Gaps = 32/362 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L  M   E+EE +L +G      + R  QI+ ++  +G+     M  +S++ R  L + 
Sbjct: 4   DLRSMEYYEVEEVVLNLG----EKKYRAKQIYNFL-AKGVSSIDEMYTLSKDFREKLKER 58

Query: 68  FSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           + I   +I  + + + DGTRK+L+      +G    IETV +  K+  ++C+S+QVGC +
Sbjct: 59  YYICKTDIYHKLESNLDGTRKYLIE-----LGDGNLIETVLMIYKNGPSICLSTQVGCRM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +    LVRNLT  EI+ Q++  +  LG+                 +I+NIV+MG
Sbjct: 114 GCKFCASTVDGLVRNLTPGEIIGQMITVQKDLGE-----------------RIANIVIMG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--MLAISLH 244
            GEP  NFDN+ K L +  +  GL    R IT+ST G VP I R  E++G+   LAISLH
Sbjct: 157 SGEPFDNFDNLVKFLKLVHEDYGLQIGYRHITISTCGLVPKI-REMEKLGIPINLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            V  + R  ++PI + Y +E LI+A +HY  ++  RR+T+EY +++G+ DS  +A  L  
Sbjct: 216 QVEQNKREEIMPIAKVYDIEELIEAGKHYANVT-KRRVTYEYALIEGVTDSLEEAHKLGS 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG  + INLIP NP     +   + K +  F + +      + +R   G DI  ACGQ
Sbjct: 275 LLKGSLSLINLIPINPIKEKSFKKPNLKRVQAFQKVLLNYHIITTVRRELGSDINGACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|330950791|gb|EGH51051.1| radical SAM protein [Pseudomonas syringae Cit 7]
          Length = 220

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 103/232 (44%), Positives = 139/232 (59%), Gaps = 19/232 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P           +V R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVP----------ATVDRAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDV 219


>gi|255535320|ref|YP_003095691.1| radical SAM enzyme, Cfr family protein [Flavobacteriaceae bacterium
           3519-10]
 gi|255341516|gb|ACU07629.1| radical SAM enzyme, Cfr family protein [Flavobacteriaceae bacterium
           3519-10]
          Length = 358

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 127/358 (35%), Positives = 195/358 (54%), Gaps = 28/358 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EEL+   + +G        R  Q+++W++ + +     M+++S+++R  + Q ++I  P 
Sbjct: 24  EELQNYFVTLG----EKPFRAKQVYEWLWSKNLHSIDEMTNLSKDLREKIAQEYTI-NPI 78

Query: 75  IVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
            VD+ + S DGT K  ++     +     +E+V IP ++R T CVSSQVGCSL C FC T
Sbjct: 79  SVDQLQKSSDGTIKNGVKLHDGLL-----VESVLIPTETRTTACVSSQVGCSLNCEFCAT 133

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
              K +RNL   EI+ QV L             I+        R +SNIV MGMGEP+ N
Sbjct: 134 ARLKRMRNLEVAEIVDQVAL-------------IDRQSKMYFDRPLSNIVFMGMGEPMMN 180

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
           + NV +++   +   GL  + RRIT+STSG    I  + +E + V LA+SLH+     RN
Sbjct: 181 YKNVVEAIRKITAPDGLGMAPRRITVSTSGIPKMIKMLADENLRVNLALSLHSAIEKTRN 240

Query: 253 ILVPINRKYPLEMLIDACRH-YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
            ++P + ++PL  ++D+ +H Y    N   +TFEY + KGIND   D   LI+  K IP 
Sbjct: 241 EIMPFSDRFPLTDIMDSLKHWYEKTGNI--VTFEYCVWKGINDEDEDIKALIRYCKQIPC 298

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           K+NLI +NP    +Y   ++     +   ++ +G +  IR  RG DI AACGQL + S
Sbjct: 299 KVNLIQYNPIGDGKYDRCNKAAEENYVRQLENAGITVLIRRSRGGDIDAACGQLANKS 356


>gi|26554015|ref|NP_757949.1| hypothetical protein MYPE5630 [Mycoplasma penetrans HF-2]
 gi|81747712|sp|Q8EVK0|RLMN_MYCPE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|26454023|dbj|BAC44353.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 352

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 197/363 (54%), Gaps = 31/363 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S+     +EL++ L K  I          QI+ WIY + +  F  M +IS+E    L Q 
Sbjct: 5   SIYSFTLQELKKELTKNNIKA----FVAEQIFDWIYSKHVDSFDEMKNISKENIEKLKQL 60

Query: 68  FSIIYPEIVDEKISCD---GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           FS  +  +V +K+  D   GT K+LL+       G   IETV +      ++CV+SQ+GC
Sbjct: 61  FS--FENMVVDKLQVDKHDGTVKFLLKLE----DGNF-IETVIMKFNYGYSVCVTSQIGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC +G  +  RN+T  E + Q ++A+               V  +   K++++V+
Sbjct: 114 NMACKFCASGLIRKKRNITVGEFIKQFIIAKEY-------------VEKNFNDKLTHMVV 160

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MG+GEP  NF+N+ +   +     GL  S R+IT+ST G V  I    + +  V LAI L
Sbjct: 161 MGIGEPFDNFENLIQFFEVIKQQKGLCISPRKITVSTCGLVEKIKEFADLKNQVNLAILL 220

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N++RN ++PIN+ Y L+ +I+A  +Y  ++  RR+T EY+++K +NDS  +A+ L 
Sbjct: 221 HAPNNEIRNKIMPINKVYSLDKVIEAMDYYIKVT-KRRVTIEYILIKDVNDSDENAVELA 279

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKG    +NLIP+N      Y  S +     F + +K++   + IR  RG  I AACG
Sbjct: 280 KLLKGKLCYVNLIPYNKVVENNYFRSVRGK--QFFDVLKKNNIQATIRLERGSSIDAACG 337

Query: 364 QLK 366
           QL+
Sbjct: 338 QLR 340


>gi|284929286|ref|YP_003421808.1| 23S rRNA m(2)A-2503 methyltransferase [cyanobacterium UCYN-A]
 gi|284809730|gb|ADB95427.1| 23S rRNA m(2)A-2503 methyltransferase [cyanobacterium UCYN-A]
          Length = 341

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 198/365 (54%), Gaps = 31/365 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           LK++ L+G   EEL   + + G P      R  Q+ +W+Y +GI+  + +S   +  R  
Sbjct: 3   LKQDILLGKSIEELTNWVEERGQPN----YRGKQLHQWLYHKGIKSLEEVSVFPKNWRKE 58

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           +   + +    I    ++ D TRK+LL      I     IETV IP   R T+CVSSQVG
Sbjct: 59  IAD-YPVGRSSINQLIVAPDKTRKYLLNLQDGLI-----IETVGIPTSKRLTVCVSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG     RNLT  EI+ Q+L  +         ED +        +++S++V
Sbjct: 113 CPMKCDFCATGKGDFKRNLTCAEIIDQILTVQ---------EDFQ--------QRVSHVV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
            MGMGEPL N   + K++ I +  +G+   +R +T+ST G    I      ++ +  A+S
Sbjct: 156 FMGMGEPLLNIKEIIKAIKIINQDIGIG--QRSLTISTVGIPEKIIEFANHKLQITFAVS 213

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +  LR  L+P ++ Y L  LI+ C+ Y  ++  RR+TFEY++L+ +NDS   A+ L
Sbjct: 214 LHASNQILREKLIPTSKFYTLSSLINDCKKYVEITK-RRLTFEYILLEEVNDSLEQAVEL 272

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+LKG    +NLIP+NP    +Y  S  + I  F   +++ G ++ IR  RGL+  AAC
Sbjct: 273 AKLLKGFQNHVNLIPYNPIEEVKYKRSSPQRIKAFCYQLEKYGITTSIRYSRGLETHAAC 332

Query: 363 GQLKS 367
           GQL++
Sbjct: 333 GQLRA 337


>gi|229491476|ref|ZP_04385300.1| radical SAM enzyme, Cfr family [Rhodococcus erythropolis SK121]
 gi|229321761|gb|EEN87558.1| radical SAM enzyme, Cfr family [Rhodococcus erythropolis SK121]
          Length = 369

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 195/364 (53%), Gaps = 36/364 (9%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E +EA+ ++G+P      R  Q+ +  Y R   D + M+D+   VR  + +    ++P +
Sbjct: 28  ERKEAVKELGLPA----FRADQLARQYYARLEADPEKMTDLPASVREKVGES---LFPTL 80

Query: 76  VD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
           +   + ++CD   TRK L +     +     +E+V +    R TLC+SSQ GC + C FC
Sbjct: 81  LTPIKHLACDSGDTRKTLWKAHDGTL-----LESVLMRYPDRATLCISSQAGCGMACPFC 135

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   L RNL+  EI+ QV  A + + D        G V    GR +SN+V MGMGEPL
Sbjct: 136 ATGQGGLDRNLSTAEIVDQVREAAAAMRD--------GEVAGGPGR-LSNVVFMGMGEPL 186

Query: 192 CNFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
            N+      V++  S A D +GL  S+R +T+ST G  P I ++ +E + V LA+SLH  
Sbjct: 187 ANYKRVVAAVRRITSPAPDGLGL--SQRSVTVSTVGLAPAIRKLADEGLSVTLAVSLHTP 244

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++LR+ LVP+N ++ +  ++ A R+Y      RR++ EY M+K +ND P  A  L K L
Sbjct: 245 DDELRDTLVPVNNRWSVSEVLQAARYYAD-KTGRRVSIEYAMIKNVNDQPWRADMLGKKL 303

Query: 307 K---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K   G    +NLIP NP PG E+  S +     F   +   G S  +R  RG +I AACG
Sbjct: 304 KKALGGLVHVNLIPLNPTPGSEWDASPKDVEREFVRRVIAQGVSCTVRDTRGQEIAAACG 363

Query: 364 QLKS 367
           QL +
Sbjct: 364 QLAA 367


>gi|139439867|ref|ZP_01773232.1| Hypothetical protein COLAER_02266 [Collinsella aerofaciens ATCC
           25986]
 gi|133774795|gb|EBA38615.1| Hypothetical protein COLAER_02266 [Collinsella aerofaciens ATCC
           25986]
          Length = 350

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 191/367 (52%), Gaps = 28/367 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           K + +  + + ++ E + ++G P      R  Q+ +W++ + +  F  M+++ +  R  L
Sbjct: 6   KSQDIRDLSQNDIRELVAELGQPA----FRAKQLIEWVFEKNVCSFDDMTNLPKAFREQL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + F+   P  + +++S DG+RK+LL +        V +ETV +P +++ ++CVS+Q GC
Sbjct: 62  KEAFAFDTPTELTKQVSKDGSRKYLLEY-----HDGVSVETVGMPRRNKLSVCVSTQAGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC TG   L R+LTA+EI+ QVL    +  DF              G + +++V 
Sbjct: 117 GMGCAFCATGLNGLKRSLTAQEIVDQVL---HVSNDF--------------GERATSVVF 159

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MG GEP  N+D V K+L I +D  G+    R +T+STSG +P I +  +      LA+SL
Sbjct: 160 MGQGEPFANYDEVLKALRILNDPDGIGIGARHLTVSTSGVIPGIRKFADIPEQFTLAVSL 219

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     RN L+P  +KY L  L +A + Y      RR T+EY M++G+ND+  +   L 
Sbjct: 220 HSAIQSTRNKLMPGVKKYTLFRLHEALQLYTE-KTGRRPTYEYAMIEGVNDTNPEMQALC 278

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
              +G    +NLI  N   G     S    +      ++  G  + IR  RG DI AACG
Sbjct: 279 DFCEGTLCHVNLIQLNDIEGSPLKPSPIHKVEDLQRRLESRGIETTIRNSRGNDIDAACG 338

Query: 364 QLKSLSK 370
           QLK   K
Sbjct: 339 QLKQRFK 345


>gi|325673450|ref|ZP_08153141.1| cfr family radical SAM enzyme [Rhodococcus equi ATCC 33707]
 gi|325555471|gb|EGD25142.1| cfr family radical SAM enzyme [Rhodococcus equi ATCC 33707]
          Length = 369

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 199/369 (53%), Gaps = 32/369 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +  +E +EA+ ++G+P      R  Q+ +  Y R   D   M+D+   +R  +    
Sbjct: 21  LADLDADERKEAVKELGLPG----FRADQLARQYYGRLEADADKMTDLPAGMREKVG--- 73

Query: 69  SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + ++P ++D  + ++CD   TRK L +     +     +E+V +    R TLC+SSQ GC
Sbjct: 74  AALFPRLLDVVKHVACDAGQTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQAGC 128

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ QV  A + L D        G V    GR +SNIV 
Sbjct: 129 GMACPFCATGQGGLDRNLSTAEIVDQVRAAAAALRD--------GEVEGGPGR-LSNIVF 179

Query: 185 MGMGEPLCNFDNVKKSL-SIASDSM-GLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           MGMGEPL N+  V  ++  I S S  GL  S+R +T+ST G  P I ++  EE+ V LA+
Sbjct: 180 MGMGEPLANYKRVVAAVRRITSPSPDGLGISQRAVTVSTVGLAPAIRKLADEEMSVRLAV 239

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH   ++LR+ LVP+N ++ +  ++DA R+Y   S  RR++ EY +++ +ND P  A  
Sbjct: 240 SLHTPDDELRDTLVPVNNRWAVAEVLDAARYYADKSG-RRVSIEYALIRDVNDQPWRADM 298

Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L K L    G    +NLIP NP PG ++  S +     F   ++  G S  +R  RG +I
Sbjct: 299 LGKKLHKALGPLVHVNLIPLNPTPGSKWDASPKPVEREFVRRVQAQGVSCTVRDTRGQEI 358

Query: 359 LAACGQLKS 367
            AACGQL +
Sbjct: 359 AAACGQLAA 367


>gi|317968945|ref|ZP_07970335.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
           CB0205]
          Length = 365

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 190/371 (51%), Gaps = 42/371 (11%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67
           L+GM    LE+   + G        R  Q+  W+Y +G R    +S + +  R  L  Q 
Sbjct: 14  LLGMGLSALEQWAKQHG----QAAFRGRQLHDWLYAKGARSLDQVSVLPKAFREELAAQP 69

Query: 68  FSIIYPEI-----VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            +  +  +     +   I+ DGT K LL          + IETV IP + R T+CVSSQV
Sbjct: 70  PAAAFDWMGRSRELHRSIASDGTTKLLL-----GTHDQLSIETVGIPAEGRLTVCVSSQV 124

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L R+L   EI+ QVL  R ++   P                 S++
Sbjct: 125 GCPMACRFCATGKGGLQRSLAVHEIVDQVLSVREVMDQRP-----------------SHV 167

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG-- 236
           V MGMGEPL N ++V  ++      +G++  +R+IT+ST G    +P +A +  E +G  
Sbjct: 168 VFMGMGEPLLNVESVLSAIDCLCTDLGMA--QRQITVSTVGVPRTLPRLAELALERLGRA 225

Query: 237 -VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              LA+SLHA    LR  L+P    YP+E L++ CR Y  ++  RR++FEY++L G+ND 
Sbjct: 226 QFTLAVSLHAPDQRLREELIPTAHAYPIEALLEDCRRYVEITG-RRVSFEYILLGGLNDQ 284

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           PR A  L ++L+G  + +NLIP+NP    E+     + +  F   +     +  +R  RG
Sbjct: 285 PRHAAALAQLLRGFQSHVNLIPYNPIQEEEFQRPTPQAVEAFRRALMDRHVAVSVRASRG 344

Query: 356 LDILAACGQLK 366
           LD  AACGQL+
Sbjct: 345 LDADAACGQLR 355


>gi|110597428|ref|ZP_01385715.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
 gi|110340972|gb|EAT59443.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
          Length = 362

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 195/368 (52%), Gaps = 30/368 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++I +   EL+ A+  +  P      R +QI +W++    + F+ M+ +S+ +R  L + 
Sbjct: 10  NIIDLSFPELQHAIASLDEPS----FRAAQIHQWLFSHQAKSFEEMTTLSRTLRQKLAET 65

Query: 68  FSIIYPEIVD-----EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           FSI + ++VD     E+   + T K LL+ P   +     IETV IP ++R T C+SSQ 
Sbjct: 66  FSISHLQLVDHLESTEESGDNLTEKILLKLPDNEL-----IETVLIPAENRLTACLSSQA 120

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+  C+FC TG   L RNLTA EI  QV    +++           M  P   +KI+NI
Sbjct: 121 GCAFQCTFCATGKMGLHRNLTAGEIAGQVYALNAIV----------SMRKPD--KKITNI 168

Query: 183 VMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           V MGMGEPL N+DN+ +S+ ++ + +  ++ S+++IT+ST G +P I ++G   +   LA
Sbjct: 169 VFMGMGEPLMNYDNILESIETLTTKNYNVTLSQKKITISTVGVIPQIRKLGASGLKTKLA 228

Query: 241 ISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           +SLHA     R  L+P+  K YPL  L  A   Y   + A  +T  Y++ KGINDS  DA
Sbjct: 229 VSLHAAEQQKRESLMPVAAKLYPLNELGKALAGYSS-ATAMPVTIVYMLQKGINDSLEDA 287

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L +   G   KINLI +N      +   +      F + +  SG    +R   G  I 
Sbjct: 288 KLLARFAHGFLCKINLIDYNSIINIRFKPVNSSSREVFQQYLIDSGLHVTVRKSYGTTIN 347

Query: 360 AACGQLKS 367
           AACGQL +
Sbjct: 348 AACGQLAT 355


>gi|312139245|ref|YP_004006581.1| radical sam protein [Rhodococcus equi 103S]
 gi|311888584|emb|CBH47896.1| radical SAM protein [Rhodococcus equi 103S]
          Length = 369

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 199/369 (53%), Gaps = 32/369 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +  +E +EA+ ++G+P      R  Q+ +  Y R   D   M+D+   +R  +    
Sbjct: 21  LADLDADERKEAVKELGLPG----FRADQLARQYYGRLEADADKMTDLPAGMREKVG--- 73

Query: 69  SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + ++P ++D  + ++CD   TRK L +     +     +E+V +    R TLC+SSQ GC
Sbjct: 74  AALFPRLLDVVKHVACDAGQTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQAGC 128

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ QV  A + L D        G V    GR +SNIV 
Sbjct: 129 GMACPFCATGQGGLDRNLSTAEIVDQVRAAAAALRD--------GEVEGGPGR-LSNIVF 179

Query: 185 MGMGEPLCNFDNVKKSL-SIASDSM-GLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           MGMGEPL N+  V  ++  I S S  GL  S+R +T+ST G  P I ++  EE+ V LA+
Sbjct: 180 MGMGEPLANYKRVVAAVRRITSPSPDGLGISQRAVTVSTVGLAPAIRKLADEEMSVRLAV 239

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH   ++LR+ LVP+N ++ +  ++DA R+Y   S  RR++ EY +++ +ND P  A  
Sbjct: 240 SLHTPDDELRDTLVPVNNRWSVAEVLDAARYYADKSG-RRVSIEYALIRDVNDQPWRADM 298

Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L K L    G    +NLIP NP PG ++  S +     F   ++  G S  +R  RG +I
Sbjct: 299 LGKKLHKALGPLVHVNLIPLNPTPGSKWDASPKPVEREFVRRVQAQGVSCTVRDTRGQEI 358

Query: 359 LAACGQLKS 367
            AACGQL +
Sbjct: 359 AAACGQLAA 367


>gi|226306037|ref|YP_002765997.1| rRNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|259491995|sp|C0ZY23|RLMN_RHOE4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|226185154|dbj|BAH33258.1| putative rRNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 369

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 195/364 (53%), Gaps = 36/364 (9%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E +EA+ ++G+P      R  Q+ +  Y R   D + M+D+   VR  + +    ++P +
Sbjct: 28  ERKEAVKELGLPA----FRADQLARQYYARLEADPEKMTDLPASVREKVGES---LFPTL 80

Query: 76  VD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
           +   + ++CD   TRK L +     +     +E+V +    R TLC+SSQ GC + C FC
Sbjct: 81  LTPIKHLACDSGDTRKTLWKAHDGTL-----LESVLMRYPDRATLCISSQAGCGMACPFC 135

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   L RNL+  EI+ QV  A + + D        G V    GR +SN+V MGMGEPL
Sbjct: 136 ATGQGGLDRNLSTAEIVDQVREAAAAMRD--------GDVAGGPGR-LSNVVFMGMGEPL 186

Query: 192 CNFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
            N+      V++  S A D +GL  S+R +T+ST G  P I ++ +E + V LA+SLH  
Sbjct: 187 ANYKRVVAAVRRITSPAPDGLGL--SQRSVTVSTVGLAPAIRKLADEGLSVTLAVSLHTP 244

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++LR+ LVP+N ++ +  ++ A R+Y      RR++ EY M+K +ND P  A  L K L
Sbjct: 245 DDELRDTLVPVNNRWSVSEVLQAARYYAD-KTGRRVSIEYAMIKNVNDQPWRADMLGKKL 303

Query: 307 K---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K   G    +NLIP NP PG E+  S +     F   +   G S  +R  RG +I AACG
Sbjct: 304 KKALGGLVHVNLIPLNPTPGSEWDASPKDVEREFVRRVIAQGVSCTVRDTRGQEIAAACG 363

Query: 364 QLKS 367
           QL +
Sbjct: 364 QLAA 367


>gi|212634296|ref|YP_002310821.1| hypothetical protein swp_1448 [Shewanella piezotolerans WP3]
 gi|212555780|gb|ACJ28234.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 242

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 106/233 (45%), Positives = 143/233 (61%), Gaps = 6/233 (2%)

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
           ++G      D  G V  +  R I+N+VMMGMGEPL N  NV  ++ I  D  G S SKRR
Sbjct: 6   IVGQIWRVADFIGFVKDTGERPITNVVMMGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRR 65

Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           +T+STSG VP +  +G+ + V LA+S+HA +++LR++LVP+N+KYPLE  +   R Y   
Sbjct: 66  VTVSTSGVVPALDILGDALDVALAVSIHAPNDELRDVLVPVNKKYPLEDFLAGIRRYIAK 125

Query: 277 SNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334
           SNA   R+T EYVML  INDS   A  L K++K  P K+NLIPFNP+PG  Y  S    I
Sbjct: 126 SNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRI 185

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQEMQIT 383
             FS+ +   G +  +R  RG DI AACGQL    +  +KR+ K   Q+ QI+
Sbjct: 186 DRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRLAKKQMQQNQIS 238


>gi|41409041|ref|NP_961877.1| hypothetical protein MAP2943c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81571119|sp|Q73VR8|RLMN_MYCPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|41397400|gb|AAS05260.1| hypothetical protein MAP_2943c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 364

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 191/357 (53%), Gaps = 34/357 (9%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFSIIYPEIVDE 78
           A+ ++G+P      R  Q+    Y R I D + M+D+   +R  + +  F I+       
Sbjct: 30  AVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAGLRDAIADTMFPILL--TAAS 83

Query: 79  KISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
           +++CD   TRK L R     + G V +E+V +    R T+C+SSQ GC + C FC TG  
Sbjct: 84  EVTCDAGQTRKTLWR----ALDG-VTVESVLMRYPHRNTVCISSQAGCGMACPFCATGQG 138

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
            L RNL+  EIL QV    + L D               G ++SN+V MGMGEPL N+  
Sbjct: 139 GLSRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMGMGEPLANYAR 185

Query: 197 VKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
           V  ++   +A+   G   S R +T+ST G  P I ++ +E +GV LA+SLHA  ++LR+ 
Sbjct: 186 VVAAVRRIVAAPPQGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSLHAPDDELRDT 245

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIP 310
           LVP+N ++ +   +DA R+Y  ++  RR++ EY +++ +ND P  A  L + L    G  
Sbjct: 246 LVPVNNRWKIAEALDAARYYADVTG-RRVSVEYALIRDVNDQPWRADLLGRRLHRALGPL 304

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             +NLIP NP PG ++  S +     F   ++ +G S  +R  RG +I AACGQL +
Sbjct: 305 VHVNLIPLNPTPGSQWDASPKPVEREFVRRVRAAGVSCTVRDTRGREISAACGQLAA 361


>gi|254819036|ref|ZP_05224037.1| hypothetical protein MintA_03871 [Mycobacterium intracellulare ATCC
           13950]
          Length = 367

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 128/355 (36%), Positives = 194/355 (54%), Gaps = 31/355 (8%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFSIIYPEIVDE 78
           A+ ++G+P      R  Q+    Y R I D + M+D+   +R  + +  F I+   +   
Sbjct: 30  AVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAGLRDAIADTMFPILLTAV--S 83

Query: 79  KISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
           +++CD   TRK L R     + G V +E+V +    R T+C+SSQ GC + C FC TG  
Sbjct: 84  EVACDAGETRKTLWR----ALDG-VTVESVLMRYPQRNTVCISSQAGCGMACPFCATGQG 138

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
            L RNL+  EIL QV  A ++L D  G         PS  +++SN+V MGMGEPL N+  
Sbjct: 139 GLSRNLSTAEILEQVRAAAAVLRDDFGP--------PS--QRLSNVVFMGMGEPLANYAR 188

Query: 197 VKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
           V  ++   IA+   G   S R +T+ST G  P I ++ +E + V LA+SLHA  ++LR+ 
Sbjct: 189 VVAAVRRIIAAPPHGFGISARSVTVSTVGLAPAIRKLADEGLAVTLALSLHAPDDELRDT 248

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIP 310
           LVP+N ++ +   +DA R+Y  ++  RR++ EY +++ +ND P  A  L + L    G  
Sbjct: 249 LVPVNNRWKIAEALDAARYYADVTG-RRVSVEYALIRDVNDQPWRADLLGQRLHRALGPL 307

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             +NLIP NP PG E+  S +     F   ++  G S  +R  RG +I AACGQL
Sbjct: 308 VHVNLIPLNPTPGSEWDASPKAVEREFVRRVRAKGVSCTVRDTRGREISAACGQL 362


>gi|108798974|ref|YP_639171.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium sp.
           MCS]
 gi|119868089|ref|YP_938041.1| radical SAM protein [Mycobacterium sp. KMS]
 gi|126434574|ref|YP_001070265.1| radical SAM protein [Mycobacterium sp. JLS]
 gi|122977121|sp|Q1BAG9|RLMN_MYCSS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829816|sp|A3PXZ7|RLMN_MYCSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829817|sp|A1UEJ3|RLMN_MYCSK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|108769393|gb|ABG08115.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. MCS]
 gi|119694178|gb|ABL91251.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. KMS]
 gi|126234374|gb|ABN97774.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. JLS]
          Length = 374

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 128/355 (36%), Positives = 189/355 (53%), Gaps = 27/355 (7%)

Query: 23  KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKI 80
           ++G+P      R  Q+    Y R   D Q M+D+   VR    Q    ++P+++    +I
Sbjct: 35  ELGLPA----FRAKQLATQYYGRLTADPQQMTDLPAAVRE---QVAEALFPDLLTAVREI 87

Query: 81  SCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138
             D   TRK L R     + G    E+V +    R T+C+SSQ GC + C FC TG   L
Sbjct: 88  ETDAGETRKVLWR----AVDG-TTFESVLMRYSDRNTVCISSQAGCGMACPFCATGQGGL 142

Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198
            RNL+  EIL QV  A   L D     D EG+   + G ++SNIV MGMGEPL N++ V 
Sbjct: 143 QRNLSTAEILEQVRAAAVELRD----RDGEGIAPAARGGRLSNIVFMGMGEPLANYNRVI 198

Query: 199 KSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255
            ++   +A    G   S R +T+ST G  P I ++ +E + V LA+SLHA  ++LR+ LV
Sbjct: 199 AAVRRIVAPPPDGFGISARSVTVSTVGLAPAIRKLADERLNVTLALSLHAPDDELRDTLV 258

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---K 312
           P+N ++ +   +DA R+Y  ++  RR++ EY +++ +ND P  A  L K L G       
Sbjct: 259 PVNNRWKVSEALDAARYYADVTG-RRVSIEYALIRDVNDQPWRADLLGKRLHGALGPLVH 317

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +N+IP NP PG E+  S +     F   ++  G S  +R  RG +I AACGQL +
Sbjct: 318 VNVIPLNPTPGSEWDASPKPAEREFVRRVRERGVSCTVRDTRGREIAAACGQLAA 372


>gi|315445031|ref|YP_004077910.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. Spyr1]
 gi|315263334|gb|ADU00076.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. Spyr1]
          Length = 365

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 127/362 (35%), Positives = 190/362 (52%), Gaps = 36/362 (9%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E   A+  +G+P      R  Q+    + R I D   M+D+   VR   +Q  + ++P +
Sbjct: 28  ERAAAVADLGLPA----FRGKQLANQYFGRLISDPSQMTDLPAGVR---DQVAAALFPAL 80

Query: 76  VD--EKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
           ++   +I CD   TRK L R   +        E+V +    R T+C+SSQ GC + C FC
Sbjct: 81  LETAREIECDRGETRKVLWRAVDKTT-----FESVLMRYPDRNTVCISSQAGCGMACPFC 135

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   L RNL+  EIL QV  A + L D  G              ++SNIV MGMGEPL
Sbjct: 136 ATGQGGLKRNLSTAEILEQVRFASAELRDRDGG-------------RLSNIVFMGMGEPL 182

Query: 192 CNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
            N++ V  ++    AS   G   S R +T+ST G  P I ++ +E + V LA+SLH   +
Sbjct: 183 ANYNRVVAAVRRITASSPHGFGISARSVTVSTVGLAPAIRKLADEKLNVTLAVSLHTPDD 242

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK- 307
           +LR+ LVP+N ++ ++ ++DA R+Y  L+  RR++ EY +++ +ND P  A  L + L  
Sbjct: 243 ELRDTLVPVNNRWKVDEVLDAARYYADLTG-RRVSIEYALIRDVNDQPWRADLLGRKLHA 301

Query: 308 --GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             G    +NLIP NP PG E+  S +     F   ++  G S  +R  RG +I AACGQL
Sbjct: 302 KLGPLVHVNLIPLNPTPGSEWDASPKPVEREFVRRVRAKGVSCTVRDTRGREIAAACGQL 361

Query: 366 KS 367
            +
Sbjct: 362 AA 363


>gi|149371549|ref|ZP_01890965.1| hypothetical protein SCB49_09100 [unidentified eubacterium SCB49]
 gi|149355176|gb|EDM43736.1| hypothetical protein SCB49_09100 [unidentified eubacterium SCB49]
          Length = 346

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 196/363 (53%), Gaps = 26/363 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+ +  + +EEL +  + +G        R +Q+++W++ +G   F+ M+++S E R  L
Sbjct: 4   EKKDIRALTKEELRDFFVALGDKA----FRGNQVYEWLWSKGAHTFEAMTNLSLETRSHL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F I + ++   + S DGT K  ++     I     +E+V IP KSR T CVSSQVGC
Sbjct: 60  EANFVINHIKVDSIQRSNDGTIKNAVKLHDGLI-----VESVLIPTKSRTTACVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C FC T   K +RNL  +EI  QV+             D E  +  ++   +SNIV 
Sbjct: 115 SLDCLFCATSRLKRMRNLNPDEIYDQVVAI-----------DKESRLYHNI--PLSNIVY 161

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--LAIS 242
           MGMGEPL N+ NV  S+   +   GL  S +RI +STSG VP + +   + GV   LA+S
Sbjct: 162 MGMGEPLMNYKNVLASIEKITSPEGLGMSPKRIVVSTSG-VPKMIKKMADDGVRFNLAVS 220

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+   + R  ++P  + + L+ L DA  ++   +N R IT+EYV+ K IND   D   L
Sbjct: 221 LHSAIQETREEIMPFAKSFTLDDLRDALIYWYEKTN-RAITYEYVVWKDINDKKVDIDAL 279

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           ++    +P K+NLI +NP    ++  +    +  +   ++++     +R  RG DI AAC
Sbjct: 280 VRFCAHVPCKVNLIEYNPIDDGKFQQAQDAAVDAYISSLEKARVPVTVRRSRGKDIDAAC 339

Query: 363 GQL 365
           GQL
Sbjct: 340 GQL 342


>gi|269977915|ref|ZP_06184869.1| radical SAM enzyme, Cfr family [Mobiluncus mulieris 28-1]
 gi|269933881|gb|EEZ90461.1| radical SAM enzyme, Cfr family [Mobiluncus mulieris 28-1]
          Length = 401

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 183/350 (52%), Gaps = 23/350 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI +  + R   D Q M+D++   R L  Q    + P+++   ++    + W  + 
Sbjct: 53  FRADQIARHYFGRFEADPQLMTDLNARDRELAAQ----LLPQLITPVVTKTADQDWTQKT 108

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
             R   G  E+E+V +    R TLCVSSQVGC + C FC TG   L RNL+A EIL QV 
Sbjct: 109 LWRLFDG-AEVESVLMRYPKRVTLCVSSQVGCGMGCPFCATGQLGLARNLSAGEILEQVR 167

Query: 153 L-ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMG 209
             AR+      G ++           ++SNIV MGMGEPL N+  +  SL    A    G
Sbjct: 168 FSARAAATGALGGQET----------RLSNIVFMGMGEPLSNYRALLTSLRTITAPVPQG 217

Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
              S R + +ST G VP I R+  E I V LA+SLHA  ++LR+ L+P+NR Y +  L+D
Sbjct: 218 FGISARNLVVSTVGMVPGIRRLASEGIPVTLAVSLHAPDDELRDALIPMNRHYKVGQLLD 277

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCE 325
           A   Y  ++  RR++ EY +++ +ND P  A  L   L       A +N IP NP PG  
Sbjct: 278 AAHEYFEIT-GRRVSIEYALIRDMNDHPWRAQLLADELNKRGKTWAHVNPIPLNPTPGSI 336

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
           +  S  + +  F+  +++SG S+ +R  RG DI  ACGQL + SK   K 
Sbjct: 337 WTASLPRVMEEFTSILRQSGISTTLRDTRGSDIDGACGQLATASKNHKKT 386


>gi|326382905|ref|ZP_08204595.1| ribosomal RNA large subunit methyltransferase N [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198495|gb|EGD55679.1| ribosomal RNA large subunit methyltransferase N [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 371

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 192/366 (52%), Gaps = 41/366 (11%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD- 77
           +A+  +G+P    + R +Q+ K  Y R   D   M+D+    R  + +    ++P ++  
Sbjct: 33  DAVADLGLP----KFRANQLAKQYYGRLNADVDEMTDLPAGKRDAVGEK---LFPTLMTP 85

Query: 78  -EKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
              ISCD   TRK L R     +     +E+V +    R TLC+SSQ GC + C FC TG
Sbjct: 86  VRHISCDDDSTRKTLWRLHDGTL-----LESVLMRYPERNTLCISSQAGCGMACPFCATG 140

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR--KISNIVMMGMGEPLC 192
              L RNL+  EI+ QV  A   L D              VG   ++SNIV MGMGEPL 
Sbjct: 141 QGGLDRNLSTAEIVDQVRAAARALRDG------------EVGEPGRLSNIVFMGMGEPLA 188

Query: 193 NF----DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           N+    D V+K  S + D  G+  S R +T+ST G  P I R+ +E + V LA+SLH   
Sbjct: 189 NYKRVVDAVRKITSPSPDGFGI--SARSVTVSTVGLAPAIRRLADEGLSVTLAVSLHTPD 246

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           ++LR+ LVP+N ++ +  +++A R+Y   S  RR++ EY +++ +ND P  A  L K L+
Sbjct: 247 DELRDTLVPVNNRWSVAEVLEAARYYAD-STGRRVSIEYALIRDVNDQPWRADLLGKKLR 305

Query: 308 ---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
              G    +NLIP NP PG E+  S +     F   ++  G S  +R  RG +I AACGQ
Sbjct: 306 QALGSLVHVNLIPLNPTPGSEWDASPKPVEAEFVRRVREHGVSCTVRDTRGQEIAAACGQ 365

Query: 365 LKSLSK 370
           L +  K
Sbjct: 366 LAAEEK 371


>gi|54026096|ref|YP_120338.1| ribosomal RNA large subunit methyltransferase N [Nocardia farcinica
           IFM 10152]
 gi|81373742|sp|Q5YS67|RLMN_NOCFA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|54017604|dbj|BAD58974.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 369

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 129/363 (35%), Positives = 195/363 (53%), Gaps = 32/363 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           E+   A+ ++G+P    + R  QI +  Y R   D   M+D+   VR    Q  + ++P 
Sbjct: 27  EQRRAAVAELGLP----KFRADQIARQYYGRLEADPARMTDLPAPVRE---QIGAALFPR 79

Query: 75  IVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
           ++D  + ++CD   TRK L R      G    +E+V +    R TLC+SSQ GC + C F
Sbjct: 80  LLDVVKHVACDDGRTRKTLWR-----AGDGTLLESVLMRYADRNTLCISSQAGCGMACPF 134

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TG   L RNL+  EI+ QV  A + L D        G V    GR +SNIV MGMGEP
Sbjct: 135 CATGQGGLNRNLSTAEIVDQVRAAAAALRD--------GAVAGGPGR-LSNIVFMGMGEP 185

Query: 191 LCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           L N+  V  ++    A    GL  S+R + +ST G  P I ++ +E + V LA+SLH   
Sbjct: 186 LANYKRVVAAVRRITAPAPDGLGISQRNVVVSTVGLAPAIRKLADEGLSVTLAVSLHTPD 245

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL-IKIL 306
           ++LR+ LVP+N ++P+  ++DA R+Y   +  RR++ EY +++ IND P  A  L  K+ 
Sbjct: 246 DELRDTLVPVNNRWPVAEVLDAARYYAD-TTGRRVSVEYALIRDINDQPWRADMLGAKLH 304

Query: 307 KGIPAK--INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           K + ++  +N+IP NP PG ++  S +     F   +   G    +R  RG +I AACGQ
Sbjct: 305 KALGSRVHVNVIPLNPTPGSKWDASPKPVEREFVRRVNEQGVPCTVRDTRGQEIAAACGQ 364

Query: 365 LKS 367
           L +
Sbjct: 365 LAA 367


>gi|269792997|ref|YP_003317901.1| radical SAM enzyme, Cfr family [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100632|gb|ACZ19619.1| radical SAM enzyme, Cfr family [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 462

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 180/339 (53%), Gaps = 31/339 (9%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLL 90
           R R  Q+  W Y R + +FQ MSD+S E+R+ L+  F +  P+++  + S  DGT+K+L 
Sbjct: 25  RFRADQVCGWFYRRHVFEFQLMSDLSLELRNRLDGAFRVGLPKMLGMRASGRDGTKKFLF 84

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
            F          +E+V I    R T CVS+QVGC L C FC TG     RN+T  E++ Q
Sbjct: 85  DFDG------SSVESVAIWHPGRITACVSTQVGCPLGCPFCATGQSGFERNMTVGEMVGQ 138

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
            L   + LG+                  I N+V MGMGEP+ N+ N+  ++   +     
Sbjct: 139 FLAMEARLGE------------------IKNLVFMGMGEPMLNYHNLIGAIRNLNHPKMR 180

Query: 211 SFSKRRITLSTSGFVP---NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
               R IT+STSG +P   N+AR  E +GV LA+SLHA +++LR+ LVPIN +YPL+ L 
Sbjct: 181 GLGIRHITVSTSGIIPGILNLAR--EGLGVRLAVSLHAPNDELRDQLVPINAQYPLKELK 238

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
            A   Y  ++   RIT EY +   +NDS   A  L + LKG+ A +NLIP +      + 
Sbjct: 239 RALMEYQEIT-GDRITIEYSLFDQVNDSVPMARQLGEYLKGLSAFVNLIPGSCVGDQRFR 297

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            S    +  F + +   GY   +R  +G D+  ACGQL+
Sbjct: 298 PSPPFRVRAFGDLLTAMGYPVAMRQSKGSDVGGACGQLR 336


>gi|55297177|dbj|BAD68852.1| florfenicol resistance protein-like [Oryza sativa Japonica Group]
          Length = 247

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/240 (42%), Positives = 143/240 (59%), Gaps = 14/240 (5%)

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC+TG   L ++L+  EI+ Q + AR L  D  G               I+N+V M
Sbjct: 1   MNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFG--------------SITNVVFM 46

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N DNV K+ +I  D  GL FS R++T+STSG VP I R  +E    LA+SL+A
Sbjct: 47  GMGEPLHNIDNVLKASAIMVDEQGLQFSPRKVTVSTSGLVPQIKRFLQESNCALAVSLNA 106

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN ++PINRKY L +L+   R    L    ++ FEYVML G+NDS  DA  L+ +
Sbjct: 107 TTDEVRNWIMPINRKYNLSLLLGTLREEIRLKKKYKVFFEYVMLAGVNDSVDDAKRLVDL 166

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIP KINLI FNP  G ++  +  + I+ F   + + G    +R  RG D +AACGQL
Sbjct: 167 VRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNILIQDGLVVFVRLSRGDDQMAACGQL 226


>gi|254776158|ref|ZP_05217674.1| hypothetical protein MaviaA2_16010 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 364

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 190/355 (53%), Gaps = 34/355 (9%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFSIIYPEIVDE 78
           A+ ++G+P      R  Q+    Y R I D + M+D+   +R  + +  F I+       
Sbjct: 30  AVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAGLRDAIADTMFPILL--TAAS 83

Query: 79  KISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
           +++CD   TRK L R     + G V +E+V +    R T+C+SSQ GC + C FC TG  
Sbjct: 84  EVTCDAGQTRKTLWR----ALDG-VTVESVLMRYPQRNTVCISSQAGCGMACPFCATGQG 138

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
            L RNL+  EIL QV    + L D               G ++SN+V MGMGEPL N+  
Sbjct: 139 GLSRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMGMGEPLANYAR 185

Query: 197 VKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
           V  ++   +A+   G   S R +T+ST G  P I ++ +E +GV LA+SLHA  ++LR+ 
Sbjct: 186 VVAAVRRIVAAPPQGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSLHAPDDELRDT 245

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIP 310
           LVP+N ++ +   +DA R+Y  ++  RR++ EY +++ +ND P  A  L + L    G  
Sbjct: 246 LVPVNNRWKIAEALDAARYYADVTG-RRVSVEYALIRDVNDQPWRADLLGQRLHRALGPL 304

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             +NLIP NP PG ++  S +     F   ++ +G S  +R  RG +I AACGQL
Sbjct: 305 VHVNLIPLNPTPGSQWDASPKPVEREFVRRVRAAGVSCTVRDTRGREISAACGQL 359


>gi|302334811|ref|YP_003800018.1| 23S rRNA m(2)A-2503 methyltransferase [Olsenella uli DSM 7084]
 gi|301318651|gb|ADK67138.1| 23S rRNA m(2)A-2503 methyltransferase [Olsenella uli DSM 7084]
          Length = 359

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 187/371 (50%), Gaps = 28/371 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++  L  M   +L E L  +G P      R  QI +W++ + +  F  MS++ + +R  L
Sbjct: 16  QRRDLRAMSHGQLLELLGDLGQPG----FRAKQIEEWVWEKNVSSFDDMSNLPKSLRAHL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +Q  S+  P  V  + S DG+RK+LLR+        V +E V +P +++  +C S+Q GC
Sbjct: 72  SQACSLGGPREVGRQQSSDGSRKYLLRYE-----DGVSVECVGMPTRNKLAVCASTQAGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +++C+FC TG   L R+LTA EI  QV+ AR    DF                +++++V+
Sbjct: 127 AMSCAFCATGAAGLTRSLTAGEIYEQVMHARD---DFNA--------------RVTSVVL 169

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISL 243
           MG GEP  N+D    +L   +   G     R +T+ST G +P I R  GE     LA+SL
Sbjct: 170 MGQGEPFMNYDATLGALRRLNSPEGAGIGARHLTVSTCGIIPMIKRFAGEPEQFTLAVSL 229

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R++L+P  RKY L  L +    Y      RR T+EY ++KG+NDS  +   L 
Sbjct: 230 HSAVQRTRDMLMPGVRKYSLLHLYEIMEEYVD-KTGRRPTYEYALIKGVNDSEDEMGALC 288

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
              +G  A +NLI  N      +  S  +    F   +   G  + IR  RG DI AACG
Sbjct: 289 DFCRGNLAHVNLIRLNDVKDSPFQPSSDRRAEEFVRRLGAVGVDATIRNSRGSDIDAACG 348

Query: 364 QLKSLSKRIPK 374
           QL+   +R+ +
Sbjct: 349 QLRQEMERLSR 359


>gi|227875938|ref|ZP_03994061.1| possible Fe-S-cluster redox protein [Mobiluncus mulieris ATCC
           35243]
 gi|307700221|ref|ZP_07637262.1| 23S rRNA m2A2503 methyltransferase [Mobiluncus mulieris FB024-16]
 gi|227843470|gb|EEJ53656.1| possible Fe-S-cluster redox protein [Mobiluncus mulieris ATCC
           35243]
 gi|307614603|gb|EFN93831.1| 23S rRNA m2A2503 methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 401

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 182/350 (52%), Gaps = 23/350 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI +  + R   D Q M+D++   R L  Q    + P+++   ++    + W  + 
Sbjct: 53  FRADQIARHYFGRFEADPQLMTDLNARDRELAAQ----LLPQLITPVVTKTADQDWTQKT 108

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
             R   G  E+E+V +    R TLCVSSQVGC + C FC TG   L RNL+A EIL QV 
Sbjct: 109 LWRLFDG-AEVESVLMRYPKRVTLCVSSQVGCGMGCPFCATGQLGLARNLSAGEILEQVR 167

Query: 153 L-ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMG 209
             AR+      G ++           ++SNIV MGMGEPL N+  +  SL    A    G
Sbjct: 168 FSARAAATGALGGQET----------RLSNIVFMGMGEPLSNYRALLTSLRTITAPVPQG 217

Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
              S R + +ST G VP I R+  E I V LA+SLHA  ++LR+ L+P+NR Y +  L+D
Sbjct: 218 FGISARNLVVSTVGMVPGIRRLASEGIPVTLAVSLHAPDDELRDALIPMNRHYKVGQLLD 277

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCE 325
           A   Y   +  RR++ EY +++ +ND P  A  L   L       A +N IP NP PG  
Sbjct: 278 AAHEY-FETTGRRVSIEYALIRDMNDHPWRAQLLADELNKRGKTWAHVNPIPLNPTPGSI 336

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
           +  S  + +  F+  +++SG S+ +R  RG DI  ACGQL + SK   K 
Sbjct: 337 WTASLPRVMEEFTSILRQSGISTTLRDTRGSDIDGACGQLATASKNHKKT 386


>gi|306819217|ref|ZP_07452928.1| cfr family radical SAM enzyme [Mobiluncus mulieris ATCC 35239]
 gi|304647999|gb|EFM45313.1| cfr family radical SAM enzyme [Mobiluncus mulieris ATCC 35239]
          Length = 401

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 182/350 (52%), Gaps = 23/350 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI +  + R   D Q M+D++   R L  Q    + P+++   ++    + W  + 
Sbjct: 53  FRADQIARHYFGRFEADPQLMTDLNARDRELAAQ----LLPQLITPVVTKTADQDWTQKT 108

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
             R   G  E+E+V +    R TLCVSSQVGC + C FC TG   L RNL+A EIL QV 
Sbjct: 109 LWRLFDG-AEVESVLMRYPKRVTLCVSSQVGCGMGCPFCATGQLGLARNLSAGEILEQVR 167

Query: 153 L-ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMG 209
             AR+      G ++           ++SNIV MGMGEPL N+  +  SL    A    G
Sbjct: 168 FSARAAATGALGGQET----------RLSNIVFMGMGEPLSNYRALLTSLRTITAPVPQG 217

Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
              S R + +ST G VP I R+  E I V LA+SLHA  ++LR+ L+P+NR Y +  L+D
Sbjct: 218 FGISARNLVVSTVGMVPGILRLASEGIPVTLAVSLHAPDDELRDALIPMNRHYKVGQLLD 277

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCE 325
           A   Y   +  RR++ EY +++ +ND P  A  L   L       A +N IP NP PG  
Sbjct: 278 AAHEY-FETTGRRVSIEYALIRDMNDHPWRAQLLADELNKRGKTWAHVNPIPLNPTPGSI 336

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
           +  S  + +  F+  +++SG S+ +R  RG DI  ACGQL + SK   K 
Sbjct: 337 WTASLPRVMEEFTSILRQSGISTTLRDTRGSDIDGACGQLATASKNHKKT 386


>gi|262202048|ref|YP_003273256.1| radical SAM protein [Gordonia bronchialis DSM 43247]
 gi|262085395|gb|ACY21363.1| radical SAM enzyme, Cfr family [Gordonia bronchialis DSM 43247]
          Length = 368

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 195/364 (53%), Gaps = 45/364 (12%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-- 77
           A+ ++G+P    + R +Q+ +  Y R   D   M+D+    R  +    + ++P ++   
Sbjct: 31  AVAELGLP----KFRANQLARQYYARLNGDVAEMTDLPASARDSVG---AALFPPLLTPV 83

Query: 78  EKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
             ISCD   TRK L R     +     +E+V +    R TLC+SSQ GC + C FC TG 
Sbjct: 84  RHISCDDGSTRKTLWRLHDGTL-----LESVLMRYPDRNTLCISSQAGCGMACPFCATGQ 138

Query: 136 QKLVRNLTAEEILLQV-LLARSLL-GDF--PGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
             L RNL+  EI+ QV   ARSL  G+F  PG              ++SN+V MGMGEPL
Sbjct: 139 GGLDRNLSTAEIVDQVRCAARSLRDGEFGEPG--------------RLSNVVFMGMGEPL 184

Query: 192 CNFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
            N+      V++  S A D  GL  S R +T+ST G  P+I R+ +E + V LA+SLH  
Sbjct: 185 ANYTRVVSAVRQITSPAPD--GLGISARSVTVSTVGLAPSIRRLADEGLAVTLAVSLHTP 242

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++LR+ LVP+N ++ ++ ++DA R+Y   +  RR++ EY +++ +ND P  A  L K L
Sbjct: 243 DDELRDTLVPVNNRWSVQEVLDAARYYAD-TTGRRVSIEYALIRDVNDQPWRADMLGKKL 301

Query: 307 K---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
               G    +NLIP NP PG E+  S +     F   ++  G S  +R  RG +I AACG
Sbjct: 302 HKALGSRVHVNLIPLNPTPGSEWDASPKPVEREFVRRVREQGVSCTVRDTRGQEIAAACG 361

Query: 364 QLKS 367
           QL +
Sbjct: 362 QLAA 365


>gi|322435186|ref|YP_004217398.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX9]
 gi|321162913|gb|ADW68618.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX9]
          Length = 383

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/350 (35%), Positives = 186/350 (53%), Gaps = 37/350 (10%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  Q+   +Y + +   + ++ +   VR  L  + + +  PE+     S DGT ++L+R
Sbjct: 42  FRAKQLIDGLYKQRVGAVEEITTLPIAVRERLAAEGWVVGLPELAQTAKSVDGTERYLVR 101

Query: 92  FPARCIGGPVEIETVYIPEKS--------------RGTLCVSSQVGCSLTCSFCYTGTQK 137
                +     +ETV++P                 R T+CVSSQVGC++ C FC T    
Sbjct: 102 -----LADGETVETVWMPGGDGAELQEGDEGPGYKRATICVSSQVGCAVNCQFCLTAKLG 156

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
           + RNLTA EI  QV              + +G+VI   G+   N+V MGMGEP  N+D+ 
Sbjct: 157 MRRNLTAGEIAGQVT----------AVLNRQGIVI---GKDRINLVFMGMGEPFLNYDSF 203

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVP 256
             ++ +  + MG+  S  R+T+STSG  P I R   E I   LA+SL+A ++ +R  ++P
Sbjct: 204 MDAVRLLVNEMGIPAS--RMTVSTSGIEPAIRRFALEPIRPNLALSLNASNDVVRESIMP 261

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
           I RK+ +E L+DA +  P L     +TFEYV+L G+ND P  A  ++ +LKG+ AK+NLI
Sbjct: 262 ITRKWDIEALLDAVKSVP-LRRQEYVTFEYVLLGGVNDQPEHAREVLALLKGMQAKVNLI 320

Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            +NP PG  Y    Q+    F + +   G  +  R PRG DI AACGQLK
Sbjct: 321 VWNPGPGVAYEQPSQEAADAFHKMLVVGGVPAFTRRPRGRDIYAACGQLK 370


>gi|325474464|gb|EGC77651.1| ribosomal RNA large subunit methyltransferase N [Treponema
           denticola F0402]
          Length = 347

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 191/368 (51%), Gaps = 33/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L GM  EE++      G+ ++    R  QI+ WI   G+  F  M+++S ++R  L 
Sbjct: 7   KTALSGMFPEEIQSF---CGLKEK---FRAQQIFHWI-ASGVNSFDEMTNLSFDMRSKLK 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGC 124
             FS+   +I +     DGT    ++       G V IETV + +K+ R T CVS Q GC
Sbjct: 60  NDFSLFSTKIKEALKDKDGT----IKLAVELYDGSV-IETVLLTDKAKRKTACVSCQAGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC TG    +RNL+A EI+ Q L      G                   + NIV 
Sbjct: 115 PMKCAFCKTGQIGFLRNLSASEIVEQFLHLEREAGS------------------LDNIVF 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEP+ N   + K+++I +   G + SKRRIT+STSG    I  + ++   V LA+SL
Sbjct: 157 MGMGEPMLNLPEIDKAINILAHPKGRNLSKRRITISTSGLCNGIYEMADKGPEVRLAVSL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
                 LR+ L+PIN+   L+ L  A +++   SN +R+T E  ++KG+N   + A  +I
Sbjct: 217 TTADETLRSELMPINKTNSLDELKQAIKYFNSKSN-KRVTLELALMKGLNTDKKAAQEVI 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +  KG+   INLIP+NP  G  +    + ++ TF   +K++G +   R  RG  I  ACG
Sbjct: 276 EFAKGLECFINLIPWNPVEGLNFKTPSETEVRTFETYLKKAGLNISTRQKRGQSIGGACG 335

Query: 364 QLKSLSKR 371
           QL S + R
Sbjct: 336 QLGSTATR 343


>gi|322806773|emb|CBZ04342.1| ribosomal RNA large subunit methyltransferase N [Clostridium
           botulinum H04402 065]
          Length = 272

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/284 (39%), Positives = 162/284 (57%), Gaps = 24/284 (8%)

Query: 84  GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
            T K+L  +    I     IE+V +  K   ++CVS+QVGC + C FC +    ++RNLT
Sbjct: 6   NTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCRMGCKFCASTLDGVIRNLT 60

Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
           + EIL Q++ A+                   +G +ISN+V+MG GEPL NF+NV K L +
Sbjct: 61  SGEILSQIMAAQ-----------------KEIGERISNVVLMGSGEPLDNFENVTKFLDL 103

Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYP 262
            +    L+  +R ITLST G VP I  + ++   + LAISLH+  + LR  ++PI  KY 
Sbjct: 104 VTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLHSPEDLLRKEMMPIANKYS 163

Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322
           ++ L++AC +Y   +N RRITFEY ++KG NDS ++A  L  +LKG    +NLIP N   
Sbjct: 164 IKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKKLSIVLKGKLCHVNLIPVNEIK 222

Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
              Y  S  K+I +F   +K +G  + IR   G DI AACGQL+
Sbjct: 223 ENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQLR 266


>gi|254382049|ref|ZP_04997411.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194340956|gb|EDX21922.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 371

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 186/366 (50%), Gaps = 29/366 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  M   E  EA+  IG        R  Q+ +  + R   D    +DI    R  L Q  
Sbjct: 25  LADMTPAERREAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAASREKLQQE- 79

Query: 69  SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             + P++++    ISCD   TRK L +     +     +E+V +    R T+C+SSQ GC
Sbjct: 80  --LLPDLMNVLRHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGC 132

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++     L D           +P    ++SNIV 
Sbjct: 133 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 184 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 243

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y    + RRI+ EY +++ IND       
Sbjct: 244 SLHAPDDELRDTLVPVNTRWNVREVLDAAWEY-AEKSGRRISIEYALIRDINDQAWRGDL 302

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L K+LKG    +NLIP NP PG ++  S  +D   F E I R G    +R  RG +I  A
Sbjct: 303 LGKLLKGKRVHVNLIPLNPTPGSKWTASRPEDERAFVEAIARHGVPVTVRDTRGQEIDGA 362

Query: 362 CGQLKS 367
           CGQL +
Sbjct: 363 CGQLAA 368


>gi|330466309|ref|YP_004404052.1| ribosomal RNA large subunit methyltransferase N [Verrucosispora
           maris AB-18-032]
 gi|328809280|gb|AEB43452.1| ribosomal RNA large subunit methyltransferase N [Verrucosispora
           maris AB-18-032]
          Length = 383

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 184/342 (53%), Gaps = 25/342 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCD--GTRKW 88
            R  QI    + R +RD   M+D+    R  L      + P +++   +++CD   TRK 
Sbjct: 46  FRARQISTHYFGRLVRDPAQMTDLPAASRARLADQ---LLPRLLNPVRELACDDGATRKA 102

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R     +     +E+V +    R T+C+SSQ GC + C FC TG   L RNL+  EI+
Sbjct: 103 LWRLHDGAL-----VESVLMGYPDRVTVCISSQAGCGMACPFCATGQAGLTRNLSTAEIV 157

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASD 206
            Q +    +           G V+ S  R +S++V MGMGEPL N++ V  ++   +A  
Sbjct: 158 DQAVYLAGVAA--------SGAVVGSPAR-LSHVVFMGMGEPLANYNRVVAAIRRLVAPA 208

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             GL  S+R IT+ST G VP I R+  E++ V LA+SLHA  ++LR+ LVP+N+++ +  
Sbjct: 209 PEGLGLSQRHITVSTVGLVPAIHRLASEDLSVTLALSLHAPDDELRDELVPVNQRWKVSE 268

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           ++DA   Y      RR++ EY M+K +ND P  A  L ++L G  A +NLIP NP PG  
Sbjct: 269 VLDAAWAY-AARTGRRVSIEYAMIKDVNDQPWRADLLGRLLAGKLAHVNLIPLNPTPGSR 327

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +  S +     F   ++ +G S+ +R  RG +I  ACGQL +
Sbjct: 328 WDASPKPVEREFVRRLRDAGVSTTVRDTRGREIDGACGQLAA 369


>gi|320161065|ref|YP_004174289.1| hypothetical protein ANT_16630 [Anaerolinea thermophila UNI-1]
 gi|319994918|dbj|BAJ63689.1| hypothetical protein ANT_16630 [Anaerolinea thermophila UNI-1]
          Length = 357

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 187/355 (52%), Gaps = 26/355 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           E+L+  L+  G P      R  Q+W+ +Y       +  + + + +R+ L + FS  +  
Sbjct: 19  EDLQNILVAWGEPP----FRAKQVWEGLYHSFWNSPEEFTHLPKTLRNRLAEEFSFSHLS 74

Query: 75  IVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
            +    S DG T K L   P         IETV +  K R TLC+S+Q GC++ C FC T
Sbjct: 75  PIQTYASEDGETSKTLFHLPDN-----RSIETVLMRYKERRTLCISTQSGCAMGCVFCAT 129

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G     R+L++ EI+ QV+    LL                    ++N+V+MGMGEP  N
Sbjct: 130 GQMGFGRHLSSGEIVEQVIYFARLLR--------------KTNEVVTNVVVMGMGEPFHN 175

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
           ++N  K+++  +   G +   RR T+ST G VP I R  +E   + LAISLHA ++ LR+
Sbjct: 176 YENTLKAIARLNHPEGFNLGARRFTISTVGLVPMIERFAQENHQINLAISLHAANDTLRS 235

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            L+P+N+KYP+  L+ A R Y      RR+TFE+ +++ INDSP  A  L  +LKG+   
Sbjct: 236 SLLPVNKKYPISDLMRAVRQYVA-QTGRRVTFEWALIRDINDSPEHARELASLLKGLLCH 294

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +N+IP NP        + ++    F   ++++G  + IR  RG+DI A CGQL +
Sbjct: 295 VNVIPLNPTQKYHGKATTRERAEAFCSILQKAGIPATIRLRRGIDIQAGCGQLAT 349


>gi|183981843|ref|YP_001850134.1| hypothetical protein MMAR_1830 [Mycobacterium marinum M]
 gi|205829814|sp|B2HJP3|RLMN_MYCMM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|183175169|gb|ACC40279.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 364

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 188/358 (52%), Gaps = 36/358 (10%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-- 77
           A+  +G+P      R  Q+    Y R I D + M+D+   VR    Q    ++P ++   
Sbjct: 30  AVAALGLPP----FRAKQLAHQYYGRLIADPRQMTDLPAAVRE---QIAETMFPNLLTAA 82

Query: 78  EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
            +++CD   TRK L R       G V +E+V +    R T+C+SSQ GC + C FC TG 
Sbjct: 83  REVTCDAGQTRKTLWR----ATDG-VTLESVLMRYPQRNTVCISSQAGCGMACPFCATGQ 137

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             L RNL+  EIL QV  A + L D               G ++SN+V MGMGEPL N+ 
Sbjct: 138 GGLTRNLSTAEILEQVRAAAAALRD-------------EFGDRLSNVVFMGMGEPLANYA 184

Query: 196 NVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            V  ++   ++   MG   S R +T+ST G  P I ++ +E +GV LA+SLHA  ++LR+
Sbjct: 185 RVLAAVRRITEPPPMGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSLHAPDDELRD 244

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GI 309
            LVP+N ++ +   ++A  HY      RR++ EY +++ +ND P  A  L K L    G 
Sbjct: 245 TLVPVNNRWKISEALEAA-HYYAEVTGRRVSVEYALIREVNDQPWRADLLGKRLHRALGP 303

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
              +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I AACGQL +
Sbjct: 304 LVHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAQGVSCTVRDTRGREISAACGQLAA 361


>gi|33865151|ref|NP_896710.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
           WH 8102]
 gi|81575037|sp|Q7U8K0|RLMN_SYNPX RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33638835|emb|CAE07132.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 344

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 181/366 (49%), Gaps = 37/366 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
           L+G    ELE       + Q     R  Q+  W+Y +G R    ++ + +  R  L +  
Sbjct: 2   LLGRSAAELE----SWAVAQGQKPFRGRQLHDWLYAKGARSLSEITVLPKAWRESLKEDG 57

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             +   + V   ++ D T K LL            IETV IP   R T+CVSSQVGC + 
Sbjct: 58  VEVGRLKEVHRSVAADATTKLLL-----STDDGETIETVGIPTDQRLTVCVSSQVGCPMA 112

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG   L R+L   EI+ QVL  R ++                  R+ S+IV MGM
Sbjct: 113 CRFCATGKGGLQRSLRTHEIVDQVLSVREVMD-----------------RRPSHIVFMGM 155

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240
           GEPL N   V  ++   +D +G+   +RRIT+ST G    + ++ E            LA
Sbjct: 156 GEPLLNSQAVLDAIRCLNDDLGIG--QRRITVSTVGVPKTLPQLAELALATLGRAQFTLA 213

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +  LR  L+P    YP E L++ CRHY  ++  RR++FEY++L G+ND+P  A 
Sbjct: 214 VSLHAPNQALREELIPTAHAYPYEALLEDCRHYLAVTG-RRVSFEYILLGGLNDAPEHAA 272

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L   + G  + +NLI +NP    E+    +  I  F   ++R G +  +R  RGLD  A
Sbjct: 273 ELADRVGGFQSHVNLIAYNPIEEEEFQRPTRARIEGFQRVLERRGVAVSLRASRGLDQNA 332

Query: 361 ACGQLK 366
           ACGQL+
Sbjct: 333 ACGQLR 338


>gi|300776949|ref|ZP_07086807.1| cfr family radical SAM enzyme [Chryseobacterium gleum ATCC 35910]
 gi|300502459|gb|EFK33599.1| cfr family radical SAM enzyme [Chryseobacterium gleum ATCC 35910]
          Length = 344

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 191/336 (56%), Gaps = 24/336 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-KISCDGTRKWLLR 91
            R  Q++ W++ + +     M+++S+ +R  +++ ++I  P  VD  + S DGT K  ++
Sbjct: 24  FRAKQVYDWLWSKNLHSIDEMTNLSKSLREKISEEYTI-NPVSVDLLQKSSDGTIKNGVK 82

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +   + +E+V IP ++R T CVSSQVGCSL C FC T   K +RNL   EI+ QV
Sbjct: 83  -----LHDGLMVESVLIPTETRTTACVSSQVGCSLNCEFCATARLKRMRNLEVAEIVDQV 137

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            L             I+        R +SNIV MGMGEP+ N+ NV +++   +   GL 
Sbjct: 138 AL-------------IDSQSRMYFDRPLSNIVFMGMGEPMMNYKNVVEAIKKITQPEGLG 184

Query: 212 FSKRRITLSTSGFVPNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
            S RRIT+STSG +P + ++   +E+ V LA+SLH+     RN ++P + K+PL  +++A
Sbjct: 185 MSPRRITVSTSG-IPKMIKMLADDELRVKLALSLHSAIESKRNEIMPFSDKFPLTDIMEA 243

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            +++   + +  ITFEY + KGIND   D   LIK  K +P+K+NLI +NP    +Y   
Sbjct: 244 LQYWYQKTGSV-ITFEYCVWKGINDGDEDIKALIKYCKQVPSKVNLIQYNPIGDGKYDQC 302

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +++    +   ++ +G +  +R  RG DI AACGQL
Sbjct: 303 NKQAEENYIRQLENAGITVMVRRSRGGDIDAACGQL 338


>gi|161528893|ref|YP_001582719.1| radical SAM protein [Nitrosopumilus maritimus SCM1]
 gi|205829829|sp|A9A3L9|RLMN_NITMS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|160340194|gb|ABX13281.1| radical SAM enzyme, Cfr family [Nitrosopumilus maritimus SCM1]
          Length = 351

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 197/368 (53%), Gaps = 31/368 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L  ++ EE+E+ ++ +G    + R R  QI   +Y +  +D   +  + +++R    + 
Sbjct: 3   DLYRLLPEEMEKLVIDMG----YDRYRADQILLPLYYKFPKDINDIPQLPKKLREEFTEA 58

Query: 68  -FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEI-----ETVYIPEKSRGTLCVSS 120
            ++I   + +   +S DG T K LL       G  VE      E   I    R T+CVS+
Sbjct: 59  GYTIGSAKEIHRVVSDDGDTTKLLLELSD---GSSVETVLMQYEPTKIGGHPRSTICVST 115

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q+GC++ C FC TG      NL AE I+ QV+    LL                 G  ++
Sbjct: 116 QIGCAMGCVFCATGQMGFETNLKAEHIVSQVIHFAELL--------------EQRGEHVT 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           N+V MGMGEP+ N+D + +++ I +   G    +R IT+ST G    I ++ EE + + L
Sbjct: 162 NLVFMGMGEPMANYDEMIRAVKILTHDRGFGLGQRHITISTIGITSGIEKLAEENLQIGL 221

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           AISLHA +N+LR  LVP      +E +I + R Y      RR+TFEY +++G+NDSP  A
Sbjct: 222 AISLHAPNNELRKKLVPTAGPNSVEDIIKSGRDYFK-KTGRRVTFEYALMEGVNDSPEIA 280

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++L+G  + +N+IP NP  G ++    +K+++ F + +++SG +  +R  +G +I 
Sbjct: 281 HELARLLRGNGSHVNIIPINPTAG-DFKRPSEKNVLEFEQILRKSGVNCTVRVEKGTEIS 339

Query: 360 AACGQLKS 367
           AACGQL++
Sbjct: 340 AACGQLRT 347


>gi|222529035|ref|YP_002572917.1| ribosomal RNA large subunit methyltransferase N
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455882|gb|ACM60144.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor bescii DSM
           6725]
          Length = 341

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/354 (36%), Positives = 191/354 (53%), Gaps = 31/354 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +EL++ L  IG        RTSQI++W+Y +   D    +++  E+R  +   F I   +
Sbjct: 11  DELKKWLENIG----EKPFRTSQIFEWLYKKNATDVMQFTNLPLELREKIEDEFLINSLQ 66

Query: 75  IVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           I+  K   DG   K+L      C    VE  +V++P +    +CVS+QVGC + C FC +
Sbjct: 67  IL--KHQSDGESIKFLFEL---CDKNGVE--SVFLPYRYGNAICVSTQVGCKMNCRFCAS 119

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
                VRNL+A E++ Q++             ++E       G++I+N+V+MG GEP  N
Sbjct: 120 AIGGFVRNLSAGEMVDQII-------------NVENFT----GKRITNVVLMGSGEPFDN 162

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252
            +NV K + I +   G +   R IT+ST G V  I R+ +    V LAISLHA +N LR+
Sbjct: 163 IENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISLHAPNNSLRD 222

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            LVPIN+KYP+E ++ A  +Y   +N RR+TFEY ++ G+NDS   A  L K+LKG    
Sbjct: 223 KLVPINKKYPVEDIMKAVDYYIKRTN-RRVTFEYALIDGVNDSIECAQELGKMLKGKLVH 281

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +NLIP NP     +    ++ I  F E +K    +  IR   G  I AACGQL+
Sbjct: 282 VNLIPVNPVEEKGFRRPSKEKIKVFFETLKSYQINVTIRRELGSSISAACGQLR 335


>gi|221195097|ref|ZP_03568153.1| radical SAM enzyme, Cfr family [Atopobium rimae ATCC 49626]
 gi|221185000|gb|EEE17391.1| radical SAM enzyme, Cfr family [Atopobium rimae ATCC 49626]
          Length = 361

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/361 (34%), Positives = 181/361 (50%), Gaps = 28/361 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L  +   E+ E +  +G P    + R  Q+  W++ +G   F  MS++ + +R  L 
Sbjct: 21  KRGLKTLSHAEIVELVENLGQP----KFRAKQLEDWMWSKGATSFDQMSNLPKSLRAGLA 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  S      V  ++S DG+RK+LL++P       V +E V +P  ++  +C S+Q GC+
Sbjct: 77  KTVSFQSITQVTRQLSQDGSRKYLLQYPDN-----VCVECVGMPTGNKLAVCASTQAGCA 131

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TG   L R+L+A EI  QVL  R+   DF                ++S++V M
Sbjct: 132 MGCAFCATGAAGLTRSLSASEIYDQVLHIRN---DFE--------------MRVSSVVFM 174

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           G GEP  N+DN  ++L + +   GL    R +T+ST G +P I R   E     LA+SLH
Sbjct: 175 GQGEPFMNYDNALEALRLLNSPHGLGIGARHLTISTCGVIPMIKRFANEPEQFTLAVSLH 234

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +     R+IL+P  RKY L  L D    Y      RR T+EY ++ GINDS  +   L  
Sbjct: 235 SAVQKTRDILMPGVRKYSLLHLYDIMGEYVE-KTGRRPTYEYALIGGINDSENELGALRD 293

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             +G  A +NLI  N  PG ++  S       F   +   G  + IR  RG DI AACGQ
Sbjct: 294 FCRGTLAHVNLIQLNEIPGSKFHPSTPARAQQFVTKLGEVGVEATIRISRGADIDAACGQ 353

Query: 365 L 365
           L
Sbjct: 354 L 354


>gi|297571184|ref|YP_003696958.1| radical SAM enzyme, Cfr family [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931531|gb|ADH92339.1| radical SAM enzyme, Cfr family [Arcanobacterium haemolyticum DSM
           20595]
          Length = 426

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 186/367 (50%), Gaps = 25/367 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + +  + R E    +  +G PQ     R  QI K  +     D + M+D+    R  + Q
Sbjct: 31  KHMADLTRAERRALVADLGYPQ----FRADQISKHYFEHDCADPEKMTDLPAAQRKEITQ 86

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              ++ P+++ +       +   ++   +   G V +E+V +    R TLC+SSQ GC +
Sbjct: 87  ---VLLPQLMTKVKDQVADKGATIKTLWKLFDGAV-VESVLMKYPQRATLCISSQAGCGM 142

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L RNL+  EI+ Q+  AR L         I G  +     +++N+V MG
Sbjct: 143 ACPFCATGQAGLTRNLSTAEIIEQLRYAREL-----AASGIFGEPV-----RVTNVVFMG 192

Query: 187 MGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGEPL NF  V+ +L   I     G   S R IT+ST G VP I ++ +E + V LA+SL
Sbjct: 193 MGEPLANFPAVRGALRRMIEPAPEGFGMSARNITVSTVGMVPVINKLADEGLPVTLAVSL 252

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  + LR+ L+PIN +Y +  L+DA RHY  +   RR++ EY ++K +ND    A  L 
Sbjct: 253 HAPDDALRDDLIPINSRYKVGELLDAARHY-FVRTGRRVSIEYALIKDMNDHEWRAELLA 311

Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
             L       A +N IP NP PG  + CS  +   TF   +  +G S+ IR  RG DI  
Sbjct: 312 AELNSRGHGWAHVNPIPLNPTPGSIWTCSTPETTRTFVRTLSDAGISTTIRDTRGSDIDG 371

Query: 361 ACGQLKS 367
           ACGQL +
Sbjct: 372 ACGQLAA 378


>gi|296171525|ref|ZP_06852789.1| cfr family radical SAM enzyme [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894087|gb|EFG73848.1| cfr family radical SAM enzyme [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 367

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 184/345 (53%), Gaps = 29/345 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE--KISCDG--TRKW 88
            R  Q+    Y R I D + M+D+   VR  + +    ++P ++     ++CD   TRK 
Sbjct: 39  FRAKQLAHQYYGRLIADPRAMTDLPAAVRERVAE---AMFPRLLTAAADVACDAGQTRKT 95

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R       G    E+V +    R T+C+SSQ GC + C FC TG   L RNL+  EI+
Sbjct: 96  LWR----GTDG-TTFESVLMRYPQRNTVCISSQAGCGMACPFCATGQGGLTRNLSTAEIV 150

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-- 206
            QV  A + L D  G            G+++SN+V MGMGEPL N+  V  ++   ++  
Sbjct: 151 EQVRSAAAALRDDFG----------PPGQRLSNVVFMGMGEPLANYARVVAAVRRITEPP 200

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             G   S R +T+ST G  P I ++ +E +GV LA+SLHA  ++LR+ LVP+N ++ ++ 
Sbjct: 201 PHGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSLHAPDDELRDTLVPVNNRWKIDE 260

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWP 322
            +DA R+Y  ++  RR++ EY +++ +ND P  A  L K L    G    +NLIP NP P
Sbjct: 261 ALDAARYYADVTG-RRVSVEYALIRDVNDQPWRADLLGKRLHRALGPLVHVNLIPLNPTP 319

Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G E+  S +     F   ++  G S  +R  RG +I AACGQL +
Sbjct: 320 GSEWDASPKAAEREFVRRVRAQGVSCTVRDTRGREISAACGQLAA 364


>gi|302537211|ref|ZP_07289553.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           C]
 gi|302446106|gb|EFL17922.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           C]
          Length = 371

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 185/366 (50%), Gaps = 29/366 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +   E  EA+  IG        R  Q+ +  + R   D    +DI    R  L Q  
Sbjct: 25  LADLTPAERREAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAASREKLQQE- 79

Query: 69  SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             + PE+++    ISCD   TRK L +     +     +E+V +    R T+C+SSQ GC
Sbjct: 80  --LLPELMNVVRHISCDNDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGC 132

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++     L D           +P    ++SNIV 
Sbjct: 133 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 184 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 243

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y    + RRI+ EY +++ IND       
Sbjct: 244 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRISIEYALIRDINDQAWRGDL 302

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F E I R G    +R  RG +I  A
Sbjct: 303 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIARHGVPVTVRDTRGQEIDGA 362

Query: 362 CGQLKS 367
           CGQL +
Sbjct: 363 CGQLAA 368


>gi|120403214|ref|YP_953043.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           vanbaalenii PYR-1]
 gi|205829819|sp|A1T787|RLMN_MYCVP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|119956032|gb|ABM13037.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 365

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 187/358 (52%), Gaps = 36/358 (10%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VD 77
           A+ ++G+P      R  Q+    Y R I D   M+D+   VR  +      ++P +    
Sbjct: 32  AVAELGLPA----FRAKQLANQYYGRLIADPTQMTDLPAAVRERVAD---ALFPTLFGAA 84

Query: 78  EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
            +I CD   TRK L R     + G    E+V +    R T+C+SSQ GC + C FC TG 
Sbjct: 85  REIECDSGETRKVLWR----AVDG-TTFESVLMRYPDRNTVCISSQAGCGMACPFCATGQ 139

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             L RNL+  EIL QV  A + L D  G              ++SN+V MGMGEPL N++
Sbjct: 140 GGLKRNLSTAEILEQVRAASAELRDRDGG-------------RLSNVVFMGMGEPLANYN 186

Query: 196 NVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            V  ++    AS   G   S R +T+ST G  P I ++ +E + V LA+SLH   ++LR+
Sbjct: 187 RVVAAVRRITASSPNGFGISARSVTVSTVGLAPAIRKLADEKLNVTLALSLHTPDDELRD 246

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311
            LVP+N ++ ++ ++DA R+Y  ++  RR++ EY +++ +ND P  A  L K L G    
Sbjct: 247 TLVPVNNRWKVDEVLDAARYYADVT-GRRVSIEYALIRDVNDQPWRADLLGKKLHGELGP 305

Query: 312 --KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
              +NLIP NP PG E+  S +     F   ++  G S  +R  RG +I AACGQL +
Sbjct: 306 LVHVNLIPLNPTPGSEWDASPKPVEREFVRRVRAKGVSCTVRDTRGREIAAACGQLAA 363


>gi|124022151|ref|YP_001016458.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
           marinus str. MIT 9303]
 gi|205829805|sp|A2C6T3|RLMN_PROM3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123962437|gb|ABM77193.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
           MIT 9303]
          Length = 356

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 195/369 (52%), Gaps = 37/369 (10%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
            ++L+G    ELE   +  G P      R  Q+  W+Y +G R F  ++ + +  R  L 
Sbjct: 10  NQALLGCSATELESWAVAEGQPA----FRGRQLHDWLYAKGARSFDAITVLPKSWRISLQ 65

Query: 66  QH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           Q   +I     V+  ++ D T K LL      + G   IE+V IP + R T+C+SSQVGC
Sbjct: 66  QRGLTIGRLLEVNRAVAVDDTTKLLLA----TVDGET-IESVGIPTQQRLTVCLSSQVGC 120

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +G   L R+L   EI+ QVL  R                  ++ R+ S++V 
Sbjct: 121 PMACRFCASGKGGLQRSLATHEIVDQVLSLRE-----------------AMDRRPSHVVF 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---V 237
           MGMGEPL N + V  S+   +  +G++  +RRIT+ST G    +P +A +  + +G    
Sbjct: 164 MGMGEPLLNIEAVLASIRCLNIDLGIA--QRRITVSTVGVPHTLPQLAELAMKRLGRAQF 221

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA + +LR  L+P    YP E L+  CRHY  ++  RR+TFEY++L  +ND P+
Sbjct: 222 TLAVSLHAPNQELRERLIPTACAYPFETLLQDCRHYLAVTG-RRVTFEYILLGALNDQPQ 280

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L + ++G  + +NLI +NP     +   + + I  F   +++ G +  +R  RGLD
Sbjct: 281 HAEELAERVRGFQSHVNLIAYNPIDDEGFQRPNPETIEAFRRVLEQRGVAVSLRASRGLD 340

Query: 358 ILAACGQLK 366
             AACGQL+
Sbjct: 341 QNAACGQLR 349


>gi|329936699|ref|ZP_08286406.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
           griseoaurantiacus M045]
 gi|329303929|gb|EGG47812.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
           griseoaurantiacus M045]
          Length = 370

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/362 (35%), Positives = 184/362 (50%), Gaps = 29/362 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E +EA+  IG        R  Q+ +  + R   D Q  +DI    R  L +    + PE+
Sbjct: 31  ERKEAVSAIG----EKPFRAKQLSQHYFARYSHDPQEWTDIPAASRGRLRE---ALLPEL 83

Query: 76  VDE----KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
           +          D TRK L R       G + +E+V +    R T+C+SSQ GC + C FC
Sbjct: 84  MTVVRHLSTDADTTRKTLWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFC 138

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   L RNL+  EI+ Q++          G   +    IP    ++SNIV MGMGEPL
Sbjct: 139 ATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEIPGGPARLSNIVFMGMGEPL 189

Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
            N++ V  ++   +D    GL  S+R IT+ST G VP I R  +E     LAISLHA  +
Sbjct: 190 ANYNRVVAAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFTDEGFKCRLAISLHAPDD 249

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           +LR+ LVP+N ++ +  ++DA   Y   S  RR++ EY +++ IND       L ++LKG
Sbjct: 250 ELRDTLVPVNTRWKVREVLDAGFEYAARSG-RRLSIEYALIRDINDQAWRGDRLGRLLKG 308

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
            P  +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  ACGQL + 
Sbjct: 309 RPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGACGQLAAT 368

Query: 369 SK 370
            +
Sbjct: 369 ER 370


>gi|256827808|ref|YP_003151767.1| radical SAM enzyme, Cfr family [Cryptobacterium curtum DSM 15641]
 gi|256583951|gb|ACU95085.1| radical SAM enzyme, Cfr family [Cryptobacterium curtum DSM 15641]
          Length = 351

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 183/362 (50%), Gaps = 38/362 (10%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           E L  +L + G+P      R  QI +W+Y RG   +  M+D+   +R  L        P 
Sbjct: 11  ERLTSSLTEQGLPA----FRARQIIRWVYERGTLSYGEMTDLPLSLRKSLAHQMPFAPPR 66

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG--------TLCVSSQVGCSL 126
           I+D +IS DG RK++L F         E+ETV IP +++         T+C S+QVGC +
Sbjct: 67  IIDRQISRDGARKYVLAFSDN-----AEVETVAIPSRTKTAEGTPEHLTVCFSTQVGCPM 121

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC TGT+ L R+L   E++ Q+L                  V   +  ++S+ V MG
Sbjct: 122 ACSFCATGTEGLTRSLLPGEMVQQLL-----------------TVQRDMNMRVSHAVAMG 164

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
            GEP  N+DN+  +L I ++ +G+    R IT+ST G +  I           LA+SLH+
Sbjct: 165 QGEPFLNYDNLVAALEIINEPLGIG--ARHITVSTCGILAGIDHFAHLSQQYTLALSLHS 222

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              + RN L+P     PL  L  A + Y  +S  RR + EY+M+ G+ND   D   L   
Sbjct: 223 AIQEKRNQLMPRCSTVPLPRLKQALKEYARVS-GRRPSVEYLMIGGVNDGTTDLEALSSF 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             G+   INL+P N      +  S QK + T+ + +++ G+ + IR+ RG DI  ACGQL
Sbjct: 282 CSGLFVHINLLPMNNIEESPFRPSPQKTMKTWKQVLEQRGWETTIRSSRGSDIDGACGQL 341

Query: 366 KS 367
           K+
Sbjct: 342 KN 343


>gi|33863770|ref|NP_895330.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
           marinus str. MIT 9313]
 gi|81577096|sp|Q7V5P5|RLMN_PROMM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33635353|emb|CAE21678.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 356

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 197/369 (53%), Gaps = 37/369 (10%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
            ++L+G    ELE   +  G P      R  Q+ +W+Y +G R F+ ++ + +  R  L 
Sbjct: 10  NQALLGCSATELEGWAVAEGQPA----FRGRQLHEWLYAKGARSFEAITVLPKSWRLSLQ 65

Query: 66  QHFSIIYPEI-VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           Q    I   + V+  ++ D T K LL      + G   IE+V IP + R T+C+SSQVGC
Sbjct: 66  QRGITIGRLLEVNRAVAVDDTTKLLLA----TVDGET-IESVGIPTQQRLTVCLSSQVGC 120

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +G   L R+L   EI+ QVL  R                  ++ R+ S++V 
Sbjct: 121 PMACRFCASGKGGLQRSLATHEIVDQVLSLRE-----------------AMDRRPSHVVF 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---V 237
           MGMGEPL N + V  ++   +  +G++  +RRIT+ST G    +P++A +  + +G    
Sbjct: 164 MGMGEPLLNIEAVLAAIRCLNIDLGIA--QRRITVSTVGVPHTLPHLAELAMKRLGRAQF 221

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA + +LR  L+P    YP E L+  CRHY  ++  RR+TFEY++L  +ND P+
Sbjct: 222 TLAVSLHAPNQELRERLIPTACAYPFETLLQDCRHYLAVTG-RRVTFEYILLGALNDQPQ 280

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L   ++G  + +NLI +NP     +   + + I  F   +++ G +  +R  RGLD
Sbjct: 281 HAEELADRVRGFQSHVNLIAYNPIDDEGFQRPNPETIEAFRRVLEQRGVAVSLRASRGLD 340

Query: 358 ILAACGQLK 366
             AACGQL+
Sbjct: 341 QNAACGQLR 349


>gi|224003697|ref|XP_002291520.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973296|gb|EED91627.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 343

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 125/345 (36%), Positives = 189/345 (54%), Gaps = 33/345 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI  WI+ +G+     MSD+  ++R +L +  ++    +  E++S DGTRK   + 
Sbjct: 21  FRARQIHNWIFSQGVTSIDDMSDLPLKLRTMLKERATVGSLHLEVEQVSQDGTRKRAYKL 80

Query: 93  PARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
               +     IE+V +P E  R T CVSSQ GC++ C FC TG     R LT++EI  QV
Sbjct: 81  HDGQM-----IESVLMPYEDGRRTACVSSQAGCAMGCVFCATGQMGFARQLTSDEIFEQV 135

Query: 152 -LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
              A  L G+               G ++SN+VMMGMGEPL N+ NV  ++   +  +G+
Sbjct: 136 ATFANELKGE---------------GERLSNVVMMGMGEPLANYRNVLAAMHRMNTDLGI 180

Query: 211 SFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKY-PLEMLID 268
               R+IT+ST G VPNI + + E++ V LA+SLH  +++ R  L+P NR+Y  L+ L+ 
Sbjct: 181 --GARKITISTVGVVPNIKKLIEEDLQVRLALSLHCATDEERTALLPANRRYGGLDELMT 238

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPWPG 323
             R Y  +    R+TFE+ +++G NDS   A  L ++L+        A +NLIP NP  G
Sbjct: 239 TIREYIRVKKM-RVTFEWALIEGQNDSKDVARTLGRLLQKHDIRPDMAHVNLIPLNPTGG 297

Query: 324 CEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAACGQLKS 367
                S + ++  F E +++  G S+  R  RG+DI A CGQLK+
Sbjct: 298 YGGGPSGRNNVHRFVEVLEKEFGISATPRMRRGIDIDAGCGQLKA 342


>gi|258645365|ref|ZP_05732834.1| radical SAM enzyme, Cfr family [Dialister invisus DSM 15470]
 gi|260402714|gb|EEW96261.1| radical SAM enzyme, Cfr family [Dialister invisus DSM 15470]
          Length = 345

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 194/362 (53%), Gaps = 27/362 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K ++ G+  +ELE  ++  G P    R R  Q+  ++Y R I  F  M+  SQ++R  L 
Sbjct: 2   KRNIWGLNLQELETWVVGNGFP----RFRAKQLRDYLYKRHIFHFDEMTQFSQKMRDWLK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++  I  P I+    S D   K +        G  VE  TV +      ++CVS+QVGC+
Sbjct: 58  ENGQIDKPVIISRAQSDD--EKTIKLLLKLKDGSLVE--TVCMCHHYGNSICVSTQVGCA 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +  + L RNLTA EIL Q+   + L  D P                  +IV+M
Sbjct: 114 MGCIFCASTRKGLERNLTAGEILAQMYAFKELY-DIP----------------FHSIVLM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N+  V   + +A+D   L+ S R IT+ST G VP I R+ +E I + LAISLH
Sbjct: 157 GAGEPLTNYKEVLHFIHLANDPELLNISYRNITISTCGIVPQIYRLADENIPITLAISLH 216

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ +RN+LVPI++ + ++ ++ A  +Y      RR+TFEY+++K +N S  +A  L +
Sbjct: 217 APNDRIRNVLVPISKNFRIKDVVSAAEYYFK-KTKRRVTFEYILIKDMNASVENAKELCR 275

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++  +P  INLIP N     +    + K+I  F + + + G  + +R   G +I AACGQ
Sbjct: 276 LIGKMPCHINLIPINSTEHIKLYPPEWKEIKRFQDILLKKGKETTVRKQMGDEIQAACGQ 335

Query: 365 LK 366
           LK
Sbjct: 336 LK 337


>gi|297202671|ref|ZP_06920068.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           sviceus ATCC 29083]
 gi|197713246|gb|EDY57280.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           sviceus ATCC 29083]
          Length = 368

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 125/345 (36%), Positives = 178/345 (51%), Gaps = 25/345 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VDEKISCD--GTRKW 88
            R  Q+ +  + R   D    +DI    R  L +    + PE+  V   +S D   TRK 
Sbjct: 42  FRAKQLSQHYFARYAHDPAEWTDIPAGARGKLQE---ALLPELMTVVRHLSTDQGTTRKT 98

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R     +     +E+V +    R T+C+SSQ GC + C FC TG   L RNL+  EI+
Sbjct: 99  LWRLFDGTL-----VESVLMRYPDRVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIV 153

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q++     L D           +P    ++SNIV MGMGEPL N+  V +S+   +D  
Sbjct: 154 HQIVDGMRALRDGE---------VPGGPARLSNIVFMGMGEPLANYKRVTQSIRALTDPA 204

Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             GL  S+R IT+ST G VP I R  +E     LAISLHA  ++LR+ LVP+N ++ +  
Sbjct: 205 PDGLGLSQRGITVSTVGLVPAIHRFSDEGFKCRLAISLHAPDDELRDTLVPVNTRWKVRE 264

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           ++DA   Y   S  RR++ EY +++ IND       L ++LKG P  +NLIP NP PG +
Sbjct: 265 VLDAGFEYVEKSG-RRLSIEYALIRDINDQAWRGDRLGRLLKGKPVHVNLIPLNPTPGSK 323

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           +  S  +D   F E I   G +  IR  RG +I  ACGQL +  +
Sbjct: 324 WTASRPEDEKAFVEAIAAHGVAVTIRDTRGQEIDGACGQLAATER 368


>gi|42527577|ref|NP_972675.1| radical SAM protein [Treponema denticola ATCC 35405]
 gi|81570188|sp|Q73KZ3|RLMN_TREDE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|41818162|gb|AAS12586.1| radical SAM enzyme, Cfr family [Treponema denticola ATCC 35405]
          Length = 347

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 190/368 (51%), Gaps = 33/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L GM  EE++      G+ ++    R  QI+ WI   G+  F  M+++S ++R  L 
Sbjct: 7   KTALSGMFPEEIQSF---CGLKEK---FRAQQIFHWI-ASGVNSFDEMTNLSFDMRSKLK 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGC 124
             FS+   +I +     DGT    ++       G V IETV + +K+ R T CVS Q GC
Sbjct: 60  NDFSLFSTKIKEALKDKDGT----IKLAVELYDGSV-IETVLLTDKAKRKTACVSCQAGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC TG    +RNL+A EI+ Q L      G                   + NIV 
Sbjct: 115 PMKCAFCKTGQIGFLRNLSASEIVEQFLHLEREAGS------------------LDNIVF 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEP+ N   + K+++I +   G + SKRRIT+STSG    I  + ++   V LA+SL
Sbjct: 157 MGMGEPMLNLPEIDKAINILAHPKGRNLSKRRITISTSGLCKGIYEMADKGPEVRLAVSL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
                 LR+ L+PI +   L+ L  A +++   SN +R+T E  ++KG+N   + A  +I
Sbjct: 217 TTADETLRSELMPITKTNSLDELKQAIKYFNSKSN-KRVTLELALMKGLNTDKKAAQEVI 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +  KG+   INLIP+NP  G  +    + ++ TF   +K++G +   R  RG  I  ACG
Sbjct: 276 EFAKGLECFINLIPWNPVEGLNFKTPSETEVRTFETYLKKAGLNISTRQKRGQSIGGACG 335

Query: 364 QLKSLSKR 371
           QL S + R
Sbjct: 336 QLGSTAAR 343


>gi|289450590|ref|YP_003475435.1| 23S rRNA m2A2503 methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185137|gb|ADC91562.1| 23S rRNA m2A2503 methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 345

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 183/341 (53%), Gaps = 40/341 (11%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE---KISCDGTRKWLL 90
           R  Q+  W+  RGI     ++DIS+ +R  L   F+  +  +V E   K   D T K++ 
Sbjct: 28  RVKQVEAWL-ARGINSPDDLTDISKSLREKLASEFN--FAGLVAERNIKSQLDATEKFVF 84

Query: 91  RFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
           R    +C+      E+V++  ++  ++C+S+Q GC + C+FC +      RNLTA E+  
Sbjct: 85  RLADGQCV------ESVFMQYRTGNSVCLSTQAGCRMGCTFCASTGIGFGRNLTAGELTA 138

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGR----KISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           QV L                     +GR    +IS++V+MG+GEPL N++ V K +   +
Sbjct: 139 QVAL---------------------IGRHRAERISHVVLMGIGEPLENYEEVVKFIRTVN 177

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264
           +  GL+ S R ITLST G V  I ++  E + + LAISLHA ++ LR+ L+PI ++YPL 
Sbjct: 178 NPQGLNISMRHITLSTCGLVDEIKKLAHENLPINLAISLHAPNDVLRSQLMPIAKRYPLA 237

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
            LI A  +Y      RRITFEY +   +ND  ++A  L K+L G+   +NLIP N +PG 
Sbjct: 238 QLIPAASYYAK-QTGRRITFEYALFADVNDRLQEAAELSKLLHGLLCHVNLIPANEFPGS 296

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            Y  S +     F + +   G ++ +R   G DI AACGQL
Sbjct: 297 LYHRSSKTSTKNFLDYLTAHGITATVRRELGSDIAAACGQL 337


>gi|78213579|ref|YP_382358.1| hypothetical protein Syncc9605_2063 [Synechococcus sp. CC9605]
 gi|123729671|sp|Q3AHX9|RLMN_SYNSC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78198038|gb|ABB35803.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 351

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 190/378 (50%), Gaps = 38/378 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLN 65
           ++L+G    EL++      + Q     R  Q+  WIY +G R    ++   +  R  L+ 
Sbjct: 3   QALLGRSAAELQD----WAVAQGQKPFRGRQLHDWIYAKGARSLADITVFPKTWRAALVE 58

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +   + V   ++ D T K LL            IETV IP   R T+CVSSQVGC 
Sbjct: 59  AGVDVGRLKEVHHSVATDATTKLLL-----STEDGETIETVGIPTDQRLTVCVSSQVGCP 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L R+L   EI+ QVL  R                  ++ R+ S+IV M
Sbjct: 114 MACRFCATGKGGLQRSLQTHEIVDQVLSVRE-----------------AMDRRPSHIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---VM 238
           GMGEPL N   V +++   +D +G+   +RRIT+ST G    +P +A +  + +G     
Sbjct: 157 GMGEPLLNSSAVLEAIRCLNDDLGIG--QRRITVSTVGVPKTLPQLAELAMQRLGRAQFT 214

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA +  LR  L+P    YP + L++ CRHY  ++  RR++FEY++L G+ND P  
Sbjct: 215 LAVSLHAPNQRLREELIPTAHAYPYDALLEDCRHYLDVTG-RRVSFEYILLGGLNDQPEH 273

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L   + G  + +NLI +NP    E+     + I  F   ++R G +  +R  RGLD 
Sbjct: 274 AAELADRVGGFQSHVNLIAYNPIEEEEFKRPTPQRIEAFRRVLERRGVAVSLRASRGLDQ 333

Query: 359 LAACGQLKSLSKRIPKVP 376
            AACGQL+   +  P  P
Sbjct: 334 NAACGQLRR-QQMAPNTP 350


>gi|218961533|ref|YP_001741308.1| putative radical SAM-dependent enzyme (yfgB) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730190|emb|CAO81102.1| putative radical SAM-dependent enzyme (yfgB) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 350

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 189/361 (52%), Gaps = 26/361 (7%)

Query: 8   SLIGMMREELEEALL--KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           ++  +M E+L ++++  +  +P+  ++    Q+  W+Y   + + + M+++ +E R  L 
Sbjct: 4   NIFSLMPEDLAKSIISRQPDLPEYRIK----QVLSWLYKFYLNEPEKMTNLPEEFRAFLK 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            ++S   PEI  + +S DG  K+ L      I     IE+V IP + + TLC+S+QVGC+
Sbjct: 60  TNYSFFLPEIESKLVSQDGAVKYRLLLEDGKI-----IESVLIPAEKKNTLCLSTQVGCA 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
             C FC TG   L+RNL  +EI+ QV++A   L +             S   K++N+V+M
Sbjct: 115 RNCKFCATGKMGLIRNLATQEIIGQVIIASKELKN-------------SGTAKLTNLVLM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEP+ N  NV  +L I   + G SFS RRIT+ST G VP I  + +  I   LA+SL 
Sbjct: 162 GMGEPMDNLKNVLMALQILQSNAGFSFSPRRITVSTCGVVPGIIALADSGIKAKLALSLT 221

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +     R  L+P++ +Y L  L  A  +Y     + RIT EY+++   N    D   L K
Sbjct: 222 SAIQSKRRKLMPVSDQYNLIQLKQALLYYLR-KTSFRITIEYILIPNFNMDSEDLAALRK 280

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
               +  KIN IP+NP     +    + +I  F +  ++   +  +R  RG DI  ACGQ
Sbjct: 281 FTGDLSCKINFIPYNPGRNSPFRAPTETEIKDFMQRAQKLPQAITLRKSRGADIFGACGQ 340

Query: 365 L 365
           L
Sbjct: 341 L 341


>gi|318042314|ref|ZP_07974270.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
           CB0101]
          Length = 356

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 126/373 (33%), Positives = 188/373 (50%), Gaps = 42/373 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L+GM    LE+   + G        R  Q+  W+Y +G R    +S + +  R  L  
Sbjct: 3   QPLLGMGLSALEDWAKQHG----QAAFRGRQLHDWLYAKGARQLADVSVLPKGFREQLAA 58

Query: 67  H-----FSII-YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
                 F  +     +   ++ DGT K LL          + IETV IP + R T+CVSS
Sbjct: 59  QPPDGAFDWMGRSRELHRSVARDGTTKLLL-----GTHDGLSIETVGIPAEGRLTVCVSS 113

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC TG   L R+L   EI+ QVL  R ++   P                 S
Sbjct: 114 QVGCPMACRFCATGKGGLQRSLAVHEIVDQVLSVREVMEQRP-----------------S 156

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG 236
           ++V MGMGEPL N + V  ++      +G++  +R+IT+ST G    +P +A +  E +G
Sbjct: 157 HVVFMGMGEPLLNIEAVLDAIQCLCTDLGMA--QRQITVSTVGVPRTLPRLAELALERLG 214

Query: 237 ---VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
                LA+SLHA    LR  L+P    YP+E L++ CR Y  ++  RR++FEY++L G+N
Sbjct: 215 RAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLEDCRRYVAITG-RRVSFEYILLGGLN 273

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D PR A  L ++L+G  + +NLIP+NP    E+       +  F   ++    +  +R  
Sbjct: 274 DQPRHAAALAQLLRGFQSHVNLIPYNPIEEEEFQRPTPAAVDGFRRALQDRHVAVSVRAS 333

Query: 354 RGLDILAACGQLK 366
           RGLD  AACGQL+
Sbjct: 334 RGLDADAACGQLR 346


>gi|315925829|ref|ZP_07922036.1| cfr family radical SAM enzyme [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620938|gb|EFV00912.1| cfr family radical SAM enzyme [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 384

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 193/354 (54%), Gaps = 34/354 (9%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLL 90
           + R  Q+++W+Y +        +++ +++R  L   + I + E++  +    DGT+K L+
Sbjct: 58  KFRGRQLFEWLYGKRAMAVDACTNLPKKLRETLKTRWIIDWGEVLGVQADLEDGTKKMLI 117

Query: 91  RFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
           R     C+      ETV +      +LCVSSQVGC++ C+FC +    LVRNLTA E+  
Sbjct: 118 RLADGECV------ETVLMAYDYGYSLCVSSQVGCAMGCAFCASTKGGLVRNLTAGEMAA 171

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q+ L                 V  + G +IS +V+MG+GEPL N+DN+ + + I +   G
Sbjct: 172 QIAL-----------------VEAAEGVRISRVVVMGIGEPLANYDNLLRFIQILNQGFG 214

Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           +    RRIT+ST G VP I R+ +E + + LAISLH+    +R  ++P  R+YPL+ L+ 
Sbjct: 215 IGM--RRITVSTCGIVPMIERLADEALEINLAISLHSPDQAVREQIMPAARRYPLDRLLK 272

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
            C++Y      RR+TFEY ++ G+ND   DA  LI +  G    +NLI  NP     +  
Sbjct: 273 TCKNYFN-KTGRRVTFEYALMAGVNDRDEDAKALIGLFSGENVHLNLIRLNPITDGPFAG 331

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR-IPKV--PRQE 379
           S  +++  F++ +K  G +  IR   G +I AACGQL+   ++ +P V  PR E
Sbjct: 332 S--QNVTGFAKKLKTGGINCTIRRRIGKNIDAACGQLRHRQEQAVPMVTKPRGE 383


>gi|300933099|ref|ZP_07148355.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
           resistens DSM 45100]
          Length = 371

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 203/371 (54%), Gaps = 36/371 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  M REE++EA+ ++G+P    + R  Q+ +  Y R + D + M+D+ +  R  + +  
Sbjct: 21  LADMSREEVKEAVAELGLP----KFRADQLARQYYGRLLADPEEMTDLPENKRGPVRE-- 74

Query: 69  SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             ++P+++     ++ D   TRK L R     +     +E+V +    R TLC+SSQ GC
Sbjct: 75  -ALFPQLMTPLRHLNTDDGETRKTLWRLFDGTL-----LESVLMRYPGRATLCISSQAGC 128

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  E++ QV  A + + D        G V    GR +SNIV 
Sbjct: 129 GMACPFCATGQGGLDRNLSVGEMVEQVRHAAAAMRD--------GEVEGGEGR-LSNIVF 179

Query: 185 MGMGEPLCNF----DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           MGMGEPL N+    D ++K  S   +  G+  S+R +T+ST G  P I ++ +E + V L
Sbjct: 180 MGMGEPLANYKRVVDTIRKITSPPPEGFGI--SQRNVTVSTVGLAPAIRKLADEGMTVRL 237

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ ++ ++DA R+Y   S  RR++ EY +++ +ND P  A
Sbjct: 238 AVSLHTPDDELRDELVPVNNRWSVDEVLDAARYYADTS-GRRVSIEYALIRDMNDQPWRA 296

Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L+G       +N+IP NP PG ++  S +     F   ++  G    +R  +G 
Sbjct: 297 DLLGKKLRGALGSKVHVNVIPLNPTPGSKWDASPKAVQDEFVRRVEAQGVPCTVRDTKGQ 356

Query: 357 DILAACGQLKS 367
           +I AACGQL +
Sbjct: 357 EIAAACGQLAA 367


>gi|302865911|ref|YP_003834548.1| radical SAM enzyme, Cfr family [Micromonospora aurantiaca ATCC
           27029]
 gi|315502468|ref|YP_004081355.1| radical sam enzyme, cfr family [Micromonospora sp. L5]
 gi|302568770|gb|ADL44972.1| radical SAM enzyme, Cfr family [Micromonospora aurantiaca ATCC
           27029]
 gi|315409087|gb|ADU07204.1| radical SAM enzyme, Cfr family [Micromonospora sp. L5]
          Length = 381

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 184/342 (53%), Gaps = 25/342 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCD--GTRKW 88
            R  Q+    + R +RD + M+D+    R  L      +++ P     +++CD   TRK 
Sbjct: 45  FRAKQVSNHYFGRLVRDPERMTDLPAATRERLAGELLPTLLTPV---RELACDDGATRKA 101

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R     +     +E+V +    R T+C+SSQ GC + C FC TG   L RNL+  EI+
Sbjct: 102 LWRLHDGSL-----VESVLMGYPDRVTVCISSQAGCGMACPFCATGQAGLTRNLSTAEIV 156

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASD 206
            Q +    +           G+V  S  R +S++V MGMGEPL N+  V  ++   +A  
Sbjct: 157 DQAVYLAGVAA--------SGVVAGSPPR-LSHVVFMGMGEPLANYSRVVAAIRRLVAPA 207

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             GL  S+R IT+ST G VP I R+  E++ V LA+SLHA  ++LR+ LVP+N+++ +  
Sbjct: 208 PEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTLALSLHAPDDELRDELVPVNQRWKVSE 267

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           ++DA   Y   +  RR++ EY M+K +ND P  A  L ++L G  A +NLIP NP PG  
Sbjct: 268 VLDAAWDY-AATTGRRVSIEYAMIKDVNDQPWRADLLGRLLAGKLAHVNLIPLNPTPGSR 326

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +  S +     F   ++ +G S+ +R  RG +I  ACGQL +
Sbjct: 327 WDASPKPVEREFVRRLRDAGVSTTVRDTRGREIDGACGQLAA 368


>gi|284045197|ref|YP_003395537.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684]
 gi|283949418|gb|ADB52162.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684]
          Length = 329

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 125/337 (37%), Positives = 180/337 (53%), Gaps = 34/337 (10%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R  Q+W+W   RG   ++ M+++   +R  L +        +  E  + DGT K L  
Sbjct: 17  RFRAKQVWEWT-ARGAAGYEEMTNLPAALRATLAERVPFSSLTLQHEAHASDGTVKALF- 74

Query: 92  FPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
                      +E V +  K  R +LC+SSQ GC LTC+FC TGT K  RNLTA EIL Q
Sbjct: 75  ----STHDGRAVEAVLMRYKDGRRSLCLSSQSGCPLTCTFCATGTMKFGRNLTASEILDQ 130

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
            L  R +                    ++ + V MGMGEP+ N D+V  +   A  S+G+
Sbjct: 131 ALHFRRI-------------------EEVDHCVFMGMGEPMMNLDHVLAACR-ALPSIGI 170

Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             + RR  +ST G++P I R+ + E+ + LA+SLHA    LR+ ++P+N +YPL  ++ A
Sbjct: 171 --THRRTAISTVGWIPGIERLTDSEMPIRLALSLHAPDEALRSQIMPVNDRYPLRDVLRA 228

Query: 270 CRHYPGLSNARRITF-EYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           CR +      RR+ F EYVML G+ND    AL L ++L+    K+NLIP+NP     Y  
Sbjct: 229 CRDF--YEKKRRMVFIEYVMLGGVNDGYAQALQLARLLEPWMFKVNLIPYNPTDSI-YDG 285

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           S ++ I TF   ++  G S+ +R  RG DI AACGQL
Sbjct: 286 SSREAIETFRAVLEEHGISATVRLTRGRDIDAACGQL 322


>gi|303273710|ref|XP_003056208.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462292|gb|EEH59584.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 358

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 195/378 (51%), Gaps = 39/378 (10%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           K+ +L+G+   EL+     IG+P    +     I+    VR I D   +   ++      
Sbjct: 4   KRFNLLGLTLSELKRFSADIGLPAYRGKQLRDHIYAGPPVRYIDDLVSLPKATRAALLAA 63

Query: 65  NQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG----TLCV 118
           + H   S ++  +VD     DG  K LLR     +G    IETV IP   RG    T CV
Sbjct: 64  DVHIGRSSVHHVVVDS----DGVVKLLLR-----LGDDKVIETVGIPSLERGKDRLTACV 114

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC + C+FC TG     RNL   EI+ QVL   SL   F              G++
Sbjct: 115 SSQVGCPMRCTFCATGKGGFTRNLAPHEIVDQVL---SLEEHF--------------GKR 157

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGV 237
           ++N+V MGMGEPL N  NV ++ +  +  +G+    R IT+ST G   ++  + G  +  
Sbjct: 158 VTNVVFMGMGEPLLNTPNVLRAYTALNTEIGI--GARHITISTVGVRGSLQMLAGARLQS 215

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA +  LR +L+P  + YPL  L++ C  Y  ++  RR+TFEY +L GINDS  
Sbjct: 216 TLAVSLHAPNQSLREVLIPSAKSYPLGELLNDCEQY-FIATGRRVTFEYTLLAGINDSSE 274

Query: 298 DALNLIKIL--KGIPAKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            A+ L ++L  K + + +NLIP+NP     ++   D+  +  F   ++     + IR  R
Sbjct: 275 QAVELAELLHKKKLASHVNLIPYNPVHDAPDFARPDRATVFKFKNILEEMQVPASIRQSR 334

Query: 355 GLDILAACGQLKSLSKRI 372
           GL+  AACGQL+S  ++I
Sbjct: 335 GLEAAAACGQLRSSFQKI 352


>gi|290957076|ref|YP_003488258.1| hypothetical protein SCAB_25951 [Streptomyces scabiei 87.22]
 gi|260646602|emb|CBG69699.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 368

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 185/362 (51%), Gaps = 29/362 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E +EA+  IG        R  Q+ +  + R   D +  +DI    R  L +    + PE+
Sbjct: 29  ERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGARAKLRE---ALLPEL 81

Query: 76  --VDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
             V   +S D   TRK L R     +     +E+V +    R T+C+SSQ GC + C FC
Sbjct: 82  MTVVRHLSTDQDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGCGMNCPFC 136

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   L RNL+  EI+ Q++     L D           IP    ++SNIV MGMGEPL
Sbjct: 137 ATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------IPGGPARLSNIVFMGMGEPL 187

Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
            N++ V  ++   +D    GL  S+R IT+ST G VP I R  +E     LAISLHA  +
Sbjct: 188 ANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAISLHAPDD 247

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           +LR+ LVP+N ++ +  ++DA   Y   S  RR++ EY +++ IND       L ++LKG
Sbjct: 248 ELRDTLVPVNTRWKVREVLDAGWEYTARS-GRRLSIEYALIRDINDQAWRGDRLGRLLKG 306

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
            P  +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  ACGQL + 
Sbjct: 307 KPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAGHGVPVTVRDTRGQEIDGACGQLAAT 366

Query: 369 SK 370
            +
Sbjct: 367 ER 368


>gi|313816750|gb|EFS54464.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL059PA1]
 gi|315099197|gb|EFT71173.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL059PA2]
          Length = 405

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73
           EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  + +  F ++  
Sbjct: 49  EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129
           ++  +      T K L R      G  VE   +Y P      +R TLC+SSQ GC + C 
Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 161

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           FC TG   + RN++  EI+ QVL A  L+  G+ PG              ++ NIV MGM
Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210

Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GEP+ N+ +V  ++    A    G+  S R +TLST G VP I  V +E I V LA+SLH
Sbjct: 211 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKAVTQEGIPVTLAVSLH 270

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++LR+ L+P+NR++ ++ L+DA  HY      RR++ EY ++K IND    A  L +
Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329

Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  RG +I  
Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 389

Query: 361 ACGQLKSLSK 370
           ACGQL ++ +
Sbjct: 390 ACGQLAAVGR 399


>gi|154491020|ref|ZP_02030961.1| hypothetical protein PARMER_00937 [Parabacteroides merdae ATCC
           43184]
 gi|154088768|gb|EDN87812.1| hypothetical protein PARMER_00937 [Parabacteroides merdae ATCC
           43184]
          Length = 286

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 161/292 (55%), Gaps = 27/292 (9%)

Query: 81  SCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
           S DGT K+L  +PA    GP   +E+VYIP + R TLCVSSQVGC + C FC TG Q   
Sbjct: 18  SVDGTIKYL--YPA----GPGNFVESVYIPTEDRATLCVSSQVGCKMNCLFCMTGKQGFT 71

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           +NL+A EIL Q+          P  E++            +NIV MGMGEPL N D + K
Sbjct: 72  KNLSANEILNQI-------QSLPETEEL------------TNIVFMGMGEPLDNVDELFK 112

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259
            L I + S G ++S +RIT+ST G    + R  EE    LA+SLH+   D R  L+P+ +
Sbjct: 113 VLEILTASYGYAWSPKRITVSTIGVAKGLKRFLEESDCHLAVSLHSPYPDERRSLMPVEK 172

Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
            +P   +I+  + Y   ++ RR++FEY++ K +ND  + A  L+ +L  +P ++NLI F+
Sbjct: 173 AFPACDIIETIKQY-DFTHQRRVSFEYIVFKNLNDDLQHAKALVCLLDKVPCRVNLIRFH 231

Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             P      SD   +  F + +  +G    IR  RG DI AACG L +  K+
Sbjct: 232 AIPNVSLESSDLARMEAFRDTLNAAGIVCTIRASRGEDIFAACGMLSTAKKQ 283


>gi|213964408|ref|ZP_03392608.1| radical SAM enzyme, Cfr family [Corynebacterium amycolatum SK46]
 gi|213952601|gb|EEB63983.1| radical SAM enzyme, Cfr family [Corynebacterium amycolatum SK46]
          Length = 369

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 126/363 (34%), Positives = 187/363 (51%), Gaps = 37/363 (10%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EE + A+ ++G+P      R  QI +  Y R   D   M+D+ +  R  +      ++P 
Sbjct: 31  EERKAAVKELGLPA----FRADQIARHYYGRLEADPMTMTDLPEADRQKVKDS---LFPP 83

Query: 75  IVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
           ++     I+CD   TRK L R      G    +E+V +    R TLC+SSQ GC + C F
Sbjct: 84  LLTPVRHITCDDGETRKTLWR-----AGDGTLLESVLMKYPGRATLCISSQAGCGMACPF 138

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TG   L RNL+  EI+ QV  A + +               + G +++NIV MGMGEP
Sbjct: 139 CATGQGGLQRNLSTAEIVDQVREAAATMA--------------AEGGRLTNIVFMGMGEP 184

Query: 191 LCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVS 247
           L N++ V  ++         G   S R +T+ST GF PNI R+  E++ V LA+SLH   
Sbjct: 185 LANYNRVLAAIHRITRPSPEGFGISMRNVTVSTVGFAPNIRRLADEDLSVTLAVSLHTPD 244

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           ++LR+ LVPIN ++ +  ++DA R+Y      RR++ EY +++ IND    A  L K L 
Sbjct: 245 DELRDELVPINNRFTVAEVLDAARYYAD-KTGRRVSIEYALIRDINDQDWRADLLGKKLH 303

Query: 308 ---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
              G    +NLIP NP PG ++  S +K    F   ++  G    +R  RG +I AACGQ
Sbjct: 304 NALGSRVHVNLIPLNPTPGSKWDASPKKQQEEFVRRVQAQGVPCTVRDTRGNEIAAACGQ 363

Query: 365 LKS 367
           L +
Sbjct: 364 LAA 366


>gi|302554450|ref|ZP_07306792.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472068|gb|EFL35161.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           viridochromogenes DSM 40736]
          Length = 368

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 187/369 (50%), Gaps = 29/369 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +   E +EA+  +G        R  Q+ +  + R   D +  +DI    R  L +  
Sbjct: 22  LADLTPAERKEAVAAVG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGARGRLQE-- 75

Query: 69  SIIYPEI--VDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             + PE+  V   +S D   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  -ALLPELMTVVRHLSTDQGTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++     L D           +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  S+   +D    G+  S+R IT+ST G VP I R  +E     LAI
Sbjct: 181 MGMGEPLANYNRVIGSIRRLTDPEPDGVGLSQRGITVSTVGLVPAIHRFADEGFKCRLAI 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S  RR++ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFEYSAKS-GRRLSIEYALIRDINDQAWRGDR 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG P  +NLIP NP PG ++  S  +D   F E I   G    IR  RG +I  A
Sbjct: 300 LGRMLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAATER 368


>gi|312127903|ref|YP_003992777.1| radical sam enzyme, cfr family [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777922|gb|ADQ07408.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor hydrothermalis
           108]
          Length = 344

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 181/336 (53%), Gaps = 27/336 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLLR 91
            R +Q+++W+Y +   D    +++  E+R  ++  F I   +I+  +   DG   K+L  
Sbjct: 25  FRATQVFEWLYKKNATDVMQFTNLPLELRKKIDDEFLINSLQILQHQ--SDGESIKFLFE 82

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
               C    VE  +V++P +    +CVS+QVGC + C FC +     VRNLT  E++ Q+
Sbjct: 83  L---CDKNGVE--SVFLPYRYGNAICVSTQVGCRMNCRFCASAIGGFVRNLTPGEMVDQI 137

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           + A +                   G++I+N+V+MG GEP  N +NV K + I +   G +
Sbjct: 138 INAENF-----------------TGKRITNVVLMGSGEPFDNIENVFKFIEIINSKEGKN 180

Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
              R IT+ST G V  I R+ +    V LAISLHA +N LR+ LVPIN+KYP+E ++ A 
Sbjct: 181 IGARHITISTVGIVEGIYRLCDFPKQVNLAISLHAPNNSLRDKLVPINKKYPIEDIMKAV 240

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
            +Y   +N RR+TFEY ++ G+NDS   A  L K+LKG    +NLIP NP     +    
Sbjct: 241 DYYIQRTN-RRVTFEYALIDGVNDSIECAQELGKMLKGKLVHVNLIPVNPVEEKGFKRPS 299

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           ++ I TF E ++       IR   G  I AACGQL+
Sbjct: 300 KEKIKTFFETLRSYQIQVTIRRELGSSISAACGQLR 335


>gi|169824362|ref|YP_001691973.1| putative Fe-S-cluster redox protein [Finegoldia magna ATCC 29328]
 gi|205829759|sp|B0S143|RLMN_FINM2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|167831167|dbj|BAG08083.1| putative Fe-S-cluster redox protein [Finegoldia magna ATCC 29328]
          Length = 349

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/369 (33%), Positives = 198/369 (53%), Gaps = 35/369 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  M  +EL+E  +  G        R  Q ++ I+   I +   M++ S  +R  LNQ+ 
Sbjct: 7   LENMTVDELKEFFVNNG----EKPFRALQYFQAIHKNRIFNPDEMTNFSNSLRGKLNQYN 62

Query: 69  SIIYPEIV---DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            I    I+   D K+  D T+K+L+      I     +ETV++  K+  ++C+S+Q+GC 
Sbjct: 63  DIKNCSIIKRIDSKL--DNTKKYLIEMSDGNI-----VETVFMQYKTHTSICLSTQIGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +  +  VRNL   E+  Q+ L  + L       DI          +I+NIV+M
Sbjct: 116 MGCKFCASTKKSFVRNLQPYEMCAQIYLVENDL-------DI----------RINNIVLM 158

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
           G+GEPL N+DNV + + + +D  G   S R ITLST G V  I R+  ++IG+ + ISLH
Sbjct: 159 GIGEPLDNYDNVSRFIDLITDKDGQDMSIRNITLSTCGLVDKIIRLANDDIGINITISLH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
              ++ RN L+PI  KY +E ++DAC +Y   +  RRI FEY +++ +NDS +    L+ 
Sbjct: 219 NPFDNERNKLMPIGNKYSIEEILDACDYYFKKT-KRRIGFEYTVIENVNDSKKYMDKLVS 277

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK     +NLI  NP         D+  +  F E + ++  ++ IR  +G+DI  ACGQ
Sbjct: 278 LLKNRNCLLNLITLNPIEEFNQKSPDRYKMTEFMEYMNKNNVNTTIRRKQGIDIDGACGQ 337

Query: 365 LK--SLSKR 371
           L+  +++KR
Sbjct: 338 LRINNMTKR 346


>gi|225028096|ref|ZP_03717288.1| hypothetical protein EUBHAL_02366 [Eubacterium hallii DSM 3353]
 gi|224954566|gb|EEG35775.1| hypothetical protein EUBHAL_02366 [Eubacterium hallii DSM 3353]
          Length = 349

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 189/364 (51%), Gaps = 29/364 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE-VRHLLNQH 67
           L  M  EEL + ++++G      + R  QI+ W++ + +R  + M ++  + +  LL +H
Sbjct: 7   LKSMTLEELTDCVMELG----EKKFRAKQIYGWLHQKLVRSPEEMKNVPAKCIEKLLKEH 62

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
                 E+   +   DGT+K+L       +     +E+V +  K   ++C+SSQ GC + 
Sbjct: 63  PFYGVEEVEHYESKIDGTQKFLFSLHDGNM-----VESVLMKYKHGNSVCISSQAGCRMG 117

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +    L RNL   E+L Q+                   +  + G ++S++V+MG 
Sbjct: 118 CRFCASTLLGLSRNLYPSEMLDQIY-----------------AIQKATGERVSHLVVMGT 160

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAV 246
           GEP  NF+++ + + +     GL+ S R IT+ST G VP I    +    V LAISLH+ 
Sbjct: 161 GEPFDNFESLCRMIELLCSPDGLNISHRNITVSTCGIVPKIYEFADRNPQVTLAISLHSP 220

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ +R  L+PI  KY ++ L++A R+Y   +  RRITFEY ++KG+ND    A  LI  +
Sbjct: 221 NDTMRRELMPIANKYSMDELMEAARYYT-RTTGRRITFEYSLVKGVNDKKEHAQELISRV 279

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KG+   INLIP NP    ++  S Q ++  F   ++R      +R   G DI AACGQL+
Sbjct: 280 KGMNCHINLIPVNPIKERDFEQSTQNNVAAFKHILERQHIQVTVRREMGRDIQAACGQLR 339

Query: 367 SLSK 370
              K
Sbjct: 340 KSYK 343


>gi|303233967|ref|ZP_07320616.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna BVS033A4]
 gi|302494892|gb|EFL54649.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna BVS033A4]
          Length = 349

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/369 (33%), Positives = 198/369 (53%), Gaps = 35/369 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  M  +EL+E  +  G        R  Q ++ I+   I +   M++ S  +R  LNQ+ 
Sbjct: 7   LENMTVDELKEFFVNNG----EKPFRALQYFQAIHKNRIFNPNEMTNFSNSLREKLNQYN 62

Query: 69  SIIYPEIV---DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            I    I+   D K+  D T+K+L+      I     +ETV++  K+  ++C+S+Q+GC 
Sbjct: 63  DIKNCSIIKRIDSKL--DNTKKYLIEMSDGNI-----VETVFMQYKTHTSICLSTQIGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +  +  VRNL   E+  Q+ L  + L       DI          +I+NIV+M
Sbjct: 116 MGCKFCASTKKSFVRNLQPYEMCAQIYLVENDL-------DI----------RINNIVLM 158

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
           G+GEPL N+DNV + + + +D  G   S R ITLST G V  I R+  ++IG+ + ISLH
Sbjct: 159 GIGEPLDNYDNVIRFIDLITDKDGQDMSIRNITLSTCGLVDKIIRLANDDIGINITISLH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
              ++ RN L+PI  KY +E ++DAC +Y   +  RRI FEY +++ +NDS +    L+ 
Sbjct: 219 NPFDNERNKLMPIGNKYSIEEILDACDYYFKKT-KRRIGFEYTVIENVNDSKKYMDKLVS 277

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK     +NLI  NP         D+  +  F E + ++  ++ IR  +G+DI  ACGQ
Sbjct: 278 LLKNRNCLLNLITLNPIEEFNQKSPDRYKMTEFMEYMNKNNVNTTIRRKQGIDIDGACGQ 337

Query: 365 LK--SLSKR 371
           L+  +++KR
Sbjct: 338 LRINNMTKR 346


>gi|215428321|ref|ZP_03426240.1| hypothetical protein MtubT9_18783 [Mycobacterium tuberculosis T92]
 gi|215431827|ref|ZP_03429746.1| hypothetical protein MtubE_14401 [Mycobacterium tuberculosis
           EAS054]
 gi|260202014|ref|ZP_05769505.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis T46]
 gi|289444435|ref|ZP_06434179.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis T46]
 gi|289751545|ref|ZP_06510923.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289417354|gb|EFD14594.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis T46]
 gi|289692132|gb|EFD59561.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
          Length = 364

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/360 (34%), Positives = 188/360 (52%), Gaps = 36/360 (10%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV-- 76
            A+ ++G+P      R  Q+    Y R I D + M+D+   VR   ++    ++P ++  
Sbjct: 29  SAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVR---DRIAGAMFPNLLTA 81

Query: 77  DEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
              I+CD   TRK L R     + G +  E+V +    R T+C+SSQ GC + C FC TG
Sbjct: 82  SADITCDAGQTRKTLWR----AVDGTM-FESVLMRYSRRNTVCISSQAGCGMACPFCATG 136

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNL+  EIL QV    + L D               G ++SN+V MGMGEPL N+
Sbjct: 137 QGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMGMGEPLANY 183

Query: 195 DNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251
             V  ++    A    G   S R +T+ST G  P I  + +  +GV LA+SLHA  + LR
Sbjct: 184 ARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLHAPDDGLR 243

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---G 308
           + LVP+N ++ +   +DA R+Y  ++  RR++ EY +++ +ND P  A  L K L    G
Sbjct: 244 DTLVPVNNRWRISEALDAARYYANVTG-RRVSIEYALIRDVNDQPWRADLLGKRLHRVLG 302

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
             A +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I AACGQL ++
Sbjct: 303 PLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISAACGQLAAV 362


>gi|315081237|gb|EFT53213.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL078PA1]
          Length = 405

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73
           EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  + +  F ++  
Sbjct: 49  EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129
           ++  +      T K L R      G  VE   +Y P      +R TLC+SSQ GC + C 
Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 161

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           FC TG   + RN++  EI+ QVL A  L+  G+ PG              ++ NIV MGM
Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210

Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GEP+ N+ +V  ++    A    G+  S R +TLST G VP I  + +E I V LA+SLH
Sbjct: 211 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 270

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++LR+ L+P+NR++ ++ L+DA  HY      RR++ EY ++K IND    A  L +
Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAASHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329

Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  RG +I  
Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 389

Query: 361 ACGQLKSLSK 370
           ACGQL ++ +
Sbjct: 390 ACGQLAAVGR 399


>gi|307330070|ref|ZP_07609221.1| radical SAM enzyme, Cfr family [Streptomyces violaceusniger Tu
           4113]
 gi|306884331|gb|EFN15366.1| radical SAM enzyme, Cfr family [Streptomyces violaceusniger Tu
           4113]
          Length = 368

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 188/366 (51%), Gaps = 29/366 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +   E  EA+  +G        R SQ+ +  + R + D    SDI    R  L    
Sbjct: 22  LADLTPAERREAVAALG----EKPFRASQVSRHYFARYVDDPAQWSDIPAAAREKLA--- 74

Query: 69  SIIYPEI--VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + + PE+  V   ISCD   TRK L R       G + +E+V +    R T+C+SSQ GC
Sbjct: 75  AGLLPELMSVVRHISCDDDTTRKTLWRL----FDGTL-VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++     L D           IP    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------IPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGVSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y    + RR++ EY ++K IND    A  
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRVSIEYALIKDINDQAWRADL 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F   ++  G    +R  RG +I  A
Sbjct: 300 LGRLLKGRRVHVNLIPLNPTPGSKWTASRPEDEKAFVAALEAHGVPVTVRDTRGQEIDGA 359

Query: 362 CGQLKS 367
           CGQL +
Sbjct: 360 CGQLAA 365


>gi|314978904|gb|EFT22998.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL072PA2]
 gi|315089293|gb|EFT61269.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL072PA1]
          Length = 405

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73
           EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  + +  F ++  
Sbjct: 49  EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129
           ++  +      T K L R      G  VE   +Y P      +R TLC+SSQ GC + C 
Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 161

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           FC TG   + RN++  EI+ QVL A  L+  G+ PG              ++ NIV MGM
Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210

Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GEP+ N+ +V  ++    A    G+  S R +TLST G VP I  + +E I V LA+SLH
Sbjct: 211 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 270

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++LR+ L+P+NR++ ++ L+DA  HY      RR++ EY ++K IND    A  L +
Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329

Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  RG +I  
Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 389

Query: 361 ACGQLKSLSK 370
           ACGQL ++ +
Sbjct: 390 ACGQLAAVGR 399


>gi|289428733|ref|ZP_06430416.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J165]
 gi|289158131|gb|EFD06351.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J165]
          Length = 376

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73
           EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  + +  F ++  
Sbjct: 20  EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 75

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129
           ++  +      T K L R      G  VE   +Y P      +R TLC+SSQ GC + C 
Sbjct: 76  KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 132

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           FC TG   + RN++  EI+ QVL A  L+  G+ PG              ++ NIV MGM
Sbjct: 133 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 181

Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GEP+ N+ +V  ++    A    G+  S R +TLST G VP I  + +E I V LA+SLH
Sbjct: 182 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 241

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++LR+ L+P+NR++ ++ L+DA  HY      RR++ EY ++K IND    A  L +
Sbjct: 242 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 300

Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  RG +I  
Sbjct: 301 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 360

Query: 361 ACGQLKSLSK 370
           ACGQL ++ +
Sbjct: 361 ACGQLAAVGR 370


>gi|15842421|ref|NP_337458.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis CDC1551]
 gi|31794056|ref|NP_856549.1| hypothetical protein Mb2904c [Mycobacterium bovis AF2122/97]
 gi|121638761|ref|YP_978985.1| hypothetical protein BCG_2901c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148824069|ref|YP_001288823.1| hypothetical protein TBFG_12894 [Mycobacterium tuberculosis F11]
 gi|215404854|ref|ZP_03417035.1| hypothetical protein Mtub0_14428 [Mycobacterium tuberculosis
           02_1987]
 gi|215412721|ref|ZP_03421433.1| hypothetical protein Mtub9_15195 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215447142|ref|ZP_03433894.1| hypothetical protein MtubT_14832 [Mycobacterium tuberculosis T85]
 gi|218754632|ref|ZP_03533428.1| hypothetical protein MtubG1_14859 [Mycobacterium tuberculosis GM
           1503]
 gi|224991253|ref|YP_002645942.1| hypothetical protein JTY_2896 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798032|ref|YP_003031033.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis KZN 1435]
 gi|254232975|ref|ZP_04926302.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254365521|ref|ZP_04981566.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551949|ref|ZP_05142396.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187898|ref|ZP_05765372.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis CPHL_A]
 gi|260206195|ref|ZP_05773686.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis K85]
 gi|289448546|ref|ZP_06438290.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis CPHL_A]
 gi|289553331|ref|ZP_06442541.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289575585|ref|ZP_06455812.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis K85]
 gi|289746679|ref|ZP_06506057.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis 02_1987]
 gi|289763057|ref|ZP_06522435.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294994027|ref|ZP_06799718.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis 210]
 gi|297635496|ref|ZP_06953276.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732495|ref|ZP_06961613.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis KZN R506]
 gi|298526349|ref|ZP_07013758.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306781073|ref|ZP_07419410.1| hypothetical protein TMBG_03023 [Mycobacterium tuberculosis
           SUMu002]
 gi|306785712|ref|ZP_07424034.1| hypothetical protein TMCG_02130 [Mycobacterium tuberculosis
           SUMu003]
 gi|306789752|ref|ZP_07428074.1| hypothetical protein TMDG_00071 [Mycobacterium tuberculosis
           SUMu004]
 gi|306794566|ref|ZP_07432868.1| hypothetical protein TMEG_02147 [Mycobacterium tuberculosis
           SUMu005]
 gi|306798807|ref|ZP_07437109.1| hypothetical protein TMFG_00076 [Mycobacterium tuberculosis
           SUMu006]
 gi|306804654|ref|ZP_07441322.1| hypothetical protein TMHG_02085 [Mycobacterium tuberculosis
           SUMu008]
 gi|306808847|ref|ZP_07445515.1| hypothetical protein TMGG_02414 [Mycobacterium tuberculosis
           SUMu007]
 gi|306968947|ref|ZP_07481608.1| hypothetical protein TMIG_02382 [Mycobacterium tuberculosis
           SUMu009]
 gi|313659828|ref|ZP_07816708.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis KZN V2475]
 gi|61250932|sp|P0A644|RLMN_MYCTU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|61250933|sp|P0A645|RLMN_MYCBO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829812|sp|A1KMM4|RLMN_MYCBP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829852|sp|A5U6N5|RLMN_MYCTA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807189|sp|C1AFZ5|RLMN_MYCBT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|13882723|gb|AAK47272.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|31619651|emb|CAD96591.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121494409|emb|CAL72890.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124602034|gb|EAY61044.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134151034|gb|EBA43079.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148722596|gb|ABR07221.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224774368|dbj|BAH27174.1| hypothetical protein JTY_2896 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253319535|gb|ACT24138.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis KZN 1435]
 gi|289421504|gb|EFD18705.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis CPHL_A]
 gi|289437963|gb|EFD20456.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289540016|gb|EFD44594.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis K85]
 gi|289687207|gb|EFD54695.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis 02_1987]
 gi|289710563|gb|EFD74579.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|298496143|gb|EFI31437.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308326123|gb|EFP14974.1| hypothetical protein TMBG_03023 [Mycobacterium tuberculosis
           SUMu002]
 gi|308329626|gb|EFP18477.1| hypothetical protein TMCG_02130 [Mycobacterium tuberculosis
           SUMu003]
 gi|308333765|gb|EFP22616.1| hypothetical protein TMDG_00071 [Mycobacterium tuberculosis
           SUMu004]
 gi|308337159|gb|EFP26010.1| hypothetical protein TMEG_02147 [Mycobacterium tuberculosis
           SUMu005]
 gi|308340969|gb|EFP29820.1| hypothetical protein TMFG_00076 [Mycobacterium tuberculosis
           SUMu006]
 gi|308344802|gb|EFP33653.1| hypothetical protein TMGG_02414 [Mycobacterium tuberculosis
           SUMu007]
 gi|308348750|gb|EFP37601.1| hypothetical protein TMHG_02085 [Mycobacterium tuberculosis
           SUMu008]
 gi|308353451|gb|EFP42302.1| hypothetical protein TMIG_02382 [Mycobacterium tuberculosis
           SUMu009]
 gi|323718490|gb|EGB27661.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904495|gb|EGE51428.1| radical SAM protein [Mycobacterium tuberculosis W-148]
 gi|328457806|gb|AEB03229.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 364

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/360 (34%), Positives = 188/360 (52%), Gaps = 36/360 (10%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV-- 76
            A+ ++G+P      R  Q+    Y R I D + M+D+   VR   ++    ++P ++  
Sbjct: 29  SAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVR---DRIAGAMFPNLLTA 81

Query: 77  DEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
              I+CD   TRK L R     + G +  E+V +    R T+C+SSQ GC + C FC TG
Sbjct: 82  SADITCDAGQTRKTLWR----AVDGTM-FESVLMRYPRRNTVCISSQAGCGMACPFCATG 136

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNL+  EIL QV    + L D               G ++SN+V MGMGEPL N+
Sbjct: 137 QGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMGMGEPLANY 183

Query: 195 DNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251
             V  ++    A    G   S R +T+ST G  P I  + +  +GV LA+SLHA  + LR
Sbjct: 184 ARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLHAPDDGLR 243

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---G 308
           + LVP+N ++ +   +DA R+Y  ++  RR++ EY +++ +ND P  A  L K L    G
Sbjct: 244 DTLVPVNNRWRISEALDAARYYANVTG-RRVSIEYALIRDVNDQPWRADLLGKRLHRVLG 302

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
             A +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I AACGQL ++
Sbjct: 303 PLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISAACGQLAAV 362


>gi|50842992|ref|YP_056219.1| hypothetical protein PPA1514 [Propionibacterium acnes KPA171202]
 gi|81611434|sp|Q6A7K4|RLMN_PROAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|50840594|gb|AAT83261.1| conserved protein [Propionibacterium acnes KPA171202]
 gi|313763570|gb|EFS34934.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL013PA1]
 gi|313773509|gb|EFS39475.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL074PA1]
 gi|313793963|gb|EFS41987.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA1]
 gi|313801350|gb|EFS42601.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA2]
 gi|313807970|gb|EFS46451.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL087PA2]
 gi|313811561|gb|EFS49275.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL083PA1]
 gi|313819539|gb|EFS57253.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL046PA2]
 gi|313822138|gb|EFS59852.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL036PA1]
 gi|313823628|gb|EFS61342.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL036PA2]
 gi|313825952|gb|EFS63666.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL063PA1]
 gi|313831301|gb|EFS69015.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL007PA1]
 gi|313834912|gb|EFS72626.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL056PA1]
 gi|313839929|gb|EFS77643.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL086PA1]
 gi|314914724|gb|EFS78555.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA4]
 gi|314919314|gb|EFS83145.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL050PA1]
 gi|314920776|gb|EFS84607.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL050PA3]
 gi|314924723|gb|EFS88554.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL036PA3]
 gi|314930455|gb|EFS94286.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL067PA1]
 gi|314954388|gb|EFS98794.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL027PA1]
 gi|314957479|gb|EFT01582.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL002PA1]
 gi|314962106|gb|EFT06207.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL002PA2]
 gi|314963685|gb|EFT07785.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL082PA1]
 gi|314968487|gb|EFT12585.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL037PA1]
 gi|314974177|gb|EFT18273.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL053PA1]
 gi|314976533|gb|EFT20628.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL045PA1]
 gi|314984352|gb|EFT28444.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA1]
 gi|314986542|gb|EFT30634.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA2]
 gi|314990901|gb|EFT34992.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA3]
 gi|315079535|gb|EFT51528.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL053PA2]
 gi|315083603|gb|EFT55579.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL027PA2]
 gi|315087120|gb|EFT59096.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL002PA3]
 gi|315095316|gb|EFT67292.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL038PA1]
 gi|315100320|gb|EFT72296.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL046PA1]
 gi|315106754|gb|EFT78730.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL030PA1]
 gi|327328421|gb|EGE70183.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL096PA2]
 gi|327329713|gb|EGE71469.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL096PA3]
 gi|327444208|gb|EGE90862.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL043PA2]
 gi|327444913|gb|EGE91567.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL043PA1]
 gi|327446398|gb|EGE93052.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL013PA2]
 gi|327452014|gb|EGE98668.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL092PA1]
 gi|327454949|gb|EGF01604.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL087PA3]
 gi|327457765|gb|EGF04420.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL083PA2]
 gi|328755218|gb|EGF68834.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL087PA1]
 gi|328758303|gb|EGF71919.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL025PA2]
 gi|328760026|gb|EGF73607.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL099PA1]
 gi|332675942|gb|AEE72758.1| ribosomal RNA large subunit methyltransferase N [Propionibacterium
           acnes 266]
          Length = 405

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73
           EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  + +  F ++  
Sbjct: 49  EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129
           ++  +      T K L R      G  VE   +Y P      +R TLC+SSQ GC + C 
Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 161

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           FC TG   + RN++  EI+ QVL A  L+  G+ PG              ++ NIV MGM
Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210

Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GEP+ N+ +V  ++    A    G+  S R +TLST G VP I  + +E I V LA+SLH
Sbjct: 211 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 270

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++LR+ L+P+NR++ ++ L+DA  HY      RR++ EY ++K IND    A  L +
Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329

Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  RG +I  
Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 389

Query: 361 ACGQLKSLSK 370
           ACGQL ++ +
Sbjct: 390 ACGQLAAVGR 399


>gi|261414747|ref|YP_003248430.1| radical SAM enzyme, Cfr family [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371203|gb|ACX73948.1| radical SAM enzyme, Cfr family [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327425|gb|ADL26626.1| 23S rRNA m2A2503 methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 357

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 178/333 (53%), Gaps = 13/333 (3%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  QI KW++ + +R +  M +IS  +R  + + F++   +     +S DGT KWL    
Sbjct: 28  RADQIQKWLFCQQVRSYDEMVNISPALREKMAKQFTLCGLKEDQRSVSVDGTVKWLFE-- 85

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
                    IETV IP   R ++CVS+QVGC++ C+FC T      RNL A EIL +++ 
Sbjct: 86  ---TEDGHHIETVMIPANGRYSVCVSTQVGCAMNCAFCRTAKMGFTRNLEAGEILEEIIN 142

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
               L D  G  + EG V      +++NI+ MGMGEPL N +NV +      +    +  
Sbjct: 143 VNWYLKD-NGFMNEEGGVA-----QVTNIIFMGMGEPLNNLENVHRVCCTLHNQKLFNMG 196

Query: 214 KRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            +R+T+STSG VP I   V       LA+SL++ +N+ R+ ++P+N+ +P+E L++A   
Sbjct: 197 AKRMTVSTSGVVPKIKELVDRNTPCCLAVSLNSTNNEYRSSVMPVNKTWPIEKLLEAVDE 256

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   ++   +TFE+V+++ I  +P+ A  LI+I      K+N I  N            +
Sbjct: 257 YIRRTD-NYVTFEFVLIQNITCTPKAAKELIRICAPRRVKVNAIVLNDGDDPTLHAPTPE 315

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++  F   ++ +     IR PRG DILAACGQL
Sbjct: 316 EVEDFLAAVRAAEIQITIRNPRGRDILAACGQL 348


>gi|289426335|ref|ZP_06428078.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK187]
 gi|295131063|ref|YP_003581726.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK137]
 gi|289153063|gb|EFD01781.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK187]
 gi|291376435|gb|ADE00290.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK137]
          Length = 406

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73
           EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  + +  F ++  
Sbjct: 50  EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 105

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129
           ++  +      T K L R      G  VE   +Y P      +R TLC+SSQ GC + C 
Sbjct: 106 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 162

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           FC TG   + RN++  EI+ QVL A  L+  G+ PG              ++ NIV MGM
Sbjct: 163 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 211

Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GEP+ N+ +V  ++    A    G+  S R +TLST G VP I  + +E I V LA+SLH
Sbjct: 212 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 271

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++LR+ L+P+NR++ ++ L+DA  HY      RR++ EY ++K IND    A  L +
Sbjct: 272 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 330

Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  RG +I  
Sbjct: 331 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 390

Query: 361 ACGQLKSLSK 370
           ACGQL ++ +
Sbjct: 391 ACGQLAAVGR 400


>gi|260578946|ref|ZP_05846849.1| Cfr family radical SAM enzyme [Corynebacterium jeikeium ATCC 43734]
 gi|258602920|gb|EEW16194.1| Cfr family radical SAM enzyme [Corynebacterium jeikeium ATCC 43734]
          Length = 345

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 193/365 (52%), Gaps = 41/365 (11%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           E L+E + ++G+P    + R  QI +  Y R   D   M+D+ +  R  + +    ++PE
Sbjct: 7   ETLKERVQELGLP----KFRADQIRRQYYGRLQGDPMEMTDLPESKRAAVKE---ALFPE 59

Query: 75  IVDEKISCDG----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
           ++    + D     TRK L R     +     +E+V +    R TLC+SSQ GC + C F
Sbjct: 60  LMQPMRNMDADDGETRKTLWRLHDGTM-----LESVLMRYPGRATLCISSQAGCGMACPF 114

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TG   L RNL+  E++ Q   A S + +  G              ++SNIV MGMGEP
Sbjct: 115 CATGQGGLDRNLSVGEMVEQARAAASTMQEEGG--------------RLSNIVFMGMGEP 160

Query: 191 LCNF----DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
           L N+    + ++K  + A D  G+  S+R IT+ST G  P I ++  EE+ V LA+SLH 
Sbjct: 161 LANYKRVVETIRKVSAPAPDGFGI--SQRNITVSTVGLAPAIRKLADEEMKVRLAVSLHT 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++LR+ LVP+N ++ +E ++DA R+Y   S  RR++ EY +++ +ND P  A  L K 
Sbjct: 219 PDDELRDELVPVNNRWSVEEVLDAARYYADTS-GRRVSIEYALIRDMNDQPWRADLLGKK 277

Query: 306 LK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           L+   G    +NLIP NP PG ++  S +     F   ++  G    +R  +G +I AAC
Sbjct: 278 LRGALGTKVHVNLIPLNPTPGSKWDASPKDRQDEFVRRVEAQGVPCTVRDTKGQEIAAAC 337

Query: 363 GQLKS 367
           GQL +
Sbjct: 338 GQLAA 342


>gi|118617647|ref|YP_905979.1| hypothetical protein MUL_2078 [Mycobacterium ulcerans Agy99]
 gi|205829818|sp|A0PQ89|RLMN_MYCUA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118569757|gb|ABL04508.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 364

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/358 (34%), Positives = 188/358 (52%), Gaps = 36/358 (10%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-- 77
           A+  +G+P      R  Q+    Y R I D + M+D+   VR   +Q    ++P ++   
Sbjct: 30  AVAALGLPP----FRAKQLAHQYYGRLIADPRQMTDLPAAVR---DQIAETMFPNLLTAA 82

Query: 78  EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
            +++CD   TRK L R       G V +E+V +    R T+C+SSQ GC + C FC TG 
Sbjct: 83  REVTCDAGQTRKTLWR----ATDG-VTVESVLMRYPQRNTVCISSQAGCGMACPFCATGQ 137

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             L RNL+  EI+ QV  A + L D               G ++SN+V MG+GEPL N+ 
Sbjct: 138 GGLTRNLSTAEIVEQVRAAAAALRD-------------EFGDRLSNVVFMGLGEPLANYA 184

Query: 196 NVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            V  ++   ++    G   S R +T+ST G  P I ++ +E +GV LA+SLHA  ++LR+
Sbjct: 185 RVLAAVRRITEPPPTGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSLHAPDDELRD 244

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311
            LVP+N ++ +   ++A  HY      RR++ EY +++ +ND P  A  L K L G    
Sbjct: 245 TLVPVNNRWKISEALEAA-HYYAEVTGRRVSVEYALIREVNDQPWRADLLGKRLHGALGP 303

Query: 312 --KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
              +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I AACGQL +
Sbjct: 304 LVHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAQGVSCTVRDTRGREISAACGQLAA 361


>gi|313829419|gb|EFS67133.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL063PA2]
 gi|315108996|gb|EFT80972.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL030PA2]
          Length = 418

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73
           EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  + +  F ++  
Sbjct: 62  EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 117

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129
           ++  +      T K L R      G  VE   +Y P      +R TLC+SSQ GC + C 
Sbjct: 118 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 174

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           FC TG   + RN++  EI+ QVL A  L+  G+ PG              ++ NIV MGM
Sbjct: 175 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 223

Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GEP+ N+ +V  ++    A    G+  S R +TLST G VP I  + +E I V LA+SLH
Sbjct: 224 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 283

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++LR+ L+P+NR++ ++ L+DA  HY      RR++ EY ++K IND    A  L +
Sbjct: 284 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 342

Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  RG +I  
Sbjct: 343 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 402

Query: 361 ACGQLKSLSK 370
           ACGQL ++ +
Sbjct: 403 ACGQLAAVGR 412


>gi|320106559|ref|YP_004182149.1| radical SAM enzyme, Cfr family [Terriglobus saanensis SP1PR4]
 gi|319925080|gb|ADV82155.1| radical SAM enzyme, Cfr family [Terriglobus saanensis SP1PR4]
          Length = 420

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/414 (32%), Positives = 205/414 (49%), Gaps = 79/414 (19%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-L 63
           +K +L GM   EL E +   G  ++  R R  Q+W  +Y + +     ++ +   +R  L
Sbjct: 23  QKIALFGMALPELIERMGAWG--EKPYRAR--QVWDALYKQRVAALDEITVLPLALRERL 78

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-------------- 109
             +   I  PE+V    S DGT ++L+R     + G   +ETV++P              
Sbjct: 79  ATEGVEIGLPEMVQTATSVDGTERYLMRM----VDGET-VETVWMPDGDGGERGDGSEAA 133

Query: 110 -EKS---------------------------------RGTLCVSSQVGCSLTCSFCYTGT 135
            E+S                                 R T+C+SSQVGC++ C FC T  
Sbjct: 134 VEESDEVVTADEAVDKTNGYKKPDKRNWGALAEKGYRRATICISSQVGCAVNCQFCLTAK 193

Query: 136 QKLVRNLTAEEILLQV--LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
             + RNLTA EI  QV  +L R  +                +G+   N+V MGMGEP  N
Sbjct: 194 LGIKRNLTAGEIAGQVAAVLNRHSV---------------KMGKDRINLVFMGMGEPFLN 238

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
           +D    S+ +  + +G+  S  R+T+STSG  P+I R   E +   LA+SL+A ++ +R 
Sbjct: 239 YDAFMDSVRLLVEGVGIPDS--RMTVSTSGIEPSIRRFATETVRPKLALSLNASNDAVRT 296

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            ++PI +K+ + ML+DA +  P +     +TFEYVML G+ND P+ A  ++ +LKG+ AK
Sbjct: 297 EIMPITKKWNIAMLLDAVKTIP-MGKRDWVTFEYVMLGGVNDQPQHAREVLALLKGMHAK 355

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +NLI +NP PG  Y   D   +  F + +   G  + IR PRG DI AACGQLK
Sbjct: 356 VNLIVWNPGPGIAYSQPDPDAVAVFQKMMIDGGMPTYIRRPRGRDIYAACGQLK 409


>gi|68536246|ref|YP_250951.1| hypothetical protein jk1169 [Corynebacterium jeikeium K411]
 gi|123650875|sp|Q4JV24|RLMN_CORJK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|68263845|emb|CAI37333.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
          Length = 365

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 193/365 (52%), Gaps = 41/365 (11%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           E L+E + ++G+P    + R  QI +  Y R   D   M+D+ +  R  + +    ++PE
Sbjct: 27  ETLKERVQELGLP----KFRADQIRRQYYGRLQGDPMEMTDLPESKRAAVKE---ALFPE 79

Query: 75  IVDEKISCDG----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
           ++    + D     TRK L R     +     +E+V +    R TLC+SSQ GC + C F
Sbjct: 80  LMQPMRNMDADDGETRKTLWRLHDGTM-----LESVLMRYPGRATLCISSQAGCGMACPF 134

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TG   L RNL+  E++ Q   A S + +               G ++SNIV MGMGEP
Sbjct: 135 CATGQGGLDRNLSVGEMVEQARAAASTMQE--------------EGGRLSNIVFMGMGEP 180

Query: 191 LCNF----DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
           L N+    + ++K  + A D  G+  S+R IT+ST G  P I ++  EE+ V LA+SLH 
Sbjct: 181 LANYKRVVETIRKVSAPAPDGFGI--SQRNITVSTVGLAPAIRKLADEEMKVRLAVSLHT 238

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++LR+ LVP+N ++ +E ++DA R+Y   S  RR++ EY +++ +ND P  A  L K 
Sbjct: 239 PDDELRDELVPVNNRWSVEEVLDAARYYADTS-GRRVSIEYALIRDMNDQPWRADLLGKK 297

Query: 306 LK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           L+   G    +NLIP NP PG ++  S +     F   ++  G    +R  +G +I AAC
Sbjct: 298 LRGALGTKVHVNLIPLNPTPGSKWDASPKDRQDEFVRRVEAQGVPCTVRDTKGQEIAAAC 357

Query: 363 GQLKS 367
           GQL +
Sbjct: 358 GQLAA 362


>gi|328752153|gb|EGF65769.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL020PA1]
          Length = 405

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73
           EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  + +  F ++  
Sbjct: 49  EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTLCVSSQVGCSLTCS 129
           ++  +      T K L R      G  VE   +Y P      +R TLC+SSQ GC + C 
Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHTAARATLCLSSQAGCGMACP 161

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           FC TG   + RN++  EI+ QVL A  L+  G+ PG              ++ NIV MGM
Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210

Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GEP+ N+ +V  ++    A    G+  S R +TLST G VP I  + +E I V LA+SLH
Sbjct: 211 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 270

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++LR+ L+P+NR++ ++ L+DA  HY      RR++ EY ++K IND    A  L +
Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329

Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  RG +I  
Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 389

Query: 361 ACGQLKSLSK 370
           ACGQL ++ +
Sbjct: 390 ACGQLAAVGR 399


>gi|172040504|ref|YP_001800218.1| hypothetical protein cur_0824 [Corynebacterium urealyticum DSM
           7109]
 gi|171851808|emb|CAQ04784.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
           7109]
          Length = 370

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 197/374 (52%), Gaps = 32/374 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L  +    +  E++EEA++++G+P    + R  Q++   Y R   D   M+D+ +  R  
Sbjct: 16  LPPKHFADLTAEQVEEAVVELGLP----KFRAKQLYNQYYGRLEGDPLEMTDLPEASRQA 71

Query: 64  LNQHFSIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           + +    ++P ++    K+  D   TRK L R     +     +E+V +    R TLC+S
Sbjct: 72  VKEK---LFPALMTPLRKLDADDGETRKTLWRLHDGTL-----LESVLMRYPGRATLCIS 123

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ GC + C FC TG   L RNL+  EI+ QV  A   + D        G V    GR +
Sbjct: 124 SQAGCGMACPFCATGQGGLDRNLSVGEIVEQVRNAARAMRD--------GEVAGIEGR-L 174

Query: 180 SNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIG 236
           SNIV MGMGEPL N+  V +++      +  G   S+R +T+ST G  P I ++  E++ 
Sbjct: 175 SNIVFMGMGEPLANYKRVVEAVRQITQPEPHGFGISQRNVTVSTVGLAPAIRKLADEDMS 234

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V LA+SLH   ++LR+ LVP+N ++ +E ++DA  +Y   S  RR++ EY +++ IND P
Sbjct: 235 VRLAVSLHTPDDELRDTLVPVNNRWSVEEVLDAAAYYAEKS-GRRVSIEYALIRDINDQP 293

Query: 297 RDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
             A  L K L    G    +NLIP NP PG ++  S ++    F + +   G    +R  
Sbjct: 294 WRADMLGKKLHKALGSKVHVNLIPLNPTPGSKWDASPKERQDEFVQRVIAQGVPCTVRDT 353

Query: 354 RGLDILAACGQLKS 367
           +G +I AACGQL +
Sbjct: 354 KGQEIAAACGQLAA 367


>gi|327334229|gb|EGE75943.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL097PA1]
          Length = 405

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73
           EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  + +  F ++  
Sbjct: 49  EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129
           ++  +      T K L R      G  VE   +Y P      +R TLC+SSQ GC + C 
Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 161

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           FC TG   + RN++  EI+ QVL A  L+  G+ PG              ++ NIV MGM
Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210

Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GEP+ N+ +V  ++    A    G+  S R +TLST G VP I  + +E I V LA+SLH
Sbjct: 211 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 270

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++LR+ L+P+NR++ ++ L+DA  HY      RR++ EY ++K IND    A  L +
Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329

Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  RG +I  
Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 389

Query: 361 ACGQLKSLSK 370
           ACGQL ++ +
Sbjct: 390 ACGQLAAVGR 399


>gi|194476577|ref|YP_002048756.1| hypothetical protein PCC_0094 [Paulinella chromatophora]
 gi|171191584|gb|ACB42546.1| hypothetical protein PCC_0094 [Paulinella chromatophora]
          Length = 350

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 191/373 (51%), Gaps = 36/373 (9%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N L +  L+GM +  LE   +  G        R  QI +W+Y++G RD + ++ + +  R
Sbjct: 4   NALDRIPLLGMGQLALETWAVAHG----QAAFRGRQIHEWMYLKGERDIESITVLPKSWR 59

Query: 62  -HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             L+  +  +     +  +IS DGT K LL+           IETV IP   R T+CVSS
Sbjct: 60  EQLIMANIQLGRSRELQRQISSDGTIKLLLQ----STSDSETIETVGIPTAQRLTVCVSS 115

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG   L R+L   EIL QVL  R ++                  R+ +
Sbjct: 116 QAGCPMACQFCATGKGGLQRSLLTHEILDQVLSIRRVM-----------------DRRPT 158

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG----E 233
           +IV MGMGEPL N + V +S+   +D  G+  S+RRIT+ST G    +P +A +     +
Sbjct: 159 HIVFMGMGEPLLNIEAVLESIQSLNDDFGI--SQRRITISTVGVPRTLPLLAELALKRLD 216

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
                LA+SLHA +  LR  L+P    Y L+ +++ CRHY  ++  RR++FEY++L G+N
Sbjct: 217 RAQFTLAVSLHAPNQSLREKLIPSATAYSLDNILEDCRHYLAIT-GRRVSFEYILLGGVN 275

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D    A  L   + G  + +NLI +NP     +   +   I  F   +K  G S  +R  
Sbjct: 276 DQTFHAEELADRVSGFQSHVNLIAYNPIDDEVFKRPNIFRIERFLSILKHRGLSVSLRAS 335

Query: 354 RGLDILAACGQLK 366
           RGLD  AACGQL+
Sbjct: 336 RGLDKNAACGQLR 348


>gi|320008274|gb|ADW03124.1| radical SAM enzyme, Cfr family [Streptomyces flavogriseus ATCC
           33331]
          Length = 368

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 186/366 (50%), Gaps = 29/366 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +  +E +EA+   G        R  Q+ +  + R   D    ++I    R  L +  
Sbjct: 22  LADLTPDERKEAVAATG----EKPFRAKQLSQHYFTRYAHDPAEWTNIPAASRDKLAE-- 75

Query: 69  SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             ++PE++     ISCD   TRK L +     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  -AMFPELMSVLRHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++     L D           +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y    + RRI+ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRISIEYALIRDINDQAWRGDR 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F E I R G    +R  RG +I  A
Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIARHGVPVTVRDTRGQEIDGA 359

Query: 362 CGQLKS 367
           CGQL +
Sbjct: 360 CGQLAA 365


>gi|313836797|gb|EFS74511.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL037PA2]
 gi|314929795|gb|EFS93626.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL044PA1]
 gi|314972224|gb|EFT16321.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL037PA3]
 gi|328907651|gb|EGG27415.1| cfr family radical SAM enzyme [Propionibacterium sp. P08]
          Length = 414

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 192/376 (51%), Gaps = 35/376 (9%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           I +  EE  +A+  + +P      R  QI   ++ R   D    +D+ +  R  +   + 
Sbjct: 53  IDLSVEERAQAVKDLSLPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAW- 107

Query: 70  IIYPEIVDE--KISCD--GTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQ 121
             +P ++ E  + SCD   T K L R      G  VE   +Y P      +R TLC+SSQ
Sbjct: 108 --FPALLTEVSRQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARTTLCLSSQ 162

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   + RN++  EI+ QVL A  L         I    IP    ++ N
Sbjct: 163 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEIPGASGRVHN 213

Query: 182 IVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEP+ N+ +V   +    A    G+  S R +T+ST G VP I  + EE I V 
Sbjct: 214 IVFMGMGEPMANYRSVLTVIRTLTADGPDGMGMSARALTVSTVGLVPRIKALTEERIPVT 273

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ L+P+NR++ ++ L+DA  HY   S  RR++ EY ++K IND    
Sbjct: 274 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKSK-RRVSIEYALMKDINDQADR 332

Query: 299 ALNLIKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           A  L + ++       A +NLIP NP PG  +  S ++D   F E ++R      +R  R
Sbjct: 333 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRREDQDAFVETLERWKIPVTVRDTR 392

Query: 355 GLDILAACGQLKSLSK 370
           G +I  ACGQL ++ +
Sbjct: 393 GSEIDGACGQLAAVGR 408


>gi|29829163|ref|NP_823797.1| hypothetical protein SAV_2621 [Streptomyces avermitilis MA-4680]
 gi|81719951|sp|Q82JY3|RLMN_STRAW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|29606269|dbj|BAC70332.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 368

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/359 (35%), Positives = 179/359 (49%), Gaps = 23/359 (6%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E +EA+  IG        R  Q+ +  + R   D +  +DI    R  L +        +
Sbjct: 29  ERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGSRAKLQEALLPDLMTV 84

Query: 76  VDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
           V       D TRK L R     +     +E+V +    R T+C+SSQ GC + C FC TG
Sbjct: 85  VRHLSTDQDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGCGMNCPFCATG 139

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNL+  EI+ Q++     L D           IP    ++SNIV MGMGEPL N+
Sbjct: 140 QAGLDRNLSTGEIVHQIVDGMRALRDGE---------IPGGPARLSNIVFMGMGEPLANY 190

Query: 195 DNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLR 251
             V  ++   +D    GL  S+R IT+ST G VP I R  +E     LAISLHA  ++LR
Sbjct: 191 KRVVGAIRALTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAISLHAPDDELR 250

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
           + LVP+N ++ +  ++DA   Y   S  RR++ EY +++ IND       L ++LKG P 
Sbjct: 251 DTLVPVNTRWKVREVLDAGWEYAARSG-RRLSIEYALIRDINDQAWRGDRLGRMLKGRPV 309

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
            +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  ACGQL +  +
Sbjct: 310 HVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGACGQLAATER 368


>gi|314923760|gb|EFS87591.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL001PA1]
 gi|314966226|gb|EFT10325.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL082PA2]
 gi|314981992|gb|EFT26085.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA3]
 gi|315090903|gb|EFT62879.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA4]
 gi|315095116|gb|EFT67092.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL060PA1]
 gi|315104345|gb|EFT76321.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL050PA2]
 gi|327328106|gb|EGE69875.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL103PA1]
          Length = 405

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73
           EE  +A+  +G+P      R  QI   ++ R   D    +D+ +  R  + +  F ++  
Sbjct: 49  EERVQAVKDLGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129
           ++  +      T K L R      G  VE   +Y P      +R TLC+SSQ GC + C 
Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARTTLCLSSQAGCGMACP 161

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           FC TG   + RN++  EI+ QVL A  L+  G+ PG              ++ NIV MGM
Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210

Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GEP+ N+ +V  ++    A    G+  S R +TLST G VP I  + +E I V LA+SLH
Sbjct: 211 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 270

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++LR+ L+P+NR++ ++ L+DA  HY      RR++ EY ++K IND    A  L +
Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329

Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++       A +NLIP NP PG  +  S   D   F E ++R      +R  RG +I  
Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPADQDAFVETLERWKIPVTVRDTRGSEIDG 389

Query: 361 ACGQLKSLSK 370
           ACGQL ++ +
Sbjct: 390 ACGQLAAVGR 399


>gi|299138881|ref|ZP_07032058.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX8]
 gi|298599035|gb|EFI55196.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX8]
          Length = 406

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/415 (32%), Positives = 207/415 (49%), Gaps = 82/415 (19%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLN 65
            +L G    EL E  L  G+ Q+  R R  Q+++ +Y + +   + ++ +SQE+R  L +
Sbjct: 2   HALFGKTLPELTE--LMAGLGQKPYRAR--QVFEALYKQRVGLVEDVTTLSQELRDRLTS 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------------- 112
           + F+I  PEI     S DGT ++L+R     +     +ETV++P+               
Sbjct: 58  EGFAIGLPEIAQTAKSVDGTERYLMR-----MADGETVETVWMPDGDGGERGDGSEAAEE 112

Query: 113 --------------------------------------RGTLCVSSQVGCSLTCSFCYTG 134
                                                 R T+C+SSQVGC++ C FC T 
Sbjct: 113 ESAEVVVAEEAVDGGYWSRRGNGRDRSNFGTLAEQGFRRATICISSQVGCAVNCQFCLTA 172

Query: 135 TQKLVRNLTAEEILLQV--LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
              + RNLTA EI  QV  +L R  +                +G+   N+V MGMGEP  
Sbjct: 173 KLGIKRNLTAGEIAGQVAAVLNRHRI---------------QIGKDRINLVFMGMGEPFL 217

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLR 251
           N++   +S+ +  + +G+  S  R+T+STSG +P I A   E +   LA+SL+A ++ +R
Sbjct: 218 NYEQFMQSVRVLVEGIGIPES--RMTVSTSGILPGIEAFAKETMRPKLALSLNASNDVVR 275

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             ++PI RK+ +  L++A +  P L     +TFEYV+L  +ND P  A  ++++L GI A
Sbjct: 276 ERIMPITRKWNIAALLEAVQKIP-LRTREWVTFEYVLLGEVNDQPEHAREVLELLDGIRA 334

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           K+NLI +NP PG +Y      D+  F + +   G ++ IR PRG DI AACGQLK
Sbjct: 335 KVNLIVWNPGPGIDYHQPKPADVAVFQKMLIEGGIATYIRRPRGRDIYAACGQLK 389


>gi|229817667|ref|ZP_04447949.1| hypothetical protein BIFANG_02938 [Bifidobacterium angulatum DSM
           20098]
 gi|229785456|gb|EEP21570.1| hypothetical protein BIFANG_02938 [Bifidobacterium angulatum DSM
           20098]
          Length = 395

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 190/365 (52%), Gaps = 24/365 (6%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
            + M  +E      ++G+P    + R  Q+    Y     +    +D     R   ++  
Sbjct: 46  FVDMSEDERIAKAKELGLP----KFRVKQLANHYYGHFDVNAAAFTDFPASKR---DEAA 98

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           S+ +PE++ E       +   ++   R   G   IE+V +   +R TLC+SSQVGC + C
Sbjct: 99  SVFFPELITEVTRQVADKGTTIKTLWRLFDGS-HIESVLMRYPTRSTLCISSQVGCGMGC 157

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG   L RN++A EIL QV +A  ++ D        G V    GR +SNIV MGMG
Sbjct: 158 PFCATGQLGLTRNMSAGEILEQVRVAARMMQD--------GEVAGGPGR-LSNIVFMGMG 208

Query: 189 EPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           EP+ N+ +V  ++   S     G   S R IT+ST G VP I ++ EE I V LA+SLHA
Sbjct: 209 EPMGNYRSVLSAVRQISALPPQGFGISARNITVSTVGVVPGIRKLTEEGIPVRLAVSLHA 268

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            S++LR+ LVP+N+++    ++DA   Y  L+  RR++ EY +++GIND    A  L K 
Sbjct: 269 PSDELRDELVPMNKRFNTTAVLDAAHDY-WLATKRRVSIEYALMRGINDQAEHARLLAKR 327

Query: 306 LKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           L       A +N IP NP  G ++  S  +D   F + +  +G ++ +R  RG DI  AC
Sbjct: 328 LNHYGDDWAHVNPIPLNPIEGSKWTASKPEDEKRFLDILHAAGITATLRDTRGQDIDGAC 387

Query: 363 GQLKS 367
           GQL +
Sbjct: 388 GQLAA 392


>gi|302380492|ref|ZP_07268957.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311435|gb|EFK93451.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 349

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/367 (33%), Positives = 196/367 (53%), Gaps = 31/367 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  M  +EL+E  +  G        R  Q ++ I+   I +   M++ S  +R  LNQ+ 
Sbjct: 7   LENMTVDELKEFFVNNG----EKPFRALQYFQAIHKNRIFNPDDMTNFSNNLRGKLNQYN 62

Query: 69  SIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I    I+    S  D T+K+L+      I     +ETV++  K+  ++C+S+Q+GC + 
Sbjct: 63  DIKNCSIIKRINSKLDNTKKYLIEMSDGNI-----VETVFMQYKTHTSICLSTQIGCKMG 117

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +  +  VRNL   E+  Q+ L  + L       DI          +I+NIV+MG+
Sbjct: 118 CKFCASTKKSFVRNLQPYEMCAQIYLVENDL-------DI----------RINNIVLMGI 160

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246
           GEPL N+DNV + + + +D  G   S R ITLST G V  I R+  ++IG+ + ISLH  
Sbjct: 161 GEPLDNYDNVSRFIDLITDKDGQDMSIRNITLSTCGLVDKIIRLADDDIGINITISLHNP 220

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++ RN L+PI  KY +E ++DAC +Y   +  RRI FEY +++ +NDS +    L+ +L
Sbjct: 221 FDNERNKLMPIGNKYSIEEILDACDYYFKKT-KRRIGFEYTVIENVNDSKKYMDKLVSLL 279

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           K     +NLI  NP         D+  +  F E + ++  ++ IR  +G+DI  ACGQL+
Sbjct: 280 KNRNCLLNLITLNPIEEFNQKSPDRFKMTEFMEYMNKNNVNTTIRRKQGIDIDGACGQLR 339

Query: 367 --SLSKR 371
             +++KR
Sbjct: 340 INNMTKR 346


>gi|225449545|ref|XP_002283725.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296086245|emb|CBI31686.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 196/375 (52%), Gaps = 40/375 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
           L+GM  +EL++  L +G        R  Q+   IY R +++ Q  S + Q  R+ L +  
Sbjct: 45  LLGMSEQELQQLSLDLG----QQSYRGKQLHHLIYKRKVKEIQHFSQLPQAFRNDLQEGG 100

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRG----TLCVSSQV 122
           + +    I     + DGT K L++     +     +ETV IP E  +G    T CVSSQV
Sbjct: 101 WRVGRSSIYQSVTAADGTVKLLIKLADNRL-----VETVGIPVEHDKGSFRLTACVSSQV 155

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L CSFC TG     RNL   EI+ QVL            E+I         ++++N+
Sbjct: 156 GCPLRCSFCATGKGGYSRNLQRHEIVEQVL----------AIEEI-------FKQRVTNV 198

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLA 240
           V MGMGEP+ N  +V ++    +  + +   +R IT+S+ G VPN  +     ++   LA
Sbjct: 199 VFMGMGEPMLNLKSVIEAHRCLNKDVQI--GQRMITISSVG-VPNTIKKLASYKLQSTLA 255

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +  LR  +VP  + YPL+ ++  CR Y  L  +RR++FEY +L G+ND+   A+
Sbjct: 256 ISLHAPNQKLRETIVPSAKSYPLDAIMKDCRDY-FLETSRRVSFEYTLLAGVNDAVEHAI 314

Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
            L ++L   G    +NLIPFNP  G E+     K +  F+  ++    +  +R  RGLD 
Sbjct: 315 ELAELLHEWGPGYHVNLIPFNPIEGSEFQRPYNKAVQAFAGALESRKVTVSVRQTRGLDA 374

Query: 359 LAACGQLKSLSKRIP 373
            AACGQL++  ++IP
Sbjct: 375 SAACGQLRNEFQKIP 389


>gi|328956372|ref|YP_004373705.1| 23S rRNA m(2)A-2503 methyltransferase [Coriobacterium glomerans
           PW2]
 gi|328456696|gb|AEB07890.1| 23S rRNA m(2)A-2503 methyltransferase [Coriobacterium glomerans
           PW2]
          Length = 348

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 176/338 (52%), Gaps = 30/338 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +Q+ +W++ +    F  M+++ +  R  L + FS   P  + ++IS D TRK+LL F
Sbjct: 30  FRATQVLEWLHKKNASSFDEMTNLPKSFRTQLAERFSFAVPRQIAQQISRDRTRKYLLEF 89

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                   V +E V IP + + T C+S+Q GC + C+FC TG   L R+ TA E++ QVL
Sbjct: 90  -----SDGVSVEAVGIPGRGKLTACISTQAGCGMRCAFCATGLAGLARSCTAREMVDQVL 144

Query: 153 -LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            +AR    DF                +++++V MG GEP  NFD   ++L   +D  GL 
Sbjct: 145 HIAR----DF--------------NERVTSVVFMGQGEPFANFDETVRALRTLNDPRGLK 186

Query: 212 FSKRRITLSTSGFVPNI---ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
              R +T+ST G +P I   A++ E+    LAISLH+ S   RN L+P  +KY L  L +
Sbjct: 187 IGARHLTVSTCGIIPGIRAFAKLPEQF--TLAISLHSASQQTRNQLMPGVKKYTLPRLYE 244

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           A + Y   +  RR T+E  M++GIND+  +   +    +G    +NLI  + +P  E   
Sbjct: 245 ALQEYVE-ATGRRPTYEIAMIEGINDTNPEMRAICDFCEGTLCHVNLIQLSDFPDSELHP 303

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           S    +    + +   G  + IR  RG DI AACGQLK
Sbjct: 304 SPLFKLEELQKRLTARGVQTTIRCSRGADIDAACGQLK 341


>gi|296393255|ref|YP_003658139.1| radical SAM enzyme, Cfr family [Segniliparus rotundus DSM 44985]
 gi|296180402|gb|ADG97308.1| radical SAM enzyme, Cfr family [Segniliparus rotundus DSM 44985]
          Length = 368

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 186/366 (50%), Gaps = 36/366 (9%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           EL +A+  +G        R  Q+ +  Y R   D + M+D+    R  L + F    P++
Sbjct: 27  ELRDAVAGLG----EKPFRAGQLARHYYTRLTVDPEAMTDVPAASRGALAEAF---LPDL 79

Query: 76  VD--EKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
           V     + CD   T K L R     +     +E+V +    R TLCVSSQ GC + C FC
Sbjct: 80  VTPARTMGCDRGETVKTLWRLHDGSL-----VESVLMAYADRVTLCVSSQAGCGMACPFC 134

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   L RNL+  EI+ QV LA     D           +    R +SNIV MGMGEPL
Sbjct: 135 ATGQGGLTRNLSTAEIVEQVRLAALAARDGK---------LAGGARHLSNIVFMGMGEPL 185

Query: 192 CNF----DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
            N+    D V++  S A +  G+  S+R + +ST G VP I R+  E + V LA+SLHA 
Sbjct: 186 ANYRRVLDAVRRITSPAPEGFGI--SQRSVVVSTVGLVPAIHRLANEGLSVTLAVSLHAP 243

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++LR+ LVP+N ++P+  ++ A + Y      RR++ EY +++ +ND P  A  L  +L
Sbjct: 244 DDELRDTLVPVNTRWPVAEVLAAAKGY-AQQTGRRVSVEYALIRDVNDQPWRADLLGGLL 302

Query: 307 K---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
               G  A +NLIP NP PG E+  S  +    F   ++  G S  +R  RG +I AACG
Sbjct: 303 HEALGSLAHVNLIPLNPTPGSEWDASPPEAQREFVRRVRAKGVSCTVRDTRGQEIAAACG 362

Query: 364 QLKSLS 369
           QL   S
Sbjct: 363 QLAGSS 368


>gi|333024150|ref|ZP_08452214.1| putative cfr family radical SAM enzyme [Streptomyces sp. Tu6071]
 gi|332744002|gb|EGJ74443.1| putative cfr family radical SAM enzyme [Streptomyces sp. Tu6071]
          Length = 369

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/362 (35%), Positives = 186/362 (51%), Gaps = 29/362 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E +EA+  IG        R  Q+ +  + R  +D    +DI    R  L +    + PE+
Sbjct: 30  ERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE---ALLPEL 82

Query: 76  --VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
             V   ISCD   TRK L R       G + +E+V +    R T+C+SSQ GC + C FC
Sbjct: 83  MSVVRHISCDDDTTRKTLWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFC 137

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   L RNL+A EI+ Q++     L D           IP    ++SNIV MGMGEPL
Sbjct: 138 ATGQAGLDRNLSAAEIVHQIVEGMRALRDGE---------IPGGPARLSNIVFMGMGEPL 188

Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
            N++ V  ++   +D    GL  S+R IT+ST G VP I R  +E     LA+SLHA  +
Sbjct: 189 ANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAVSLHAPDD 248

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           +LR+ LVP+N ++ +  ++DA   Y    + RR++ EY +++ IND       L ++LK 
Sbjct: 249 ELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRVSIEYALIRDINDQAWRGDLLGRLLKN 307

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
               +NLIP NP PG ++  S  +D   F + I   G    +R  RG +I  ACGQL + 
Sbjct: 308 KRVHVNLIPLNPTPGSKWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGACGQLAAA 367

Query: 369 SK 370
            +
Sbjct: 368 ER 369


>gi|303232118|ref|ZP_07318821.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513224|gb|EFL55263.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 348

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 182/343 (53%), Gaps = 26/343 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLL 90
           + R  Q+  +IY R I  FQ M+   + +R  L+ +  I  P+++ + +S DG T+K LL
Sbjct: 23  KFRAKQLIDYIYHRHIFVFQDMTQFPKNLRDWLDSNCIISIPKVITQSVSPDGKTQKLLL 82

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
                       IE V + +    ++CVSSQVGC++ C FC +    L R+L+  EI+ Q
Sbjct: 83  ELTDHS-----RIEAVLMEQYYGNSVCVSSQVGCAMGCVFCASTQGGLFRDLSVSEIVGQ 137

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           V+L  +L       EDI  +V+            MG GEPL N+DNV ++L +  D M  
Sbjct: 138 VVLFSAL-----KQEDIHSLVV------------MGAGEPLQNYDNVLQALKLIHDPMTF 180

Query: 211 SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S R++T+ST G+VPNI ++  E++ + LA+SLHA +++ R  ++P+  +Y L+ ++DA
Sbjct: 181 DISYRKMTISTCGWVPNIYKLADEDLPITLALSLHATTDETRRKIMPVGSRYKLDEVLDA 240

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGCEYLC 328
            ++Y      RRITFEY+++  IN S  +A  L  I K  P   +NLIP N         
Sbjct: 241 VKYYYE-KTQRRITFEYILIDSINVSLEEAHELGNIGKAFPNCHVNLIPVNGNEHINLYK 299

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
              K +  F + +   G S  IR   G  I AACGQLK    R
Sbjct: 300 PSSKHMNIFKDIVASYGVSVTIRKEMGDAIQAACGQLKVAHGR 342


>gi|294631675|ref|ZP_06710235.1| cfr family radical SAM enzyme [Streptomyces sp. e14]
 gi|292835008|gb|EFF93357.1| cfr family radical SAM enzyme [Streptomyces sp. e14]
          Length = 368

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/362 (35%), Positives = 184/362 (50%), Gaps = 29/362 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E +EA+  IG        R  Q+ +  + R   D +  +DI    R  L +    + PE+
Sbjct: 29  ERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGSREKLRE---ALLPEL 81

Query: 76  --VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
             V   +S D   TRK L R       G + +E+V +    R T+C+SSQ GC + C FC
Sbjct: 82  MSVVRHLSTDAGTTRKTLWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFC 136

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   L RNL+  EI+ Q++     L D           +P    ++SNIV MGMGEPL
Sbjct: 137 ATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVFMGMGEPL 187

Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
            N+  V  ++   +D    GL  S+R +T+ST G VP I R  +E     LAISLHA  +
Sbjct: 188 ANYKRVVGAIRALTDPEPDGLGLSQRGVTVSTVGLVPAIHRFSDEGFKCRLAISLHAPDD 247

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           +LR+ LVP+N ++ +  ++DA   Y   S  RR++ EY +++ IND       L ++LKG
Sbjct: 248 ELRDTLVPVNTRWKVREVLDAGFEYAAKSG-RRLSIEYALIRDINDQAWRGDRLGRLLKG 306

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
            P  +N IP NP PG ++  S  +D   F E I   G    IR  RG +I  ACGQL + 
Sbjct: 307 RPVHVNCIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGACGQLAAT 366

Query: 369 SK 370
            +
Sbjct: 367 ER 368


>gi|282854662|ref|ZP_06263997.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J139]
 gi|282582244|gb|EFB87626.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J139]
          Length = 376

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73
           EE  +A+  +G+P      R  QI   ++ R   D    +D+ +  R  + +  F ++  
Sbjct: 20  EERVQAVKDLGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 75

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129
           ++  +      T K L R      G  VE   +Y P      +R TLC+SSQ GC + C 
Sbjct: 76  KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARTTLCLSSQAGCGMACP 132

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           FC TG   + RN++  EI+ QVL A  L+  G+ PG              ++ NIV MGM
Sbjct: 133 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 181

Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GEP+ N+ +V  ++    A    G+  S R +TLST G VP I  + +E I V LA+SLH
Sbjct: 182 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 241

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++LR+ L+P+NR++ ++ L+DA  HY      RR++ EY ++K IND    A  L +
Sbjct: 242 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 300

Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++       A +NLIP NP PG  +  S   D   F E ++R      +R  RG +I  
Sbjct: 301 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPADQDAFVETLERWKIPVTVRDTRGSEIDG 360

Query: 361 ACGQLKSLSK 370
           ACGQL ++ +
Sbjct: 361 ACGQLAAVGR 370


>gi|46445973|ref|YP_007338.1| hypothetical protein pc0339 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81627607|sp|Q6MED6|RLMN1_PARUW RecName: Full=Ribosomal RNA large subunit methyltransferase N 1;
           AltName: Full=23S rRNA m2A2503 methyltransferase 1
 gi|46399614|emb|CAF23063.1| hypothetical protein pc0339 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 358

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/270 (38%), Positives = 157/270 (58%), Gaps = 20/270 (7%)

Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           ++I++V IP ++ GTLC+SSQ+GC + C+FC TG   L+RNLT +EIL Q+ +A+  L  
Sbjct: 92  LDIKSVLIPMQAGGTLCISSQIGCQMGCAFCETGRMGLLRNLTTQEILSQLFIAKFRL-- 149

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
                             + NIV MGMGEP  N+D V  +  I +DS G      RIT+S
Sbjct: 150 ---------------HFSVRNIVFMGMGEPFDNYDTVMHAFRILTDSHGFGLGNNRITIS 194

Query: 221 TSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           TSG +  I R+ +E   +  LA+SL+A +++LRN L+PIN+KYPL+ L  A   +     
Sbjct: 195 TSGCLEGIYRLLQETTPLPNLAVSLNAPNDELRNKLMPINKKYPLKELYQAIYDFCK-QT 253

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFS 338
           ++++   YV++K  NDS   A  L   L G+  KINLIP+NP     +   +Q  +  F+
Sbjct: 254 SKQVLIAYVLIKEQNDSIEHAKQLTNFLSGLNVKINLIPYNPQSRDRFQSPEQSTLENFT 313

Query: 339 ECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
             ++  G+ + +R  +G  I+AACGQL +L
Sbjct: 314 SYLREKGFYTLLRQTKGQKIMAACGQLGNL 343


>gi|260905210|ref|ZP_05913532.1| radical SAM enzyme, Cfr family protein [Brevibacterium linens BL2]
          Length = 410

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 130/399 (32%), Positives = 199/399 (49%), Gaps = 46/399 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L  M  +E  +A+ ++G+P      R  QI    +     D + M+D+ +++R  L 
Sbjct: 19  KQHLADMTMDERIDAVKEMGLPA----FRAKQISTHYFSHYQTDVESMTDLPKDLRADLQ 74

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F   +P ++ E           ++F  R   G + +E+V +  ++R TLCVSSQ GC 
Sbjct: 75  ERF---FPHLLTEVRRLRTANGDTIKFLWRLYDGAL-VESVLMRYRNRVTLCVSSQCGCG 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG----------DFP-------GCE--- 165
           + C FC TG Q L RN++A EI+ QV+ A  ++           D P       G E   
Sbjct: 131 MNCPFCATGQQGLTRNMSAAEIVEQVIRANQVIAAGELAPAPTSDMPAEGETALGAEADD 190

Query: 166 ----------DIEGMVIPSVG-RKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSF 212
                     D  G    + G  ++SNIV MGMGEPL N+  V  ++   +     GL  
Sbjct: 191 EQGETSEATVDESGTSTSATGPERVSNIVFMGMGEPLANYKRVMNAVRRFVEPAPQGLGM 250

Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S RRIT+ST G VP I ++  E+I V  A+SLHA  ++LR+ ++P+N ++  +  IDA  
Sbjct: 251 SARRITISTVGLVPGINKLAAEDIPVTFALSLHAPDDELRDEMIPVNTRWKADEAIDAAY 310

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLC 328
           +Y  ++  RR++ EY ++K +ND P  A  L K L         +N IP NP PG  +  
Sbjct: 311 NYYQVT-GRRVSIEYALIKDMNDHPWRAELLAKKLNARGRGWVHVNPIPLNPTPGSVWTA 369

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           S+ +    F   +   G  + IR  RG DI  ACGQL +
Sbjct: 370 SEPEVADEFVRRLIDQGIPTTIRDTRGSDIDGACGQLAA 408


>gi|302542187|ref|ZP_07294529.1| cfr family radical SAM enzyme [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459805|gb|EFL22898.1| cfr family radical SAM enzyme [Streptomyces himastatinicus ATCC
           53653]
          Length = 372

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 181/345 (52%), Gaps = 25/345 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VDEKISCDG--TRKW 88
            R +Q+ +  + R   D    +D+    R  L    + + P++  V   ISCD   TRK 
Sbjct: 46  FRAAQVSRHYFARYTDDPAQWTDVPAAAREKLA---AGLLPDLMSVVRHISCDDDTTRKT 102

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R       G + +E+V +    R T+C+SSQ GC + C FC TG   L RNL+  EI+
Sbjct: 103 LWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIV 157

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q++     L D           IP    ++SNIV MGMGEPL N++ V  ++   +D  
Sbjct: 158 HQIVDGMRALRDGE---------IPGGPARLSNIVFMGMGEPLANYNRVIGAIRRLTDPE 208

Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             GL  S+R IT+ST G VP + R  +E     LA+SLHA  ++LR+ LVP+N ++ +  
Sbjct: 209 PDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVRE 268

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           ++DA   Y    + RRI+ EY ++K IND    A  L ++LKG    +NLIP NP PG +
Sbjct: 269 VLDAAWEY-AEKSGRRISIEYALIKDINDQAWRADLLGRLLKGHRVHVNLIPLNPTPGSK 327

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           +  S  +D   F   ++R G    +R  RG +I  ACGQL +  +
Sbjct: 328 WTASRPEDEKAFVAALERHGVPVTVRDTRGQEIDGACGQLAATER 372


>gi|260436262|ref|ZP_05790232.1| radical SAM enzyme, Cfr family [Synechococcus sp. WH 8109]
 gi|260414136|gb|EEX07432.1| radical SAM enzyme, Cfr family [Synechococcus sp. WH 8109]
          Length = 352

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 186/368 (50%), Gaps = 37/368 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLN 65
           ++L+G    EL++      + Q     R  Q+  WIY +G R    ++   +  R  LL 
Sbjct: 3   QALLGRSAAELQD----WAVAQGQKPFRGRQLHDWIYAKGARSLADITVFPKTWRAALLE 58

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +   + V   ++ D T K LL            IETV IP   R T+CVSSQVGC 
Sbjct: 59  GGIDVGRLKEVHRSVATDATTKLLL-----STEDGETIETVGIPTDQRLTVCVSSQVGCP 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L R+L   EI+ QVL  R                  ++ R+ S+IV M
Sbjct: 114 MACRFCATGKGGLQRSLQTHEIVDQVLSVRE-----------------AMDRRPSHIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---VM 238
           GMGEPL N   V +++   +D +G+   +RRIT+ST G    +P +A +  + +G     
Sbjct: 157 GMGEPLLNSSAVLEAIRCLNDDLGIG--QRRITVSTVGVPKTLPQLAELAMQRLGRAQFT 214

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA +  LR  L+P    YP + L++ CRHY  ++  RR++FEY++L  +ND P  
Sbjct: 215 LAVSLHAPNQRLREELIPTAHAYPYDALLEDCRHYLDVT-GRRVSFEYILLGELNDQPEH 273

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L   + G  + +NLI +NP    E+     + I  F   ++R G +  +R  RGLD 
Sbjct: 274 AAELADRVGGFQSHVNLIAYNPIEEEEFKRPTPQRIEVFRRVLERRGVAVSLRASRGLDQ 333

Query: 359 LAACGQLK 366
            AACGQL+
Sbjct: 334 NAACGQLR 341


>gi|240171730|ref|ZP_04750389.1| hypothetical protein MkanA1_20620 [Mycobacterium kansasii ATCC
           12478]
          Length = 364

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/358 (33%), Positives = 194/358 (54%), Gaps = 36/358 (10%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-- 77
           A+ ++G+P      R  Q+    + R I D + MSD+   VR ++    + ++P ++   
Sbjct: 30  AVAELGLPA----FRAKQLAHHYFGRLIADPRQMSDLPAAVRDVIA---AAMFPTLLTAV 82

Query: 78  EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
            +++CD   TRK L R     + G   +E+V +    R T+C+SSQ GC + C FC TG 
Sbjct: 83  REVTCDAGQTRKTLWR----AVDG-ATVESVLMRYPQRNTVCISSQAGCGMACPFCATGQ 137

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             L RNL+  EI+ QV  A + + D               G ++SN+V MGMGEPL N+ 
Sbjct: 138 GGLTRNLSTAEIVEQVRAAAAAMRD-------------DFGDRLSNVVFMGMGEPLANYS 184

Query: 196 NVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            V  ++   ++    G   S R +T+ST G  P I ++ +E +GV LA+SLHA  ++LR+
Sbjct: 185 RVVAAVRRITEPPPCGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSLHAPDDELRD 244

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GI 309
            LVP+N ++ ++  +DA R+Y  ++  RR++ EY +++G+ND    A  L + L    G 
Sbjct: 245 TLVPVNNRWKVDEALDAARYYAEVTG-RRVSVEYALIRGVNDQRWRADLLGRRLHRALGP 303

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
              +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I AACGQL +
Sbjct: 304 LVHVNLIPLNPTPGSDWDASPKPVERDFVKHVRAQGVSCTVRDTRGREISAACGQLAA 361


>gi|313813381|gb|EFS51095.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL025PA1]
          Length = 405

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 187/370 (50%), Gaps = 33/370 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73
           EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  + +  F ++  
Sbjct: 49  EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129
           ++  +      T K L R      G  VE   +Y P      +R TLC+SSQ GC + C 
Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 161

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           FC TG   + RN++  EI+ QVL A  L+  G+ PG              ++ NIV MGM
Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210

Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GEP+ N+ +V   +    A    G+  S R +TLST G VP I  + +E I V LA+SLH
Sbjct: 211 GEPMANYRSVLTVIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 270

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++LR+ L+P+NR++ ++ L+DA  HY      RR++ EY ++K IND    A  L +
Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329

Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  RG +I  
Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 389

Query: 361 ACGQLKSLSK 370
           ACGQL ++ +
Sbjct: 390 ACGQLAAVGR 399


>gi|254392089|ref|ZP_05007278.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294815391|ref|ZP_06774034.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443743|ref|ZP_08218477.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705765|gb|EDY51577.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294327990|gb|EFG09633.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
           clavuligerus ATCC 27064]
          Length = 368

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 185/369 (50%), Gaps = 29/369 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +   E +EA+  IG        R  Q+ +  + R   D    +DI    R  L    
Sbjct: 22  LADLTPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPAAWTDIPAAARERLA--- 74

Query: 69  SIIYPEI--VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           S + P++  V   +SCD   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 75  SELLPDLMSVVRHVSCDNDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++     L D           +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y    + RR++ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRVSIEYALIRDINDHAWRGDL 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  A
Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAAAER 368


>gi|256390734|ref|YP_003112298.1| ribosomal RNA large subunit methyltransferase N [Catenulispora
           acidiphila DSM 44928]
 gi|256356960|gb|ACU70457.1| radical SAM enzyme, Cfr family [Catenulispora acidiphila DSM 44928]
          Length = 395

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 195/371 (52%), Gaps = 33/371 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +   E ++AL ++G    H   R +Q+ +  +     D    SD+    R  L    
Sbjct: 49  LADLTSAERKKALSELG----HQGFRAAQVSQHYFGHLADDPAQWSDVPAAKREEL---A 101

Query: 69  SIIYPEI---VDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            I+ P +   + E+ + +GT RK L R       G   +E+V +  + R T+CVSSQ GC
Sbjct: 102 GILTPRLLTPIREQTADNGTTRKTLWRL----FDG-ATVESVLMRYRDRTTMCVSSQAGC 156

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLL-ARSLL-GDFPGCEDIEGMVIPSVGRKISNI 182
            + C FC TG   L RN++  EI+ QV+  AR++  G+ PG              ++SN+
Sbjct: 157 GMNCPFCATGQAGLTRNMSTGEIVEQVVAGARTMARGEVPGGPG-----------RVSNV 205

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEPL N+  V  ++   ++ +  GL  S R IT+ST G VP I ++  E I V L
Sbjct: 206 VFMGMGEPLANYKAVIGAVRRLTEPVPDGLGLSARHITVSTVGLVPAIEKLTAEAIPVTL 265

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ LVP+N ++ +  ++DA   Y  ++  RR++ EY ++K IND    A
Sbjct: 266 AVSLHAPDDELRDTLVPVNTRWNVSEVLDAAWRYASVTK-RRVSIEYALIKDINDQAWRA 324

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++L+     +NLIP NP PG ++  S  +D   F   ++  G    +R  RG DI 
Sbjct: 325 DRLGRMLRNKLVHVNLIPLNPTPGSKWTASRPQDEAEFVRRLQEWGVPVTVRDTRGRDID 384

Query: 360 AACGQLKSLSK 370
            ACGQL +  K
Sbjct: 385 GACGQLAAAVK 395


>gi|154497983|ref|ZP_02036361.1| hypothetical protein BACCAP_01963 [Bacteroides capillosus ATCC
           29799]
 gi|150272973|gb|EDN00130.1| hypothetical protein BACCAP_01963 [Bacteroides capillosus ATCC
           29799]
          Length = 340

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 123/358 (34%), Positives = 192/358 (53%), Gaps = 34/358 (9%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M + E+ +   ++G P      R  Q+++W++ RG   F  M+++S+ +R  L+    I 
Sbjct: 7   MNQAEMADYFRELGEPA----FRAKQVFQWLH-RGAVSFDDMTNLSKGLREKLSGSCYIT 61

Query: 72  YPEIVDEKISC-DGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
            P +  +++S  DGT K+L +     CI      ETV +      T+C+SSQVGC + C+
Sbjct: 62  APAVERKQVSAQDGTIKYLWKLRDGNCI------ETVLMRYHHGNTVCISSQVGCRMGCA 115

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +     VRNLT  E+L QVL  +   G            +P     ISNIV+MG+GE
Sbjct: 116 FCASTLGGKVRNLTPSEMLDQVLFTQLDSG------------VP-----ISNIVLMGIGE 158

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSN 248
           PL NFD V + L + +   GL+   R I+LST G V  I ++ +  + + L++SLHA  +
Sbjct: 159 PLDNFDTVMRFLELVNHPDGLNIGMRHISLSTCGLVEKIDKLADLRLQLTLSVSLHAPDD 218

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           + R+ ++P+N+   +E L  +CR Y      RRI++EY M+ G+NDS   A  L K LKG
Sbjct: 219 ETRSRIMPVNKAVGVERLFRSCRQYFE-KTGRRISYEYAMIDGVNDSDWQADLLAKHLKG 277

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            P  +NLIP N     E      + +  F + +++ G +  +R   G DI A+CGQL+
Sbjct: 278 TPGHVNLIPLNEVK--ESPLKPSRRVEAFQKRLEQHGITVTVRRKLGGDIDASCGQLR 333


>gi|323453959|gb|EGB09830.1| hypothetical protein AURANDRAFT_12530 [Aureococcus anophagefferens]
          Length = 323

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 180/345 (52%), Gaps = 34/345 (9%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD---EKISC-DGTRK 87
           + R  QI +WIY +G+ DF  MS++ ++ R  L    + +   I     E++S  DGT K
Sbjct: 2   KFRAKQIHEWIYDKGVHDFDAMSNLPKKFRDDLKARGATVGGTIAKLRVEQVSQRDGTIK 61

Query: 88  WLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
               F    +     +E+V +P E  R T C+SSQ GC + C+FC TG   L R+LTA E
Sbjct: 62  RAYEFRDGSV-----VESVLMPYEDGRRTACISSQAGCGMGCTFCATGQMGLTRHLTAAE 116

Query: 147 ILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           I  Q    +R L                + G ++SN+V MGMGEPL N+ NV  +    +
Sbjct: 117 IFEQAARFSREL---------------SARGERLSNVVFMGMGEPLANYKNVMAAARRIN 161

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264
           D +G+    R IT+ST G    I ++ E+ + V LA+SLH  ++  R+ ++P+N +Y LE
Sbjct: 162 DELGV--GARHITISTVGLARGIGKLAEDPLQVTLAVSLHQATDAARSAIMPVNDRYDLE 219

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GI-PAKINLIPFNPW 321
            L+ A R Y   +  RR+TFE+  + G ND    A  L  +LK  GI  A +N+IP NP 
Sbjct: 220 TLLGAVRDYQAATR-RRVTFEWAAIAGENDDVDAARTLGALLKKHGIRDAHVNVIPLNPT 278

Query: 322 PGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAACGQL 365
            G     +    +  F + ++   G S+  R  RG+DI A CGQL
Sbjct: 279 KGYGGKRAKNGAVDRFCKTLEAEFGVSATPRVRRGIDIDAGCGQL 323


>gi|312622709|ref|YP_004024322.1| radical sam enzyme, cfr family [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203176|gb|ADQ46503.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 341

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 180/336 (53%), Gaps = 27/336 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLLR 91
            R +QI++W+Y +   D    +++  E+R  +   F +   +I+  +   DG   K+L  
Sbjct: 25  FRATQIFEWLYKKNATDVMQFTNLPLELRKKIYDEFLMNSLQILQHQ--SDGESIKFLFE 82

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
              +       IE+V++P +    +CVS+QVGC + C FC +     VRNLT  E++ Q+
Sbjct: 83  LCDKN-----GIESVFLPYRYGNAVCVSTQVGCKMNCGFCASAIGGFVRNLTPGEMVDQI 137

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           + A +                   G++I+N+V+MG GEP  N +NV K + I +   G +
Sbjct: 138 ISAENF-----------------TGKRITNVVLMGSGEPFDNIENVFKFIEIINSKDGKN 180

Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
              R IT+ST G V  I R+ +    V LAISLHA +N LR+ LVPIN+KYP+E ++ A 
Sbjct: 181 IGARHITISTVGIVEGIYRLCDFPKQVNLAISLHAPNNSLRDKLVPINKKYPIEDIMKAV 240

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
            +Y   +N RR+TFEY ++ G+NDS   A  L +ILKG    +NLIP NP     +    
Sbjct: 241 DYYIQKTN-RRVTFEYALIDGVNDSIDCAQELGRILKGKLVHVNLIPVNPVEEKGFRRPS 299

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           ++ I  F E +K    +  IR   G  I AACGQL+
Sbjct: 300 KEKIKVFFETLKSYQINVTIRRELGSSISAACGQLR 335


>gi|253580148|ref|ZP_04857415.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848667|gb|EES76630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 346

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 184/335 (54%), Gaps = 24/335 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI+ W++   +  +  M+++S+ +R  L ++       +  +    DGT+K+L R 
Sbjct: 24  FRAKQIYSWLHEHLVTSYDEMTNLSKSLREKLKEYPVTALKMVKVQTSRIDGTQKYLFRL 83

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G V IE+V +  K   ++C+SSQVGC + C FC +    L R L   E+L Q+ 
Sbjct: 84  S----DGNV-IESVLMRYKHGNSVCISSQVGCRMGCRFCASTIGGLTRCLLPSEMLDQIY 138

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             ++L G+                 ++SN+V+MG GEPL N++N+ + + I ++  GL  
Sbjct: 139 RIQALTGE-----------------RVSNVVVMGTGEPLDNYENLLRFIHILTEDGGLHI 181

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S+R +T+ST G VP I  + +E + + LA+SLHA ++  R  L+PI  KY ++ +++ACR
Sbjct: 182 SQRNLTVSTCGLVPKIYDLAKEKLQMTLALSLHAPNDVKRRELMPIANKYSMDEVLEACR 241

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +Y      RRITFEY ++ G+NDS  DA  L   ++ +   +NLIP NP     ++ S +
Sbjct: 242 YYFK-ETGRRITFEYSLVAGVNDSDEDARELSGRIRDMNCHVNLIPVNPIKERSFVRSTR 300

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +  F   +++ G +  IR   G DI  ACGQL+
Sbjct: 301 QAVENFKIKLEKCGINVTIRREMGSDIDGACGQLR 335


>gi|326790877|ref|YP_004308698.1| radical SAM protein [Clostridium lentocellum DSM 5427]
 gi|326541641|gb|ADZ83500.1| radical SAM enzyme, Cfr family [Clostridium lentocellum DSM 5427]
          Length = 345

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 186/353 (52%), Gaps = 29/353 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           ELEE +L  G      + R  Q+++W + + + D+  M+++  ++R  L +++ I    I
Sbjct: 11  ELEEIILAYG----ESKFRAKQLFEWFHKKMVWDYDEMNNLPLKLRDKLKENYPIQSLRI 66

Query: 76  VDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
           V++  S  DGT K+L       I     IE+V +  K   ++C+SSQVGC + C FC + 
Sbjct: 67  VEKLCSEIDGTIKYLFELSDSHI-----IESVLMRYKHGNSVCISSQVGCRMGCKFCAST 121

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
            +  VRNL   E++ Q+                   +      ++SNIV+MG GEPL   
Sbjct: 122 VEGRVRNLLPAEMVGQIY-----------------AISKDTNERVSNIVIMGSGEPLEEL 164

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
               + + + +   G +  +R IT+ST G VP I  + EE + + LA+SLHA +++ R  
Sbjct: 165 GVTLRFVELINHPSGQNIGQRHITVSTCGLVPEIKALAEEKLQINLALSLHATTDERRQA 224

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           ++PI RKY LE ++ AC ++   +N RR+TFEY +++G ND   DA  L  +LKG+   +
Sbjct: 225 IMPIARKYSLEEVLAACHYFIEKTN-RRVTFEYALIEGENDKEEDARRLGGLLKGMLCHV 283

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           NLIP N      Y  S    I  F   +++ G  + +R   G DI AACGQL+
Sbjct: 284 NLIPVNQIDERSYKSSKASSIERFKGVLEQYGVPTTLRRTLGADIDAACGQLR 336


>gi|296123027|ref|YP_003630805.1| radical SAM protein [Planctomyces limnophilus DSM 3776]
 gi|296015367|gb|ADG68606.1| radical SAM enzyme, Cfr family [Planctomyces limnophilus DSM 3776]
          Length = 408

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 176/336 (52%), Gaps = 26/336 (7%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  QI + I+      F  M+++  ++R LL   F+++  E+V  +I+ D T K LL+  
Sbjct: 79  RAGQIQQQIFPNRATQFGEMTNLPAKLRELLAATFTLLPSEVVAHQIAKDRTEKLLLQLH 138

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              +     +E V + E  R T+C+S+QVGC + C FC +G   L RNLT  EIL QVL 
Sbjct: 139 DGSL-----VECVLMREDDRRTICISTQVGCGMGCVFCASGLLGLKRNLTTGEILEQVLR 193

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
              LL   P  E            K++N+V+MGMGEPL N  N+  +L   +   GL   
Sbjct: 194 LDRLL---PADE------------KLTNVVVMGMGEPLANLKNLLPALDRLTADDGLGLG 238

Query: 214 KRRITLSTSGF---VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            RRIT+ST G    +  +A+ G +    LA+SLHA   +LR  LVP+N+   +E +++A 
Sbjct: 239 ARRITVSTVGLPEKIRELAQTGHQFN--LAVSLHAPEAELRTKLVPVNKNIGIEAVLEAA 296

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
             Y  ++  RR+++EYV+L GIND P  A  L  +LK   A +NLIP N      +    
Sbjct: 297 DDYFAIT-GRRVSYEYVLLGGINDLPEHARQLGHLLKSRIAHVNLIPMNGVKELPFAEPS 355

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
                 F   ++  G    +R  +G DI AACGQL+
Sbjct: 356 APQTGEFVAILESFGVPVTVRKRKGADIDAACGQLR 391


>gi|328885356|emb|CCA58595.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
           venezuelae ATCC 10712]
          Length = 368

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 184/369 (49%), Gaps = 29/369 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +   E +EA+  IG        R  Q+    + R   D    +DI    R  L    
Sbjct: 22  LADLTPAERKEAVAAIG----EKPFRAKQLSTHYFARYAHDPAEWTDIPAASREKLAGE- 76

Query: 69  SIIYPEI--VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             + P++  V   ISCD   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 77  --LLPDLMSVVRHISCDDDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++     L D           +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y    + RRI+ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRISIEYALIRDINDQAWRGDL 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F E I R G    +R  RG +I  A
Sbjct: 300 LGRLLKGRRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIARHGVPVTVRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAAAER 368


>gi|302872121|ref|YP_003840757.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574980|gb|ADL42771.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 344

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 123/354 (34%), Positives = 189/354 (53%), Gaps = 31/354 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +EL++ L  IG        R SQI++W+Y +   D    +++  E+R  +   F I   +
Sbjct: 11  DELKKWLENIG----EKPFRASQIFEWLYKKNATDVMQFTNLPLELREKIGDEFLINSLQ 66

Query: 75  IVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           I+  +   DG   K+L       +G    IE+V++P +    +CVS+QVGC + C FC +
Sbjct: 67  ILQHQ--SDGESIKFLFE-----LGDKNGIESVFLPYRYGNAICVSTQVGCRMNCRFCAS 119

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
                VRNL+A E++ Q++             ++E       G++I+N+V+MG GEP  N
Sbjct: 120 AIGGFVRNLSAGEMVDQII-------------NVENFT----GKRITNVVLMGSGEPFDN 162

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252
            +NV K + I +   G +   R IT+ST G    I R+ +    V LAISLHA +N LR+
Sbjct: 163 IENVFKFIEIINSKEGKNIGARHITISTVGIAEGIYRLCDFPKQVNLAISLHAPNNRLRD 222

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            LVP+N+KYP+E ++ A  +Y   +N RR+TFEY ++ G+NDS   A  L ++LKG    
Sbjct: 223 KLVPMNKKYPVEDIMKAVDYYIQKTN-RRVTFEYALIDGVNDSIECAEELGQMLKGKLVH 281

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +NLIP NP     +    ++ I  F E ++       IR   G  I AACGQL+
Sbjct: 282 VNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAACGQLR 335


>gi|297588340|ref|ZP_06946983.1| cfr family radical SAM enzyme [Finegoldia magna ATCC 53516]
 gi|297573713|gb|EFH92434.1| cfr family radical SAM enzyme [Finegoldia magna ATCC 53516]
          Length = 349

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 197/369 (53%), Gaps = 35/369 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  M  +EL+E  +  G        R  Q ++ I+   I D + M++ S ++R  L+ + 
Sbjct: 7   LENMTVDELKEFFVNNG----EKSFRALQYFQAIHKNRIFDPEMMTNFSNDLRKKLDNYN 62

Query: 69  SIIYPEIV---DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            I    I+   D K+  D T+K+L+      I     +ETV++  K+  ++C+S+Q+GC 
Sbjct: 63  DIKNCSIIKRIDSKL--DNTKKYLIELSDGNI-----VETVFMEYKTHTSICLSTQIGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +  +  VRNL   E+  Q+ L  +                  +G +I+N+V+M
Sbjct: 116 MGCKFCASTKKSFVRNLQPYEMCAQIYLVEN-----------------DLGIRINNMVLM 158

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
           G+GEPL N+DNV + + + S+  G   S R ITLST G V  I ++  E+IG+ + ISLH
Sbjct: 159 GIGEPLDNYDNVVRFIDLISNKEGQDMSIRNITLSTCGLVDKIIKLADEDIGINITISLH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
              ++ RN L+PI  KY +E ++DAC +Y   +  RRI FEY ++  +NDS +    L+ 
Sbjct: 219 NPFDNERNQLMPIGNKYSIEEILDACDYYFDKT-KRRIGFEYTVIGNVNDSKKYMDKLVG 277

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK     +NLI  NP         D+  ++ F   + ++  ++ IR  +G+DI  ACGQ
Sbjct: 278 LLKNRNCLLNLITLNPIEEFNQKSPDRNKMMEFMNYMNKNNVNTTIRRKQGIDIDGACGQ 337

Query: 365 LK--SLSKR 371
           L+  +++KR
Sbjct: 338 LRINNMTKR 346


>gi|326333653|ref|ZP_08199890.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1]
 gi|325948559|gb|EGD40662.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1]
          Length = 395

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 190/364 (52%), Gaps = 35/364 (9%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYPEIV 76
           ++A  + G+P      R  Q+    + R + D   M+D+    R  L+N     +   I 
Sbjct: 53  QDAAKEAGLPG----FRAKQLSVHYFERLVDDPAKMTDLPASQREELVNTFLPDLMTPIR 108

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
            ++     TRK L +     +     +E+V +    R T+C+SSQ GC + C FC TG  
Sbjct: 109 QQEADKGTTRKTLWKLFDGAL-----VESVLMRYTDRATVCISSQAGCGMACPFCATGQG 163

Query: 137 KLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
            L RN++  EI+ QV++A   +  G+ PG              ++SN+V MGMGEP+ N+
Sbjct: 164 GLERNMSTAEIVHQVVVAARQMASGEIPGGPG-----------RLSNVVFMGMGEPMANY 212

Query: 195 D----NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
                 V++  S A + +GL  S R +T+ST G VP I ++ EE I V LA+SLHA  ++
Sbjct: 213 KALMGAVRRLTSPAPEGLGL--SARHVTVSTVGLVPRIKQLTEEGIPVTLALSLHAPDDE 270

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           LRN LVPIN ++ +   ++A  +Y  ++  RR++ EY M++GIND    A  L  +L G 
Sbjct: 271 LRNELVPINTRFSVAETVEAAWNYARVTK-RRVSIEYAMMRGINDQAWRADLLADVLNGY 329

Query: 310 P----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                  +NLIP NP PG ++  SD  D   F   ++  G S+ +R  RG +I  ACGQL
Sbjct: 330 GDWGWVHVNLIPLNPTPGSKWTASDPADEREFVRRLEAKGISTTVRDTRGREIDGACGQL 389

Query: 366 KSLS 369
            + S
Sbjct: 390 AAQS 393


>gi|302522180|ref|ZP_07274522.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           SPB78]
 gi|302431075|gb|EFL02891.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           SPB78]
          Length = 372

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 127/362 (35%), Positives = 185/362 (51%), Gaps = 29/362 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E +EA+  IG        R  Q+ +  + R  +D    +DI    R  L +    + PE+
Sbjct: 33  ERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE---ALLPEL 85

Query: 76  --VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
             V   ISCD   TRK L R       G + +E+V +    R T+C+SSQ GC + C FC
Sbjct: 86  MSVVRHISCDDDTTRKTLWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFC 140

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   L RNL+  EI+ Q++     L D           IP    ++SNIV MGMGEPL
Sbjct: 141 ATGQAGLDRNLSTAEIVHQIVEGMRALRDGE---------IPGGPARLSNIVFMGMGEPL 191

Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
            N++ V  ++   +D    GL  S+R IT+ST G VP I R  +E     LA+SLHA  +
Sbjct: 192 ANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAVSLHAPDD 251

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           +LR+ LVP+N ++ +  ++DA   Y    + RR++ EY +++ IND       L ++LK 
Sbjct: 252 ELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRVSIEYALIRDINDQAWRGDLLGRLLKN 310

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
               +NLIP NP PG ++  S  +D   F + I   G    +R  RG +I  ACGQL + 
Sbjct: 311 KRVHVNLIPLNPTPGSKWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGACGQLAAA 370

Query: 369 SK 370
            +
Sbjct: 371 ER 372


>gi|257055048|ref|YP_003132880.1| ribosomal RNA large subunit methyltransferase N [Saccharomonospora
           viridis DSM 43017]
 gi|256584920|gb|ACU96053.1| radical SAM enzyme, Cfr family [Saccharomonospora viridis DSM
           43017]
          Length = 370

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 127/375 (33%), Positives = 197/375 (52%), Gaps = 29/375 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI-SQEVRH 62
           L +  L  +   E  EA++ +G        R  Q+    + R   D + M+DI +   R 
Sbjct: 12  LPRRHLADLTVTERAEAVVALG----EKPFRAKQLSHHYFSRLTVDPEAMTDIPAASRRR 67

Query: 63  LLNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           L+++    +  ++    + CDG  TRK L R     +     +E+V +    R TLC+SS
Sbjct: 68  LVDELMPPLLTQV--RAVDCDGGSTRKTLWRAHDGTL-----VESVLMRYPDRATLCISS 120

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD--FPGCEDIEGMVIPSVGRK 178
           Q GC + C FC TG   L RNL+  EI+ QV  A +++ D   PG +       P  GR 
Sbjct: 121 QAGCGMACPFCATGQGGLTRNLSTAEIVDQVRAAAAVMRDGLMPGPDG-----APKPGR- 174

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-I 235
           +SNIV MGMGEPL N+  V  ++   +D    GL  S+R +T+ST G  P I ++ +E +
Sbjct: 175 LSNIVFMGMGEPLANYKRVLAAVRRITDPPPAGLGISQRSVTVSTVGLAPAIRKLADEGL 234

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
            V LA+SLH   ++LR+ LVP+N ++ ++ ++ A R+Y   +  RR++ EY +++ IND 
Sbjct: 235 QVRLAVSLHTPDDELRDELVPVNNRWSVDEVLRAARYYADRTG-RRVSIEYALIRDINDQ 293

Query: 296 PRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           P  A  L K L+   G    +N+IP NP PG ++  S +     F   +   G +  +R 
Sbjct: 294 PWRADLLAKRLREHLGQLVHVNVIPLNPTPGSKWDASPKPVEREFVRRVNAGGVACTVRD 353

Query: 353 PRGLDILAACGQLKS 367
            RG +I AACGQL +
Sbjct: 354 TRGQEIAAACGQLAA 368


>gi|239928666|ref|ZP_04685619.1| hypothetical protein SghaA1_10605 [Streptomyces ghanaensis ATCC
           14672]
 gi|291436989|ref|ZP_06576379.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339884|gb|EFE66840.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 368

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 123/342 (35%), Positives = 178/342 (52%), Gaps = 25/342 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VDEKISCD--GTRKW 88
            R  Q+ +  + R   D +  +DI    R  L +    + PE+  V   +S D   TRK 
Sbjct: 42  FRAKQLSQHYFARYAHDPEQWTDIPAGSRARLRE---ALLPELMTVVRHLSTDQGTTRKT 98

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L +       G + +E+V +    R T+C+SSQ GC + C FC TG   L RNL+  EI+
Sbjct: 99  LWKL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIV 153

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q++          G   +    +P    ++SNIV MGMGEPL N++ V  ++   +D  
Sbjct: 154 HQIV---------DGMRALRDGEVPGGPTRLSNIVFMGMGEPLANYNRVVGAIRRLTDPE 204

Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             GL  S+R IT+ST G VP I R  +E     LAISLHA  ++LR+ LVP+N ++ +  
Sbjct: 205 PDGLGLSQRGITVSTVGLVPAIHRFSDEGFKCRLAISLHAPDDELRDTLVPVNTRWKVRE 264

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           ++DA   Y   S  RR++ EY +++ IND       L ++LKG P  +NLIP NP PG +
Sbjct: 265 VLDAGFAYAARS-GRRLSIEYALIRDINDQAWRGDRLGRLLKGRPVHVNLIPLNPTPGSQ 323

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +  S  +D   F E I   G    IR  RG +I  ACGQL +
Sbjct: 324 WTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGACGQLAA 365


>gi|319441379|ref|ZP_07990535.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
           variabile DSM 44702]
          Length = 370

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 196/369 (53%), Gaps = 32/369 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +  +E++ A+   G+P      R +QI +  Y R   D   M+D+ + +R  +    
Sbjct: 21  LADLTDDEVKAAVKDAGLPG----FRANQIARQYYGRLEGDPMAMTDLPENLRSTVK--- 73

Query: 69  SIIYPEIVD--EKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             ++P ++D    ISCD   TRK L +     +     +E+V +    R TLC+SSQ GC
Sbjct: 74  DTLFPTLMDPVRHISCDEGQTRKTLWKLHDSTL-----LESVLMRYPDRATLCISSQAGC 128

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ QV  A   + D     D+EG      GR +SNIV 
Sbjct: 129 GMACPFCATGQGGLDRNLSTGEIVEQVRAAARAMRDG----DVEG----GEGR-LSNIVF 179

Query: 185 MGMGEPLCNFDNVKKSLS-IASDS-MGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           MGMGEPL N+  V  ++  I S S  G   S+R IT+ST G  P I ++  E++ + LA+
Sbjct: 180 MGMGEPLANYKRVVAAIKRITSPSPEGFGISQRNITVSTVGLAPAIRKLADEDMHMRLAV 239

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH   ++LR+ LVP+N ++ +E ++DA  +Y   S  RR++ EY ++K +ND P  A  
Sbjct: 240 SLHCPDDELRDTLVPVNNRWSIEEVLDAAAYYAEKS-GRRVSIEYALIKEVNDHPWRADL 298

Query: 302 LIKILKGIPAK---INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L K LK        +NLIP NP PG E+  S +     F   +   G +  +R  RG +I
Sbjct: 299 LGKRLKKKLGNQVHVNLIPLNPTPGSEWDASPKPVQDEFVRRVNEQGVACTVRDTRGQEI 358

Query: 359 LAACGQLKS 367
            AACGQL +
Sbjct: 359 AAACGQLAA 367


>gi|295836269|ref|ZP_06823202.1| cfr family radical SAM enzyme [Streptomyces sp. SPB74]
 gi|197697366|gb|EDY44299.1| cfr family radical SAM enzyme [Streptomyces sp. SPB74]
          Length = 369

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 127/362 (35%), Positives = 184/362 (50%), Gaps = 29/362 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E +EA+  IG        R  Q+ +  + R  +D    +DI    R  L +    + PE+
Sbjct: 30  ERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQEE---LLPEL 82

Query: 76  --VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
             V   ISCD   TRK L R       G + +E+V +    R T+C+SSQ GC + C FC
Sbjct: 83  MSVVRHISCDDDTTRKTLWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFC 137

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   L RNL+  EI+ Q++     L D           IP    ++SNIV MGMGEPL
Sbjct: 138 ATGQAGLDRNLSTAEIVHQIVEGMRALRDGE---------IPGGPARLSNIVFMGMGEPL 188

Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
            N++ V  ++   +D    GL  S+R IT+ST G VP I R  +E     LA+SLHA  +
Sbjct: 189 ANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAVSLHAPDD 248

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           +LR+ LVP+N ++ +  ++DA   Y    + RR++ EY +++ IND       L ++LK 
Sbjct: 249 ELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRVSIEYALIRDINDQAWRGDLLGRLLKN 307

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
               +NLIP NP PG  +  S  +D   F + I   G    +R  RG +I  ACGQL + 
Sbjct: 308 KRVHVNLIPLNPTPGSRWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGACGQLAAA 367

Query: 369 SK 370
            +
Sbjct: 368 ER 369


>gi|318056586|ref|ZP_07975309.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           SA3_actG]
 gi|318075677|ref|ZP_07983009.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           SA3_actF]
          Length = 369

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 127/362 (35%), Positives = 185/362 (51%), Gaps = 29/362 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E +EA+  IG        R  Q+ +  + R  +D    +DI    R  L +    + PE+
Sbjct: 30  ERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE---ALLPEL 82

Query: 76  --VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
             V   ISCD   TRK L R       G + +E+V +    R T+C+SSQ GC + C FC
Sbjct: 83  MSVVRHISCDDDTTRKTLWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFC 137

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   L RNL+  EI+ Q++     L D           IP    ++SNIV MGMGEPL
Sbjct: 138 ATGQAGLDRNLSTAEIVHQIVEGMRALRDGE---------IPGGPARLSNIVFMGMGEPL 188

Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
            N++ V  ++   +D    GL  S+R IT+ST G VP I R  +E     LA+SLHA  +
Sbjct: 189 ANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAVSLHAPDD 248

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           +LR+ LVP+N ++ +  ++DA   Y    + RR++ EY +++ IND       L ++LK 
Sbjct: 249 ELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRVSIEYALIRDINDQAWRGDLLGRLLKN 307

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
               +NLIP NP PG ++  S  +D   F + I   G    +R  RG +I  ACGQL + 
Sbjct: 308 KRVHVNLIPLNPTPGSKWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGACGQLAAA 367

Query: 369 SK 370
            +
Sbjct: 368 ER 369


>gi|119025804|ref|YP_909649.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154487364|ref|ZP_02028771.1| hypothetical protein BIFADO_01214 [Bifidobacterium adolescentis
           L2-32]
 gi|205829670|sp|A1A1I4|RLMN_BIFAA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118765388|dbj|BAF39567.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
 gi|154083882|gb|EDN82927.1| hypothetical protein BIFADO_01214 [Bifidobacterium adolescentis
           L2-32]
          Length = 386

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 196/366 (53%), Gaps = 32/366 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  EE      ++G+P    + R  Q+    Y     + +  SD     R    + F   
Sbjct: 39  MSEEERIGKAKELGLP----KFRVKQLANHYYGHFDVNAEEFSDFPAARRSDAAEAF--- 91

Query: 72  YPEIVDE---KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           +PE++ E   +++  GT    ++   R   G + IE+V +   +R TLC+SSQVGC + C
Sbjct: 92  FPELIHEVTRQVADGGT---TIKTLWRLFDGSL-IESVLMRYPTRTTLCISSQVGCGMGC 147

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG   L RN++A EI+ QV +A   + D        G V    GR +SNIV MGMG
Sbjct: 148 PFCATGQLGLTRNMSAGEIVEQVRVAAKAMRD--------GEVAGGSGR-LSNIVFMGMG 198

Query: 189 EPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           EP+ N+ +V  ++   S SM   G   S R IT+ST G VP I ++ EE I V LA+SLH
Sbjct: 199 EPMGNYKSVLSAVRQIS-SMPPEGFGISARNITVSTVGVVPGIRKLAEEGIPVRLAVSLH 257

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A S++LR+ LVP+N+++  + ++DA   Y  L++ RR++ EY +++GIND    A  L K
Sbjct: 258 APSDELRDELVPMNKRFNTKQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHAKLLAK 316

Query: 305 ILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
            L       A +N IP NP  G ++  S  +D   F E +  +G ++ +R  RG DI  A
Sbjct: 317 RLNHYGDDWAHVNPIPLNPIEGSKWTASKPEDERRFLEILHNAGITATLRDTRGQDIDGA 376

Query: 362 CGQLKS 367
           CGQL +
Sbjct: 377 CGQLAA 382


>gi|311744125|ref|ZP_07717931.1| cfr family radical SAM enzyme [Aeromicrobium marinum DSM 15272]
 gi|311313255|gb|EFQ83166.1| cfr family radical SAM enzyme [Aeromicrobium marinum DSM 15272]
          Length = 380

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 193/371 (52%), Gaps = 30/371 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +  EE   A  ++G P      R  Q+    Y R  RD   M+D+    R   ++  
Sbjct: 26  LADLSTEERTAAAAELGEPA----FRVKQVAHHYYARLERDPAAMTDLPAANR---DRIA 78

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQVG 123
           + + P ++D   + +  R   ++   R   G + +E+V +   S     R T+CVSSQ G
Sbjct: 79  AALLPTLLDPVRTMEADRGTTVKNLWRLFDGAL-VESVLMRYLSADGPGRATICVSSQAG 137

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG   L RN++  EI+ QV+ A   +          G V    GR +SN+V
Sbjct: 138 CGMACPFCATGQGGLQRNMSTAEIVDQVVDAAGRMA--------RGEVAGGPGR-LSNVV 188

Query: 184 MMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
            MGMGEP+ N+  V  ++   +A    GL  S R ITLST G VP I ++ EE I V LA
Sbjct: 189 FMGMGEPMANYRAVVGAIRRMVAPAPDGLGLSARNITLSTVGLVPRIRQLTEEGIPVTLA 248

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA  ++LR+ LVPIN ++ ++ ++DA R Y   +  RR++ EY M++ IND    A 
Sbjct: 249 VSLHAPDDELRDTLVPINTRWKVDEVVDAARAYFD-ATGRRVSIEYAMMRDINDQAWRAD 307

Query: 301 NLIKILK---GIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
            L  +L    GI    +NLIP NP PG ++  S ++D   F   ++  G S+ +R  RG 
Sbjct: 308 LLGDVLTARGGIGWVHVNLIPLNPTPGSKWTASRREDEREFVRRLEAKGISTTVRDTRGS 367

Query: 357 DILAACGQLKS 367
           DI  ACGQL +
Sbjct: 368 DIDGACGQLAA 378


>gi|320096228|ref|ZP_08027813.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319976833|gb|EFW08591.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 399

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 186/359 (51%), Gaps = 27/359 (7%)

Query: 21  LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI 80
           L  +G+P      R  Q+ +  + R   D   MSDI   +R  +      + P +V   +
Sbjct: 48  LAGMGLPP----FRADQLSRHYFERFEADPADMSDIPASMRQRVRDS---LLPPLVSGVV 100

Query: 81  SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140
           S        ++   R   G  ++E+V +    R TLCVSSQ GC + C FC TG   L R
Sbjct: 101 SLRADAGRTVKDLWRLYDG-AQVESVLMRYPQRTTLCVSSQAGCGMACPFCATGQMGLTR 159

Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
           NL+  EI+ QV LA++       C D      P+   +++N+V MGMGEPL N+  V  +
Sbjct: 160 NLSTAEIVDQVRLAQA------ACRDGALAGGPT---RLTNVVFMGMGEPLANYKTVVGA 210

Query: 201 LSIASDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPI 257
           L    D +  G   S R +T+ST G VP I R+ GE + V LA+SLHA  +DLR+ L+P+
Sbjct: 211 LHRLVDPVPEGFGMSARNVTVSTVGLVPAIRRLAGEGLPVTLAVSLHAPDDDLRDDLIPV 270

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL----KGIPAKI 313
           N ++ +  L+DA RHY  L   RR++ EY ++K +ND    A  L   L    KG  A +
Sbjct: 271 NSRWKVGELLDAARHY-FLVTGRRVSIEYALIKDMNDQVWRAQLLADELNRRGKGW-AHV 328

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK-SLSKR 371
           N IP NP PG  +  S ++    F   ++ +G  + IR  RG DI  ACGQL  S +KR
Sbjct: 329 NPIPLNPTPGSIWTASTRRSQDAFVATLRDNGVVTSIRDTRGSDIDGACGQLATSAAKR 387


>gi|312793230|ref|YP_004026153.1| radical sam enzyme, cfr family [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180370|gb|ADQ40540.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 344

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 179/336 (53%), Gaps = 27/336 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLLR 91
            R +Q+++W+Y +   D    +++  E+R  +   F I   +I+  K   DG   K+L  
Sbjct: 25  FRATQVFEWLYKKNATDVMQFTNLPLELRKKIEDEFLINSLQIL--KYQSDGESIKFLFE 82

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
               C    VE  +V++P +    +CVS+QVGC + C FC +     VRNL+  E++ Q+
Sbjct: 83  L---CDKNGVE--SVFLPYRYGNAICVSTQVGCKMNCRFCASTIGGFVRNLSPGEMVDQI 137

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           + A +                   G++I+N+V+MG GEP  N +NV K + I +   G +
Sbjct: 138 INAENF-----------------TGKRITNVVLMGSGEPFDNIENVFKFIEIINSKEGKN 180

Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
              R IT+ST G V  I R+ +    V LAISLHA +N LR+ LVPIN+KYP+E ++ A 
Sbjct: 181 IGARHITISTVGIVEGIYRLCDFPKQVNLAISLHAPNNSLRDKLVPINKKYPVEDIMKAV 240

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
            +Y   +N RR+TFEY ++ G+NDS   A  L K+LKG    +NLIP NP     +    
Sbjct: 241 DYYIKRTN-RRVTFEYALIDGVNDSIECAQELGKMLKGKLVHVNLIPVNPVEEKGFRRPS 299

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           ++ I  F E ++       IR   G  I AACGQL+
Sbjct: 300 KEKIKAFFETLRSYQIQVTIRRELGSSISAACGQLR 335


>gi|307824047|ref|ZP_07654274.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
 gi|307734831|gb|EFO05681.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
          Length = 233

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 111/244 (45%), Positives = 144/244 (59%), Gaps = 15/244 (6%)

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           + CSFC+TG Q L RNLT  EI+ Q L A R L  + PG E            +I NIV 
Sbjct: 1   MNCSFCFTGKQGLKRNLTTSEIVGQFLQAWRWLAKNRPGEE------------RILNIVF 48

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MG GEPL NFD VKK+  I     G S   +RIT+ST+G++P + R  +EI GV LA+SL
Sbjct: 49  MGQGEPLHNFDAVKKACEIFLSKHGTSIGVQRITISTAGYIPGLKRWSQEIPGVNLALSL 108

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+   + RN L+PIN KYPL+ ++      P L+  + IT+EY+++K  ND+P DA  L 
Sbjct: 109 HSPFEEKRNELIPINIKYPLDEVLATIDKIP-LNKKQFITYEYILIKDFNDTPDDAEKLG 167

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            IL G  A INLIPFN +PG  Y   D   I  F E +      + IR+ +G D+LAACG
Sbjct: 168 TILAGKSAYINLIPFNSFPGSHYNRPDLDKIEKFKEVLDTFKIPTLIRSAKGDDVLAACG 227

Query: 364 QLKS 367
           QL S
Sbjct: 228 QLNS 231


>gi|227497538|ref|ZP_03927766.1| possible Fe-S-cluster redox protein [Actinomyces urogenitalis DSM
           15434]
 gi|226832992|gb|EEH65375.1| possible Fe-S-cluster redox protein [Actinomyces urogenitalis DSM
           15434]
          Length = 392

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 187/364 (51%), Gaps = 41/364 (11%)

Query: 19  EALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
           +A+LK  G+P      R  Q+ +  + R  RD Q M+D+    R  L      + P+++ 
Sbjct: 43  KAVLKDAGLPA----FRADQLSRHYFTRFTRDAQDMTDLPASQREQLAAE---LLPDLIH 95

Query: 78  E--KISCDGTRK----WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
           E   +  DG R     W L          V +E+V +  K R TLCVSSQ GC + C FC
Sbjct: 96  EVRALRADGGRTIKHLWELH-------DGVRVESVLMRYKDRTTLCVSSQAGCGMACPFC 148

Query: 132 YTGTQKLVRNLTAEEILLQVLLAR--SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
            TG   L RNL+  EI+ QV  A   S  GD  G         P+   ++SN+V MGMGE
Sbjct: 149 ATGQMGLTRNLSTGEIIEQVRHAAQVSERGDLTGG--------PA---RLSNVVFMGMGE 197

Query: 190 PLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           P+ N+ NV  +L    +    G   S R IT+ST G VP I ++  E + V LA+SLHA 
Sbjct: 198 PMINYKNVVAALRRLTSPAPEGFGMSARGITVSTVGLVPLIRKLSTEGMPVTLAVSLHAP 257

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++LR+ L+PIN K+ +  L+DA   Y   +  RR++ EY ++K +ND    A  L   L
Sbjct: 258 DDELRDELIPINSKWKVGELLDAAYDYYS-TTGRRVSIEYALIKDMNDHAWRAQLLADEL 316

Query: 307 KGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
                  A +N IP NP PG  + CS+      F + ++R+G ++ +R  RG DI  ACG
Sbjct: 317 NARGRGWAHVNPIPLNPTPGSIWTCSEPDVQELFVDTLRRAGITTTVRDTRGSDIDGACG 376

Query: 364 QLKS 367
           QL +
Sbjct: 377 QLAT 380


>gi|224283162|ref|ZP_03646484.1| hypothetical protein BbifN4_04969 [Bifidobacterium bifidum NCIMB
           41171]
 gi|313140311|ref|ZP_07802504.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132821|gb|EFR50438.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 396

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 191/368 (51%), Gaps = 24/368 (6%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+ M  +E       +G+P    + R  Q+    + R   + +  +D+    R  + + F
Sbjct: 42  LVDMTPDERVAKAKDLGLP----KFRVKQLANHYFGRLETESEAFTDLPAATRGDIVEAF 97

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
              +P ++DE       +   ++   R   G   IE+V +   +R TLC+SSQVGC + C
Sbjct: 98  ---FPPLIDEVTHQVADQGTTIKTLWRLFDGS-HIESVLMRYPNRTTLCISSQVGCGMGC 153

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG   L RN++  EIL QV +A  ++ D        G V    GR +SNIV MGMG
Sbjct: 154 PFCATGKLGLTRNMSTGEILEQVRVAARMMRD--------GEVAGGPGR-LSNIVFMGMG 204

Query: 189 EPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           EP+ N+ +V  ++    A    G   S R IT+ST G VP I ++  E I V LA+SLHA
Sbjct: 205 EPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIRKLAAEGIPVRLAVSLHA 264

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            S+ LR+ LVP+N+++    ++DA   Y  LS+ RR++ EY +++GIND    A  L K 
Sbjct: 265 PSDALRDELVPMNKRFNTTQVLDAAHDY-FLSSKRRVSIEYALMRGINDQAEHARLLAKR 323

Query: 306 LKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           L       A +N IP NP  G  +  S  +D   F + +  +G ++ +R  RG DI  AC
Sbjct: 324 LNHYGDDWAHVNPIPLNPIEGSRWTASKPEDEQQFLDILHHAGITATLRDTRGSDIDGAC 383

Query: 363 GQLKSLSK 370
           GQL + +K
Sbjct: 384 GQLAAKTK 391


>gi|270284175|ref|ZP_05965684.2| radical SAM enzyme, Cfr family [Bifidobacterium gallicum DSM 20093]
 gi|270277254|gb|EFA23108.1| radical SAM enzyme, Cfr family [Bifidobacterium gallicum DSM 20093]
          Length = 369

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 195/371 (52%), Gaps = 36/371 (9%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           +  EE      ++G+P    + R +Q+ K  Y     +    +D     R    Q F   
Sbjct: 19  LTNEERIAKAKELGLP----KFRVNQLAKHYYDHFDVNAADFTDFPAAHRGQAAQTF--- 71

Query: 72  YPEIVDE---KISCDGTR---KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +P+++ E   +++ DG      W L   +R       IE+V +   +R TLC+SSQVGC 
Sbjct: 72  FPQLITEVMRQVADDGQTIKTLWDLFDGSR-------IESVLMRYPNRATLCISSQVGCG 124

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RN++  EIL QV +A  ++         EG V    GR +SNIV M
Sbjct: 125 MGCPFCATGQLGLTRNMSTGEILEQVRVAARMM--------REGEVAGGPGR-LSNIVFM 175

Query: 186 GMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEP+ N+ +V  ++    A    G   S R IT+ST G VP I ++ +E + V LA+S
Sbjct: 176 GMGEPMGNYKSVMSAVRQISAMPPDGFGISARNITVSTVGVVPGIRKLAQEGLPVRLAVS 235

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA S++LR+ LVP+N+++  + ++DA   Y   SN RR++ EY +++GIND    A  L
Sbjct: 236 LHAPSDELRDKLVPMNKRFNTKQVLDAAHDYYLASN-RRVSIEYALMRGINDQAEHARLL 294

Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K L       A +N IP NP  G ++  S  +D   F + + R+G ++ +R  RG DI 
Sbjct: 295 AKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQQFLDILHRAGITATMRDTRGQDID 354

Query: 360 AACGQLKSLSK 370
            ACGQL +  K
Sbjct: 355 GACGQLAAKVK 365


>gi|312134889|ref|YP_004002227.1| radical sam enzyme, cfr family [Caldicellulosiruptor owensensis OL]
 gi|311774940|gb|ADQ04427.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor owensensis OL]
          Length = 344

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/354 (34%), Positives = 191/354 (53%), Gaps = 31/354 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +EL++ L  IG        R SQI++W+Y +   D    +++  E+R  ++  F I   +
Sbjct: 11  DELKKWLENIG----EKPFRASQIFEWLYKKNATDVMQFTNLPLELREKIDDEFLINSLQ 66

Query: 75  IVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           I++ +   DG   K+L     +   G   IE+V++P +    +CVS+QVGC + C FC +
Sbjct: 67  ILEHQ--SDGKSIKFLFELCDK--NG---IESVFLPYRYGNAICVSTQVGCKMNCRFCAS 119

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
                VRNL+A E++ Q++             ++E       G++I+N+V+MG GEP  N
Sbjct: 120 AIGGFVRNLSAGEMVDQII-------------NVENFT----GKRITNVVLMGSGEPFDN 162

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252
            +NV K + I +   G +   R IT+ST G    I R+ +    V LAISLHA +N LR+
Sbjct: 163 IENVFKFIEIINSKEGKNIGARHITISTVGIAEGIYRLCDFPKQVNLAISLHAPNNRLRD 222

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            LVP+N+KYP+E ++ A  +Y   +N RR+TFEY ++ G+NDS   A  L ++LKG    
Sbjct: 223 KLVPMNKKYPVEDIMKAVDYYIQKTN-RRVTFEYALIDGVNDSIECAEELGQMLKGKLVH 281

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +NLIP NP     +    ++ I  F E ++       IR   G  I AACGQL+
Sbjct: 282 VNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAACGQLR 335


>gi|219118833|ref|XP_002180183.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408440|gb|EEC48374.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 378

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 201/379 (53%), Gaps = 36/379 (9%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  + + ELE  ++  G    H + R  Q++ WI  +G+ D   M+++ + +R  L++ 
Sbjct: 16  NLSTVTQAELEILMVAWG----HPKYRAQQVYNWIRQQGVTDVALMTNLPKTLRAQLSEF 71

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSL 126
                 EI  E +S DGT    ++   RC  G + IE+V +P K  R T C+SSQ GC+ 
Sbjct: 72  SKPRSLEIAAEMVSKDGT----IKRAYRCADGQM-IESVLMPYKDGRYTACISSQAGCAQ 126

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG---------DFPGCEDIEGMVIPSVGR 177
            C FC TG     R LTA+EI  QV +  + L          D  G E   G        
Sbjct: 127 GCVFCATGQMGFARQLTADEIFEQVAIFANELQQQKDQQQYIDAGGQEIQHGRAT----- 181

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG- 236
           ++SN+V MGMGEPL N+ NV K+++  ++ +G+    R+IT+ST G VPNI ++  +   
Sbjct: 182 RLSNVVFMGMGEPLANYRNVVKAVNRITNDLGI--GARKITVSTVGIVPNIVKLTTDPDM 239

Query: 237 --VMLAISLHAVSNDLRNILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
             + LA+SLH  S+  R+ L+P NR+Y  L+ L+ A R Y   +  RRIT E+ +++G N
Sbjct: 240 PPIRLAVSLHCASDKERSDLLPANRRYGGLDELMPALRDYIE-TTGRRITLEWALIQGEN 298

Query: 294 DSPRDALNLIKI-----LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348
           D+   A  L  +     L+     +N+IP NP  G E   + ++++  F + ++  G + 
Sbjct: 299 DNADSARTLASLVQRYGLRRDMVHVNVIPLNPTGGFEGTPTQRQNVNVFVKTLEEHGIAC 358

Query: 349 PIRTPRGLDILAACGQLKS 367
             R  RG+DI A CGQL S
Sbjct: 359 TPRVRRGIDIDAGCGQLTS 377


>gi|302558123|ref|ZP_07310465.1| cfr family radical SAM enzyme [Streptomyces griseoflavus Tu4000]
 gi|302475741|gb|EFL38834.1| cfr family radical SAM enzyme [Streptomyces griseoflavus Tu4000]
          Length = 368

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 186/366 (50%), Gaps = 29/366 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +   E +EA++  G        R  Q+ +  + R   D +  +DI    R  L +  
Sbjct: 22  LADLTPAERKEAVVAAG----EKPFRAKQLSQHYFARYAHDPELWTDIPAGSRGKLQE-- 75

Query: 69  SIIYPEI--VDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             + PE+  V   +S D   TRK L +     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  -ALLPELMTVVRHLSTDQGTTRKTLWKLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++     L D           +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP + R  +E     LAI
Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAVHRFSDEGFKCRLAI 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S  RR++ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFEYAARS-GRRLSIEYALIRDINDQAWRGDR 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG P  +NLIP NP PG ++  S  +D   F E I   G    IR  RG +I  A
Sbjct: 300 LGRMLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGA 359

Query: 362 CGQLKS 367
           CGQL +
Sbjct: 360 CGQLAA 365


>gi|326776285|ref|ZP_08235550.1| radical SAM enzyme, Cfr family [Streptomyces cf. griseus XylebKG-1]
 gi|326656618|gb|EGE41464.1| radical SAM enzyme, Cfr family [Streptomyces cf. griseus XylebKG-1]
          Length = 368

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 178/345 (51%), Gaps = 25/345 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VDEKISCDG--TRKW 88
            R  Q+ +  + R   D    ++I    R  L +    ++P++  V   ISCD   TRK 
Sbjct: 42  FRAQQLSQHYFARYAHDPAEWTNIPAGSREKLAE---ALFPDLMSVMRHISCDDDTTRKT 98

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L +     +     +E+V +    R T+C+SSQ GC + C FC TG   L RNL+  EI+
Sbjct: 99  LWKLHDGTL-----VESVLMRYPDRVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIV 153

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q++     L D           +P    ++SNIV MGMGEPL N++ V  ++   +D  
Sbjct: 154 HQIVDGMRALRDGE---------VPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPE 204

Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             GL  S+R IT+ST G VP + R  +E     LA+SLHA  ++LR+ LVP+N ++ +  
Sbjct: 205 PDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWNVRE 264

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           ++DA   Y   S  RRI+ EY +++ IND       L ++LKG    +NLIP NP PG +
Sbjct: 265 VLDAAWEYADKS-GRRISIEYALIRDINDQAWRGDRLGRLLKGKRVHVNLIPLNPTPGSK 323

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           +  S  +D   F E I   G    +R  RG +I  ACGQL +  +
Sbjct: 324 WTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGACGQLAAAER 368


>gi|21223996|ref|NP_629775.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           coelicolor A3(2)]
 gi|256784928|ref|ZP_05523359.1| hypothetical protein SlivT_10600 [Streptomyces lividans TK24]
 gi|289768821|ref|ZP_06528199.1| cfr family radical SAM enzyme [Streptomyces lividans TK24]
 gi|81556653|sp|O86754|RLMN_STRCO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|3319741|emb|CAA19907.1| conserved hypothetical protein SC6A9.22c [Streptomyces coelicolor
           A3(2)]
 gi|289699020|gb|EFD66449.1| cfr family radical SAM enzyme [Streptomyces lividans TK24]
          Length = 368

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 185/366 (50%), Gaps = 29/366 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +   E +EA+  IG        R  Q+ +  + R     +  +DI    R  L +  
Sbjct: 22  LADLTPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHAPEQWTDIPAGSREGLRE-- 75

Query: 69  SIIYPEI--VDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             + PE+  V   +S D   TRK L +     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  -ALLPELMTVVRHLSTDQGTTRKTLWKLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++     L D           +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP I R  GE     LAI
Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFTGEGFKCRLAI 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S  RR++ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFEYAAKS-GRRLSIEYALIRDINDQAWRGDR 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++L+G P  +NLIP NP PG ++  S  +D   F E I   G    IR  RG +I  A
Sbjct: 300 LGRLLRGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGA 359

Query: 362 CGQLKS 367
           CGQL +
Sbjct: 360 CGQLAA 365


>gi|312876958|ref|ZP_07736933.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796273|gb|EFR12627.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 344

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 178/336 (52%), Gaps = 27/336 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLLR 91
            R +Q+++W+Y +   D    +++  E+R  +   F I    I+  K   DG   K+L  
Sbjct: 25  FRATQVFEWLYKKNATDVMQFTNLPLELRKKIEDEFLINSLHIL--KYQSDGESIKFLFE 82

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
               C    VE  +V++P +    +CVS+QVGC + C FC +     VRNL+  E++ Q+
Sbjct: 83  L---CDKNGVE--SVFLPYRYGNAICVSTQVGCKMNCRFCASTIGGFVRNLSPGEMVDQI 137

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           + A +                   G++I+N+V+MG GEP  N +NV K + I +   G +
Sbjct: 138 INAENF-----------------TGKRITNVVLMGSGEPFDNIENVFKFIEIINSKEGKN 180

Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
              R IT+ST G V  I R+ +    V LAISLHA +N LR+ LVPIN+KYP+E ++ A 
Sbjct: 181 IGARHITISTVGIVEGIYRLCDFPKQVNLAISLHAPNNSLRDKLVPINKKYPVEDIMKAV 240

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
            +Y   +N RR+TFEY ++ G+NDS   A  L K+LKG    +NLIP NP     +    
Sbjct: 241 DYYIKRTN-RRVTFEYALIDGVNDSIECAQELGKMLKGKLVHVNLIPVNPVEEKGFRRPS 299

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           ++ I  F E ++       IR   G  I AACGQL+
Sbjct: 300 KEKIKAFFETLRSYQIQVTIRRELGSSISAACGQLR 335


>gi|303228552|ref|ZP_07315380.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516799|gb|EFL58713.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 348

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 181/343 (52%), Gaps = 26/343 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD-GTRKWLL 90
           + R  Q+  +IY R I  FQ M+   + +R  L+ +  +  P+++ + +S D  T+K LL
Sbjct: 23  KFRAKQLIDYIYHRHIFVFQDMTQFPKTLRDWLDSNCIVSIPKVITQSVSPDEKTQKLLL 82

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
                       IE V + +    ++CVSSQVGC++ C FC +    L R+L+  EI+ Q
Sbjct: 83  ELADHS-----RIEAVLMEQHYGNSVCVSSQVGCAMGCVFCASTQGGLFRDLSVSEIVGQ 137

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           V+L  +L       EDI  +V+            MG GEPL N+DNV ++L +  D M  
Sbjct: 138 VVLFSAL-----KQEDIHSLVV------------MGAGEPLQNYDNVLQALKLIHDPMTF 180

Query: 211 SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S R++T+ST G+VPNI ++  E++ + LA+SLHA +++ R  ++P+  +Y L+ ++DA
Sbjct: 181 DISYRKMTISTCGWVPNIYKLADEDLPITLALSLHATTDETRRKIMPVGSRYKLDEVLDA 240

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGCEYLC 328
            ++Y      RRITFEY+++  IN S  +A  L  I K  P   +NLIP N         
Sbjct: 241 VKYYYE-KTQRRITFEYILIDSINVSLEEAHELGNIGKAFPNCHVNLIPVNGNEHINLYK 299

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
              K +  F + +   G S  IR   G  I AACGQLK    R
Sbjct: 300 PSSKHMNIFKDIVASYGVSVTIRKEMGDAIQAACGQLKVAHGR 342


>gi|291299709|ref|YP_003510987.1| radical SAM enzyme, Cfr family [Stackebrandtia nassauensis DSM
           44728]
 gi|290568929|gb|ADD41894.1| radical SAM enzyme, Cfr family [Stackebrandtia nassauensis DSM
           44728]
          Length = 388

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 189/364 (51%), Gaps = 27/364 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSIIYP 73
           EE  EA+ ++  P      R +Q+ +  Y R       M+D+    R  + +  F  +  
Sbjct: 28  EERREAVRELDEPA----FRANQLSRQYYTRHETSVSRMTDLPVASRDKIAEALFPALLT 83

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
            I D +     TRK L R     +     +E+V +    R T+CVSSQ GC + C FC T
Sbjct: 84  PIKDTECDDGTTRKTLYRLHDGSL-----VESVLMGYPDRATVCVSSQAGCGMACPFCAT 138

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   L RN++  EI+ QV+ A  L                 +GR +S++V MGMGEPL N
Sbjct: 139 GQAGLTRNMSTAEIVEQVVNAARLAEQA------------KLGR-LSHVVFMGMGEPLAN 185

Query: 194 FDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDL 250
           +  V  +L   +D    GL  S R IT+ST G VP I R+  E++ V LA+SLHA  ++L
Sbjct: 186 YSRVVAALRRVTDPTPGGLGLSARHITVSTVGLVPAIRRLTDEDMSVTLAVSLHAPDDEL 245

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R+ LVP+N ++ +  ++DA  +Y      RR++ EY M++ +ND P  A  L ++LKG  
Sbjct: 246 RDELVPVNSRWKVAEVLDAAWNY-ARRTGRRVSIEYAMIRDVNDQPWRADLLGRLLKGKL 304

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           A +NLIP NP PG ++  S +     F   ++ +G  + +R  RG DI  ACGQL +  +
Sbjct: 305 AHVNLIPLNPTPGSKWDASPKPVEREFVARLRAAGVPTTVRDTRGRDIDGACGQLAASQQ 364

Query: 371 RIPK 374
            + +
Sbjct: 365 DVAQ 368


>gi|297191769|ref|ZP_06909167.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721713|gb|EDY65621.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 368

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 184/369 (49%), Gaps = 29/369 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +   E ++A+  IG        R  Q+ +  + R   D    +DI    R  L    
Sbjct: 22  LADLTPAERKDAVASIG----EKPFRAKQLSQHYFARYAHDPAQWTDIPAAAREKLATE- 76

Query: 69  SIIYPEI--VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             + P++  V   ISCD   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 77  --LLPDLMSVVRHISCDDDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++     L D           +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y    + RRI+ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRISIEYALIRDINDQAWRGDL 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  A
Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAAQER 368


>gi|182435651|ref|YP_001823370.1| hypothetical protein SGR_1858 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|205829903|sp|B1VYT2|RLMN_STRGG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|178464167|dbj|BAG18687.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 368

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 178/345 (51%), Gaps = 25/345 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VDEKISCDG--TRKW 88
            R  Q+ +  + R   D    ++I    R  L +    ++P++  V   ISCD   TRK 
Sbjct: 42  FRAQQLSQHYFARYAHDPAEWTNIPAGSREKLAE---ALFPDLMSVMRHISCDDDTTRKT 98

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L +     +     +E+V +    R T+C+SSQ GC + C FC TG   L RNL+  EI+
Sbjct: 99  LWKLHDGTL-----VESVLMRYPDRVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIV 153

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q++     L D           +P    ++SNIV MGMGEPL N++ V  ++   +D  
Sbjct: 154 HQIVDGMRALRDGE---------VPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPE 204

Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             GL  S+R IT+ST G VP + R  +E     LA+SLHA  ++LR+ LVP+N ++ +  
Sbjct: 205 PDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWNVRE 264

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           ++DA   Y   S  RRI+ EY +++ IND       L ++LKG    +NLIP NP PG +
Sbjct: 265 VLDAAWEYADKS-GRRISIEYALIRDINDQAWRGDRLGRLLKGKRVHVNLIPLNPTPGSK 323

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           +  S  +D   F E +   G    +R  RG +I  ACGQL +  +
Sbjct: 324 WTASRPEDEKAFVEAVAAHGVPVTVRDTRGQEIDGACGQLAAAER 368


>gi|87301290|ref|ZP_01084131.1| hypothetical protein WH5701_15431 [Synechococcus sp. WH 5701]
 gi|87284258|gb|EAQ76211.1| hypothetical protein WH5701_15431 [Synechococcus sp. WH 5701]
          Length = 362

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 180/355 (50%), Gaps = 38/355 (10%)

Query: 25  GIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV------DE 78
            + Q     R  Q+  WIY +G R    +S + +  R  L         + +        
Sbjct: 25  AVSQGQPAFRGRQLHDWIYAKGARRLADISVLPKAWRESLTAEADPAGSDALGRSRELQR 84

Query: 79  KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138
            ++ DGT K LL          + +ETV IP + R T+CVSSQVGC + C FC TG   L
Sbjct: 85  SVASDGTTKLLL-----GTADGLSLETVGIPSRDRLTVCVSSQVGCPMACRFCATGKGGL 139

Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198
            R+L   EI+ QVL  R ++                  R+ S++V MGMGEPL   D+V 
Sbjct: 140 QRSLAVHEIVDQVLCVREVME-----------------RRPSHVVFMGMGEPLLTIDSVL 182

Query: 199 KSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---VMLAISLHAVSNDLR 251
            ++      +G++  +R+IT+ST G    +P++A +  E +G     LA+SLHA    LR
Sbjct: 183 GAIHCLCTDLGMA--QRQITVSTVGVPSTLPSLAELALERLGRAQFTLAVSLHAPDQGLR 240

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             L+P    YPLE L+D CR Y  ++  RR++FEY++L G+ND PR A  L  +L+G  +
Sbjct: 241 EQLIPTAHAYPLEALLDDCRRYVEITG-RRVSFEYILLGGLNDHPRQAAALAALLRGFQS 299

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            +NLIP+NP    ++     + +  F   +     +  +R  RGLD  AACGQL+
Sbjct: 300 HVNLIPYNPIEEEDFQRPSPERVEAFRRALLERHVAVSVRASRGLDEDAACGQLR 354


>gi|284992364|ref|YP_003410918.1| radical SAM enzyme, Cfr family [Geodermatophilus obscurus DSM
           43160]
 gi|284065609|gb|ADB76547.1| radical SAM enzyme, Cfr family [Geodermatophilus obscurus DSM
           43160]
          Length = 395

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 193/371 (52%), Gaps = 34/371 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  + REE   A+ ++G P      R  Q+ +  Y RG+ D   M+D+   VR  L    
Sbjct: 20  LADLTREEARAAVTELGQPA----FRADQLTRHFY-RGVTDPAQMTDLPAAVREELT--- 71

Query: 69  SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             + P ++     +S DG  TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 72  GALLPGLLTPVRTLSADGGRTRKTLWRLHDGAL-----VESVLMRYPDRATVCISSQAGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNI 182
            + C FC TG   L RNL+A EI+ Q + A + +  G+ PG              ++SN+
Sbjct: 127 GMACPFCATGQNGLTRNLSAAEIIGQAVAAAAAMANGEVPGGPG-----------RLSNV 175

Query: 183 VMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V+K+L   +     GL  S+R +T+ST G VP I R+ EE + V L
Sbjct: 176 VFMGMGEPLANYARVRKTLDALVTPAPHGLGLSQRSVTVSTVGVVPAIRRLTEEGLHVTL 235

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ LVPIN ++ +  ++ A   Y      RR + EY +++ +ND P  A
Sbjct: 236 AVSLHAPDDELRDTLVPINTRWKVGEVVAAADAY-AERTGRRYSVEYALIRDVNDQPERA 294

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++L    A +NLIP NP PG ++  S       F   ++  G  + +R  RG DI 
Sbjct: 295 DLLGRLLADRRAHVNLIPLNPTPGSKWDASPLPAQREFVARLRAHGVPTTVRDTRGQDID 354

Query: 360 AACGQLKSLSK 370
            ACGQL +  +
Sbjct: 355 GACGQLAAADR 365


>gi|33241085|ref|NP_876027.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|81663987|sp|Q7VA32|RLMN_PROMA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33238614|gb|AAQ00680.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 348

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/372 (32%), Positives = 194/372 (52%), Gaps = 37/372 (9%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LL 64
           K  L+G+   +LE    ++ +       R  Q+ +W+Y +G+ +   ++ + +  R+ L+
Sbjct: 5   KIQLLGLDLSQLE----RLALDHGESLYRGRQLHQWLYQKGVDNLDDITVLPKAWRNSLI 60

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +  S+     V+  I+ D T K LL       G    IETV IP  +R T+CVSSQ+GC
Sbjct: 61  QKGISVGGLVEVNRFIAGDRTIKLLL-----STGDGEIIETVGIPSGNRLTICVSSQIGC 115

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L R+L   EI+ QV   +      P                 SN+V 
Sbjct: 116 PMGCQFCATGKDGLKRSLKVNEIVAQVFAVKKAFNRSP-----------------SNVVF 158

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVGEE----IGV 237
           MGMGEPL N + V  S+   +  +G+   +RRIT+ST G    +P +A +  +    +  
Sbjct: 159 MGMGEPLLNIEEVLSSICCLNKDLGIG--QRRITVSTVGVKNTLPQLAELALQFLGSVQF 216

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA +  LR  L+P  + YP+++L++ CRHY  L+  RR++FEY++L  +ND   
Sbjct: 217 TLALSLHAPNQKLRESLIPSAQNYPIKLLLEDCRHYLDLT-GRRVSFEYILLGHLNDHIE 275

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L  ++ G  + +NLI +NP  G  +     + +  F + +++ G    +R  RGLD
Sbjct: 276 HAEELADLVGGFQSHVNLIAYNPIDGESFQRPSNQRVNIFIKTLQKRGIVVSLRASRGLD 335

Query: 358 ILAACGQLKSLS 369
             AACGQL+S++
Sbjct: 336 KNAACGQLRSMN 347


>gi|145219757|ref|YP_001130466.1| radical SAM protein [Prosthecochloris vibrioformis DSM 265]
 gi|205829809|sp|A4SEQ5|RLMN_PROVI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145205921|gb|ABP36964.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 373

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 181/346 (52%), Gaps = 34/346 (9%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-----TRKW 88
           R  QI +W++      F+ M+ +S+ +R  L + F+I  PE+     S +G     T K 
Sbjct: 41  RAKQIHEWLFSHRAESFEEMTTLSKALRKALEETFAITPPEVEQHDNSTEGACPGPTEKL 100

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           LLR P   +     IETV IP   R T C+SSQ GC+L CSFC TG+    RNLT  EI 
Sbjct: 101 LLRLPDGAM-----IETVLIPGPGRLTACLSSQAGCALQCSFCATGSLGFKRNLTPGEIT 155

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGR--KISNIVMMGMGEPLCNFDNVKKSL-SIAS 205
            Q     S+L               + GR  KI+NIV MGMGEPL N  NV  ++ ++++
Sbjct: 156 GQANALNSMLA--------------ASGREQKITNIVFMGMGEPLLNTLNVFDAVETLST 201

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPI-NRKYPL 263
                S S+R+IT+ST G +P IA++    +   LA+SLH+   + R  L+P+  R+YPL
Sbjct: 202 RGYTSSISQRKITISTVGIIPEIAKLATSGMKTKLAVSLHSAFQEKRESLMPLAARRYPL 261

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
           + L     HY   +    +T  Y++L+G+ND+  DA  LI+       KINLI +N    
Sbjct: 262 DELQPVLAHY-AKNTGEPVTLVYMLLEGVNDTLEDARQLIRFASRFFCKINLIDYNSIVN 320

Query: 324 CEY--LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             +  +CS+ +D   F + +  +G    +R   G  I AACGQL +
Sbjct: 321 IPFQSVCSETRD--RFRDRLLEAGLQVTLRKSYGTSIHAACGQLAA 364


>gi|310287528|ref|YP_003938786.1| radical SAM enzyme, Cfr family [Bifidobacterium bifidum S17]
 gi|311064441|ref|YP_003971166.1| radical SAM family protein [Bifidobacterium bifidum PRL2010]
 gi|309251464|gb|ADO53212.1| radical SAM enzyme, Cfr family [Bifidobacterium bifidum S17]
 gi|310866760|gb|ADP36129.1| Radical SAM family enzyme [Bifidobacterium bifidum PRL2010]
          Length = 396

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 191/368 (51%), Gaps = 24/368 (6%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+ M  +E       +G+P    + R  Q+    + R   + +  +D+    R  + + F
Sbjct: 42  LVDMTPDERIARAKDLGLP----KFRVKQLANHYFGRLETESEAFTDLPAATRGDIVEAF 97

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
              +P ++DE       +   ++   R   G   IE+V +   +R TLC+SSQVGC + C
Sbjct: 98  ---FPPLIDEVTHQVADQGTTIKTLWRLFDGS-HIESVLMRYPNRTTLCISSQVGCGMGC 153

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG   L RN++  EIL QV +A  ++ D        G V    GR +SNIV MGMG
Sbjct: 154 PFCATGKLGLTRNMSTGEILEQVRVAARMMRD--------GEVAGGPGR-LSNIVFMGMG 204

Query: 189 EPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHA 245
           EP+ N+ +V  ++    A    G   S R IT+ST G VP I ++  E I V LA+SLHA
Sbjct: 205 EPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIRKLTAEGIPVRLAVSLHA 264

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            S+ LR+ LVP+N+++    ++DA   Y  LS+ RR++ EY +++GIND    A  L K 
Sbjct: 265 PSDALRDELVPMNKRFNTTQVLDAAHDY-FLSSKRRVSIEYALMRGINDQAEHARLLAKR 323

Query: 306 LKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           L       A +N IP NP  G  +  S  +D   F + +  +G ++ +R  RG DI  AC
Sbjct: 324 LNHYGDDWAHVNPIPLNPIEGSRWTASKPEDEQQFLDILHHAGITATLRDTRGSDIDGAC 383

Query: 363 GQLKSLSK 370
           GQL + +K
Sbjct: 384 GQLAAKTK 391


>gi|239982588|ref|ZP_04705112.1| hypothetical protein SalbJ_24361 [Streptomyces albus J1074]
 gi|291454431|ref|ZP_06593821.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291357380|gb|EFE84282.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 370

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 185/369 (50%), Gaps = 29/369 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +   E +EA+  IG        R  Q+ +  + R   D    +DI    R  L    
Sbjct: 24  LADLTPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAGSREKLR--- 76

Query: 69  SIIYPEI--VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           S + P++  V   ISCD   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 77  SELLPDLMSVVRHISCDDDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 131

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++     L D           +P    ++SNIV 
Sbjct: 132 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 182

Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP I R  +E     LA+
Sbjct: 183 MGMGEPLANYNRVTGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAV 242

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++D+   Y    + RR++ EY +++ IND       
Sbjct: 243 SLHAPDDELRDTLVPVNTRWKVREVLDSAWEY-AEKSGRRVSIEYALIRDINDQAWRGDL 301

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LK     +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  A
Sbjct: 302 LGRLLKNKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIASHGVPVTVRDTRGQEIDGA 361

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 362 CGQLAATER 370


>gi|298346468|ref|YP_003719155.1| putative Fe-S-cluster redox protein [Mobiluncus curtisii ATCC
           43063]
 gi|298236529|gb|ADI67661.1| possible Fe-S-cluster redox protein [Mobiluncus curtisii ATCC
           43063]
          Length = 390

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/349 (34%), Positives = 185/349 (53%), Gaps = 22/349 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +  + R   D   M+D+    R    +    + PE++   ++    + W  + 
Sbjct: 58  FRADQVARHYFGRFEADPAQMTDLGPADR----ERARDLLPELITPVVTQVADKGWTRKT 113

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
             R   G  ++E+V +    R TLCVSSQVGC + C FC TG   L RNL+A EIL QV 
Sbjct: 114 LWRLFDG-AQVESVLMRYPKRVTLCVSSQVGCGMGCPFCATGQLGLTRNLSAAEILEQVR 172

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210
           LA          +D E +  PS   ++SN+V MGMGEPL N+ ++  ++    A    G 
Sbjct: 173 LAAK------AAQDGE-LGSPS---RLSNLVFMGMGEPLANYKSLLHTIRTLTAEVPQGF 222

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S R + +ST G VP I ++ +E + V LA+SLHA  ++LRN L+P+NR+Y ++ L+D 
Sbjct: 223 GISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSLHAPDDELRNELIPMNRRYQVDELLDT 282

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEY 326
              Y   +  RR++ EY +++ +ND P  A  L   L       A +N IP NP PG  +
Sbjct: 283 AYAY-FQATGRRVSIEYALIRDMNDHPWRAQLLADKLNERGKTWAHVNPIPLNPTPGSIW 341

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
             S  + +  F E ++++G S+ +R  RG DI  ACGQL + +K+ P  
Sbjct: 342 DASLPRVMDEFMEILRQAGISTTLRDTRGSDIDGACGQLAAKAKQSPAA 390


>gi|297621026|ref|YP_003709163.1| putative Fe-S-cluster redox enzyme, Cfr family [Waddlia
           chondrophila WSU 86-1044]
 gi|297376327|gb|ADI38157.1| putative Fe-S-cluster redox enzyme, Cfr family [Waddlia
           chondrophila WSU 86-1044]
          Length = 359

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 115/306 (37%), Positives = 171/306 (55%), Gaps = 34/306 (11%)

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
           PEI  +    D  RK L+RF    +     +E+V IP +   +LCVSSQ GC + C+FC 
Sbjct: 66  PEISHQLTDGD-VRKLLIRFDDGNV-----VESVVIPMQFGLSLCVSSQAGCRMGCTFCQ 119

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           TG   L R+L +EEI+ Q  +AR +L             +P     I NIV MGMGEP+ 
Sbjct: 120 TGRIGLKRHLRSEEIVAQGFIARHVLR------------LP-----IRNIVFMGMGEPMD 162

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI--GVMLAISLHAVSNDL 250
           NFD V +++ + SD  G++F  R +T+ST G V  I R   E+   V LA+S++A ++ L
Sbjct: 163 NFDAVSQAIKVFSDQGGMAFGMRHLTVSTVGRVDGIRRFVSEVNPAVNLAVSINAPNDAL 222

Query: 251 RNILVPINRKYPL----EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           R  L+P+ RKY L    E L+D C H       R +   YV++KG+NDS   A  L   +
Sbjct: 223 RKTLMPLTRKYSLGTIKEALLDYCSH-----PRRSVLIGYVLIKGVNDSLELADELAAYI 277

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KG+ AK+NLIP+NP     Y   + + +  F+  ++  G S+ +R  +G +++AACGQL 
Sbjct: 278 KGLRAKVNLIPYNPQESDPYETPESESVNAFAARLRAQGVSTLLRQTKGDEMMAACGQLG 337

Query: 367 SLSKRI 372
            ++K +
Sbjct: 338 GVNKSV 343


>gi|239944638|ref|ZP_04696575.1| hypothetical protein SrosN15_26832 [Streptomyces roseosporus NRRL
           15998]
 gi|239991102|ref|ZP_04711766.1| hypothetical protein SrosN1_27614 [Streptomyces roseosporus NRRL
           11379]
 gi|291448102|ref|ZP_06587492.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351049|gb|EFE77953.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 368

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 176/342 (51%), Gaps = 25/342 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDG--TRKW 88
            R  Q+ +  + R   D    ++I    R  L +    ++PE++     ISCD   TRK 
Sbjct: 42  FRAQQLSQHYFARYAHDPAEWTNIPAASREKLAE---ALFPELMSVIRHISCDDDTTRKT 98

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L +     +     +E+V +    R T+C+SSQ GC + C FC TG   L RNL+  EI+
Sbjct: 99  LWKLHDGTL-----VESVLMRYPERVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIV 153

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q++     L D           +P    ++SNIV MGMGEPL N+  V  ++   +D  
Sbjct: 154 HQIVDGMRALRDGE---------VPGGPARLSNIVFMGMGEPLANYKRVVGAIRRLTDPE 204

Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             GL  S+R IT+ST G VP + R  +E     LA+SLHA  ++LR+ LVP+N ++ +  
Sbjct: 205 PDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVRE 264

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           ++DA   Y    + RRI+ EY +++ IND       L ++LKG    +NLIP NP PG +
Sbjct: 265 VLDAAWEY-AEKSGRRISIEYALIRDINDQAWRGDLLGRLLKGKRVHVNLIPLNPTPGSK 323

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +  S  +D   F E I   G    +R  RG +I  ACGQL +
Sbjct: 324 WTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGACGQLAA 365


>gi|257785159|ref|YP_003180376.1| radical SAM enzyme, Cfr family [Atopobium parvulum DSM 20469]
 gi|257473666|gb|ACV51785.1| radical SAM enzyme, Cfr family [Atopobium parvulum DSM 20469]
          Length = 372

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 179/361 (49%), Gaps = 28/361 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L  +  E++ + +  +G P    + R  QI +WI+ +G   F  MS++ + +R  L+
Sbjct: 32  KSDLRSLSSEQILDLVTSLGQP----KFRAKQIEEWIWSKGATSFDQMSNLPKTLREELS 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   +   E V  ++S DG+RK+LLR+P         +E V +P  ++ ++C S+Q GC+
Sbjct: 88  KQVILAGAEQVVRQVSEDGSRKYLLRYP-----DGTSVECVGMPNGNKLSVCASTQAGCA 142

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TG   L R+L+A EI  QV+  R    DF                +++++V+M
Sbjct: 143 MGCAFCATGASGLTRSLSASEIYEQVMHVRD---DFD--------------TRVTSVVLM 185

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEP  N+D    ++   +   G     R IT+ST G +P I R   E     LA+SLH
Sbjct: 186 GQGEPFMNYDATLTAMRRLNSPDGAGIGARHITVSTCGVIPMIKRFASEPEQFTLAVSLH 245

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +     R+ L+P  RKY L  L D    Y      RR T+EY ++KG+NDS  +   L  
Sbjct: 246 SAVQKTRDALMPGVRKYSLIHLYDIMGEYVD-KTGRRPTYEYALIKGVNDSDNELGALRD 304

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             +G    +N+I  N   G ++  +       F   +   G  + IR  RG DI AACGQ
Sbjct: 305 FCRGTLCHVNIIQLNEIEGSKFHPTSPARAQEFVNSLNSVGVEATIRLSRGSDIDAACGQ 364

Query: 365 L 365
           L
Sbjct: 365 L 365


>gi|238063328|ref|ZP_04608037.1| radical SAM domain-containing protein [Micromonospora sp. ATCC
           39149]
 gi|237885139|gb|EEP73967.1| radical SAM domain-containing protein [Micromonospora sp. ATCC
           39149]
          Length = 363

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 184/353 (52%), Gaps = 25/353 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCD--GTRKW 88
            R  Q+    + R +RD   M+D+   +R  L      +++ P     +++CD   TRK 
Sbjct: 26  FRAKQMSTHYFGRLVRDPASMTDLPAAIRDRLAGELLPTLLTPV---RELACDDGATRKA 82

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R     +     +E+V +    R T+C+SSQ GC + C FC TG   L RNL+  EI+
Sbjct: 83  LWRLHDGSL-----VESVLMGYPDRVTVCISSQAGCGMACPFCATGQAGLTRNLSTAEIV 137

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASD 206
            Q +    +              +     ++S++V MGMGEPL N+  V  ++   +A  
Sbjct: 138 DQAVYLAGV---------AASGAVAGSPPRLSHVVFMGMGEPLANYSRVVAAIRRLVAPV 188

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             GL  S+R IT+ST G VP I R+  E++ V LA+SLHA  ++LR+ LVP+N+++ +  
Sbjct: 189 PEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTLALSLHAPDDELRDELVPVNQRWKVAE 248

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           ++DA   Y      RR++ EY M+K +ND P  A  L ++L G    +NLIP NP PG  
Sbjct: 249 VLDAAWDY-AARTGRRVSIEYAMIKNVNDQPWRADLLGQLLAGRLTHVNLIPLNPTPGSR 307

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQ 378
           +  S +     F   ++ +G S+ +R  RG +I  ACGQL +   R  + P++
Sbjct: 308 WDASPKPVEREFVRRLRAAGVSTTVRDTRGREIDGACGQLAAAGDRDTETPQE 360


>gi|329947859|ref|ZP_08294791.1| 23S rRNA m2A2503 methyltransferase [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328523483|gb|EGF50581.1| 23S rRNA m2A2503 methyltransferase [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 391

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/349 (36%), Positives = 179/349 (51%), Gaps = 36/349 (10%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDGTRK--- 87
            R  QI +  +    RD   M+D+    R    Q  + + PE++     +  DG R    
Sbjct: 54  FRADQISRHYFTHLTRDGADMTDLPASQR---EQLCAELLPELISPVRALRADGGRTIKH 110

Query: 88  -WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
            W L          V +E+V +  K R TLCVSSQ GC + C FC TG   L RNL+  E
Sbjct: 111 LWELH-------DGVRVESVLMRYKDRTTLCVSSQAGCGMACPFCATGQMGLTRNLSTAE 163

Query: 147 ILLQVLLA--RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-- 202
           I+ QV  A   S  GD  G         P+   ++SN+V MGMGEP+ N+ NV  +L   
Sbjct: 164 IVEQVRHAAQTSAAGDLTGG--------PA---RLSNVVFMGMGEPMVNYRNVVGALHRL 212

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKY 261
           I     G   S R IT+ST G VP I R+ GE + V LA+SLHA  ++LR+ L+P+N ++
Sbjct: 213 IDPAPEGFGMSARGITVSTVGLVPLIRRLAGEGLPVTLAVSLHAPDDELRDELIPVNSRW 272

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPF 318
            +  L+DA   Y  L+  RR++ EY ++K +ND    A  L   L       A +N IP 
Sbjct: 273 KVGELLDAAHDY-FLATGRRVSIEYALIKDMNDHSWRAQLLADELNRRDAGWAHVNPIPL 331

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           NP PG  + CS+      F + ++R+G ++ +R  RG DI  ACGQL +
Sbjct: 332 NPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGSDIDGACGQLAT 380


>gi|227833380|ref|YP_002835087.1| hypothetical protein cauri_1556 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184366|ref|ZP_06043787.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454396|gb|ACP33149.1| hypothetical protein cauri_1556 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 368

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 180/356 (50%), Gaps = 31/356 (8%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78
           EAL ++G+P    + R  Q+ K  YV    D   M+DI    R  + +       E + +
Sbjct: 31  EALAELGLP----KFRAKQLAKHYYVHHTADVSEMTDIPAAAREAVQERLFPTLMEPIRQ 86

Query: 79  KISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
             + DG T K L R     +     +E+V +    R TLC+SSQ GC + C FC TG   
Sbjct: 87  TSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQAGCGMACPFCATGQGG 141

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
           L RNL+  EI+ Q   A  L+ +               G ++SN+V MGMGEPL N+  V
Sbjct: 142 LDRNLSTAEIVEQFRHAARLMEE--------------EGGRLSNVVFMGMGEPLANYKRV 187

Query: 198 KKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNIL 254
             ++     S+  G   S+R +T+ST G  P I ++  E++   LA+SLH   ++LR+ L
Sbjct: 188 VHAVRQITGSELTGFGLSQRNVTVSTVGLAPAIRKLADEDLSCTLAVSLHTPDDELRDTL 247

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPA 311
           VP+N ++P+E ++DA ++Y   S  RR++ EY +++  ND    A  L + L    G   
Sbjct: 248 VPVNNRWPVEEVLDAAKYYADKS-GRRVSIEYALIRDKNDQDFRADMLGRKLHAALGSKV 306

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +N+IP NP PG E+  + +     F   +   G    +R  +G +I AACGQL +
Sbjct: 307 HVNVIPLNPTPGSEWDAAPKARQDEFVRRVIAQGVPCTVRDTKGDEIAAACGQLAA 362


>gi|306822705|ref|ZP_07456083.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679]
 gi|304554250|gb|EFM42159.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679]
          Length = 393

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 193/358 (53%), Gaps = 30/358 (8%)

Query: 23  KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE---K 79
           ++G+P    R R  Q+    Y     D +  SD     R    + F   +P ++ E   +
Sbjct: 57  ELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAEAAEAF---FPTLITEVTRQ 109

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
           ++ +GT    ++   R   G + IE+V +   +R TLC+SSQVGC + C FC TG   L 
Sbjct: 110 VADEGT---TIKTLWRLFDGSL-IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLT 165

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RN++A EI+ QV +A   + D        G V    GR +SNIV MGMGEP+ N+ +V  
Sbjct: 166 RNMSAGEIVEQVRVAAKAMRD--------GEVAGGPGR-LSNIVFMGMGEPMGNYRSVLS 216

Query: 200 SLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVP 256
           ++    A    G   S R IT+ST G VP I ++  E I V LA+SLHA S++LR+ LVP
Sbjct: 217 AVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVP 276

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKI 313
           +N+++ +  ++DA   Y  L++ RR++ EY +++GIND    A  L K L       A +
Sbjct: 277 MNKRFDITQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHV 335

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           N IP NP  G ++  S  +D   F + + ++G ++ +R  RG DI  ACGQL +  ++
Sbjct: 336 NPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQDIDGACGQLAAKERQ 393


>gi|282861394|ref|ZP_06270459.1| radical SAM enzyme, Cfr family [Streptomyces sp. ACTE]
 gi|282564052|gb|EFB69589.1| radical SAM enzyme, Cfr family [Streptomyces sp. ACTE]
          Length = 368

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 187/369 (50%), Gaps = 29/369 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +  +E +EA+  IG        R  Q+ +  + R   D    ++I    R  L +  
Sbjct: 22  LADLTPDERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTNIPAGSRDRLAE-- 75

Query: 69  SIIYPEI--VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             ++P++  V   ISCD   TRK L +     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  -AMFPDLMSVVRHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPYRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++     L D           +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y    + RRI+ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRISIEYALIRDINDQAWRGDL 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  A
Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAAAER 368


>gi|72161087|ref|YP_288744.1| ribosomal RNA large subunit methyltransferase N [Thermobifida fusca
           YX]
 gi|123760876|sp|Q47S46|RLMN_THEFY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|71914819|gb|AAZ54721.1| Conserved hypothetical protein 48 [Thermobifida fusca YX]
          Length = 365

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 124/347 (35%), Positives = 184/347 (53%), Gaps = 35/347 (10%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDG--TRKW 88
            R  Q+ +  + R   D   M+D+    R  L +    + P+++   + ++CD   TRK 
Sbjct: 39  FRARQLAQHYFGRLEADTARMTDLPAASRERLGE---ALLPQLLTPVKHVTCDNGMTRKT 95

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R       G V +E+V +    R TLCVSSQ GC + C FC TG   L RNL+  EI+
Sbjct: 96  LWR----AFDG-VLVESVLMRYPDRVTLCVSSQAGCGMNCPFCATGQAGLTRNLSTAEIV 150

Query: 149 LQVL-----LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
            QV+     LAR  +   PG              +ISNIV MGMGEPL N+  V  ++  
Sbjct: 151 DQVVSSARDLARGTVAGGPG--------------RISNIVFMGMGEPLANYKRVLAAIRR 196

Query: 204 ASDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRK 260
            +D +  GL  S+R IT+ST G VP I ++  E + V LA+SLHA  ++LR+ LVP+N +
Sbjct: 197 ITDPVPDGLGISQRGITVSTVGLVPAIEKLTAERMQVRLAVSLHAPDDELRDELVPVNHR 256

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           + +  ++DA   Y   +  RR++ EY +++ IND    A  L +++ G  A +NLIP NP
Sbjct: 257 WKVAEVLDAAWRYAD-TTGRRVSIEYALIRDINDQAWRADLLGRLVAGRLAHVNLIPLNP 315

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            PG ++  S  +    F   ++  G S  +R  RG +I  ACGQL +
Sbjct: 316 TPGSKWTASRPEVEREFVRRLRSHGVSVTVRDTRGREIDGACGQLAA 362


>gi|227488624|ref|ZP_03918940.1| possible Fe-S-cluster redox protein [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091518|gb|EEI26830.1| possible Fe-S-cluster redox protein [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 398

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 195/381 (51%), Gaps = 38/381 (9%)

Query: 14  REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73
           ++E  E L ++G+P    + R +QI +  Y R   D + M+D+ + VR  + +    ++P
Sbjct: 30  KDERIEILKELGLP----KFRDNQIARHYYGRFEADPELMTDLPESVRTTVGEK---LFP 82

Query: 74  EI---VDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           ++   V E  + DG T+K L +     +     +E+V +    R TLC+SSQ GC + C 
Sbjct: 83  QLMSPVRETSADDGKTQKMLWKLHDGTL-----LESVLMEYPDRATLCISSQAGCGMACP 137

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG   L RNL+  EI+ QV  A                 + + G ++SNIV MGMGE
Sbjct: 138 FCATGQGGLDRNLSTGEIVDQVRAA--------------AATMQAKGGRLSNIVFMGMGE 183

Query: 190 PLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           PL N++ V  ++         G   S+R ITLST G  P I R   E +   LA+SLH  
Sbjct: 184 PLANYNRVLSAIRQITQPSPEGFGISQRGITLSTVGLAPAIRRFAAEGLSCRLAVSLHTP 243

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++LR+ LVP N ++ +  ++DA R Y   S  RR++ EY +++ IND P  A  L K L
Sbjct: 244 DDELRDSLVPANNRWSIAEVLDAAREYAEAS-GRRVSIEYALIRDINDQPWRADLLGKKL 302

Query: 307 KGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            G       +NLIP NP PG ++  S ++    F + +   G +  +R  RG +I AACG
Sbjct: 303 HGALGSKVHVNLIPLNPTPGSKWDASPKRVQDEFQKRVIARGVTCTVRDTRGQEIAAACG 362

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QL +  +R     R+  + T 
Sbjct: 363 QLAA-EERTGAAARRAKEATA 382


>gi|302844849|ref|XP_002953964.1| hypothetical protein VOLCADRAFT_121224 [Volvox carteri f.
           nagariensis]
 gi|300260776|gb|EFJ44993.1| hypothetical protein VOLCADRAFT_121224 [Volvox carteri f.
           nagariensis]
          Length = 438

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 196/375 (52%), Gaps = 44/375 (11%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL--- 64
           +++G    ELE+   + G P    R R  Q+ + + ++G    + ++ I +  R  L   
Sbjct: 91  TILGSELTELEDLAERYGQP----RFRAKQLLEGV-LKGAHSVEEITAIPKSWRAQLLAD 145

Query: 65  --NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
                 S ++  + DE    DGTRK+LL+     I     +ETV IP + R T+CVSSQV
Sbjct: 146 GVRSGRSRLHHSVGDE----DGTRKFLLQLHDGRI-----VETVGIPTEDRLTVCVSSQV 196

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C+FC TG     RNL   EIL QVL  +  L                 GR++SN+
Sbjct: 197 GCPMRCTFCATGKGGFARNLAPHEILDQVLTVQEQL-----------------GRRVSNV 239

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARV-GEEIGVMLA 240
           V MGMGEPL N   V ++    +  +G+  +   IT+ST G VPN I R+    +   LA
Sbjct: 240 VFMGMGEPLLNLPAVVRAYQGLNQQVGIGGAF--ITISTVG-VPNAIPRLAASSLKATLA 296

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +  LR  L+P  + YPLE LI  C  Y  ++  RR+TFEY +L G+ND    A 
Sbjct: 297 VSLHAPNQALRERLIPSAKAYPLEALIQDCVTYYRIT-GRRVTFEYTLLSGVNDELEHAR 355

Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
            L  +L+   + + +N+IP+NP    E++   +  +  F   ++ +G +  +R  RGL+ 
Sbjct: 356 ELTALLRRHDLMSHVNIIPWNPVDESEFVRPSRNRVFAFRRAVEAAGLACTVRETRGLEA 415

Query: 359 LAACGQLKSLSKRIP 373
            AACGQL++  ++ P
Sbjct: 416 AAACGQLRNRFQKQP 430


>gi|227547301|ref|ZP_03977350.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212260|gb|EEI80156.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 389

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 111/271 (40%), Positives = 159/271 (58%), Gaps = 16/271 (5%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE+V +   +R TLC+SSQVGC + C FC TG   L RN++  EI+ QV +A  ++ D  
Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220
                 G V    GR +SNIV MGMGEP+ N+++V  ++    A    G   S R IT+S
Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236

Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T G VP I ++  E I V LA+SLHA S++LR+ LVP+N+++  + ++DA   Y  L++ 
Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDY-WLASK 295

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336
           RR++ EY +++GIND    A  L K L       A +N IP NP  G ++  S  +D   
Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F E + RSG ++ +R  RG DI  ACGQL +
Sbjct: 356 FLEILHRSGITATLRDTRGQDIDGACGQLAA 386


>gi|227504805|ref|ZP_03934854.1| possible Fe-S-cluster redox protein [Corynebacterium striatum ATCC
           6940]
 gi|227198655|gb|EEI78703.1| possible Fe-S-cluster redox protein [Corynebacterium striatum ATCC
           6940]
          Length = 372

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/371 (32%), Positives = 186/371 (50%), Gaps = 31/371 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L  +    + ++E    L ++G+P    + R +Q+ K  YV    D + M+DI    R  
Sbjct: 20  LPPKHFADLTQDERIAVLAELGLP----KFRANQLAKHYYVHRTADVEEMTDIPANKRAE 75

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L +       E + +  + DG T K L R     +     +E+V +    R TLC+SSQ 
Sbjct: 76  LQERLFPNLMEPIRQTSTDDGETTKSLWRLHDGTM-----LESVLMRYPGRATLCISSQA 130

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ Q  LA  L+ D               G +++N+
Sbjct: 131 GCGMACPFCATGQGGLDRNLSTAEIVEQFRLAAKLMED--------------EGGRLTNV 176

Query: 183 VMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEPL N+  V  ++      D  G   S+R +T+ST G  P I ++  E++   L
Sbjct: 177 VFMGMGEPLANYKRVVHAVRQITGQDLEGFGLSQRNVTVSTVGLAPAIRKLADEDLSCTL 236

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++P+E ++DA R+Y   S  RR++ EY +++  ND    A
Sbjct: 237 AVSLHTPDDELRDSLVPVNNRWPVEEVLDAARYYADKS-GRRVSIEYALIRDKNDQDFRA 295

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L + L    G    +N+IP NP PG E+  + +     F   +   G    +R  +G 
Sbjct: 296 DMLGQKLHRALGSKVHVNVIPLNPTPGSEWDAAPKARQDEFVRRVIAQGVPCTVRDTKGD 355

Query: 357 DILAACGQLKS 367
           +I AACGQL +
Sbjct: 356 EIAAACGQLAA 366


>gi|304389793|ref|ZP_07371752.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304326969|gb|EFL94208.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 390

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/349 (34%), Positives = 186/349 (53%), Gaps = 22/349 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +  + R   D   M+D++   R    +    + PE++   ++    + W  + 
Sbjct: 58  FRADQVARHYFGRFEADPAQMTDLAPADR----ERARDLLPELITPVVTQVADKGWTRKT 113

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
             R   G  ++E+V +    R TLCVSSQVGC + C FC TG   L RNL+A EIL QV 
Sbjct: 114 LWRLFDG-AQVESVLMRYPKRVTLCVSSQVGCGMGCPFCATGQLGLTRNLSAAEILEQVR 172

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210
           LA          +D E +  P+   ++SN+V MGMGEPL N+ ++  ++    A    G 
Sbjct: 173 LAAR------AAQDGE-LGSPA---RLSNLVFMGMGEPLANYKSLLHTIRTLTAEVPQGF 222

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S R + +ST G VP I ++ +E + V LA+SLHA  ++LRN L+P+NR+Y ++ L+D 
Sbjct: 223 GISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSLHAPDDELRNELIPMNRRYQVDELLDT 282

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEY 326
              Y   +  RR++ EY +++ +ND P  A  L   L       A +N IP NP PG  +
Sbjct: 283 AYAY-FQATGRRVSIEYALIRDMNDHPWRAQLLADKLNERGKTWAHVNPIPLNPTPGSIW 341

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
             S  + +  F E ++++G S+ +R  RG DI  ACGQL + +K+ P  
Sbjct: 342 DASLPRVMDEFMEILRQAGISTTLRDTRGSDIDGACGQLAAKAKQSPAA 390


>gi|307104499|gb|EFN52752.1| hypothetical protein CHLNCDRAFT_36696 [Chlorella variabilis]
          Length = 336

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 123/343 (35%), Positives = 185/343 (53%), Gaps = 35/343 (10%)

Query: 40  KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI-SCDGTRKWLLRFPARCIG 98
           K +   G R    ++ +S+++R  L +        ++   + S DGTRK+LL+       
Sbjct: 12  KQLRDAGARSVHDVTTLSKDLRAQLAERGVRTGRSVLHHSVASPDGTRKFLLQL----AD 67

Query: 99  GPVEIETVYIP----EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154
           G V +E V IP    ++ R T+CVSSQVGC + C+FC TG     RNL   EI+ QVL  
Sbjct: 68  GRV-VEAVGIPADGGDRRRLTVCVSSQVGCPMRCTFCATGKGGFARNLLPHEIVDQVL-- 124

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
                           V    G+++SNIV MGMGEPL N  +V ++  I +  +G+    
Sbjct: 125 ---------------TVQEEFGQRVSNIVFMGMGEPLLNLPSVLRAHEILNKDVGV--GA 167

Query: 215 RRITLSTSGFVPN-IARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           R IT+ST G VPN I R+   ++   LA+S+HA S  LR  +VP  R YPL+ L+  C+ 
Sbjct: 168 RHITISTVG-VPNAIRRMARLQLQSTLAVSIHAPSQALRETIVPSARAYPLDALMADCQE 226

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSD 330
           Y  LS  RR+TFEY +L G+ND    A  L  +L+   + + +NLIP+NP    E+    
Sbjct: 227 YFRLSG-RRVTFEYTLLAGVNDGVGQAEELAALLRRHDLRSHVNLIPWNPVDDSEFQRPT 285

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
           ++ +  F+  +++ G    +R  RGL+  AACGQL++  ++ P
Sbjct: 286 RRAVQAFAAALEQRGIPVSVRHTRGLEAAAACGQLRNQHQKTP 328


>gi|171742890|ref|ZP_02918697.1| hypothetical protein BIFDEN_02007 [Bifidobacterium dentium ATCC
           27678]
 gi|171278504|gb|EDT46165.1| hypothetical protein BIFDEN_02007 [Bifidobacterium dentium ATCC
           27678]
          Length = 393

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 192/358 (53%), Gaps = 30/358 (8%)

Query: 23  KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE---K 79
           ++G+P    R R  Q+    Y     D +  SD     R    + F   +P ++ E   +
Sbjct: 57  ELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAEAAEAF---FPTLITEVTRQ 109

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
           ++ +GT    ++   R   G + IE+V +   +R TLC+SSQVGC + C FC TG   L 
Sbjct: 110 VADEGT---TIKTLWRLFDGSL-IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLT 165

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RN++A EI+ QV +A   + D        G V    GR +SNIV MGMGEP+ N+ +V  
Sbjct: 166 RNMSAGEIVEQVRVAAKAMRD--------GEVAGGPGR-LSNIVFMGMGEPMGNYRSVLS 216

Query: 200 SLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVP 256
           ++    A    G   S R IT+ST G VP I ++  E I V LA+SLHA S++LR+ LVP
Sbjct: 217 AVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVP 276

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKI 313
           +N+++    ++DA   Y  L++ RR++ EY +++GIND    A  L K L       A +
Sbjct: 277 MNKRFDTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHV 335

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           N IP NP  G ++  S  +D   F + + ++G ++ +R  RG DI  ACGQL +  ++
Sbjct: 336 NPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQDIDGACGQLAAKERQ 393


>gi|297184182|gb|ADI20301.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 302

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/317 (37%), Positives = 168/317 (52%), Gaps = 21/317 (6%)

Query: 53  MSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112
           M+++S+  R LLN HF     E+   + S DGT K  ++           +E+V IP + 
Sbjct: 1   MTNLSKATRELLNAHFEFKQLEVDVMQQSNDGTIKNAVKLHDGAF-----VESVLIPTEK 55

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R T CVSSQVGCSL C+FC T   K +RNL  +EI  QV++      D  G E       
Sbjct: 56  RITACVSSQVGCSLDCTFCATAGLKRMRNLDPDEIYDQVVVI-----DRQGKEHF----- 105

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
              GR ++NIV MGMGEPL N++NV  ++   +D  GL  S +RITLST G VP + +  
Sbjct: 106 ---GRPLTNIVFMGMGEPLLNYNNVLAAIDKITDPKGLGMSPKRITLSTIG-VPKLIKKM 161

Query: 233 EEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            + GV   LAISLH+   + R  L+P+  +    + +     Y      R +TFEYV+ +
Sbjct: 162 ADDGVRFGLAISLHSAIEEKRAKLMPLAHRSTTLVDLRESLQYWYAKTGRGVTFEYVIWR 221

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
            IND+  DA+ L K    IP K+N+I +NP     Y  + Q  +  +   ++     + +
Sbjct: 222 DINDTEEDAIALAKFCGAIPTKVNIIQYNPIDNGPYTQASQAAVDLYKRILEERRIIATV 281

Query: 351 RTPRGLDILAACGQLKS 367
           R  RG DI AACGQL +
Sbjct: 282 RHSRGQDIDAACGQLAN 298


>gi|239621375|ref|ZP_04664406.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515836|gb|EEQ55703.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 389

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 16/271 (5%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE+V +   +R TLC+SSQVGC + C FC TG   L RN++  EI+ QV +A  ++ D  
Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220
                 G V    GR +SNIV MGMGEP+ N+++V  ++    A    G   S R IT+S
Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236

Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T G VP I ++  E I V LA+SLHA S++LR+ LVP+N+++  + ++DA   Y  L++ 
Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDY-WLASK 295

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336
           RR++ EY +++GIND    A  L K L       A +N IP NP  G ++  S  +D   
Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F E + R+G ++ +R  RG DI  ACGQL +
Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386


>gi|315655038|ref|ZP_07907942.1| cfr family radical SAM enzyme [Mobiluncus curtisii ATCC 51333]
 gi|315490694|gb|EFU80315.1| cfr family radical SAM enzyme [Mobiluncus curtisii ATCC 51333]
          Length = 390

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 120/349 (34%), Positives = 185/349 (53%), Gaps = 22/349 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +  + R   D   M+D+    R    +    + PE++   ++    + W  + 
Sbjct: 58  FRADQVARHYFGRFEADPAQMTDLGPADR----ERARDLLPELITPVVTQVADKGWTRKT 113

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
             R   G  ++E+V +    R TLCVSSQVGC + C FC TG   L RNL+A EIL QV 
Sbjct: 114 LWRLFDG-AQVESVLMRYPKRVTLCVSSQVGCGMGCPFCATGQLGLTRNLSAAEILEQVR 172

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210
           LA          +D E +  P+   ++SN+V MGMGEPL N+ ++  ++    A    G 
Sbjct: 173 LAAR------AAQDGE-LGSPA---RLSNLVFMGMGEPLANYKSLLHTIRTLTAEVPQGF 222

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S R + +ST G VP I ++ +E + V LA+SLHA  ++LRN L+P+NR+Y ++ L+D 
Sbjct: 223 GISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSLHAPDDELRNELIPMNRRYQVDELLDT 282

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEY 326
              Y   +  RR++ EY +++ +ND P  A  L   L       A +N IP NP PG  +
Sbjct: 283 AYAY-FQATGRRVSIEYALIRDMNDHPWRAQLLADKLNERGKTWAHVNPIPLNPTPGSIW 341

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
             S  + +  F E ++++G S+ +R  RG DI  ACGQL + +K+ P  
Sbjct: 342 DASLPRVMDEFMEILRQAGISTTLRDTRGSDIDGACGQLAAKAKQSPAA 390


>gi|23466064|ref|NP_696667.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
           longum NCC2705]
 gi|81753640|sp|Q8G481|RLMN_BIFLO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|23326790|gb|AAN25303.1| widely conserved hypothetical protein [Bifidobacterium longum
           NCC2705]
          Length = 389

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 16/271 (5%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE+V +   +R TLC+SSQVGC + C FC TG   L RN++  EI+ QV +A  ++ D  
Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220
                 G V    GR +SNIV MGMGEP+ N+++V  ++    A    G   S R IT+S
Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236

Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T G VP I ++  E I V LA+SLHA S++LR+ LVP+N+++  + ++DA   Y  L++ 
Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDY-WLASK 295

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336
           RR++ EY +++GIND    A  L K L       A +N IP NP  G ++  S  +D   
Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F E + R+G ++ +R  RG DI  ACGQL +
Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386


>gi|213691945|ref|YP_002322531.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523406|gb|ACJ52153.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458052|dbj|BAJ68673.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 389

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 158/271 (58%), Gaps = 16/271 (5%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE+V +   +R TLC+SSQVGC + C FC TG   L RN++  EI+ QV +A  ++ D  
Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220
                 G V    GR +SNIV MGMGEP+ N+++V  ++    A    G   S R IT+S
Sbjct: 184 ------GEVAGGAGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236

Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T G VP I ++  E I V LA+SLHA S++LR+ LVP+N+++    ++DA   Y  L++ 
Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDY-WLASK 295

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336
           RR++ EY +++GIND    A  L K L       A +N IP NP  G ++  S  +D   
Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F E + R+G ++ +R  RG DI  ACGQL +
Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386


>gi|322691316|ref|YP_004220886.1| hypothetical protein BLLJ_1127 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456172|dbj|BAJ66794.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 389

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 16/271 (5%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE+V +   +R TLC+SSQVGC + C FC TG   L RN++  EI+ QV +A  ++ D  
Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220
                 G V    GR +SNIV MGMGEP+ N+++V  ++    A    G   S R IT+S
Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236

Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T G VP I ++  E I V LA+SLHA S++LR+ LVP+N+++  + ++DA   Y  L++ 
Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDY-WLASK 295

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336
           RR++ EY +++GIND    A  L K L       A +N IP NP  G ++  S  +D   
Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F E + R+G ++ +R  RG DI  ACGQL +
Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386


>gi|317482872|ref|ZP_07941880.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA]
 gi|291516841|emb|CBK70457.1| 23S rRNA m(2)A-2503 methyltransferase [Bifidobacterium longum
           subsp. longum F8]
 gi|316915717|gb|EFV37131.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA]
          Length = 389

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 16/271 (5%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE+V +   +R TLC+SSQVGC + C FC TG   L RN++  EI+ QV +A  ++ D  
Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220
                 G V    GR +SNIV MGMGEP+ N+++V  ++    A    G   S R IT+S
Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236

Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T G VP I ++  E I V LA+SLHA S++LR+ LVP+N+++  + ++DA   Y  L++ 
Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDY-WLASK 295

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336
           RR++ EY +++GIND    A  L K L       A +N IP NP  G ++  S  +D   
Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F E + R+G ++ +R  RG DI  ACGQL +
Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386


>gi|18405124|ref|NP_565909.1| radical SAM domain-containing protein [Arabidopsis thaliana]
 gi|15809964|gb|AAL06909.1| At2g39670/F17A14.4 [Arabidopsis thaliana]
 gi|17065474|gb|AAL32891.1| Unknown protein [Arabidopsis thaliana]
 gi|20197047|gb|AAB97122.2| expressed protein [Arabidopsis thaliana]
 gi|23197704|gb|AAN15379.1| Unknown protein [Arabidopsis thaliana]
 gi|330254610|gb|AEC09704.1| radical SAM domain-containing protein [Arabidopsis thaliana]
          Length = 428

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 133/384 (34%), Positives = 196/384 (51%), Gaps = 41/384 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67
           LIGM   EL+E  + +G        R  Q+   IY R +   +  S++    R  L++  
Sbjct: 64  LIGMSEPELQELAINLG----QEGYRGKQLHHLIYKRKVNKVEDFSNLPLTFRKGLVDGG 119

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EK--SRGTLCVSSQ 121
           F +    I     + DGT K LL+         + IETV IP    EK  +R T CVSSQ
Sbjct: 120 FKVGRSPIYQTVTATDGTIKLLLKLEDN-----LLIETVGIPVQDDEKGITRLTACVSSQ 174

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC L CSFC TG     RNL   EI+ QVL            ED+          +++N
Sbjct: 175 VGCPLRCSFCATGKGGFSRNLQRHEIIEQVL----------AIEDV-------FKHRVTN 217

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVML 239
           +V MGMGEP+ N  +V  +    +    +   +R IT+ST G VPN  +     ++   L
Sbjct: 218 VVFMGMGEPMLNLKSVLDAHRCLNKD--IEIGQRMITISTVG-VPNTIKKLASHKLQSTL 274

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +  LR  +VP  + YPLE ++  CR Y   +N RR++FEY +L G+ND    A
Sbjct: 275 AVSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETN-RRVSFEYALLAGVNDQVEHA 333

Query: 300 LNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
           + L ++L+  G    +NLIP+NP  G EY    +K ++ F+  ++    ++ +R  RGLD
Sbjct: 334 VELAELLREWGKTYHVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGLD 393

Query: 358 ILAACGQLKSLSKRIPKVPRQEMQ 381
             AACGQL++  ++ P +   + Q
Sbjct: 394 ASAACGQLRNKFQKSPLLTETDSQ 417


>gi|315657100|ref|ZP_07909984.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492203|gb|EFU81810.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 390

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 120/349 (34%), Positives = 185/349 (53%), Gaps = 22/349 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +  + R   D   M+D+    R    +    + PE++   ++    + W  + 
Sbjct: 58  FRADQVARHYFGRFEADPAQMTDLGPADR----ERARDLLPELITPVVTQVADKGWTRKT 113

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
             R   G  ++E+V +    R TLCVSSQVGC + C FC TG   L RNL+A EIL QV 
Sbjct: 114 LWRLFDG-AQVESVLMRYPKRVTLCVSSQVGCGMGCPFCATGQLGLTRNLSAAEILEQVR 172

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210
           LA          +D E +  P+   ++SN+V MGMGEPL N+ ++  ++    A    G 
Sbjct: 173 LAAR------AAQDGE-LGSPA---RLSNLVFMGMGEPLANYKSLLHTIRTLTAEVPQGF 222

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S R + +ST G VP I ++ +E + V LA+SLHA  ++LRN L+P+NR+Y ++ L+D 
Sbjct: 223 GISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSLHAPDDELRNELIPMNRRYQVDELLDT 282

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEY 326
              Y   +  RR++ EY +++ +ND P  A  L   L       A +N IP NP PG  +
Sbjct: 283 AYAY-FQATGRRVSIEYALIRDMNDHPWRAQLLADKLNERGKTWAHVNPIPLNPTPGSIW 341

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
             S  + +  F E ++++G S+ +R  RG DI  ACGQL + +K+ P  
Sbjct: 342 DASLPRVMDEFMEILRQAGISTTLRDTRGSDIDGACGQLAAKAKQSPAA 390


>gi|297156855|gb|ADI06567.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           bingchenggensis BCW-1]
          Length = 368

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 179/345 (51%), Gaps = 25/345 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VDEKISCDG--TRKW 88
            R  Q+ +  + R   D    +DI    R  L    + + P++  V   ISCD   TRK 
Sbjct: 42  FRAGQVSRHYFARYSHDPAQWTDIPAAAREKLA---AGLLPDLMSVVRHISCDDDTTRKT 98

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R       G + +E+V +    R T+C+SSQ GC + C FC TG   L RNL+  EI+
Sbjct: 99  LWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIV 153

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q++          G   +    IP    ++SNIV MGMGEPL N++ V  ++   +D  
Sbjct: 154 HQIV---------DGMRALRDGEIPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPE 204

Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             GL  S+R IT+ST G VP + R  +E     LA+SLHA  + LR+ LVP+N ++ +  
Sbjct: 205 PDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDGLRDTLVPVNTRWKVRE 264

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           ++DA   Y   ++ RR++ EY +++ IND    A  L ++LKG    +NLIP NP PG +
Sbjct: 265 VLDAAWEY-AETSGRRVSIEYALIRDINDQAWRADLLGRLLKGRRVHVNLIPLNPTPGSK 323

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           +  S  +D   F   ++  G    +R  RG +I  ACGQL +  +
Sbjct: 324 WTASRPEDEKAFVAALEAHGVPVTVRDTRGQEIDGACGQLAATER 368


>gi|255584867|ref|XP_002533149.1| catalytic, putative [Ricinus communis]
 gi|223527044|gb|EEF29230.1| catalytic, putative [Ricinus communis]
          Length = 420

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 189/375 (50%), Gaps = 40/375 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
           L+GM   EL++     G        R  Q+   IY R +++ Q  S + Q  R+ L +  
Sbjct: 58  LLGMSEPELQQLAADFG----QQSYRGKQLHHLIYQRKVKEIQDFSQLPQAFRNELQEAG 113

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP---EKS--RGTLCVSSQV 122
           + +    I     + DGT K L++     +     IETV IP   EK   R T C+SSQV
Sbjct: 114 WRVGRSPIYRTVTAADGTVKLLIKLEDNRL-----IETVGIPIQDEKGPVRLTACISSQV 168

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L CSFC TG     RNL   EI+ QVL    +  +                 +++N+
Sbjct: 169 GCPLRCSFCATGKGGYSRNLKRHEIVEQVLAIEEIFKN-----------------RVTNV 211

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLA 240
           V MGMGEP+ N  +V ++    +    +   +R IT+ST G VPN  +     ++   LA
Sbjct: 212 VFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVG-VPNTIKKLASHKLQSTLA 268

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +  LR  +VP  + YPL+ ++  CR Y  L  +RR++FEY +L G+ND    A 
Sbjct: 269 LSLHAPNQKLRETIVPSAKSYPLDAIMKDCRDY-FLETSRRVSFEYALLAGVNDRAEHAK 327

Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
            L ++L   G  + +NLIPFNP  G +Y    +K +  F+  ++    +  +R  RG+D 
Sbjct: 328 ELAELLHEWGRGSHVNLIPFNPIEGSDYQRPSKKAVQAFAAALESRKITVSVRQTRGMDA 387

Query: 359 LAACGQLKSLSKRIP 373
            AACGQL++  ++ P
Sbjct: 388 SAACGQLRNEFQKSP 402


>gi|312132647|ref|YP_003999986.1| fe-s-cluster redox enzyme [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|311773598|gb|ADQ03086.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum
           subsp. longum BBMN68]
          Length = 389

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 16/271 (5%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE+V +   +R TLC+SSQVGC + C FC TG   L RN++  EI+ QV +A  ++ D  
Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220
                 G V    GR +SNIV MGMGEP+ N+++V  ++    A    G   S R IT+S
Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236

Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T G VP I ++  E I V LA+SLHA S++LR+ LVP+N+++  + ++DA   Y  L++ 
Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDY-WLASK 295

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336
           RR++ EY +++GIND    A  L K L       A +N IP NP  G ++  S  +D   
Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F E + R+G ++ +R  RG DI  ACGQL +
Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386


>gi|297823853|ref|XP_002879809.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297325648|gb|EFH56068.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 419

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 136/385 (35%), Positives = 199/385 (51%), Gaps = 40/385 (10%)

Query: 9   LIGMMREELEE-ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLNQ 66
           LIGM   EL++ A+  + I Q   R +  Q+   IY R +   +  S++ Q  R  L+  
Sbjct: 52  LIGMSEPELQQLAINLVLIFQEGYRGK--QLHHLIYKRKVNKVEDFSNLPQTFRKELVEG 109

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EK--SRGTLCVSS 120
            F +    I     + DGT K LL+         + IETV IP    EK  +R T CVSS
Sbjct: 110 GFKVGRSPIYQTVTATDGTIKLLLKLEDN-----LLIETVGIPVQDDEKGITRLTACVSS 164

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC L CSFC TG     RNL   EI+ QVL            ED+          +++
Sbjct: 165 QVGCPLRCSFCATGKGGFSRNLQRHEIIEQVL----------AIEDV-------FKHRVT 207

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVM 238
           N+V MGMGEP+ N  +V  +    +    +   +R IT+ST G VPN  +     ++   
Sbjct: 208 NVVFMGMGEPMLNLKSVLDAHRCLNKD--IEIGQRMITISTVG-VPNTIKKLASHKLQST 264

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA +  LR  +VP  + YPLE ++  CR Y   +N RR++FEY +L G+ND    
Sbjct: 265 LAVSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETN-RRVSFEYALLAGVNDQVEH 323

Query: 299 ALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
           A+ L ++L+  G    +NLIP+NP  G EY    +K ++ F+  ++    ++ +R  RGL
Sbjct: 324 AVELAELLREWGKTYHVNLIPYNPIEGSEYKRPYKKAVLAFASALESRKITASVRQTRGL 383

Query: 357 DILAACGQLKSLSKRIPKVPRQEMQ 381
           D  AACGQL++  ++ P V   + Q
Sbjct: 384 DASAACGQLRNKFQKSPLVTETDGQ 408


>gi|158313018|ref|YP_001505526.1| radical SAM protein [Frankia sp. EAN1pec]
 gi|205829763|sp|A8L6D8|RLMN_FRASN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|158108423|gb|ABW10620.1| radical SAM enzyme, Cfr family [Frankia sp. EAN1pec]
          Length = 385

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 191/368 (51%), Gaps = 26/368 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLLNQ 66
           L  + R+E       +G+P      R  Q+ +  +   +R  D   M+D+   +R  L +
Sbjct: 25  LADLSRDERRAVATSLGLPA----FRADQLARHYFTHHLRADDADLMTDLPASIRPALVE 80

Query: 67  HF--SIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
                ++ P      + CDG  TRK + R     + G  +IE+V +    R T+CVSSQ 
Sbjct: 81  AMLPRLLTPATA---LDCDGGQTRKTVWR----TVDG-AKIESVLMRYPQRATVCVSSQA 132

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV+ A   +      E            ++SN+
Sbjct: 133 GCGMGCPFCATGQGGLTRNLSTAEIVEQVVDAARTMAARTTAEGGLPGGP----GRLSNV 188

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEPL N+  +  +L    D    GL  S R +T+ST G VP I R+ GE + V L
Sbjct: 189 VFMGMGEPLANYAALLAALHRLIDPAPDGLGLSARGLTVSTVGLVPAIRRLAGEGLPVTL 248

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ LVPIN ++P+  ++ A   Y  ++  RR++ EY ++ G+NDSP  A
Sbjct: 249 AVSLHAPDDELRDELVPINTRWPVAEVLAAAWEYARVTG-RRVSIEYALIDGVNDSPERA 307

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L  +L G  A +NLIP NP  G  +  S  +    F E ++  G ++ +R  RG +I 
Sbjct: 308 DALAALLVGQLAHVNLIPLNPTGGSSWQASAPRGQRVFVERLRARGVAATVRDTRGREIA 367

Query: 360 AACGQLKS 367
           AACGQL +
Sbjct: 368 AACGQLAA 375


>gi|325067056|ref|ZP_08125729.1| ribosomal RNA large subunit methyltransferase N [Actinomyces oris
           K20]
          Length = 370

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/349 (36%), Positives = 179/349 (51%), Gaps = 36/349 (10%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDGTRK--- 87
            R  Q+ +  +    RD   M+D+    R    Q  + + PE++     +  DG R    
Sbjct: 33  FRADQLSRHYFTHFTRDSADMTDLPAAQR---EQLCAELLPELITPVRALRADGGRTIKH 89

Query: 88  -WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
            W L          V +E+V +  K R TLCVSSQ GC + C FC TG   L RNL+  E
Sbjct: 90  LWELH-------DGVRVESVLMRYKERTTLCVSSQAGCGMACPFCATGQMGLTRNLSTGE 142

Query: 147 ILLQVLLA--RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
           I+ QV  A   S  G+  G         P+   ++SN+V MGMGEP+ N+ NV  +L   
Sbjct: 143 IVEQVRHAAQASAAGELTGG--------PA---RLSNVVFMGMGEPMVNYKNVVGALHRL 191

Query: 205 SDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKY 261
            D    G   S R IT+ST G VP I R+ GE + V LA+SLHA  ++LR+ L+P+N K+
Sbjct: 192 IDPAPEGFGLSARGITVSTVGLVPLIRRLAGEGLPVTLAVSLHAPDDELRDELIPVNSKW 251

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPF 318
            +  L+DA   Y  L+  RR++ EY ++K +ND    A  L   L       A +N IP 
Sbjct: 252 KVGELLDAAHDY-FLATGRRVSIEYALIKDMNDHAWRAQLLADELNRRDTGWAHVNPIPL 310

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           NP PG  + CS+      F + ++R+G ++ +R  RG DI  ACGQL +
Sbjct: 311 NPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGSDIDGACGQLAT 359


>gi|111225135|ref|YP_715929.1| ribosomal RNA large subunit methyltransferase N [Frankia alni
           ACN14a]
 gi|122953799|sp|Q0RDQ8|RLMN_FRAAA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|111152667|emb|CAJ64408.1| Fe-S-cluster redox enzyme [Frankia alni ACN14a]
          Length = 419

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 189/366 (51%), Gaps = 27/366 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLLNQ 66
           L  + R+E  +  + +G P      R  Q+ +  + R +   +   M+D+ +  R  L +
Sbjct: 35  LADLSRDERRQVAVALGQPA----FRADQVSRHYFARLVDADETDAMTDLPENARGPLLE 90

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +    +SCD   TRK   R     +     +E+V +    R T+CVSSQ GC
Sbjct: 91  ALLPRL-LVPARTLSCDDGLTRKTAWRTADGAL-----LESVIMRYPDRATVCVSSQAGC 144

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ QV+ A  +L      +++ G      GR +SN+V 
Sbjct: 145 GMGCPFCATGQGGLTRNLSTAEIVEQVVHAARVLRR----QELAG----GQGR-LSNVVF 195

Query: 185 MGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241
           MGMGEPL N+  V  +L   IA    GL  S R +T+ST G VP + R+ GE + V LA+
Sbjct: 196 MGMGEPLANYTAVTAALRRLIAPSPEGLGLSARGLTVSTVGLVPAMRRLAGEGLPVTLAV 255

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVPIN ++P+  ++ A   Y  ++  RR++ EY ++ G+ND    A  
Sbjct: 256 SLHAPDDELRDELVPINTRWPVAEVLAAAWEYAEVTG-RRVSIEYALIDGVNDDVARADA 314

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +L G  A +NLIP NP  G  +  S       F   ++  G ++ +R  RG +I AA
Sbjct: 315 LATLLAGRLAHVNLIPLNPTEGSSWQASAPAGQRAFVRRLRERGIATTVRDTRGREIAAA 374

Query: 362 CGQLKS 367
           CGQL +
Sbjct: 375 CGQLAA 380


>gi|224367133|ref|YP_002601296.1| hypothetical protein HRM2_00090 [Desulfobacterium autotrophicum
           HRM2]
 gi|223689849|gb|ACN13132.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 342

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/297 (37%), Positives = 162/297 (54%), Gaps = 29/297 (9%)

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
           V +++  D T K++ R    C      IE+V IP K   TLCVS+Q GC + C FC T  
Sbjct: 68  VVDQMEEDNTVKFVTRLHDGC-----SIESVIIPMKQYNTLCVSTQAGCRMGCRFCETAR 122

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
               RNL   EI  Q+  AR+ LG                 +KISNIV MGMGEP  NFD
Sbjct: 123 SGFKRNLQVHEITGQLFSARNTLG-----------------KKISNIVFMGMGEPFDNFD 165

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM---LAISLHAVSNDLRN 252
           N+ +S+ + +D  G   + R +T+ST G VP I R    +G+    LA+S+H+  +++R+
Sbjct: 166 NLVRSIRVFNDQKGFDVAFRHMTVSTCGLVPGI-RALAGLGLTQLSLAVSVHSAIDEVRS 224

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
           +L+P+NR+YPL +L  A   YP L   R I  EYV++KG+NDS   A  L++ L  +  +
Sbjct: 225 VLMPVNRRYPLNVLRAALADYP-LHKRRYILVEYVLIKGVNDSQEAAAALVQYLVPLKVR 283

Query: 313 INLIPFNPW--PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +NLI +NP   P  E+   D   +  F+  ++ SG     R  +G  ++A CGQL +
Sbjct: 284 VNLIAYNPGRDPDPEFQGVDDCSMNQFASWLEDSGLFVIKRWSKGQKLMAGCGQLST 340


>gi|326771755|ref|ZP_08231040.1| radical SAM enzyme, Cfr family [Actinomyces viscosus C505]
 gi|326637888|gb|EGE38789.1| radical SAM enzyme, Cfr family [Actinomyces viscosus C505]
          Length = 420

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/349 (36%), Positives = 179/349 (51%), Gaps = 36/349 (10%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDGTRK--- 87
            R  Q+ +  +    RD   M+D+    R  L    + + PE++     +  DG R    
Sbjct: 83  FRADQLSRHYFTHFTRDSADMTDLPAAQREQL---CAELLPELITPVRALRADGGRTIKH 139

Query: 88  -WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
            W L          V +E+V +  K R TLCVSSQ GC + C FC TG   L RNL+  E
Sbjct: 140 LWELH-------DGVRVESVLMRYKERTTLCVSSQAGCGMACPFCATGQMGLTRNLSTGE 192

Query: 147 ILLQVLLA--RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-- 202
           I+ QV  A   S  G+  G         P+   ++SN+V MGMGEP+ N+ NV  +L   
Sbjct: 193 IVEQVRHAAQASAAGELTGG--------PA---RLSNVVFMGMGEPMVNYKNVVGALHRL 241

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKY 261
           I     G   S R IT+ST G VP I R+ GE + V LA+SLHA  ++LR+ L+P+N K+
Sbjct: 242 IDPAPEGFGLSARGITVSTVGLVPLIRRLAGEGLPVTLAVSLHAPDDELRDELIPVNSKW 301

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPF 318
            +  L+DA   Y  L+  RR++ EY ++K +ND    A  L   L       A +N IP 
Sbjct: 302 KVGELLDAAHDY-FLATGRRVSIEYALIKDMNDHAWRAQLLADELNRRDTGWAHVNPIPL 360

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           NP PG  + CS+      F + ++R+G ++ +R  RG DI  ACGQL +
Sbjct: 361 NPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGSDIDGACGQLAT 409


>gi|289643660|ref|ZP_06475773.1| radical SAM enzyme, Cfr family [Frankia symbiont of Datisca
           glomerata]
 gi|289506551|gb|EFD27537.1| radical SAM enzyme, Cfr family [Frankia symbiont of Datisca
           glomerata]
          Length = 413

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 188/368 (51%), Gaps = 31/368 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLLNQ 66
           L  +   +  E  + +G P      R  Q+ +  + R +R  D + M+D+    R  L +
Sbjct: 46  LADLTTTQRRELTVSLGEPA----FRADQVARHYFARYLRAGDAEAMTDLPAASRAALLE 101

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                        ++CD   T K L R       G V IE+V +    R T+CVSSQ GC
Sbjct: 102 ALLPAL-LTPARTMTCDAGATHKTLWR----AFDG-VLIESVLMRYPDRATVCVSSQAGC 155

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNI 182
            + C FC TG   L RNL+A EI+ QV+ A   +  G+  G              ++SN+
Sbjct: 156 GMGCPFCATGQGGLTRNLSAAEIVEQVVAAAGAIARGELAGGPA-----------RLSNV 204

Query: 183 VMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEPL N+  V  +L +  A    GL  S R IT+ST G VP I R+ G  + V L
Sbjct: 205 VFMGMGEPLANYATVVAALRVLTAPPPAGLGLSARSITVSTVGLVPAIRRLAGAGLPVTL 264

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ LVP+NR++P+  ++ A   Y   +  RR++ EY ++  +ND P  A
Sbjct: 265 AVSLHAPDDELRDSLVPVNRRWPVAEVLTAAWEY-AETTGRRVSIEYALIDDVNDQPERA 323

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L  +L G  A +NLIP NP  G  +  S+++    F   ++  G ++ +R  RG DI 
Sbjct: 324 DALADLLVGRLAHVNLIPLNPTRGVSWQASERRREREFVRRLRLRGITATVRDTRGRDIA 383

Query: 360 AACGQLKS 367
           AACGQL +
Sbjct: 384 AACGQLAA 391


>gi|227543228|ref|ZP_03973277.1| possible Fe-S-cluster redox protein [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181037|gb|EEI62009.1| possible Fe-S-cluster redox protein [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 398

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 194/381 (50%), Gaps = 38/381 (9%)

Query: 14  REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73
           ++E  E L ++G+P    + R +QI +  Y R   D   M+D+ + VR  + +    ++P
Sbjct: 30  KDERIEILKELGLP----KFRDNQIARHYYGRFEADPGLMTDLPESVRTTVGEK---LFP 82

Query: 74  EI---VDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           ++   V E  + DG T+K L +     +     +E+V +    R TLC+SSQ GC + C 
Sbjct: 83  QLMSPVRETSADDGKTQKMLWKLHDGTL-----LESVLMEYPDRATLCISSQAGCGMACP 137

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG   L RNL+  EI+ QV  A                 + + G ++SNIV MGMGE
Sbjct: 138 FCATGQGGLDRNLSTGEIVDQVRAA--------------AATMQAKGGRLSNIVFMGMGE 183

Query: 190 PLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           PL N++ V  ++         G   S+R ITLST G  P I R   E +   LA+SLH  
Sbjct: 184 PLANYNRVLSAIRQITQPSPEGFGISQRGITLSTVGLAPAIRRFAAEGLSCRLAVSLHTP 243

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++LR+ LVP N ++ +  ++DA R Y   S  RR++ EY +++ IND P  A  L K L
Sbjct: 244 DDELRDSLVPANNRWSIAEVLDAAREYAEAS-GRRVSIEYALIRDINDQPWRADLLGKKL 302

Query: 307 KGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            G       +NLIP NP PG ++  S ++    F + +   G +  +R  RG +I AACG
Sbjct: 303 HGALGSKVHVNLIPLNPTPGSKWDASPKRVQDEFQKRVIARGVTCTVRDTRGQEIAAACG 362

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QL +  +R     R+  + T 
Sbjct: 363 QLAA-EERTGAAARRAKEATA 382


>gi|283456084|ref|YP_003360648.1| radical SAM family enzyme [Bifidobacterium dentium Bd1]
 gi|283102718|gb|ADB09824.1| Radical SAM family enzyme [Bifidobacterium dentium Bd1]
          Length = 389

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 192/358 (53%), Gaps = 30/358 (8%)

Query: 23  KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE---K 79
           ++G+P    R R  Q+    Y     D +  SD     R    + F   +P ++ E   +
Sbjct: 53  ELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAEAAEAF---FPTLITEVTRQ 105

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
           ++ +GT    ++   R   G + IE+V +   +R TLC+SSQVGC + C FC TG   L 
Sbjct: 106 VADEGT---TIKTLWRLFDGSL-IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLT 161

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RN++A EI+ QV +A   + D        G V    GR +SNIV MGMGEP+ N+ +V  
Sbjct: 162 RNMSAGEIVEQVRVAAKAMRD--------GEVAGGPGR-LSNIVFMGMGEPMGNYRSVLS 212

Query: 200 SLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVP 256
           ++    A    G   S R IT+ST G VP I ++  E I V LA+SLHA S++LR+ LVP
Sbjct: 213 AVRQISAMPPEGFVISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVP 272

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKI 313
           +N+++    ++DA   Y  L++ RR++ EY +++GIND    A  L K L       A +
Sbjct: 273 MNKRFDTTQVLDAAHDY-YLASKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHV 331

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           N IP NP  G ++  S  +D   F + + ++G ++ +R  RG DI  ACGQL +  ++
Sbjct: 332 NPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQDIDGACGQLAAKERQ 389


>gi|256370982|ref|YP_003108806.1| radical SAM enzyme, Cfr family [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007566|gb|ACU53133.1| radical SAM enzyme, Cfr family [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 353

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 185/353 (52%), Gaps = 28/353 (7%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           EL+ A ++  +P    R+   Q++  +Y  G R  + +S +   +R  L  H      E 
Sbjct: 6   ELDRAAVRALVPWPDWRI--EQLFHGLYHEGQR-LEAISTLPARMRAELASHLDPGLTER 62

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
             E      T K+ L      +     +ETV +    R ++CVSSQ GC++ C FC TG 
Sbjct: 63  RREHADDGETVKFALEAADGAL-----VETVVMQSARRISVCVSSQAGCAMGCRFCATGQ 117

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
              VR+L   EI+ Q+ +A+               V P   R+++++V MGMGEPL N  
Sbjct: 118 AGFVRHLGVGEIVEQLAIAQR-------------SVRP---RRLTHVVFMGMGEPLANAS 161

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNIL 254
              +++       G+S   RR+T+ST G VP I R+   ++GV LA+SLHA ++  R+ L
Sbjct: 162 VAIEAIRRIRADFGIS--PRRVTVSTVGIVPGIRRLAHADLGVTLAVSLHAANDAARSDL 219

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
           VP+NR+Y ++ ++DA + +  L+  RR+T E+ ++ G+ND  RDA  L    + + A +N
Sbjct: 220 VPMNRRYGIDAVLDAAQEFSELTG-RRVTLEWALIAGVNDRDRDATELAGHARRLAAHVN 278

Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           LIP NP PG   + +D   +  F+  ++  G +  +R  RG  I AACGQL +
Sbjct: 279 LIPLNPTPGYPMVGTDPDGVARFARRLRSLGVNVTVRDTRGRSIDAACGQLAA 331


>gi|23335166|ref|ZP_00120404.1| COG0820: Predicted Fe-S-cluster redox enzyme [Bifidobacterium
           longum DJO10A]
 gi|189439272|ref|YP_001954353.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
           longum DJO10A]
 gi|322689304|ref|YP_004209038.1| hypothetical protein BLIF_1118 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|189427707|gb|ACD97855.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum
           DJO10A]
 gi|320460640|dbj|BAJ71260.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 389

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 158/271 (58%), Gaps = 16/271 (5%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE+V +   +R TLC+SSQVGC + C FC TG   L RN++  EI+ QV +A  ++ D  
Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220
                 G V    GR +SNIV MGMGEP+ N+++V  ++    A    G   S R IT+S
Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236

Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T G VP I ++  E I V LA+SLHA S++LR+ LVP+N+++    ++DA   Y  L++ 
Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTAQVLDAAHDY-WLASK 295

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336
           RR++ EY +++GIND    A  L K L       A +N IP NP  G ++  S  +D   
Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F E + R+G ++ +R  RG DI  ACGQL +
Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386


>gi|311898630|dbj|BAJ31038.1| hypothetical protein KSE_52620 [Kitasatospora setae KM-6054]
          Length = 366

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/359 (33%), Positives = 188/359 (52%), Gaps = 29/359 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E +EA+ ++G        R  Q+    + R   D +  +DI    R  L +    + PE+
Sbjct: 28  ERKEAVAELG----EQPFRAKQLSNHYFGRMSADPESWTDIPAASRTKLTE---ALLPEL 80

Query: 76  --VDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
             V   +SCD   TRK L +       G + +E+V +    R T+C+SSQ GC + C FC
Sbjct: 81  MSVVRHVSCDDDATRKTLWKL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFC 135

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   L RNL+  EI+ Q+           G  D+    +P    ++SN+V MGMGEPL
Sbjct: 136 ATGQAGLTRNLSTAEIVEQIA---------SGMRDLRTGAVPGGEARLSNVVFMGMGEPL 186

Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
            N++ V  ++   +D    G   S+R IT+ST G VP + R  +E +   LA+SLHA  +
Sbjct: 187 ANYNRVLSAIRRLTDPSPDGFGLSQRGITVSTVGLVPAMHRFADEGLSCRLALSLHAPDD 246

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           +LR+ LVP+N ++ ++ ++DA  +Y   S  RR++ EY ++K IND    A  L ++++ 
Sbjct: 247 ELRDELVPVNTRWKVDEVLDAAWNYAEKS-GRRVSIEYALIKDINDQAWRADLLGRLIRN 305

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
               +NLIP NP PG ++  S  +D   F   ++  G  + +R  RG +I  ACGQL +
Sbjct: 306 RRVHVNLIPLNPTPGSKWTASRPEDEREFVRRLQAHGVPTTVRDTRGQEIDGACGQLAA 364


>gi|194336581|ref|YP_002018375.1| radical SAM enzyme, Cfr family [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|254807191|sp|B4SA62|RLMN_PELPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|194309058|gb|ACF43758.1| radical SAM enzyme, Cfr family [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 359

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 200/382 (52%), Gaps = 38/382 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +++++  +   EL++AL  +G P      R +QI +W++      F+ M+ +S  +R  L
Sbjct: 4   QQQNITDLTLTELQQALSLLGEPA----FRATQIHQWLFSHHAASFEEMTILSLALRKKL 59

Query: 65  NQHFSII------YPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
           ++ FSI       + E  +E   C+  T K LL    +       +E+V I  ++R T C
Sbjct: 60  SESFSIHPLKRVEHQECFEE--DCESPTEKILLELQDKS-----RVESVLIATENRRTAC 112

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQ+GC L C FC TG     RNLTA EI  Q+     L+G                G+
Sbjct: 113 VSSQIGCPLQCPFCATGQMGFRRNLTAGEITGQIYALNELVG------------AKEPGK 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235
            ++NIV MGMGEPL N  NV +++ ++++ +     S++RIT+ST G +P I R+G+  +
Sbjct: 161 SLTNIVFMGMGEPLLNTGNVIEAIETLSTRNYRFCLSQKRITISTVGVIPEIQRLGKSGM 220

Query: 236 GVMLAISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              LA+SLHA     R  L+PI +R+YPL+ L  A   Y   S    +T  Y++LKGIND
Sbjct: 221 KTKLAVSLHAADQQKRESLMPIASRQYPLKELGTALSEYTQ-STGMPVTIVYLLLKGIND 279

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSSPIRT 352
           S  DA  L +  K    KINLI +N     ++  + S  +D+  F + +  SG    IR 
Sbjct: 280 SLDDAKMLARFSKTFLCKINLIDYNSIINIKFKPVYSATRDM--FQQYLINSGLHVTIRK 337

Query: 353 PRGLDILAACGQLKSLSKRIPK 374
             G  I AACGQL + S + P+
Sbjct: 338 SYGTTINAACGQLATASMQNPQ 359


>gi|256379897|ref|YP_003103557.1| ribosomal RNA large subunit methyltransferase N [Actinosynnema
           mirum DSM 43827]
 gi|255924200|gb|ACU39711.1| radical SAM enzyme, Cfr family [Actinosynnema mirum DSM 43827]
          Length = 368

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 188/371 (50%), Gaps = 26/371 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH- 62
           L    L  +  E+  EA+  +G        R +Q+    + R   D   M+DI    R  
Sbjct: 15  LPPRHLADLTAEQRREAVASLG----EQPFRANQLSNHYFGRLTVDPDAMTDIPAAAREK 70

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L+      ++ E+   +     TRK LLR     +     +E+V +    R TLC+SSQ 
Sbjct: 71  LVGDLMPPLWTEVRSVEADAGTTRKTLLRAHDGTL-----VESVLMRYPDRATLCISSQA 125

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV    + + D          ++P    ++SNI
Sbjct: 126 GCGMACPFCATGQGGLQRNLSTAEIVDQVRRGAAAMRDG---------LLPGGPGRLSNI 176

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V +++    D    GL  S+R +T+ST G VP I ++ EE + V L
Sbjct: 177 VFMGMGEPLANYKRVIEAVHRICDPAPAGLGISQRSVTVSTVGLVPAIRKLTEENLQVRL 236

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ +  +++A R Y   +  RR++ EY +++ IND    A
Sbjct: 237 AVSLHTPDDELRDTLVPVNTRWKVAEVMEAARGYADRTG-RRVSIEYALIRDINDQGWRA 295

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K+L+   G    +NLIP NP PG ++  S +     F   +K  G    +R  RG 
Sbjct: 296 DMLGKLLRRHLGPLVHVNLIPLNPTPGSKWDASPKPVEREFVRRVKEQGVECTVRDTRGQ 355

Query: 357 DILAACGQLKS 367
           +I AACGQL +
Sbjct: 356 EIAAACGQLAA 366


>gi|193212778|ref|YP_001998731.1| ribosomal RNA large subunit methyltransferase N [Chlorobaculum
           parvum NCIB 8327]
 gi|193086255|gb|ACF11531.1| radical SAM enzyme, Cfr family [Chlorobaculum parvum NCIB 8327]
          Length = 374

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 182/367 (49%), Gaps = 35/367 (9%)

Query: 14  REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73
           R+ELE  + ++G P    R    Q+ +W+Y      F+ M+   +++R  L   ++I  P
Sbjct: 25  RQELEHLMQRLGQPAYRAR----QLHQWLYSHQALSFEDMTSFGKKLREQLAGSWAI-RP 79

Query: 74  EIVD----EKISCDG-----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +D    E   C       T K+L++     +   V IE+V IP + R T C+SSQVGC
Sbjct: 80  ATLDATETEPAQCAAPGAIPTSKFLVK-----LDDGVLIESVLIPSEERMTACISSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG     R+L A EI  QV L             ++       GR I+N V 
Sbjct: 135 ALRCTFCATGQMGFKRDLVAPEITDQVFL-------------LQQEAHRLYGRGITNTVF 181

Query: 185 MGMGEPLCNFDNVKKSLS-IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           MGMGEPL N DNV +S+S +       S S+R+IT+ST G VP I R+    +   LAIS
Sbjct: 182 MGMGEPLLNLDNVFESISTLTEQEYRFSISERKITISTVGLVPEIGRIATSGLKTKLAIS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+     R  ++P+   YPL+ L  A   Y      + +T  Y++L+GIND+P DA  L
Sbjct: 242 LHSADQATRERMMPVAADYPLDELSRAISAY-NTKTGQPVTLVYMLLEGINDAPEDARKL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +  K    KINLI +N     ++          F E +  +G    +R  +G  I AAC
Sbjct: 301 ARFAKRGLCKINLIDYNAIVNLKFRPGYGSAKSMFIERLLDAGLHVTVRKSQGATINAAC 360

Query: 363 GQLKSLS 369
           GQL + S
Sbjct: 361 GQLATRS 367


>gi|302800564|ref|XP_002982039.1| hypothetical protein SELMODRAFT_179299 [Selaginella moellendorffii]
 gi|300150055|gb|EFJ16707.1| hypothetical protein SELMODRAFT_179299 [Selaginella moellendorffii]
          Length = 425

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 199/373 (53%), Gaps = 38/373 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67
           L+G   +EL++   ++G      R R  Q++  +Y     + Q  +++S+  R  L+++ 
Sbjct: 73  LLGKSEKELQDLCEEMG----EKRFRGKQMYLLLYKVRKAEIQEFTNLSKGFREKLISEG 128

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP---EKSRGTLCVSSQVGC 124
           + +    I  +  S DGT K LL+     +     IETV IP   E +R T+CVSSQVGC
Sbjct: 129 WEVGRSPIHHKVNSVDGTIKVLLKLKDSRL-----IETVGIPADEENNRLTVCVSSQVGC 183

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC TG     R+L   EI+ QVL+   +                   +++SN+V 
Sbjct: 184 PLRCAFCATGKGGFTRSLKPHEIIEQVLVMEEIF-----------------KQRVSNVVF 226

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAIS 242
           MGMGEP+ N  +V  +    ++ +G+   +R IT+ST G VPN  R     ++   LA+S
Sbjct: 227 MGMGEPMLNMASVLAAHRCLNEDIGI--GQRMITISTVG-VPNSIRKLAAHKLQSTLAVS 283

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +  LR  +VP  + YPL+ L++ C+ Y  ++  RR++FEY +L G+NDS   A  L
Sbjct: 284 LHAPNQRLREQIVPSAKSYPLDALMEDCKEYFSIT-GRRVSFEYTLLAGVNDSKELAFEL 342

Query: 303 IKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++L    +   +NLIP+NP     +    QK + TF E + +   ++ +R  RGLD  A
Sbjct: 343 GELLHHWDMSHHVNLIPYNPVADSLFQRPWQKSVQTFVETLAKCRVNASVRQTRGLDANA 402

Query: 361 ACGQLKSLSKRIP 373
           ACGQL++  ++ P
Sbjct: 403 ACGQLRNQFQKTP 415


>gi|291456892|ref|ZP_06596282.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213]
 gi|291382169|gb|EFE89687.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213]
          Length = 389

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 158/271 (58%), Gaps = 16/271 (5%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE+V +   +R TLC+SSQVGC + C FC TG   L RN++  EI+ QV +A  ++ D  
Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIVEQVRVAAKMMRD-- 183

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220
                 G V    GR +SNIV MGMGEP+ N+++V  ++    A    G   S R IT+S
Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236

Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T G VP I ++  E I V LA+SLHA S++LR+ LVP+N+++    ++DA   Y  L++ 
Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDY-WLASK 295

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336
           RR++ EY +++GIND    A  L K L       A +N IP NP  G ++  S  +D   
Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEKQ 355

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F E + R+G ++ +R  RG DI  ACGQL +
Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386


>gi|225352146|ref|ZP_03743169.1| hypothetical protein BIFPSEUDO_03761 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157393|gb|EEG70732.1| hypothetical protein BIFPSEUDO_03761 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 393

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 158/271 (58%), Gaps = 16/271 (5%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE+V +   +R TLC+SSQVGC + C FC TG   L RN++A EIL QV +A   + D  
Sbjct: 129 IESVLMRYPTRTTLCISSQVGCGMGCPFCATGQLGLTRNMSAGEILEQVRVAAKAMHD-- 186

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220
                 G V   +GR +SNIV MGMGEP+ N+ +V  ++    A    G   S R IT+S
Sbjct: 187 ------GEVAGGLGR-LSNIVFMGMGEPMGNYKSVLSAVRQISAMPPEGFGISARNITVS 239

Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T G VP I ++  E I V LA+SLHA S++LR+ LVP+N+++    ++DA   Y  L++ 
Sbjct: 240 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYY-LASK 298

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336
           RR++ EY +++GIND    A  L K L       A +N IP NP  G ++  S  +D   
Sbjct: 299 RRVSIEYALMRGINDQAEHAKLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQQ 358

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F + + ++G ++ +R  RG DI  ACGQL +
Sbjct: 359 FLDILHKAGITATLRDTRGQDIDGACGQLAA 389


>gi|325001872|ref|ZP_08122984.1| ribosomal RNA large subunit methyltransferase N [Pseudonocardia sp.
           P1]
          Length = 369

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 189/358 (52%), Gaps = 39/358 (10%)

Query: 23  KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD---EK 79
           ++G+P    + R  Q+ +  + R   D + MSD+  + R    Q  + + P +V    EK
Sbjct: 34  ELGLP----KFRLDQLARHYFGRLTADVEEMSDLGADAR----QRLAALLPPLVTPLTEK 85

Query: 80  ISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138
              DG TRK L R     +      E+V +    R T+C+SSQ GC + C FC TG   L
Sbjct: 86  ACDDGATRKTLWRGHDGVLA-----ESVLMRYPDRATVCISSQAGCGMACPFCATGQGGL 140

Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN-- 196
            RNL+  EI+ QV  A +   D  G  D           ++SN+V MGMGEPL N+    
Sbjct: 141 QRNLSTGEIVDQVRRAAAAARD--GALDEPA--------RLSNVVFMGMGEPLANYKRVV 190

Query: 197 --VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
             V++  S A D  G+  S R +T+ST G VP I R+ EE + V LAISLH   ++LR+ 
Sbjct: 191 AAVRRITSPAPDGFGI--SARGVTVSTVGLVPAIDRLREEGVPVTLAISLHCPDDELRDT 248

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIP 310
           LVP+N ++ +  ++DA R Y   +  RR++ EY +++ +ND P  A  L K+L+   G  
Sbjct: 249 LVPVNNRWKVSEVLDAGRRY-ATTTGRRVSIEYALIRDVNDQPWRADMLGKVLRQHIGTS 307

Query: 311 -AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
              +NLIP NP PG E+  S +     F   ++ +G +  +R  RG +I AACGQL +
Sbjct: 308 RVHVNLIPLNPTPGSEWDASPKPVEEEFVRRVRATGVACTVRDTRGQEIDAACGQLAA 365


>gi|297562607|ref|YP_003681581.1| radical SAM enzyme, Cfr family [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847055|gb|ADH69075.1| radical SAM enzyme, Cfr family [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 365

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/342 (37%), Positives = 185/342 (54%), Gaps = 25/342 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDG--TRKW 88
            R  Q+ +  +   + D   M+D+    R  L +    +++ P      I+CD   TRK 
Sbjct: 39  FRAKQLAQHYFGSLVSDTSAMTDLPASSRERLGEALLPTLLTPV---RHITCDNGMTRKT 95

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L +       G V  E+V +    R TLC+SSQ GC + C FC TG   L RNL+  EI+
Sbjct: 96  LWK----AFDG-VLFESVLMRYPDRVTLCISSQAGCGMNCPFCATGQAGLTRNLSTGEII 150

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            QV+ +   L +        G V    GR ISNIV MGMGEP+ N+  V +S+   +D +
Sbjct: 151 DQVVASARDLAN--------GEVAGGPGR-ISNIVFMGMGEPMANYKRVLQSVRRITDPV 201

Query: 209 --GLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             GL  S+R +T+ST G VP I + + E + V LAISLHA  ++LR+ LVPIN ++ ++ 
Sbjct: 202 PNGLGISQRGVTVSTVGLVPAINKLIDERMQVRLAISLHAPDDELRDELVPINTRWKVDE 261

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           ++DA   Y G +  RR++ EY ++K IND    A  L K+LKG    +NLIP NP PG +
Sbjct: 262 VLDAAWRYAG-TTGRRVSIEYALIKDINDQAWRADLLGKLLKGHLVHVNLIPLNPTPGSK 320

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +  S  +D   F   ++  G +  +R  RG +I  ACGQL +
Sbjct: 321 WTASRPEDEREFVRRLESHGVAVTVRDTRGQEIDGACGQLAA 362


>gi|302525208|ref|ZP_07277550.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           AA4]
 gi|302434103|gb|EFL05919.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           AA4]
          Length = 368

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 191/376 (50%), Gaps = 36/376 (9%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L    L  +   E  EA++++G        R  Q+    + R   D   M+DI    R  
Sbjct: 15  LPPRHLADLTVAERAEAVVELG----EKAFRAKQLSNHYFSRLTVDPAEMTDIPAASREK 70

Query: 64  LNQHFSIIYPEIVDE--KISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           L    + + P ++ E   ++ DG  TRK L R     +     +E+V +    R TLC+S
Sbjct: 71  L---VADLMPPLLTEVRALAADGGATRKTLWRAHDGTL-----LESVLMRYPDRATLCIS 122

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGR 177
           SQ GC + C FC TG   L RNL+  EI+ QV  A +++  G  PG              
Sbjct: 123 SQAGCGMACPFCATGQGGLDRNLSTAEIVDQVRDAAAVMRDGSMPGGPG----------- 171

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE- 234
           ++SNIV MGMGEPL N+  V  ++   +D    GL   +R +T+ST G  P I ++ +E 
Sbjct: 172 RLSNIVFMGMGEPLANYKRVVAAVRRITDPSPAGLGIGQRSVTVSTVGLAPAIRKLADEK 231

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           + V LA+SLH   ++LR+ LVP+N ++ ++ ++ A R+Y   S  RR++ EY +++ IND
Sbjct: 232 MQVRLAVSLHTPDDELRDTLVPVNNRWSVDEVLSAARYYADTSG-RRVSIEYALIRDIND 290

Query: 295 SPRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
            P  A  L K L+   G    +N+IP NP PG ++  S +     F   +   G +  +R
Sbjct: 291 QPWRAELLAKRLRKHLGQLVHVNVIPLNPTPGSKWDASPKPVEREFVRLVNAGGVACTVR 350

Query: 352 TPRGLDILAACGQLKS 367
             RG DI AACGQL +
Sbjct: 351 DTRGQDIAAACGQLAA 366


>gi|319948052|ref|ZP_08022226.1| ribosomal RNA large subunit methyltransferase N [Dietzia cinnamea
           P4]
 gi|319438291|gb|EFV93237.1| ribosomal RNA large subunit methyltransferase N [Dietzia cinnamea
           P4]
          Length = 369

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 189/358 (52%), Gaps = 32/358 (8%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE- 78
           A+  +G+P      R  Q+    + R   D + M+D+  ++R  + Q    ++P +    
Sbjct: 32  AMGDLGVPS----FRGKQLANQYFGRLEADPREMTDLPADLRDRVGQE---LFPPLTTSL 84

Query: 79  -KISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
             +S D   TRK L +     +     +E+V +    R T+C+SSQ GC + C FC TG 
Sbjct: 85  RHVSADEGTTRKTLWKLHDGSL-----VESVLMRYPDRATVCISSQAGCGMACPFCATGQ 139

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             L RNL+  EIL QV +A   L D           IP    ++SN+V MGMGEPL N+ 
Sbjct: 140 GGLQRNLSTAEILEQVRVAARALRDG---------EIPGGPGRLSNVVFMGMGEPLANYK 190

Query: 196 NVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            V  ++   I+    G   S+R +T+ST G VP I ++ EE + V LA+SLH   ++LR+
Sbjct: 191 RVLAAVRGIISPPPSGFGLSQRSVTVSTVGVVPAIHKLAEEGLQVTLAVSLHTPDDELRD 250

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GI 309
            LVP+N ++P+  ++DA RHY   +  RR++ EY +++ +ND       L ++L    G 
Sbjct: 251 TLVPVNNRWPVTEVMDAARHY-ADATGRRVSIEYALIRDVNDQVWRGEMLGRLLAQRLGP 309

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            A +NLIP NP PG E+  S +     F   ++ +G S  +R  RG DI AACGQL +
Sbjct: 310 MAHVNLIPLNPTPGSEWDASPRHQQDAFVAAVRAAGVSCTVRDTRGSDIDAACGQLAA 367


>gi|294790917|ref|ZP_06756075.1| radical SAM enzyme, Cfr family [Scardovia inopinata F0304]
 gi|294458814|gb|EFG27167.1| radical SAM enzyme, Cfr family [Scardovia inopinata F0304]
          Length = 424

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 193/368 (52%), Gaps = 37/368 (10%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--S 69
           M +EE   A+ K+G P      R  Q+ +  +    R+    SD  Q+   ++   F  S
Sbjct: 59  MDQEERAAAMAKLGYPS----FRVKQLGQHYFAHYNREVSSYSDFPQQQAQVVENTFFPS 114

Query: 70  IIYPEIVDEKISCDGTRK--WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           +I P + +++     T K  W L   +R       IE+V +   +R TLC+SSQVGC + 
Sbjct: 115 LIRP-LAEQEADQGTTVKTLWGLFDGSR-------IESVLMKYPTRTTLCISSQVGCGMG 166

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG   L RN++A EIL QV  A     D         +  PS   ++SN+V MGM
Sbjct: 167 CPFCATGKLGLTRNMSAGEILEQVRYAARQARD-------GRLGQPS---RLSNVVFMGM 216

Query: 188 GEPLCNFDNVKKSL----SIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242
           GE L N+  + K++    ++  D  G+  S R IT+ST G VP I R+  E I V LA+S
Sbjct: 217 GEALGNYKAMMKAIRQISALPPDGFGI--SARNITVSTVGIVPGIRRLMTEGIPVRLAVS 274

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA S+ LR+ LVP+N+++ +  ++DA   Y  ++  RR++ EY ++KGIND  + A  L
Sbjct: 275 LHAPSDSLRDELVPMNKRFAISQVLDAAHDY-YVATKRRVSIEYALMKGINDQAQHARLL 333

Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K L         +N IP NP  G  +  S  +D   F + + ++G ++ +R  RG DI 
Sbjct: 334 AKRLNHYGDDWVHVNPIPLNPIEGSRWTASKPEDEKRFLDILHQAGIAATLRDTRGSDID 393

Query: 360 AACGQLKS 367
            ACGQL +
Sbjct: 394 GACGQLAA 401


>gi|258652388|ref|YP_003201544.1| ribosomal RNA large subunit methyltransferase N [Nakamurella
           multipartita DSM 44233]
 gi|258555613|gb|ACV78555.1| radical SAM enzyme, Cfr family [Nakamurella multipartita DSM 44233]
          Length = 372

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 180/345 (52%), Gaps = 29/345 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE--KISCD--GTRKW 88
            R  Q+    +    RD   M+D+    R    +    + PE++ E   ++CD   TRK 
Sbjct: 41  FRAKQLAHHYFAGLTRDAAEMTDLPAAGR---AEFVDALLPELLTEVRSLACDDGSTRKT 97

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R     +     IE+V +    R TLCVSSQ GC + C FC TG   L RNL+  EI+
Sbjct: 98  LWRAHDGTL-----IESVLMRYPDRITLCVSSQAGCGMACPFCATGQGGLQRNLSTGEIV 152

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASD 206
            QV LA  +  D  G     G        ++SN+V MGMGEPL N++ V +++    A  
Sbjct: 153 EQVRLAARMARD--GALGEPG--------RLSNVVFMGMGEPLANYNRVLEAVRAITAPA 202

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             GL  S R +T+ST G VP I R+ EE + V LA+SLH   ++LR+ LVP+N ++ +  
Sbjct: 203 PSGLGISARSVTVSTVGLVPAIRRLTEEKLQVRLAVSLHTPDDELRDTLVPVNERWKVAE 262

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWP 322
           ++ A R Y   +  RR++ EY +++ IND P  A  L  +L+   G    +NLIP NP P
Sbjct: 263 VLAAAREYAD-TTGRRVSIEYALIRDINDQPWRADLLGSLLREHLGPLVHVNLIPLNPTP 321

Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G ++  S +     F   ++  G +  +R  RG +I AACGQL +
Sbjct: 322 GSQWDASPRPVQDEFVRRVRAQGVACTVRDTRGQEIAAACGQLAA 366


>gi|296454242|ref|YP_003661385.1| Cfr family radical SAM enzyme [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183673|gb|ADH00555.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 389

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 157/271 (57%), Gaps = 16/271 (5%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE+V +   +R TLC+SSQVGC + C FC TG   L RN++  EI+ QV +A  ++ D  
Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220
                 G V    GR +SNIV MGMGEP+ N+++V  ++    A    G   S R IT+S
Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236

Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T G VP I ++  E I V LA+SLHA S++LR+ LVP+N+++    ++DA   Y  L++ 
Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDY-WLASK 295

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336
           RR++ EY +++GIND    A  L K L       A +N IP NP  G ++  S   D   
Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPGDEQR 355

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F E + R+G ++ +R  RG DI  ACGQL +
Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386


>gi|225388237|ref|ZP_03757961.1| hypothetical protein CLOSTASPAR_01972 [Clostridium asparagiforme
           DSM 15981]
 gi|225045705|gb|EEG55951.1| hypothetical protein CLOSTASPAR_01972 [Clostridium asparagiforme
           DSM 15981]
          Length = 304

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/273 (37%), Positives = 149/273 (54%), Gaps = 23/273 (8%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IETV+I  +  GT+CVS+QVGC + C FC +G    VRNLT+ EI+ Q++L R       
Sbjct: 53  IETVFIKRRDGGTVCVSTQVGCPVGCIFCESGRNGFVRNLTSSEIVQQIILLR------- 105

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         RK++ IV MGMGEPL N+DN+ K++ I  D  GL+F    IT+ST 
Sbjct: 106 --------------RKVNRIVFMGMGEPLFNYDNLIKAIHILRDRYGLNFPTDGITISTV 151

Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G V  + ++ EE + + L ISLHA +   RN ++P  R Y +E ++     Y    N R+
Sbjct: 152 GPVDQLKKLREEHLKIQLTISLHAATQSARNRIIPHMRIYAIEDVVKQALSYSERHN-RK 210

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           I F Y++L GIND P D   L K  +G    IN++ +NP          +++IV F   +
Sbjct: 211 IVFAYLLLPGINDRPSDVRQLAKWFRGKKVMINVLQYNPTSNSRIKAPQKREIVAFKHQL 270

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374
           +++G    +R   G +I AACGQL +   +  K
Sbjct: 271 EQAGLEVTMRVSHGREINAACGQLANTYNKFKK 303


>gi|117928743|ref|YP_873294.1| radical SAM protein [Acidothermus cellulolyticus 11B]
 gi|205829702|sp|A0LV48|RLMN_ACIC1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|117649206|gb|ABK53308.1| 23S rRNA m(2)A-2503 methyltransferase [Acidothermus cellulolyticus
           11B]
          Length = 430

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 161/295 (54%), Gaps = 33/295 (11%)

Query: 89  LLRFPAR-----CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
           L+R+P R      +G   E +        R TLCVSSQ GC + C FC TG   LVRNL+
Sbjct: 128 LMRYPPRHSRHAALG--AEADADGGSRHGRVTLCVSSQAGCGMGCPFCATGQAGLVRNLS 185

Query: 144 AEEILLQV-----LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198
           A EI+ QV      +AR  +   PG              ++SN+V MGMGEPL N+ +V 
Sbjct: 186 AAEIVAQVAVAARTVARGEMAGGPG--------------RLSNVVFMGMGEPLANYRSVV 231

Query: 199 KSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255
            ++   ++    GL  S+R +T+ST G VP I R+  E + V LA+SLHA  ++LRN+LV
Sbjct: 232 DAVRRITEPPPEGLGISQRSVTVSTVGLVPAIERLATEGLAVTLAVSLHAPDDELRNVLV 291

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP--RDALNL-IKILKGIPAK 312
           PINR++P+  ++ A   Y  ++  RR++ EY +++ +ND P   DAL   +K   G    
Sbjct: 292 PINRRWPVRDVLGAAARYAEVTK-RRVSVEYALIRDVNDQPWRADALAAQVKEFLGRLGH 350

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +NLIP NP PG  +  S  +    F   +  +G +  +R  RG ++  ACGQL +
Sbjct: 351 VNLIPLNPTPGSPWTASTPRAQAEFVRRLAAAGVTVTVRDTRGREVNGACGQLAA 405


>gi|237785746|ref|YP_002906451.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758658|gb|ACR17908.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 394

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 189/366 (51%), Gaps = 32/366 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +E ++A+  +G+P      R +Q+ +  Y R     + M+D+    R  + +    ++PE
Sbjct: 49  DEQKQAVKDLGLPA----FRANQLARHYYGRFEASPETMTDLPAAAREPVQK---ALFPE 101

Query: 75  IVDE--KISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
           ++ E   ISCD   TRK L +     +     +E+V +    R TLC+SSQ GC + C F
Sbjct: 102 LMTEVRNISCDQGMTRKTLWKLHDGTL-----LESVLMRYPGRATLCISSQAGCGMACPF 156

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TG   L RNL+  EI+ QV  A + +          G V    GR +SN+V MGMGEP
Sbjct: 157 CATGQGGLHRNLSTGEIVDQVRAAAAAMS--------RGDVAGGKGR-LSNVVFMGMGEP 207

Query: 191 LCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           L N+  V  ++   +D    G   S+R +T+S+ G  P I R  +E + V LA+SLH   
Sbjct: 208 LANYKRVVSAVRQITDPSPRGFGLSQRNVTVSSVGLAPAIRRFADEGLSVTLAVSLHTPD 267

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA---LNLIK 304
           ++LR+ LVP+N ++ +E ++DA  +Y   S  RR++ EY +++ +ND    A      +K
Sbjct: 268 DELRDSLVPVNNRWSVEEVLDAAAYYADRS-GRRVSIEYALIRDVNDQGWRADLLGKKLK 326

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
                   +N+IP NP PG  +  S ++    F   +K  G    +R  RG +I AACGQ
Sbjct: 327 KALHSKVHVNVIPLNPTPGSIWDASTKQQQEEFVRRVKTQGVECTVRDTRGQEIAAACGQ 386

Query: 365 LKSLSK 370
           L +  K
Sbjct: 387 LAAEEK 392


>gi|296129336|ref|YP_003636586.1| radical SAM enzyme, Cfr family [Cellulomonas flavigena DSM 20109]
 gi|296021151|gb|ADG74387.1| radical SAM enzyme, Cfr family [Cellulomonas flavigena DSM 20109]
          Length = 375

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 178/343 (51%), Gaps = 24/343 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+    +     D   M+D+ +  R  L    + ++PE++    +        ++ 
Sbjct: 45  FRAKQLATHYFTHLTSDADAMTDLPKASRDTL---VADLFPELLTTSRTLTADHGTTVKT 101

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++E+V +   +R TLCVSSQ GC L CSFC TG   L+RNL+  EI+ QV 
Sbjct: 102 LYHLFDG-AKVESVLMRYANRTTLCVSSQAGCGLACSFCATGKMGLLRNLSTAEIVEQVR 160

Query: 153 LARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSM 208
            A   L  GD PG         P+   ++SN+V MGMGEPL N+  V  ++   +A    
Sbjct: 161 QAARALADGDVPGG--------PT---RLSNVVFMGMGEPLANYKAVMATVRRLVAPAPD 209

Query: 209 GLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           GL  S R +T+ST G VP + R+ GE I V LA+SLHA  ++LR+ LVP+N ++ ++  +
Sbjct: 210 GLGMSARNVTVSTVGLVPAMDRLAGEGIPVTLALSLHAPDDELRSELVPVNTRWSVDEAL 269

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSP--RDALNLIKILKGIP-AKINLIPFNPWPGC 324
           D+ R Y  ++  RR++ EY +++ +ND     D L    + +G      N IP NP PG 
Sbjct: 270 DSARRYFDVTG-RRVSIEYALIRDVNDHAWRADLLGEKLVARGTGWVHCNPIPLNPTPGS 328

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +  SD +    F   ++  G  + IR  RG DI  ACGQL +
Sbjct: 329 RWTASDPQVEAEFVARLRAHGVPTTIRDTRGSDIDGACGQLAA 371


>gi|224098427|ref|XP_002311170.1| predicted protein [Populus trichocarpa]
 gi|222850990|gb|EEE88537.1| predicted protein [Populus trichocarpa]
          Length = 441

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 193/385 (50%), Gaps = 33/385 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
           L+GM   EL++    +G        R  Q+   IY R +++ Q  S +    R+ L +  
Sbjct: 55  LLGMSEPELQQLATDLG----QQSYRGKQLHHLIYQRKVKEIQDFSQLPLVFRNDLQEAG 110

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRG----TLCVSSQV 122
           + +    I     + DGT K L+R     +     IETV IP E  +G    T CVSSQV
Sbjct: 111 WKVGRSPIFQTVTAADGTVKLLIRLEDNRL-----IETVGIPVEDEKGSMRLTACVSSQV 165

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS-------- 174
           GC L CSFC TG     RNL   EI+ Q  L  S  G    C  +   V+ +        
Sbjct: 166 GCPLRCSFCATGKGGFSRNLQRHEIVEQHRLGSS--GTTSTCSKLYLHVLYAQVLAVEEI 223

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VG 232
              +++N+V MGMGEP+ N  +V ++    +    +   +R IT+ST G VPN  +    
Sbjct: 224 FKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVG-VPNTIKKLAS 280

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
            ++   LA+SLHA +  LR  +VP  + YPL+ ++  C+ Y  L  +RR++FEY +L G+
Sbjct: 281 HKLQSTLALSLHAPNQKLRETIVPSAKSYPLDAIMKDCKEY-FLETSRRVSFEYALLAGV 339

Query: 293 NDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           ND    A  L ++L   G    +NLIPFNP  G +Y    +K I  F+  ++    +  +
Sbjct: 340 NDRVEHAKELAELLHQWGRGHHVNLIPFNPIQGSDYKRPHKKAIQAFAAVLESRKVTVSV 399

Query: 351 RTPRGLDILAACGQLKSLSKRIPKV 375
           R  RGLD  AACGQL++  ++ P V
Sbjct: 400 RQTRGLDASAACGQLRNEFQKSPLV 424


>gi|330685493|gb|EGG97146.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
           VCU121]
          Length = 278

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/293 (35%), Positives = 162/293 (55%), Gaps = 21/293 (7%)

Query: 26  IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGT 85
           I     + R  QI++W+Y + +     M+++S+++R LL  +F++     V ++ S DGT
Sbjct: 6   IEHGQQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLLKDNFAMTTLTTVVKQESRDGT 65

Query: 86  RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145
            K+L             IETV +  +   ++CV++QVGC + C+FC +    L RNL A 
Sbjct: 66  IKFLFELQ-----DGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAG 120

Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           EI+ QVL  +  L +                 ++S IV+MG+GEP  N+D +   L I +
Sbjct: 121 EIVSQVLTVQKALDE--------------TEERVSQIVIMGIGEPFENYDEMMDFLRIVN 166

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264
           D   L+   R IT+STSG +P I    EE I +  A+SLH   +++R+ L+PINR Y +E
Sbjct: 167 DDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSLHGAKDEVRSRLMPINRAYNVE 226

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
            L++A  +Y   +N RRITFEY +  G+ND    A +L  ++KG+   +NLIP
Sbjct: 227 KLMEAIEYYQEKTN-RRITFEYGLFGGVNDQLEHARDLAHLIKGLNCHVNLIP 278


>gi|296268984|ref|YP_003651616.1| radical SAM enzyme, Cfr family [Thermobispora bispora DSM 43833]
 gi|296091771|gb|ADG87723.1| radical SAM enzyme, Cfr family [Thermobispora bispora DSM 43833]
          Length = 388

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/347 (36%), Positives = 188/347 (54%), Gaps = 29/347 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDG--TRKW 88
            R  Q+ +  + R     + M+D+    R  L    S + P ++    +++CDG  TRK 
Sbjct: 54  FRADQLSRHYFGRLTASPEQMTDLPGGSRDRL---VSALLPPLLTPVRELACDGGTTRKT 110

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R       G + +E+V +    R T+CVSSQ GC + C FC TG   L RNL+  EI+
Sbjct: 111 LWRL----FDGAL-VESVLMRYPDRTTICVSSQAGCGMNCPFCATGQAGLTRNLSTAEIV 165

Query: 149 LQVLL-ARSLL-GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
            QV+  ARSL  G+ PG              +ISN+V MGMGEP+ N+  V  ++   + 
Sbjct: 166 EQVVAGARSLAKGEVPGGPG-----------RISNVVFMGMGEPMANYKAVVAAIRRLTS 214

Query: 207 SM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPL 263
            +  GL  S R IT+ST G VP I R+ +E + V LA+SLHA  ++LR+ LVPIN ++ +
Sbjct: 215 PVPEGLGISARGITVSTVGLVPAIERLAQEGLPVTLAVSLHAPDDELRDTLVPINTRWKV 274

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
             ++DA  +Y  ++  RR++ EY +++ IND    A  L ++L+G  A +NLIP NP PG
Sbjct: 275 AEVLDAAWNYAAVTK-RRVSIEYALIRDINDQEWRADLLGRLLQGRLAHVNLIPLNPTPG 333

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
             +  S  +D   F   ++  G    +R  RG +I  ACGQL +  +
Sbjct: 334 SPWTASRPRDERAFVRRLESYGIPVTVRDTRGREIDGACGQLAARDR 380


>gi|254976991|ref|ZP_05273463.1| hypothetical protein CdifQC_16843 [Clostridium difficile QCD-66c26]
 gi|255651909|ref|ZP_05398811.1| hypothetical protein CdifQCD_17123 [Clostridium difficile
           QCD-37x79]
 gi|260687131|ref|YP_003218265.1| hypothetical protein CDR20291_1774 [Clostridium difficile R20291]
 gi|293402444|ref|ZP_06646580.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|296450747|ref|ZP_06892500.1| cfr family radical SAM enzyme [Clostridium difficile NAP08]
 gi|306521660|ref|ZP_07408007.1| hypothetical protein CdifQ_19485 [Clostridium difficile QCD-32g58]
 gi|323485992|ref|ZP_08091323.1| cfr family radical SAM enzyme [Clostridium symbiosum WAL-14163]
 gi|323692843|ref|ZP_08107070.1| cfr family Radical SAM enzyme [Clostridium symbiosum WAL-14673]
 gi|332652412|ref|ZP_08418157.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16]
 gi|164512331|emb|CAO78566.2| hypothetical protein [Clostridium difficile]
 gi|260213148|emb|CBE04584.1| putative uncharacterized protein [Clostridium difficile R20291]
 gi|291304107|gb|EFE45360.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291541455|emb|CBL14565.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus bromii L2-63]
 gi|296260591|gb|EFH07433.1| cfr family radical SAM enzyme [Clostridium difficile NAP08]
 gi|323400559|gb|EGA92926.1| cfr family radical SAM enzyme [Clostridium symbiosum WAL-14163]
 gi|323503157|gb|EGB18992.1| cfr family Radical SAM enzyme [Clostridium symbiosum WAL-14673]
 gi|332517558|gb|EGJ47161.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16]
          Length = 327

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/273 (37%), Positives = 149/273 (54%), Gaps = 23/273 (8%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IETV+I  +  GT+CVS+QVGC + C FC +G    VRNLT+ EI+ Q++L R       
Sbjct: 76  IETVFIKRRDGGTVCVSTQVGCPVGCIFCESGRNGFVRNLTSSEIVQQIILLR------- 128

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         RK++ IV MGMGEPL N+DN+ K++ I  D  GL+F    IT+ST 
Sbjct: 129 --------------RKVNRIVFMGMGEPLFNYDNLIKAIHILRDRYGLNFPTDGITISTV 174

Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G V  + ++ EE + + L ISLHA +   RN ++P  R Y +E ++     Y    N R+
Sbjct: 175 GPVDQLKKLREEHLKIQLTISLHAATQSARNRIIPHMRIYAIEDVVKQALSYSERHN-RK 233

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           I F Y++L GIND P D   L K  +G    IN++ +NP          +++IV F   +
Sbjct: 234 IVFAYLLLPGINDRPSDVRQLAKWFRGKKVMINVLQYNPTSNSRIKAPQKREIVAFKHQL 293

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374
           +++G    +R   G +I AACGQL +   +  K
Sbjct: 294 EQAGLEVTMRVSHGREINAACGQLANTYNKFKK 326


>gi|149197716|ref|ZP_01874766.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155]
 gi|149139286|gb|EDM27689.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155]
          Length = 343

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/314 (36%), Positives = 171/314 (54%), Gaps = 24/314 (7%)

Query: 62  HLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVS 119
            L+  HF I   +I+  + S  DG  K L++         + IETV +     R +LC+S
Sbjct: 49  ELVRDHFEIPQLKIISRQDSKIDGASKLLVQ-----TEDGLNIETVILRIGTGRTSLCIS 103

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ GC+  C+FC T T    RNLT  EI+ QV+LA              G ++    RK+
Sbjct: 104 SQAGCTEKCTFCSTATLGFKRNLTLAEIIGQVILA--------------GEILRKEDRKV 149

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
            NIV MGMGEPL N DNV KSL I   S  +  S +R+T+ST G   NI ++      V 
Sbjct: 150 RNIVFMGMGEPLRNTDNVLKSLEIMLSSAYMGLSSKRVTVSTIGITDNITKLRHSFPEVN 209

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA ++ +R+IL+PIN+ +P+E + +       L++   +  +Y+++K +NDSP  
Sbjct: 210 LALSLHASNDQVRDILMPINKTFPMETIKETLLSAQELASG-DLMIQYLLIKDLNDSPEQ 268

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
           A  L   LKGI   INLIP+N   G   + CS ++ +  F + ++ S +    R   G D
Sbjct: 269 AQELAAFLKGINCIINLIPYNDSMGMGNWKCSSEEKMSAFQDVLQESDFQVTRRHSLGRD 328

Query: 358 ILAACGQLKSLSKR 371
           I AACGQL + +++
Sbjct: 329 IDAACGQLAAKNQK 342


>gi|302766119|ref|XP_002966480.1| hypothetical protein SELMODRAFT_85220 [Selaginella moellendorffii]
 gi|300165900|gb|EFJ32507.1| hypothetical protein SELMODRAFT_85220 [Selaginella moellendorffii]
          Length = 425

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 199/373 (53%), Gaps = 38/373 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67
           L+G   ++L++   ++G      R R  Q++  +Y     + Q  +++S+  R  L+++ 
Sbjct: 73  LLGKSEKQLQDLCEEMG----EKRFRGKQMYLLLYKVRKAEIQEFTNLSKGFREKLISEG 128

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP---EKSRGTLCVSSQVGC 124
           + +    I  +  S DGT K LL+     +     IETV IP   E +R T+CVSSQVGC
Sbjct: 129 WEVGRSPIHHKVNSVDGTIKVLLKLKDSRL-----IETVGIPADEENNRLTVCVSSQVGC 183

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC TG     R+L   EI+ QVL+   +                   +++SN+V 
Sbjct: 184 PLRCAFCATGKGGFTRSLKPHEIIEQVLVMEEIF-----------------KQRVSNVVF 226

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAIS 242
           MGMGEP+ N  +V  +    ++ +G+   +R IT+ST G VPN  R     ++   LA+S
Sbjct: 227 MGMGEPMLNMASVLAAHRCLNEDIGI--GQRMITISTVG-VPNSIRKLAAHKLQSTLAVS 283

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +  LR  +VP  + YPL+ L++ C+ Y  ++  RR++FEY +L G+NDS   A  L
Sbjct: 284 LHAPNQRLREQIVPSAKSYPLDALMEDCKEYFSIT-GRRVSFEYTLLAGVNDSKELAFEL 342

Query: 303 IKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++L    +   +NLIP+NP     +    QK + TF E + +   ++ +R  RGLD  A
Sbjct: 343 GELLHHWDMSHHVNLIPYNPVADSLFQRPWQKSVQTFVETLAKCRVNASVRQTRGLDANA 402

Query: 361 ACGQLKSLSKRIP 373
           ACGQL++  ++ P
Sbjct: 403 ACGQLRNQFQKTP 415


>gi|266622739|ref|ZP_06115674.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
 gi|288865503|gb|EFC97801.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
 gi|291557353|emb|CBL34470.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium siraeum V10Sc8a]
 gi|295092179|emb|CBK78286.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium cf.
           saccharolyticum K10]
          Length = 328

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/273 (37%), Positives = 149/273 (54%), Gaps = 23/273 (8%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IETV+I  +  GT+CVS+QVGC + C FC +G    VRNLT+ EI+ Q++L R       
Sbjct: 76  IETVFIKRRDGGTVCVSTQVGCPVGCIFCESGRNGFVRNLTSSEIVQQIILLR------- 128

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         RK++ IV MGMGEPL N+DN+ K++ I  D  GL+F    IT+ST 
Sbjct: 129 --------------RKVNRIVFMGMGEPLFNYDNLIKAIHILRDRYGLNFPTDGITISTV 174

Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G V  + ++ EE + + L ISLHA +   RN ++P  R Y +E ++     Y    N R+
Sbjct: 175 GPVDQLKKLREEHLKIQLTISLHAATQSARNRIIPHMRIYAIEDVVKQALSYSERHN-RK 233

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           I F Y++L GIND P D   L K  +G    IN++ +NP          +++IV F   +
Sbjct: 234 IVFAYLLLPGINDRPSDVRQLAKWFRGKKVMINVLQYNPTSNSRIKAPQKREIVAFKHQL 293

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374
           +++G    +R   G +I AACGQL +   +  K
Sbjct: 294 EQAGLEVTMRVSHGREINAACGQLANTYNKFKK 326


>gi|21674009|ref|NP_662074.1| florfenicol resistance protein, putative [Chlorobium tepidum TLS]
 gi|81791215|sp|Q8KD71|RLMN_CHLTE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|21647156|gb|AAM72416.1| florfenicol resistance protein, putative [Chlorobium tepidum TLS]
          Length = 374

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 43/369 (11%)

Query: 14  REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73
           R+EL E L ++G P      R +Q+ +W+Y      F+ MS +S+++R  L   + II+P
Sbjct: 30  RKELTELLTRLGEPA----YRANQLHRWLYSNQALRFEEMSTLSKQLRQKLASEW-IIHP 84

Query: 74  --------EIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   E  D   ++ + T K+L++     +     +E+V IP + R T C+SSQ+GC
Sbjct: 85  ASLVGTERETTDASLVTGNPTAKFLIKLEDNEL-----VESVLIPSEERITACISSQIGC 139

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC TG     RNLTA EI  QV L             +E        R ++NIV 
Sbjct: 140 PLRCTFCATGHMGFRRNLTASEITDQVFL-------------LEKEAQKRHWRGLTNIVF 186

Query: 185 MGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGF---VPNIARVGEEIGVMLA 240
           MGMGEPL N DNV +S+ ++       S S+R+IT+ST G    +  IAR G  +   LA
Sbjct: 187 MGMGEPLLNLDNVLESIGTLTEKDYQFSISERKITISTVGLPVEMDRIARSG--LKTKLA 244

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLH+    +R  ++PI     L+ L  A   Y  ++ ++ +T  Y++L+GINDSP DA 
Sbjct: 245 ISLHSADQLIRERMMPIAADITLDKLAKAINSYNSVT-SQPVTLVYMLLEGINDSPEDAR 303

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYL--CSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
            L++  K +  KINLI +N     ++   CS  K +  F + +  +G    +R  +G  I
Sbjct: 304 KLVRFAKRVLCKINLIDYNSIVTLKFKPGCSSSKTM--FIQQLLDAGLLVTVRKSQGATI 361

Query: 359 LAACGQLKS 367
            AACGQL +
Sbjct: 362 NAACGQLAT 370


>gi|305680861|ref|ZP_07403668.1| 23S rRNA m2A2503 methyltransferase [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659066|gb|EFM48566.1| 23S rRNA m2A2503 methyltransferase [Corynebacterium matruchotii
           ATCC 14266]
          Length = 385

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 187/359 (52%), Gaps = 33/359 (9%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79
           AL  +G+P    + R +Q+ K  Y R   D + M+D+   VR  + +         V + 
Sbjct: 49  ALADLGLP----KFRANQLAKHYYGRLEADPRTMTDLPAAVRDAVAEALFPTLMTPVRQV 104

Query: 80  ISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138
            + DG T K L R     +     +E+V +   +R TLC+SSQ GC + C FC TG   L
Sbjct: 105 TADDGETHKTLWRLHDGTL-----LESVLMRYPNRATLCISSQAGCGMACPFCATGQAGL 159

Query: 139 VRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
            RNL+  EI+ QV   AR+++ +               G ++SNIV MGMGEPL N+  V
Sbjct: 160 DRNLSTGEIIDQVRSAARTMVAE---------------GSRLSNIVFMGMGEPLANYKRV 204

Query: 198 KKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNIL 254
             ++    A    G   S+R +T+ST G  P I ++ +E + V LA+SLH   ++LR+ L
Sbjct: 205 VSAVRQITAPVPQGFGISQRNVTVSTVGMAPMIRKLADENLSVTLAVSLHTPDDELRDTL 264

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPA 311
           VP+N ++ +  ++DA  +Y   S  RR++ EY +++ IND    A  L K L    G  A
Sbjct: 265 VPVNNRWSVAEVLDAAAYYADRS-GRRVSIEYALIRDINDQGWRADLLGKKLHKALGSKA 323

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
            +NLIP NP PG ++  S ++    F   +   G +  +R  +G +I AACGQL + ++
Sbjct: 324 HVNLIPLNPTPGSKWDASPREQQAEFVRRVIAQGVTCTVRDTKGQEIAAACGQLAAENR 382


>gi|154509153|ref|ZP_02044795.1| hypothetical protein ACTODO_01674 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798787|gb|EDN81207.1| hypothetical protein ACTODO_01674 [Actinomyces odontolyticus ATCC
           17982]
          Length = 406

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 185/357 (51%), Gaps = 24/357 (6%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
           ++ L  +G+P      R  Q+ +  +     D   MSDI   +   ++     + P++V 
Sbjct: 55  KQVLKDLGLPA----FRADQLSRHYFTHFQADPANMSDIPAGMHEAVSD---ALLPKLVT 107

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
           + +S +      ++   R   G  ++E+V +    R TLCVSSQ GC + C FC TG   
Sbjct: 108 KVVSLEADGGRTIKDLWRLYDG-AQVESVLMRYPQRTTLCVSSQAGCGMACPFCATGQMG 166

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
           L RNL+  EI+ QV  A++       C D +    P+   K+SN+V MGMGEPL N+  V
Sbjct: 167 LTRNLSTAEIVDQVREAQA------SCRDGKLAGGPT---KLSNVVFMGMGEPLANYKTV 217

Query: 198 KKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNIL 254
             +L   I     G   S R IT+ST G VP I ++ GE + V LA+SLHA  +DLR+ L
Sbjct: 218 VAALHRLIDPAPEGFGMSARNITVSTVGLVPAIKKLAGEGMPVTLAVSLHAPDDDLRDEL 277

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---A 311
           +PIN ++ +  L+DA R Y  L+  RR++ EY ++K +ND    A  L   L        
Sbjct: 278 IPINSRWKVGELLDAARGY-FLATGRRVSIEYALIKDMNDQEWRAQLLADELNKRGHGWV 336

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
            +N IP NP PG  +  S +     F + ++ +G ++ IR  RG DI  ACGQL ++
Sbjct: 337 HVNPIPLNPTPGSIWTASTRAAQEAFVKRLQDNGIATSIRDTRGSDIDGACGQLATV 393


>gi|300780939|ref|ZP_07090793.1| cfr family radical SAM enzyme [Corynebacterium genitalium ATCC
           33030]
 gi|300532646|gb|EFK53707.1| cfr family radical SAM enzyme [Corynebacterium genitalium ATCC
           33030]
          Length = 377

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 192/370 (51%), Gaps = 37/370 (10%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           +  EE  EAL ++G+P    + R  QI +  Y R   D   M+D+    R L+      +
Sbjct: 28  LSEEERIEALGELGLP----KFRADQIARHYYGRFEADPSTMTDLPAAQRELVKDS---L 80

Query: 72  YPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           +P ++    K+  D   T K L R     +     +E+V +    R TLC+SSQ GC + 
Sbjct: 81  FPRLLTPVRKVETDNGDTTKTLWRLHDGIL-----LESVLMRYPGRATLCISSQAGCGMA 135

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG   L RNL+  EI+ QV  A +++               + G +++N+V MGM
Sbjct: 136 CPFCATGQGGLDRNLSTAEIVDQVREAAAMM--------------EAEGSRLTNVVFMGM 181

Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GEPL N++ V  ++   ++    G   S+R +T+ST G  P I ++ +E + V LA+SLH
Sbjct: 182 GEPLANYNRVVSAVRQIVSPAPHGFGISQRNVTVSTVGLAPAIRKLADEGLSVTLAVSLH 241

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
              ++LR+ LVP+N ++ ++ ++DA R+Y      RR++ EY +++ IND    A  L +
Sbjct: 242 TPDDELRDELVPMNNRFTVQDVLDAARYYAD-QTGRRVSIEYALIRDINDHDFRADMLGQ 300

Query: 305 ILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
            L    G    +NLIP NP PG ++  S ++    F   +   G +  +R  +G +I AA
Sbjct: 301 KLHDALGPLVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVTCTVRDTKGQEIAAA 360

Query: 362 CGQLKSLSKR 371
           CGQL +  K+
Sbjct: 361 CGQLAADEKQ 370


>gi|328948233|ref|YP_004365570.1| ribosomal RNA large subunit methyltransferase N [Treponema
           succinifaciens DSM 2489]
 gi|328448557|gb|AEB14273.1| Ribosomal RNA large subunit methyltransferase N [Treponema
           succinifaciens DSM 2489]
          Length = 342

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 180/363 (49%), Gaps = 33/363 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK SL G+  EE+ +A+      Q     R  QI++WI  +G   F+ M++I +  R  L
Sbjct: 3   KKVSLSGLFPEEIAKAI------QLSPLFRAKQIYEWIS-KGAESFEQMTNIDKTTRKFL 55

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVG 123
            ++  +   ++ +     DGT K  +      +   + IETV + +K  R T CVS Q G
Sbjct: 56  EENVLLRSSKVTEVLKDPDGTIKLQI-----SLSDGLAIETVLLTDKEGRKTACVSCQAG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC TG   L RNLTA EI+ +        G                   + NIV
Sbjct: 111 CAMGCAFCQTGRLGLGRNLTAGEIVEEFFFMEKEAGT------------------LDNIV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242
            MGMGEPL N D ++K+++I +D  G   S RRITLST G +  I  + E    V LAIS
Sbjct: 153 FMGMGEPLQNLDAIRKAVAILTDKKGRGLSPRRITLSTCGLISGIYELAENGPFVRLAIS 212

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L      LR  L+P+++  PL  L  A + Y      +RIT E  +L G N     A  +
Sbjct: 213 LTTADPALREQLMPVSKGNPLPELKTAIKFYSE-KTGKRITLEAALLSGQNTGLESAKRM 271

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +   G+ A INLIP+NP  G ++    +K+   F + ++ +     +RT RG+ I  AC
Sbjct: 272 AEFAAGLDAYINLIPWNPVQGLQFKTPSRKECEEFVKILQNANLKVNLRTRRGVKIGGAC 331

Query: 363 GQL 365
           GQL
Sbjct: 332 GQL 334


>gi|225021120|ref|ZP_03710312.1| hypothetical protein CORMATOL_01132 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946120|gb|EEG27329.1| hypothetical protein CORMATOL_01132 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 389

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 186/359 (51%), Gaps = 33/359 (9%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79
           AL  +G+P    + R +Q+ K  Y R   D + M+D+   VR  + +         V + 
Sbjct: 53  ALADLGLP----KFRANQLAKHYYGRLEADPRTMTDLPAAVRDAVAEALFPTLMTPVRQV 108

Query: 80  ISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138
            + DG T K L R     +     +E+V +   +R TLC+SSQ GC + C FC TG   L
Sbjct: 109 TADDGETHKTLWRLHDGTL-----LESVLMRYPNRATLCISSQAGCGMACPFCATGQAGL 163

Query: 139 VRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
            RNL+  EI+ QV   AR++  +               G ++SNIV MGMGEPL N+  V
Sbjct: 164 DRNLSTGEIIDQVRSAARTMAAE---------------GNRLSNIVFMGMGEPLANYKRV 208

Query: 198 KKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNIL 254
             ++    A    G   S+R +T+ST G  P I ++ +E + V LA+SLH   ++LR+ L
Sbjct: 209 VSAVRQITAPVPQGFGISQRNVTVSTVGMAPMIRKLADENLSVTLAVSLHTPDDELRDTL 268

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPA 311
           VP+N ++ +  ++DA  +Y   S  RR++ EY +++ IND    A  L K L    G  A
Sbjct: 269 VPVNNRWSVAEVLDAAAYYADRS-GRRVSIEYALIRDINDQGWRADLLGKKLHKALGSKA 327

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
            +NLIP NP PG ++  S ++    F   +   G +  +R  +G +I AACGQL + ++
Sbjct: 328 HVNLIPLNPTPGSKWDASPREQQAEFVRRVIAQGVTCTVRDTKGQEIAAACGQLAAENR 386


>gi|332298026|ref|YP_004439948.1| Ribosomal RNA large subunit methyltransferase N [Treponema
           brennaborense DSM 12168]
 gi|332181129|gb|AEE16817.1| Ribosomal RNA large subunit methyltransferase N [Treponema
           brennaborense DSM 12168]
          Length = 342

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 183/372 (49%), Gaps = 35/372 (9%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  + K S+ G++ EEL        +P    + R  QI+KW+   G   FQ M ++ Q +
Sbjct: 1   MATMDKISVAGLLPEELS------ALPGVSPQFRGKQIFKWLG-NGAASFQEMRNLPQHL 53

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKS-RGTLCV 118
           R  L++  ++   +I  E    DGT K  +      CI      ETV + + S R T CV
Sbjct: 54  RDSLSETAAVRSSQIAQELRDPDGTVKLQITLHDGACI------ETVLLTDSSGRKTACV 107

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           S Q GC++ C+FC TG   L RNL A EI+ Q L    + G                  K
Sbjct: 108 SCQAGCAMGCAFCQTGKLGLARNLDAAEIVEQFLYLEQVSG------------------K 149

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           + NIV MGMGEP+ N   V+K++++ +   G   S RRIT+STSG +  I  + +    M
Sbjct: 150 LDNIVFMGMGEPMMNLSAVRKAVAVLTHPEGRGLSARRITVSTSGIIKGIYDLADNGPHM 209

Query: 239 -LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SL     +LR  L+P+ +  PL  L  A  +Y   S  +R T E  +L G+N    
Sbjct: 210 RLAVSLTTADPELRERLMPVTKGNPLPELQKAIAYYTEKSK-KRCTLEAALLAGMNTGTA 268

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  LI+  +G+   INLIP+NP PG  +      +   F   ++++  +  +RT RG  
Sbjct: 269 SAERLIEFARGLDVHINLIPWNPVPGLPFAEPSAAECTAFVRLLEKARLNVTLRTRRGRK 328

Query: 358 ILAACGQLKSLS 369
           I  ACGQL  ++
Sbjct: 329 IGGACGQLGKIT 340


>gi|293189850|ref|ZP_06608564.1| radical SAM enzyme, Cfr family [Actinomyces odontolyticus F0309]
 gi|292821265|gb|EFF80210.1| radical SAM enzyme, Cfr family [Actinomyces odontolyticus F0309]
          Length = 426

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 123/356 (34%), Positives = 184/356 (51%), Gaps = 24/356 (6%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
           ++ L  +G+P      R  Q+ +  +     D   MSDI   +   ++     + P++V 
Sbjct: 75  KQVLKDLGLPA----FRADQLSRHYFTHFEADPANMSDIPAGMHEAVSD---ALLPKLVT 127

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
           + +S +      ++   R   G  ++E+V +    R TLCVSSQ GC + C FC TG   
Sbjct: 128 KVVSLEADGGRTIKDLWRLYDG-AQVESVLMRYPQRTTLCVSSQAGCGMACPFCATGQMG 186

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
           L RNL+  EI+ QV  A++       C D +    P+   K+SN+V MGMGEPL N+  V
Sbjct: 187 LTRNLSTAEIVDQVREAQA------SCRDGKLAGGPT---KLSNVVFMGMGEPLANYKTV 237

Query: 198 KKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNIL 254
             +L   I     G   S R IT+ST G VP I ++ GE + V LA+SLHA  +DLR+ L
Sbjct: 238 VAALHRLIDPAPEGFGMSARNITVSTVGLVPAIKKLAGEGMPVTLAVSLHAPDDDLRDEL 297

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---A 311
           +PIN ++ +  L+DA R Y  L+  RR++ EY ++K +ND    A  L   L        
Sbjct: 298 IPINSRWKVGELLDAARGY-FLATGRRVSIEYALIKNMNDQEWRAQLLADELNKRGHGWV 356

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +N IP NP PG  +  S +     F + ++ +G ++ IR  RG DI  ACGQL +
Sbjct: 357 HVNPIPLNPTPGSIWTASTRAAQEAFVKRLQDNGIATSIRDTRGSDIDGACGQLAT 412


>gi|30687969|ref|NP_850319.1| radical SAM domain-containing protein [Arabidopsis thaliana]
 gi|330254611|gb|AEC09705.1| radical SAM domain-containing protein [Arabidopsis thaliana]
          Length = 431

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 135/385 (35%), Positives = 199/385 (51%), Gaps = 40/385 (10%)

Query: 9   LIGMMREELEE-ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQ 66
           LIGM   EL+E A+  + I Q   R +  Q+   IY R +   +  S++    R  L++ 
Sbjct: 64  LIGMSEPELQELAINLVLIFQEGYRGK--QLHHLIYKRKVNKVEDFSNLPLTFRKGLVDG 121

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EK--SRGTLCVSS 120
            F +    I     + DGT K LL+         + IETV IP    EK  +R T CVSS
Sbjct: 122 GFKVGRSPIYQTVTATDGTIKLLLKLEDN-----LLIETVGIPVQDDEKGITRLTACVSS 176

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC L CSFC TG     RNL   EI+ QVL            ED+          +++
Sbjct: 177 QVGCPLRCSFCATGKGGFSRNLQRHEIIEQVL----------AIEDV-------FKHRVT 219

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVM 238
           N+V MGMGEP+ N  +V  +    +    +   +R IT+ST G VPN  +     ++   
Sbjct: 220 NVVFMGMGEPMLNLKSVLDAHRCLNKD--IEIGQRMITISTVG-VPNTIKKLASHKLQST 276

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA +  LR  +VP  + YPLE ++  CR Y   +N RR++FEY +L G+ND    
Sbjct: 277 LAVSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETN-RRVSFEYALLAGVNDQVEH 335

Query: 299 ALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
           A+ L ++L+  G    +NLIP+NP  G EY    +K ++ F+  ++    ++ +R  RGL
Sbjct: 336 AVELAELLREWGKTYHVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGL 395

Query: 357 DILAACGQLKSLSKRIPKVPRQEMQ 381
           D  AACGQL++  ++ P +   + Q
Sbjct: 396 DASAACGQLRNKFQKSPLLTETDSQ 420


>gi|309811464|ref|ZP_07705246.1| 23S rRNA m2A2503 methyltransferase [Dermacoccus sp. Ellin185]
 gi|308434515|gb|EFP58365.1| 23S rRNA m2A2503 methyltransferase [Dermacoccus sp. Ellin185]
          Length = 394

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 191/362 (52%), Gaps = 30/362 (8%)

Query: 19  EALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYPEIV 76
           +AL K +G+P      R  Q+    + R + D   M+D+ +  R  ++ Q    +   I 
Sbjct: 47  QALAKELGLPA----FRAKQLSNHYFERFVADPAEMTDLPKNGREEMVAQLMPTLLTSI- 101

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
            + +  DG     L+   R   G + +E+V +    R T+C+SSQ GC + C FC TG +
Sbjct: 102 -KTLVADGGNT--LKQVHRLFDGAL-VESVIMRYPGRVTMCISSQAGCGMNCPFCATGQE 157

Query: 137 KLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
            L RNLT  EI+ QV+    LL  G+ PG +D E         ++SN+V MGMGE L N+
Sbjct: 158 GLTRNLTTAEIVEQVVAGARLLRSGELPGLDDDER----ETPLRVSNVVFMGMGEALANY 213

Query: 195 ----DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
               D +K+ +S A +  GL  S R +T+ST G VP I ++  E I V LA+SLHA  ++
Sbjct: 214 RQAIDAIKRLVSPAPE--GLGMSARGVTMSTVGLVPAIDKLAAEGIPVTLALSLHAPDDE 271

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--- 306
           LRN LVPIN ++ ++  +DA   Y   +  RR++ EY ++K IND    A  L K L   
Sbjct: 272 LRNELVPINTRWSVDEALDAAHRY-FEATGRRVSIEYALIKDINDQGWRADLLAKKLNAR 330

Query: 307 -KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            KG    +N IP NP PG ++  S +     F E ++  G  + +R  RG DI  ACGQL
Sbjct: 331 GKGW-VHVNPIPLNPTPGSKWTASRKGVEQNFVERLRAGGIPTTVRDTRGSDIDGACGQL 389

Query: 366 KS 367
            +
Sbjct: 390 AA 391


>gi|218189834|gb|EEC72261.1| hypothetical protein OsI_05406 [Oryza sativa Indica Group]
          Length = 395

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 187/375 (49%), Gaps = 40/375 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67
           L+G+   +L +  + +G        R  Q+   +Y    +  Q  S + +  R  L+   
Sbjct: 36  LLGLSEPDLRQLAVDLG----QQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFREALVGAG 91

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGTLCVSSQV 122
           + +    +     + DGT K LL+     +     IETV IP       SR T CVSSQV
Sbjct: 92  WKVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDKGPSRLTACVSSQV 146

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L CSFC TG     RNL A EI+ QVL                  +  +   +++N+
Sbjct: 147 GCPLRCSFCATGKGGFARNLHAHEIVEQVL-----------------AIEETFQHRVTNV 189

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLA 240
           V MGMGEP+ N  +V ++    +    L   +R IT+ST G VPN  +     ++   LA
Sbjct: 190 VFMGMGEPMLNLKSVLEAHRCLNKE--LKIGQRMITISTVG-VPNTIKKLASHKLQSTLA 246

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +  LR  +VP  + YPLE L+D C++Y  L   RR++FEY +L GIND+   A 
Sbjct: 247 VSLHAPNQKLRETIVPSAKSYPLEALMDDCKNY-FLETGRRVSFEYTLLAGINDAKEHAE 305

Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
            L ++L   G    +NLIP+NP  G EY    +K +  F + ++    +  +R  RGLD 
Sbjct: 306 ELAELLHTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDA 365

Query: 359 LAACGQLKSLSKRIP 373
            AACGQL++  ++ P
Sbjct: 366 NAACGQLRNEFQKNP 380


>gi|205829899|sp|A4X4J7|RLMN_SALTO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 372

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 179/343 (52%), Gaps = 25/343 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCD--GTRK 87
           R R  Q+    + R +RD + M+D+    R  L      +++ P     +++CD   T K
Sbjct: 44  RFRARQVSTHYFGRLVRDPEQMTDLPAATREKLADQLLPTLLTPV---RELACDDGATHK 100

Query: 88  WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
            L R     +     +E+V +    R T+C+SSQ GC + C FC TG   L RNL+  EI
Sbjct: 101 ALWRLHDGSL-----VESVLMGYPDRVTVCLSSQAGCGMACPFCATGQAGLTRNLSTAEI 155

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IAS 205
           + Q +    +              +     ++S +V MGMGEPL N++ V  ++   +A 
Sbjct: 156 VDQAVYLAGV---------AASGAVAGSPPRLSRVVFMGMGEPLANYNRVVAAIRRLVAP 206

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264
              GL  S+R IT+ST G VP I R+  E++ V LA+SLHA  ++LR+ LVP+N+++ + 
Sbjct: 207 SPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTLALSLHAPDDELRDELVPVNQRWKVS 266

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
            +++A   Y      RR++ EY M+K +ND P  A  L ++L    A +NLIP NP PG 
Sbjct: 267 EVLEAAWEY-AARTGRRVSIEYAMIKDVNDQPWRADLLGRLLADRLAHVNLIPLNPTPGS 325

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +  S +     F   ++ +G S+ +R  RG +I  ACGQL +
Sbjct: 326 RWDASPKPVEREFVRRLRAAGVSTTVRDTRGREIDGACGQLAA 368


>gi|145593878|ref|YP_001158175.1| radical SAM protein [Salinispora tropica CNB-440]
 gi|145303215|gb|ABP53797.1| radical SAM enzyme, Cfr family [Salinispora tropica CNB-440]
          Length = 353

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 179/343 (52%), Gaps = 25/343 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCD--GTRK 87
           R R  Q+    + R +RD + M+D+    R  L      +++ P     +++CD   T K
Sbjct: 25  RFRARQVSTHYFGRLVRDPEQMTDLPAATREKLADQLLPTLLTPV---RELACDDGATHK 81

Query: 88  WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
            L R     +     +E+V +    R T+C+SSQ GC + C FC TG   L RNL+  EI
Sbjct: 82  ALWRLHDGSL-----VESVLMGYPDRVTVCLSSQAGCGMACPFCATGQAGLTRNLSTAEI 136

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IAS 205
           + Q +    +              +     ++S +V MGMGEPL N++ V  ++   +A 
Sbjct: 137 VDQAVYLAGV---------AASGAVAGSPPRLSRVVFMGMGEPLANYNRVVAAIRRLVAP 187

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264
              GL  S+R IT+ST G VP I R+  E++ V LA+SLHA  ++LR+ LVP+N+++ + 
Sbjct: 188 SPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTLALSLHAPDDELRDELVPVNQRWKVS 247

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
            +++A   Y      RR++ EY M+K +ND P  A  L ++L    A +NLIP NP PG 
Sbjct: 248 EVLEAAWEY-AARTGRRVSIEYAMIKDVNDQPWRADLLGRLLADRLAHVNLIPLNPTPGS 306

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +  S +     F   ++ +G S+ +R  RG +I  ACGQL +
Sbjct: 307 RWDASPKPVEREFVRRLRAAGVSTTVRDTRGREIDGACGQLAA 349


>gi|320532046|ref|ZP_08032934.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320135737|gb|EFW27797.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 391

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 125/349 (35%), Positives = 178/349 (51%), Gaps = 36/349 (10%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDGTRK--- 87
            R  Q+ +  +    R    M+D+    R    Q  + + PE++     +  DG R    
Sbjct: 54  FRADQLSRHYFTHFTRHSADMTDLPAAQR---EQLCAELLPELITPVRALRADGGRTIKH 110

Query: 88  -WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
            W L          V +E+V +  K R TLCVSSQ GC + C FC TG   L RNL+  E
Sbjct: 111 LWELH-------DGVRVESVLMRYKERTTLCVSSQAGCGMACPFCATGQMGLTRNLSTGE 163

Query: 147 ILLQVLLA--RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-- 202
           I+ QV  A   S  G+  G         P+   ++SN+V MGMGEP+ N+ NV  +L   
Sbjct: 164 IVEQVRHAAQASAAGELTGG--------PA---RLSNVVFMGMGEPMVNYKNVVGALHRL 212

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKY 261
           I     G   S R IT+ST G VP I R+ GE + V LA+SLHA  ++LR+ L+P+N K+
Sbjct: 213 IDPAPEGFGLSARGITVSTVGLVPLIRRLAGEGLPVTLAVSLHAPDDELRDELIPVNSKW 272

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPF 318
            +  L+DA   Y  L+  RR++ EY ++K +ND    A  L   L       A +N IP 
Sbjct: 273 KVGELLDAAHDY-FLATGRRVSIEYALIKDMNDHAWRAQLLADELNRRDTGWAHVNPIPL 331

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           NP PG  + CS+      F + ++R+G ++ +R  RG DI  ACGQL +
Sbjct: 332 NPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGSDIDGACGQLAT 380


>gi|145340644|ref|XP_001415431.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575654|gb|ABO93723.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 340

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/348 (33%), Positives = 176/348 (50%), Gaps = 40/348 (11%)

Query: 33  MRTSQIWKWIYV------RGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR 86
            R  QI   +Y       R + DF  +S   +E   L + +  +          + DGT 
Sbjct: 4   FRGKQIADHLYAPNGASARSVDDFTTLSKKLRE--ELKSANVRVGRSRRHHVAAASDGTA 61

Query: 87  KWLLRFPARCIGGPVEIETVYIPE----KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142
           K LLR     +     +ETV IP     K+R T CVSSQVGC + C+FC TG     RNL
Sbjct: 62  KLLLRLDDDRV-----VETVGIPATENGKNRLTACVSSQVGCPMRCTFCATGKGGFARNL 116

Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202
              EI+ QVL                       G+++SN+V MGMGEPL N  NV K+  
Sbjct: 117 APHEIVDQVLALEEYF-----------------GQRVSNVVFMGMGEPLLNVPNVLKAHE 159

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKY 261
             +  +G+    R IT+ST G   +I ++   ++  +LA+SLHA + +LR  ++P  + Y
Sbjct: 160 ALNKEIGI--GARHITISTVGVRGSIEKLAHAQLQSVLAVSLHAPNQELRETIIPSAKVY 217

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFN 319
           P+E L+  C  Y  ++  RR+TFEY +L GIND P  A  L ++L  + + + +NLIP+N
Sbjct: 218 PMEDLLQDCEQY-FVATGRRVTFEYTLLGGINDQPEHAKELGRLLYARNLASHVNLIPYN 276

Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           P    +Y    +  +  F + ++     + IR  RGL+  AACGQL++
Sbjct: 277 PVDDSDYQRPSRATVYAFRDILEGLNVPASIRQTRGLEAAAACGQLRN 324


>gi|78186813|ref|YP_374856.1| hypothetical protein Plut_0951 [Chlorobium luteolum DSM 273]
 gi|123771083|sp|Q3B4B8|RLMN_PELLD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78166715|gb|ABB23813.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium luteolum DSM 273]
          Length = 361

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 193/373 (51%), Gaps = 34/373 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ +++ +  +EL+EAL  I  PQ     R +Q+ +W++      F  M+ +S  +R  L
Sbjct: 4   ERSNILNLRMDELKEALAAINEPQ----WRAAQLHQWLFSHRAGSFDDMTTLSLPLRRKL 59

Query: 65  NQHFSIIYP--EIVDEKIS---CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
            + F I  P  E  DE +       T K L++ P         +ETV IP  +R T CVS
Sbjct: 60  AESFYIQQPVTEKHDETMEGSPAGATEKLLIQLP-----DGERVETVLIPGPNRMTACVS 114

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +Q GC L CSFC TG     RNL++ EI  QV     +L +     + E          I
Sbjct: 115 AQAGCLLGCSFCATGQMGFRRNLSSGEITGQVWALSDMLQE----RNREA--------SI 162

Query: 180 SNIVMMGMGEPLCNFDNVKKS-LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           SNIV MGMGEPL N  NV ++ L++++     S S+R+IT+ST G  P I R+ +  +  
Sbjct: 163 SNIVFMGMGEPLLNTANVIEAVLNLSTRKYRFSTSQRKITISTVGITPEIDRLADTGLKT 222

Query: 238 MLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            LA+SLH+   + R  L+P   R+YPL+ L ++   Y        +T  Y++LKGINDS 
Sbjct: 223 KLAVSLHSAIQEKREALMPQAARQYPLDRLRESLIGYAS-KTGEPVTLAYMLLKGINDSE 281

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            DA  LI+   G   KINLI +NP    ++  +C   ++   F + ++ +G    IR   
Sbjct: 282 MDAKRLIRYASGFFCKINLIDYNPIVNIKFEPVCDGTRE--RFRDILQDAGLQVTIRKSY 339

Query: 355 GLDILAACGQLKS 367
           G  I AACGQL +
Sbjct: 340 GTPINAACGQLAA 352


>gi|296117650|ref|ZP_06836234.1| radical SAM enzyme, Cfr family [Corynebacterium ammoniagenes DSM
           20306]
 gi|295969381|gb|EFG82622.1| radical SAM enzyme, Cfr family [Corynebacterium ammoniagenes DSM
           20306]
          Length = 367

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 184/360 (51%), Gaps = 37/360 (10%)

Query: 21  LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-- 78
           L ++G+P    + R  Q+ K  YV    D   M+DI +  R  + + F   +P ++ +  
Sbjct: 36  LDELGLP----KFRAKQLAKHYYVHHTVDVDEMTDIPESARKDIQEKF---FPPLMTQIR 88

Query: 79  KISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
             S D   T K L R     +     +E+V +    R TLC+SSQ GC + C FC TG  
Sbjct: 89  GFSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQAGCGMACPFCATGQG 143

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
            L RNL+A EI+ Q+  A                 + + G +++N+V MGMGEPL N+  
Sbjct: 144 GLDRNLSAAEIVEQLRNASK--------------TMEAEGGRLTNVVFMGMGEPLANYKR 189

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255
           V  ++   +D  G   S R +T+ST G  P + ++ +E +   LAISLH   ++ RN LV
Sbjct: 190 VVHAVKQFTDPDGFGMSMRNVTISTVGLAPAVRKLADEGLSCTLAISLHTPDDEFRNELV 249

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA----LNLIKILKGIPA 311
           P+N+++ ++ ++DA R+Y     +RR++ EY +++  ND    A      L K+L G   
Sbjct: 250 PVNQRWDVDEILDAARYYVD-KTSRRVSIEYALIRDKNDQDFRADMLGQKLHKVL-GSKV 307

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
            +NLIP NP PG E+  S ++    F   +   G    +R  +G +I AACGQL +  ++
Sbjct: 308 HVNLIPLNPTPGSEWDASPKERQEEFVRRVIAQGVPCTVRDTKGQEIAAACGQLAAEERQ 367


>gi|212715800|ref|ZP_03323928.1| hypothetical protein BIFCAT_00701 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661167|gb|EEB21742.1| hypothetical protein BIFCAT_00701 [Bifidobacterium catenulatum DSM
           16992]
          Length = 406

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 191/365 (52%), Gaps = 30/365 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  EE       +G+P    + R  Q+    Y     + +  SD     R    +   I 
Sbjct: 59  MTEEERITKAKDLGLP----KFRVKQLANHYYGHFDVNAEEFSDFPAAKR---VEAAEIF 111

Query: 72  YPEIVDE---KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           +P ++ E   +++ +GT    ++   R   G + IE+V +   +R TLC+SSQVGC + C
Sbjct: 112 FPTLITEVTRQVADEGT---TIKTLWRLFDGSL-IESVLMRYPTRTTLCISSQVGCGMGC 167

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG   L RN++A EI+ QV +A   + D        G V    GR +SNIV MGMG
Sbjct: 168 PFCATGQLGLTRNMSAGEIVEQVRVAAKAMRD--------GEVAGGPGR-LSNIVFMGMG 218

Query: 189 EPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHA 245
           EP+ N+ +V  ++    A    G   S R IT+ST G VP I ++  E I V LA+SLHA
Sbjct: 219 EPMGNYKSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLMAEGIPVRLAVSLHA 278

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR+ LVP+N+++    ++DA   Y  L++ RR++ EY +++GIND    A  L K 
Sbjct: 279 PNDELRDELVPMNKRFNTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHAKLLAKR 337

Query: 306 LKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           L       A +N IP NP  G  +  S  +D   F + + ++G ++ +R  RG DI  AC
Sbjct: 338 LNHYGDNWAHVNPIPLNPIEGSRWTASKPEDEQQFLDILHKAGITATLRDTRGQDIDGAC 397

Query: 363 GQLKS 367
           GQL +
Sbjct: 398 GQLAA 402


>gi|86742258|ref|YP_482658.1| ribosomal RNA large subunit methyltransferase N [Frankia sp. CcI3]
 gi|123764529|sp|Q2J713|RLMN_FRASC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|86569120|gb|ABD12929.1| 23S rRNA m(2)A-2503 methyltransferase [Frankia sp. CcI3]
          Length = 421

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 186/370 (50%), Gaps = 35/370 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLLNQ 66
           L  + R+E  +  + +G P      R  Q+ +  Y R I   + + M+D+ +  R  L  
Sbjct: 38  LADLTRQERRDVAVSLGQPA----FRADQVARHYYARLIAADEPEAMTDLPERDRQPLLD 93

Query: 67  HFSIIYPEIVDEKISCDG--TRK--WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
                    V   +SCD   TRK  W      R + G   +E+V +    R T+CVSSQ 
Sbjct: 94  ALLPRLLVPV-RTLSCDDGLTRKTAW------RTVDG-ASLESVIMRYPDRATVCVSSQA 145

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG--DFPGCEDIEGMVIPSVGRKIS 180
           GC + C FC TG   L RNL+  EI+ QV+ A  +L   +  G E            ++S
Sbjct: 146 GCGMGCPFCATGQGGLTRNLSTAEIVEQVVHAARVLRRRELAGGET-----------RLS 194

Query: 181 NIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGV 237
           N+V MGMGEPL N+  V  +L    A    GL  S R +T+ST G VP I R+ GE + V
Sbjct: 195 NVVFMGMGEPLANYAAVIAALRRLTAHPPEGLGLSARGLTVSTVGLVPAIRRLAGEGLPV 254

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA  + LRN LVPIN ++P+  ++ A   Y  ++  RR++ EY ++ G+ND   
Sbjct: 255 TLAVSLHAPDDVLRNELVPINTRWPVVEVLAAAWEYAEVTG-RRVSVEYALIDGVNDDVG 313

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L  +L G  A +NLIP NP  G  +  S       F   ++  G  + +R  RG +
Sbjct: 314 RADALADLLVGRLAHVNLIPLNPTGGSSWRASAPAGQRAFVRRLRDRGIVTTVRDTRGRE 373

Query: 358 ILAACGQLKS 367
           I AACGQL +
Sbjct: 374 IAAACGQLAA 383


>gi|229820988|ref|YP_002882514.1| radical SAM enzyme, Cfr family [Beutenbergia cavernae DSM 12333]
 gi|229566901|gb|ACQ80752.1| radical SAM enzyme, Cfr family [Beutenbergia cavernae DSM 12333]
          Length = 383

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/350 (35%), Positives = 177/350 (50%), Gaps = 38/350 (10%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDGTRK--- 87
            R  Q+ +  +    RD   MSD+    R  L    + + P++V     +  DG      
Sbjct: 55  FRADQLSRHYFTHLTRDADAMSDLPAASREDL---VAALLPQLVSPVRTMEADGGATVKT 111

Query: 88  -WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
            W L   A+       +E+V +  + R TLCVSSQ GC + C FC TG   L RNL+  E
Sbjct: 112 LWALFDDAK-------VESVLMRYRDRTTLCVSSQAGCGMACPFCATGQLGLTRNLSTAE 164

Query: 147 ILLQVLLARSL--LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-- 202
           I+ QV LA +    GD PG              ++SN+V MGMGEPL N+  V  ++   
Sbjct: 165 IVEQVRLAAAACRAGDLPGGPT-----------RLSNVVFMGMGEPLANYRAVIGAVRRM 213

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKY 261
           +     GL  S R +T+ST G VP I ++  E I V LA+SLHA  ++LR+ LVPIN ++
Sbjct: 214 VEPAPSGLGMSARNVTVSTVGLVPAIDKLAAEGIPVTLAVSLHAPDDELRSELVPINTRW 273

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL----KGIPAKINLIP 317
            +   +DA R Y  +++ RR++ EY +++ +ND    A  L K L    +G    +N IP
Sbjct: 274 SVGEALDAARRYFDITH-RRVSIEYALIRDVNDHGWRADLLAKELVARGRGW-VHVNPIP 331

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            NP PG  +  SD      F   ++ +G  + IR  RG DI  ACGQL +
Sbjct: 332 LNPTPGSRWTASDPGVEAEFVARLRHAGIPTTIRDTRGSDIDGACGQLAA 381


>gi|297598414|ref|NP_001045547.2| Os01g0973400 [Oryza sativa Japonica Group]
 gi|57899226|dbj|BAD87375.1| radical SAM domain-containing protein-like [Oryza sativa Japonica
           Group]
 gi|57899699|dbj|BAD87419.1| radical SAM domain-containing protein-like [Oryza sativa Japonica
           Group]
 gi|215697144|dbj|BAG91138.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215708729|dbj|BAG93998.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215740846|dbj|BAG97002.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215765571|dbj|BAG87268.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255674123|dbj|BAF07461.2| Os01g0973400 [Oryza sativa Japonica Group]
          Length = 397

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 186/374 (49%), Gaps = 38/374 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67
           L+G+   +L +  + +G        R  Q+   +Y    +  Q  S + +  R  L+   
Sbjct: 38  LLGLSEPDLRQLAVDLG----QQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFREALVGAG 93

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGTLCVSSQV 122
           + +    +     + DGT K LL+     +     IETV IP       SR T CVSSQV
Sbjct: 94  WKVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDKGPSRLTACVSSQV 148

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L CSFC TG     RNL A EI+ QVL                  +  +   +++N+
Sbjct: 149 GCPLRCSFCATGKGGFARNLHAHEIVEQVL-----------------AIEETFQHRVTNV 191

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V MGMGEP+ N  +V ++    +    L   +R IT+ST G    I ++   ++   LA+
Sbjct: 192 VFMGMGEPMLNLKSVLEAHRCLNKE--LKIGQRMITISTVGVPSTIKKLASHKLQSTLAV 249

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +  LR  +VP  + YPLE L+D C++Y  L   RR++FEY +L GIND+   A  
Sbjct: 250 SLHAPNQKLRETIVPSAKSYPLEALMDDCKNY-FLETGRRVSFEYTLLAGINDAKEHAEE 308

Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L ++L   G    +NLIP+NP  G EY    +K +  F + ++    +  +R  RGLD  
Sbjct: 309 LAELLHTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDAN 368

Query: 360 AACGQLKSLSKRIP 373
           AACGQL++  ++ P
Sbjct: 369 AACGQLRNEFQKNP 382


>gi|291518520|emb|CBK73741.1| 23S rRNA m(2)A-2503 methyltransferase [Butyrivibrio fibrisolvens
           16/4]
          Length = 361

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/291 (36%), Positives = 163/291 (56%), Gaps = 25/291 (8%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLL 90
           + R  Q+++W++     D+  M +I + ++  L  + +    + VD +IS  DGTRK+L 
Sbjct: 30  KFRAKQLYEWMHQHLALDYDEMKNIPKSLKEKLVANCNYHPLKKVDLQISKIDGTRKYLF 89

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
                   G + +E+V++  K   ++C+SSQVGC + C FC +     VRNLT  E+L Q
Sbjct: 90  EL----YDGQM-VESVWMSYKHGNSVCISSQVGCKMGCRFCASTLDGWVRNLTPSEMLGQ 144

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           +   +                    G ++SN+V+MG GEP+ N+DN+ K + + SD  GL
Sbjct: 145 IYAIQR-----------------DTGERVSNLVVMGTGEPMDNYDNIVKFVRLLSDENGL 187

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           + S+R IT+ST G VP I ++ EE + + LAISLHA +   R  L+P+  KY +  LIDA
Sbjct: 188 NISQRNITVSTCGIVPRIKQLAEEDLTITLAISLHAPNQQKRAELMPVANKYEIHELIDA 247

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           C +Y      RRITFEY ++ G+ND   DA  L +++  +   +NLIP NP
Sbjct: 248 CEYYFN-KTGRRITFEYSLVGGVNDRDEDAAELGQLIGHLNCHVNLIPVNP 297


>gi|254527128|ref|ZP_05139180.1| radical SAM enzyme, Cfr family [Prochlorococcus marinus str. MIT
           9202]
 gi|221538552|gb|EEE41005.1| radical SAM enzyme, Cfr family [Prochlorococcus marinus str. MIT
           9202]
          Length = 348

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 188/373 (50%), Gaps = 45/373 (12%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV-----R 61
           ++L+G   ++LE   L+ G        R  QI  WIY    R+ +   D  + +     +
Sbjct: 2   KNLLGSSVKDLENVALEYG----QAAFRGRQIHNWIY--NYRNKKKSIDQIEVLPLDFRK 55

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            L +  F +    + +  ++ DGT K LL            IE V IP + R T C+SSQ
Sbjct: 56  KLKDDGFKLSELSVQERNLANDGTLKLLL-----SANDNESIECVGIPTEKRLTACLSSQ 110

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC TG + L R+L A EIL Q+L                  +   + RK++N
Sbjct: 111 VGCPMDCKFCATGKEGLKRSLKASEILDQILF-----------------IENEMNRKVTN 153

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-----ARVGEEIG 236
           IV MGMGEPL N D++   +SI S +     S+R+IT+ST   VP +     A+  + +G
Sbjct: 154 IVFMGMGEPLLNIDDL--LVSIRSINKDFQISQRKITVSTVA-VPKMINKLSAKSFQILG 210

Query: 237 ---VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
                LAISLHA +  +R  ++P  + Y +E +I+ C+ Y      RR++FEY+ML G+N
Sbjct: 211 NCQFTLAISLHASNQKIRETIIPSAKNYEIENIIEDCKQYVR-DTGRRVSFEYLMLSGVN 269

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D    A  L  +LKG    +NLI +N     E+  +  K + +F   +  +G +  +R  
Sbjct: 270 DKLEHANELSNLLKGFQCHVNLIQYNQIDEVEFQRTSLKSLQSFQSKLSHNGIAVSLRKS 329

Query: 354 RGLDILAACGQLK 366
           RGLD  AACGQL+
Sbjct: 330 RGLDKNAACGQLR 342


>gi|168043878|ref|XP_001774410.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674262|gb|EDQ60773.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 372

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 190/383 (49%), Gaps = 54/383 (14%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           E L+  L +IG+   HV      IW  +      +   +  +      ++ + F  +  +
Sbjct: 14  EVLKWELERIGVKALHVFT----IWTHVLAHPDTEAHDVPGLPFAAIDMIKEKFKTLTSQ 69

Query: 75  IVDEKISCDGTRKWLL--------------RFPA---RCIGGPVEIETVYIPEKSRGTLC 117
           + D++ S DGT   LL              R  A   +  GGP +         SR TLC
Sbjct: 70  VKDQETSADGTTTKLLIQLQGGQSVEAVIMRHDAGAGKYAGGPRQ-------GGSRATLC 122

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC + C+FC TGT  L  NL+A EI+ Q++ A                V P    
Sbjct: 123 VSSQVGCQMGCTFCATGTMGLKGNLSAGEIVEQLVHASQ--------------VTP---- 164

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEEI- 235
            I NIV MGMGEPL N+ +V + + I +    GLS S   IT+ST G +P I  +  ++ 
Sbjct: 165 -IRNIVFMGMGEPLNNYKSVVEGIQIMTGRCFGLSPS--HITVSTVGVIPRILSIANDLP 221

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
           GV LA+SLHA + +LR  +VP  + YPL  L+ A   Y  +S  RR+  EYVML GINDS
Sbjct: 222 GVNLALSLHAPTQELRCQIVPTAKAYPLHKLMAALNSYQTISR-RRVLVEYVMLAGINDS 280

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPR 354
              A  L  +LK     +NLIP+NP    +Y  + Q+D+  F + ++   G  + IR   
Sbjct: 281 DEVAHQLGTLLKDHNVTLNLIPYNPATSSDYKPTSQEDLTRFQKILRGVHGVRTTIRQEM 340

Query: 355 GLDILAACGQLKSLSKRIPKVPR 377
           G DI  ACGQL  +S+ + + P+
Sbjct: 341 GQDIAGACGQL-VISQSVKQSPK 362


>gi|126697010|ref|YP_001091896.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
           MIT 9301]
 gi|205829802|sp|A3PEX0|RLMN_PROM0 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|126544053|gb|ABO18295.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
           MIT 9301]
          Length = 347

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 186/372 (50%), Gaps = 43/372 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV-----R 61
           ++L+G   ++LE   L  G        R  QI+ WIY    R+ +   D  + +     +
Sbjct: 2   KNLLGSTIKDLENVALDYG----QAGFRGRQIYNWIY--NYRNKKKNIDQIEVLPLDFRK 55

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            L +  F +    I +  ++ DGT K LL            IE V IP + R T C+SSQ
Sbjct: 56  RLKDDGFKVSDLSIHERNLANDGTLKLLLSTE-----DNESIECVGIPTEKRLTACLSSQ 110

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC TG + L R+L   EIL Q+L   +                  + RK++N
Sbjct: 111 VGCPMDCKFCATGKEGLKRSLKVSEILDQILFIEN-----------------EMNRKVTN 153

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE------- 234
           IV MGMGEPL N D++   LSI S +  L  S+R+IT+ST      I ++  +       
Sbjct: 154 IVFMGMGEPLLNIDDL--LLSIRSINEDLKISQRKITVSTVAVPKMINKLSAKSFKILGN 211

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               LA+SLHA +  +R  ++P  + Y +E +I+ C+ Y      RR++FEY+ML+G+ND
Sbjct: 212 CQFTLAVSLHAPNQKIRETIIPSAKNYEIENIIEDCKQYVR-DTGRRVSFEYLMLRGVND 270

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
               A  L  +LKG    +NLI +N     E+  +  KD+ +F   +  +G +  +R  R
Sbjct: 271 KIEHANELSHLLKGFQCHVNLIQYNQIDEVEFQRACLKDLQSFQSRLSHNGIAVSLRKSR 330

Query: 355 GLDILAACGQLK 366
           GLD  AACGQL+
Sbjct: 331 GLDKNAACGQLR 342


>gi|227495074|ref|ZP_03925390.1| possible Fe-S-cluster redox protein [Actinomyces coleocanis DSM
           15436]
 gi|226831526|gb|EEH63909.1| possible Fe-S-cluster redox protein [Actinomyces coleocanis DSM
           15436]
          Length = 403

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/363 (34%), Positives = 188/363 (51%), Gaps = 38/363 (10%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
           ++ L   G+P      R  Q+ +  +   + D   MSD+    +++++Q    + P +V 
Sbjct: 57  KQVLKDAGLPA----FRADQLSRHYFGNYVADPAQMSDLP---KNMVDQVRDSLMPTLVK 109

Query: 78  --EKISCDG----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
               +  DG       W L   +R       +E+V +    R TLC+SSQ GC + C FC
Sbjct: 110 PVRTLEADGGLTIKHLWELFDGSR-------VESVLMRYPQRTTLCISSQAGCGMACPFC 162

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   L RNL+  EI+ QV LA         CED +    P+   ++SNIV MGMGEPL
Sbjct: 163 ATGQMGLTRNLSTAEIVEQVRLAAK------ACEDGDLEGGPT---RLSNIVFMGMGEPL 213

Query: 192 CNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VMLAISLHAVS 247
            N+  + ++L   I     G   S R IT+ST G VP I ++  ++G  V LAISLHA  
Sbjct: 214 ANYKAIVETLDRLIKESPEGFGLSARNITVSTVGLVPAIDKLA-KLGHPVTLAISLHAPD 272

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           ++LR+ L+PIN ++ +  L+DA R Y  ++  RR++ EY +++ +ND    A  L   L 
Sbjct: 273 DELRDELIPINSRWKVGELLDAARRY-FVATGRRVSIEYALIRDMNDHAWRAQLLADELN 331

Query: 308 GIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
                 A +N IP NP PG  +  S +K    F E ++++G S+ IR  RG DI  ACGQ
Sbjct: 332 KRGHGWAHVNPIPLNPTPGSIWTASTKKAQQEFVEILRKNGISTTIRDTRGSDIDGACGQ 391

Query: 365 LKS 367
           L +
Sbjct: 392 LAT 394


>gi|271963404|ref|YP_003337600.1| radical SAM protein [Streptosporangium roseum DSM 43021]
 gi|270506579|gb|ACZ84857.1| radical SAM protein [Streptosporangium roseum DSM 43021]
          Length = 374

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 183/344 (53%), Gaps = 29/344 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE--KISCDG--TRKW 88
            R  Q+ +  + +   D + M+D+    R    +  + ++P+++    +++ D   TRK 
Sbjct: 49  FRADQLSRHYFEKLNGDPELMTDLPATARE---KFAAALFPKLLTSVREMTTDAGTTRKT 105

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R     +     +E+V +    R T+CVSSQ GC + C FC TG   L RN+T  EI+
Sbjct: 106 LWRLFDGAL-----VESVLMRYTDRTTMCVSSQAGCGMNCPFCATGQAGLTRNMTTAEIV 160

Query: 149 LQVLL-ARSLL-GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IA 204
            QV+  AR+L  G+ PG              ++SN+V MGMGEPL N+  V  ++   + 
Sbjct: 161 EQVVAGARALAAGEVPGGPG-----------RVSNVVFMGMGEPLANYKAVIGAVRRMVE 209

Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPL 263
               GL  S R +T+ST G VP I ++  E + V LA+SLHA  ++LR+ LVPIN ++ +
Sbjct: 210 PSPDGLGISARGVTVSTVGLVPAIGKLAAEGLPVTLALSLHAPDDELRDTLVPINTRWKV 269

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
             ++DA  +Y   +  RR++ EY ++K IND    A  L K++K     +NLIP NP PG
Sbjct: 270 AEVLDAAWNY-AATTKRRVSIEYALIKDINDQEWRADLLGKLIKNKLVHVNLIPLNPTPG 328

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            ++  S  +D   F   ++  G    +R  RG +I  ACGQL +
Sbjct: 329 SKWTASRPEDERAFVRRLEFHGVPVTVRDTRGREIDGACGQLAA 372


>gi|255077056|ref|XP_002502181.1| predicted protein [Micromonas sp. RCC299]
 gi|226517446|gb|ACO63439.1| predicted protein [Micromonas sp. RCC299]
          Length = 395

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 195/380 (51%), Gaps = 44/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRD-FQGMSDISQEVRH-L 63
           + +L+G+  +EL E   +  +PQ     R  QI   IY    +   +GM  +    R  L
Sbjct: 39  QRTLLGLGLDELRELSAEFALPQ----WRGQQIHDAIYGEMRKTTIEGMQQLPLGFRQAL 94

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRG-----TLC 117
           ++  +     E V+     DGTRK L  F  RC  G + IE V IP E+++G     T+C
Sbjct: 95  VDAGYETGRREPVEIVSDEDGTRKAL--FELRC--GSI-IEAVGIPVERAKGRRRRFTVC 149

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC++ CSFC TG Q   RNLT++EI+ QVL            ED+        GR
Sbjct: 150 VSSQVGCAMRCSFCATGRQGFRRNLTSDEIVNQVL----------SMEDV-------FGR 192

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEI 235
           + +N+VMMGMGEPL N   V ++    +  +G+    R  T+ST G VPN         +
Sbjct: 193 RATNVVMMGMGEPLLNLREVLRAHRCLNRDVGI--GGRYFTISTVG-VPNALSKLAAHRL 249

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              LA+SLHA + +LR  L+P  + +PL+ L++  R Y   +  RR+TFEY +L G NDS
Sbjct: 250 QATLAVSLHAPTQELRERLIPSAKAFPLDALLEEVRMYRK-ATGRRVTFEYTLLAGENDS 308

Query: 296 PRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI-KRSGYSSPIR 351
              A  L K+L+   G    INL+P+NP  G  +    +  +  F + +    G S  +R
Sbjct: 309 EDHARALAKLLRSKVGRGCHINLLPWNPVAGANHQRPSKSAVNRFCDVLAAERGVSYSVR 368

Query: 352 TPRGLDILAACGQLKSLSKR 371
             RGL   AACGQL    +R
Sbjct: 369 ATRGLVAQAACGQLTGAFER 388


>gi|157414083|ref|YP_001484949.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
           marinus str. MIT 9215]
 gi|205829804|sp|A8G6Y2|RLMN_PROM2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157388658|gb|ABV51363.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
           MIT 9215]
          Length = 348

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 188/373 (50%), Gaps = 45/373 (12%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV-----R 61
           ++L+G   ++LE   L+ G        R  QI  WIY    R+ +   D  + +     +
Sbjct: 2   KNLLGSSVKDLENVALEYG----QAAFRGRQIHNWIY--NYRNKKKSIDQIEALPLDFRK 55

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            L +  F +    + +  ++ DGT K LL            IE V IP + R T C+SSQ
Sbjct: 56  KLKDDGFKLSELSVQERNLANDGTLKLLL-----SANDNESIECVGIPTEKRLTACLSSQ 110

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC TG + L R+L A EIL Q+L                  +   + RK++N
Sbjct: 111 VGCPMDCKFCATGKEGLKRSLKASEILDQILF-----------------IENEMNRKVTN 153

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-----ARVGEEIG 236
           IV MGMGEPL N D++   +SI S +     S+R+IT+ST   VP +     A+  + +G
Sbjct: 154 IVFMGMGEPLLNIDDL--LVSIRSINKDFQISQRKITVSTVA-VPKMINKLSAKSFQILG 210

Query: 237 ---VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
                LAISLHA +  +R  ++P  + Y +E +I+ C+ Y      RR++FEY+ML G+N
Sbjct: 211 NCQFTLAISLHASNQKIRETIIPSAKNYEIENIIEDCKQYVR-DTGRRVSFEYLMLSGVN 269

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D    A  L  +L+G    +NLI +N     E+  +  K + +F   +  +G +  +R  
Sbjct: 270 DKLEHANELSNLLRGFQCHVNLIQYNQIDEVEFQRTSLKSLQSFQSRLSHNGIAVSLRKS 329

Query: 354 RGLDILAACGQLK 366
           RGLD  AACGQL+
Sbjct: 330 RGLDKNAACGQLR 342


>gi|330999065|ref|ZP_08322788.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|329575586|gb|EGG57120.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 302

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/326 (34%), Positives = 167/326 (51%), Gaps = 31/326 (9%)

Query: 53  MSDISQE--VRHLLNQHFSIIYPEIVDEKI-SCDGTRKWLLRFPARCIGGPVEIETVYIP 109
           M  I QE  +R+ +N HF+     I  +K+     T K++             IETV+I 
Sbjct: 1   MERIKQEPYIRNYINSHFTKKNLSISTKKVYKSSDTEKYVYELKDNRY-----IETVFIK 55

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
            +  GT+CVS+QVGC + C FC +G    VRNLT  EI+ QV+L R              
Sbjct: 56  RRDGGTVCVSTQVGCPVGCIFCESGRNGFVRNLTPSEIVQQVILIR-------------- 101

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229
                  +K++ IV MGMGEPL N+DN+  ++ I  D  GL+F    IT+ST G V  + 
Sbjct: 102 -------QKVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVKQLK 154

Query: 230 RVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
           ++ EE + + L ISLHA +   RN ++P   KY +E ++     Y    N R++ F Y++
Sbjct: 155 KLREEHLKIQLTISLHAATQAARNCIIPHMHKYAIEDVVKQALSYSQRHN-RKVVFAYLL 213

Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348
           L GIND   D   L K  KG    IN++ +NP    +     ++++V F   ++++G   
Sbjct: 214 LPGINDRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEV 273

Query: 349 PIRTPRGLDILAACGQLKSLSKRIPK 374
            +R   G +I AACGQL +   +  K
Sbjct: 274 TMRVSHGREIKAACGQLANTYNKAKK 299


>gi|300783906|ref|YP_003764197.1| ribosomal RNA large subunit methyltransferase N [Amycolatopsis
           mediterranei U32]
 gi|299793420|gb|ADJ43795.1| ribosomal RNA large subunit methyltransferase N [Amycolatopsis
           mediterranei U32]
          Length = 368

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/345 (33%), Positives = 180/345 (52%), Gaps = 28/345 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE--KISCD--GTRKW 88
            R  Q+    + R   D + M+DI    R  L    + + P ++ E   ++ D   TRK 
Sbjct: 40  FRAKQLSNHYFSRLTVDPEEMTDIPAASRQRL---VADLMPTLLTEVRALAADDGATRKT 96

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R     +     +E+V +    R TLC+SSQ GC + C FC TG   L RNL+  EI+
Sbjct: 97  LWRAHDGTL-----LESVLMRYPDRATLCISSQAGCGMACPFCATGQGGLDRNLSTAEIV 151

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            QV  A +++ D           +P    ++SNIV MGMGEPL N+  V  ++   +D  
Sbjct: 152 DQVRSAAAVMRDG---------AMPGGPGRLSNIVFMGMGEPLANYKRVVAAVRRITDPA 202

Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             GL   +R +T+ST G  P I ++ +E + V LA+SLH   ++LR+ LVP+N ++ ++ 
Sbjct: 203 PGGLGIGQRSVTVSTVGLAPAIRKLADEKMQVRLAVSLHTPDDELRDTLVPVNERWSVDE 262

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWP 322
           ++ A R+Y   S  RR++ EY +++ IND P  A  L K L+   G    +N+IP NP P
Sbjct: 263 VLSAARYYADTSG-RRVSIEYALIRDINDQPWRAELLAKRLRKHLGQLVHVNVIPLNPTP 321

Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G ++  S +     F   +   G +  +R  RG +I AACGQL +
Sbjct: 322 GSKWDASPKPVEREFVRLVNAGGVACTVRDTRGQEIAAACGQLAA 366


>gi|239918594|ref|YP_002958152.1| radical SAM enzyme, Cfr family [Micrococcus luteus NCTC 2665]
 gi|281415191|ref|ZP_06246933.1| ribosomal RNA large subunit methyltransferase N [Micrococcus luteus
           NCTC 2665]
 gi|239839801|gb|ACS31598.1| radical SAM enzyme, Cfr family [Micrococcus luteus NCTC 2665]
          Length = 465

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 190/368 (51%), Gaps = 23/368 (6%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +  +E +E   +IG+P      R  Q+    +     D + M+D+ ++ R  + + F
Sbjct: 108 LADLTLKERQEKAKEIGLPA----FRAKQLSVHYFEHYTTDPEQMTDLPRDKREAIAEAF 163

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
              +P ++ E    +  R   ++F  R   G + +E+V +    R TLCVSSQ GC + C
Sbjct: 164 ---FPPLLTEVRRMETDRGDTIKFLWRLFDGAL-VESVLMRYPGRVTLCVSSQAGCGMNC 219

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            FC TG   L RN++  EI+ Q++LA  ++  G   G     G        +++N+V MG
Sbjct: 220 PFCATGQAGLTRNMSTAEIVEQIVLANQVIAQGGLGGKRKDGG----HDADRVTNVVFMG 275

Query: 187 MGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGEPL N+  V  ++    D    GL  S R ITLST G VP I ++ EE + +  A+SL
Sbjct: 276 MGEPLANYKRVMAAVHRMVDPSPEGLGMSARNITLSTVGLVPAIRKLAEEGVPLTFALSL 335

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  ++LR+ L+P+N ++  +  IDA   Y  ++  RR++ EY ++K +ND    A  L 
Sbjct: 336 HAPDDELRDELIPVNSRWKADEAIDAAYDY-FVATGRRVSIEYALIKDMNDHAWRADLLA 394

Query: 304 KIL----KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           K L    KG    +N IP NP PG  +  S++     F + +  +G  + +R  RG +I 
Sbjct: 395 KKLNARGKGW-VHVNPIPLNPTPGSIWTASEKDVTREFVDRLNAAGIPTTLRDTRGKEID 453

Query: 360 AACGQLKS 367
            ACGQL +
Sbjct: 454 GACGQLAA 461


>gi|317506353|ref|ZP_07964165.1| cfr family radical SAM enzyme [Segniliparus rugosus ATCC BAA-974]
 gi|316255363|gb|EFV14621.1| cfr family radical SAM enzyme [Segniliparus rugosus ATCC BAA-974]
          Length = 369

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/362 (35%), Positives = 183/362 (50%), Gaps = 36/362 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +  EEL EA+  +G        R  Q+ +  Y R   +   M+DI    R  L    
Sbjct: 20  LADLAAEELREAVAGLG----EKPFRAQQLARHYYSRLTAEPGVMTDIPAASRGKLADAL 75

Query: 69  --SIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             S+I P      + CDG  T K L R     +     +E+V +    R TLCVSSQ GC
Sbjct: 76  LPSLITPA---RTMGCDGGETVKTLWRLHDGAL-----VESVLMGYADRVTLCVSSQAGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ QV LA +   D           +    R +SN+V 
Sbjct: 128 GMACPFCATGQGGLTRNLSTAEIVEQVRLAAAAARDGK---------VAGGPRNLSNVVF 178

Query: 185 MGMGEPLCNFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           MGMGEPL N++     V++  S A D +GL  S+R + +ST G VP I R+ GE + V L
Sbjct: 179 MGMGEPLANYNRVLAAVRRITSPAPDGLGL--SQRSVVVSTVGLVPAIKRLAGEGLSVTL 236

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ LVP+N ++P+  ++ A + Y      RR++ EY +++ +ND P  A
Sbjct: 237 AVSLHAPDDELRDTLVPVNTRWPVAEVLAAAQGY-ARQTGRRVSVEYALIREVNDQPWRA 295

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L  +L    G  A +NLIP NP PG ++  S  +    F   ++  G S  +R  RG 
Sbjct: 296 DLLGGLLHQALGPLAHVNLIPLNPTPGSKWDASSPEAQREFVRRVRAKGVSCTVRDTRGQ 355

Query: 357 DI 358
           +I
Sbjct: 356 EI 357


>gi|303280559|ref|XP_003059572.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459408|gb|EEH56704.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 406

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 188/357 (52%), Gaps = 37/357 (10%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ---HFSIIYPEI 75
           +AL K+         R  Q+   +Y       + ++ I +  R  L     H   + P  
Sbjct: 62  DALTKLAKEHGQPGYRGKQLHDAVYSHRKEAIEAITQIPEAFRSSLRASGVHVGRVRP-- 119

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
           +D   + DGT+K LL+   RC  G V IE V    + R T+CVSSQVGC++ CSFC TG 
Sbjct: 120 IDVVAAPDGTKKVLLKL--RC--GSV-IEAVGETRRRRFTVCVSSQVGCAMRCSFCATGR 174

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
           Q   RNLT++EI+ QVL            ED+        GR+ +N+VMMGMGEPL N  
Sbjct: 175 QGFKRNLTSDEIVNQVL----------ALEDV-------FGRRATNVVMMGMGEPLMNLK 217

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNIL 254
            V ++    +  +G+    R  T+ST G    ++++   ++   LA+SLHA + +LR  L
Sbjct: 218 EVLRAHRCLNRDVGI--GGRYFTISTVGVPNQLSKLAAHKLQATLAVSLHAPTQELREKL 275

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPA 311
           +P  + Y ++ L++ CR Y   S  +R+TFEY +L G NDSP  A  L ++L+   G  +
Sbjct: 276 IPSAKAYHVDDLLEDCRLYKK-STGKRLTFEYTLLAGENDSPEHARALGRLLRTRVGRGS 334

Query: 312 KINLIPFNPWPGCE--YLCSDQKDIVTFSECI-KRSGYSSPIRTPRGLDILAACGQL 365
            +NL+P+NP  G E  +    +  +  F++ + K  G +  +R  RGL+  AACGQL
Sbjct: 335 HVNLLPWNPVTGAEDAHARPSKTAVKRFADALAKERGVTFTVRRTRGLEADAACGQL 391


>gi|299143975|ref|ZP_07037055.1| radical SAM enzyme, Cfr family [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518460|gb|EFI42199.1| radical SAM enzyme, Cfr family [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 349

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/285 (36%), Positives = 159/285 (55%), Gaps = 24/285 (8%)

Query: 83  DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142
           D T+K+L +   + I     +E V +  K   + C+S+QVGC + C FC +  + L+RNL
Sbjct: 74  DETKKFLFKLEDKNI-----VEGVLMKYKHGYSQCISTQVGCRMGCVFCASTKEGLIRNL 128

Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202
           +A E+L QV                   V       +SNI++MG GEP  N+DNV + L 
Sbjct: 129 SAYEMLGQVY-----------------EVEKRFNINVSNIILMGSGEPFDNYDNVIRFLK 171

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKY 261
           +     G + S R IT+ST G V  I  + +E + + LAISLH  +N  R+ ++PIN+KY
Sbjct: 172 LVHSKEGKNLSYRNITISTCGIVDKIYELSKENLPITLAISLHNTNNISRDNIMPINKKY 231

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321
            +E +I AC++Y  ++N+ RITFEY ++ G ND+  +A  L  ++ G+ A INLIP NP 
Sbjct: 232 NIEQIIQACKNYSNMTNS-RITFEYTLIGGQNDTLENAQELKSLINGLKAHINLIPLNPI 290

Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
                   +QK++  F + ++    +  IR   G DI+A+CGQL+
Sbjct: 291 KEYNKKRPNQKEVEDFKKKLEALKLNVTIRRELGADIMASCGQLR 335


>gi|124026587|ref|YP_001015702.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
           NATL1A]
 gi|205829803|sp|A2C4M8|RLMN_PROM1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123961655|gb|ABM76438.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
           NATL1A]
          Length = 359

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 182/343 (53%), Gaps = 35/343 (10%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  QI +WIY RG +    +S + ++ R  L+ +   I   + ++  ++ D T K L+ 
Sbjct: 33  FRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMG 92

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                  G + +ETV IP   R T+CVSSQ+GC + C FC TG   L R+L   EI+ QV
Sbjct: 93  ----TFDGEI-VETVGIPTDKRLTVCVSSQIGCPMGCKFCATGKGGLNRSLDVNEIVDQV 147

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +  R                  ++ R+ +++V MGMGEPL N  NV  S+   +  +G+ 
Sbjct: 148 ISVRE-----------------TMNRRPTHVVFMGMGEPLLNIQNVLDSIECLTSDIGIG 190

Query: 212 FSKRRITLSTSGFVPN----IARVGEE----IGVMLAISLHAVSNDLRNILVPINRKYPL 263
             +R+IT+ST G +PN    +A++ ++    +   LA+SLHA +  LR +++P    YP+
Sbjct: 191 --QRKITVSTVG-IPNTLSDLAKLAQDRLGRVQFTLAVSLHAPNQTLRELIIPSASSYPI 247

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
             L+  C+ Y  L+  RR++FEY++L G+ND    A  L  +++G  + +NLI +NP   
Sbjct: 248 NSLLKDCKKYIDLT-GRRVSFEYILLGGLNDKDIHAEQLANLMRGFQSHVNLIAYNPIAE 306

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             +    Q  +  F E ++  G +  +R  RG D  AACGQL+
Sbjct: 307 ENFKRPSQSRVNAFRELLENRGVAVSVRASRGRDKDAACGQLR 349


>gi|38234081|ref|NP_939848.1| hypothetical protein DIP1502 [Corynebacterium diphtheriae NCTC
           13129]
 gi|81564752|sp|Q6NGK9|RLMN_CORDI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|38200343|emb|CAE50029.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 368

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 190/375 (50%), Gaps = 37/375 (9%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
           F+  +    +  +E  +AL ++G+P    + R +QI +  Y R   D   M+D+    R 
Sbjct: 18  FMPPKHFADLSADERIDALKELGLP----KFRANQIARHYYGRLEADPSTMTDLPAAARE 73

Query: 63  LLNQHFSIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
            +      ++P+++     +  D   T+K L +     +     +E+V +   +R TLC+
Sbjct: 74  KVK---DALFPQLMQPVRAVQADDGETQKTLWKLHDGTL-----LESVLMRYPNRATLCI 125

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQ GC + C FC TG   L RNL+  EI+ QV  A +               + + G +
Sbjct: 126 SSQAGCGMACPFCATGQGGLDRNLSTGEIVDQVRAASA--------------TMQAEGGR 171

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEI 235
           +SNIV MGMGEPL N+  V  ++    A    G   S+R +T+ST G  P I ++  E++
Sbjct: 172 LSNIVFMGMGEPLANYKRVVSAVRQITAPVPEGFGISQRNVTVSTVGLAPAIRKLADEDL 231

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
            V LA+SLH   ++LRN LVP N ++ +  ++DA R+Y   S  RR++ EY +++ +ND 
Sbjct: 232 SVTLAVSLHTPDDELRNTLVPTNNRWEVAEVLDAARYYADRS-GRRVSIEYALIRDVNDQ 290

Query: 296 PRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
              A  L K L    G    +NLIP NP PG ++  S       F + +   G +  +R 
Sbjct: 291 GWRADMLGKKLHKALGPLVHVNLIPLNPTPGSKWDASPMDRQKEFVQRVIAQGVTCTVRD 350

Query: 353 PRGLDILAACGQLKS 367
            RG +I AACGQL +
Sbjct: 351 TRGQEIAAACGQLAA 365


>gi|289706145|ref|ZP_06502515.1| radical SAM enzyme, Cfr family [Micrococcus luteus SK58]
 gi|289557139|gb|EFD50460.1| radical SAM enzyme, Cfr family [Micrococcus luteus SK58]
          Length = 465

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 190/368 (51%), Gaps = 23/368 (6%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +  +E +E   +IG+P      R  Q+    +     D + M+D+ ++ R  + + F
Sbjct: 108 LADLTLKERQEKAKEIGLPA----FRAKQLSVHYFEHYTTDPEQMTDLPRDKREAIAEAF 163

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
              +P ++ E    +  R   ++F  R   G + +E+V +    R TLCVSSQ GC + C
Sbjct: 164 ---FPPLLTEVRRMETDRGDTVKFLWRLFDGAL-VESVLMRYPGRVTLCVSSQAGCGMNC 219

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            FC TG   L RN++  EI+ Q++LA  ++  G   G     G        +++N+V MG
Sbjct: 220 PFCATGQAGLTRNMSTAEIVEQIVLANQVIAAGGLGGKRKDGG----HDADRVTNVVFMG 275

Query: 187 MGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGEPL N+  V  ++    D    GL  S R ITLST G VP I ++ EE + +  A+SL
Sbjct: 276 MGEPLANYKRVMAAVHRMVDPSPEGLGMSARNITLSTVGLVPAIRKLAEEGVPLTFALSL 335

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  ++LR+ L+P+N ++  +  IDA   Y  ++  RR++ EY ++K +ND    A  L 
Sbjct: 336 HAPDDELRDELIPVNSRWKADEAIDAAYDY-FVATGRRVSIEYALIKDMNDHAWRADLLA 394

Query: 304 KIL----KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           K L    KG    +N IP NP PG  +  S++     F + +  +G  + +R  RG +I 
Sbjct: 395 KKLNARGKGW-VHVNPIPLNPTPGSIWTASEKDVTREFVDRLNAAGIPTTLRDTRGKEID 453

Query: 360 AACGQLKS 367
            ACGQL +
Sbjct: 454 GACGQLAA 461


>gi|167768548|ref|ZP_02440601.1| hypothetical protein CLOSS21_03107 [Clostridium sp. SS2/1]
 gi|167710072|gb|EDS20651.1| hypothetical protein CLOSS21_03107 [Clostridium sp. SS2/1]
          Length = 250

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/257 (38%), Positives = 151/257 (58%), Gaps = 19/257 (7%)

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
           K   ++C+SSQ GC + C FC +    L RNLT  E+L Q+   +          D E  
Sbjct: 4   KHGNSVCISSQAGCRMGCKFCASTLGGLDRNLTPSEMLSQIYYIQ---------RDTE-- 52

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  ++SN+VMMG GEP+ N+DNV + L + +   GL+ S+R IT+ST G VP I  
Sbjct: 53  ------ERVSNVVMMGTGEPMDNYDNVLRFLELITSEDGLNISQRNITISTCGIVPKIKE 106

Query: 231 VGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           + ++ + + LAISLH+ ++++R  L+PI  KY ++ L+DAC +Y   +N RR+TFEY ++
Sbjct: 107 LAQKHLQITLAISLHSPNDEMRRGLMPIAMKYSIDELLDACHYYFKETN-RRMTFEYSLV 165

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
            G+ND P  A  L   LKG P  +NLIP NP    ++  S  K ++ F + ++++  +  
Sbjct: 166 AGVNDQPVHAEELAGRLKGFPCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRVNVT 225

Query: 350 IRTPRGLDILAACGQLK 366
           IR   G DI AACGQL+
Sbjct: 226 IRREMGADINAACGQLR 242


>gi|119717461|ref|YP_924426.1| radical SAM protein [Nocardioides sp. JS614]
 gi|205829791|sp|A1SLQ4|RLMN_NOCSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|119538122|gb|ABL82739.1| 23S rRNA m(2)A-2503 methyltransferase [Nocardioides sp. JS614]
          Length = 376

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/354 (33%), Positives = 185/354 (52%), Gaps = 29/354 (8%)

Query: 23  KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC 82
           ++G+P      R  Q+    + R + D   M+D+    R  L    + + P ++    + 
Sbjct: 40  ELGLPG----FRAKQLSTHYFSRLVDDPDQMTDLPAGQRAEL---VAGLLPGLMTPLRTM 92

Query: 83  DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142
           +  R    +   R   G + +E+V +    R T+CVSSQ GC + C FC TG   L RN+
Sbjct: 93  EADRGTTRKTLWRLFDGAL-VESVLMRYPDRATMCVSSQAGCGMACPFCATGQGGLQRNM 151

Query: 143 TAEEILLQVLL-ARSLL-GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
           +  EI+ QV+  ARSL  G+ PG              ++SN+V MGMGEPL N+  V  +
Sbjct: 152 STAEIVEQVVAGARSLARGEVPGGPG-----------RVSNVVFMGMGEPLANYKAVLGA 200

Query: 201 LSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPI 257
           +   +D    GL  S R +T+ST G VP + ++ +E I V LA+SLHA  ++LRN LVPI
Sbjct: 201 VRRLTDPAPDGLGMSARGVTVSTVGLVPRMRQLADEGIPVTLALSLHAPDDELRNELVPI 260

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP----AKI 313
           N ++ +   ++A  +Y  ++  RR++ EY M++GIND    A  L  +L+G        +
Sbjct: 261 NTRFSVAETVEAAWNYAKVTK-RRVSIEYAMMRGINDQAWRADLLGDVLRGYGDWGWVHV 319

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           NLIP NP PG ++  SD  D   F   ++     + +R  RG +I  ACGQL +
Sbjct: 320 NLIPLNPTPGSKWTASDPADEREFVRRLEAKAIPTTVRDTRGREIDGACGQLAA 373


>gi|317498697|ref|ZP_07956989.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894039|gb|EFV16229.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 272

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/257 (38%), Positives = 151/257 (58%), Gaps = 19/257 (7%)

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
           K   ++C+SSQ GC + C FC +    L RNLT  E+L Q+   +          D E  
Sbjct: 4   KHGNSVCISSQAGCRMGCKFCASTLGGLDRNLTPSEMLSQIYYIQ---------RDTE-- 52

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  ++SN+VMMG GEP+ N+DNV + L + +   GL+ S+R IT+ST G VP I  
Sbjct: 53  ------ERVSNVVMMGTGEPMDNYDNVLRFLELITSEDGLNISQRNITISTCGIVPKIKE 106

Query: 231 VGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           + ++ + + LAISLH+ ++++R  L+PI  KY ++ L+DAC +Y   +N RR+TFEY ++
Sbjct: 107 LAQKHLQITLAISLHSPNDEMRRGLMPIAMKYSIDELLDACHYYFKETN-RRMTFEYSLV 165

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
            G+ND P  A  L   LKG P  +NLIP NP    ++  S  K ++ F + ++++  +  
Sbjct: 166 AGVNDQPVHAEELAGRLKGFPCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRVNVT 225

Query: 350 IRTPRGLDILAACGQLK 366
           IR   G DI AACGQL+
Sbjct: 226 IRREMGADINAACGQLR 242


>gi|212723564|ref|NP_001132113.1| hypothetical protein LOC100193530 [Zea mays]
 gi|195654259|gb|ACG46597.1| hypothetical protein [Zea mays]
          Length = 410

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 188/379 (49%), Gaps = 41/379 (10%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LL 64
           + +L+G+   +L +  + +G        R  Q+   +Y    +  Q  + + +  R  LL
Sbjct: 45  RRALLGLSEPQLRQLAIDLG----QQSYRGKQLHDLLYKSRAKQIQEFNHVPKAFREALL 100

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------EKSRGTLCV 118
              +S+    +     + DGT K LL+     +     IETV IP        SR T CV
Sbjct: 101 GAGWSVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDNKGSSRLTACV 155

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC L CSFC TG     RNL   EI+ QVL                  +  +   +
Sbjct: 156 SSQVGCPLRCSFCATGKGGFARNLQPHEIVEQVL-----------------AIEETFKHR 198

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--GEEIG 236
           ++N+V MGMGEP+ N  +V ++    +    L   +R +T+ST G VPN  ++    ++ 
Sbjct: 199 VTNVVFMGMGEPMMNLKSVLEAHQCFNKE--LKIGQRMMTISTVG-VPNTIKMLASHKLQ 255

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LA+SLHA +  LR  +VP  + YPL  L+D C+ Y  L   RR++FEY +L GIND  
Sbjct: 256 STLAVSLHAPNQKLRETIVPSAKSYPLGALMDDCKSY-FLETGRRVSFEYTLLAGINDEK 314

Query: 297 RDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
             A  L ++L+  G    +NLIP+NP  G EY    +K +  F + ++    +  +R  R
Sbjct: 315 EHAEELAELLRMCGGGYHVNLIPYNPIEGSEYKRPYRKVVQAFVDALEARKITVSVRRTR 374

Query: 355 GLDILAACGQLKSLSKRIP 373
           GLD  AACGQL++  ++ P
Sbjct: 375 GLDANAACGQLRNEFQKNP 393


>gi|294786945|ref|ZP_06752199.1| radical SAM enzyme, Cfr family [Parascardovia denticolens F0305]
 gi|315226582|ref|ZP_07868370.1| cfr family radical SAM enzyme [Parascardovia denticolens DSM 10105]
 gi|294485778|gb|EFG33412.1| radical SAM enzyme, Cfr family [Parascardovia denticolens F0305]
 gi|315120714|gb|EFT83846.1| cfr family radical SAM enzyme [Parascardovia denticolens DSM 10105]
          Length = 404

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 189/368 (51%), Gaps = 31/368 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI-SQEVRHLLNQH 67
           L+ M +++  + +  +G P      R  Q+ +  +     D    SD  S + + +    
Sbjct: 39  LVDMDQDQRVDLMKDLGYPS----FRLKQLGQHYFAHDDVDVASYSDFPSAKAQEVKEAF 94

Query: 68  FSIIYPEIVDEKISCDGTRK--WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           F  +   +++++     T K  W L   +R       IE+V +   SR TLC+SSQVGC 
Sbjct: 95  FPTLITPLLEQEADHGTTIKTLWKLFDGSR-------IESVLMKYPSRTTLCISSQVGCG 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RN++A EIL QV  A +   D    E       P+   ++SN+V M
Sbjct: 148 MACPFCATGQLGLTRNMSAGEILEQVRYASAQARDGRLGE-------PT---RLSNVVFM 197

Query: 186 GMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242
           GMGE L N+  + K++    A    G   S R IT+ST G VP I R+ GE I V LA+S
Sbjct: 198 GMGEALGNYRAMMKAIRRISAMPPEGFGISARNITISTVGIVPGIRRLMGEGIPVRLAVS 257

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVP+N+++    ++DA   Y  L+  RR++ EY ++KGIND    A  L
Sbjct: 258 LHAPDDELRDELVPMNKRFNTTQVLDAAHDYY-LATHRRVSIEYALMKGINDQAVHARLL 316

Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K L       A +N IP NP  G ++  S  +D   F + +  +G ++ +R  RG DI 
Sbjct: 317 AKRLNRYGDNWAHVNPIPLNPIEGSKWTASKPEDEARFLDILHEAGITATLRDTRGSDIN 376

Query: 360 AACGQLKS 367
            ACGQL +
Sbjct: 377 GACGQLAA 384


>gi|315604531|ref|ZP_07879594.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313543|gb|EFU61597.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 422

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/341 (35%), Positives = 177/341 (51%), Gaps = 20/341 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +  +     D   MSDI   +R  + +    + P +V + +S +      ++ 
Sbjct: 83  FRADQLSRHYFSHFEADPARMSDIPAGMREAVAE---ALLPHLVTKVVSLEADGGRTIKD 139

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
             R   G  ++E+V +    R TLCVSSQ GC + C FC TG   L RNL+  EI+ QV 
Sbjct: 140 LWRLYDG-AQVESVLMRYPQRTTLCVSSQAGCGMACPFCATGQMGLTRNLSTAEIVDQVR 198

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210
            A++       C D      P+    +SN+V MGMGEPL N+  V  +L   I     G 
Sbjct: 199 AAQA------SCRDGALAGGPTT---LSNVVFMGMGEPLANYKTVVAALHRLIDPAPEGF 249

Query: 211 SFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S R IT+ST G VP I ++ GE + V LA+SLHA  +DLR+ L+PIN ++ +  L+DA
Sbjct: 250 GMSARNITVSTVGLVPAIKKLAGEGMPVTLAVSLHAPDDDLRDDLIPINSRWKVGELLDA 309

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIP-AKINLIPFNPWPGCEY 326
            R Y  L+  RR++ EY ++K +ND    A  L   L  +G     +N IP NP PG  +
Sbjct: 310 ARGY-FLATGRRVSIEYALIKDMNDQEWRAQLLADELNRRGHGWVHVNPIPLNPTPGSIW 368

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             S ++    F   ++ +G ++ IR  RG DI  ACGQL +
Sbjct: 369 TASTRRAQHAFVSRLRDNGIATSIRDTRGSDIDGACGQLAT 409


>gi|159036879|ref|YP_001536132.1| radical SAM protein [Salinispora arenicola CNS-205]
 gi|205829873|sp|A8M6B6|RLMN_SALAI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157915714|gb|ABV97141.1| radical SAM enzyme, Cfr family [Salinispora arenicola CNS-205]
          Length = 380

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 176/343 (51%), Gaps = 25/343 (7%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCD--GTRK 87
           R R  Q+    + R +RD   M+D+    R  L      +++ P     +++CD   T K
Sbjct: 44  RFRARQVSTHYFGRLVRDSGQMTDLPAAAREKLTDRLLPTLLTPV---RELTCDDGATHK 100

Query: 88  WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
            L R     +     +E+V +    R T C+SSQ GC + C FC TG   L RNL+  EI
Sbjct: 101 ALWRLHDGSL-----VESVLMGYPDRVTACLSSQAGCGMACPFCATGQAGLTRNLSTAEI 155

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IAS 205
           + Q +    +               P    ++S +V MGMGEPL N++ V  ++   +A 
Sbjct: 156 VDQAVYLAGVA------ASGAVAGSPP---RLSRVVFMGMGEPLANYNRVVAAIRRLVAP 206

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264
              GL  S+R +T+ST G VP I R+  E++ V LA+SLHA  + LR+ LVP+N+++ + 
Sbjct: 207 APEGLGLSQRHVTVSTVGLVPAIRRLASEDLSVTLALSLHAPDDGLRDELVPVNQRWKVS 266

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
            +++    Y      RR++ EY M+K +ND P  A  L ++L G  A +NLIP NP PG 
Sbjct: 267 EVLETAWEY-AARTGRRVSIEYAMIKDVNDQPWRADLLGRLLAGKLAHVNLIPLNPTPGS 325

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +  S +     F   ++ +G S+ +R  RG +I  ACGQL +
Sbjct: 326 RWDASPKPVEREFVRRLRDAGVSTTVRDTRGREIDGACGQLAA 368


>gi|72382850|ref|YP_292205.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
           marinus str. NATL2A]
 gi|123746249|sp|Q46J26|RLMN_PROMT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|72002700|gb|AAZ58502.1| 23S rRNA m(2)A-2503 methyltransferase [Prochlorococcus marinus str.
           NATL2A]
          Length = 359

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 182/343 (53%), Gaps = 35/343 (10%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
            R  QI +WIY RG +    +S + ++ R  L+ +   I   + ++  ++ D T K L+ 
Sbjct: 33  FRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMG 92

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                  G + +ETV IP   R T+CVSSQ+GC + C FC TG   L R+L   EI+ QV
Sbjct: 93  ----TFDGEI-VETVGIPTDKRLTVCVSSQIGCPMGCKFCATGKGGLNRSLDVNEIVDQV 147

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +  R                  ++ R+ +++V MGMGEPL N  NV  S+   +  +G+ 
Sbjct: 148 ISVRE-----------------TMNRRPTHVVFMGMGEPLLNIRNVLDSIECLTSDIGIG 190

Query: 212 FSKRRITLSTSGFVPN----IARVGEE----IGVMLAISLHAVSNDLRNILVPINRKYPL 263
             +R+IT+ST G +PN    +A++ ++    +   LA+SLHA +  LR +++P    YP+
Sbjct: 191 --QRKITVSTVG-IPNTLSDLAKLAQDRLGRVKFTLAVSLHAPNQTLRELIIPSASSYPI 247

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
             L+  C+ Y  L+  RR++FEY++L G+ND    A  L  +++G  + +NLI +NP   
Sbjct: 248 NSLLKDCKKYIELT-GRRVSFEYILLGGLNDKDIHAEQLANLMRGFQSHVNLIAYNPIAE 306

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             +    Q  +  F E ++  G +  +R  RG D  AACGQL+
Sbjct: 307 ENFKRPSQSRVNAFRELLENRGVAVSVRASRGRDKDAACGQLR 349


>gi|219683780|ref|YP_002470163.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219621430|gb|ACL29587.1| radical SAM enzyme, Cfr family protein [Bifidobacterium animalis
           subsp. lactis AD011]
          Length = 393

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 107/272 (39%), Positives = 157/272 (57%), Gaps = 16/272 (5%)

Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           +IE+V +   +R TLC+SSQVGC + C FC TG   L RN++  EIL QV +A +++   
Sbjct: 127 KIESVLMRYPNRTTLCISSQVGCGMGCPFCATGQLGLTRNMSTGEILEQVRIAAAMME-- 184

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITL 219
                  G V    GR +SN+V MGMGEP+ N+  +  ++    A    G   S R IT+
Sbjct: 185 ------RGEVAGGPGR-LSNVVFMGMGEPMGNYRAIVSAVRQISAMPPEGFGISARNITV 237

Query: 220 STSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           ST G VP I R+ +E + V LA+SLHA +N LR+ LVP+NR++ ++ ++DA   Y  L++
Sbjct: 238 STVGVVPGIRRLAQEGMPVRLAVSLHAPNNALRDELVPMNRRFNVDEVLDAAHDYY-LAS 296

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIV 335
            RR++ EY +++GIND    A  L   L       A +N IP NP  G ++  S  +D  
Sbjct: 297 KRRVSIEYALMRGINDQEIHARQLANRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDER 356

Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            F E +  +G ++ +R  RG DI  ACGQL +
Sbjct: 357 RFLEILHNAGITATLRDTRGQDIDGACGQLAA 388


>gi|183601687|ref|ZP_02963057.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241190814|ref|YP_002968208.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196220|ref|YP_002969775.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183219293|gb|EDT89934.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249206|gb|ACS46146.1| hypothetical protein Balac_0778 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250774|gb|ACS47713.1| hypothetical protein Balat_0778 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793803|gb|ADG33338.1| hypothetical protein BalV_0750 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 398

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 107/272 (39%), Positives = 157/272 (57%), Gaps = 16/272 (5%)

Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           +IE+V +   +R TLC+SSQVGC + C FC TG   L RN++  EIL QV +A +++   
Sbjct: 132 KIESVLMRYPNRTTLCISSQVGCGMGCPFCATGQLGLTRNMSTGEILEQVRIAAAMME-- 189

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITL 219
                  G V    GR +SN+V MGMGEP+ N+  +  ++    A    G   S R IT+
Sbjct: 190 ------RGEVAGGPGR-LSNVVFMGMGEPMGNYRAIVSAVRQISAMPPEGFGISARNITV 242

Query: 220 STSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           ST G VP I R+ +E + V LA+SLHA +N LR+ LVP+NR++ ++ ++DA   Y  L++
Sbjct: 243 STVGVVPGIRRLAQEGMPVRLAVSLHAPNNALRDELVPMNRRFNVDEVLDAAHDYY-LAS 301

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIV 335
            RR++ EY +++GIND    A  L   L       A +N IP NP  G ++  S  +D  
Sbjct: 302 KRRVSIEYALMRGINDQEIHARQLANRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDER 361

Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            F E +  +G ++ +R  RG DI  ACGQL +
Sbjct: 362 RFLEILHNAGITATLRDTRGQDIDGACGQLAA 393


>gi|295396359|ref|ZP_06806525.1| cfr family radical SAM enzyme [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294970799|gb|EFG46708.1| cfr family radical SAM enzyme [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 441

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 185/402 (46%), Gaps = 50/402 (12%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L  +  EEL +A+   G+P      R  Q+    YV    D   M+D+  + R  L  
Sbjct: 45  QHLADLSLEELTQAVKDKGLPG----FRAKQLATHYYVHNTTDPADMTDLPADQREELAA 100

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F   +P ++ E           ++F  R   G + +E+V +  ++R TLCVSSQ GC +
Sbjct: 101 EF---FPPLLTEVRRLRTEDGDTIKFLWRLFDGAM-VESVLMRYRNRITLCVSSQCGCGM 156

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG--------------------------- 159
            C FC TG Q L RN++  EI+ QV+ A  ++                            
Sbjct: 157 NCPFCATGQQGLTRNMSTAEIVDQVIQANRVIAAGELAPTAGATTNYLGEEAAEVGSEAD 216

Query: 160 --------DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMG 209
                      G  +        V  +++N+V MGMGEPL N+  V  ++         G
Sbjct: 217 ASDNSATLQAAGTPETSATTSAGVHDRVTNVVFMGMGEPLANYKRVMNAVRRFTTPAPAG 276

Query: 210 LSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           L  S RRIT+ST G VP I ++  E I V  A+SLHA  +DLR+ ++P+N ++  +  ID
Sbjct: 277 LGMSPRRITVSTVGLVPGIKKLAAENIPVTFALSLHAPDDDLRDEMIPVNTRWNADEAID 336

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCE 325
           A   Y   +  RR++ EY ++K +ND    A  L K L         +N IP NP PG  
Sbjct: 337 AAYDY-YKTTGRRVSIEYALIKDMNDHAWRAELLAKKLNARGRGWVHVNPIPLNPTPGSV 395

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +  S+ +    F   + ++G  + IR  RG DI  ACGQL +
Sbjct: 396 WTASEPEVAAEFVRRLVKAGVPTTIRDTRGKDIDGACGQLAA 437


>gi|108803293|ref|YP_643230.1| hypothetical protein Rxyl_0444 [Rubrobacter xylanophilus DSM 9941]
 gi|122976140|sp|Q1AYW0|RLMN_RUBXD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|108764536|gb|ABG03418.1| conserved hypothetical protein [Rubrobacter xylanophilus DSM 9941]
          Length = 355

 Score =  179 bits (454), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 107/292 (36%), Positives = 154/292 (52%), Gaps = 24/292 (8%)

Query: 83  DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142
           DGTRK+L             IETV IPE+SR T+C+S+QVGC + C+FC TG   + RNL
Sbjct: 84  DGTRKYLF-----FTRDGHAIETVMIPERSRRTVCISTQVGCPMACTFCATGLLGIKRNL 138

Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202
            A EI  QV         F    DI          +++N+V+MGMGEP  N+    ++L 
Sbjct: 139 KAREIAEQV---------FAVARDI-------APERVTNVVVMGMGEPFLNYRETLRALR 182

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKY 261
           + +D  G + + R I +STSG V  I R  +E     LAISLH    + R  L+P+  ++
Sbjct: 183 VLNDRRGFNLAARHIAVSTSGLVDKIRRFADEPEQFHLAISLHTPFEEERRRLMPVAARH 242

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321
           P+  L++A R+Y   +  R++ FEY +L G+ND  R A  L ++L      +NL+ FN W
Sbjct: 243 PIPELMNAARYYVERTR-RKLFFEYTLLAGVNDRMRHAEALAELLDHPLYHLNLLRFN-W 300

Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
               +  +  +    F    +  G S+ +R  RG DI AACGQL +   R P
Sbjct: 301 TDTGFSATSARRAKEFLRRARELGLSATLRPSRGQDIEAACGQLAARDARSP 352


>gi|284032622|ref|YP_003382553.1| radical SAM enzyme, Cfr family [Kribbella flavida DSM 17836]
 gi|283811915|gb|ADB33754.1| radical SAM enzyme, Cfr family [Kribbella flavida DSM 17836]
          Length = 372

 Score =  179 bits (454), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 187/372 (50%), Gaps = 37/372 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67
           L  +  EE   A+  +G P      R  Q+    + R + D   M+D+    R  L+ + 
Sbjct: 22  LADLSGEERRAAVTALGEPA----FRAKQLSNHYFSRLVSDPAEMTDLPAASRDKLVAEL 77

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
              +  ++ D +     TRK L +     + G + +E+V +    R T+CVSSQ GC + 
Sbjct: 78  MPPLLTKVRDLECDNGQTRKSLWKL----LDGSL-VESVLMRYTDRTTMCVSSQAGCGMA 132

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVL-----LARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           C FC TG   L RN+T  EI+ QV+     L+R  +   PG              +++NI
Sbjct: 133 CPFCATGQAGLTRNMTTAEIVEQVVDGARALSRGEIAGGPG--------------RVNNI 178

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+  V  ++   +D    GL  S R IT+ST G VP I ++ GE I V L
Sbjct: 179 VFMGMGEPMANYKAVIGAVRRFTDPSPEGLGISARGITVSTVGLVPRINQLAGEGIPVTL 238

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ LVPIN ++ ++ ++DA   Y      RR++ EY M++ IND    A
Sbjct: 239 ALSLHAPDDELRDELVPINNRWKVDEVLDAAWGY-AQQTKRRVSIEYAMIRDINDHAWRA 297

Query: 300 LNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
             L + L          +NLIP NP PG ++  SD  D   F   ++  G  + +R  RG
Sbjct: 298 DLLAEKLAARGDWGWVHVNLIPLNPTPGSKWTASDPADEREFVRRLQAGGIPTTVRDTRG 357

Query: 356 LDILAACGQLKS 367
            +I  ACGQL +
Sbjct: 358 QEIDGACGQLAA 369


>gi|195953765|ref|YP_002122055.1| radical SAM enzyme, Cfr family [Hydrogenobaculum sp. Y04AAS1]
 gi|195933377|gb|ACG58077.1| radical SAM enzyme, Cfr family [Hydrogenobaculum sp. Y04AAS1]
          Length = 340

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 179/339 (52%), Gaps = 34/339 (10%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           + R SQI  W + + I D + M+DI + +R  L   F ++    +D  +  + + K++ +
Sbjct: 19  KYRISQIKSWAFKKKITDIELMTDIPKSLRQELKIDFHVLS---LDSFLEGEDSTKFVFK 75

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                      +E+V I EK   TLC+S+Q+GC++ C FC +    L+RNL+  EI+ Q 
Sbjct: 76  -----TKDGYFVESVLIKEKDHYTLCISTQIGCAVGCKFCVSTIGGLLRNLSFSEIVDQY 130

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
                L   F                 I NIV MGMGEPL NF+N+KK+  I      L 
Sbjct: 131 FYISILRNTF-----------------IRNIVFMGMGEPLANFENLKKASFIFLKEFEL- 172

Query: 212 FSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
            SKR IT+STS +   I ++ E+     + LAISL+A  ++ R  L+P N    L+ L +
Sbjct: 173 -SKRHITISTSAYTNYIKKLKEDSFLNKLNLAISLNASDDETRKALMP-NVIGSLKELFE 230

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWPGCEY 326
             + YP L   RRIT EYV++K IN S +DA NL+ +LK +    K+NLIP+N  P   +
Sbjct: 231 ILKTYP-LEPRRRITIEYVLIKDINSSLKDAKNLVNLLKNLKHKTKVNLIPYNENPMLSF 289

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               + DI  F + + ++  S  IR  +GL++ AACG L
Sbjct: 290 ERPVESDIYRFQQELLKNDISCTIRWSKGLELAAACGHL 328


>gi|330837064|ref|YP_004411705.1| radical SAM enzyme, Cfr family [Spirochaeta coccoides DSM 17374]
 gi|329748967|gb|AEC02323.1| radical SAM enzyme, Cfr family [Spirochaeta coccoides DSM 17374]
          Length = 359

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 176/353 (49%), Gaps = 28/353 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF-SIIYPEIVDEKISCDGTRKWLLR 91
            R  QI  W+  RG   F GMS++S   R  L + +  I+  E+++EK    G  K  +R
Sbjct: 32  FRARQIRSWL-ARGTTSFTGMSNLSLLERTRLTEKYPHILTSEVIEEKTDRTGATKLGIR 90

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                  G V    + + +  R T C+S QVGC++ C FC TGT  L RNL A EI+ Q 
Sbjct: 91  L----YDGLVVECVLLVDQDGRKTACLSCQVGCAMGCVFCRTGTMGLARNLHAYEIVEQF 146

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +              +     PS      +IV MGMGEPL N   V  S+   +      
Sbjct: 147 V-------------HLMKYGTPS------HIVYMGMGEPLANTKEVFSSVLTLNSPDWFD 187

Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
              RRIT+ST G VP I ++ E  +GV LAISL A  + LR  L+P+NR +PL  L +  
Sbjct: 188 IGIRRITISTCGIVPGILQLAESGLGVKLAISLVAADDQLRTRLMPVNRSFPLIRLKETL 247

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
             Y      +RITFEY ML G+N     A NL   +KG+ A +NLIP+NP P   +    
Sbjct: 248 VTYQK-KEKKRITFEYCMLGGVNTDETAARNLAHFMKGLEAIVNLIPWNPAPDLPWQTPS 306

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
            +++ +F   ++R G     R  RG  +  ACGQL ++ + +  +P ++ Q T
Sbjct: 307 NREMDSFVSTLQRLGVPCTRRFSRGRGVDGACGQL-AVPQNMRTLPPEDTQGT 358


>gi|123966894|ref|YP_001011975.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
           MIT 9515]
 gi|205829807|sp|A2BYK7|RLMN_PROM5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123201260|gb|ABM72868.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
           MIT 9515]
          Length = 348

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 126/380 (33%), Positives = 187/380 (49%), Gaps = 51/380 (13%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV------ 60
           ++L+G   ++LE   L  G        R  QI+ W+Y     +++  S    E+      
Sbjct: 2   KNLLGCSVKDLENVALNYG----QAAFRGRQIYSWLY-----NYKNRSKSIDEINVLPLN 52

Query: 61  -RHLLNQHFSIIYPEIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
            R+ L +   I    I+ EK ++ DGT K LL            +E V IP + R T C+
Sbjct: 53  FRNQLKKEGFIFGELILKEKYLANDGTLKLLLN-----TRDNESVECVGIPTEKRLTACL 107

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC + C FC TG + L R+L A EIL Q+L   +                  + +K
Sbjct: 108 SSQVGCPMDCKFCATGKEGLKRSLKASEILDQILFIEN-----------------EMNQK 150

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           ++NIV MGMGEPL N D +    SI S +     S+RRIT+ST   +PN+ R   E+   
Sbjct: 151 VTNIVFMGMGEPLLNIDEL--LFSIRSINEDFDVSQRRITVSTVA-IPNMIRKLSEMSFQ 207

Query: 239 --------LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
                   LAISLHA +   R  ++P  + Y ++ +ID CR +   +  RR++FEY+ML 
Sbjct: 208 VLGKCQFTLAISLHASNQKTRETIIPSAKNYHIKYIIDDCREFVKKT-GRRVSFEYLMLH 266

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           G+ND    A  L  ++KG    +NLI +N     E+  +  K+   F   +  +G +  +
Sbjct: 267 GVNDKLEHADELSNLIKGFQCHVNLIQYNQIEEVEFKQTPSKNAQLFQNRLSNNGINVSL 326

Query: 351 RTPRGLDILAACGQLKSLSK 370
           R  RG D  AACGQL+  +K
Sbjct: 327 RKSRGSDRNAACGQLRQNAK 346


>gi|283457572|ref|YP_003362155.1| putative Fe-S-cluster redox enzyme [Rothia mucilaginosa DY-18]
 gi|283133570|dbj|BAI64335.1| predicted Fe-S-cluster redox enzyme [Rothia mucilaginosa DY-18]
          Length = 419

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 179/342 (52%), Gaps = 13/342 (3%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R SQ+ K  + R + D   M+D+  + R    Q  +   P+++    + +      L+ 
Sbjct: 81  FRASQLSKHYFERLVTDPAEMTDLPAKDRE---QMVAQAMPQLLTPVRTLEADGGDTLKV 137

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
             R   G + IE+V +   +R T+C+SSQ GC + C FC TG Q L RNL+  EI+ QV+
Sbjct: 138 VHRLFDGAL-IESVIMRYDNRVTMCISSQAGCGMNCPFCATGQQGLTRNLSTAEIVEQVV 196

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210
                L    G E+ EG    +   ++SNIV MGMGE L N+     ++   I     GL
Sbjct: 197 AGARYLKQMKGLEEAEGGSEDTRPLRVSNIVFMGMGEALANYKATMGAVHRLIDPSPEGL 256

Query: 211 SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S R +T+ST G VP I +   E++ + LA+SLHA  ++LR+ L+PIN+++ ++  +DA
Sbjct: 257 GISARGLTMSTVGLVPGIRKFELEKLPITLALSLHAPDDELRDELIPINQRWKVDETLDA 316

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL----KGIPAKINLIPFNPWPGCE 325
              Y   +  RR++ EY +++ IND    A  L K L    +G    +N IP NP PG +
Sbjct: 317 AYDY-YRTTGRRVSIEYALIRDINDQGWRADLLGKKLAQRGRGW-VHVNPIPLNPTPGSK 374

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +  S +     F E ++  G  + IR  RG DI  ACGQL +
Sbjct: 375 WTASRKGVEQNFVERLRAHGIPTTIRDTRGSDIDGACGQLAA 416


>gi|160947211|ref|ZP_02094378.1| hypothetical protein PEPMIC_01144 [Parvimonas micra ATCC 33270]
 gi|158446345|gb|EDP23340.1| hypothetical protein PEPMIC_01144 [Parvimonas micra ATCC 33270]
          Length = 348

 Score =  179 bits (453), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 191/358 (53%), Gaps = 37/358 (10%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ----HFSI 70
           EELE+  L +G      + R  Q +++++ +   + +    + + +   L +    + S 
Sbjct: 14  EELEDLFLSLG----EKKFRAEQFFRFMHQKKNFEIENCKQLPKVLIEKLKEIGYINTSS 69

Query: 71  IYPEIVDEKISCDGTRKWLLR-FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           IY +   +    D T+K+L++ F  R I      ETV++   S  T+C+SSQVGC + C+
Sbjct: 70  IYTKYESK---LDNTKKYLIKLFDNRII------ETVFMDYGSYCTVCISSQVGCRMGCT 120

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +  +   RNLT+ E+L Q+ L  +                  +   I+N+V+MG+GE
Sbjct: 121 FCASTKENFKRNLTSGEMLNQIYLIEN-----------------DLNLTINNVVIMGIGE 163

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           PL N++NV   L I +   G + S R IT+ST G V NI ++ +E + + L ISLH    
Sbjct: 164 PLDNYNNVIGFLKIINSEKGKNLSLRNITISTCGLVHNIYKLADEKLPITLTISLHNPFQ 223

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
             R  ++PI+  + ++ ++ AC++Y   + +RR++FEY ++KG NDS   AL L  ILKG
Sbjct: 224 KERREIMPISDNFSIDEILKACKYYFDKT-SRRVSFEYTIIKGQNDSREHALELKNILKG 282

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +   IN+IP N     + +    K I +F   ++  G ++ IR  +G DI  ACGQL+
Sbjct: 283 LNCHINIIPLNSIKEFDGVAPSTKYIYSFKSMLENYGINATIRKKQGDDINGACGQLR 340


>gi|257068200|ref|YP_003154455.1| ribosomal RNA large subunit methyltransferase N [Brachybacterium
           faecium DSM 4810]
 gi|256559018|gb|ACU84865.1| radical SAM enzyme, Cfr family [Brachybacterium faecium DSM 4810]
          Length = 429

 Score =  179 bits (453), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 123/359 (34%), Positives = 189/359 (52%), Gaps = 33/359 (9%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLNQHFSIIYPEIVDE 78
           A+ ++G+P      R  Q+    +       + ++D+ ++ R  L+ + F  +  ++  +
Sbjct: 66  AVEEMGLPG----FRAKQLSVHYFEHFTTAAEDLTDLPRDRRDELVERFFPPLLTQVSRQ 121

Query: 79  KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138
                 T+K+L +       GP+ +E+V +    R TLC+SS+ GC + C FC TG   L
Sbjct: 122 SADHGATQKFLWQL----FDGPM-VESVLMRYSDRNTLCISSEAGCGMNCPFCATGQMGL 176

Query: 139 VRNLTAEEILLQVLLARSLLG--DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
            RNL+A EIL QV +A  +L   + PG            GR ++NIV MGMGEPL N+  
Sbjct: 177 TRNLSAAEILEQVRIANRMLAREELPG----------GPGR-VNNIVFMGMGEPLANYRP 225

Query: 197 VK---KSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRN 252
           V    K L+ A    G     R IT+ST G  P + ++  E+I V LA+SLHA  + LR+
Sbjct: 226 VATVCKRLN-APAPEGFGMGARHITVSTVGLAPAVRKLTAEKIPVTLAVSLHAPDDALRD 284

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK--ILKGIP 310
            LVPIN ++ ++ ++DA   Y   +  RR++ EY +++ IND    A  L +  I KG  
Sbjct: 285 ELVPINTRFDVDEILDAAWEY-FEATGRRVSIEYALIRDINDQQHRAQLLAERLIAKGGA 343

Query: 311 --AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
               +N IP NP  G ++  SD +   TF E ++ +G S+ IR  RG DI  ACGQL +
Sbjct: 344 HWVHVNPIPLNPVKGSKWTASDPQVEKTFVETLRDNGISATIRDTRGSDIDGACGQLAA 402


>gi|255326866|ref|ZP_05367942.1| radical SAM enzyme, Cfr family [Rothia mucilaginosa ATCC 25296]
 gi|255296083|gb|EET75424.1| radical SAM enzyme, Cfr family [Rothia mucilaginosa ATCC 25296]
          Length = 404

 Score =  179 bits (453), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 179/342 (52%), Gaps = 13/342 (3%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R SQ+ K  + R + D   M+D+  + R    Q  +   P+++    + +      L+ 
Sbjct: 66  FRASQLSKHYFERLVTDPAEMTDLPAKDRE---QMVAQAMPQLLTPVRTLEADGGDTLKV 122

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
             R   G + IE+V +   +R T+C+SSQ GC + C FC TG Q L RNL+  EI+ QV+
Sbjct: 123 VHRLFDGAL-IESVIMRYDNRVTMCISSQAGCGMNCPFCATGQQGLTRNLSTAEIVEQVV 181

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210
                L    G E+ EG    +   ++SNIV MGMGE L N+     ++   I     GL
Sbjct: 182 AGARYLKQMKGLEEAEGGSEDTRPLRVSNIVFMGMGEALANYKATMGAVHRLIDPSPEGL 241

Query: 211 SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S R +T+ST G VP I +   E++ + LA+SLHA  ++LR+ L+PIN+++ ++  +DA
Sbjct: 242 GISARGLTMSTVGLVPGIRKFELEKLPITLALSLHAPDDELRDELIPINQRWKVDETLDA 301

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL----KGIPAKINLIPFNPWPGCE 325
              Y   +  RR++ EY +++ IND    A  L K L    +G    +N IP NP PG +
Sbjct: 302 AYDY-YRTTGRRVSIEYALIRDINDQGWRADLLGKKLAQRGRGW-VHVNPIPLNPTPGSK 359

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +  S +     F E ++  G  + IR  RG DI  ACGQL +
Sbjct: 360 WTASRKGVEQNFVERLRAHGIPTTIRDTRGSDIDGACGQLAA 401


>gi|152965388|ref|YP_001361172.1| ribosomal RNA large subunit methyltransferase N [Kineococcus
           radiotolerans SRS30216]
 gi|205829778|sp|A6W7W9|RLMN_KINRD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|151359905|gb|ABS02908.1| radical SAM enzyme, Cfr family [Kineococcus radiotolerans SRS30216]
          Length = 391

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 155/282 (54%), Gaps = 22/282 (7%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDF 161
           +E+V +  K+R T+C+SSQ GC + C FC TG   L RNL+  EI+ QV  A R+L  D 
Sbjct: 123 VESVLMRYKNRDTICISSQAGCGMNCPFCATGQAGLTRNLSTAEIVEQVTAASRALARD- 181

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSIASDSMGLSFSKRRI 217
                     +P    ++SN+V MGMGE L N+ +    V++ +S A D  GL  S R +
Sbjct: 182 ---------EVPGGPGRVSNVVFMGMGEALANYKSAVAAVRRLVSPAPD--GLGISARGV 230

Query: 218 TLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           T+ST G VP I +  +E I   LA+SLHA  ++LR+ LVPIN+++ +   +DA R Y   
Sbjct: 231 TMSTVGLVPAIDKFAQEGIAATLALSLHAPDDELRDELVPINQRWKVGEALDAARRY-FE 289

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKD 333
           +  RR++ EY ++K IND    A  L K+L         +N IP NP PG ++  SD   
Sbjct: 290 ATGRRVSIEYALIKDINDQAWRADRLGKLLNARGRGWVHVNPIPLNPTPGSKWTASDPAV 349

Query: 334 IVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
              F   ++  G  + +R  RG DI  ACGQL ++    P+ 
Sbjct: 350 ERAFVAALENRGIPTTVRDTRGSDIDGACGQLAAIGPEQPRA 391


>gi|227503385|ref|ZP_03933434.1| possible Fe-S-cluster redox protein [Corynebacterium accolens ATCC
           49725]
 gi|306836373|ref|ZP_07469351.1| cfr family radical SAM enzyme [Corynebacterium accolens ATCC 49726]
 gi|227075888|gb|EEI13851.1| possible Fe-S-cluster redox protein [Corynebacterium accolens ATCC
           49725]
 gi|304567733|gb|EFM43320.1| cfr family radical SAM enzyme [Corynebacterium accolens ATCC 49726]
          Length = 374

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 184/359 (51%), Gaps = 37/359 (10%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--- 75
           + L +IG+P    + R  QI K  Y     D + M+DI    R  + + F   +PE+   
Sbjct: 35  DKLAEIGLP----KFRAKQIAKHYYEHLTDDVEEMTDIPAGKREEVKEAF---FPELMKP 87

Query: 76  VDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
           +    + DG T K L R     +     +E+V +    R TLC+SSQ GC + C FC TG
Sbjct: 88  IRTTSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQAGCGMACPFCATG 142

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNL+  EI+ Q   A +               + + G ++SN+V MGMGEPL N+
Sbjct: 143 QGGLDRNLSTGEIVEQFRHAAA--------------AMAAEGGRLSNVVFMGMGEPLANY 188

Query: 195 DNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLR 251
             V +++      D  G   S+R +T+ST G  P I ++  E++   LA+SLH   ++LR
Sbjct: 189 KRVVQAVRQITGQDGTGFGLSQRNVTVSTVGLAPAIRKLADEDLACTLAVSLHTPDDELR 248

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---G 308
           + LVP+N ++ ++ ++DA R+Y   S ARR++ EY +++  ND    A  L + L    G
Sbjct: 249 DSLVPVNNRWSVDEVLDAARYYADKS-ARRVSIEYALIRDKNDQDFRADMLGRKLHQKLG 307

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
               +N+IP NP PG E+  + +  +  F   ++  G    +R  +G +I AACGQL +
Sbjct: 308 SKVHVNVIPLNPTPGSEWDAAPKARLNEFVRRVQAQGVPCTVRDTKGDEIAAACGQLAA 366


>gi|289178553|gb|ADC85799.1| Radical SAM family enzyme [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 430

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/272 (39%), Positives = 157/272 (57%), Gaps = 16/272 (5%)

Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           +IE+V +   +R TLC+SSQVGC + C FC TG   L RN++  EIL QV +A +++   
Sbjct: 164 KIESVLMRYPNRTTLCISSQVGCGMGCPFCATGQLGLTRNMSTGEILEQVRIAAAMME-- 221

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITL 219
                  G V    GR +SN+V MGMGEP+ N+  +  ++    A    G   S R IT+
Sbjct: 222 ------RGEVAGGPGR-LSNVVFMGMGEPMGNYRAIVSAVRQISAMPPEGFGISARNITV 274

Query: 220 STSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           ST G VP I R+ +E + V LA+SLHA +N LR+ LVP+NR++ ++ ++DA   Y  L++
Sbjct: 275 STVGVVPGIRRLAQEGMPVRLAVSLHAPNNALRDELVPMNRRFNVDEVLDAAHDYY-LAS 333

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIV 335
            RR++ EY +++GIND    A  L   L       A +N IP NP  G ++  S  +D  
Sbjct: 334 KRRVSIEYALMRGINDQEIHARQLANRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDER 393

Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            F E +  +G ++ +R  RG DI  ACGQL +
Sbjct: 394 RFLEILHNAGITATLRDTRGQDIDGACGQLAA 425


>gi|331698480|ref|YP_004334719.1| ribosomal RNA large subunit methyltransferase N [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953169|gb|AEA26866.1| Ribosomal RNA large subunit methyltransferase N [Pseudonocardia
           dioxanivorans CB1190]
          Length = 368

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 182/362 (50%), Gaps = 31/362 (8%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
           + A+  +G+P      R  Q+ +  + R   D   M+D+    R  L      +   + +
Sbjct: 29  KAAVADLGLPG----FRADQLARHYFGRLTADVDEMTDLPAAARETLASLLPPLVTPVTE 84

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
           +      TRK L R     +      E+V +    R T+C+SSQ GC + C FC TG   
Sbjct: 85  QSCDEGATRKMLWRGHDGALA-----ESVLMAYPDRATVCISSQAGCGMACPFCATGQGG 139

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
           L RNL+  EI+ QV  A +   D    E +          ++SNIV MGMGEPL N+  V
Sbjct: 140 LQRNLSTGEIVDQVRQAAAAARDGALGEPM----------RLSNIVFMGMGEPLANYKRV 189

Query: 198 KKSL----SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
             +L    S A D  GL  S R IT+ST G V  I ++  E + V LA+SLH   ++LR+
Sbjct: 190 VAALRRITSPAPD--GLGISPRGITVSTVGLVQAIDKLAAEGLPVTLAVSLHTPDDELRD 247

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GI 309
            LVP+N ++ +  ++DA R Y   +  RR++ EY +++ +ND P  A  L K+L+   G 
Sbjct: 248 TLVPVNNRWKVGEVLDAARRY-AQATGRRVSIEYALIRDVNDQPWRADLLGKLLRQRVGT 306

Query: 310 P-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
               +NLIP NP PG E+  S +     F   ++ +G +  +R  RG +I AACGQL + 
Sbjct: 307 KRVHVNLIPLNPTPGSEWDASPRPVQDEFVRRVQAAGVACTVRDTRGQEIDAACGQLAAT 366

Query: 369 SK 370
            +
Sbjct: 367 HR 368


>gi|227549023|ref|ZP_03979072.1| possible Fe-S-cluster redox protein [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078877|gb|EEI16840.1| possible Fe-S-cluster redox protein [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 367

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 185/366 (50%), Gaps = 31/366 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSI 70
           + +EE  EAL ++G+P    + R  QI +  Y +   D   M+D+ +  R L+    F  
Sbjct: 24  LSKEERIEALAELGLP----KFRADQIARHYYGKFQADPLTMTDLPESQRQLVKDALFPT 79

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
           +  EI   +     T K L R     +   + +E+V +    R TLC+SSQ GC + C F
Sbjct: 80  LLTEIRSLETDEGDTTKTLWR-----LHDGILLESVLMRYPDRATLCISSQAGCGMACPF 134

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TG   L RNL+  EI+ QV  A + +               + G ++SNIV MGMGEP
Sbjct: 135 CATGQGGLDRNLSTAEIVDQVRAAAARMH--------------AEGSRLSNIVFMGMGEP 180

Query: 191 LCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           L N++ V  ++   +     G   S+R +T+ST G  P I ++ +E +   LA+SLH   
Sbjct: 181 LANYNRVVSAVRQITQPTPDGFGISQRNVTVSTVGLAPQIRKLADEGLSCTLAVSLHTPD 240

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           ++LR+ LVP+N ++ +  +++A  +Y      RR++ EY +++ IND    A  L + L 
Sbjct: 241 DELRDELVPMNNRFSVADVLEAASYY-AEQTGRRVSIEYALIRDINDHDFRADMLGRKLH 299

Query: 308 ---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
              G    +NLIP NP PG ++  S +     F   +   G +  +R  +G +I AACGQ
Sbjct: 300 DALGSKVHVNLIPLNPTPGSKWDASPRARQDEFVRRVIAQGVTCTVRDTKGQEIAAACGQ 359

Query: 365 LKSLSK 370
           L +  K
Sbjct: 360 LAAEEK 365


>gi|291335247|gb|ADD94867.1| putative Fe S cluster redox protein [uncultured marine bacterium
           MedDCM-OCT-S09-C145]
          Length = 348

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 183/379 (48%), Gaps = 49/379 (12%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR----- 61
           ++L+G   ++LE   L  G        R  QI+ W+Y     +++  S    E+      
Sbjct: 2   KNLLGCSVKDLESLALNFG----QAAFRGRQIYSWLY-----NYKNRSKSIDEINVLPLK 52

Query: 62  ---HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
               L N+ F      + ++ ++ DGT K LL            +E V IP + R T C+
Sbjct: 53  FRDQLKNEAFLFGELTLNEKYLATDGTLKLLLN-----TRDNESVECVGIPTEKRLTACL 107

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC + C FC TG + L R+L A EIL Q+L   +                  + +K
Sbjct: 108 SSQVGCPMDCKFCATGKEGLKRSLKASEILDQILFIEN-----------------QMNQK 150

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE----- 233
           +SNIV MGMGEPL N D +   LSI S +     S+R+IT+ST      I+++ +     
Sbjct: 151 VSNIVFMGMGEPLLNIDEL--LLSIRSINEDFDISQRKITVSTVAIPKMISKLSKLSFQV 208

Query: 234 --EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
             +    LAISLHA +  +R  ++P  + Y ++ +ID CR Y      RR++FEY+ML G
Sbjct: 209 LGKCQFTLAISLHASNQKIREAIIPSAKNYHIKNIIDDCREYVR-ETGRRVSFEYLMLHG 267

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
           +ND    A  L  ++KG    +NLI +N     E+  +  K+   F   +  SG +   R
Sbjct: 268 VNDKLEHADELSNLIKGFQCHVNLIQYNHIEEVEFKQTPTKNAQLFQTRLSNSGINVSFR 327

Query: 352 TPRGLDILAACGQLKSLSK 370
             RG D  AACGQL+   K
Sbjct: 328 KSRGSDRNAACGQLRQNEK 346


>gi|19553223|ref|NP_601225.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
           glutamicum ATCC 13032]
 gi|62390859|ref|YP_226261.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
           glutamicum ATCC 13032]
 gi|81760328|sp|Q8NP06|RLMN_CORGL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|21324790|dbj|BAB99413.1| Predicted Fe-S-cluster redox enzyme [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326198|emb|CAF20360.1| Predicted Fe-S-cluster redox enzyme [Corynebacterium glutamicum
           ATCC 13032]
          Length = 366

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/357 (33%), Positives = 182/357 (50%), Gaps = 33/357 (9%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIV 76
           EAL ++G+P    + R +QI +  Y R   D   M+D+ +  R  +      +++ P  V
Sbjct: 31  EALKELGLP----KFRLNQIARHYYGRLEADPLTMTDLPEGARQEVKDALFPTLMSPLRV 86

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
            E    D T+K L +     +     +E+V +    R TLC+SSQ GC + C FC TG  
Sbjct: 87  VE-TDDDTTQKTLWKLHDGTL-----LESVLMRYSDRSTLCISSQAGCGMACPFCATGQG 140

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
            L RNL+  EI+ QV  A                 + S G ++SNIV MGMGEPL N+  
Sbjct: 141 GLDRNLSIGEIVDQVRNA--------------AATMQSEGGRLSNIVFMGMGEPLANYKR 186

Query: 197 VKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNI 253
           V  ++         G   S+R +T+ST G  P I ++  EE+ V LA+SLH   ++LR+ 
Sbjct: 187 VVSAVRQITQPSPAGFGISQRSVTVSTVGLAPAIRKLADEEMSVTLAVSLHTPDDELRDT 246

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIP 310
           LVP+N ++P+  ++DA R+Y   S  RR++ EY +++ +ND    A  L + L    G  
Sbjct: 247 LVPVNNRWPVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQDWRADMLGEKLHKALGSR 305

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             +NLIP NP PG ++  + +     F   +   G    +R  +G +I AACGQL +
Sbjct: 306 VHVNLIPLNPTPGSKWDAAPKARQDEFVRRVIAKGVPCTVRDTKGQEIAAACGQLAA 362


>gi|311739708|ref|ZP_07713543.1| cfr family radical SAM enzyme [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305524|gb|EFQ81592.1| cfr family radical SAM enzyme [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 374

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 182/359 (50%), Gaps = 37/359 (10%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD- 77
           + L +IG+P    + R  Q+ K  Y     + + M+DI    R  + + F   +PE++  
Sbjct: 35  DKLAEIGLP----KFRAKQLAKHYYEHYTDNVEDMTDIPAGKREAVKEAF---FPELMQP 87

Query: 78  -EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
               S D   T K L R     +     +E+V +    R TLC+SSQ GC + C FC TG
Sbjct: 88  IRTTSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQAGCGMACPFCATG 142

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNL+  EI+ Q   A +               + + G ++SN+V MGMGEPL N+
Sbjct: 143 QGGLDRNLSTGEIVEQFRHAAA--------------AMAAEGGRLSNVVFMGMGEPLANY 188

Query: 195 DNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLR 251
             V +++      D  G   S+R +T+ST G  P I ++  E++   LA+SLH   ++LR
Sbjct: 189 KRVVQAVRQITGQDGAGFGLSQRNVTVSTVGLAPAIRKLADEDLACTLAVSLHTPDDELR 248

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---G 308
           + LVP+N ++ ++ ++DA R+Y   S ARR++ EY +++  ND    A  L + L    G
Sbjct: 249 DGLVPVNNRWSVDEVLDAARYYADKS-ARRVSIEYALIRDKNDQDFRADMLGRKLHQKLG 307

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
               +N+IP NP PG E+  + Q     F   ++  G    +R  +G +I AACGQL +
Sbjct: 308 SKVHVNVIPLNPTPGSEWDAAPQDRQDEFVRRVQAQGVPCTVRDTKGDEIAAACGQLAA 366


>gi|33862037|ref|NP_893598.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|81575609|sp|Q7V010|RLMN_PROMP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33634255|emb|CAE19940.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 348

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 184/379 (48%), Gaps = 49/379 (12%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR----- 61
           ++L+G   ++LE+  L  G        R  QI+ W+Y     +++  S    E+      
Sbjct: 2   KNLLGCSVKDLEKIALNYG----QAAFRGRQIYNWLY-----NYKNRSKSIDEINVLPLK 52

Query: 62  ---HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
               L N+ F      + ++ ++ DGT K LL            +E V IP + R T C+
Sbjct: 53  FRDQLKNEAFLFGELTLKEKYLATDGTLKLLLN-----TRDNESVECVGIPTEKRLTACL 107

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC + C FC TG + L R+L   EIL Q+L   +                  + +K
Sbjct: 108 SSQVGCPMDCKFCATGKEGLKRSLKVSEILDQILFIEN-----------------QMNQK 150

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE----- 233
           +SNIV MGMGEPL N D +   LSI S +   + S+R+IT+ST      I+++ E     
Sbjct: 151 VSNIVFMGMGEPLLNIDEL--LLSIRSINEDFAISQRKITVSTVAIPKMISKLSELSFQV 208

Query: 234 --EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
             +    LAISLHA +  +R  ++P  + Y ++ +ID CR Y      RR++FEY+ML G
Sbjct: 209 LGKCQFTLAISLHASNQKIREAIIPSAKNYHIKNIIDDCREYVR-ETGRRVSFEYLMLHG 267

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
           +ND    A  L  ++KG    +NLI +N     E+  +  K+   F   +  SG +   R
Sbjct: 268 VNDKLEHADELSNLIKGFQCHVNLIQYNHIEEVEFKQTPIKNAQLFQTRLSNSGINVSFR 327

Query: 352 TPRGLDILAACGQLKSLSK 370
             RG D  AACGQL+   K
Sbjct: 328 KSRGSDRNAACGQLRQNDK 346


>gi|255085148|ref|XP_002505005.1| predicted protein [Micromonas sp. RCC299]
 gi|226520274|gb|ACO66263.1| predicted protein [Micromonas sp. RCC299]
          Length = 375

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 193/376 (51%), Gaps = 43/376 (11%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI----SQEVRHL 63
           +L+GM   EL+    + G+P    + R  Q+   +Y  G++  + + D+        R L
Sbjct: 23  NLLGMTLPELKTFAEEAGLP----KFRGKQLRDHLY--GVKPAKNIDDLVTLPKAARRQL 76

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG----TLCVS 119
           L+   S+    +     S DGT K LLR     +     +ETV IP    G    T CVS
Sbjct: 77  LDAGVSVGRSVVHHVAGSPDGTTKLLLRLHDDRV-----VETVGIPAHEAGHRRLTACVS 131

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC + C+FC TG     RNL   EI+ QV+   SL   F              G ++
Sbjct: 132 SQVGCPMRCTFCATGKGGFARNLATHEIVDQVV---SLEEHF--------------GERV 174

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238
           ++IV MGMGEPL N  NV ++    +  +G+    R IT+ST G    I R+   ++   
Sbjct: 175 THIVFMGMGEPLLNVPNVLRAHEALNKEVGI--GSRHITISTVGVRGAIERLARAKLQST 232

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLHA + +LR  L+P  + YP++ L++  + Y  ++  RR+TFEY +L G+NDS + 
Sbjct: 233 LAISLHAPNQELRERLIPSAKAYPMQELLNDAQQY-FIATGRRVTFEYTLLAGVNDSIQQ 291

Query: 299 ALNLIKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           A  L ++L    + + +N+IP+NP     ++    +  I+ F   +++    + IR  RG
Sbjct: 292 AEELGRLLYKNKLASHVNIIPYNPVDDAPDFKRPGRASILNFRNTLEQMNVPASIRQSRG 351

Query: 356 LDILAACGQLKSLSKR 371
           L+  AACGQL++  ++
Sbjct: 352 LEAAAACGQLRNAYQK 367


>gi|255325234|ref|ZP_05366340.1| radical SAM enzyme, Cfr family [Corynebacterium tuberculostearicum
           SK141]
 gi|255297799|gb|EET77110.1| radical SAM enzyme, Cfr family [Corynebacterium tuberculostearicum
           SK141]
          Length = 366

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 181/359 (50%), Gaps = 37/359 (10%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD- 77
           + L +IG+P    + R  Q+ K  Y     + + M+DI    R  + + F   +PE++  
Sbjct: 27  DKLAEIGLP----KFRAKQLAKHYYEHYTDNVEDMTDIPAGKREAVKEAF---FPELMQP 79

Query: 78  -EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
               S D   T K L R     +     +E+V +    R TLC+SSQ GC + C FC TG
Sbjct: 80  IRTTSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQAGCGMACPFCATG 134

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNL+  EI+ Q   A                 + + G ++SN+V MGMGEPL N+
Sbjct: 135 QGGLDRNLSTGEIVEQFRHAA--------------AAMAAEGGRLSNVVFMGMGEPLANY 180

Query: 195 DNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLR 251
             V +++      D  G   S+R +T+ST G  P I ++  E++   LA+SLH   ++LR
Sbjct: 181 KRVVQAVRQITGQDGAGFGLSQRNVTVSTVGLAPAIRKLADEDLACTLAVSLHTPDDELR 240

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---G 308
           + LVP+N ++ ++ ++DA R+Y   S ARR++ EY +++  ND    A  L + L    G
Sbjct: 241 DGLVPVNNRWSVDEVLDAARYYADKS-ARRVSIEYALIRDKNDQDFRADMLGRKLHQKLG 299

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
               +N+IP NP PG E+  + Q     F   ++  G    +R  +G +I AACGQL +
Sbjct: 300 SKVHVNVIPLNPTPGSEWDAAPQDRQDEFVRRVQAQGVPCTVRDTKGDEIAAACGQLAA 358


>gi|145295923|ref|YP_001138744.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
           glutamicum R]
 gi|205829740|sp|A4QF26|RLMN_CORGB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|140845843|dbj|BAF54842.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 366

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 182/357 (50%), Gaps = 33/357 (9%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIV 76
           EAL ++G+P    + R +QI +  Y R   D   M+D+ +  R  +      +++ P  V
Sbjct: 31  EALKELGLP----KFRLNQIARHYYGRLEADPLTMTDLPEGARQEVKDALFPTLMSPLRV 86

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
            E    D T+K L +     +     +E+V +    R TLC+SSQ GC + C FC TG  
Sbjct: 87  IE-TDDDTTQKTLWKLHDGTL-----LESVLMRYSDRSTLCISSQAGCGMACPFCATGQG 140

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
            L RNL+  EI+ QV  A                 + + G ++SNIV MGMGEPL N+  
Sbjct: 141 GLDRNLSIGEIVDQVRNA--------------AATMQAEGGRLSNIVFMGMGEPLANYKR 186

Query: 197 VKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNI 253
           V  ++         G   S+R +T+ST G  P I ++  EE+ V LA+SLH   ++LR+ 
Sbjct: 187 VVSAVRQITQPSPAGFGISQRSVTVSTVGLAPAIRKLADEEMSVTLAVSLHTPDDELRDT 246

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIP 310
           LVP+N ++P+  ++DA R+Y   S  RR++ EY +++ +ND    A  L + L    G  
Sbjct: 247 LVPVNNRWPVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQDWRADMLGEKLHKALGSR 305

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             +NLIP NP PG ++  + +     F   +   G    +R  +G +I AACGQL +
Sbjct: 306 VHVNLIPLNPTPGSKWDAAPKARQDEFVRRVIAKGVPCTVRDTKGQEIAAACGQLAA 362


>gi|159487459|ref|XP_001701740.1| predicted Fe-S-cluster redox enzyme [Chlamydomonas reinhardtii]
 gi|158280959|gb|EDP06715.1| predicted Fe-S-cluster redox enzyme [Chlamydomonas reinhardtii]
          Length = 502

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 178/371 (47%), Gaps = 61/371 (16%)

Query: 34  RTSQIWKWIY--------VRGIRDFQGMSD-ISQEVRHLLNQHFSIIYPEIVDEKI-SCD 83
           R  QIW+W+Y        VR + +  G  +  + +    +  H S+     + + + + D
Sbjct: 118 RALQIWRWMYADPPAGSWVRSLEETMGRQNGFAAKFVEKVGPHVSLEGGLKLSQVVRASD 177

Query: 84  GTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142
           GTRK +         GG   IETV IP            VGC++ C FCYTG   L+ NL
Sbjct: 178 GTRKLVFTLLGGEAAGG--SIETVLIP-----------VVGCAMNCQFCYTGRMGLLGNL 224

Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202
           +  +I+ QV+ AR  L         EG   P     ++N+V MGMGEPL N + V  +  
Sbjct: 225 STAQIVEQVVEARRFLAQ-------EGDRTP-----LTNLVFMGMGEPLHNTEAVLAAAD 272

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP 262
           I S  +GL  S  +IT+ST G VP +  V     V +A+SLHA ++++R+ +VP+NR+Y 
Sbjct: 273 IVSHYLGLHISHNKITISTVGLVPEMRAVLARTRVQVALSLHATTDEVRDWIVPVNRRYD 332

Query: 263 LEMLIDACRH-YPGLSNA------------------------RRITFEYVMLKGINDSPR 297
           L  L  A    +P    A                        R +  EY ML GIND+  
Sbjct: 333 LATLTAALEEMFPKEEEAAIGSLSSSDEAAAAAAGKGSSKEGRSLLVEYTMLHGINDTLD 392

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
           DA  L  +L+ +  K+NLI FNP  G  +  S  +DI  F   + RSG    IR  RG D
Sbjct: 393 DAHRLADMLRRVNCKVNLIVFNPHKGTRFQPSTDEDISAFRSALIRSGMVCTIRDSRGDD 452

Query: 358 ILAACGQLKSL 368
            +AACGQL ++
Sbjct: 453 EMAACGQLGNV 463


>gi|315187026|gb|EFU20783.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6578]
          Length = 354

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 119/377 (31%), Positives = 189/377 (50%), Gaps = 39/377 (10%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   ++ SL G++ EE+ E L          R R  QI++WI+ + I  F GM+ +   +
Sbjct: 1   MRTRERLSLSGLLPEEISELL------PMEPRYRAIQIFEWIHAKRILSFSGMTTLPSRL 54

Query: 61  RHLLNQHFSI----IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE-KSRGT 115
           R  L+  + +    I+  + D     D T K  +R     I     +E V + + K R T
Sbjct: 55  REELSSSYHVRGATIHALVQDPG---DETIKAQVRLQDGQI-----VEAVVLTDGKGRKT 106

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
            C+S+Q GC++ C+FC TG     RNLT  EI+ Q L+ +   G                
Sbjct: 107 ACLSTQAGCAMGCAFCKTGQLGFSRNLTPGEIVDQWLILQDTAGP--------------- 151

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE- 234
              +S+IV MGMGEPL N  N++K++SI S   G   S RRIT+ST G VP I  + EE 
Sbjct: 152 ---LSHIVFMGMGEPLLNLANLRKAISILSHERGSRLSLRRITVSTCGIVPGILSLAEEG 208

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             V LA SL +   ++R  L+P+  ++PL+ + +A   Y   +  +RIT E V ++G+  
Sbjct: 209 PHVRLAFSLTSARPEVRKQLMPVEARHPLDHVKEALLKYQA-ATGKRITLEVVAIEGLTC 267

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           +P ++  +    +G+   +N+IP+NP PG  Y       + +F   + +   +  +R  +
Sbjct: 268 TPEESRAIAGFAEGLRVLVNVIPWNPVPGLPYRPPSPAALSSFVSSLTKKALTVTVRYRK 327

Query: 355 GLDILAACGQLKSLSKR 371
           G  I  ACGQL  ++ R
Sbjct: 328 GQHIHGACGQLGVVTPR 344


>gi|300742035|ref|ZP_07072056.1| radical SAM enzyme, Cfr family [Rothia dentocariosa M567]
 gi|311111949|ref|YP_003983171.1| cfr family radical SAM enzyme [Rothia dentocariosa ATCC 17931]
 gi|300381220|gb|EFJ77782.1| radical SAM enzyme, Cfr family [Rothia dentocariosa M567]
 gi|310943443|gb|ADP39737.1| cfr family radical SAM enzyme [Rothia dentocariosa ATCC 17931]
          Length = 409

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 180/342 (52%), Gaps = 13/342 (3%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R SQ+ K  + R + D   M+D+  + R   ++  S   P+++    + +      L+ 
Sbjct: 70  FRASQLSKHYFERLVNDPAQMTDLPAQDR---DEIVSRAMPQLLTPVRTLEADGGDTLKV 126

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
             R   G + IE+V +   +R T+C+SSQ GC + C FC TG Q L RNL+  EI+ QV+
Sbjct: 127 VHRLFDGAL-IESVIMRYDNRVTMCISSQAGCGMNCPFCATGQQGLTRNLSTAEIVEQVV 185

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210
                L    G +  +G    +   ++SNIV MGMGE L N+ +   ++   I     GL
Sbjct: 186 AGARYLKQMKGLDKADGGSEDTRPLRVSNIVFMGMGEALANYKSTMGAVHRLIDPAPEGL 245

Query: 211 SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S R +T+ST G VP I +   E++ + LA+SLHA  ++LR+ L+PIN+++ ++  +DA
Sbjct: 246 GISARGLTMSTVGLVPGIRKFELEKLPITLALSLHAPDDELRDELIPINQRWKVDETLDA 305

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL----KGIPAKINLIPFNPWPGCE 325
              Y   +  RRI+ EY +++ IND    A  L K L    +G    +N IP NP PG +
Sbjct: 306 AYDY-YRTTGRRISIEYALIRDINDQGWRADLLGKKLAQRGRGW-VHVNPIPLNPTPGSK 363

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +  S +     F E ++  G  + IR  RG DI  ACGQL +
Sbjct: 364 WTASRKGVEQNFVERLRAHGIPTTIRDTRGSDIDGACGQLAA 405


>gi|293400143|ref|ZP_06644289.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306543|gb|EFE47786.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 329

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 99/273 (36%), Positives = 148/273 (54%), Gaps = 23/273 (8%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IETV+I  +  GT+CVS+QVGCS+ C FC +G    VRNLT  EI+ QV+L R       
Sbjct: 76  IETVFIKRRDGGTVCVSTQVGCSVGCIFCESGRNGFVRNLTPSEIVQQVILIR------- 128

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         +K++ IV MGMGEPL N+DN+  ++ I  D  GL+F    IT+ST 
Sbjct: 129 --------------QKVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITISTV 174

Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G V  + ++ EE + + L ISLHA +  +RN ++P    Y +E ++     Y    N R+
Sbjct: 175 GPVNQLKKLREEHLKIQLTISLHAATQAVRNCIIPHMHMYAIEDVVKQALSYSQRHN-RK 233

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           + F Y++L GIND   D   L K  KG    IN++ +NP    +     ++++V F   +
Sbjct: 234 VVFAYLLLPGINDRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQL 293

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374
           +++G    +R   G +I AACGQL +   +  K
Sbjct: 294 EQTGLEVTMRVSHGREIKAACGQLANTYNKAKK 326


>gi|189346924|ref|YP_001943453.1| radical SAM enzyme, Cfr family [Chlorobium limicola DSM 245]
 gi|254807162|sp|B3ED49|RLMN_CHLL2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|189341071|gb|ACD90474.1| radical SAM enzyme, Cfr family [Chlorobium limicola DSM 245]
          Length = 361

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 192/374 (51%), Gaps = 35/374 (9%)

Query: 14  REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73
           + EL  A+  +G P      R +Q+ +W++    R F  ++ I+  +R  L+  +SI   
Sbjct: 13  KPELIRAITSLGEPA----YRAAQLHQWLFSHRTRSFDDITIINLALRQKLSSIYSIRTA 68

Query: 74  EIVD--EKISCDG---TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            + D  ++   D    T K+L+R     +     +E V IP ++R T C+SSQ GCSL C
Sbjct: 69  TLDDCRQEYRDDHEIPTTKFLVR-----MHDDETVEAVLIPAENRITACISSQAGCSLHC 123

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
           SFC TG     RNLT+ E+  QV L    L +               G+ I+NIV MGMG
Sbjct: 124 SFCATGKTGFRRNLTSGEMTDQVFLLNDHLAEH-------------YGQTITNIVFMGMG 170

Query: 189 EPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGVMLAISLH 244
           EPL N  +V  ++ ++++ +   S S+R+I++ST+G +P I   AR+  +  V LA+SLH
Sbjct: 171 EPLLNMTHVLDAIETLSNHNYRYSLSQRKISISTAGIIPQIDLLARLPHK--VKLAVSLH 228

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +     R  ++P  R+YPL  L  +   Y  LS  + +T  Y++L+ INDSP DA  L+K
Sbjct: 229 SAIQTNRESIMPAAREYPLPALKKSLAEYNRLS-GQPVTLVYMLLRDINDSPEDAKALVK 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             K +  KINLI +N     ++          F   +  SG    +R   G  I AACGQ
Sbjct: 288 FAKSLFCKINLIDYNAIVNIKFKPVYTGKSELFLRSLLDSGLQVTVRKSHGASINAACGQ 347

Query: 365 LKSLSK-RIPKVPR 377
           L + S+  +P+ P 
Sbjct: 348 LVTESRLHLPEEPH 361


>gi|320538490|ref|ZP_08038353.1| radical SAM enzyme, Cfr family [Treponema phagedenis F0421]
 gi|320144661|gb|EFW36414.1| radical SAM enzyme, Cfr family [Treponema phagedenis F0421]
          Length = 356

 Score =  176 bits (445), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 183/360 (50%), Gaps = 35/360 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L G++ EE+        +PQ+    +  QI++WI   G+  F  M+++S   R  L    
Sbjct: 18  LTGLLPEEIYRV---CALPQK---FQGEQIFRWI-ASGVESFAEMTNLSLSERERLANSA 70

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLT 127
            I   ++       DGT K  +      +     +ETV + +++ R T CVS QVGC ++
Sbjct: 71  VIRGSKLAVILKDPDGTIKLGID-----LYDSQRVETVLLIDRAGRKTACVSCQVGCPMS 125

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC TG     RNLTA EI+ Q L    + G                  K+ NIV MGM
Sbjct: 126 CSFCQTGQLGFTRNLTAAEIVEQFLHLEKIAG------------------KLDNIVFMGM 167

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VMLAISLHA 245
           GEP+ N   ++K++++ +   G + S RRITLSTSG    I  +G  +G  + LA+SL  
Sbjct: 168 GEPMLNLPAIRKAIAVLTHKKGRALSPRRITLSTSGICKGIYELGS-LGPDIRLAVSLTT 226

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +  LR  L+PI ++  LE L  A   +      +R+T E  +++GIN +P  A  +I+ 
Sbjct: 227 ANTALRTKLMPITKQNSLEDLKKAIAFF-NEKTKKRVTLELALMRGINTAPSFAREVIEF 285

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            KG+   INLIP+NP    +Y    +K+++ F   ++++G    +R  RG  I  ACGQL
Sbjct: 286 SKGLNVHINLIPWNPVESLDYASPTEKELIGFESLLRKAGIPVTLRHRRGKTICGACGQL 345


>gi|78779958|ref|YP_398070.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
           MIT 9312]
 gi|123768932|sp|Q318R1|RLMN_PROM9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78713457|gb|ABB50634.1| 23S rRNA m(2)A-2503 methyltransferase [Prochlorococcus marinus str.
           MIT 9312]
          Length = 348

 Score =  176 bits (445), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 186/375 (49%), Gaps = 49/375 (13%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ-EV----- 60
           ++L+G   ++LE   L  G        R  QI+ WIY    ++     +I Q EV     
Sbjct: 2   KNLLGSSIKDLENIALDYG----QAAFRGRQIYSWIYNYRNKN----KNIDQIEVLPLDF 53

Query: 61  -RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
            + L +  F +      ++K++ DGT K LL            IE V IP + R T C+S
Sbjct: 54  RKKLKDDGFKVSELSFQEKKLANDGTLKLLL-----STNDNESIECVGIPTEKRLTACLS 108

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC + C FC TG + L R+L A EIL Q+L                  +   + RK+
Sbjct: 109 SQVGCPMDCKFCATGKEGLKRSLKASEILDQILF-----------------IENEMNRKV 151

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-----ARVGEE 234
           +NIV MGMGEPL N D +   LSI S +     S+R+IT+ST   VP +     AR  + 
Sbjct: 152 TNIVFMGMGEPLLNIDEL--LLSIRSINEDFQISQRKITVSTVA-VPKMMSKLSARSFQI 208

Query: 235 IG---VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           +G     LAISLHA +   R  ++P  + Y ++ +I+  + +      RR++FEY+ML G
Sbjct: 209 LGNCQFTLAISLHASNQKTRETIIPSAKNYEIKNIIEDSKQFVK-DTGRRVSFEYLMLSG 267

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
           +ND    A  L  +L+G    +NLI +N     E+  +  K++  F   +  +G +   R
Sbjct: 268 VNDKLEHANELSNLLRGFQCHVNLIQYNQIDEVEFKRASLKNLQLFQSRLSNNGITVSFR 327

Query: 352 TPRGLDILAACGQLK 366
             RGLD  AACGQL+
Sbjct: 328 KSRGLDKNAACGQLR 342


>gi|307718490|ref|YP_003874022.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6192]
 gi|306532215|gb|ADN01749.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6192]
          Length = 354

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 184/379 (48%), Gaps = 43/379 (11%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   ++ SL G++ E++ E L          R R+ QI++WI+ + I  F GM+ +   +
Sbjct: 1   MRTRERFSLSGLLPEDISELLTA------EPRYRSLQIFEWIHAKRISSFTGMTTLPSRL 54

Query: 61  RHLLNQHFSI-------IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR 113
           R  L+  + +       +  +  DE I              R   G +    V    K R
Sbjct: 55  REELSSSYHVRGASLHALLQDPGDETIKAQ----------VRLQDGQIVEAVVLTDGKGR 104

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T C+S+Q GC++ C+FC TG     RNLT  EI+ Q L+ +   G              
Sbjct: 105 KTACLSTQAGCAMGCAFCNTGQLGFSRNLTPGEIVDQWLILQDTAGP------------- 151

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
                +S+IV MGMGEPL N  N++K++SI S   G   S RRIT+ST G VP I  + E
Sbjct: 152 -----LSHIVFMGMGEPLLNLANLRKAISILSHERGSRLSLRRITVSTCGIVPGILSLAE 206

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E   V LA SL +   ++R  L+P+  ++PL+ + +A   Y   +  +RIT E V ++G+
Sbjct: 207 EGPHVRLAFSLTSARPEVRKQLMPVEARHPLDHVKEALLRYQA-ATGKRITLEVVAIEGL 265

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
             +P ++  +    +G+   +N+IP+NP PG  Y       + +F   + +   +  +R 
Sbjct: 266 TCTPEESRAIAGFAEGLRVLVNVIPWNPVPGLPYRPPSPAALSSFVSSLTKKALTVTVRY 325

Query: 353 PRGLDILAACGQLKSLSKR 371
            +G  I  ACGQL  ++ R
Sbjct: 326 RKGQHIHGACGQLGVVTPR 344


>gi|329766407|ref|ZP_08257953.1| radical SAM protein [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137176|gb|EGG41466.1| radical SAM protein [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 351

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/369 (33%), Positives = 196/369 (53%), Gaps = 31/369 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L  ++ EE+E+ ++ +G P    R R  QI   +Y +  ++   +  +   +R  L +
Sbjct: 2   KDLYRLLPEEMEQMVIDMGQP----RYRADQILYPLYYKFPKNISEIRQLPTMMRDKLAE 57

Query: 67  HFSIIYPEI-VDEKISCDG-TRKWLLRFPARCIGGPVEIETV-YIPEK----SRGTLCVS 119
              +I     V   +S DG T K LL       G PVE   + Y P K     R T+CVS
Sbjct: 58  EGYVIGSATEVHRVVSEDGDTTKLLLNL---ADGTPVETVLIQYPPSKINGHPRSTICVS 114

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +QVGC++ C+FC TG     RN+ AEEI+ QV+    LL                 G+ +
Sbjct: 115 TQVGCAMGCTFCATGQMGFERNIKAEEIVAQVIHFAELL--------------EKRGQHV 160

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           +N+V MGMGEPL N+D   +++ + +   G    +R IT+ST G +  I ++ EE + + 
Sbjct: 161 TNLVFMGMGEPLVNYDETIRAVRLLTHPRGFGIGQRNITISTIGIISGIDKLAEEDLQIG 220

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLHA ++ LR  LVP    + ++ LI A + Y      RR+TFEY +++G+NDSP  
Sbjct: 221 LAISLHAPNDKLRQKLVPTAGPHSVDDLIAAGKRYFK-KTGRRVTFEYALIEGVNDSPEI 279

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L  +L G  + +NLIP NP  G ++    ++ ++ F   +  +G +  +R  +G +I
Sbjct: 280 AKELSLLLDGNGSHVNLIPLNPTTG-DFHRPSKRSVLEFERILNIAGVNCTVRVEKGTEI 338

Query: 359 LAACGQLKS 367
            AACGQL++
Sbjct: 339 SAACGQLRT 347


>gi|307826514|ref|ZP_07656687.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96]
 gi|307732443|gb|EFO03343.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96]
          Length = 271

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/281 (39%), Positives = 144/281 (51%), Gaps = 51/281 (18%)

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           + CSFC+TG Q L RNLT  EI+ Q L A R L  + PG E            +I NIV 
Sbjct: 1   MNCSFCFTGKQGLKRNLTTSEIVGQFLQAWRWLAKNRPGEE------------RILNIVF 48

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MG GEPL NFD VKK+  I     G S   +RIT+ST+G++P + R  +EI GV LA+SL
Sbjct: 49  MGQGEPLHNFDAVKKACEIFLSKHGTSIGVQRITISTAGYIPGLKRWSQEIPGVNLALSL 108

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYP----------------------------- 274
           H+   + RN L+PIN KYPL+ ++      P                             
Sbjct: 109 HSPFEEKRNELIPINIKYPLDEVLATIDKIPLNKKQFITYEYILIKDFNDTPDDAXXXXE 168

Query: 275 --------GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
                    L+  + IT+EY+++K  NDSP DA  L  IL G  A INLIPFN +PG  Y
Sbjct: 169 VLATIDKIPLNKKQFITYEYILIKDFNDSPDDAKKLGTILAGKSAYINLIPFNSFPGSHY 228

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
              D   I  F E +      + IR+ +G D+LAACGQL S
Sbjct: 229 KRPDLDKIEKFKEVLDTFKIPTLIRSAKGDDVLAACGQLNS 269


>gi|159463592|ref|XP_001690026.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158284014|gb|EDP09764.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 374

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 179/354 (50%), Gaps = 39/354 (11%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL-- 90
           M   ++W W+       +  + D+ +    LL+++F     ++V  + S DG+   LL  
Sbjct: 30  MHALRMWGWLIRNPSATWHDVPDMPKAAVALLDKYFVKFTTKVVKCQNSSDGSTTKLLVE 89

Query: 91  ------------RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138
                        + A  +             + R TLCVSSQVGC + C+FC TGT  L
Sbjct: 90  LQDGMQVEAVVMTYDAPSVTAAGAAAAAAARARKRSTLCVSSQVGCQMGCTFCATGTMGL 149

Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198
             +L A EI+ Q++ AR++                    +I N+V MGMGEPL N++ V+
Sbjct: 150 KGHLNAGEIVEQLVHARAVA-------------------RIRNVVFMGMGEPLNNYEAVR 190

Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPI 257
            ++++ +DS      +R +T+ST G +P I ++ E++ GV LA+SLHA + +LR  +VP 
Sbjct: 191 GAVAMMTDSKYFGLRRRHVTVSTVGVIPRIKQLAEDLPGVSLALSLHAPTQELRLQIVPS 250

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
            R Y L+ L++A R Y   ++++R+ +EYVML G+ND    A  L ++LKG    INLIP
Sbjct: 251 ARAYKLDKLMEAVRSYQA-NSSQRVFYEYVMLSGVNDGEEQAHQLGQLLKGDDVVINLIP 309

Query: 318 FNPW---PGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAACGQLKS 367
           +NP     G  +       + TF   ++   G  + IR   G DI  A G  K+
Sbjct: 310 WNPIYQPEGPFFEAPRDGSVGTFQSILRHQYGLHTTIRQEMGQDISGAWGWGKA 363


>gi|160938516|ref|ZP_02085871.1| hypothetical protein CLOBOL_03414 [Clostridium bolteae ATCC
           BAA-613]
 gi|167760863|ref|ZP_02432990.1| hypothetical protein CLOSCI_03251 [Clostridium scindens ATCC 35704]
 gi|225375530|ref|ZP_03752751.1| hypothetical protein ROSEINA2194_01155 [Roseburia inulinivorans DSM
           16841]
 gi|239623023|ref|ZP_04666054.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|240147536|ref|ZP_04746137.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
 gi|158438889|gb|EDP16646.1| hypothetical protein CLOBOL_03414 [Clostridium bolteae ATCC
           BAA-613]
 gi|167661466|gb|EDS05596.1| hypothetical protein CLOSCI_03251 [Clostridium scindens ATCC 35704]
 gi|225212619|gb|EEG94973.1| hypothetical protein ROSEINA2194_01155 [Roseburia inulinivorans DSM
           16841]
 gi|239522602|gb|EEQ62468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
 gi|257200248|gb|EEU98532.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
          Length = 329

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/273 (36%), Positives = 147/273 (53%), Gaps = 23/273 (8%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IETV+I  +  GT+CVS+QVGCS+ C FC +G    VRNLT  EI+ QV+L R       
Sbjct: 76  IETVFIKRRDGGTVCVSTQVGCSVGCIFCESGRNGFVRNLTPSEIVQQVILIR------- 128

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         +K++ IV MGMGEPL N+DN+  ++ I  D  GL+F    IT+ST 
Sbjct: 129 --------------QKVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTV 174

Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G V  + ++ EE + + L ISLHA +   RN ++P    Y +E ++     Y    N R+
Sbjct: 175 GPVNQLKKLREEHLKIQLTISLHAATQAARNCIIPHMHMYAIEDVVKQALSYSQRHN-RK 233

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           + F Y++L GIND   D   L K  KG    IN++ +NP    +     ++++V F   +
Sbjct: 234 VVFAYLLLPGINDRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQL 293

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374
           +++G    +R   G +I AACGQL +   +  K
Sbjct: 294 EQTGLEVTMRVSHGREIKAACGQLANTYNKAKK 326


>gi|317501363|ref|ZP_07959565.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA]
 gi|325263263|ref|ZP_08129998.1| radical SAM enzyme, Cfr family [Clostridium sp. D5]
 gi|328948778|ref|YP_004366115.1| radical SAM protein [Treponema succinifaciens DSM 2489]
 gi|316897227|gb|EFV19296.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA]
 gi|324031656|gb|EGB92936.1| radical SAM enzyme, Cfr family [Clostridium sp. D5]
 gi|328449102|gb|AEB14818.1| radical SAM enzyme, Cfr family [Treponema succinifaciens DSM 2489]
          Length = 329

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/273 (36%), Positives = 147/273 (53%), Gaps = 23/273 (8%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IETV+I  +  GT+CVS+QVGCS+ C FC +G    VRNLT  EI+ QV+L R       
Sbjct: 76  IETVFIKRRDGGTVCVSTQVGCSVGCIFCESGRNGFVRNLTPSEIVQQVILIR------- 128

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         +K++ IV MGMGEPL N+DN+  ++ I  D  GL+F    IT+ST 
Sbjct: 129 --------------QKVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTV 174

Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G V  + ++ EE + + L ISLHA +   RN ++P    Y +E ++     Y    N R+
Sbjct: 175 GPVNQLKKLREEHLKIQLTISLHAATQAARNCIIPHMHMYAIEDVVKQALSYSQRHN-RK 233

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           + F Y++L GIND   D   L K  KG    IN++ +NP    +     ++++V F   +
Sbjct: 234 VVFAYLLLPGINDRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQL 293

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374
           +++G    +R   G +I AACGQL +   +  K
Sbjct: 294 EQTGLEVTMRVSHGREIKAACGQLANTYNKAKK 326


>gi|163816252|ref|ZP_02207619.1| hypothetical protein COPEUT_02440 [Coprococcus eutactus ATCC 27759]
 gi|166032398|ref|ZP_02235227.1| hypothetical protein DORFOR_02101 [Dorea formicigenerans ATCC
           27755]
 gi|167747584|ref|ZP_02419711.1| hypothetical protein ANACAC_02305 [Anaerostipes caccae DSM 14662]
 gi|167771778|ref|ZP_02443831.1| hypothetical protein ANACOL_03150 [Anaerotruncus colihominis DSM
           17241]
 gi|210615433|ref|ZP_03290560.1| hypothetical protein CLONEX_02776 [Clostridium nexile DSM 1787]
 gi|227498634|ref|ZP_03928778.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|283796286|ref|ZP_06345439.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1]
 gi|331088114|ref|ZP_08337035.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 3_1_46FAA]
 gi|158448447|gb|EDP25442.1| hypothetical protein COPEUT_02440 [Coprococcus eutactus ATCC 27759]
 gi|166028121|gb|EDR46878.1| hypothetical protein DORFOR_02101 [Dorea formicigenerans ATCC
           27755]
 gi|167652946|gb|EDR97075.1| hypothetical protein ANACAC_02305 [Anaerostipes caccae DSM 14662]
 gi|167666418|gb|EDS10548.1| hypothetical protein ANACOL_03150 [Anaerotruncus colihominis DSM
           17241]
 gi|210150282|gb|EEA81291.1| hypothetical protein CLONEX_02776 [Clostridium nexile DSM 1787]
 gi|226904090|gb|EEH90008.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|291076221|gb|EFE13585.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1]
 gi|291543137|emb|CBL16247.1| radical SAM enzyme, Cfr family [Ruminococcus bromii L2-63]
 gi|330409070|gb|EGG88529.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 329

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/273 (36%), Positives = 147/273 (53%), Gaps = 23/273 (8%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IETV+I  +  GT+CVS+QVGCS+ C FC +G    VRNLT  EI+ QV+L R       
Sbjct: 76  IETVFIKRRDGGTVCVSTQVGCSVGCIFCESGRNGFVRNLTPSEIVQQVVLIR------- 128

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         +K++ IV MGMGEPL N+DN+  ++ I  D  GL+F    IT+ST 
Sbjct: 129 --------------QKVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTV 174

Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G V  + ++ EE + + L ISLHA +   RN ++P    Y +E ++     Y    N R+
Sbjct: 175 GPVNQLKKLREEHLKIQLTISLHAATQAARNCIIPHMHMYAIEDVVKQALSYSQRHN-RK 233

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           + F Y++L GIND   D   L K  KG    IN++ +NP    +     ++++V F   +
Sbjct: 234 VVFAYLLLPGINDRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQL 293

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374
           +++G    +R   G +I AACGQL +   +  K
Sbjct: 294 EQTGLEVTMRVSHGREIKAACGQLANTYNKAKK 326


>gi|269795650|ref|YP_003315105.1| radical SAM enzyme, Cfr family [Sanguibacter keddieii DSM 10542]
 gi|269097835|gb|ACZ22271.1| radical SAM enzyme, Cfr family [Sanguibacter keddieii DSM 10542]
          Length = 364

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 180/347 (51%), Gaps = 32/347 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE--KISCDG--TRKW 88
            R  Q+    +     D Q M+D+    R +L      ++P ++ +   +  DG  T K 
Sbjct: 34  FRAKQLATHYFSHLTADPQDMTDLPAGSRDVLTD---ALFPPLLTKVRTMEADGGTTVKT 90

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L     +     V++E+V +   SR TLCVSSQ GC + C FC TG   L RNL+  EI+
Sbjct: 91  LWHLYDQ-----VKVESVLMRYTSRTTLCVSSQAGCGMACPFCATGQLGLTRNLSTAEIV 145

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD----NVKKSLSIA 204
            QV  A   L D           IP    +++N+V MGMGEPL N+      V+++++ A
Sbjct: 146 EQVRQAAKSLADGE---------IPGGPTRLNNLVFMGMGEPLANYKAVIGTVRQAVAPA 196

Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPL 263
            D  GL  S R IT+ST G VP + ++ +E I V LA+SLHA  ++LR+ LVPIN ++ +
Sbjct: 197 PD--GLGMSARNITVSTVGLVPAMNKLAKEGIPVTLALSLHAPDDELRSDLVPINTRWSV 254

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNP 320
           + ++DA R Y   +  RR++ EY ++K +ND    A  L + L         +N IP NP
Sbjct: 255 DEVLDAARGYFD-ATGRRVSIEYALIKDMNDHAWRADLLGEKLTARGQGWVHVNPIPLNP 313

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            PG  +  S+Q     F   ++  G  + IR  RG DI  ACGQL +
Sbjct: 314 TPGSIWTASEQDVEDEFVARLRGHGIPTTIRDTRGSDIDGACGQLAA 360


>gi|134102464|ref|YP_001108125.1| ribosomal RNA large subunit methyltransferase N [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291004145|ref|ZP_06562118.1| ribosomal RNA large subunit methyltransferase N [Saccharopolyspora
           erythraea NRRL 2338]
 gi|205829872|sp|A4FMC5|RLMN_SACEN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|133915087|emb|CAM05200.1| predicted Fe-S-cluster redox enzyme [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 369

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 178/343 (51%), Gaps = 24/343 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLL 90
            R  Q+    + R   D + M+DI    R  L      +++ P + +       TRK L 
Sbjct: 41  FRARQLAHHYFGRLNADVESMTDIPAGSRAKLGADLLPTLLTP-VRNLDTDEGTTRKTLW 99

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
           R     +     +E+V +    R T+C+SSQ GC + C FC TG   L RNL+  EI+ Q
Sbjct: 100 RAHDGTL-----LESVLMRYPDRATVCISSQAGCGMACPFCATGQGGLQRNLSTAEIVDQ 154

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM-- 208
           V  A +++ D        G V    GR +SN+V MGMGEPL N+  V  ++    D    
Sbjct: 155 VRSAAAMMRD--------GEVPGGPGR-LSNVVFMGMGEPLANYKRVINAVHRICDPAPE 205

Query: 209 GLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           GL  S+R +T+ST G VP I R+  E++ V LA+SLH   ++LR+ LVP+N ++ +E ++
Sbjct: 206 GLGLSQRSVTVSTVGLVPAIRRMTAEDLHVTLAVSLHTPDDELRDTLVPVNNRWKVEEVL 265

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNPWPGC 324
            A R Y      RR++ EY +++ IND P  A  L K+L     +   +NLIP NP PG 
Sbjct: 266 QAARGYAD-HTGRRVSIEYALIRDINDQPWRADLLGKLLHKHLGQFVHVNLIPLNPTPGS 324

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           ++  S +     F   ++ +G    +R  RG +I AACGQL +
Sbjct: 325 KWDASPKPVEREFVRRVREAGVPCTVRDTRGQEIAAACGQLAA 367


>gi|123969217|ref|YP_001010075.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
           AS9601]
 gi|205829808|sp|A2BT57|RLMN_PROMS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123199327|gb|ABM70968.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
           AS9601]
          Length = 348

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/374 (32%), Positives = 182/374 (48%), Gaps = 39/374 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV--RGIRDFQGMSDISQEVRHLL 64
           ++L+G    +LE   L  G        R  QI+ WIY      ++   +  +  + R  L
Sbjct: 2   KNLLGSSINDLENVALDYG----QAAFRGRQIYNWIYNYRNKNKNIDQIEVLPLDFREKL 57

Query: 65  N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
               F +    I +  ++ DGT K LL            IE V IP + R T C+SSQVG
Sbjct: 58  KVDGFKVSELVIKERNLANDGTLKLLLSTE-----DNESIECVGIPTEKRLTACLSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG + L R+L A EIL Q+L                  +   + RK++NIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILF-----------------IEYEMNRKVTNIV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236
            MGMGEPL N D +   LSI S +     S+R+IT+ST      I+++  +         
Sbjct: 156 FMGMGEPLLNIDEL--LLSIRSINNDFQISQRKITVSTVAIPKMISKLSAKSFQILSNCQ 213

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LAISLHA +   R  ++P  + Y ++ +I+ C+ +      RR++FEY+ML G+ND  
Sbjct: 214 FTLAISLHASNQKTRETIIPSAKNYEIKNIIEDCKTFVR-ETGRRVSFEYLMLSGVNDKL 272

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L  +LKG    +NLI +N     E+  +  K++  F   +  +G +  +R  RGL
Sbjct: 273 EHACELSNLLKGFQCHVNLIQYNQIDEVEFQRTSLKNLQLFQSRLVNNGIAVSLRKSRGL 332

Query: 357 DILAACGQLKSLSK 370
           D  AACGQL+  +K
Sbjct: 333 DKNAACGQLRQNAK 346


>gi|323358368|ref|YP_004224764.1| Fe-S-cluster redox enzyme [Microbacterium testaceum StLB037]
 gi|323274739|dbj|BAJ74884.1| predicted Fe-S-cluster redox enzyme [Microbacterium testaceum
           StLB037]
          Length = 442

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 183/364 (50%), Gaps = 16/364 (4%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  M   E  E + ++G+P      R  Q+ K  +     D   M+D+    R  L    
Sbjct: 72  LADMTAAERVEKVKELGLPG----FRAKQLEKHYFTHYTSDPAEMTDLPASGREEL---V 124

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           + + P ++ E    +  R   ++F  +   G + +E+V +    R TLCVSSQ GC + C
Sbjct: 125 AGMLPPLLTEVRRLETDRGDTIKFLWKLHDGAL-VESVLMRYPGRITLCVSSQAGCGMNC 183

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            FC TG   L RN++A EI+ Q++ A +L+  G   G    +      V  ++SNIV MG
Sbjct: 184 PFCATGQAGLTRNMSAAEIIEQIVRANALIAAGGLGGKTLRQAQGPGQVPERVSNIVFMG 243

Query: 187 MGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
           MGEPL N+  V +++ +  D   GL  S R IT+ST G VP I ++  E+I V  A+SLH
Sbjct: 244 MGEPLANYARVMQAVRVMVDKDHGLGMSARGITVSTVGLVPAIKKLADEDIPVTFALSLH 303

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  + LR+ L+P+N ++ ++  +DA R Y      RR++ EY ++K +ND    A  L  
Sbjct: 304 APDDGLRDELIPVNSRWKVDEALDAARAYFD-KTGRRVSIEYALIKDMNDHAWRADLLAD 362

Query: 305 ILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
            L         +N IP NP PG  +  S+      F   +  +G  + +R  RG +I  A
Sbjct: 363 KLNARGRGWVHVNPIPLNPTPGSIWTASEVPVQNEFVRRLNDAGIPTTLRDTRGKEIDGA 422

Query: 362 CGQL 365
           CGQL
Sbjct: 423 CGQL 426


>gi|306820530|ref|ZP_07454163.1| cfr family radical SAM enzyme [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551444|gb|EFM39402.1| cfr family radical SAM enzyme [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 360

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/380 (30%), Positives = 199/380 (52%), Gaps = 41/380 (10%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +++++    +E +  L++ G      + R  QI+  +Y +GI+ F  +++I + ++  + 
Sbjct: 17  EKNILDYQFDEFQNILIENGFE----KYRAKQIYPLVY-KGIKTFDEINNIPKNLKDFML 71

Query: 66  QHFSI----IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           ++F +    IY ++  +K   D T+K+L++     I     IE V +  K   + C+SSQ
Sbjct: 72  ENFVVNSVSIYEKLQSKK---DYTKKYLMKLEDGNI-----IECVLMKYKFGLSACISSQ 123

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C+FC +     VR+L++ E++ Q+L   +                  VG KISN
Sbjct: 124 VGCLMGCTFCASTVGSKVRDLSSGEMIGQILAMSN-----------------DVGEKISN 166

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240
           IV+MG GEP  N+ N+ K   +      L+   R IT+ST G    I    + ++ + LA
Sbjct: 167 IVIMGSGEPFDNYGNLLKFFDLVMSKDTLNIGARHITVSTCGLADKIIDFADRKLQINLA 226

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLH  + + R+ ++PI+RK+ ++ L+ A  +Y   +N RR+T+EY ++  +NDS  DA 
Sbjct: 227 ISLHNPNQEKRSQIMPISRKFKIDELMRAVEYYISKTN-RRVTYEYALINEVNDSEEDAK 285

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L++++K     INLIP N      Y   D   I  F   + ++G ++ IR   G DI  
Sbjct: 286 LLVQLVKNQLCHINLIPVNSTEHSNYKKPDNIRIQKFMNILSKNGINATIRREMGTDING 345

Query: 361 ACGQLKSLSKRIPKVPRQEM 380
           ACGQL     RI  + ++++
Sbjct: 346 ACGQL-----RISAISKEKL 360


>gi|25028463|ref|NP_738517.1| hypothetical protein CE1907 [Corynebacterium efficiens YS-314]
 gi|81749328|sp|Q8FP78|RLMN_COREF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|23493748|dbj|BAC18717.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 369

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 182/360 (50%), Gaps = 31/360 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSIIYP 73
           E+  EAL ++G+P    + R +QI +  Y R   D   M+D+ +  R  +    F  +  
Sbjct: 27  EQRIEALSELGLP----KFRLNQIARHYYGRLEADPMTMTDLPEAARAKVKDALFPTLME 82

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
            I   +   + T+K L +     +     +E+V +    R TLC+SSQ GC + C FC T
Sbjct: 83  PIRVVEADDENTQKTLWKLHDGTL-----LESVLMRYPDRATLCISSQAGCGMACPFCAT 137

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   L RNL+  EI+ QV  A                 + + G ++SNIV MGMGEPL N
Sbjct: 138 GQGGLDRNLSVGEIVDQVRNA--------------AATMQAEGGRLSNIVFMGMGEPLAN 183

Query: 194 FDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDL 250
           +  V  ++         G   S+R +T+ST G  P I ++  E++ V LA+SLH   ++L
Sbjct: 184 YKRVVSAVRQITQPSPEGFGISQRSVTVSTVGLAPAIRKLADEDMSVTLAVSLHTPDDEL 243

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--- 307
           R+ LVP+N ++ +  ++DA R+Y   S  RR++ EY +++ +ND    A  L + L    
Sbjct: 244 RDELVPVNNRWSVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQGWRADMLGQKLHKAL 302

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G    +NLIP NP PG ++  S ++    F   +   G    +R  +G +I AACGQL +
Sbjct: 303 GSRVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVPCTVRDTKGQEIAAACGQLAA 362


>gi|309800813|ref|ZP_07694945.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium dentium
           JCVIHMP022]
 gi|308222349|gb|EFO78629.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium dentium
           JCVIHMP022]
          Length = 407

 Score =  172 bits (436), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 123/358 (34%), Positives = 188/358 (52%), Gaps = 33/358 (9%)

Query: 23  KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE---K 79
           ++G+P    R R  Q+    Y     D +  SD     R    + F   +P ++ E   +
Sbjct: 57  ELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAEAAEAF---FPTLITEVTRQ 109

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
           ++ +GT    ++   R   G + IE+V +   +R TLC+SSQVGC + C FC TG   L 
Sbjct: 110 VADEGT---TIKTLWRLFDGSL-IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLT 165

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RN++A EI+ QV +A   + D        G V    GR +SNIV MGMGEP+ N+ +V  
Sbjct: 166 RNMSAGEIVEQVRVAAKAMRD--------GEVAGGPGR-LSNIVFMGMGEPMGNYRSVLS 216

Query: 200 SLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVP 256
           ++    A    G   S R IT+ST G VP I ++  E I V LA+SLHA S++LR+ LVP
Sbjct: 217 AVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVP 276

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKI 313
           +N+++ +  ++DA   Y  L++ RR++ EY +++GIND    A  L K L       A +
Sbjct: 277 MNKRFDITQVLDAAHDY-YLASKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHV 335

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG---LDILAACGQLKSL 368
           N IP NP  G ++  S  +D   F + + + G+    R PR      + AACG+  ++
Sbjct: 336 NPIPLNPIEGSKWTASKPEDERRFLDILHQGGHRHLARHPRAGYRWCLRAACGKRTAI 393


>gi|259507523|ref|ZP_05750423.1| Cfr family radical SAM enzyme [Corynebacterium efficiens YS-314]
 gi|259164908|gb|EEW49462.1| Cfr family radical SAM enzyme [Corynebacterium efficiens YS-314]
          Length = 354

 Score =  172 bits (436), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 183/360 (50%), Gaps = 31/360 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLNQHFSIIYP 73
           E+  EAL ++G+P    + R +QI +  Y R   D   M+D+ +  R  + +  F  +  
Sbjct: 12  EQRIEALSELGLP----KFRLNQIARHYYGRLEADPMTMTDLPEAARAKVKDALFPTLME 67

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
            I   +   + T+K L +     +     +E+V +    R TLC+SSQ GC + C FC T
Sbjct: 68  PIRVVEADDENTQKTLWKLHDGTL-----LESVLMRYPDRATLCISSQAGCGMACPFCAT 122

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   L RNL+  EI+ QV  A                 + + G ++SNIV MGMGEPL N
Sbjct: 123 GQGGLDRNLSVGEIVDQVRNA--------------AATMQAEGGRLSNIVFMGMGEPLAN 168

Query: 194 FDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDL 250
           +  V  ++         G   S+R +T+ST G  P I ++  E++ V LA+SLH   ++L
Sbjct: 169 YKRVVSAVRQITQPSPEGFGISQRSVTVSTVGLAPAIRKLADEDMSVTLAVSLHTPDDEL 228

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--- 307
           R+ LVP+N ++ +  ++DA R+Y   S  RR++ EY +++ +ND    A  L + L    
Sbjct: 229 RDELVPVNNRWSVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQGWRADMLGQKLHKAL 287

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G    +NLIP NP PG ++  S ++    F   +   G    +R  +G +I AACGQL +
Sbjct: 288 GSRVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVPCTVRDTKGQEIAAACGQLAA 347


>gi|212694595|ref|ZP_03302723.1| hypothetical protein BACDOR_04123 [Bacteroides dorei DSM 17855]
 gi|212663096|gb|EEB23670.1| hypothetical protein BACDOR_04123 [Bacteroides dorei DSM 17855]
          Length = 273

 Score =  172 bits (436), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 150/289 (51%), Gaps = 29/289 (10%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G   +E+++ +  +G+P    +    QI  W+Y + +     M+++S + R  L 
Sbjct: 5   KTALLGRTLDEIQQIVRNLGMP----KFAAKQITSWLYDKKVETIDEMTNLSLKHRETLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + + +     V+E  S DGT K+L R PA        IE VYIP++ R TLCVSSQVGC 
Sbjct: 61  EGYEVGASAPVEEMRSVDGTVKYLFRTPAHNF-----IEAVYIPDEDRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NL+A +IL Q+                    IP    K++N+V M
Sbjct: 116 MNCKFCMTGKQGFTANLSAHQILNQIY------------------SIPE-REKLTNLVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP  N D V K L I +   G  +S +RIT+S+ G    + R   E    LAIS+H 
Sbjct: 157 GMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMHT 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
                R  L+P  + + +  +ID   +Y   S  RR++FEY++ KG+N+
Sbjct: 217 PIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNE 264


>gi|317125387|ref|YP_004099499.1| 23S rRNA m(2)A-2503 methyltransferase [Intrasporangium calvum DSM
           43043]
 gi|315589475|gb|ADU48772.1| 23S rRNA m(2)A-2503 methyltransferase [Intrasporangium calvum DSM
           43043]
          Length = 393

 Score =  172 bits (436), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 178/350 (50%), Gaps = 21/350 (6%)

Query: 30  HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLNQHFSIIYPEIVDEKISCDGTRKW 88
           H   R  Q+    + R + D + M+D+ + VR  L+      +   IV  +     T K+
Sbjct: 54  HQGFRARQLSTHYFERLVDDPEQMTDLPKAVRADLVRDLLPPLLAPIVRRQADDGQTMKY 113

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
             R     I     +E+V +   +R T+C+SSQ GC + C FC TG   L RN++  EI+
Sbjct: 114 AWRLHDGAI-----VESVLMRYPNRVTICISSQAGCGMNCPFCATGQAGLTRNMSTAEIV 168

Query: 149 LQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
            QV+ A   L  G+  G +D +         ++SN+V MGMGE L N+     ++   +D
Sbjct: 169 EQVVWAARALRTGELAGGQDGDR----EHPLRVSNVVFMGMGEALANYGAAIGAIRRLTD 224

Query: 207 SM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPL 263
               GL  S R IT+ST G VP I ++  E I V LA+SLHA  ++LR+ LVPIN ++ +
Sbjct: 225 PAPDGLGISARGITMSTVGLVPAIDKLAAEGIPVTLALSLHAPDDELRDELVPINTRWKV 284

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL----KGIPAKINLIPFN 319
           +  IDA   Y   +  RR++ EY +++ IND    A  L + L    +G    +N IP N
Sbjct: 285 DEAIDAAHRY-YETTGRRVSIEYALIRDINDQGWRADLLAQKLNRRGRGW-VHVNPIPLN 342

Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           P PG ++  S       F E ++  G  + IR  RG DI  ACGQL + +
Sbjct: 343 PTPGSKWTASRPGVEQNFVERLRAHGIPTTIRDTRGQDIDGACGQLAAAT 392


>gi|269219614|ref|ZP_06163468.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210856|gb|EEZ77196.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 404

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 183/373 (49%), Gaps = 37/373 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E L  +   E ++ + K G P      R  Q+ +  +     D + M+D+    R  L  
Sbjct: 24  EHLADLDVAERKDRVAKAGFPA----FRADQLSRHYFEHFDVDPERMTDLPARGREEL-- 77

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             S   P ++ +       R   ++   R   G + +ETV +    R TLC+SSQ GC +
Sbjct: 78  -VSTFLPPLLTKVRDLTADRGLTIKSLWRMFDGAM-VETVLMKYPDRATLCISSQAGCGM 135

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQV-----LLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            C FC TG   L RNL+A EI+ QV       AR  LG+   C             +++N
Sbjct: 136 ACPFCATGQGGLTRNLSAGEIVEQVRCGMLAAARGDLGE--PC-------------RLTN 180

Query: 182 IVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           +V MGMGEPL N+  V K+L   I     G   S R +T+ST G  P I ++ E+ + V 
Sbjct: 181 VVFMGMGEPLANWKQVLKALRRIIEPSPAGFGLSARNVTVSTVGMAPLIEKLAEQGMPVT 240

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLHA  ++LR+ L+PIN ++ +  L+DA R Y      RR++ EY +++ +ND    
Sbjct: 241 LAISLHAPDDELRDPLIPINSRFNVGRLLDAARSY-FAKTGRRVSVEYALIRDMNDHKWR 299

Query: 299 ALNLIKIL----KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           A  L   L    +G  A +N IP NP PG  +  S  +   TF + +  +G  + IR  R
Sbjct: 300 AQLLADELNRRGRGW-AHVNPIPLNPTPGSIWTASTPEAQNTFVQTLLDAGIPTTIRDTR 358

Query: 355 GLDILAACGQLKS 367
           G DI  ACGQL +
Sbjct: 359 GSDIDGACGQLAA 371


>gi|325971942|ref|YP_004248133.1| radical SAM enzyme, Cfr family [Spirochaeta sp. Buddy]
 gi|324027180|gb|ADY13939.1| radical SAM enzyme, Cfr family [Spirochaeta sp. Buddy]
          Length = 361

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 167/330 (50%), Gaps = 23/330 (6%)

Query: 37  QIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARC 96
           QI+ W+ V+G+  F+ M+D+ +  R  L    S      +    +CD       +   R 
Sbjct: 33  QIFNWL-VKGVYSFEAMTDLPKAERERLASLMSSACSSTIH---TCDTDETGATKMGVRL 88

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
             G V    + + +K R T C+SSQVGC+  C+FC TGT  L+RNL+AEEI+ Q +    
Sbjct: 89  HDGKVIECVLLVDKKGRHTACLSSQVGCAQGCTFCKTGTMGLLRNLSAEEIIEQYI---- 144

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
                         ++    + I++IV MGMGEPL N   V +S+    +    + S RR
Sbjct: 145 -------------HLLSVSKQPITHIVYMGMGEPLANIAAVTRSIRYFHNPKTFNLSLRR 191

Query: 217 ITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
           IT+ST G VP I ++ E+ + V LA+SL +  N LR+ ++P+N+ + +  L  A  HY  
Sbjct: 192 ITVSTCGIVPGILKLAEQKLPVKLAVSLVSADNRLRDRIMPVNKAWDIMALKKALLHYQR 251

Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIV 335
           L   +R T EY +L   N     A  L   +K +   +NLIP+NP  G  Y    +++I 
Sbjct: 252 LG-GKRFTIEYCLLGNTNTDETSAKKLASYVKDLDVIVNLIPWNPAEGLPYKTPTEEEID 310

Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            F+  + R   +   R  RG +I  ACGQL
Sbjct: 311 YFALQLDRLHVNYTRRRSRGREINGACGQL 340


>gi|312898699|ref|ZP_07758089.1| radical SAM enzyme, Cfr family [Megasphaera micronuciformis F0359]
 gi|310620618|gb|EFQ04188.1| radical SAM enzyme, Cfr family [Megasphaera micronuciformis F0359]
          Length = 341

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 183/361 (50%), Gaps = 29/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            +  + + +L++ L++ GI     + R  QI+ +IY   I  +  M  + ++ R +L   
Sbjct: 3   DIFSITKGQLQDILVEAGIK----KFRADQIFHYIYKENIWSWNEMVLLPKKDREILKGL 58

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I  PE+ D ++S D  T K LLR     +     +ETV +      ++C+SSQVGC++
Sbjct: 59  LPIYIPEVADRQVSEDKETVKLLLR-----LQDGQTVETVLMKHDYGNSVCLSSQVGCAV 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +     VRNLT  E+  Q++  R                   V  ++ ++V+MG
Sbjct: 114 NCAFCASAKNGFVRNLTIGEMTAQLMAFRKY-----------------VTSELHSVVLMG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N+DNV   + +  +   L    R ITLSTSG VP + R+ EE I + LA+SLHA
Sbjct: 157 TGEPLLNYDNVLAFIRLIHEKDTLYLGYRNITLSTSGIVPAVYRLAEEGIPLNLAVSLHA 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +R  ++PI  ++  + ++ A + Y      R++TFEY+++K +N S   A  L ++
Sbjct: 217 PNDRIRKKIMPIAERFDFDSVVQAAQTYFE-KTGRKVTFEYILIKDVNISDACASQLAQL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                  +NLIP N             +   F   +KR G ++ +R   G +I AACGQL
Sbjct: 276 FSHKNVLLNLIPINDNYDVGLYRPSATESERFLTYLKRKGVNATLRREMGSNIQAACGQL 335

Query: 366 K 366
           +
Sbjct: 336 R 336


>gi|84498390|ref|ZP_00997187.1| hypothetical protein JNB_19923 [Janibacter sp. HTCC2649]
 gi|84381890|gb|EAP97773.1| hypothetical protein JNB_19923 [Janibacter sp. HTCC2649]
          Length = 392

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 181/365 (49%), Gaps = 34/365 (9%)

Query: 30  HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWL 89
           H   R  Q+    + R +   + M+D+ + VR  L    + + P ++    + +  R   
Sbjct: 36  HKGFRAKQLSTHYFERLVESPEDMTDLPKAVRDDL---VADLLPTLLTPVRTLEADRGAT 92

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
           L+   R   G + +E+V +    R T+C+SSQ GC + C FC TG   L RN++A EI+ 
Sbjct: 93  LKSVWRLHDGAL-VESVLMRYPKRVTICISSQAGCGMNCPFCATGQAGLTRNMSAAEIVE 151

Query: 150 QVL------------------LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
           QV+                   A + LGD    ED    V P    ++SN+V MGMGE L
Sbjct: 152 QVVDANRKLRHGALPAIGATHPAEAGLGDEAEDEDAATKVGPE---RVSNVVFMGMGEAL 208

Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
            N+     ++   +D    GL  S R IT+ST G VP I ++  E I V LA+SLHA  +
Sbjct: 209 ANYKAAIGAIRRLTDPTPDGLGMSARGITMSTVGLVPAIDKLAAEGIPVTLALSLHAPDD 268

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-- 306
           +LR+ LVPIN ++ ++  IDA   Y   +  RR++ EY ++K IND    A  L K L  
Sbjct: 269 ELRDELVPINTRWKVDEAIDAAYRY-FEATGRRVSIEYALIKDINDQAWRADLLGKKLTA 327

Query: 307 --KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             KG    +N IP NP PG ++  S       F E ++  G  + +R  RG DI  ACGQ
Sbjct: 328 RGKGW-VHVNPIPLNPTPGSKWTASRPGVEQQFVERLRAYGIPTTVRDTRGSDIDGACGQ 386

Query: 365 LKSLS 369
           L + +
Sbjct: 387 LAAAT 391


>gi|325192828|emb|CCA27229.1| hypothetical protein SELMODRAFT_122498 [Albugo laibachii Nc14]
          Length = 424

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 175/337 (51%), Gaps = 31/337 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
           +    IW+         F  + ++   ++  L ++F++    + +++IS DGT K L  F
Sbjct: 31  IHAQAIWREFSHNINHSFHEIPNLPLRLQQSLRENFTVCTLSLSEKQISKDGTIKLL--F 88

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
             +   G   +E+V +  K R  LCVSSQVGC + C+FC TGT  ++ +L + EIL Q+ 
Sbjct: 89  KTQDGHG---VESVIMKHKGRNMLCVSSQVGCQMGCTFCATGTMGIIADLCSGEILEQLA 145

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A +                     +I N+V MGMGEPL N+D V  ++   +   GL+ 
Sbjct: 146 FANTFA-------------------RIRNVVFMGMGEPLQNYDEVIAAIKAMTSVFGLA- 185

Query: 213 SKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             + +TLST G +  I ++  ++  V LA+SLHA + +LR+ +VP ++ +PLE L+ A  
Sbjct: 186 -PKHVTLSTVGVIHRIQQLNRDVPLVRLALSLHAPTQELRSQIVPSSKAFPLEKLMQAID 244

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSD 330
            +      R +  EY MLKGINDS   A  L K+L+     INLIP+N      ++    
Sbjct: 245 DHLASREHRVVLIEYCMLKGINDSIETAHLLGKLLQDRSVHINLIPYNTTDVDAQFSSPS 304

Query: 331 QKDIVTFSECIKRSGYS--SPIRTPRGLDILAACGQL 365
            +DI  F + I R  Y+  + +R   G+DI  ACGQL
Sbjct: 305 DQDIRNF-QSILRQDYNLKATVRENHGMDIEGACGQL 340


>gi|301059158|ref|ZP_07200099.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
 gi|300446738|gb|EFK10562.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
          Length = 345

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/311 (34%), Positives = 164/311 (52%), Gaps = 26/311 (8%)

Query: 57  SQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL 116
           SQ +R  L Q +    P  V ++I  DG    L++F    + G   +E+V +P ++  T+
Sbjct: 51  SQGLRDRLRQDWCF-EPGRVKDEIHEDG----LIKFVTELVDGH-RVESVILPLRTHQTV 104

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           C+SSQVGC + C FC TG   L R+L+ EE++ QV  AR                    G
Sbjct: 105 CISSQVGCRMGCRFCETGKLGLARSLSVEEMVGQVYQARH-----------------EFG 147

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG--EE 234
           R I N+V MGMGEP  NF+NV +++ + SD  GL  ++RRITLST+G +  I ++     
Sbjct: 148 RSIRNVVFMGMGEPFDNFENVIQAVRVMSDQRGLDIAQRRITLSTAGRIDGIRKLAALNM 207

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             + L +SL+A ++ LR  L+P++ K  L +L      YP L   + +   YV++  +ND
Sbjct: 208 PSLNLTVSLNAPNDQLRQRLMPLHDKGSLALLQKTLMAYP-LKKGKVLNVAYVLISHVND 266

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
                  L + LK + A++NLIP+N      +    Q D   F E +   G +   R PR
Sbjct: 267 QGEHVQQLAEWLKPLRARVNLIPYNSIKDSLFQPPRQGDTDLFREKLIELGVNVQKRIPR 326

Query: 355 GLDILAACGQL 365
           G +++AACGQL
Sbjct: 327 GRELMAACGQL 337


>gi|308178831|ref|YP_003918237.1| radical SAM enzyme [Arthrobacter arilaitensis Re117]
 gi|307746294|emb|CBT77266.1| radical SAM enzyme [Arthrobacter arilaitensis Re117]
          Length = 377

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 182/358 (50%), Gaps = 21/358 (5%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           E +  L ++G+P      R  Q+    +     D + MSD+ +E R  L +    ++P++
Sbjct: 31  ERQAKLKELGLPA----FRAKQLSVHYFQHYTTDPEKMSDLPKERRAELAE---AMFPKL 83

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
           + E    +      ++F  R   G + +E+V +    R TLC+SSQ GC + C FC TG 
Sbjct: 84  LTEVKRLETDDGKTIKFLWRLFDGSL-VESVLMRYPGRITLCISSQCGCGMNCPFCATGQ 142

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             L RN++  EIL Q++ A  ++ +      + G   P    ++ NIV MGMGEPL N+ 
Sbjct: 143 AGLTRNMSTAEILDQIVQANRVIAE----GGLGGRQHPD--ERVGNIVFMGMGEPLANYK 196

Query: 196 NVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            V  ++   +A    GL  + R IT+ST G VP I ++ EE + V  A+SLHA  ++LR+
Sbjct: 197 RVMNAVHRMVADTPEGLGMAARGITVSTVGLVPAIRKLTEENVQVTFALSLHAPDDELRD 256

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-- 310
            L+P+N ++ ++  +DA   Y  +   RR++ EY ++K +ND    A  L K L      
Sbjct: 257 ELIPVNSRWKVDEALDAAYDY-YVKTGRRVSIEYALIKDMNDHEWRAEMLAKKLNARGRG 315

Query: 311 -AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
              +N IP NP PG  +  S+      F   +   G  + +R  RG +I  ACGQL +
Sbjct: 316 WVHVNPIPLNPVPGSIWTRSEPDITSKFVRRLDELGVPTTLRDTRGKEIDGACGQLAA 373


>gi|291530132|emb|CBK95717.1| radical SAM enzyme, Cfr family [Eubacterium siraeum 70/3]
          Length = 345

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 179/335 (53%), Gaps = 29/335 (8%)

Query: 36  SQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR 95
           + I++ IY R    F  M+  S +++ LL+  +     +I DE +    T K+L      
Sbjct: 27  ANIFRDIYKRKATGFNEMTLTSADIKALLSDKYFFGKLKI-DEILQSVDTSKYLFELSDG 85

Query: 96  CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
           C      +ETV + +K   ++C+S+Q GC++ C FC +G  +  R+LTA E++ Q+L   
Sbjct: 86  C-----RVETVLMRQKFGNSICISTQSGCNMGCKFCCSGRLRKQRDLTAGEMVSQILTV- 139

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
                    E  + + I       SNI +MG+GEP  N+D +   L I +   G+    +
Sbjct: 140 ---------EKYQNITI-------SNITVMGIGEPFDNYDALCDFLDIVTVPGGIEIGTK 183

Query: 216 RITLSTSGFVPN---IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
            IT+ST G        A+  E     LA+SLHA  +++RN L+PINR+Y +  +I++ ++
Sbjct: 184 HITVSTCGLCDKTELFAKRKEPCN--LAVSLHAPDDEIRNRLMPINRRYSISQVIESAKY 241

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   +N R++  EY++L GINDS  +A  L  ++      +NLIP+NP P  E+  S ++
Sbjct: 242 YVERTN-RKVLLEYILLDGINDSRENARQLAALIGNARLFVNLIPYNPSPDSEFKRSSEE 300

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +I  F + +K++  +   R   G ++ AACGQL+S
Sbjct: 301 NITAFYDELKKNRINVTRRKEFGTELSAACGQLRS 335


>gi|159483801|ref|XP_001699949.1| hypothetical protein CHLREDRAFT_97359 [Chlamydomonas reinhardtii]
 gi|158281891|gb|EDP07645.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 368

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 178/372 (47%), Gaps = 45/372 (12%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73
           ELEE    +G P +    R  Q+++W+Y   + IR+       +                
Sbjct: 11  ELEEWCASVGEPPK----RAKQLYRWLYGNRKWIRNLDQADSDASAFSGAFKAKVLAGGL 66

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGG--PV-----EIETVYIP------EKSRGTLCVSS 120
           ++     + DGTRK +        GG  P       +ETV IP      +  R T C+S+
Sbjct: 67  QLQSVHTARDGTRKLVFALVGDWEGGDGPAGSARGTVETVLIPMTNRQGQNLRYTACLST 126

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C FCYTG   L+ NL+  +I+ QV+ AR  L +       + + IP     I+
Sbjct: 127 QVGCAMNCQFCYTGRMGLLGNLSTAQIVEQVVEARRYLAE-------QEVQIP-----IA 174

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIV MGMGEPL N+D V  ++ I +   GL  S+ +I +ST G VP + R        LA
Sbjct: 175 NIVFMGMGEPLHNYDAVMSAIEILA--TGLELSRNKIIVSTVGLVPEMRRFIASGRAKLA 232

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRH---YPGLSNARRITFEYVMLKGINDSPR 297
           +         R+ +VP NR+YPL+ L+ A R    Y        +  EYV+L G+ND+  
Sbjct: 233 V---------RDWIVPTNRRYPLDQLLGALREAFPYGKRKGDDFVVIEYVLLAGVNDTLA 283

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
           DA  L+ +   I   +NLI FNP  G ++  S   D+  F      +G    +R  +G D
Sbjct: 284 DAERLLALTSDIYCLVNLIVFNPHDGTQFKRSSDDDVRAFRAVFLAAGRPCTVRASKGDD 343

Query: 358 ILAACGQLKSLS 369
            +AACGQL  ++
Sbjct: 344 EMAACGQLGDVN 355


>gi|289803429|ref|ZP_06534058.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 182

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 92/188 (48%), Positives = 116/188 (61%), Gaps = 12/188 (6%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           PE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV  A  ++G       + 
Sbjct: 1   PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVT 56

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
           G       R I+N+VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP +
Sbjct: 57  GQ------RPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPAL 110

Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEY 286
            ++G+ I V LAISLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EY
Sbjct: 111 DKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEY 170

Query: 287 VMLKGIND 294
           VML  +ND
Sbjct: 171 VMLDHVND 178


>gi|308804299|ref|XP_003079462.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
           tauri]
 gi|116057917|emb|CAL54120.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
           tauri]
          Length = 385

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/287 (37%), Positives = 157/287 (54%), Gaps = 36/287 (12%)

Query: 99  GPVEIETVYIP----EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154
           G  ++ET++      +K+R T CVSSQVGC++ CSFC TG Q   RNL+A EI+ QVL  
Sbjct: 115 GRADVETMFRGVDGWDKNRLTACVSSQVGCAMKCSFCATGLQGFKRNLSASEIVSQVLEL 174

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
             L                  G+++S++V MGMGEP+ N   V  ++   ++ +G+    
Sbjct: 175 EELY-----------------GKRVSDVVFMGMGEPMLNMKAVVGAIRCLNEDIGI--GG 215

Query: 215 RRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
           R IT+ST G   ++A++  E++   LAISLHA   + R  +VP  + YP E L+D  + Y
Sbjct: 216 RHITVSTVGIPNSLAKLAKEKLQATLAISLHAPDQETRLRIVPSAKHYPYEDLLDDVKMY 275

Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSD 330
                 RR+TFEY +L G+NDSP  A  L +ILK   G  A +N+IP+N   G +++   
Sbjct: 276 F-RETGRRVTFEYTLLAGVNDSPSQAQALSRILKRKFGAGAHLNVIPWNSIEGVDHVKPS 334

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL------KSLSKR 371
           +  +  F  C    G S  IR  RG D+ AACG L      +SL +R
Sbjct: 335 RNAVHRF--CGALGGISHTIRRTRGDDVSAACGMLTGDFERRSLGRR 379


>gi|326434869|gb|EGD80439.1| radical SAM domain-containing protein [Salpingoeca sp. ATCC 50818]
          Length = 517

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 188/382 (49%), Gaps = 53/382 (13%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78
           E   K+GI  +H      ++W+ I  RG+ D + + ++ + +  L+ + F I   ++   
Sbjct: 22  EECTKLGINHKHA----YKMWRHIIARGVTDVEEIPELPKALYKLVKEKFVITTSKLESF 77

Query: 79  KISCD-GTRKWLLRFPARCI-------GGPVEI--------------ETVYIPEKSRGTL 116
           K S D  T K L+R     +        G VE+              ETV+   K R T+
Sbjct: 78  KTSADESTTKLLIRLQDGALVETVIMRYGRVELRNFPSDRQRRTEDGETVF-ASKERATV 136

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           CVSSQVGC + C+FC TGT  L+ NLTA EIL Q+  A ++                   
Sbjct: 137 CVSSQVGCKMGCTFCATGTMGLLSNLTAGEILEQLYHANTV------------------- 177

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI- 235
            KI N+V MGMGEPL N+D V  ++   +D    S S  RI +ST G VP + ++ E+I 
Sbjct: 178 EKIRNVVFMGMGEPLDNYDAVVMAVRGMTDVQRFSLSPSRIAVSTVGVVPKMLKMAEDIP 237

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY-----PGLSNARRITFEYVMLK 290
            V LA+SLHA + +LR  +VP  + + ++ ++ A  ++        S    +  EYV++ 
Sbjct: 238 QVGLALSLHAPTQELRAQIVPTAKAWHIDRIMAAMDNFIEHRSQVASRKSHVLIEYVLID 297

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKRSGYSSP 349
            +N S   A  L ++L+G    +N+IP+NP     +Y     + +  F+  ++     + 
Sbjct: 298 NVNSSEEVAHQLGRLLEGREVILNVIPYNPTDVPHDYKAPSSETLEKFNAVLREYDLRTI 357

Query: 350 IRTPRGLDILAACGQLKSLSKR 371
           +R   G D+ AACGQL   S+R
Sbjct: 358 VRQELGQDVNAACGQLVISSQR 379


>gi|45658616|ref|YP_002702.1| ribosomal RNA large subunit methyltransferase N [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|81406814|sp|Q72NP7|RLMN_LEPIC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|45601860|gb|AAS71339.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 353

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 183/374 (48%), Gaps = 35/374 (9%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N  +K  L G   +EL E ++ +G        R  QI+  +YV     +   +  S+  +
Sbjct: 9   NQTEKIPLKGRTLKELSEIMITLG----EKPFRAKQIYHGLYVNRYETWDQFTTFSKIFK 64

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVS 119
             L +  S+ + ++V +  S DGT+K+     +   G   E E V+IP  +  R T+C+S
Sbjct: 65  EKLEELCSLTHLQVVKQLKSVDGTQKFTFTSES---GNGKEFEAVWIPSGDGGRKTICIS 121

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ+GC+L C FC T   +   NL A EI+ Q+L    ++GD                 K 
Sbjct: 122 SQIGCTLNCKFCATAKLEFQGNLKAHEIVDQILQVEKIVGD-----------------KA 164

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VM 238
           +N+V MGMGEPL N+ NV ++ SI  D   L+   +RIT+STSG V  I R  E      
Sbjct: 165 TNVVFMGMGEPLHNYFNVIRAASIFHDPDALNLGAKRITISTSGVVNGIRRFIENKEPYN 224

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
            AISL+      R  ++ I  K+ L  L+ A + +      RRITFEYVM+ G+N    +
Sbjct: 225 FAISLNHPDPKGRLQIMDIEEKFSLPELLQAAKDFT-RELKRRITFEYVMIPGVNMGFEN 283

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLC---SDQKDIVTFSECIKRSGYSSPIRTPRG 355
           A  L+KI K +  KIN+IP N     E+       +++I  F   ++ +G     R   G
Sbjct: 284 ANKLVKIAKSLDCKINVIPLN----TEFFGWRRPTREEIAEFIALLEPAGVPILNRRSPG 339

Query: 356 LDILAACGQLKSLS 369
            DI  ACG L S S
Sbjct: 340 KDIFGACGMLASKS 353


>gi|162449851|ref|YP_001612218.1| hypothetical protein sce1580 [Sorangium cellulosum 'So ce 56']
 gi|205829637|sp|A9FD89|Y1580_SORC5 RecName: Full=Probable RNA methyltransferase sce1580
 gi|161160433|emb|CAN91738.1| hypothetical protein sce1580 [Sorangium cellulosum 'So ce 56']
          Length = 398

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 149/297 (50%), Gaps = 20/297 (6%)

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           EI +   + D T + +LR      G    IE+V IP  +R TLCVSSQVGC+  CSFC T
Sbjct: 115 EIAERAPAQDDTLRLVLR-----AGDGALIESVLIPGPARTTLCVSSQVGCARACSFCET 169

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   L R L A EI+ QV +AR+L  +  G               + N+V MGMGEP  N
Sbjct: 170 GRLGLERQLAAGEIVDQVRIARALAAERGGA-------------PLRNLVFMGMGEPFDN 216

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253
              V K++ + +D     F+   +T+ST G    I     +    LA+SL+A  +  R  
Sbjct: 217 LGEVLKAIRLLTDPRAFRFAPSHVTVSTVGVADKIEPFFRDARAELAVSLNAPDDARRQA 276

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           ++P+N ++ +  L +A      L   RR+ FEYV+    ND+P DA  L   + G+  ++
Sbjct: 277 IMPVNARFSMAALKEAIAR--ALPPGRRVLFEYVLFDRFNDAPEDADLLAAYVAGLRCRV 334

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           N+IP NP P           +  F   +   G ++ +R PRG D+  ACGQL  +++
Sbjct: 335 NVIPCNPGPDPALRPPSAARLDAFVARLSGHGVTTLVRRPRGRDVGGACGQLAGMAR 391


>gi|183220754|ref|YP_001838750.1| ribosomal RNA large subunit methyltransferase N [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910855|ref|YP_001962410.1| ribosomal RNA large subunit methyltransferase N [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|205829783|sp|B0SGA8|RLMN_LEPBA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829784|sp|B0SPQ8|RLMN_LEPBP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|167775531|gb|ABZ93832.1| Fe-S-cluster redox enzyme [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779176|gb|ABZ97474.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 353

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 186/369 (50%), Gaps = 46/369 (12%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L G  ++ELEE  + +G+     + R +QI+  IY          + +S+EVR  L +H 
Sbjct: 8   LKGKTKKELEEICVSLGLE----KYRAAQIYTGIYKSRYTTIDQFTTLSKEVREKLKEHT 63

Query: 69  SIIYPEIV---DEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVG 123
              YPEI    D     DGTRK+        +G   EIE V+IP  +  R T+C+SSQ+G
Sbjct: 64  Q--YPEIEIGRDLVSKEDGTRKFTF-----YVGENKEIEAVWIPSGDGGRKTICISSQIG 116

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C FC TG  +   NL   +IL QVL    L+GD                 + +NIV
Sbjct: 117 CTLNCKFCATGLLEYKGNLQTWQILDQVLQVERLVGD-----------------RATNIV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242
            MGMGEP+ N+ +V K+  I  D         RIT+ST+G    I R  E       AIS
Sbjct: 160 FMGMGEPMHNYFSVMKAAHILRDKDAFGLGALRITISTAGVTTGINRFIENKEPFNFAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+  + + R+ ++ +N K+PLE LID+ + +    + R ITFEYVM+  +N    +A  L
Sbjct: 220 LNHPNPNARSSVMDVNDKHPLEKLIDSAKRFTKELD-RAITFEYVMIPDVNMGRDNAERL 278

Query: 303 IKILKGI-PAKINLIPFNP-WPGCEYLCSDQ-KDIVTFSECIKRSGYSSPI---RTPRGL 356
            KI + +   KIN+IP N  + G      D+ KD V       ++  ++PI   R+P G 
Sbjct: 279 AKIARSVNKCKINVIPLNTDFTGWRRPTDDEVKDFVMHL----KAKTTAPILNRRSP-GR 333

Query: 357 DILAACGQL 365
           DI  ACG L
Sbjct: 334 DINGACGML 342


>gi|282895427|ref|ZP_06303564.1| Putative uncharacterized protein [Raphidiopsis brookii D9]
 gi|281199460|gb|EFA74323.1| Putative uncharacterized protein [Raphidiopsis brookii D9]
          Length = 300

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/286 (36%), Positives = 153/286 (53%), Gaps = 27/286 (9%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+  WIY  G+     +S   +  R  +    SI    +  +  + DGT K+LL   
Sbjct: 41  RGKQLHNWIYHHGVHRISDISVFPKTWREQVTD-VSIGRSSVNYQCSATDGTVKYLLNLA 99

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
              I     IETV IP   R T+CVS+QVGC + C FC TG     RNL   EI+ QVL 
Sbjct: 100 DGEI-----IETVGIPSDKRLTVCVSTQVGCPMACDFCATGKGGFKRNLNRGEIVDQVLT 154

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
            +         ED +        +++S++V MGMGEPL N +NV  +L   +  +G+   
Sbjct: 155 VQ---------EDFQ--------QRVSHVVFMGMGEPLLNTENVILALKCLNQDLGI--G 195

Query: 214 KRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           +R +T+ST G    I ++ E  + V LA+SLHA +  LR  ++P  + YP+E L+  CR 
Sbjct: 196 QRSLTVSTVGIRDRIRQLAEHHLQVTLAVSLHAPNQILREQIIPSAKTYPIEQLLAECRQ 255

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           Y  ++  RR+TFEY++L G+ND P  AL L + L+G  + +NLIP 
Sbjct: 256 YVEIT-GRRVTFEYILLSGVNDLPEQALELSQRLRGFQSHVNLIPL 300


>gi|145347191|ref|XP_001418058.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578286|gb|ABO96351.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 369

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/354 (34%), Positives = 177/354 (50%), Gaps = 42/354 (11%)

Query: 34  RTSQIWKWIY-VRGIRDFQGMSDISQEVRH-LLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R +QI + +Y  R  R  +  S I +E+R  L+   +      +    +S  GT K  LR
Sbjct: 35  RATQIREHLYGARRCRRIEDFSLIPREMRDALVAGGYRTGRLAVESASVSGCGTGKVSLR 94

Query: 92  FPARCIGGPVEIETVYIPEKS----------RGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
              R +     IE V IP+ S          R T CVSSQVGC++ C+FC TG Q   RN
Sbjct: 95  VGEREV-----IEAVGIPDASCWRASAEAENRLTACVSSQVGCAMKCTFCATGMQGYKRN 149

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           LT  EI  QV+    L                  G+++S +V MGMGEP+ N  +V +++
Sbjct: 150 LTPAEITAQVIELEELY-----------------GKRVSQVVFMGMGEPMLNIKSVVQAI 192

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRK 260
              ++ +G+    R IT+ST G   ++ ++  E++ + LAISLHA     R  +VP  + 
Sbjct: 193 RCLNEDVGI--GGRHITVSTVGIPNSLKKLAKEKLAITLAISLHAPDQHTRAKIVPSAKY 250

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIP 317
           YP+E L++  R Y      RR+TFEY +L G+NDSP  A  L ++LK   G  A +N+IP
Sbjct: 251 YPMEDLLNDARAYFK-ETGRRVTFEYTLLAGVNDSPSQAKALSRMLKRKFGTGAHVNIIP 309

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           +N   G  +       I  F   ++  G +  IR  RGLD  AACG L    +R
Sbjct: 310 WNNIDGINHTRPSGNAIHRFCAQLE-GGVTHTIRRTRGLDTNAACGMLTGAFER 362


>gi|24213541|ref|NP_711022.1| ribosomal RNA large subunit methyltransferase N [Leptospira
           interrogans serovar Lai str. 56601]
 gi|81589793|sp|Q8F7V1|RLMN_LEPIN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|24194325|gb|AAN48040.1| predicted Fe-S-cluster redox enzyme [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 353

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 182/374 (48%), Gaps = 35/374 (9%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N  +K  L G   +EL E ++ +G        R  QI+  +YV     +   +  S+  +
Sbjct: 9   NQTEKIPLKGRTLKELSEIMITLG----EKPFRAKQIYHGLYVNRYETWDQFTTFSKIFK 64

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVS 119
             L +  S+ + ++V +  S DGT+K+     +   G   E E V+IP  +  R T+C+S
Sbjct: 65  EKLEELCSLTHLQVVKQLKSVDGTQKFTFTSES---GNGKEFEAVWIPSGDGGRKTICIS 121

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ+GC+L C FC T   +   NL A EI+ Q+L    ++GD                 K 
Sbjct: 122 SQIGCTLNCKFCATAKLEFQGNLKAHEIVDQILQVEKIVGD-----------------KA 164

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VM 238
           +N+V MGMGEPL N+ NV ++ SI  D    +   +RIT+STSG V  I R  E      
Sbjct: 165 TNVVFMGMGEPLHNYFNVIRAASIFHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYN 224

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
            AISL+      R  ++ I  K+ L  L+ A + +      RRITFEYVM+ G+N    +
Sbjct: 225 FAISLNHPDPKGRLQIMDIEEKFSLPELLQAAKDFT-RELKRRITFEYVMIPGVNMGFEN 283

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLC---SDQKDIVTFSECIKRSGYSSPIRTPRG 355
           A  L+KI K +  KIN+IP N     E+       +++I  F   ++ +G     R   G
Sbjct: 284 ANKLVKIAKSLDCKINVIPLN----TEFFGWRRPTREEIAEFIALLEPAGVPILNRRSPG 339

Query: 356 LDILAACGQLKSLS 369
            DI  ACG L S S
Sbjct: 340 KDIFGACGMLASKS 353


>gi|167751032|ref|ZP_02423159.1| hypothetical protein EUBSIR_02017 [Eubacterium siraeum DSM 15702]
 gi|167655950|gb|EDS00080.1| hypothetical protein EUBSIR_02017 [Eubacterium siraeum DSM 15702]
          Length = 345

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 173/333 (51%), Gaps = 25/333 (7%)

Query: 36  SQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR 95
           + I++ IY R    F  M+  S +++  L+  +     +I DE +    T K+L      
Sbjct: 27  ANIFRDIYKRRASGFDEMTLTSADIKAFLSDKYFFGKLKI-DEILQSVDTSKYLFELSDG 85

Query: 96  CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
           C      +ETV + +K   ++C+S+Q GC++ C FC +G  +  R+LTA E++ Q+L   
Sbjct: 86  C-----RVETVLMRQKFGNSICISTQSGCNMGCKFCCSGRLRKQRDLTAGEMVSQIL--- 137

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
                          V       I NI +MG+GEP  N+D +   L I +   G+    +
Sbjct: 138 --------------AVEKHQNITIGNITVMGIGEPFDNYDALCDFLDIVTVPGGIETGTK 183

Query: 216 RITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
            IT+ST G         E      LA+SLHA  +++RN L+P+NR+Y +  +I++ ++Y 
Sbjct: 184 HITVSTCGLCDKTKLFAERKEPCNLAVSLHAPDDEIRNRLMPVNRRYSISQVIESAKYYV 243

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334
             +N R++  EY++L GINDS  +A  L  ++      +NLIP+NP P  E+  S +++I
Sbjct: 244 ERTN-RKVLLEYILLDGINDSRENARQLAALIGNARLFVNLIPYNPSPDSEFKRSSEENI 302

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             F + +K++  +   R   G ++ AACGQL+S
Sbjct: 303 TAFYDELKKNRINVTRRKEFGTELSAACGQLRS 335


>gi|167526355|ref|XP_001747511.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773957|gb|EDQ87591.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1527

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 118/380 (31%), Positives = 187/380 (49%), Gaps = 56/380 (14%)

Query: 23  KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC 82
           ++GI   HV     ++W+ I   G+ + + + ++ +++  ++ + F++    +V E+ S 
Sbjct: 593 QLGIADDHVW----RMWRAILHNGVTNVRDIPELPKKLYQVIEEKFALTTSRLVKEETSA 648

Query: 83  DGTRKWLL----------------------RFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           D T   LL                       FP        + E  ++  K R T+CVSS
Sbjct: 649 DNTTTKLLIELQDGAQIETVIMRYGRFELRNFPEDAQKKSSDGEVSFV-SKERATVCVSS 707

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C+FC TGT  L+ NL A EIL Q+  A  +                    KI 
Sbjct: 708 QVGCQMGCTFCATGTMGLMSNLAAGEILEQLYHANQV-------------------EKIR 748

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
           N+V MGMGEPL N+D V+ ++S  +D    S    +I++ST G VP I ++ E++  V L
Sbjct: 749 NVVFMGMGEPLDNYDAVRFAVSAMTDVRRFSLGASKISVSTVGVVPRIHQMVEDMPDVGL 808

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHY----PGLSNARR--ITFEYVMLKGIN 293
           A+SLHA + +LR  +VP  R + L+ +++A  H+       S  RR  I  EYV++  +N
Sbjct: 809 ALSLHAPNQELREEIVPSGRSWHLDRIMEAIDHFQETRQETSRRRRTHILIEYVLIDEVN 868

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPW--PGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
            +   A  L  +LK     +N+IP+NP   P  +Y    +     F+E ++  G  + IR
Sbjct: 869 STEEVAHQLGHLLKDRDVLVNVIPYNPTDVPH-DYKPPSRATTDRFNEIVRSYGLRTIIR 927

Query: 352 TPRGLDILAACGQLKSLSKR 371
              G D+ AACGQL   S+R
Sbjct: 928 QELGQDVNAACGQLVVRSQR 947


>gi|307824710|ref|ZP_07654934.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
 gi|307734364|gb|EFO05217.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
          Length = 217

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/228 (43%), Positives = 133/228 (58%), Gaps = 15/228 (6%)

Query: 142 LTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
           +T  EI+ Q L A R L  + PG E            +I NIV MG GEPL NFD VKK+
Sbjct: 1   MTTSEIVGQFLQAWRWLAKNRPGEE------------RILNIVFMGQGEPLHNFDAVKKA 48

Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINR 259
             I     G S   ++IT+ST+G++P + R  +EI GV LA+SLH+   + RN L+PIN+
Sbjct: 49  CEIFLSKHGTSIGVQKITISTAGYIPGLKRWSQEIPGVNLALSLHSPFEEKRNELIPINK 108

Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
           KYPL+ ++      P L+  + IT+EY+++K  NDSP DA  L  IL G  A INLIPFN
Sbjct: 109 KYPLDEVLATIDKIP-LNKKQFITYEYILIKDFNDSPDDAKKLGTILAGKSAYINLIPFN 167

Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +PG  Y   D   I  F E +      + IR+ +G D+LAACGQL S
Sbjct: 168 SFPGSHYKRPDLDKIEKFKEVLDTFKIPTLIRSAKGDDVLAACGQLNS 215


>gi|169333679|ref|ZP_02860872.1| hypothetical protein ANASTE_00063 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259673|gb|EDS73639.1| hypothetical protein ANASTE_00063 [Anaerofustis stercorihominis DSM
           17244]
          Length = 342

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 176/338 (52%), Gaps = 28/338 (8%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLL 90
           + R  QI+KW+Y   ++    M+++S  +R  L + + I + ++  +       T K+LL
Sbjct: 24  KFRAKQIFKWLYDSYVKSIDEMTNLSLSLREKLKEEYYINHLKLEKKFKEEKSSTTKFLL 83

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
           +         + IE V +  ++  TLCVS+Q GC + C FC +G   L+RNLT  EIL +
Sbjct: 84  KTE-----DDILIECVLLRYEAGATLCVSTQAGCRMGCVFCESGKCGLIRNLTKGEILNE 138

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           + L   +       EDI          +ISNIV+MG GEPL N+D V   L + +D   L
Sbjct: 139 IYLVSEI-------EDI----------RISNIVLMGSGEPLDNYDEVVGFLKLVTDVNTL 181

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           + SKR ITLST G    I  + +  + + LA+SLHA  +++R  ++PI +   +E ++DA
Sbjct: 182 NMSKRSITLSTCGIKDKIYSLADSGLDINLALSLHAPFHEMRESMMPIEKANNIEEVLDA 241

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
             +Y      RRIT+EY +++G ND+      L  + KG  + IN+I  N          
Sbjct: 242 TFYYRS-KTGRRITYEYCLIEGKNDTIECIDKLYDLFKGTDSLINVIGVNDSSKKRV--- 297

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           + K I  F + ++  G +  IR   G  I AACGQLKS
Sbjct: 298 NDKYIHAFVDKLRNKGINVTIRRRLGSSINAACGQLKS 335


>gi|298708530|emb|CBJ49163.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 425

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 178/342 (52%), Gaps = 25/342 (7%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSD-ISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
           R   +W  +   G+  F   ++ ++ +   +L      +  ++V E +S  GTRK L++ 
Sbjct: 81  RAKMVWSALSA-GVDPFGDAAEFLTDKTAAVLKDTVERLPWQVVRESVSSCGTRKLLVQ- 138

Query: 93  PARCIGGPVEIETVYIPE--KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
               +   +E+ETV IP+   SR T+CVSSQ+GC+  C FC TG   LVRNLTA EIL Q
Sbjct: 139 ----LEDGLEVETVVIPDLSGSRSTVCVSSQIGCAKNCQFCMTGKMGLVRNLTAGEILGQ 194

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           V  AR         E +    +P     ++N V MGMGEPL N   V +SL + +     
Sbjct: 195 VFFAR---------ETVREHGMP----PLTNAVYMGMGEPLDNPGAVTQSLQVLTHPFAF 241

Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
           + +K +I++ST G  P   R  + +   LA S+HA ++D+R +LVP    + +  L DA 
Sbjct: 242 AMAKSKISVSTVGPSPAAIRRMKGMPSRLAWSVHAATDDVRRLLVPTT-VHSMAELRDAF 300

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYLC 328
                      +  E V+++G+NDSP  A  L  +L+ +P  A INL+P+N      +  
Sbjct: 301 AEVLQSRRREHLFVEVVLIEGMNDSPELARALASLLRPLPIRAGINLLPYNDTGHPFFRA 360

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           S ++ +  F   + + G+ + IRT RG +  +ACGQL + + 
Sbjct: 361 SPKESVEEFQRVLTQEGFVATIRTARGDEESSACGQLATTAN 402


>gi|297626635|ref|YP_003688398.1| hypothetical protein PFREUD_14730 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922400|emb|CBL56972.1| Hypothetical protein PFREUD_14730 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 375

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 186/365 (50%), Gaps = 29/365 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +E  EA+  +G+P      R  QI    + R   D +  +D+   VR   ++    ++P+
Sbjct: 29  DERIEAVRALGLPA----FRAKQISTHWFSRCEHDPRQWTDLPAAVR---DEVADKLFPQ 81

Query: 75  IVD--EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
           ++   + +S D  R   ++   +   G + +E+V +    R T+C+SS+ GC++ C FC 
Sbjct: 82  LLTPVQALSADHGRT--VKVAWQLHDGSL-VESVLMRYPHRTTICISSEAGCAMNCPFCA 138

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           TG   L RNL+  EI+ QVL          G   +    IP    +I+N+V MGMGEP+ 
Sbjct: 139 TGQGGLQRNLSTAEIVGQVL---------DGARRLANGEIPGGPGRINNVVFMGMGEPMA 189

Query: 193 NFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
           NF  V  ++      +  GL  S R +T+ST G VP I  + +  I   LAISLHA  ++
Sbjct: 190 NFKAVLGAVREITRPEPDGLGISARGVTVSTIGMVPRINELSDTGIPATLAISLHAPDDE 249

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           LR+ LVP+N+ + ++ ++DA   Y   +  RR++ EY ++K IND    A  L + LK  
Sbjct: 250 LRDELVPLNKHFNIDAVLDAAWAY-AENTKRRVSIEYALIKDINDQSWRADLLARRLKER 308

Query: 310 P----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                  +NLIP NP PG ++  S ++D   F   ++       +R  RG +I  ACGQL
Sbjct: 309 GDWGWCHVNLIPLNPTPGSKWTASRREDEEAFVRHLENHHVPVTVRDTRGREIDGACGQL 368

Query: 366 KSLSK 370
            +  K
Sbjct: 369 AAAVK 373


>gi|291556918|emb|CBL34035.1| radical SAM enzyme, Cfr family [Eubacterium siraeum V10Sc8a]
          Length = 345

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 175/333 (52%), Gaps = 25/333 (7%)

Query: 36  SQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR 95
           + I++ IY R    F  M+  S +++ LL+  +     +I DE +    T K+L      
Sbjct: 27  ANIFRDIYKRRASGFDEMTLTSADIKALLSDKYFFGKLKI-DEILQSVDTSKYLFELSDG 85

Query: 96  CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
           C     ++ETV + +K   ++C+S+Q GC++ C FC +G  +  R+LTA E++ Q+L   
Sbjct: 86  C-----KVETVLMRQKFGNSICISTQSGCNMGCKFCCSGRLRKQRDLTAGEMVSQIL--- 137

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
                          V       ISN  +MG+GEP  N+D +   L I +   G+    +
Sbjct: 138 --------------AVEKHQNITISNTTVMGIGEPFDNYDALCDFLDIVTVPGGIETGTK 183

Query: 216 RITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
            IT+ST G    +    E      LA+SLHA  +++RN L+P+NR+Y +  +I++ ++Y 
Sbjct: 184 HITVSTCGLCDKMKLFAERKEPCNLAVSLHAPDDEIRNRLMPVNRRYSISQVIESAKYYV 243

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334
             +N R++  EY++L GINDS  +A  L  ++      +NLIP+NP    E+  S +++I
Sbjct: 244 ERTN-RKVLLEYILLDGINDSRENARQLAALIGNARLFVNLIPYNPSHDSEFKRSSEENI 302

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             F + +K++  +   R   G ++ AACGQL+S
Sbjct: 303 TAFYDELKKNRINVTRRKEFGTELSAACGQLRS 335


>gi|171912540|ref|ZP_02928010.1| hypothetical protein VspiD_15210 [Verrucomicrobium spinosum DSM
           4136]
          Length = 368

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/320 (34%), Positives = 165/320 (51%), Gaps = 33/320 (10%)

Query: 64  LNQHFSIIYPEIV----DEKISCDGTRKWLLRFPARCIGGPVE--IETVYIPEKSRGTLC 117
           L QH    +P  V      ++S DGT K LLR P    G  VE  +   Y PE++ G  C
Sbjct: 65  LVQHIHSTFPATVATLAQRQVSEDGTCKLLLRLPD---GRTVESVLMPDYHPERAAG--C 119

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVG 176
           +SSQVGC++ C FC T      RNLT+ EI+ Q + L R   G                G
Sbjct: 120 ISSQVGCAMGCDFCATTQTGFERNLTSGEIVEQFIHLRREARG---------------AG 164

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EI 235
           R +  +V MGMGEP+ N  +V  ++   +D    +   R++T+ST G VP I  + E  +
Sbjct: 165 RALRTVVFMGMGEPMLNLRHVLPAVERMADPRLGALGWRQVTISTVGIVPGIEELTEANL 224

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
           GV LA+SLHA  ++ R  ++P+ R++P++ +++A   Y   S  R  T +Y +L+G+NDS
Sbjct: 225 GVHLAVSLHAPDDETRTAILPMGRRFPVQDILEAADRYQEKS-GRITTIQYCLLEGVNDS 283

Query: 296 PRDALNLIKILKGIPAKINLIPFNP----WPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
              A +L  ++K     INL+ +NP      G  Y  S  +   +F   ++  G  + +R
Sbjct: 284 LNQARDLANLMKDRRMHINLLRYNPTGLSLKGRTYAPSSMEQTESFLATLRECGAVAHLR 343

Query: 352 TPRGLDILAACGQLKSLSKR 371
             RG DI AACGQL+    R
Sbjct: 344 RARGPDIDAACGQLRKREGR 363


>gi|187251578|ref|YP_001876060.1| radical SAM enzyme, Cfr family [Elusimicrobium minutum Pei191]
 gi|186971738|gb|ACC98723.1| Radical SAM enzyme, Cfr family [Elusimicrobium minutum Pei191]
          Length = 343

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 184/360 (51%), Gaps = 31/360 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  E++++ + + G P      R +Q+   +Y  GI D+     +  ++++ L  +F+I+
Sbjct: 1   MNFEKIKDFIKENGFPA----YRIAQVKDAVYKNGITDWNKAVALPADLKNKLKDNFNIL 56

Query: 72  YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
                  + S  D T K LL+         ++IETV +      T+CVS+QVGC + CSF
Sbjct: 57  SFTAAKMQFSDKDRTAKALLKLE-----DGLKIETVLMRMGDVWTVCVSTQVGCPVGCSF 111

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TG  +  R+LT EEI  QVL   S +                + ++I+N+V MGMGEP
Sbjct: 112 CSTGKMRFKRDLTDEEISDQVLFWLSYIKQ------------EKLAQRINNVVFMGMGEP 159

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSND 249
           L N+ N  K++   S+   L    R I++STSG       +  ++  V LA+SLH+  +D
Sbjct: 160 LFNYLNTVKAVKEISNPDRLGIGMRHISISTSGVADKFHNLAVDLPQVNLALSLHSADDD 219

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            RN +VP+NRK+ LE L  A   Y  ++  R++  EY +++G+ND P     L K + G+
Sbjct: 220 ERNKIVPLNRKFNLETLQKALTEYIAMT-GRQVFIEYTVVEGVNDRPEHIRLLGKWISGV 278

Query: 310 PAK----INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                  +NLI  N   G     + +K +  F++ ++    S  IR   G DILAACGQL
Sbjct: 279 KDNYLLHVNLIACNMGKGK---TTSEKQVKLFAKGLQGLHISVTIRKSLGNDILAACGQL 335


>gi|256832241|ref|YP_003160968.1| radical SAM enzyme, Cfr family [Jonesia denitrificans DSM 20603]
 gi|256685772|gb|ACV08665.1| radical SAM enzyme, Cfr family [Jonesia denitrificans DSM 20603]
          Length = 376

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 179/364 (49%), Gaps = 28/364 (7%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  +E  + + ++G    H   R  Q+    +     +   M+D+  + +  L      +
Sbjct: 30  MTPQERRDVVTELG----HQPFRAKQLETHYFSHLTDNADEMTDLPAQAKSEL---VGAL 82

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
            P +V +  + +      ++   R   G ++IE+V +   +R TLCVSSQ GC + C FC
Sbjct: 83  MPPLVSKIRTLEADGGATVKTLWRLFDG-IKIESVLMRYPTRSTLCVSSQAGCGMACPFC 141

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
            TG   L RNL+  EI+ QV  A   L  G+ PG               ++N+V MGMGE
Sbjct: 142 ATGQMGLTRNLSTAEIVEQVRQAARALAQGEIPGG-----------ATHLNNLVFMGMGE 190

Query: 190 PLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           PL N+  +  ++   +A    G   S R IT+ST G VP I ++ +E + + LA+SLHA 
Sbjct: 191 PLANYKALMGAVRQFVAPSPQGFGLSARNITVSTVGLVPAINKLAKEGLPLTLALSLHAP 250

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++LR+ LVPIN ++ ++  +DA   Y   +  RR++ EY ++K +ND    A  L + L
Sbjct: 251 DDELRSQLVPINTRWTVDEALDAAYGYYD-ATGRRVSIEYALIKDMNDHAWRADLLGEKL 309

Query: 307 KGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
                    +N IP NP PG  +  SD+     F   ++     + IR  RG DI  ACG
Sbjct: 310 NARGRGWVHVNPIPLNPTPGSIWTASDRDVEQEFVRRLRSHNIPTTIRDTRGSDIDGACG 369

Query: 364 QLKS 367
           QL +
Sbjct: 370 QLAA 373


>gi|302339631|ref|YP_003804837.1| radical SAM enzyme, Cfr family [Spirochaeta smaragdinae DSM 11293]
 gi|301636816|gb|ADK82243.1| radical SAM enzyme, Cfr family [Spirochaeta smaragdinae DSM 11293]
          Length = 356

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 174/342 (50%), Gaps = 29/342 (8%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII--YPEIVDEKISCDGTRKWLL 90
            R  Q+++ +  +GI  +  +S +S   R+ L++  S+    P   DE  + DG+ K LL
Sbjct: 33  FRGKQVFRALQ-QGISSWTQISTLSLNDRNRLSEEASLFSSVPTRFDE--ASDGSAKLLL 89

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
                 I G      + + E  R T C+SSQVGC++ C+FC TGT  L+RNL+  EIL Q
Sbjct: 90  EL----IDGRFVESVLLVDESGRKTACLSSQVGCAMRCAFCRTGTMGLLRNLSTGEILEQ 145

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
               ++  G+                  ISNIV MGMGEPL N   V+K+++I +   G 
Sbjct: 146 YYHLKNRYGE------------------ISNIVFMGMGEPLANLPPVQKAIAILNHPEGP 187

Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGV-MLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
               R+IT+ST G V  I  + E   +  LA SL      LR  L+P+++  PL  L  A
Sbjct: 188 GIGIRKITVSTCGIVDGIRSLSETALIPRLACSLVTADPKLRQRLMPVSKANPLPELKQA 247

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
              Y   S  RRIT E V+L GIN +   A  +    +G+   +N+IP+NP  G ++   
Sbjct: 248 LHFYQEKSK-RRITLECVLLGGINSAEEQAQGVADFARGLSVLVNVIPWNPTEGLDFRPP 306

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             ++I+ + + ++++G +   R  RG +I  ACGQL  L  R
Sbjct: 307 SDQEIIRYRKRLEQAGIAVSRRYRRGSEINGACGQLAVLENR 348


>gi|196234588|ref|ZP_03133408.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
 gi|196221334|gb|EDY15884.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
          Length = 364

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 163/316 (51%), Gaps = 35/316 (11%)

Query: 64  LNQHFSIIYPE----IVDEKISCDGTRKWLLRFPARCIGGPVEIETV----YIPEKSRGT 115
           L +     +P+    +   ++S DGT K LLR     +G    +E+V    Y PE++ G 
Sbjct: 63  LRERLRATFPQEAAVLARRQVSEDGTAKLLLR-----MGDGRTVESVLMPDYHPERAAG- 116

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
            C+SSQVGC++ C FC T      RNLT+ EI+ Q L  R         E +      + 
Sbjct: 117 -CISSQVGCAMGCDFCATTQTGFERNLTSGEIVEQFLQLRR--------EAV------AA 161

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEE 234
           GR +  IV MGMGEP+ N  NV  ++    D    +F  R+IT+ST G VP I  +   +
Sbjct: 162 GRVLRTIVFMGMGEPMLNLRNVLAAVRRIGDPKLGAFGWRQITISTVGIVPGIDELRAAD 221

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           +GV LAISLHA  +  R  L+P+ R++ +E ++ A   Y   S+ R  T +Y +L G+ND
Sbjct: 222 LGVQLAISLHAPDDATRADLLPMGRRFAVEDVLAAADRYQA-SSGRVTTIQYCLLDGVND 280

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           S   A +L ++L G    +NL+ +NP      G  Y  S  +    F   ++  G  + +
Sbjct: 281 SLAQARDLSRLLAGRTMHVNLLRYNPTGLSLRGRTYAPSSVEQTEAFLAELRAHGTVAHL 340

Query: 351 RTPRGLDILAACGQLK 366
           R  RG DI AACGQL+
Sbjct: 341 RRARGPDIDAACGQLR 356


>gi|257458205|ref|ZP_05623359.1| radical SAM enzyme, Cfr family [Treponema vincentii ATCC 35580]
 gi|257444499|gb|EEV19588.1| radical SAM enzyme, Cfr family [Treponema vincentii ATCC 35580]
          Length = 348

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 178/360 (49%), Gaps = 39/360 (10%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
           GM+ EE+        +PQR    ++ QI++WI  RG   F  M+++  + R  L    S+
Sbjct: 16  GMLPEEIATV---CNLPQR---FQSVQIFQWI-ARGCTSFAEMTNLPLKERERLA---SV 65

Query: 71  IYP-EIVDEKI--SCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGCSL 126
             P   V E +    DGT K  +      +     IETV + +K  R T CVS QVGC +
Sbjct: 66  YTPRNTVCETVLKDPDGTVKLGIG-----LYDGSSIETVLLFDKHERRTACVSCQVGCPM 120

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG    +RNL+  EI+ Q L    + G                  K+ NIV MG
Sbjct: 121 GCTFCQTGQLGCLRNLSPNEIVEQFLHLEKICG------------------KLDNIVFMG 162

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
           MGEPL N D++ K++++ +   G + S RRITLSTSG    I  + E ++ + LA+SL  
Sbjct: 163 MGEPLLNLDSIAKTIAVLTHPKGRNLSHRRITLSTSGICKGIYELAERQLDIRLAVSLTT 222

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
               LR  L+P+ +  PL  L  A R++   ++ +R+T E  +LK +N S + A  +   
Sbjct: 223 ADEALRTTLMPVTKANPLSELKKAIRYFNDKTD-KRVTLELALLKDVNTSYKAAQQVRDF 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +G+   INLIP+NP     Y      +I +F   +     +  +R  RG  I  ACGQL
Sbjct: 282 AEGLNVHINLIPWNPVQQLPYSTPSDSEIRSFYNYLTAENLNVTVRQKRGRTIGGACGQL 341


>gi|116328894|ref|YP_798614.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330499|ref|YP_800217.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122281743|sp|Q04UG1|RLMN_LEPBJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|122283323|sp|Q04Z14|RLMN_LEPBL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|116121638|gb|ABJ79681.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124188|gb|ABJ75459.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 351

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 178/367 (48%), Gaps = 37/367 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L G   +EL E ++ +G        R  QI+  +YV     ++  +  S+ ++  L    
Sbjct: 16  LKGRTLKELSEIMVSLG----EKSFRAKQIYHGLYVNRYESWEQFTTFSKTLKEKLEGLC 71

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVGCSL 126
           S+    +V    S DGT+K+     A   G   E E V+IP  +  R T+C+SSQVGC+L
Sbjct: 72  SLTQLTVVKHLKSVDGTQKFTF---ASEQGK--EFEAVWIPSGDGGRKTICISSQVGCTL 126

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC T   +   NL A EI+ QVL    ++GD                   +N+V MG
Sbjct: 127 NCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGD-----------------NATNVVFMG 169

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHA 245
           MGEP  N+ NV ++ SI  D   L+   +RIT+STSG V  I R  E       AISL+ 
Sbjct: 170 MGEPFHNYFNVIRAASILHDPDALNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNH 229

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              + R  ++ I  K+ L  L+ A + +      RRITFEYVM+ G++  P +A  L+KI
Sbjct: 230 PDPNGRLQIMDIEEKFALSELLQAAKDFT-RELKRRITFEYVMIPGVSMGPENANKLVKI 288

Query: 306 LKGIPAKINLIPFNPWPGCEYLC---SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + +  KIN+IP N     E+       ++++  F   ++ +G     R   G DI  AC
Sbjct: 289 ARSLDCKINVIPLN----TEFFGWRRPTKQEVAEFITLLEPAGVPILNRRSPGKDIFGAC 344

Query: 363 GQLKSLS 369
           G L S S
Sbjct: 345 GMLASKS 351


>gi|222872785|gb|EEF09916.1| predicted protein [Populus trichocarpa]
          Length = 302

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 72/118 (61%), Positives = 94/118 (79%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+ LIG+ REE+ +AL  IG+P+R V MR  Q+W W+YVRG+ DF  M +IS+E+R  
Sbjct: 185 VEKKPLIGLSREEMAQALASIGVPERQVNMRVRQLWHWLYVRGVSDFSRMFNISKELRAK 244

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L++HF+I  PEIV+E+IS DGTRKWLLRFP R  G PVE+ETVYIPE+ RGTLC+SSQ
Sbjct: 245 LDEHFTIARPEIVEEQISQDGTRKWLLRFPPRGAGRPVEVETVYIPEEDRGTLCISSQ 302


>gi|332670033|ref|YP_004453041.1| radical SAM enzyme, Cfr family [Cellulomonas fimi ATCC 484]
 gi|332339071|gb|AEE45654.1| radical SAM enzyme, Cfr family [Cellulomonas fimi ATCC 484]
          Length = 374

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 169/341 (49%), Gaps = 20/341 (5%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+    +     D   M+D+ +  R  L +    ++P ++    +    +   ++ 
Sbjct: 45  FRAKQLATHYFTHLTSDPAAMTDLPKATRDKLVEG---LFPTLLTAHRTLTADQGTTVKT 101

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                 G  ++E+V +   +R TLC+SSQ GC L C+FC TG   L RNL+  EI+ QV 
Sbjct: 102 LWHLFDG-AKVESVLMRYANRTTLCISSQAGCGLACAFCATGQLGLTRNLSTAEIVEQVR 160

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210
            A   L D           +P    +++N+V MGMGEPL N+  V +++   +A    GL
Sbjct: 161 AAARSLADGE---------VPGGPTRLTNVVFMGMGEPLANYKAVMETVRRLVAPTPDGL 211

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S R +T+ST G VP + ++  E I V LA+SLHA  ++LR+ LVP+N ++ ++  ID+
Sbjct: 212 GMSARNVTVSTVGMVPAMDKLANEGIPVTLALSLHAPDDELRSELVPVNTRWSVDEAIDS 271

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSP--RDALNLIKILKGIP-AKINLIPFNPWPGCEY 326
              Y      RR++ EY +++ +ND     D L      +G      N IP NP P   +
Sbjct: 272 AHRY-FEKTGRRVSIEYALIRDVNDHAWRADLLGEKLAARGTGWVHCNPIPLNPVPNSRW 330

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             SD +    F   ++  G  + +R  RG +I  ACGQL +
Sbjct: 331 TASDPQVEREFVARLRAHGIPTTVRDTRGSEIDGACGQLAA 371


>gi|15639062|ref|NP_218508.1| hypothetical protein TP0068 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025302|ref|YP_001933074.1| hypothetical protein TPASS_0068 [Treponema pallidum subsp. pallidum
           SS14]
 gi|81556505|sp|O83107|RLMN_TREPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829921|sp|B2S216|RLMN_TREPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|3322324|gb|AAC65061.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017877|gb|ACD70495.1| hypothetical protein TPASS_0068 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059484|gb|ADD72219.1| radical SAM enzyme, Cfr family [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 340

 Score =  162 bits (411), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 160/336 (47%), Gaps = 27/336 (8%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
           R R  Q+++WI   G  DF  MSD+S E R  L +   I    +       DGT K  + 
Sbjct: 24  RFRGVQVFRWIAA-GCTDFHAMSDLSSETRARLARACVISDTRVYTTLRDVDGTLKLGIE 82

Query: 92  FPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
              +       +E V + ++ SR T C+S QVGC + C+FC TG     RNL+A EI+ Q
Sbjct: 83  LKDK-----RRVEAVLLVDQVSRKTACLSCQVGCPMACAFCQTGQLGFARNLSASEIVEQ 137

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
            L     +G                   + N+V MGMGEP+ N D V +++ I S   G 
Sbjct: 138 FLHLERCVG------------------TLDNVVFMGMGEPMLNLDAVCRAIEILSHPQGR 179

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S++RIT+STSG    I  + +  + V LA+SL   +  LR  L+P      L  L  A
Sbjct: 180 DLSEKRITISTSGHCRGIYSLADRALQVRLAVSLTTANAPLRARLMPRAAHDSLAKLKSA 239

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            R++   S  +R+T E  +++G+N S R A  +I    G+   +NLIP+NP     +   
Sbjct: 240 IRYFNEKSG-KRVTLELALMRGVNTSERHAQEVIDFAHGLNVHVNLIPWNPVASIHFETP 298

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            + ++  F   + R+      R  RG  I  ACGQL
Sbjct: 299 REVEVAHFEALLMRARIPVTRRYQRGNGIGGACGQL 334


>gi|315281048|ref|ZP_07869771.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii
           FSL S4-120]
 gi|313615305|gb|EFR88727.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii
           FSL S4-120]
          Length = 235

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 132/206 (64%), Gaps = 7/206 (3%)

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIG 236
           ++S++V+MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  
Sbjct: 22  RVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQ 81

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V LAISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N RRITFEY+MLKG+ND  
Sbjct: 82  VNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHK 140

Query: 297 RDALNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           ++AL L  +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR  
Sbjct: 141 KEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRRE 200

Query: 354 RGLDILAACGQLKSLSKRIPKVPRQE 379
            G DI AACGQL+  SK+I +V  +E
Sbjct: 201 HGTDIDAACGQLR--SKQIKRVGVRE 224


>gi|255024245|ref|ZP_05296231.1| hypothetical protein LmonocyFSL_13899 [Listeria monocytogenes FSL
           J1-208]
          Length = 220

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 132/206 (64%), Gaps = 7/206 (3%)

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIG 236
           ++S++V+MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  
Sbjct: 7   RVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQ 66

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V LAISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N RRITFEY+MLKG+ND  
Sbjct: 67  VNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHK 125

Query: 297 RDALNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           ++AL L  +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR  
Sbjct: 126 KEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRRE 185

Query: 354 RGLDILAACGQLKSLSKRIPKVPRQE 379
            G DI AACGQL+  SK+I +V  +E
Sbjct: 186 HGTDIDAACGQLR--SKQIKRVGVRE 209


>gi|290968497|ref|ZP_06560036.1| radical SAM enzyme, Cfr family [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781493|gb|EFD94082.1| radical SAM enzyme, Cfr family [Megasphaera genomosp. type_1 str.
           28L]
          Length = 345

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 178/361 (49%), Gaps = 29/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           SL+     EL++ L    I     + R  QI+ ++Y + I  ++ M  + ++ R  L   
Sbjct: 3   SLLDFTLPELQQFLEAHSIK----KFRAKQIFHYVYKQNITVWEDMVQLPKQDRQKLQNL 58

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I  P IV    S +G T K L++     +     +ETV +      ++C+SSQVGC++
Sbjct: 59  LEIYIPPIVSRLDSANGETVKLLVQ-----LADGQTVETVLMRHNYGNSICLSSQVGCAV 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +     VRNLT  E+  Q+L  R                   V   + ++V+MG
Sbjct: 114 NCLFCASAKNGFVRNLTMGEMQAQLLAFRRY-----------------VTTDLHSVVLMG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N+DNV + L    ++       R +T+ST+G VP I ++ +E I V LA+SLHA
Sbjct: 157 TGEPLLNYDNVLRFLRTIHEAYSFYLGYRNMTISTAGIVPQIYKLAQEGIPVNLAVSLHA 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  ++PI   Y  E ++ A  HY  ++  R++TFEY++++ +  +P  A  L   
Sbjct: 217 SNHELRRKIMPIADTYAWEDIVRAAFHYFAVT-GRKVTFEYILIRDLTCTPACAEELASR 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +      IN IP N            +++  F + +K+   S  +R   G +I AACGQL
Sbjct: 276 MAHKNVLINAIPINDNYDVGLRRPTLREMQAFVKILKKHHISVTLRREMGSEIQAACGQL 335

Query: 366 K 366
           +
Sbjct: 336 R 336


>gi|184200284|ref|YP_001854491.1| hypothetical protein KRH_06380 [Kocuria rhizophila DC2201]
 gi|205829780|sp|B2GJ15|RLMN_KOCRD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|183580514|dbj|BAG28985.1| putative rRNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 382

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/271 (36%), Positives = 146/271 (53%), Gaps = 13/271 (4%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +    R T+C+SSQ GC + C FC TG   L RNL+A EI+ QV+     L D  
Sbjct: 117 VESVLMRYDKRVTMCISSQAGCGMNCPFCATGQSGLTRNLSAAEIVDQVVQGVRALRDG- 175

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220
              D E        +++SNIV MGMGE L N+     ++   I     GL  S R +T+S
Sbjct: 176 AVGDPE-----EAPQRVSNIVFMGMGEALANYKATMGAVHRIIDPSPEGLGISARGLTMS 230

Query: 221 TSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T G VP I +   E++ + LA+SLHA  ++LR+ L+PIN ++ ++  +DA R Y   +  
Sbjct: 231 TVGLVPGIRKFTLEKLPITLALSLHAPDDELRDELIPINTRWKVDEALDAARDYYD-ATG 289

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
           RR++ EY +++ IND    A  L + L    G    +N IP NP PG ++  S       
Sbjct: 290 RRVSIEYALIRDINDQGWRADLLGEKLNKRGGGWVHVNPIPLNPTPGSKWTASRPGVEQN 349

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           F E ++  G  + +R  RG DI  ACGQL +
Sbjct: 350 FVERLRAHGIPTTVRDTRGSDIDGACGQLAT 380


>gi|302810701|ref|XP_002987041.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii]
 gi|300145206|gb|EFJ11884.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii]
          Length = 374

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 180/369 (48%), Gaps = 44/369 (11%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
           G+++ EL+    + GI   HV      IW+ +          +  +   +  LL   F  
Sbjct: 10  GILKAELQ----RHGIKPLHVYT----IWRHVMDHPNAALHQVPGLPGALYPLLRTRFKA 61

Query: 71  IYPEIVDEKISCDGTR-KWLLRFPA---------RCIGGPVEIETVYIPEKSRGTLCVSS 120
           +   +     S +GT  K LL+  +         R  GG  +      P   R TLCVSS
Sbjct: 62  LTSTLAAHSTSANGTTTKLLLQLQSGQSVETVIMRHHGGAGKYAGGPRPGSDRATLCVSS 121

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + CSFC TGT   V NLTA EI+ Q + A  +                     I 
Sbjct: 122 QVGCKMGCSFCATGTMGFVANLTAGEIVEQYVHASRM-------------------SPIR 162

Query: 181 NIVMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
           NIV MGMGEPL N+++V +++ ++     GLS S  RIT+ST G VP I  V  ++ GV 
Sbjct: 163 NIVFMGMGEPLNNYNSVVQAVQTLTGRCFGLSPS--RITISTVGIVPRILSVAGDLPGVN 220

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA +  LR  +VP +R + L+ L+ A   Y   SN R +  EYVML+ +NDS +D
Sbjct: 221 LALSLHAPTQALRCQIVPASRAFTLDKLMAAVDAYQASSN-RTLFIEYVMLQDVNDSSQD 279

Query: 299 ALNLIKILKGIPAKINLIPFN-PWPGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGL 356
           A  L  +L+     +NLIP+N  +   +Y  +    +  F + ++   G  + +R   G 
Sbjct: 280 ARQLGCLLRDRKVVLNLIPYNHTFVVGDYRATPADRVHHFQKIVREEFGIRTTVRQEMGQ 339

Query: 357 DILAACGQL 365
           DI  ACGQL
Sbjct: 340 DIDGACGQL 348


>gi|269955985|ref|YP_003325774.1| radical SAM enzyme, Cfr family [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304666|gb|ACZ30216.1| radical SAM enzyme, Cfr family [Xylanimonas cellulosilytica DSM
           15894]
          Length = 389

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/274 (38%), Positives = 149/274 (54%), Gaps = 22/274 (8%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSL-LGD 160
           IE+V +    R TLC+SSQVGC + C FC TG     RNL+A E+L QV LA RSL LG+
Sbjct: 122 IESVLMRYPRRSTLCISSQVGCGMACPFCATGQLGFTRNLSAAEMLEQVRLAMRSLALGE 181

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRIT 218
            PG              +++N+V MG GE L N+  +   +   +A    G   S R IT
Sbjct: 182 IPGGPT-----------RLNNLVFMGEGEGLINYRAIMTCIRTLVADAPEGFGMSARNIT 230

Query: 219 LSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
           +ST G VP + ++  E + + LA+SLHA  +DLR+ LVPIN ++ ++  +DA R Y   +
Sbjct: 231 VSTVGLVPGMKKLAAEGLPLTLALSLHAPDDDLRSELVPINTRFSVDEALDAARAY-FEA 289

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKIL----KGIPAKINLIPFNPWPGCEYLCSDQKD 333
             RR++ EY ++K +ND    A  L   L    KG    +N IP NP PG  +  S++  
Sbjct: 290 TGRRVSIEYALIKDMNDHAWRADLLGTKLNARGKGW-VHVNPIPLNPTPGSIWTASERAV 348

Query: 334 IVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
              F   ++  G  + +R  RG DI  ACGQL +
Sbjct: 349 EDEFVARLRGHGIPTTVRDTRGSDIDGACGQLAA 382


>gi|91977329|ref|YP_569988.1| hypothetical protein RPD_2859 [Rhodopseudomonas palustris BisB5]
 gi|123721790|sp|Q136A2|Y2859_RHOPS RecName: Full=Probable RNA methyltransferase RPD_2859
 gi|91683785|gb|ABE40087.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 359

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 144/264 (54%), Gaps = 23/264 (8%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V I      T C+SSQVGC+  C FC +G   L+RNL A EI+ QV+          
Sbjct: 98  VESVLIRRFDGHTACISSQVGCAFACRFCASGQAGLMRNLEAGEIVEQVV---------- 147

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                       +G K++ IV MG+GEPL N+  V K++ I  D  G++F    ITLST 
Sbjct: 148 -----------RLGPKVNRIVFMGIGEPLNNYQQVLKAIRILRDRQGMNFPTTGITLSTI 196

Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G    + ++ EE + + L ISLHA + ++R+ L+P  RK+PL  +++    +    N R 
Sbjct: 197 GIPKALKQLREEHLAINLTISLHATTQEVRDRLIPGARKHPLGEVVERACAWARRHN-RP 255

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           +TF Y++L GINDS  DA  L  +L+  PA++NL+ +NP  G     +  + +  F   +
Sbjct: 256 VTFAYLVLPGINDSIADARRLAAMLRDSPARVNLMRWNPVDGVGLQRTPDRSLAHFRTTL 315

Query: 342 KRSGYSSPIRTPRGLDILAACGQL 365
           + +     +R  +G DI AACGQL
Sbjct: 316 ENALVPVVVRDTQGRDISAACGQL 339


>gi|313888523|ref|ZP_07822190.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845552|gb|EFR32946.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 333

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 102/285 (35%), Positives = 148/285 (51%), Gaps = 24/285 (8%)

Query: 83  DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142
           D TRK L R     +     IE V +  K   + CVS+QVGC + C FC +    L+RNL
Sbjct: 66  DETRKMLFRLKDGNL-----IEGVLMEYKHGYSQCVSTQVGCRMGCDFCASTKSGLLRNL 120

Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202
           +A E+L QV              +IE         KISN ++MG GEPL NFD V + + 
Sbjct: 121 SAGEMLGQVY-------------EIEN----KYNIKISNFILMGSGEPLDNFDEVIRFIK 163

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKY 261
           +  D  G + S R IT+ST G    I  + +  + + LA+SLH  ++  R++L+PINR++
Sbjct: 164 LLHDEKGHNTSYRNITISTCGVADKIYDLADLNLPINLAVSLHQTNDKDRSVLMPINRRF 223

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321
            L  L  +  +Y   +N  RITFEY M+K  ND  ++   L    K +   INLIP NP 
Sbjct: 224 NLVELKKSLEYYVKKTN-NRITFEYTMIKNQNDGIKNIDELYNFAKNLKCHINLIPLNPI 282

Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
              +     + +I  F   +++ G++  IR   G DI A+CGQL+
Sbjct: 283 EEFDEKRPSKAEINDFKNKLEKKGFNVTIRRELGSDISASCGQLR 327


>gi|255994247|ref|ZP_05427382.1| radical SAM enzyme, Cfr family [Eubacterium saphenum ATCC 49989]
 gi|255993915|gb|EEU04004.1| radical SAM enzyme, Cfr family [Eubacterium saphenum ATCC 49989]
          Length = 342

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 186/365 (50%), Gaps = 35/365 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +SL GM  +E+E  +L +G        R  QI + +   G+     +  IS++ R  L+ 
Sbjct: 2   KSLAGMNLKEIESVVLSLGEKA----YRAKQILEAVN-NGVDSIDKIHTISKDFRAKLSN 56

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            ++I    +  + +S  DG+ K+LL+       G   IE + +  K   +LC+SSQ GC 
Sbjct: 57  KYTISSITVEKKLVSKRDGSIKYLLKTS----DGKF-IEAMSMVYKHGVSLCISSQAGCR 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G + L RNL+A E++ QVL+ +                      KIS IV+M
Sbjct: 112 MGCTFCSSGKEGLERNLSAFEMIEQVLILKRGFD------------------KISGIVVM 153

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           G GEP  N+D +KK L   ++   L   KR IT+ST G    I +  ++   + LA SLH
Sbjct: 154 GTGEPFDNYDELKKFLKRITNEEFLRIGKRHITVSTCGIEEGIKKFSKDFRSINLAFSLH 213

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A SND+R  ++P N K  ++ +I     +  ++  RR+TFEY+++KG+NDS  +   L +
Sbjct: 214 AASNDIRKKIMPGN-KLSVDDIIGLASEHAKITR-RRVTFEYILIKGVNDSMAECELLCR 271

Query: 305 ILKGIPAKINLIPFN--PWPGCEYLCS-DQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
            LKGI   +NLI  N   + G     S D K +  +   +++      IR   G DI  A
Sbjct: 272 KLKGINCLVNLIRLNGSSYEGDNRFSSPDMKTVKQWQNELEKRHIQVTIRRTIGEDIQGA 331

Query: 362 CGQLK 366
           CGQL+
Sbjct: 332 CGQLR 336


>gi|302807670|ref|XP_002985529.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii]
 gi|300146735|gb|EFJ13403.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii]
          Length = 374

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 180/369 (48%), Gaps = 44/369 (11%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
           G+++ EL+    + GI   HV      IW+ +          +  +   +  LL   F  
Sbjct: 10  GILKAELQ----RHGIKPLHVYT----IWRHVMDHPNAALHQVPGLPGALYPLLRTRFKA 61

Query: 71  IYPEIVDEKISCDG-TRKWLLRFPA---------RCIGGPVEIETVYIPEKSRGTLCVSS 120
           +   +     S +G T K LL+  +         R  GG  +      P   R TLCVSS
Sbjct: 62  LTSTLAAHSTSANGSTTKLLLQLQSGQSVETVIMRHHGGAGKYAGGPRPGSDRATLCVSS 121

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + CSFC TGT   V NLTA EI+ Q + A  +                     I 
Sbjct: 122 QVGCKMGCSFCATGTMGFVANLTAGEIVEQYVHASRM-------------------SPIR 162

Query: 181 NIVMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVM 238
           NIV MGMGEPL N+++V +++ ++     GLS S  RIT+ST G VP I +  G+  GV 
Sbjct: 163 NIVFMGMGEPLNNYNSVVQAVQTLTGRCFGLSPS--RITISTVGIVPRILSLAGDLPGVN 220

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA +  LR  +VP +R + L+ L+ A   Y   SN R +  EYVML+ +NDS +D
Sbjct: 221 LALSLHAPTQALRCQIVPASRAFTLDKLMAAVDAYQASSN-RTLFIEYVMLQDVNDSSQD 279

Query: 299 ALNLIKILKGIPAKINLIPFN-PWPGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGL 356
           A  L  +L+     +NLIP+N  +   +Y  +    +  F + ++   G  + +R   G 
Sbjct: 280 ARQLGCLLRDRKVVLNLIPYNHTFVVGDYRATPADRVHHFQKIVREEFGIRTTVRQEMGQ 339

Query: 357 DILAACGQL 365
           DI  ACGQL
Sbjct: 340 DIDGACGQL 348


>gi|282882048|ref|ZP_06290689.1| radical SAM enzyme, Cfr family [Peptoniphilus lacrimalis 315-B]
 gi|281298078|gb|EFA90533.1| radical SAM enzyme, Cfr family [Peptoniphilus lacrimalis 315-B]
          Length = 348

 Score =  159 bits (401), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 176/361 (48%), Gaps = 31/361 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  M  +EL++ L      +     R +Q++ + +     D +  +     ++ L N   
Sbjct: 3   LNSMYLDELKDYL----SSKSEKSFRANQLYTFFHKNKRWDIENSNLSKSTLKILQNDEI 58

Query: 69  SII-YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           + I   +I   K+  D T+K+L       +     IE V +      + C+S+QVGC + 
Sbjct: 59  NTIKILKIFQSKL--DDTKKFLFTLDDSNV-----IEGVLMKYSFGYSQCISTQVGCRMG 111

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +    L RNLT  E+L QV +  +  G                   + N ++MG 
Sbjct: 112 CAFCASTKDGLFRNLTPAEMLNQVYIVENYFG-----------------INVKNFILMGS 154

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAV 246
           GEPL NFDNV K L I     G + S R IT+ST G V  I + +   + + LA+SLH  
Sbjct: 155 GEPLDNFDNVIKFLKILHSKEGHNTSYRNITISTCGVVDGIYKLIDSALPINLAVSLHQT 214

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++  R+ ++PINRKY L  L  A   Y  L    RITFEY ++KG ND+ ++   L ++ 
Sbjct: 215 NDLERSKIMPINRKYNLNKLKKALEDY-NLKTKNRITFEYTLIKGKNDTLKNVNELKEMF 273

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +   INLIP NP         +++DI  F   ++ + ++  +R   G DI A+CGQL+
Sbjct: 274 QNLFCHINLIPLNPIEEYNEQRPNRQDINKFKRLLEDASFNVTVRRELGSDIDASCGQLR 333

Query: 367 S 367
           +
Sbjct: 334 A 334


>gi|149200056|ref|ZP_01877081.1| YloN [Lentisphaera araneosa HTCC2155]
 gi|149136814|gb|EDM25242.1| YloN [Lentisphaera araneosa HTCC2155]
          Length = 345

 Score =  159 bits (401), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 180/361 (49%), Gaps = 29/361 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M RE ++  + +  +P    + R  Q+ +  +      F  +++  +++R+ L +   ++
Sbjct: 1   MNRERIQTIVDEYKLP----KFRAKQLKEAFFEHHYSSFDQLTNFPKDLRNKLTEENQVL 56

Query: 72  YPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYI-PEKSRGTLCVSSQVGCSLTCS 129
              +     S D  T K LL      +   ++IE+V + P+    T C+SSQVGC++ CS
Sbjct: 57  CLTVNKVFASSDQVTYKALLE-----LHDGLKIESVLMSPKPGLWTACISSQVGCAMKCS 111

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TGT  L RNLT+EEI  QVL  R     F    DI+         +++N+V MGMGE
Sbjct: 112 FCATGTMGLTRNLTSEEISDQVLFWRQ----FIAKNDID-------TDRLNNVVYMGMGE 160

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSN 248
           PL N   V  S+   +         R I++STSG +  +  + E+   V LA+SLHA  +
Sbjct: 161 PLHNTKEVFSSIEELTAEDSFKIGSRHISVSTSGLLKGVKEMAEKFPQVNLALSLHAAKD 220

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           +LR+ ++PIN+ + LE +      Y   S  R++  EYV+L+G N+    A+ L K LK 
Sbjct: 221 ELRSSIMPINKAFDLEKIRTCLDEYID-STHRKVFIEYVLLEGENNELSHAVELSKFLKS 279

Query: 309 IP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +        NLI +N     E+  S ++    F   +K  G S  IR   G DI  ACGQ
Sbjct: 280 LKRPELTHTNLIVYNE-TDSEHKGSTKQKADQFRNHLKSKGLSVTIRKNLGRDIDGACGQ 338

Query: 365 L 365
           L
Sbjct: 339 L 339


>gi|304440677|ref|ZP_07400561.1| cfr family radical SAM enzyme [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370864|gb|EFM24486.1| cfr family radical SAM enzyme [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 342

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 174/355 (49%), Gaps = 36/355 (10%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII--Y 72
           EE++  + +IG      + R  Q++ +       D    S++ ++++ L  +   I   Y
Sbjct: 9   EEMKSYIEEIG----EKKFRAQQLFTFFNKNKKWDLNSSSNLPKDLKSLPVREIKIFEEY 64

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
              +DE      T K+L       +     IE V +  +   + C+S+QVGC + CSFC 
Sbjct: 65  HSKIDE------TVKFLFELNDGNL-----IEGVLLKYEHGYSQCISTQVGCRMGCSFCA 113

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           +     +RNLT  E+  Q+ L  + LG                   ISNIV+MG GEPL 
Sbjct: 114 STKGGRIRNLTPSEMAGQIYLVENKLG-----------------INISNIVLMGSGEPLD 156

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251
           N++NV K   I  D  G + S R IT+S+ G VP I  + + +  + LAISLH+  ++ R
Sbjct: 157 NYENVIKFFDIIHDENGKNLSNRSITISSCGIVPRIYDLEKLKKPINLAISLHSPFDEDR 216

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             ++PI  +Y +E ++ A ++Y       RIT EY ++K +ND   DA  LI+I K I  
Sbjct: 217 KKIMPITNRYSIEEVLAASKYYSE-GTGTRITLEYTLIKDVNDREIDADELIRITKDIKV 275

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            +NLIP NP        +  K    F   + + G ++ IR   G DI A+CGQL+
Sbjct: 276 HVNLIPLNPIKEYNKGKTSPKGAKKFQNMLLKGGINATIRRELGSDISASCGQLR 330


>gi|300814530|ref|ZP_07094786.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511357|gb|EFK38601.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 348

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 175/361 (48%), Gaps = 31/361 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  M  +EL++ L   G        R +Q++ + +     D +  +     ++ + N   
Sbjct: 3   LNSMYLDELKDYLSSKG----EKSFRANQLYTFFHKNKRWDIENSNLSKSTLKIIQNDEI 58

Query: 69  SII-YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           + I   +I   K+  D T+K+L       +     IE V +      + C+S+QVGC + 
Sbjct: 59  NTIKILKIFQSKL--DTTKKFLFTLDDSNV-----IEGVLMKYNFGYSQCISTQVGCRMG 111

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +    L RNLT  E+L QV +  +  G                   + N ++MG 
Sbjct: 112 CAFCASTKDGLFRNLTPAEMLNQVYIVENYFG-----------------INVKNFILMGS 154

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAV 246
           GEPL NFDNV K L I     G + S R IT+ST G V  I + +   + + LA+SLH  
Sbjct: 155 GEPLDNFDNVIKFLKILHSKEGHNTSYRNITISTCGVVDGIYKLIDSALPINLAVSLHQT 214

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++  R+ ++PINRKY L  L  A   Y  L    RITFEY ++KG ND+ ++   L  + 
Sbjct: 215 NDLERSKIMPINRKYNLNKLKKALEDY-NLKTKNRITFEYTLIKGKNDTLKNVNELKDMF 273

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +   INLIP NP         +++DI  F   ++ + ++  +R   G DI A+CGQL+
Sbjct: 274 QNLFCHINLIPLNPIEEYNEQRPNRQDINKFKRLLEDASFNVTVRRELGSDIDASCGQLR 333

Query: 367 S 367
           +
Sbjct: 334 A 334


>gi|182412196|ref|YP_001817262.1| radical SAM protein [Opitutus terrae PB90-1]
 gi|205829633|sp|B1ZQZ5|RLMN1_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 1;
           AltName: Full=23S rRNA m2A2503 methyltransferase 1
 gi|177839410|gb|ACB73662.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1]
          Length = 355

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 149/300 (49%), Gaps = 27/300 (9%)

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVGCSLTCSFCY 132
           +   +++ DGT K LLR     +     +E V +P+    R   C+SSQVGC++ C FC 
Sbjct: 67  LAARQVAADGTTKLLLR-----LADGRTVEAVLMPDYRADRAAGCLSSQVGCAMGCDFCA 121

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           T      RNLTA E++ Q L  R                  S GRK+  +V MGMGEPL 
Sbjct: 122 TAQSGFERNLTAGEMVEQFLALRR--------------EAASAGRKLQTVVFMGMGEPLL 167

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLR 251
           N D V  ++   +D+       R++T+ST G VP I A    ++G+ LA+SLHA  +  R
Sbjct: 168 NLDAVLTAVRRIADNTYGGLGWRQVTVSTVGLVPGIDALTAADLGINLAVSLHAPDDATR 227

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             L+P  R++ +  ++ A   +   S  R +  +Y +LKG+NDS   A  L  ++     
Sbjct: 228 AALLPAGRRFAIADILAAVDRFQA-SRGRPVIIQYCLLKGVNDSAAHARMLAAVIGSRRM 286

Query: 312 KINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +NL+ +NP      G  Y  S  +    F   ++  G  + +R  RG DI AACGQL++
Sbjct: 287 HVNLLHYNPTGLSLRGVRYEPSGDEAAAQFLAELRARGVVTHLRRSRGPDIDAACGQLRA 346


>gi|254442339|ref|ZP_05055815.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
 gi|198256647|gb|EDY80955.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
          Length = 342

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/364 (32%), Positives = 175/364 (48%), Gaps = 39/364 (10%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN--QHFSIIY 72
           ++LE+ L   G   R +R    + ++ ++    R+F  + ++  +     N  + F   Y
Sbjct: 9   KKLEKHLRHNGFGARELR----RTYRMLF----REFTPLENLGWDDAFTANFKEQFETSY 60

Query: 73  PEIV---DEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTC 128
             +V   D KI  DG  K L   P        +IETV +     R ++CVSSQVGC+  C
Sbjct: 61  LTLVSRIDSKI--DGATKLLFETP-----DGKKIETVILRIATGRTSICVSSQVGCTEKC 113

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNL +EEIL QV+ A              G ++ S  R + NIV MGMG
Sbjct: 114 RFCATGELGFFRNLKSEEILDQVVQA--------------GRILASEDRSLRNIVFMGMG 159

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
           EPL N+DN+  ++          F  +RIT+S+ G    I +  +    V LA+SL+  +
Sbjct: 160 EPLRNYDNLVAAMDQLLSEHVFKFVPKRITVSSLGIPELIVKFAQRFPQVSLALSLNGSN 219

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +  R+ ++PIN +YP+  L         +     +  EY+M K +NDS  DA  +   L+
Sbjct: 220 DAARSEVMPINNRYPMADLRSMLEQLETIREG-IVMIEYIMFKDLNDSVEDAAKVAAFLR 278

Query: 308 GIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           G+   INLIP+NP       +L S  + I  F   ++  GY    R   G DI AACGQL
Sbjct: 279 GLAVHINLIPYNPDYSLNKSFLPSSIETIEAFKNHLQSEGYKVTRRFSLGQDIAAACGQL 338

Query: 366 KSLS 369
            + S
Sbjct: 339 ANKS 342


>gi|256824969|ref|YP_003148929.1| ribosomal RNA large subunit methyltransferase N [Kytococcus
           sedentarius DSM 20547]
 gi|256688362|gb|ACV06164.1| radical SAM enzyme, Cfr family [Kytococcus sedentarius DSM 20547]
          Length = 426

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/396 (31%), Positives = 186/396 (46%), Gaps = 62/396 (15%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE-----VRHLLNQHFSIIY 72
           ++A+   G P      R +Q+ K  + R   +   M+D+ +      VR L+ Q  + + 
Sbjct: 40  KQAVTDAGWPA----FRANQLSKHYFERYTDEPAAMTDLPKAGREEMVRGLMPQLLTPVS 95

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
               D+      T K L R     +     +E+V +   +R TLC+SSQ GC + C FC 
Sbjct: 96  VMRADDG----ATVKTLWRLHDGAL-----VESVLMRYPNRVTLCLSSQAGCGMNCPFCA 146

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGD--FPGCED----IEGMV-------IPSVG--- 176
           TG Q L RNL+  EI+ Q++ A  +L D   PG        EG V        PS+    
Sbjct: 147 TGQQGLTRNLSTAEIVGQLVAANRMLNDPEAPGLAPPPALAEGQVELGENDADPSLDAGA 206

Query: 177 -----------------RKISNIVMMGMGEPLCNF----DNVKKSLSIASDSMGLSFSKR 215
                             ++ N+V MGMGE L N+    D V++ +  A    GL  S R
Sbjct: 207 DEVEDASLDTPLAAGGPHRVHNVVFMGMGEALANYRKAVDAVRRMVDPAP--AGLGMSAR 264

Query: 216 RITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
            IT+ST G VP I +   E +   LA+SLHA  ++LR+ LVPIN+++ ++  +DA   Y 
Sbjct: 265 GITMSTVGLVPAIDKFAAEGVAATLALSLHAPDDELRDELVPINKRWKVDEALDAAYRY- 323

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQ 331
             +  RR++ EY +++ +ND    A  L + L         +N IP NP PG ++  S  
Sbjct: 324 FETTGRRVSIEYALIRDMNDQAWRADLLAEKLNARGRGWVHVNPIPLNPTPGSKWTASRP 383

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
                F E ++  G  + +R  RG DI  ACGQL +
Sbjct: 384 GVEQQFVERLRAGGIPTTVRDTRGSDIDGACGQLAA 419


>gi|240147073|ref|ZP_04745674.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
 gi|257200758|gb|EEU99042.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
          Length = 265

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 158/291 (54%), Gaps = 33/291 (11%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  +  M  EEL+  +  IG        R  Q+++W++ +    F  M+++S+ ++  L
Sbjct: 4   EKTDIKSMNLEELKSYMESIG----EKPFRAKQLYQWMHEKQAASFDEMTNLSKSLQEKL 59

Query: 65  NQ--HFSIIYPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            +  HF  +  E V   KI  DGTRK+L         G V IE+V +  K   ++C+SSQ
Sbjct: 60  KKECHFVSLKQEAVQVSKI--DGTRKYLFALD----DGNV-IESVLMRYKHGNSVCISSQ 112

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC +    LVR LT  E+L Q+                   +    G +++N
Sbjct: 113 VGCRMGCRFCASTLDGLVRGLTPSEMLDQIY-----------------RITRDTGERVAN 155

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240
           +V+MG GEP+ NFDN+ K + + +D  GL+ S+R +T+ST G VP +  + + ++ + LA
Sbjct: 156 VVVMGTGEPMDNFDNLLKFIELLTDENGLNISQRNVTVSTCGIVPKMRELADKKLQITLA 215

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           +SLHA S + R  L+PI  KY +  +I+ACR+Y      RR+TFEY ++ G
Sbjct: 216 LSLHASSQEKRLELMPIANKYEIHEVIEACRYYFE-QTGRRVTFEYSLVGG 265


>gi|32474560|ref|NP_867554.1| Fe-S-cluster redox enzyme [Rhodopirellula baltica SH 1]
 gi|81660696|sp|Q7UPG1|Y6963_RHOBA RecName: Full=Probable RNA methyltransferase RB6963
 gi|32445099|emb|CAD75101.1| conserved hypothetical protein-putative Fe-S-cluster redox enzyme
           [Rhodopirellula baltica SH 1]
          Length = 379

 Score =  156 bits (395), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 17/255 (6%)

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R TLCVSSQ+GC+  C FC TG   + +NL  EEIL QV+ A              G ++
Sbjct: 99  RTTLCVSSQIGCAAACDFCATGKMGIAKNLATEEILDQVVQA--------------GQIL 144

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
               R++SNIV MGMGEPL N  NV +++ + +     + S   + +ST G    + R+ 
Sbjct: 145 RGEDRRLSNIVFMGMGEPLHNEVNVTEAIELLTAPDHFARSPSTVLVSTVGVPAGMLRLA 204

Query: 233 EEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           +    + LA+SLH+     R  ++P+ +K  L  L DA      + + R    EY+ML+ 
Sbjct: 205 KRFPNLNLALSLHSADQTTREKIIPLGKKASLAQLHDAIHEIQTIQD-REFMIEYLMLRD 263

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIV-TFSECIKRSGYSSPI 350
           +NDS +DA  LI  +  +   +NLIP+N      +L +  + ++ +F++ +K SG  + +
Sbjct: 264 VNDSAKDADRLIDWIGDLRVHVNLIPYNTIEASPHLHASSRPVIESFADILKASGLKTTV 323

Query: 351 RTPRGLDILAACGQL 365
           R   G DI AACGQL
Sbjct: 324 RYSLGNDIEAACGQL 338


>gi|153007216|ref|YP_001381541.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter
           sp. Fw109-5]
 gi|205829649|sp|A7HIL1|Y4379_ANADF RecName: Full=Probable RNA methyltransferase Anae109_4379
 gi|152030789|gb|ABS28557.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 336

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 149/300 (49%), Gaps = 33/300 (11%)

Query: 79  KISC----DGTRKWLLRFPARCIGGPVEIETVYIPE-KSRGTLCVSSQVGCSLTCSFCYT 133
           +++C    DG R++LL      +G    +E V IP   +  T+C+SSQ GC+L CSFC T
Sbjct: 62  RVACTDAKDGFRRYLLE-----LGDGARVEAVRIPLFDTHHTVCLSSQAGCALGCSFCAT 116

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   L R+L A EI+ Q+L  R+                    R I+ +V MG GEP  N
Sbjct: 117 GALGLARSLRAWEIVAQLLHVRA-----------------DSTRPITGVVFMGQGEPFLN 159

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRN 252
           +D V ++     D  G     RRI++ST+G VP I R   E     L +SL+A     R 
Sbjct: 160 YDAVLEAAYTLCDPAGGRIDGRRISISTAGVVPMIRRYTAEGHKFRLCVSLNAAIPWKRR 219

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            L+PI   +PL+ L+DA R +       R+T EYVM+ G+N    DA  L ++L GIP +
Sbjct: 220 ALMPIEEGFPLDELVDAVREHAAQRG--RVTLEYVMIAGVNTGDEDAAALGRLLAGIPVR 277

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAACGQLKSLSK 370
           +N I  N   G  +   D+ +   F + + R     PI  R   G D  AACG L S ++
Sbjct: 278 LNPIAVNDATG-RHRPPDEAEWNAFRDALARELPGQPIVRRYSGGQDEHAACGMLSSRTR 336


>gi|327543394|gb|EGF29819.1| radical SAM domain protein [Rhodopirellula baltica WH47]
          Length = 379

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 17/255 (6%)

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R TLCVSSQ+GC+  C FC TG   + +NL  EEIL QV+ A              G ++
Sbjct: 99  RTTLCVSSQIGCAAACDFCATGKMGIAKNLATEEILDQVVQA--------------GQIL 144

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
               R++SNIV MGMGEPL N  NV +++ + + S   + S   + +ST G    + R+ 
Sbjct: 145 RGEDRRLSNIVFMGMGEPLHNEVNVTEAIELLTASDHFARSPSTVLVSTVGVPAGMLRLA 204

Query: 233 EEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           +    + LA+SLH+     R  ++P+ +K  L  L D       + + R    EY+ML+ 
Sbjct: 205 KRFPNLNLALSLHSADQTTREKIIPLGKKASLTQLHDTILEIQTIQD-REFMIEYLMLRD 263

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIV-TFSECIKRSGYSSPI 350
           +NDS +DA  LI  +  +   +NLIP+N      +L +  + ++ +F++ +K SG  + +
Sbjct: 264 VNDSAKDADRLIDWIGDLRVHVNLIPYNTIEASPHLHASSRPVIESFADILKASGLKTTV 323

Query: 351 RTPRGLDILAACGQL 365
           R   G DI AACGQL
Sbjct: 324 RYSLGNDIEAACGQL 338


>gi|87311004|ref|ZP_01093129.1| hypothetical protein DSM3645_15540 [Blastopirellula marina DSM
           3645]
 gi|87286294|gb|EAQ78203.1| hypothetical protein DSM3645_15540 [Blastopirellula marina DSM
           3645]
          Length = 361

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/286 (35%), Positives = 140/286 (48%), Gaps = 23/286 (8%)

Query: 83  DGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
           DG  K L R     +     +E+V +     R  LCVSSQVGC+  C FC TG   + R+
Sbjct: 81  DGASKLLFRTDDGLL-----LESVILRVATGRTALCVSSQVGCAANCDFCATGKMGIARS 135

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L+A +IL QV+ A  LL                 GRK+ NIV MGMGEP  N   V ++L
Sbjct: 136 LSAPQILDQVVQANQLL--------------KPEGRKVRNIVFMGMGEPFHNTAAVHETL 181

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRK 260
                  G   S RR  +ST G    +     +   V LA+SLH+     R  ++P+  K
Sbjct: 182 EKLVSPHGFDQSPRRTLVSTVGLPSAMIAFARKFPKVNLALSLHSAIQSRRTEIIPLAAK 241

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           + L+ L  A      +   + I  EY+ML+GIND P D   L   L+G+P  INLIP+N 
Sbjct: 242 FDLKELRAALDQVAAVQQ-QSIMIEYLMLRGINDGPEDRAALADYLRGLPVHINLIPYNR 300

Query: 321 WPGCEYL-CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                +L  + ++D   F   ++  GY+  IR   G D+ AACGQL
Sbjct: 301 VDAAPHLEGTSKEDREAFGAALRGEGYTVTIRYSLGADVDAACGQL 346


>gi|219558900|ref|ZP_03537976.1| hypothetical protein MtubT1_16977 [Mycobacterium tuberculosis T17]
          Length = 238

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/249 (36%), Positives = 134/249 (53%), Gaps = 20/249 (8%)

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EIL QV    + L D               G ++SN+V M
Sbjct: 2   MACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 48

Query: 186 GMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           GMGEPL N+  V  ++    A    G   S R +T+ST G  P I  + +  +GV LA+S
Sbjct: 49  GMGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALS 108

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  + LR+ LVP+N ++ +   +DA R+Y  ++  RR++ EY +++ +ND P  A  L
Sbjct: 109 LHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTG-RRVSIEYALIRDVNDQPWRADLL 167

Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K L    G  A +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I 
Sbjct: 168 GKRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREIS 227

Query: 360 AACGQLKSL 368
           AACGQL ++
Sbjct: 228 AACGQLAAV 236


>gi|299535922|ref|ZP_07049242.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
           fusiformis ZC1]
 gi|298728674|gb|EFI69229.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
           fusiformis ZC1]
          Length = 286

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/269 (33%), Positives = 151/269 (56%), Gaps = 24/269 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           KES+  +   +LEE L + G        R +QI+ W+Y + ++ F+ MS++S+ +R  L 
Sbjct: 34  KESIYSLQPHQLEEWLTENG----EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGLREKLT 89

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F++     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC 
Sbjct: 90  ANFALSTLSTIIKQESKDGTIKFLFQ-----LQDGYSIETVLMRHEYGNSVCVTTQVGCR 144

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L R+L A EI+ QV+  +  L +              +G ++S+IV+M
Sbjct: 145 IGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTLDE--------------LGERVSHIVIM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
           G+GEP  N+D +   L + +   GL+   R IT+STSG VP I +   E++ +  A+SLH
Sbjct: 191 GIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFADEQLQINFAVSLH 250

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY 273
           A + + R  L+PI R Y LE L+DA R+Y
Sbjct: 251 APNQEARQKLMPIARAYKLEELMDAVRYY 279


>gi|266624063|ref|ZP_06116998.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
 gi|288864119|gb|EFC96417.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
          Length = 235

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 138/238 (57%), Gaps = 19/238 (7%)

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +    L RNL   E+L Q+   + L G+                 ++SN+V+MG GE
Sbjct: 1   FCASTLDGLERNLRPAEMLDQIYRIQYLTGE-----------------RVSNVVIMGSGE 43

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           P+ N+D+V K + + +D  GL+ S+R +TLST G VP I ++ +E + + LA+SLHA ++
Sbjct: 44  PMDNYDHVVKFIRLLTDEHGLNVSQRNVTLSTCGIVPGILKLADEGLAITLALSLHAPND 103

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           ++R  L+P+ + Y L  +++AC  Y      RR+TFEY ++ G+ND+  +A  L  ++K 
Sbjct: 104 EVRKTLMPVAKSYKLNDVLEACHTYFE-KTGRRLTFEYSLVAGVNDNLEEAAALAALIKD 162

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
               +NLIP NP    +Y+ SD+K I  F   ++++G +  IR   G DI  ACGQL+
Sbjct: 163 QQGHVNLIPVNPIKERDYVQSDRKAIEAFKNLLEKNGINVTIRREMGRDIHGACGQLR 220


>gi|255100607|ref|ZP_05329584.1| florfenicol/chloramphenicol resistance protein [Clostridium
           difficile QCD-63q42]
          Length = 416

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/341 (34%), Positives = 168/341 (49%), Gaps = 34/341 (9%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLR 91
           R  Q+   ++++GI  F+ M  + + +R  L + F  +++  + +  + S   T K L  
Sbjct: 20  RYKQLLDAVFLQGIMRFEDMKLLPKTLREKLVEQFGETVVEIKAIHHEKSMQ-TDKVLFE 78

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                 G  VE   ++  E    + C+SSQ GC   C FC TGT  L RNLT +EI  Q+
Sbjct: 79  LSD---GNRVETVGLFYKE-GWNSFCISSQSGCGFGCKFCATGTLGLRRNLTVDEITDQI 134

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L          GC              I++I  MGMGEP  N   V ++L   +      
Sbjct: 135 LYFMQ-----QGCS-------------INSISFMGMGEPFAN-PQVFEALHDLTAPELFG 175

Query: 212 FSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            S+RRIT+ST G VP I ++  E   V LA SLHA ++ LR  L+PI + YPL  ++D  
Sbjct: 176 LSQRRITISTIGIVPGIQKLTREYPQVNLAYSLHAPTDRLRETLMPITKTYPLGQVLDTL 235

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL----KGIP-AKINLIPFNPWPGCE 325
             +   +N R++   Y+MLK +NDS R A  L K+L    K +P   ++LIP+N     E
Sbjct: 236 DQHIRQTN-RKVFLAYIMLKDVNDSDRHAEQLTKLLFKHKKYLPLYHLDLIPYNQTTVTE 294

Query: 326 YLC-SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +  S    I  F   I  +G S  IRT  G DI AACGQL
Sbjct: 295 TMVPSSHTRIKAFCRIIHNAGISVNIRTQFGSDINAACGQL 335


>gi|15230899|ref|NP_188597.1| radical SAM domain-containing protein [Arabidopsis thaliana]
 gi|28393068|gb|AAO41968.1| unknown protein [Arabidopsis thaliana]
 gi|28827394|gb|AAO50541.1| unknown protein [Arabidopsis thaliana]
 gi|332642748|gb|AEE76269.1| radical SAM domain-containing protein [Arabidopsis thaliana]
          Length = 372

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 171/359 (47%), Gaps = 46/359 (12%)

Query: 37  QIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL------ 90
           QIWK++       +  +  +      LL+  F  +   +     S DGT   LL      
Sbjct: 28  QIWKYVIQNPDCVWDEIPSLPSAAYSLLHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQNG 87

Query: 91  --------RFPARC--IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140
                   R+  R   +GG         P   R TLC+SSQVGC + C+FC TGT     
Sbjct: 88  AFVEAVVMRYDTRLGMLGGKPR------PGGIRSTLCISSQVGCKMGCTFCATGTMGFKS 141

Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
           NLT+ EI+ Q++ A S + D                  I NIV MGMGEPL N++ V ++
Sbjct: 142 NLTSGEIVEQLVHA-SRIAD------------------IRNIVFMGMGEPLNNYNAVVEA 182

Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINR 259
           + +  +      S +RIT+ST G V  I ++  ++ GV LA+SLHA   ++R  ++P  R
Sbjct: 183 VRVMLNQ-PFQLSPKRITISTVGIVHAINKLHNDLPGVSLAVSLHAPVQEIRCQIMPAAR 241

Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
            +PL+ L+DA + +   S  ++I  EY+ML G+ND  + A  L ++LK     INLIPFN
Sbjct: 242 AFPLQKLMDALQTFQKNSQ-QKIFIEYIMLDGVNDQEQHAHLLGELLKTFQVVINLIPFN 300

Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYS--SPIRTPRGLDILAACGQLKSLSKRIPKVP 376
           P        +     V+  + I R  Y   + IR   G DI  ACGQL      I K P
Sbjct: 301 PIGSTSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKTP 359


>gi|205829721|sp|Q2IHD1|Y4229_ANADE RecName: Full=Probable RNA methyltransferase Adeh_4229
          Length = 338

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/298 (35%), Positives = 149/298 (50%), Gaps = 32/298 (10%)

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCY 132
           E VD K   DG RK+L   P       + +ETV IP   +   +C+SSQ GC+L C+FC 
Sbjct: 64  ESVDAK---DGFRKYLFELP-----DGLRVETVRIPLYDTHHVVCLSSQAGCALGCAFCA 115

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           T    L R+L + E++ Q+L  R+         D E        R I+ +V MG GEP  
Sbjct: 116 TAKLGLDRSLRSWEMVSQLLAVRA---------DSE--------RPITGVVFMGQGEPFL 158

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLR 251
           N+D V  +     D  G     RRI++ST+G VP I R   E     L ISL+A     R
Sbjct: 159 NYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNAAMPWKR 218

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             L+P+ + +PL+ L++A R +  L    R+T EYVM+ G+N    DA  L ++L GIP 
Sbjct: 219 RALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVGEEDAAALGRLLAGIPV 276

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAACGQLKS 367
           ++N I  N   G  Y   D+ +   F + + R    +P+  R   G D  AACG L S
Sbjct: 277 RLNPIAVNDASG-RYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQDEHAACGMLAS 333


>gi|86160645|ref|YP_467430.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85777156|gb|ABC83993.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 309

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 106/298 (35%), Positives = 149/298 (50%), Gaps = 32/298 (10%)

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCY 132
           E VD K   DG RK+L   P       + +ETV IP   +   +C+SSQ GC+L C+FC 
Sbjct: 35  ESVDAK---DGFRKYLFELP-----DGLRVETVRIPLYDTHHVVCLSSQAGCALGCAFCA 86

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           T    L R+L + E++ Q+L  R+         D E        R I+ +V MG GEP  
Sbjct: 87  TAKLGLDRSLRSWEMVSQLLAVRA---------DSE--------RPITGVVFMGQGEPFL 129

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLR 251
           N+D V  +     D  G     RRI++ST+G VP I R   E     L ISL+A     R
Sbjct: 130 NYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNAAMPWKR 189

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             L+P+ + +PL+ L++A R +  L    R+T EYVM+ G+N    DA  L ++L GIP 
Sbjct: 190 RALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVGEEDAAALGRLLAGIPV 247

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAACGQLKS 367
           ++N I  N   G  Y   D+ +   F + + R    +P+  R   G D  AACG L S
Sbjct: 248 RLNPIAVNDASG-RYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQDEHAACGMLAS 304


>gi|197124743|ref|YP_002136694.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter
           sp. K]
 gi|196174592|gb|ACG75565.1| Radical SAM domain protein [Anaeromyxobacter sp. K]
          Length = 338

 Score =  152 bits (384), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 106/298 (35%), Positives = 149/298 (50%), Gaps = 32/298 (10%)

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCY 132
           E VD +   DG RK+L   P       + +ETV IP   +   +C+SSQ GC+L C+FC 
Sbjct: 64  EAVDAR---DGFRKYLFELP-----DGLRVETVRIPLFDTHHVVCLSSQAGCALGCAFCA 115

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           T    L R+L + E++ Q+L  R+         D E        R I+ +V MG GEP  
Sbjct: 116 TAKLGLDRSLRSWEMVSQLLAVRA---------DSE--------RPITGVVFMGQGEPFL 158

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLR 251
           N+D V  +     D  G     RRI++ST+G VP I R   E     L ISL+A     R
Sbjct: 159 NYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNAAMPWKR 218

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             L+P+ + +PL+ L++A R +  L    R+T EYVM+ G+N    DA  L ++L GIP 
Sbjct: 219 RALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVGEEDAAALGQLLAGIPV 276

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAACGQLKS 367
           ++N I  N   G  Y   D+ +   F + + R    +PI  R   G D  AACG L S
Sbjct: 277 RLNPIAVNDASG-RYRPPDEDEWNAFRDALARELPGTPIVRRYSGGQDEHAACGMLAS 333


>gi|84997417|ref|XP_953430.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65304426|emb|CAI76805.1| hypothetical protein, conserved [Theileria annulata]
          Length = 399

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 177/373 (47%), Gaps = 67/373 (17%)

Query: 25  GIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISC 82
            +PQ     R SQI+  IY     +F  M  + + +R  L+ +F  S++    V E  S 
Sbjct: 18  SVPQ----YRLSQIFNSIYRNKTPNFLSMYHLPKILRSGLHDNFEGSLLSLNPVSESNS- 72

Query: 83  DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142
           D  +K L +           IE V +   +  +LC+S+QVGCS  CSFC TG   L RNL
Sbjct: 73  DRAKKVLFQ-----NSDGSRIEAVLLHFNTHKSLCISAQVGCSYACSFCATGKIGLKRNL 127

Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202
           T +EI  QVL  + L                  G KI +I  MGMGEPL N  NV KS++
Sbjct: 128 TVDEITDQVLYFQQL------------------GHKIDSISFMGMGEPLSN-PNVFKSIN 168

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKY 261
           I +D    + S RRI +ST G +P I ++ +E   V LA SLH+   + RN +VP+N  Y
Sbjct: 169 ILTDKRYFALSPRRINVSTVGILPGIKKLNKEYPYVNLAYSLHSPFTEERNEMVPVNLLY 228

Query: 262 PLEMLIDACRHYPGLS-----NARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---- 312
           P +        YP +        RRI   Y+++K  ND+      LI I+KG P +    
Sbjct: 229 PFQ------EAYPLMDERIRQTGRRIWISYILIKDKNDTKEHVEELINIIKGRPKEVQYL 282

Query: 313 --INLIPFN---PW-----PGCEYLC----------SDQKDIVTFSECIKRSGYSSPIRT 352
             +NLIP+N   P          +LC          ++    + F + ++++G S   R 
Sbjct: 283 YHVNLIPYNIGMPQILVLTHQTTFLCLVKSIDKYESTEHDQSLKFEKYLRKNGISCSYRN 342

Query: 353 PRGLDILAACGQL 365
             G +I AACGQL
Sbjct: 343 YFGRNIDAACGQL 355


>gi|220919464|ref|YP_002494768.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957318|gb|ACL67702.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 338

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 149/298 (50%), Gaps = 32/298 (10%)

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCY 132
           E VD +   DG RK+L   P       + +ETV IP   +   +C+SSQ GC+L C+FC 
Sbjct: 64  EAVDAR---DGFRKYLFELP-----DGLRVETVRIPLFDTHHVVCLSSQAGCALGCAFCA 115

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           T    L R+L + E++ Q+L  R+         D E        R I+ +V MG GEP  
Sbjct: 116 TAKLGLDRSLRSWEMVAQLLAVRA---------DSE--------RPITGVVFMGQGEPFL 158

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLR 251
           N+D V  +     D  G     RRI++ST+G VP I R   E     L ISL+A     R
Sbjct: 159 NYDEVLTAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNAAMPWKR 218

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             L+P+ + +PL+ L++A R +  L    R+T EYVM+ G+N    DA  L ++L GIP 
Sbjct: 219 RALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVGEEDAAALGQLLAGIPV 276

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAACGQLKS 367
           ++N I  N   G  Y   D+ +   F + + R    +P+  R   G D  AACG L S
Sbjct: 277 RLNPIAVNDASG-RYCPPDEDEWNAFRDALARELPGTPVVRRYSGGQDEHAACGMLAS 333


>gi|226498566|ref|NP_001144705.1| hypothetical protein LOC100277741 [Zea mays]
 gi|195646072|gb|ACG42504.1| hypothetical protein [Zea mays]
          Length = 381

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 162/346 (46%), Gaps = 43/346 (12%)

Query: 38  IWKWIYVRG-IRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARC 96
           IWK++       D  G+  +      LL Q F      +     S D T   LL     C
Sbjct: 37  IWKYVLQNPRCSDLDGVPSLPAAAYALLRQKFRPTTSTLTAAADSKDRTTTKLLI----C 92

Query: 97  IGGPVEIETVYI--------------PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142
           +     +E V +              P   R TLCVSSQVGC + C FC TGT     NL
Sbjct: 93  LQNGESVEAVVMRYDTRLGKYDGKPRPGGVRSTLCVSSQVGCKMGCRFCATGTMGFKSNL 152

Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202
           ++ EI                   +E +V  S   +I N+V MGMGEP+ N++ + +++ 
Sbjct: 153 SSGEI-------------------VEQLVHASRYSQIRNVVFMGMGEPMNNYNALVEAIG 193

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKY 261
           + + S     S +RIT+ST G +  I +  G+   V LA+SLHA   D+R  ++P  R +
Sbjct: 194 VFTGS-PFQLSPKRITVSTVGIIHGINKFNGDLPKVNLAVSLHAPDQDIRCQIMPAARAF 252

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP- 320
           PL  L++A + Y   S  + I  EY+ML G+ND    A  L K+L+   A +NLIPFNP 
Sbjct: 253 PLGKLMNALQSYQNESK-QTIFIEYIMLDGVNDQEEHAHQLGKLLETFKAVVNLIPFNPI 311

Query: 321 WPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILAACGQL 365
                +  S  +++  F + +K      + IR   G DI  ACGQL
Sbjct: 312 GSSSNFKTSSDQNVKNFQKVLKGIYRIRTTIRQQMGQDIAGACGQL 357


>gi|328773686|gb|EGF83723.1| hypothetical protein BATDEDRAFT_3639 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 368

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 187/379 (49%), Gaps = 56/379 (14%)

Query: 17  LEEALLKIGIPQRHVRMRTSQ-IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           L+E +LK      ++  + +Q +W++   R  + F  + ++ ++   +L   F+ +  ++
Sbjct: 4   LDEGMLKEAFNLHNISPKHAQKLWRYFIQRNAKSFTDVPELPKQALQILESDFTPMTSKV 63

Query: 76  VDEKISCDGTRKWLL--------------RFP--ARCIGGPVEIETVYIPEKSRGTLCVS 119
           +    + DG+   LL              R+    + + G ++  +       R TLCVS
Sbjct: 64  ISRTDNADGSTTKLLVELQDGQRIESVIMRYEKMTKDMDGNIKYRS-----NKRATLCVS 118

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC++ C+FC TGT  L+ NL+A EIL Q++ A  +                     I
Sbjct: 119 SQVGCAMGCTFCATGTMGLLANLSAGEILEQLVHANQV-------------------EHI 159

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP---NIARVGEEIG 236
            N+V MGMGEPL N+  V  +++   D+     S  RI++ST G VP   ++ R   +IG
Sbjct: 160 RNVVFMGMGEPLDNYPAVLMAVNGMIDTSRFGLSPSRISVSTVGVVPRMRSLVRDMPDIG 219

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA--------RRITFEYVM 288
             LA+SLHA + +LR  +VP  + + +E +++A   +    NA        + +  EYV+
Sbjct: 220 --LALSLHAPTQELRTQIVPTAKAWNIERIMEAADVFIAQQNANVKSHNRRKHVLIEYVL 277

Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKR-SGY 346
           +  INDS   A  L K+L+G    +N+IP+NP     +Y    Q+ +  F + ++R    
Sbjct: 278 IADINDSEVVAHQLGKLLEGRDVLLNVIPYNPTSVPYDYKPPLQETMKVFVDIVRRVYNV 337

Query: 347 SSPIRTPRGLDILAACGQL 365
            + +R   G DI +ACGQL
Sbjct: 338 HTLLRQELGQDISSACGQL 356


>gi|160880358|ref|YP_001559326.1| radical SAM protein [Clostridium phytofermentans ISDg]
 gi|205829630|sp|A9KK15|CFR_CLOPH RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|160429024|gb|ABX42587.1| radical SAM enzyme, Cfr family [Clostridium phytofermentans ISDg]
          Length = 344

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 179/363 (49%), Gaps = 43/363 (11%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           E +++ +  + +P      R  QI K I+ +    F+ MS +  E++  L   F    P 
Sbjct: 7   ETMKQLIADMKLPD----YRYEQIIKAIFSQHTSTFEKMSTLPLELKKSLINTFG---PS 59

Query: 75  IV-DEKISCDGT---RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
           +     ++C  +    K L   P    G  VE   ++  +K   + C+SSQ GC   C F
Sbjct: 60  VCCTVPVACQTSGQADKILFSLPD---GNRVETVNLHY-KKGWESFCISSQCGCGFGCQF 115

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TGT    RN+TA+EI  Q+L                       G K+++I  MGMGEP
Sbjct: 116 CATGTLGHKRNMTADEITDQLL------------------YFHLNGHKLNSISFMGMGEP 157

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSND 249
           L N  N+  +L+I +DS     S+RRIT+ST G +P I R+  E   + LA SLH+   +
Sbjct: 158 LAN-PNLFDALNILNDSSLFGLSQRRITISTIGIIPGIKRLTHEFPQINLAYSLHSPFEN 216

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-- 307
            R+ L+P+NR +PL  +++A  ++      RR+   Y+ML G+NDS   A  L+++L+  
Sbjct: 217 QRSELMPVNRSFPLHEVMNALDNHI-RHTGRRLFLAYIMLNGVNDSVDHAKALVELLQDR 275

Query: 308 ---GIPAKINLIPFNPWPGC--EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
                   ++LIP+N       ++  SD+  +  F + +  +G S   RT  G DI AAC
Sbjct: 276 GPWAHLYHVDLIPYNATDKTPRKFASSDKITMKRFRDILHANGISVATRTQFGSDISAAC 335

Query: 363 GQL 365
           GQL
Sbjct: 336 GQL 338


>gi|226314089|ref|YP_002773985.1| chloramphenicol/florfenicol resistance protein [Brevibacillus
           brevis NBRC 100599]
 gi|226097039|dbj|BAH45481.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 343

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 174/346 (50%), Gaps = 43/346 (12%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD----EKISCDGTRKWL 89
           R +QI   I+ + I +++ M+ + + +R  LN+   I+ P +      ++++     K L
Sbjct: 23  RYAQIMDAIFKQNIGEYERMTILPKFLRDELNR---ILGPNVCSIAPVKELTSKQVSKVL 79

Query: 90  LRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
              P     G  ++E V +  E+   + C+S+Q GC   C FC TGT  L RNLTA+EI 
Sbjct: 80  FAIP-----GDEQVEAVRLTYERGWKSYCISTQCGCGFRCKFCATGTIGLKRNLTADEIT 134

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q+L  R                    G  + +I  MGMGE L N  ++ ++++I +D  
Sbjct: 135 DQLLYFR------------------LNGHSLDSISFMGMGEALAN-PHIFEAMTILTDPY 175

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPL-EML 266
                 RRIT+ST G +P I ++  E   V L  SLH+  +D R+ L+PIN ++P+ ++L
Sbjct: 176 LFGLGHRRITISTIGLLPGIDKLTREFPQVNLTFSLHSPFDDQRSELMPINDRFPVRDVL 235

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPW 321
           I   RH       R++   Y++L+G+NDS   A  + ++L+G  A      +NLIPFN  
Sbjct: 236 IALDRHIR--ETGRKVYIAYILLRGVNDSTAHAEAVAELLRGRGAWEHLYHVNLIPFNST 293

Query: 322 PGC--EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                 Y  SD   I  F   +K  G S  +RT  G DI AACGQL
Sbjct: 294 EVTPDSYRQSDPSRIKAFVRILKSRGISVTVRTQFGSDINAACGQL 339


>gi|23004907|ref|ZP_00047999.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum
           magnetotacticum MS-1]
          Length = 232

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 130/239 (54%), Gaps = 16/239 (6%)

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R TLCVSSQ GC + C FC TG   L RNL+  EI+ QV  A   L D           I
Sbjct: 4   RSTLCVSSQAGCGMACPFCATGQLGLTRNLSVAEIVEQVRSAARSLADGE---------I 54

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIAR 230
           P    +++N+V MGMGEPL N+  V  ++   +A    GL  S R IT+ST G VP + +
Sbjct: 55  PGGPARLNNLVFMGMGEPLANYKAVMGTVRRLVAPAPDGLGMSARNITVSTVGLVPAMRK 114

Query: 231 VGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           + +E I V LA+SLHA  +DLR+ LVPIN ++ ++  +DA RHY  ++  RR++ EY ++
Sbjct: 115 LADEGIPVTLALSLHAPDDDLRSELVPINTRWSVDETLDAARHYFEVT-GRRVSIEYALI 173

Query: 290 KGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
           K +ND    A  L + L         +N IP NP PG  +  SD      F   ++  G
Sbjct: 174 KDMNDHAWRADLLGEKLNARGRGWVHVNPIPLNPTPGSIWTGSDPAVEAEFVARLRGHG 232


>gi|219114843|ref|XP_002178217.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409952|gb|EEC49882.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 296

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 160/311 (51%), Gaps = 35/311 (11%)

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVGCSLTCSFCYT 133
           V E ++ DGT K LL+     + G +++ETV IP  E+ R TLCVSSQVGC   C+FC T
Sbjct: 1   VHESVAADGTTKLLLQL----VDG-LQVETVIIPWDERQRSTLCVSSQVGCRQACTFCLT 55

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   ++R+L+A+EIL+QVLLA+        C   E  + P     I NIV MGMGEP  N
Sbjct: 56  GRMGILRSLSADEILVQVLLAKR------ACR--ENNIYP-----IDNIVFMGMGEPADN 102

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253
            D V ++ ++ +       + RRIT+ST    P+      +  V LA S+HA    +R  
Sbjct: 103 TDAVVRAANVLTHQQQFQLTPRRITISTVAPSPDAFLKLGKAPVALAWSVHASREAVRRE 162

Query: 254 LVPINRKYPLEMLIDA-CRHYPGLSNARRIT-FEYVMLKGINDSPRDALN-------LIK 304
           LVP   KY +E L +   +     S + R T  E  +L  INDS  DA +       L+K
Sbjct: 163 LVPTT-KYTMEELREGYIKALLDRSRSMRTTMLEVTLLDKINDSLEDAEHLADFCQPLLK 221

Query: 305 ILKGIPAKINLIPFNP-----WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            + GI   +NLIP+N       P   Y     + I  F + +   G    +RT RG D  
Sbjct: 222 SVPGIKLVVNLIPWNDISASFGPASVYRKPTTERIGEFQKALIGRGILCYVRTTRGDDEG 281

Query: 360 AACGQLKSLSK 370
           AACGQL + +K
Sbjct: 282 AACGQLATTNK 292


>gi|207723161|ref|YP_002253560.1| hypothetical protein 48 [Ralstonia solanacearum MolK2]
 gi|206588355|emb|CAQ35318.1| conserved hypothetical protein 48 [Ralstonia solanacearum MolK2]
          Length = 396

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 103/160 (64%)

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
           D      S+RR+TLSTSG VP + R+  ++ V LA+SLHA ++ LR++LVP+N+KYPL  
Sbjct: 201 DDNAYGLSRRRVTLSTSGVVPMMDRLSRDLPVALAVSLHASNDALRDVLVPLNKKYPLAE 260

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           L+ ACR Y   +    ITFEY ML G+NDS   A  L++++  +P K NLIPFNP+P   
Sbjct: 261 LMAACRRYLEFAPRDFITFEYCMLDGVNDSIEHARELLRVIADVPCKFNLIPFNPFPESG 320

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              S+ + I  FS+ +  +G  + IR  RG DI AACGQL
Sbjct: 321 LKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 360



 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 5/119 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +WI+  G  DF  M+D+++ +R  L    +I  P ++ + +S DGTRKWL+  
Sbjct: 27  FRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRATIQAPAVISDHLSSDGTRKWLVD- 85

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
               +G    +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q   RNL+  EI+ Q+
Sbjct: 86  ----VGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQL 140


>gi|224060769|ref|XP_002300266.1| predicted protein [Populus trichocarpa]
 gi|222847524|gb|EEE85071.1| predicted protein [Populus trichocarpa]
          Length = 373

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 171/346 (49%), Gaps = 44/346 (12%)

Query: 38  IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARC 96
           IWK++      ++  + D+      LL   F      +     S DG T K L++     
Sbjct: 29  IWKYVIKNPNCEWDDIPDLPSAAYSLLRSKFKTSTSSVDSVINSNDGVTTKLLVKLQNGA 88

Query: 97  IGGPVEIETVYI--------------PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142
                 +E V +              P   R TLC+SSQVGC + C FC TG+     NL
Sbjct: 89  F-----VEAVIMRYDTRLGKYCGKPRPGGPRSTLCISSQVGCKMGCKFCATGSMGFKNNL 143

Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202
           ++ EI+ Q++ A  L                    +I N+V MGMGEPL N+  + +++ 
Sbjct: 144 SSGEIVEQLVHASCL-------------------SQIRNVVFMGMGEPLNNYSALVEAVR 184

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKY 261
            A   +    S +RIT+ST G +  I ++ +++ G+ LA+SLHA   D+R  ++P  R +
Sbjct: 185 -AMSGVPFQLSPKRITVSTVGIIHAINKLHKDLPGLNLAVSLHAPVQDVRCQIMPAARAF 243

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321
           PLE L+DA + Y   ++ ++I  EY+ML G+ND  + A  L K+L+     +NLIPFNP 
Sbjct: 244 PLEKLMDALQVYQK-NSMQKIFIEYIMLDGVNDEEQHAHQLGKLLETFDVVVNLIPFNPI 302

Query: 322 PG-CEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILAACGQL 365
               ++  S ++ ++ F + ++  +   + +R   G DI  ACGQL
Sbjct: 303 GSLSQFRTSSEEKVLRFQKILRGVNNIRTTVRKQMGQDISGACGQL 348


>gi|225428987|ref|XP_002265287.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147817733|emb|CAN60150.1| hypothetical protein VITISV_044331 [Vitis vinifera]
 gi|296083052|emb|CBI22456.3| unnamed protein product [Vitis vinifera]
          Length = 372

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 91/260 (35%), Positives = 137/260 (52%), Gaps = 24/260 (9%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P   R TLC+SSQVGC + C FC TG+     NL++ EI+ Q++ A              
Sbjct: 110 PGGPRSTLCISSQVGCKMGCKFCATGSMGFKSNLSSGEIVEQLVHASHF----------- 158

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
                    +I N+V MGMGEPL N+  + +++ I   S     S ++IT+ST G +  I
Sbjct: 159 --------SQIRNVVFMGMGEPLNNYSALVEAIHIMQGS-PFQLSPKKITVSTVGIIHAI 209

Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            ++  ++  + LA+SLHA   D+R  ++P  R +PLE L+D  R Y   ++ ++I  EY+
Sbjct: 210 NKLQSDLPNLNLAVSLHAPVQDIRCQIMPAARAFPLEKLMDTLRTYQ-TNSGQKIFIEYI 268

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347
           ML  +ND  + A  L K+L+     +NLIPFNP     Y  +  +  V   + I R  Y+
Sbjct: 269 MLDEVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGNLSYFKTSSEQKVARFQKILRGTYN 328

Query: 348 --SPIRTPRGLDILAACGQL 365
             + +R   G DI  ACGQL
Sbjct: 329 IRTTVRKQMGQDISGACGQL 348


>gi|255080924|ref|XP_002504028.1| predicted protein [Micromonas sp. RCC299]
 gi|226519295|gb|ACO65286.1| predicted protein [Micromonas sp. RCC299]
          Length = 485

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 158/318 (49%), Gaps = 17/318 (5%)

Query: 56  ISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG 114
           I +  R  + + F++I   I D + S DG T K ++       G  VE   V   +K R 
Sbjct: 66  IPKFARDQIPERFALITTTIADCQTSKDGSTTKMVVELQD---GHRVE-SVVMRHDKGRV 121

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD---FPGCEDIEGMV 171
           TLCVSSQVGC + C+FC TGT   + NLT+ EIL Q++ A  L  D     G   + G  
Sbjct: 122 TLCVSSQVGCKMGCTFCATGTLGELGNLTSGEILEQLVHANRLFNDDGTGAGLRRVSG-- 179

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR- 230
                  + N+V MGMGEPL N+D V  ++   +D    + +  R+T+ST G VP + R 
Sbjct: 180 ---TAHGVRNLVFMGMGEPLNNYDAVVGAIGPMTDPNAFALAPSRVTVSTVGVVPKMRRL 236

Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
           V +  GV LA+SLHA +  LR  +VP    Y L  ++ A   Y       R   EY +L 
Sbjct: 237 VRDAPGVCLALSLHAPNQRLREKIVPTATAYKLPDILSALDEYLATGPKVRTMIEYCVLG 296

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYS-- 347
           G+ND+   A  L ++++     +NLIP+NP      +     +D+      +    ++  
Sbjct: 297 GVNDTTECARELGELMRHRDVIVNLIPYNPTATPMGHSPPKMEDVRAMCAVLTGPEFNQF 356

Query: 348 SPIRTPRGLDILAACGQL 365
           + +R   G DI  ACGQL
Sbjct: 357 TTVRHEMGQDISGACGQL 374


>gi|312903419|ref|ZP_07762599.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
 gi|310633295|gb|EFQ16578.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
          Length = 349

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 175/341 (51%), Gaps = 33/341 (9%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  QI   I+   I +F  ++ + + +R +L + F      IV  K +   T+   + F 
Sbjct: 23  RMKQITNAIFPGRINNFNEITVLPKSLRDMLIEEFGESILNIVPLK-AQQSTQVSKVLFG 81

Query: 94  ARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
              I G  +IETV +  K+   + C+SSQ GC+  C FC TG   L RNLT++EI  Q+L
Sbjct: 82  ---ISGDEKIETVNMKYKAGWESFCISSQCGCNFGCKFCATGDIGLKRNLTSDEITDQIL 138

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                                  G  I +I  MGMGE L N   V  +L++ +D    + 
Sbjct: 139 Y------------------FHLQGHSIDSISFMGMGEALANVQ-VFDALNVLTDPALFAL 179

Query: 213 SKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S RR+++ST G +PNI ++ +    V L  SLH+  N+ R+ L+PIN +YPL  ++D   
Sbjct: 180 SPRRLSISTIGIIPNIKKLTQNYPQVNLTFSLHSPFNEQRSELMPINERYPLSDVMDTLD 239

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPWPGC-- 324
            +  ++ +R++   Y+ML G+NDS   A  ++ +L+G         +N+I +NP      
Sbjct: 240 EHIRVT-SRKVYIAYIMLHGVNDSIEHAKEVVNLLRGRYRSGNLYHVNIIRYNPTVSSRM 298

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +  +++K +V F + +K +G    IR+  G+DI AACGQL
Sbjct: 299 RFEEANEKCLVNFYKELKSAGIKVTIRSQFGIDIDAACGQL 339


>gi|242036573|ref|XP_002465681.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor]
 gi|241919535|gb|EER92679.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor]
          Length = 381

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/260 (36%), Positives = 138/260 (53%), Gaps = 24/260 (9%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P   R TLCVSSQVGC + C FC TGT     NL++ EI                   IE
Sbjct: 119 PGGLRSTLCVSSQVGCKMGCRFCATGTMGFKSNLSSGEI-------------------IE 159

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
            +V  S   +I N+V MGMGEP+ N++ + +++ + + S     S +RIT+ST G +  I
Sbjct: 160 QLVHASRYSQIRNVVFMGMGEPMNNYNALVEAIGVFTGS-PFQLSPKRITVSTVGIIHGI 218

Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            +   ++  V LA+SLHA   D+R  ++P  R +PL  L++A + Y   S  + I  EY+
Sbjct: 219 NKFNADLPKVNLAVSLHAPDQDIRCQIMPAARAFPLVKLMNALQSYQNESK-QTIFIEYI 277

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGY 346
           ML G+ND    A  L K+L+   A +NLIPFNP      +  S  +++  F + +K   +
Sbjct: 278 MLDGVNDQEEHAHQLGKLLETFKAVVNLIPFNPIGSLSNFKTSSDQNVKKFQKVLKGIYH 337

Query: 347 -SSPIRTPRGLDILAACGQL 365
             + +R   G DI  ACGQL
Sbjct: 338 IRTTVRQQMGQDIAGACGQL 357


>gi|255074899|ref|XP_002501124.1| predicted protein [Micromonas sp. RCC299]
 gi|226516387|gb|ACO62382.1| predicted protein [Micromonas sp. RCC299]
          Length = 368

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 181/384 (47%), Gaps = 57/384 (14%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +E+E      GI +  +R+     ++ ++ RG   F+   D+S     LL  +F++   E
Sbjct: 7   DEVERFARDRGIKKSSLRL----CYRELFRRGKSTFENAPDVSARDMKLLRDNFTVCTSE 62

Query: 75  IVDEKISCDGT-RKWLLRF-----------------------PARCIGGPVEIETVYIPE 110
           +V+ K + DG+  K ++R                          R  G   ++       
Sbjct: 63  VVETKTTEDGSGAKMVVRLHDGKLVETVVIGHSRSVDDGDGDETRGDGEDADVSDGAKNR 122

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
             R T+CVSSQVGC++ C+FC TGT  L+ NLTA EI  QV  AR+L G           
Sbjct: 123 VFRNTVCVSSQVGCAMGCTFCETGTLGLMANLTAGEICEQVWHARNLCG----------- 171

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
              S G  + N+VMMGMGEPL N++ V  +L   +        +R +T+ST G   +I R
Sbjct: 172 ---STG--VRNVVMMGMGEPLDNYEEVLIALRAMTHQAVFDMRQRSVTVSTVGVPASIRR 226

Query: 231 VGEEI-GVMLAISLHAVSNDLRNILVP--INRKYPLEMLIDACRHYPGLSNARRITFEYV 287
           + ++   V LA+SLHA + DLR  L+P      + L  L ++ R++   S  R    EY+
Sbjct: 227 LADDAPNVGLALSLHAPTQDLRATLLPSAAGTSHTLGRLTESLRYHRQKS-GRGAMIEYI 285

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP--GCEYLCSDQKDIVTFSECI--KR 343
           ++ G+NDSP  A  L ++       +NLIP+NP    G     S   D +     I    
Sbjct: 286 VIDGVNDSPTHARELGELSGYF---VNLIPYNPTDVGGTHGYRSPADDALERMASILGDE 342

Query: 344 SGYSSPIR--TPRGLDILAACGQL 365
            G  + +R  T RG ++  ACGQL
Sbjct: 343 FGVKAKVRWSTRRGREVDGACGQL 366


>gi|218192280|gb|EEC74707.1| hypothetical protein OsI_10424 [Oryza sativa Indica Group]
          Length = 388

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/260 (36%), Positives = 136/260 (52%), Gaps = 24/260 (9%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P   R TLCVSSQVGC + C FC TGT     NL++ EI                   +E
Sbjct: 126 PGGVRSTLCVSSQVGCKMGCRFCATGTMGFKSNLSSGEI-------------------VE 166

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
            +V  S   +I N+V MGMGEPL N+  + +++ +   S     S +RIT+ST G + +I
Sbjct: 167 QLVHASRYSQIRNVVFMGMGEPLNNYTALVEAIQVLIGS-PFQLSPKRITVSTVGIIHSI 225

Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            +   ++  + LA+SLHA   D+R  ++P  R +PL  L++A + Y   S  + I  EY+
Sbjct: 226 NKFNNDLPNINLAVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNESK-QTIFIEYI 284

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347
           ML G+ND  + A  L K+L+   A +NLIPFNP        +  +  V   + I R  Y+
Sbjct: 285 MLDGVNDQEQHAHQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYN 344

Query: 348 --SPIRTPRGLDILAACGQL 365
             + IR   G DI  ACGQL
Sbjct: 345 IRTTIRQQMGQDIAGACGQL 364


>gi|115451403|ref|NP_001049302.1| Os03g0202300 [Oryza sativa Japonica Group]
 gi|108706720|gb|ABF94515.1| radical SAM enzyme, Cfr family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113547773|dbj|BAF11216.1| Os03g0202300 [Oryza sativa Japonica Group]
          Length = 388

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/260 (36%), Positives = 136/260 (52%), Gaps = 24/260 (9%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P   R TLCVSSQVGC + C FC TGT     NL++ EI                   +E
Sbjct: 126 PGGVRSTLCVSSQVGCKMGCRFCATGTMGFKSNLSSGEI-------------------VE 166

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
            +V  S   +I N+V MGMGEPL N+  + +++ +   S     S +RIT+ST G + +I
Sbjct: 167 QLVHASRYSQIRNVVFMGMGEPLNNYTALVEAIQVLIGS-PFQLSPKRITVSTVGIIHSI 225

Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            +   ++  + LA+SLHA   D+R  ++P  R +PL  L++A + Y   S  + I  EY+
Sbjct: 226 NKFNNDLPNINLAVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNESK-QTIFIEYI 284

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347
           ML G+ND  + A  L K+L+   A +NLIPFNP        +  +  V   + I R  Y+
Sbjct: 285 MLDGVNDQEQHAHQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYN 344

Query: 348 --SPIRTPRGLDILAACGQL 365
             + IR   G DI  ACGQL
Sbjct: 345 IRTTIRQQMGQDIAGACGQL 364


>gi|187776707|ref|ZP_02993180.1| hypothetical protein CLOSPO_00222 [Clostridium sporogenes ATCC
           15579]
 gi|187775366|gb|EDU39168.1| hypothetical protein CLOSPO_00222 [Clostridium sporogenes ATCC
           15579]
          Length = 344

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 164/342 (47%), Gaps = 37/342 (10%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+ K I+ + I +F+ M  + + +R  L   F      ++    S D  +   L F 
Sbjct: 24  RYEQLTKAIFHQRIDNFEDMHILPKALRMALVNEFGKNVSSVI-PVFSQDSKQAQKLLFE 82

Query: 94  ARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
              +     +E V +  K    + C+SSQ GC   C FC TG+    RNLTA+EI  Q+L
Sbjct: 83  ---LTDGERVEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSAGFKRNLTADEITDQLL 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMG 209
                  D                 ++++I  MGMGE   N   FD VK    I +D   
Sbjct: 140 YF--YFND----------------HRLNSISFMGMGEAFANPELFDAVK----ILTDENL 177

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
              S+RRIT+ST G +P I R+ +E   V LA SLH+     R+ L+PIN+++PL  ++ 
Sbjct: 178 FGLSQRRITISTIGIIPRIQRLTKEFPQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMK 237

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPWPG 323
               +  +   RR+   Y+ML+GINDS   A  ++ +LK   +      I+LIP+N    
Sbjct: 238 TLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDK 296

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             +       I  F   +K++G S+ +RT  G +I AACGQL
Sbjct: 297 TTFKFQSSSAIKQFCNTLKKAGISATVRTQFGSEISAACGQL 338


>gi|325677606|ref|ZP_08157260.1| putative 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8]
 gi|324110698|gb|EGC04860.1| putative 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8]
          Length = 377

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 137/266 (51%), Gaps = 23/266 (8%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IETV I  ++  T+CVS+ VGC + C FC +G    +RNL+  EI+ Q++L +       
Sbjct: 79  IETVCIKRRTGNTVCVSTMVGCPVGCIFCASGKNGFIRNLSPAEIVQQIVLLKE------ 132

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                          +++ IV MGMGEPL N+DN+ KS+ I  D  GL+F    I +ST 
Sbjct: 133 ---------------RVNRIVFMGMGEPLFNYDNLIKSIHILRDRNGLNFPTDGINVSTV 177

Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G V  + R+ EE + +   +SLHA     RN+++P  +   +  +++A   Y    N R+
Sbjct: 178 GPVEQLKRLREEHLKIQFTLSLHATDQATRNMIMPHMKSNSIHSVVEAALSYSERHN-RK 236

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           IT  Y++  GIND   D   L K  +G    INL+ +N          +++ +V F   +
Sbjct: 237 ITIAYLLAPGINDRASDVRQLGKWFRGKNVLINLLQYNETACKRIKRPNKQQLVAFKIRL 296

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKS 367
           + +G    +R  RG  I AACGQL S
Sbjct: 297 EEAGLEVKLRESRGNRIKAACGQLVS 322


>gi|56962848|ref|YP_174574.1| florfenicol/chloramphenicol resistance protein [Bacillus clausii
           KSM-K16]
 gi|81366753|sp|Q5WJ42|CFR_BACSK RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|56909086|dbj|BAD63613.1| florfenicol/chloramphenicol resistance protein [Bacillus clausii
           KSM-K16]
          Length = 350

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 171/342 (50%), Gaps = 36/342 (10%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLR 91
           R  QI + I+   I  F  M+ + + +R  L   F  SI+  E V E  S   T K LL+
Sbjct: 26  RYKQITEAIFKHRIGAFNKMTTLPKALRESLINEFGPSILTVEPVLETTSQQVT-KVLLK 84

Query: 92  FPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
                + G  ++E V +  E    + C+SSQ GC L C+FC TG   L +NL+A+E+  Q
Sbjct: 85  -----VAGNNQVEAVRMHYEAGWESFCISSQCGCGLGCTFCSTGAIGLKQNLSADEMTDQ 139

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           +L                       G  + ++  MGMGE L N   +  +L++  D    
Sbjct: 140 LLY------------------FYLKGHSLDSVSFMGMGEALANV-RIFDALNVLVDRQLF 180

Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           + S RRIT+ST G +PNI R+      M L  SLH+  +D R+ L+PIN KYPL+ +++ 
Sbjct: 181 ALSPRRITVSTVGIIPNIQRMTSSFPQMNLTFSLHSPFHDQRSELMPINNKYPLDQVMNV 240

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK-ILKG-IPA--KINLIPFNPWPGC- 324
              +      R++   YVML+G+NDS + A  L+K IL    P    +NLI +NP  G  
Sbjct: 241 LDQHIH-ETGRKVYIAYVMLRGVNDSEKHAEALVKRILNNRYPHLYHVNLIRYNPTVGTP 299

Query: 325 -EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             Y  + ++ + TF   +K +     IR+  G +I AACGQL
Sbjct: 300 ENYGQTIEEKLQTFYRVVKSARIPVTIRSQFGREIDAACGQL 341


>gi|322807173|emb|CBZ04747.1| putative florfenicol resistance protein [Clostridium botulinum
           H04402 065]
          Length = 344

 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 161/342 (47%), Gaps = 37/342 (10%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+ K I+ + I +F  M  + + +R  L   F       V    S D  +   L F 
Sbjct: 24  RYEQLTKAIFHQRINNFDDMHILPKTLRIALVNEFGKNVSS-VTPIFSQDSKQAQKLLFE 82

Query: 94  ARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
              +     IE V +  K    + C+SSQ GC   C FC TG+    RNLTA+EI  Q+L
Sbjct: 83  ---LTDGERIEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSAGFKRNLTADEITDQLL 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMG 209
                                    ++++I  MGMGE   N   FD VK    I +D   
Sbjct: 140 ------------------YFYFNNHRLNSISFMGMGEAFANPELFDAVK----ILTDQNL 177

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
              S+RRIT+ST G +P I R+ +E   V LA SLH+     R+ L+PIN+++PL  ++ 
Sbjct: 178 FGLSQRRITISTIGIIPGIQRLTKEFSQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMK 237

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPWPG 323
               +  +   RR+   Y+ML+GINDS   A  +I +LK   +      I+LIP+N    
Sbjct: 238 TLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVIGLLKNRGSWEHLYHIDLIPYNSTDK 296

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             +       I  F   +K++G S+ +RT  G +I AACGQL
Sbjct: 297 TTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338


>gi|9294428|dbj|BAB02548.1| unnamed protein product [Arabidopsis thaliana]
          Length = 382

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 174/359 (48%), Gaps = 36/359 (10%)

Query: 37  QIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL------ 90
           QIWK++       +  +  +      LL+  F  +   +     S DGT   LL      
Sbjct: 28  QIWKYVIQNPDCVWDEIPSLPSAAYSLLHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQNG 87

Query: 91  --------RFPARC--IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140
                   R+  R   +GG         P   R TLC+SSQVGC + C+FC TGT     
Sbjct: 88  AFVEAVVMRYDTRLGMLGGKPR------PGGIRSTLCISSQVGCKMGCTFCATGTMGFKS 141

Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
           NLT+ EI+ Q++ A S + D     +I  M++P       +    GMGEPL N++ V ++
Sbjct: 142 NLTSGEIVEQLVHA-SRIADI---RNIVFMLLPWF-----DDCDQGMGEPLNNYNAVVEA 192

Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINR 259
           + +  +      S +RIT+ST G V  I ++  ++ GV LA+SLHA   ++R  ++P  R
Sbjct: 193 VRVMLNQ-PFQLSPKRITISTVGIVHAINKLHNDLPGVSLAVSLHAPVQEIRCQIMPAAR 251

Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
            +PL+ L+DA + +   ++ ++I  EY+ML G+ND  + A  L ++LK     INLIPFN
Sbjct: 252 AFPLQKLMDALQTFQK-NSQQKIFIEYIMLDGVNDQEQHAHLLGELLKTFQVVINLIPFN 310

Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYS--SPIRTPRGLDILAACGQLKSLSKRIPKVP 376
           P        +     V+  + I R  Y   + IR   G DI  ACGQL      I K P
Sbjct: 311 PIGSTSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKTP 369


>gi|303271119|ref|XP_003054921.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462895|gb|EEH60173.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 327

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 157/320 (49%), Gaps = 22/320 (6%)

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           +N  F+++   + +   S DG T K ++       +   V    ++   + R TLCVSSQ
Sbjct: 11  VNDAFALMTTTVAECHTSKDGSTTKMVVELQDGHRVEAVVMRHAIHEGGRERNTLCVSSQ 70

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK--- 178
           VGC + C+FC TGT   + NLT  EIL Q++ A+ L       +  +G    +  R    
Sbjct: 71  VGCKMGCTFCATGTLGELGNLTCGEILEQLVHAQRLFRGDGDGDGGDGDGGGASRRVSGR 130

Query: 179 -----ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
                I+N+V MGMGEPL N+D V  +L   +D    + +  R+T+ST G VP +  +  
Sbjct: 131 RRGGGITNLVFMGMGEPLNNYDAVIAALGPITDPKLFALAPSRVTVSTVGVVPRMKTLTR 190

Query: 234 EI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           +  GV LA+SLHA +  LR  +VP  R Y L  L++A   Y       +   EY +L+G+
Sbjct: 191 DAPGVALALSLHAPNQALRESIVPTARAYKLPALMEAMDKYLASGPKVKTMVEYCVLRGV 250

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNP-------WPGCEYLCSDQKDIVTFSECIKRSG 345
           ND    A  L ++L+G    +N IP+NP        P  +       D++T  E     G
Sbjct: 251 NDGVEHARELGELLRGRDVIVNFIPYNPTDVPMGHAPPTKEAVKAMVDVLTGPEF----G 306

Query: 346 YSSPIRTPRGLDILAACGQL 365
             + +R   G DI  ACGQL
Sbjct: 307 QFTTVRHEMGQDIAGACGQL 326


>gi|297834876|ref|XP_002885320.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331160|gb|EFH61579.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 382

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/271 (36%), Positives = 145/271 (53%), Gaps = 14/271 (5%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P   R TLC+SSQVGC + C+FC TGT     NLT+ EI+ Q++ A S + D     +I 
Sbjct: 110 PGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLTSGEIVEQLVHA-SRIADI---RNIV 165

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
            M++P       +    GMGEPL N++ V +++ +         S +RIT+ST G V  I
Sbjct: 166 FMLLPWF-----DDCDQGMGEPLNNYNAVVEAVRVML-KQPFQLSPKRITISTVGIVHAI 219

Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            ++  ++ GV LA+SLHA   ++R  ++P  R +PL+ L+DA + +   S  ++I  EY+
Sbjct: 220 NKLDNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNSQ-QKIFIEYI 278

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347
           ML G+ND  + A  L ++LK     INLIPFNP        +     V+  + I R  Y 
Sbjct: 279 MLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQSVSSFQKILRETYK 338

Query: 348 --SPIRTPRGLDILAACGQLKSLSKRIPKVP 376
             + IR   G DI  ACGQL      I K P
Sbjct: 339 IRTTIRKEMGQDISGACGQLVVNQPDIKKTP 369


>gi|115377656|ref|ZP_01464850.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310824447|ref|YP_003956805.1| ribosomal RNA large subunit methyltransferase n [Stigmatella
           aurantiaca DW4/3-1]
 gi|115365318|gb|EAU64359.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397519|gb|ADO74978.1| Ribosomal RNA large subunit methyltransferase N [Stigmatella
           aurantiaca DW4/3-1]
          Length = 361

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 164/357 (45%), Gaps = 33/357 (9%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQ---GMSDISQEVRHLLNQHFSIIY 72
           EL EAL  +      VR    +++  ++  G R  +       + + V   L  H  +  
Sbjct: 10  ELGEALAPLAPTPTAVR----KVFAAVFAHGARTVEEVCAAPQVPRRVAEHLRAHGQMPR 65

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFC 131
            E+V+ + + DG  K+L   P   +GG   +E V IP    +  +CVSSQVGC+L C FC
Sbjct: 66  LEVVERRQAEDGFVKYLFGSP---LGG--RVEAVRIPIFDEKYIVCVSSQVGCALACDFC 120

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG     RNL   EIL QV+  R                     R +  +V MGMGEPL
Sbjct: 121 MTGKLGFQRNLKTWEILDQVMQVRE-----------------EADRPVRGVVFMGMGEPL 163

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDL 250
            N+    ++  I S+  G + S   IT ST+G VP I R   E     LA S+ +   + 
Sbjct: 164 LNYAETIRAAQILSNPAGFAISGTAITFSTAGMVPAIRRYTSEGHPYRLAFSVTSAIPEK 223

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R  ++PI + +PL  L++A R Y  +   R +   YV + G N    DA  L    +GIP
Sbjct: 224 RLKVLPIEKGHPLPELVEAIREYTQVRRERAM-IAYVAISGFNLGREDAQALKDTFEGIP 282

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            K++LI     P  +YL    +++  F + ++        R   G DI AACG L++
Sbjct: 283 IKVDLIDVTD-PTGKYLPPSAEELKAFRDHLQILKAPIARRYSGGKDIGAACGTLEA 338


>gi|308172367|ref|YP_003919072.1| florfenicol/chloramphenicol resistance like protein [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605231|emb|CBI41602.1| florfenicol/chloramphenicol resistance like protein [Bacillus
           amyloliquefaciens DSM 7]
 gi|328552188|gb|AEB22680.1| chloramphenicol/florfenicol resistance protein [Bacillus
           amyloliquefaciens TA208]
 gi|328910459|gb|AEB62055.1| florfenicol/chloramphenicol resistance like protein [Bacillus
           amyloliquefaciens LL3]
          Length = 348

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 174/344 (50%), Gaps = 37/344 (10%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLL 90
            R  QI   I+   I  F  ++ + + +R +L + F  S++    + E+ S +   K L 
Sbjct: 22  FRMKQITNAIFHGRINHFNEITVLPKSLRKMLVKEFGESVLNIAALKEQHS-EQVTKVLF 80

Query: 91  RFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
                 I G  +IETV +  K+   + C+SSQ GC   C+FC TG   L  NLT++EI  
Sbjct: 81  E-----ISGDEKIETVNMKYKAGWESFCISSQCGCHFGCTFCATGDIGLKHNLTSDEITD 135

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q+L                       G  I +I  MGMGE L N   V  +L + ++   
Sbjct: 136 QILY------------------FHLKGHSIDSISFMGMGEALAN-RQVFDALHVLTNPEL 176

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
            + S RR+++ST G +P I ++ +    V L  SLH+  N+ R+ L+PIN +YPL  ++D
Sbjct: 177 FALSPRRLSISTIGIIPGIKKMTQNYPQVNLTFSLHSPFNEQRSKLMPINERYPLMEVMD 236

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-----INLIPFNPWPG 323
               +  ++ +R++   Y+ML G+NDS   A  ++K+L+G   +     +N+I +NP   
Sbjct: 237 TLDEHIRVT-SRKVYIAYIMLPGVNDSIDHANEVVKLLRGRYKRGNLFHVNIIRYNPTVS 295

Query: 324 C--EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               +   ++  +V F + +K +G +  IR+  G+DI AACGQL
Sbjct: 296 SPMRFKEVNENQVVNFYKTLKSAGINVTIRSQFGIDIDAACGQL 339


>gi|219121243|ref|XP_002185849.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582698|gb|ACI65319.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 290

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/298 (35%), Positives = 147/298 (49%), Gaps = 31/298 (10%)

Query: 81  SCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
           S D T K LLR     +   +E+ETV IP    R TLCVSSQVGC   C+FC TG    +
Sbjct: 5   SRDSTTKLLLR-----LSDGLEVETVIIPWTGGRSTLCVSSQVGCRQGCTFCATGRMGKL 59

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           R+L A+EIL Q+  AR +      C       +P V    +N+V MGMGEP  N D V +
Sbjct: 60  RSLNADEILAQLFFARKI------CRQKN---LPPV----TNVVFMGMGEPADNKDAVIR 106

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259
           +  I +       S  ++T+ST    P+          +LA S+HA +++LR  LVP  +
Sbjct: 107 ATDIMTTRELFQLSASKVTVSTVAPTPDSFLQFAHAHCVLAWSVHAANDELRRQLVPTTK 166

Query: 260 KYPLEM---LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK----ILKGIPA- 311
               E+   LID     P   N R    E  ++ GINDS ++A  L+     I+  +P  
Sbjct: 167 HAMTELRQGLIDTLLIRP--HNFRTTMLEVALISGINDSEKEADELVDFAQVIIDEVPGC 224

Query: 312 --KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
              +NLIPFN      Y     + +  F + ++  G  + IRT RG D  AACGQL +
Sbjct: 225 KLVVNLIPFNDIGQNRYTKPSMEAVSVFQKRLREFGLVAHIRTTRGDDESAACGQLAT 282


>gi|148380815|ref|YP_001255356.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933477|ref|YP_001385100.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153935966|ref|YP_001388569.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A str. Hall]
 gi|205829639|sp|A7FX96|CFR_CLOB1 RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|205829640|sp|A5I5U3|CFR_CLOBH RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|148290299|emb|CAL84423.1| putative florfenicol resistance protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929521|gb|ABS35021.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931880|gb|ABS37379.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A str. Hall]
          Length = 344

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 162/342 (47%), Gaps = 37/342 (10%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+ K I+ + I +F  M  + + +R  L   F      +     S D  +   L F 
Sbjct: 24  RYEQLTKAIFHQRIDNFHDMHILPKALRIALVNEFGKNVSSVT-PIFSQDSKQAQKLLFE 82

Query: 94  ARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
              +     IE V +  K    + C+SSQ GCS  C FC TG+    RNLTA+EI  Q+L
Sbjct: 83  ---LTDGERIEAVGLKYKQGWESFCISSQCGCSFGCRFCATGSAGFKRNLTADEITDQLL 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMG 209
                  D                 ++++I  MGMGE   N   FD VK    I +D   
Sbjct: 140 YF--YFND----------------HRLNSISFMGMGEAFANPELFDAVK----ILTDQNL 177

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
              S+RRIT+ST G +P I R+ +E   V LA SLH+     R+ L+PIN+++PL  ++ 
Sbjct: 178 FGLSQRRITISTIGIIPGIQRLTKEFPQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMK 237

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPWPG 323
               +  +   RR+   Y+ML+GINDS   A  +I +L+   +      I+LIP+N    
Sbjct: 238 TLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAIIGLLRNRGSWEHLYHIDLIPYNSTDK 296

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             +       I  F   +K++  S+ +RT  G +I AACGQL
Sbjct: 297 TTFKFQSSSAIKQFCSTLKKASISATVRTQFGSEISAACGQL 338


>gi|320104471|ref|YP_004180062.1| Radical SAM domain-containing protein [Isosphaera pallida ATCC
           43644]
 gi|319751753|gb|ADV63513.1| Radical SAM domain protein [Isosphaera pallida ATCC 43644]
          Length = 373

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/272 (36%), Positives = 136/272 (50%), Gaps = 21/272 (7%)

Query: 103 IETVYIP--EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           +ETV IP  +++  +LCVSSQ GC + C+FC T      RNL A EI+ Q+L AR+    
Sbjct: 109 VETVLIPLHKENAVSLCVSSQSGCPMACAFCATARLSRRRNLAAWEIVDQILQARAR--- 165

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
                      +   GR+++  V MGMGEP  N+D V  +  I    +GL+ + + IT+S
Sbjct: 166 -----------VELQGRRVTGCVFMGMGEPFLNYDRVMTAAEILRSPIGLAVNAKAITIS 214

Query: 221 TSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T G V  I R   E+    L+ISL A  +  R  LVP+  + PL  LI A R +      
Sbjct: 215 TVGLVAEIDRFTREQRPYRLSISLGAADDATRAQLVPVAARTPLRELIAAARRHQHQRGG 274

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339
            RI   YV +  +N S  DA NL ++L+G+P + NLI     P   +         TF +
Sbjct: 275 -RINLSYVCIANLNTSETDARNLGRLLEGLPVRFNLIDVTD-PTGRFHPPSPAQWNTFRD 332

Query: 340 CIKRSGYSSPI--RTPRGLDILAACGQLKSLS 369
            ++R     PI  R   G DI AACG L   S
Sbjct: 333 ALRRHLPGQPIVRRYSGGADIQAACGTLAGTS 364


>gi|308798845|ref|XP_003074202.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
           tauri]
 gi|116000374|emb|CAL50054.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
           tauri]
          Length = 406

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 175/371 (47%), Gaps = 66/371 (17%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG---IRDFQGMSDISQEVR-HL 63
           SL+G+ + ELE   ++ G+P    + R  Q+   +Y       R     + +S+ +R  L
Sbjct: 88  SLLGLTKRELEALAVERGMP----KFRGKQMADHLYAANGTSARSVDEFTTLSKALRAEL 143

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           +     +    +     + DGT K LLR     +   VE                     
Sbjct: 144 VAAGVRVGRSSVHHVAAATDGTAKLLLRLDDDRV---VE--------------------- 179

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
                      T    RNL   EI+ QVL   +L   F              G++++N+V
Sbjct: 180 -----------TGGFARNLAPHEIVDQVL---ALEEHF--------------GQRVTNVV 211

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
            MGMGEPL N  NV K+  + +  +G+    R IT+ST G   +I ++   ++  +LA+S
Sbjct: 212 FMGMGEPLLNVPNVLKAHEVLNKEIGIG--ARHITISTVGVRGSIEKLAYAQLQSVLAVS 269

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA + +LR  ++P  + YP+E L+  C  Y  ++  RR+TFEY +L G+ND P  A  L
Sbjct: 270 LHAPNQELRETIIPSAKVYPMEDLLQDCEQY-FIATGRRVTFEYTLLGGVNDQPEHAKEL 328

Query: 303 IKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++L  + + + +NLIP+NP    ++    +  +  F + +++    + IR  RGL+  A
Sbjct: 329 GRLLYARNLASHVNLIPYNPVDDADFKRPSRATVYAFRDVLEQERVPASIRQTRGLEAAA 388

Query: 361 ACGQLKSLSKR 371
           ACGQL++  ++
Sbjct: 389 ACGQLRNAYQK 399


>gi|323452575|gb|EGB08449.1| hypothetical protein AURANDRAFT_64082 [Aureococcus anophagefferens]
          Length = 399

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 169/358 (47%), Gaps = 39/358 (10%)

Query: 34  RTSQIWKWIYVRGIRD---FQGMSDISQEVRHLLNQHF-SIIYPEIVDEKISCDGTRKWL 89
           RT  +WK   +R  RD    +   ++S+  R  L   + S       D + + DGT K L
Sbjct: 58  RTRSVWK--ALREGRDPCVQEETPELSRWTRETLTAAYGSGADARCADARTAEDGTTKLL 115

Query: 90  LRFPARCIGGPVEIETVYIPEKSRG----TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145
           + F     G    +E V IP+ +RG    TLCVSSQVGC++ C+FC TG   L+R+LT +
Sbjct: 116 VEF-----GDRDAVEAVLIPQLTRGKATSTLCVSSQVGCAMGCAFCATGKMGLIRSLTDD 170

Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           EI  Q+ LA       P         +P     + +IV MGMG+   N  + K +    +
Sbjct: 171 EIAAQLWLALRAARSVPD--------LP----PLRSIVFMGMGDAGTNPKHAKAAAECFT 218

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
           D     FS+ R+TLST G  P+           LA S+HAV  DLR  LVP     P  +
Sbjct: 219 DPDRFGFSRHRLTLSTVGPSPSAFLALAAAPGQLAWSVHAVDADLRKRLVPTAAWEPEAL 278

Query: 266 ---LIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-----INLI 316
              L+DA R   P  S  R +     +L G+NDS   A  L + ++ + A+     ++LI
Sbjct: 279 RDGLLDALRATRPMHSKERSVMLAVTLLAGVNDSLEHARALAEFVQPVRAETPRLIVDLI 338

Query: 317 PFNPWPGCEYLCSDQKDIVT-FSECIKRS--GYSSPIRTPRGLDILAACGQLKSLSKR 371
           P+NP    +       D V+ F   +K    G    +R  RG D  AACGQL + +++
Sbjct: 339 PYNPIDAADAFQRPSFDAVSAFQRELKAHAPGLFIGVRNARGDDEAAACGQLATNAQK 396


>gi|329930082|ref|ZP_08283701.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
 gi|328935341|gb|EGG31816.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
          Length = 346

 Score =  142 bits (358), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 171/346 (49%), Gaps = 43/346 (12%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-----NQHFSIIYPEIVDEKISCDGTRKW 88
           R SQI + I+   I +F+ M+++ + +R+ L     N   SI  P++  +    +   K 
Sbjct: 23  RYSQITESIFKNKIGNFEAMNNLPKPLRNELIKELGNNVLSIT-PKMEQK---SNQVSKI 78

Query: 89  LLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
           L   P     G   IE+V +  ++   + C+SSQ GC   C+FC TGT  L RNLT +EI
Sbjct: 79  LFAVP-----GDEYIESVRLSYQTGWESYCISSQCGCGFGCTFCATGTLGLKRNLTTDEI 133

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
             Q+L     L + P                + ++  MGMGE L N   V  +L + +D 
Sbjct: 134 TDQLLYFT--LNNHP----------------LDSVSFMGMGEALAN-PYVFDALHVLTDP 174

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEML 266
                  RRIT+ST G +P + ++ +E   + L  SLH+  +D R+ L+PIN  +PLE +
Sbjct: 175 KLFGLGHRRITVSTIGLIPGVKKLTKEFPQINLTFSLHSPFHDQRSELMPINNHFPLEEV 234

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPW 321
           +     +   +  R++   Y++L+GINDS + A  +  +L+G         +NLIP+N  
Sbjct: 235 MTVLDEHIQQT-KRKVYIAYILLRGINDSTKHAEAVADLLRGRGPWEHLYHVNLIPYNST 293

Query: 322 PGC--EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                 ++ SDQ  I  F   +K  G    +RT  G DI AACGQL
Sbjct: 294 DATSQSFVESDQNSINMFLRILKSKGIHVTVRTQFGSDINAACGQL 339


>gi|205829719|sp|A1K1N5|Y122_AZOSB RecName: Full=Probable RNA methyltransferase azo0122
          Length = 347

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 139/266 (52%), Gaps = 23/266 (8%)

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R  LCVS+Q+GC++ C FC TG + L+R L + EI+ QV+LARSL               
Sbjct: 95  RDGLCVSTQLGCAVGCVFCMTGREGLLRQLGSAEIVAQVVLARSL--------------- 139

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV- 231
               R +  +V MGMGEP  N DNV +++ +   + G+    + +  ST G      R+ 
Sbjct: 140 ----RPVKKVVFMGMGEPAHNLDNVLEAIDLLGTAGGIGH--KNLVFSTVGDYRVFERLP 193

Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
            + +   LA+SLH    DLR  L+P   +   + L++    Y   S    I +++ +++G
Sbjct: 194 RQRVKPALALSLHTTRADLRAQLLPRAPQIAPQELVELGERY-ARSTGYPIQYQWTLIEG 252

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
           +NDSP +   ++++L+G  A +NLIP+N  P  E+    ++  V  +  + R G  + +R
Sbjct: 253 VNDSPEEMDGIVRLLRGKYALMNLIPYNSVPELEFRRPGREAAVALAAYLHRHGVLAKLR 312

Query: 352 TPRGLDILAACGQLKSLSKRIPKVPR 377
              G D+   CGQL++   ++ + PR
Sbjct: 313 QSAGQDVEGGCGQLRARVVKMDRRPR 338


>gi|119896414|ref|YP_931627.1| ribosomal RNA large subunit methyltransferase N [Azoarcus sp. BH72]
 gi|119668827|emb|CAL92740.1| probable Fe-S cluster redox enzyme [Azoarcus sp. BH72]
          Length = 390

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 139/266 (52%), Gaps = 23/266 (8%)

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R  LCVS+Q+GC++ C FC TG + L+R L + EI+ QV+LARSL               
Sbjct: 138 RDGLCVSTQLGCAVGCVFCMTGREGLLRQLGSAEIVAQVVLARSL--------------- 182

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
               R +  +V MGMGEP  N DNV +++ +   + G+    + +  ST G      R+ 
Sbjct: 183 ----RPVKKVVFMGMGEPAHNLDNVLEAIDLLGTAGGIGH--KNLVFSTVGDYRVFERLP 236

Query: 233 EE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
            + +   LA+SLH    DLR  L+P   +   + L++    Y   S    I +++ +++G
Sbjct: 237 RQRVKPALALSLHTTRADLRAQLLPRAPQIAPQELVELGERY-ARSTGYPIQYQWTLIEG 295

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
           +NDSP +   ++++L+G  A +NLIP+N  P  E+    ++  V  +  + R G  + +R
Sbjct: 296 VNDSPEEMDGIVRLLRGKYALMNLIPYNSVPELEFRRPGREAAVALAAYLHRHGVLAKLR 355

Query: 352 TPRGLDILAACGQLKSLSKRIPKVPR 377
              G D+   CGQL++   ++ + PR
Sbjct: 356 QSAGQDVEGGCGQLRARVVKMDRRPR 381


>gi|170758262|ref|YP_001788180.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|205829643|sp|B1KZ37|CFR_CLOBM RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|169405251|gb|ACA53662.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 344

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 132/260 (50%), Gaps = 32/260 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           + C+SSQ GC   C FC TG+    RNLTA+EI  Q+L                      
Sbjct: 102 SFCISSQCGCGFGCRFCATGSAGFKRNLTADEITDQLL------------------YFYF 143

Query: 175 VGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
              ++++I  MGMGE   N   FD VK    I +D      S+RRIT+ST G +P I R+
Sbjct: 144 NNHRLNSISFMGMGEAFANPELFDAVK----ILTDQNLFGLSQRRITISTIGIIPGIQRL 199

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            ++   V LA SLH+     R+ L+PIN+++PL  ++     +  +   RR+   Y+ML+
Sbjct: 200 TKKFPQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLE 258

Query: 291 GINDSPRDALNLIKILKGIPA-----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
           GINDS   A  ++ +LK   +      I+LIP+N      +       I  F   +K++G
Sbjct: 259 GINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAG 318

Query: 346 YSSPIRTPRGLDILAACGQL 365
            S+ +RT  G +I AACGQL
Sbjct: 319 ISATVRTQFGSEISAACGQL 338


>gi|153939955|ref|YP_001392137.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum F str. Langeland]
 gi|205829642|sp|A7GH77|CFR_CLOBL RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|152935851|gb|ABS41349.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum F str. Langeland]
 gi|295320142|gb|ADG00520.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum F str. 230613]
          Length = 344

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 162/342 (47%), Gaps = 37/342 (10%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+ K I+ + I +F  M  + + +R  L   F      ++    S D  +   L F 
Sbjct: 24  RYEQLTKAIFHQRIDNFDDMHILPKVLRMSLVNEFGKNVSSVI-PVFSQDSKQAQKLLFE 82

Query: 94  ARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
              +     IE V +  K    + C+SSQ GC   C FC TG+    RNLTA+EI  Q+L
Sbjct: 83  ---LTDGERIEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSAGFKRNLTADEITDQLL 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMG 209
                  D                 ++++I  MGMGE   N   FD VK    I +D   
Sbjct: 140 YF--YFND----------------HRLNSISFMGMGEAFANPELFDAVK----ILTDQNL 177

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
              S+RRIT+ST G +P I  + ++   V LA SLH+     R+ L+PIN+++PL  ++ 
Sbjct: 178 FGLSQRRITISTIGIIPGIQSLTQKFPQVNLAFSLHSPFESQRSDLMPINKRFPLNQVMK 237

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPWPG 323
               +  +   RR+   Y+ML+GINDS   A  ++ +LK   +      I+LIP+N    
Sbjct: 238 TLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDK 296

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             +       I  F   +K++G S+ +RT  G +I AACGQL
Sbjct: 297 TTFKFQSSNAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338


>gi|219129697|ref|XP_002185019.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403514|gb|EEC43466.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 387

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/262 (37%), Positives = 134/262 (51%), Gaps = 24/262 (9%)

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
            SR +LCVSSQ GC++ C+FC TGT  L  NLTA EIL Q+ L +  L            
Sbjct: 125 NSRASLCVSSQCGCAMGCTFCATGTMGLSGNLTAGEILEQIPLPKLDL------------ 172

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                   + N+V MGMGEPL N+ NV ++     D    + +  R+T+ST G V  I +
Sbjct: 173 --------VRNVVFMGMGEPLDNYSNVVEACRALIDRQRWNLAHGRVTVSTVGLVSQIRK 224

Query: 231 VGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT--FEYV 287
           +  E+  V LA+SLHA +   R  +VP  + YPLE LIDA   +      +R     EYV
Sbjct: 225 LTAELPEVSLALSLHAPNQQDRQAIVPTAKHYPLEDLIDALDQHMMAYLQKRTNPMIEYV 284

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL-CSDQKDIVTFSECIKRSGY 346
           ML+G   +   A  L K+ +     +NLIP+N     + L C  ++ +  F E +   G 
Sbjct: 285 MLEGPTSTLECAHQLGKLCENRHLVVNLIPYNQTNVRDVLRCPSREHMEEFREIVASYGS 344

Query: 347 SSPIRTPRGLDILAACGQLKSL 368
              IR   G DI +ACGQL +L
Sbjct: 345 FCTIRKTMGADIDSACGQLITL 366


>gi|170754770|ref|YP_001782469.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum B1 str. Okra]
 gi|205829627|sp|B1IL14|CFR_CLOBK RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|169119982|gb|ACA43818.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum B1 str. Okra]
          Length = 344

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 132/260 (50%), Gaps = 32/260 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           + C+SSQ GC   C FC TG+    RNLTA+EI  Q+L                      
Sbjct: 102 SFCISSQCGCGFGCRFCATGSAGFKRNLTADEITDQLL------------------YFYF 143

Query: 175 VGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
              ++++I  MGMGE   N   FD VK    I +D      S+RRIT+ST G +P I R+
Sbjct: 144 NNHRLNSISFMGMGEAFANPELFDAVK----ILTDQNLFGLSQRRITISTIGIIPGIQRL 199

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            ++   V LA SLH+     R+ L+PIN+++PL  ++     +  +   RR+   Y+ML+
Sbjct: 200 TKKFPQVNLAFSLHSPFESRRSDLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLE 258

Query: 291 GINDSPRDALNLIKILKGIPA-----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
           GINDS   A  ++ +LK   +      I+LIP+N      +       I  F   +K++G
Sbjct: 259 GINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAG 318

Query: 346 YSSPIRTPRGLDILAACGQL 365
            S+ +RT  G +I AACGQL
Sbjct: 319 ISATVRTQFGSEISAACGQL 338


>gi|323453410|gb|EGB09282.1| hypothetical protein AURANDRAFT_12147 [Aureococcus anophagefferens]
          Length = 316

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 160/334 (47%), Gaps = 51/334 (15%)

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTL 116
           +  +  +FS    ++V    S DG+   L+    RC     ++ETV +       SR T+
Sbjct: 4   KEAVAANFSARSVDLVSRHDSSDGSTSKLV-VGLRC---GKKVETVVMRHGTLRSSRVTV 59

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           CVSSQVGC++ CSFC TGT  +  +LT  EI+ QVLLA+ + G                 
Sbjct: 60  CVSSQVGCAMRCSFCATGTMGMQGDLTRGEIVEQVLLAKGVDG----------------- 102

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEI 235
            ++ N+V MGMGEPL N+D V  +     D   L+    R+T+ST G V  I +   +E 
Sbjct: 103 -RLRNVVFMGMGEPLNNYDEVLGACRCLLDDRWLALGGGRVTISTVGVVDRIRSLAADEP 161

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL---------SNARR----- 281
              LA+SLHA + D R  ++P  ++Y L+ L+DA   Y            S  RR     
Sbjct: 162 RANLALSLHAPTQDQRVAIMPAAKRYDLDDLLDALDAYVAEKLRELERRGSRKRRNDEKQ 221

Query: 282 --ITFEYVMLKGINDSPRDALNLIKILK--------GIPAKINLIPFNPWPGCEYLCSDQ 331
             I  EY++L G+NDS  DA  L K+          G  A +NLI +NP P   Y     
Sbjct: 222 PLIMVEYILLGGVNDSVADADALGKLFSRAGAAPRFGGRAMVNLIAYNPTPDLPYDRPSD 281

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             +  F + ++  G  + +R   G D+  ACGQL
Sbjct: 282 AAVAAFQKAVQAHGVLTCVRITMGSDVAGACGQL 315


>gi|226323828|ref|ZP_03799346.1| hypothetical protein COPCOM_01603 [Coprococcus comes ATCC 27758]
 gi|225208012|gb|EEG90366.1| hypothetical protein COPCOM_01603 [Coprococcus comes ATCC 27758]
          Length = 176

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
            G ++SNIV+MG GEPL N+DN  K + + SD  GL+ S+R IT ST G VPNI R+ EE
Sbjct: 12  TGERVSNIVIMGTGEPLDNYDNFLKFIHMVSDEHGLNISQRNITASTCGIVPNIRRLAEE 71

Query: 235 -IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
            + + LA+SLH  + + R  L+P+  KY L  +++AC +Y   +  RRITFEY ++ G+N
Sbjct: 72  KLQITLALSLHGSNQEKRRSLMPVANKYELHEVLEACDYYFEKT-GRRITFEYSLVHGVN 130

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339
           D+P DA  L+ ILK     +NLIP NP     Y   D+K    F +
Sbjct: 131 DTPEDAKELMGILKDRNCHLNLIPVNPIKERNYEKPDKKKCREFQK 176


>gi|261407206|ref|YP_003243447.1| chloramphenicol/florfenicol resistance protein [Paenibacillus sp.
           Y412MC10]
 gi|261283669|gb|ACX65640.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
          Length = 346

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 49/349 (14%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-----NQHFSIIYPEIVDEKISCDGTRKW 88
           R SQI + I+   I +F+ M+++ + VR+ L     N   SI  P++  +    +   K 
Sbjct: 23  RYSQITEAIFKNKIGNFEAMNNLPKPVRNELIKELGNNVLSIT-PKMEQK---SNQVSKI 78

Query: 89  LLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
           L   P     G   IE+V +  ++   + C+SSQ GC   C+FC TGT  L RNLT +EI
Sbjct: 79  LFAIP-----GDEYIESVRLSYQTGWESYCISSQCGCGFGCTFCATGTLGLKRNLTTDEI 133

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIA 204
             Q+L     L + P                + ++  MGMGE L N   FD    +L + 
Sbjct: 134 TDQLLYFT--LNNHP----------------LDSVSFMGMGEALANPYVFD----ALHLL 171

Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPL 263
           +D        RRIT+ST G +P + ++ +E   + L  SLH+  +D R+ L+PIN  +PL
Sbjct: 172 TDPKLFGLGHRRITVSTIGLLPGVKKLTKEFPQINLTFSLHSPFHDQRSELMPINNHFPL 231

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPF 318
           E ++     +   +  R++   Y++L+GINDS + A  +  +L+   +      +NLIP+
Sbjct: 232 EEVMTVLDEHIQQT-KRKVYIAYILLRGINDSTKHAKAVADLLRERGSWEHLYHVNLIPY 290

Query: 319 NPWPGC--EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           N        ++ SDQ  I  F   +K  G    +RT  G DI AACGQL
Sbjct: 291 NSTDATSQSFVESDQNSINMFLRILKSKGIHVTVRTQFGSDINAACGQL 339


>gi|219113956|ref|XP_002176161.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402902|gb|EEC42868.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 471

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/262 (37%), Positives = 134/262 (51%), Gaps = 24/262 (9%)

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
            SR +LCVSSQ GC++ C+FC TGT  L  NLTA EIL Q+ L +  L            
Sbjct: 125 NSRASLCVSSQCGCAMGCTFCATGTMGLSGNLTAGEILEQIPLPKLDL------------ 172

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                   + N+V MGMGEPL N+ NV ++     D    + +  R+T+ST G V  I +
Sbjct: 173 --------VRNVVFMGMGEPLDNYSNVVEACRALIDRQRWNLAHGRVTVSTVGLVSQIRK 224

Query: 231 VGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT--FEYV 287
           +  E+  V LA+SLHA +   R  +VP  + YPLE LIDA   +      +R     EYV
Sbjct: 225 LTAELPEVSLALSLHAPNQQDRQAIVPTAKHYPLEDLIDALDQHMMAYLQKRTNPMIEYV 284

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL-CSDQKDIVTFSECIKRSGY 346
           ML+G   +   A  L K+ +     +NLIP+N     + L C  ++ +  F E +   G 
Sbjct: 285 MLEGPTSTLECAHQLGKLCENRHLVVNLIPYNQTNVRDVLRCPSREHMEEFREIVVSYGS 344

Query: 347 SSPIRTPRGLDILAACGQLKSL 368
              IR   G DI +ACGQL +L
Sbjct: 345 FCTIRKTMGADIDSACGQLITL 366


>gi|301793926|emb|CBW36322.1| SAM-dependent methyltransferase [Streptococcus pneumoniae INV104]
          Length = 243

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 139/244 (56%), Gaps = 22/244 (9%)

Query: 26  IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCD 83
           + Q   + R  QIW+W+Y + ++ F+ M+++S+++   LN  F +  +   IV E  S D
Sbjct: 6   LEQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQGIVQE--SAD 63

Query: 84  GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
           GT K+L   P   +     IETV + +    ++CV++QVGC++ C+FC +G  K  R+L 
Sbjct: 64  GTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLN 118

Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
             EI+ Q++L +    D  G ++           +IS+IV+MG+GEP  N++NV      
Sbjct: 119 NGEIVAQIMLVQKYF-DERGQDE-----------RISHIVVMGIGEPFDNYNNVLNFFRT 166

Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYP 262
            +D  G++   R IT+S SG    I    +E + V LA+SLHA +N+LR+ ++ INR +P
Sbjct: 167 INDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIMKINRAFP 226

Query: 263 LEML 266
           + ++
Sbjct: 227 IRLV 230


>gi|168179276|ref|ZP_02613940.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum NCTC 2916]
 gi|182669853|gb|EDT81829.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum NCTC 2916]
          Length = 344

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 162/342 (47%), Gaps = 37/342 (10%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+ K I+ + I +F  M  + + +R  L   F      ++    S D  +   L F 
Sbjct: 24  RYEQLIKAIFHQRIDNFDDMHILPKALRMSLVNEFGKNVSSVI-PVFSQDSKQAQKLLFE 82

Query: 94  ARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
              +     IE V +  K    + C+S Q GC   C FC TG+    RNLTA+EI  Q+L
Sbjct: 83  ---LTDGERIEAVGLKYKQGWESFCISCQCGCGFGCRFCATGSVGFKRNLTADEITDQLL 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMG 209
                  D                 ++++I  MGMGE   N   FD VK    I +D   
Sbjct: 140 YF--YFND----------------HRLNSISFMGMGEAFANPELFDAVK----ILTDQNL 177

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
              S+RRIT+ST G +P I R+ ++   V LA SLH+     R+ L+PIN+++PL  ++ 
Sbjct: 178 FGLSQRRITISTIGIIPGIQRLTQKFPQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMK 237

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPWPG 323
               +  +   RR+   Y+ML+GINDS   A  ++ +LK   +      I+LIP+N    
Sbjct: 238 TLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDK 296

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             +       I  F   +K++G S+ +RT  G +I AACGQL
Sbjct: 297 TTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338


>gi|168184510|ref|ZP_02619174.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum Bf]
 gi|237796302|ref|YP_002863854.1| chloramphenicol/florfenicol resistance protein [Clostridium
           botulinum Ba4 str. 657]
 gi|182672475|gb|EDT84436.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum Bf]
 gi|229261117|gb|ACQ52150.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum Ba4 str. 657]
          Length = 344

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/260 (35%), Positives = 133/260 (51%), Gaps = 32/260 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           + C+S Q GCS  C FC TG+    RNLTA+EI  Q+L       D              
Sbjct: 102 SFCISCQCGCSFGCRFCATGSVGFKRNLTADEITDQLLYF--YFND-------------- 145

Query: 175 VGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
              ++++I  MGMGE   N   FD VK    I +D      S+RRIT+ST G +P I R+
Sbjct: 146 --HRLNSISFMGMGEAFANPELFDAVK----ILTDQNLFGLSQRRITISTIGIIPGIQRL 199

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            ++   V LA SLH+     R+ L+PIN+++PL  ++     +  +   RR+   Y+ML+
Sbjct: 200 TQKFPQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLE 258

Query: 291 GINDSPRDALNLIKILKGIPA-----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
           GINDS   A  ++ +LK   +      I+LIP+N      +       I  F   +K++G
Sbjct: 259 GINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAG 318

Query: 346 YSSPIRTPRGLDILAACGQL 365
            S+ +RT  G +I AACGQL
Sbjct: 319 ISATVRTQFGSEISAACGQL 338


>gi|226950274|ref|YP_002805365.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|226842506|gb|ACO85172.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 344

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 162/342 (47%), Gaps = 37/342 (10%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
           R  Q+ K I+ + I +F  M  + + +R  L   F      ++    S D  +   L F 
Sbjct: 24  RYEQLIKAIFHQRIDNFDDMHILPKALRMSLVNEFRKNVSSVI-PVFSQDSKQAQKLLFE 82

Query: 94  ARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
              +     IE V +  K    + C+S Q GC   C FC TG+    RNLTA+EI  Q+L
Sbjct: 83  ---LTDGERIEAVGLKYKQGWESFCISCQCGCGFGCRFCATGSVGFKRNLTADEITDQLL 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMG 209
                  D                 ++++I  MGMGE   N   FD VK    I +D   
Sbjct: 140 YF--YFND----------------HRLNSISFMGMGEAFANPELFDAVK----ILTDQNL 177

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
              S+RRIT+ST G +P I R+ ++   V LA SLH+     R+ L+PIN+++PL  ++ 
Sbjct: 178 FGLSQRRITISTIGIIPGIQRLTQKFPQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMK 237

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPWPG 323
               +  +   RR+   Y+ML+GINDS   A  ++ +LK   +      I+LIP+N    
Sbjct: 238 TLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDK 296

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             +       I  F   +K++G S+ +RT  G +I AACGQL
Sbjct: 297 TTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338


>gi|167951357|ref|ZP_02538431.1| radical SAM enzyme, Cfr family protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 220

 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 127/239 (53%), Gaps = 29/239 (12%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + + +L+ + +  +E   +++G    H R     ++KWI+ +G+ DF  M+DIS+ +R  
Sbjct: 1   MNETNLMELDQRSMERCFVELGSKAFHGR----NVFKWIHKQGVIDFNQMTDISKRLRVQ 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L     I  PE+V E+ + DGTRKW+L+     +     IETVYIP+  R T+CVSSQVG
Sbjct: 57  LESLAEIRLPELVFEQPARDGTRKWVLQ-----LDDGQRIETVYIPDGERSTICVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISN 181
           C+L CSFC TG+                           G +   G+  P+V      +N
Sbjct: 112 CALNCSFCSTGSPGFQPQ------------------SLGGGDYRPGLGWPAVNWWHPPTN 153

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           IV+MGMGEPL NFD V  ++ I  D      SK R+T+STSG VP + ++ E   V LA
Sbjct: 154 IVLMGMGEPLANFDAVVTAMDIMQDDSAYMLSKYRVTISTSGIVPALRQLREVSDVSLA 212


>gi|289754992|ref|ZP_06514370.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium
           tuberculosis EAS054]
 gi|289695579|gb|EFD63008.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium
           tuberculosis EAS054]
          Length = 275

 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/269 (33%), Positives = 137/269 (50%), Gaps = 32/269 (11%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV-- 76
            A+ ++G+P      R  Q+    Y R I D + M+D+   VR   ++    ++P ++  
Sbjct: 29  SAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVR---DRIAGAMFPNLLTA 81

Query: 77  DEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
              I+CD   TRK L R     + G +  E+V +    R T+C+SSQ GC + C FC TG
Sbjct: 82  SADITCDAGQTRKTLWR----AVDGTM-FESVLMRYSRRNTVCISSQAGCGMACPFCATG 136

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNL+  EIL QV    + L D               G ++SN+V MGMGEPL N+
Sbjct: 137 QGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMGMGEPLANY 183

Query: 195 DNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251
             V  ++    A    G   S R +T+ST G  P I  + +  +GV LA+SLHA  + LR
Sbjct: 184 ARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLHAPDDGLR 243

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNAR 280
           + LVP+N ++ +   +DA R+Y  ++  R
Sbjct: 244 DTLVPVNNRWRISEALDAARYYANVTGRR 272


>gi|71608924|emb|CAI56203.1| methyltransferase [Staphylococcus aureus]
 gi|76057931|emb|CAJ30491.1| 23S rRNA methylase [Staphylococcus aureus]
          Length = 349

 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 176/343 (51%), Gaps = 37/343 (10%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLR 91
           R  QI   I+ + I  F+ M  + + +R  L  +F  +++  +++ E+ S +   K L  
Sbjct: 25  RIKQITNAIFKQRISRFEDMKVLPKLLREDLINNFGETVLNIKLLAEQNS-EQVTKVLFE 83

Query: 92  FPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
                +     +ETV +  K+   + C+SSQ GC+  C FC TG   L +NLT +EI  Q
Sbjct: 84  -----VSKNERVETVNMKYKAGWESFCISSQCGCNFGCKFCATGDIGLKKNLTVDEITDQ 138

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           VL    L                  G +I +I  MGMGE L N   V  +L   +D    
Sbjct: 139 VLYFHLL------------------GHQIDSISFMGMGEALAN-RQVFDALDSFTDPNLF 179

Query: 211 SFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           + S RR+++ST G +P+I ++ +E   V L  SLH+  ++ R+ L+PIN +YP++ +++ 
Sbjct: 180 ALSPRRLSISTIGIIPSIKKITQEYPQVNLTFSLHSPYSEERSKLMPINDRYPIDEVMNI 239

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGC 324
              +  L+ +R++  +Y+ML G+NDS   A  ++ +LK     G    +NLI +NP    
Sbjct: 240 LDEHIRLT-SRKVYIDYIMLPGVNDSLEHANEVVSLLKSRYKSGKLYHVNLIRYNPTISA 298

Query: 325 E--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              Y  +++  +  F + +K +G    IR+  G+DI AACGQL
Sbjct: 299 PEMYGEANEGQVEAFYKVLKSAGIHVTIRSQFGIDIDAACGQL 341


>gi|289759001|ref|ZP_06518379.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium
           tuberculosis T85]
 gi|289714565|gb|EFD78577.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium
           tuberculosis T85]
          Length = 275

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/269 (33%), Positives = 137/269 (50%), Gaps = 32/269 (11%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV-- 76
            A+ ++G+P      R  Q+    Y R I D + M+D+   VR   ++    ++P ++  
Sbjct: 29  SAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVR---DRIAGAMFPNLLTA 81

Query: 77  DEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
              I+CD   TRK L R     + G +  E+V +    R T+C+SSQ GC + C FC TG
Sbjct: 82  SADITCDAGQTRKTLWR----AVDGTM-FESVLMRYPRRNTVCISSQAGCGMACPFCATG 136

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L RNL+  EIL QV    + L D               G ++SN+V MGMGEPL N+
Sbjct: 137 QGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMGMGEPLANY 183

Query: 195 DNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251
             V  ++    A    G   S R +T+ST G  P I  + +  +GV LA+SLHA  + LR
Sbjct: 184 ARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLHAPDDGLR 243

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNAR 280
           + LVP+N ++ +   +DA R+Y  ++  R
Sbjct: 244 DTLVPVNNRWRISEALDAARYYANVTGRR 272


>gi|307352151|ref|YP_003896025.1| chloramphenicol-florfenicol resistance protein, CFR [Enterococcus
           faecalis]
 gi|307155389|gb|ADN34770.1| chloramphenicol-florfenicol resistance protein, CFR [Enterococcus
           faecalis]
          Length = 349

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 175/343 (51%), Gaps = 37/343 (10%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLR 91
           R  QI   I+ + I  F+ M  + + +R  L  +F  +++  +++ E+ S +   K L  
Sbjct: 25  RIKQITNAIFKQRISRFEDMKVLPKLLREDLINNFGETVLNIKLLAEQNS-EQVTKVLFE 83

Query: 92  FPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
                +     +ETV +  K+   + C+SSQ GC+  C FC TG   L +NLT +EI  Q
Sbjct: 84  -----VSKNKRVETVNMKYKAGWESFCISSQCGCNFGCKFCATGNIGLKKNLTVDEITDQ 138

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           VL    L                  G +I +I  MGMGE L N   V  +L   +D    
Sbjct: 139 VLYFHLL------------------GHQIDSISFMGMGEALAN-RQVFDALDSFTDPNLF 179

Query: 211 SFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           + S RR+++ST G +P+I ++ +E   V L  SLH+  ++ R+ L+PIN +YP++ +++ 
Sbjct: 180 ALSPRRLSISTIGIIPSIKKITQEYPQVNLTFSLHSPYSEERSKLMPINDRYPIDEVMNI 239

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGC 324
              +  L+ +R++   Y+ML G+NDS   A  ++ +LK     G    +NLI +NP    
Sbjct: 240 LDEHIRLT-SRKVYIAYIMLPGVNDSLEHANEVVSLLKSRYKSGKLYHVNLIRYNPTISA 298

Query: 325 E--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              Y  +++  +  F + +K +G    IR+  G+DI AACGQL
Sbjct: 299 PEMYGEANEGQVEAFYKVLKSAGIHVTIRSQFGIDIDAACGQL 341


>gi|302877910|ref|YP_003846474.1| radical SAM domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302580699|gb|ADL54710.1| radical SAM domain protein [Gallionella capsiferriformans ES-2]
          Length = 336

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 139/270 (51%), Gaps = 26/270 (9%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +P   RG LC+S+QVGC++ C FC +G   L+R L + EI+ QV+LAR       
Sbjct: 88  VESVLLP---RGGLCISTQVGCAVGCVFCMSGRNGLIRQLGSAEIVAQVVLARRR----- 139

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         R++S +V MGMGEP  N DNV +++ +       +   + +  ST 
Sbjct: 140 --------------REVSKVVFMGMGEPAHNLDNVLEAIQLLGTQG--NIGHKNLVFSTV 183

Query: 223 GFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G +    R+  E +   LA+SLH     LR  L+P      +E L+    HY  +++   
Sbjct: 184 GDLRVFERLPTETVKPALALSLHTTDAILRARLLPSAPVIAIEELVSLAEHYARITS-YP 242

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           + +++ +++G+NDS  +   ++++L G  A +N IPFN   G +Y     + I   +  +
Sbjct: 243 VQYQWTLIEGVNDSDAELDGIVRLLAGKYAVMNFIPFNEVDGLDYRRPSTERIAAMAYAL 302

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           KR G    IR   G +I  ACGQL++ + R
Sbjct: 303 KRQGVLVKIRDSAGQEIEGACGQLRARAIR 332


>gi|156089225|ref|XP_001612019.1| radical SAM domain containing protein [Babesia bovis]
 gi|154799273|gb|EDO08451.1| radical SAM domain containing protein [Babesia bovis]
          Length = 336

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 157/314 (50%), Gaps = 36/314 (11%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLR 91
           R SQI + +Y     ++  M  I + VR  L+ HF  S++    +    S    R   + 
Sbjct: 28  RLSQILRSVYSAKSSNYLEMYHIPKHVREELHDHFGGSLLS---LKPTTSTKSDRACKVL 84

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
           F  R      ++E V +   +  +LC+SSQVGC+  C+FC TG   L RNL+ +EI  QV
Sbjct: 85  FENR---DKSKVEAVLLSFPTHKSLCISSQVGCAYACAFCATGRIGLKRNLSVDEITDQV 141

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L  R                    G +I +I  MGMGEPL N  NV ++++I SD+   +
Sbjct: 142 LYFR------------------QNGHQIDSISFMGMGEPLSN-PNVFRAINILSDNDLFA 182

Query: 212 FSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            S RR+ +ST G +P + ++  +   V LA S+H+   D RN LVP+N+ YP   + +  
Sbjct: 183 MSSRRLNISTVGILPGLKKLNRDHPHVNLAFSMHSPFTDQRNKLVPVNQLYPFRDVFELL 242

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI------NLIPFNPWPG- 323
                L+  +RI   Y+++KG ND+   A  L+K++   P +I      NLIP+N     
Sbjct: 243 DERIRLT-GKRIWISYILIKGENDTREHAEELVKVISNRPDEIRYLYHVNLIPYNTVKSI 301

Query: 324 CEYLCSDQKDIVTF 337
           C++  ++   I TF
Sbjct: 302 CKFERTEDNVIDTF 315


>gi|34328031|ref|NP_899167.1| florfenicol/chloramphenicol resistance protein [Staphylococcus
           sciuri]
 gi|312620947|ref|YP_003927883.1| rRNA methylase [Bacillus sp. BS-02]
 gi|75466541|sp|Q9FBG4|CFR_STASC RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|205829896|sp|A5HBL2|CFR_STAAU RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|205829901|sp|A2AXI2|CFR_STAWA RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|9909980|emb|CAC04525.1| florfenicol resistance protein [Staphylococcus sciuri]
 gi|33352201|emb|CAE18142.1| florfenicol/chloramphenicol resistance protein [Staphylococcus
           sciuri]
 gi|124001381|emb|CAL64019.1| rRNA methylase [Staphylococcus warneri]
 gi|145974708|gb|ABQ00063.1| Cfr [Staphylococcus aureus]
 gi|185178617|gb|ACC77590.1| 23S rRNA methylase [Staphylococcus aureus]
 gi|307543255|gb|ADN44269.1| rRNA methylase [Bacillus sp. BS-02]
 gi|308275351|emb|CBN88266.1| rRNA methylase [Staphylococcus aureus]
 gi|310772090|emb|CBW44219.1| rRNA methylase [Staphylococcus aureus]
          Length = 349

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 175/343 (51%), Gaps = 37/343 (10%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLR 91
           R  QI   I+ + I  F+ M  + + +R  L  +F  +++  +++ E+ S +   K L  
Sbjct: 25  RIKQITNAIFKQRISRFEDMKVLPKLLREDLINNFGETVLNIKLLAEQNS-EQVTKVLFE 83

Query: 92  FPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
                +     +ETV +  K+   + C+SSQ GC+  C FC TG   L +NLT +EI  Q
Sbjct: 84  -----VSKNERVETVNMKYKAGWESFCISSQCGCNFGCKFCATGDIGLKKNLTVDEITDQ 138

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           VL    L                  G +I +I  MGMGE L N   V  +L   +D    
Sbjct: 139 VLYFHLL------------------GHQIDSISFMGMGEALAN-RQVFDALDSFTDPNLF 179

Query: 211 SFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           + S RR+++ST G +P+I ++ +E   V L  SLH+  ++ R+ L+PIN +YP++ +++ 
Sbjct: 180 ALSPRRLSISTIGIIPSIKKITQEYPQVNLTFSLHSPYSEERSKLMPINDRYPIDEVMNI 239

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGC 324
              +  L+ +R++   Y+ML G+NDS   A  ++ +LK     G    +NLI +NP    
Sbjct: 240 LDEHIRLT-SRKVYIAYIMLPGVNDSLEHANEVVSLLKSRYKSGKLYHVNLIRYNPTISA 298

Query: 325 E--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              Y  +++  +  F + +K +G    IR+  G+DI AACGQL
Sbjct: 299 PEMYGEANEGQVEAFYKVLKSAGIHVTIRSQFGIDIDAACGQL 341


>gi|294461088|gb|ADE76111.1| unknown [Picea sitchensis]
          Length = 384

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 173/370 (46%), Gaps = 49/370 (13%)

Query: 17  LEEALLKIGIPQRHVRMR-TSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
            +EA L+    +R + +R    IWK++ +    +   +  +S     +L   F  +   +
Sbjct: 10  FDEATLRNEFKKRGINIRCIPVIWKYLLLNENAEVFEVPGLSNAAYDVLRSKFIAMTSTV 69

Query: 76  VDEKISCD-GTRKWLLRFPARCIGGPVEIETVYI--------------PEKSRGTLCVSS 120
                S D  T K L++           IETV +              P   R TLCVSS
Sbjct: 70  KATVKSADQSTTKLLIQLQNGSF-----IETVIMSYDTRLGTYAGSPRPGGPRATLCVSS 124

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C+FC TG+     NL+  EI+ Q++ A  +                    +I 
Sbjct: 125 QVGCKMGCTFCATGSMGFKSNLSVGEIVEQLVHAARI-------------------SQIR 165

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF--SKRRITLSTSGFVPNIARVGEEI-GV 237
           N+V MGMGEPL N+ +V +++      +G  F  + R IT+S  G +  I  +  ++  V
Sbjct: 166 NVVFMGMGEPLNNYKSVVEAV---RSMIGHCFQLAPRHITISAVGVIHCINNLKYDLPNV 222

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA   ++R  ++P  R +PL  L+DA   Y   S  R+I  EY+ML GIND  +
Sbjct: 223 NLAVSLHAPLQEIRCQIMPAARAFPLGKLMDALHAYQEHSK-RKIFIEYIMLDGINDQEQ 281

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS--SPIRTPRG 355
            A  L K+L+     +NLI FNP        + +K+ V   + I R  Y+  + +R   G
Sbjct: 282 QAHLLGKLLEEYEVVVNLISFNPIGSISKYRTSKKENVELFQKILRGVYNIRTTVRQEMG 341

Query: 356 LDILAACGQL 365
            DI  ACGQL
Sbjct: 342 QDISGACGQL 351


>gi|292493934|ref|YP_003533077.1| rRNA methylase [Bacillus sp. BS-01]
 gi|291276223|gb|ADD91311.1| rRNA methylase [Bacillus sp. BS-01]
          Length = 349

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 175/343 (51%), Gaps = 37/343 (10%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLR 91
           R  QI   I+ + I  F+ M  + + +R  L  +F  +++  +++ E+ S +   K L  
Sbjct: 25  RIKQITNAIFKQRISRFEDMKVLPKLLREDLINNFGETVLNIKLLAEQNS-EQVTKVLFE 83

Query: 92  FPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
                +     +ETV +  K+   + C+SSQ GC+  C FC TG   L +NLT +EI  Q
Sbjct: 84  -----VSKNERVETVNMKYKAGWESFCISSQCGCNFGCKFCATGDIGLKKNLTVDEITDQ 138

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           VL    L                  G +I +I  MGMGE L N   V  +L   +D    
Sbjct: 139 VLYFHLL------------------GHQIDSISFMGMGEALAN-RQVFDALDSFTDPNLF 179

Query: 211 SFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           + S RR+++ST G +P+I ++ +E   V L  SLH+  ++ R+ L+PIN +YP++ +++ 
Sbjct: 180 ALSPRRLSISTIGIIPSIKKITQEYPQVNLTFSLHSPYSEERSKLMPINDRYPIDEVMNI 239

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGC 324
              +  L+ +R++   Y+ML G+NDS   A  ++ +LK     G    +NLI +NP    
Sbjct: 240 LDEHIRLT-SRKVYIAYIMLPGVNDSLEHANEVVSLLKSRYKSGKLYHVNLIRYNPTISA 298

Query: 325 E--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              Y  +++  +  F + +K +G    IR+  G+DI AACGQL
Sbjct: 299 PEMYGEANEGHVEAFYKVLKSAGIHVTIRSQFGIDIDAACGQL 341


>gi|145344512|ref|XP_001416775.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577001|gb|ABO95068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 298

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 142/306 (46%), Gaps = 26/306 (8%)

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +   ++  E  S DGT   ++       GG V    V    K R TLCVSSQVG
Sbjct: 9   LRANFVLYTTKVRHESRSGDGTTTKMI---VELAGGDVVEACVMRHAKGRTTLCVSSQVG 65

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC TGT   + NL+A EI  Q+  A                   S G  + N+V
Sbjct: 66  CKMGCTFCATGTLGELGNLSAGEICEQLAHA-------------------SRGDAVRNVV 106

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
            MGMGEPL N+ NV  ++   +   G   S  +IT+ST G +P +  +  +  G  LA+S
Sbjct: 107 FMGMGEPLNNYRNVIDAIEAMTSDKGFGLSPAKITVSTVGVIPRMRTLRRDAPGTRLALS 166

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +  LR  +VP    Y LE L+     +       +   EY +L G+ND    A  L
Sbjct: 167 LHAPNQALRQKIVPTATAYKLEDLMATLDEHMASGPKMKTMIEYCVLGGVNDDEACAREL 226

Query: 303 IKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYS--SPIRTPRGLDIL 359
             +L+G    +NLIP NP      ++   ++ +    E +    +   + +R   G DI 
Sbjct: 227 GALLRGKEVIVNLIPLNPTDTPAGHVPPTREAVQKMLEILTSPEFDLFTTVRHEMGQDIA 286

Query: 360 AACGQL 365
            ACGQL
Sbjct: 287 GACGQL 292


>gi|307103703|gb|EFN51961.1| hypothetical protein CHLNCDRAFT_27272 [Chlorella variabilis]
          Length = 384

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 142/273 (52%), Gaps = 43/273 (15%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
           GG V+     +    R TLCVSS+VGC++ C+FC TGT  L  +LTA EI+ Q++ A S+
Sbjct: 107 GGWVDGWVAAMEGGKRTTLCVSSEVGCAMGCTFCATGTMGLSADLTAGEIVEQLVHASSV 166

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
                               +I NIV MGMGEPL N++ V+ ++ + +D    +  +R++
Sbjct: 167 -------------------SRIQNIVFMGMGEPLNNYEAVRTAVRLMTDPSSFALRRRKV 207

Query: 218 TLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           T+ST G +P + ++ +++ GV LA+SLHA + +LR  +        LE            
Sbjct: 208 TVSTVGVIPRMLQMADDMPGVSLALSLHAPTQELRQTIY-------LE------------ 248

Query: 277 SNARRITFEYVMLK-GINDSPRDALNLIKILKGIPAKINLIPFNP--WPGCEYLCSDQKD 333
              +R+  EYVML   IN +   A  L ++L+G    +NLIP+NP   P   +   ++  
Sbjct: 249 RTGQRVFVEYVMLGPDINCTQAHAHQLGRLLQGRNVLVNLIPWNPILSPSITFAAPEEGA 308

Query: 334 IVTFSECIK-RSGYSSPIRTPRGLDILAACGQL 365
              F   ++ + G +  IR  +G DI  ACGQL
Sbjct: 309 TAAFHSILRYQYGVNCTIRAEKGQDISGACGQL 341


>gi|299116401|emb|CBN74666.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 598

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/211 (39%), Positives = 125/211 (59%), Gaps = 23/211 (10%)

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------EKSRGTLCVSSQVGCSLT 127
           E+ D +++ DGTRK L+       G   ++ETV IP       + R T+CVSSQVGC++ 
Sbjct: 187 ELEDVQLAADGTRK-LVSVLTSGEGAGKKVETVIIPMLRGPQREPRYTVCVSSQVGCAMN 245

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC+TG   L+ NL A +I+ QVL+A+  L         E +  PS    ++ +V MGM
Sbjct: 246 CQFCFTGRLGLMANLQAAQIVEQVLVAKRYL---------ETVGDPS---PVTGVVFMGM 293

Query: 188 GEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEI--GVMLAISLH 244
           GEP  N+D V +++ I +D   G+      +T+ST G VP I R  ++   G  LAISLH
Sbjct: 294 GEPFDNYDRVMRAVKILTDPRAGVRLKASSVTVSTVGLVPQIERFCKDPANGASLAISLH 353

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACR-HYP 274
           +V +++R+ L+P+NR+YPLE L +  R H+P
Sbjct: 354 SVVDEVRDKLIPVNRRYPLEQLSETLRTHFP 384



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 42/84 (50%)

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           +  EY +L G+NDS  DA  L + L+G+   +NLI FN   G  +  S  +    F   +
Sbjct: 486 LAVEYTLLGGVNDSLGDAGRLAEWLEGVACVVNLITFNAHAGTPFSPSSPEAAEAFRRAL 545

Query: 342 KRSGYSSPIRTPRGLDILAACGQL 365
              G     R  RG D +AACGQL
Sbjct: 546 AARGQLCTFRDSRGDDGMAACGQL 569


>gi|108761479|ref|YP_634582.1| ribosomal RNA large subunit methyltransferase N [Myxococcus xanthus
           DK 1622]
 gi|122980702|sp|Q1CYE1|Y6459_MYXXD RecName: Full=Probable RNA methyltransferase MXAN_6459
 gi|108465359|gb|ABF90544.1| radical SAM domain protein [Myxococcus xanthus DK 1622]
          Length = 358

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 165/360 (45%), Gaps = 37/360 (10%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL---LNQHFSII 71
           +ELE AL  +      VR    +++  ++  G +  + ++   Q  R +   L  H  + 
Sbjct: 9   QELEAALAPLSPSPAAVR----KVFAAVFAHGAQSVEDVASARQVPRRVGDHLRAHAEMP 64

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSF 130
              IV+ + + DG  K+L   P   +GG   IE V IP    +  +CVSSQVGC+L C F
Sbjct: 65  KLAIVERRRADDGFVKYLFDSP---LGG--RIEAVRIPIFDEKYVICVSSQVGCALACDF 119

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TG     RNL   EIL QVL  R                     R +  +V MGMGEP
Sbjct: 120 CMTGKLGFKRNLQTWEILDQVLQVRE-----------------EADRPVRGVVFMGMGEP 162

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSND 249
           L N+    ++  I     G S +   IT ST+G VP I R V E     LA S+ +   +
Sbjct: 163 LLNYKETLRAADILRHPAGFSIAGEAITFSTAGHVPAIRRYVREGHPYRLAFSVTSAIAE 222

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R  ++PI + +PL  LI A R Y  +   R +   YV + G N    DA  L    +GI
Sbjct: 223 KRAKVLPIEKTHPLPELIAAIREYSEVRRERAM-IAYVAISGFNMGREDAEALKVAFEGI 281

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAACGQLKS 367
             K++LI     P  +YL    +++  F + ++     SP+  R   G +I AACG L +
Sbjct: 282 RIKVDLIDVTD-PTGKYLPPTPEELSAFRDHLQI--LKSPVARRYSGGKEIGAACGTLAA 338


>gi|330503480|ref|YP_004380349.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
           mendocina NK-01]
 gi|328917766|gb|AEB58597.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
           mendocina NK-01]
          Length = 346

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 145/294 (49%), Gaps = 31/294 (10%)

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
           +  E    DG+ + L+    R +     +E+V +P   R  LC+SSQVGC++ C+FC TG
Sbjct: 67  VSTEHPGADGSSRLLVELADRQM-----VESVLLP---RDGLCISSQVGCAVGCTFCMTG 118

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L+R L++ E++ QV+L R                     R +  +V MGMGEP  N 
Sbjct: 119 KSGLLRQLSSAEMVAQVVLGRRR-------------------RAVKKVVFMGMGEPAHNL 159

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNI 253
           DNV +++ +     G+    R +  ST G      R+  + +   LA+SLH    +LR  
Sbjct: 160 DNVLEAIDLLGTEGGIGH--RNLVFSTVGDPRVFERLPRQRVRPALALSLHTTDAELRQR 217

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           L+P   +   E L++    Y    +   I +++ +LKGINDS ++  N++++ KG  A +
Sbjct: 218 LLPRAPRIDPEQLMELGEAYARAIDYP-IQYQWTLLKGINDSQQEMDNILRLFKGKFAVL 276

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           NLIP+N     EY   + + IV     +   G  + +R   G D+   CGQL++
Sbjct: 277 NLIPYNSLEADEYRRPEGERIVEMVRYLHSRGVLTKVRNSAGQDVDGGCGQLRA 330


>gi|258597636|ref|XP_001348239.2| radical SAM protein, putative [Plasmodium falciparum 3D7]
 gi|255528761|gb|AAN36678.2| radical SAM protein, putative [Plasmodium falciparum 3D7]
          Length = 362

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 173/381 (45%), Gaps = 47/381 (12%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ--HFSIIYPEIVD 77
           +L+K+   ++  + R  QI   IY   I +   M +I  E+R  L    H +I+  + + 
Sbjct: 9   SLIKMMERKKFEKYRLKQIMDNIYKGKIIEINKMKNIPTEIRRELKNIFHNNILSIKPIK 68

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
           E +  D   K L +    C     +IE   +   S  +LC+SSQ+GCS  C FC TG   
Sbjct: 69  E-LKYDRAYKVLFQ----CKDNE-KIEATSLDFGSHKSLCISSQIGCSFGCKFCATGQIG 122

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---F 194
           + R L  +EI  Q+L                     S G  I NI  MGMGEPL N   F
Sbjct: 123 IKRQLDIDEITDQLL------------------YFQSKGVDIKNISFMGMGEPLANPYVF 164

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNI 253
           D    S+   +D+   S S RRI +ST G +P I ++      V LA SLH+   + R+ 
Sbjct: 165 D----SIQFFNDNNLFSISNRRINISTVGLLPGIKKLNNIFPQVNLAFSLHSPFTEERDQ 220

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           LVPIN+ +P   + D        +  RR+   Y+++K +NDS   A  L   +   P  I
Sbjct: 221 LVPINKLFPFNEVFDLLDERIAKT-GRRVWISYILIKNLNDSKDHAEALSDHICKRPNNI 279

Query: 314 N------LIPFNPWPGCE---YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
                  LIP+N     +   +   D + I+ F + +K++G S   R   G  I AACGQ
Sbjct: 280 RYLYNVCLIPYNKAKNVDENFHRLDDAEKILQFEKILKKNGISFFYRNSFGYSIDAACGQ 339

Query: 365 LKSL---SKRIPKVPRQEMQI 382
           L +     KR  K+  + M +
Sbjct: 340 LYADYEPKKRKEKIESKNMSL 360


>gi|152984959|ref|YP_001348813.1| hypothetical protein PSPA7_3453 [Pseudomonas aeruginosa PA7]
 gi|205829651|sp|A6V6X8|Y3453_PSEA7 RecName: Full=Probable RNA methyltransferase PSPA7_3453
 gi|150960117|gb|ABR82142.1| hypothetical protein PSPA7_3453 [Pseudomonas aeruginosa PA7]
          Length = 346

 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 158/325 (48%), Gaps = 48/325 (14%)

Query: 51  QGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE 110
           QG+  +++E+  +   H          E  + DG+ + L+    R       +E+V +P 
Sbjct: 52  QGLPRVAEELEGIARLH---------SEHPASDGSSRLLVELADR-----QRVESVLLP- 96

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
             RG LCVS+QVGC++ C FC TG   L+R + + E++ QV+LAR               
Sbjct: 97  --RGGLCVSTQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR------------- 141

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                 R +  +V MGMGEP  N DNV +++ +     G+    + +  ST G      R
Sbjct: 142 ------RAVKKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIGH--KNLVFSTVGDPRVFER 193

Query: 231 V-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFE 285
           + G+ +   LA+SLH+   +LR  L+P       E L++A   Y     AR+    I ++
Sbjct: 194 LPGQRVKPALALSLHSTDAELRRRLLPKAPPLSPEELVEAGETY-----ARQVDYPIQYQ 248

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
           + +L+G+NDS  +   ++++LKG  A +NLIP+N   G  Y     + IV     +   G
Sbjct: 249 WTLLEGVNDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDAYRRPRGERIVELVRYLHSRG 308

Query: 346 YSSPIRTPRGLDILAACGQLKSLSK 370
             + +R   G DI   CGQL++ ++
Sbjct: 309 VLTKVRNSAGQDIDGGCGQLRARAE 333


>gi|327480837|gb|AEA84147.1| Fe-S-cluster redox protein [Pseudomonas stutzeri DSM 4166]
          Length = 342

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 147/296 (49%), Gaps = 31/296 (10%)

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
           E  + DG+ + L+      +G    +E+V +P   R  LCVSSQVGC++ C FC TG   
Sbjct: 70  EHPAADGSARLLVE-----LGDGQMVESVLLP---RDGLCVSSQVGCAVGCVFCMTGKSG 121

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
           L+R L + EI+ QV LAR                     R +  +V MGMGEP  N DNV
Sbjct: 122 LLRQLGSAEIVAQVALARRF-------------------RPVKKVVFMGMGEPAHNLDNV 162

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVP 256
            +++ +     G+    + +  ST G +    R+ ++ +   LA+SLH+    LR  L+P
Sbjct: 163 LEAIDLLGTEGGIGH--KNLVFSTVGDLRVFERLPQQRVKPALALSLHSTDGALRQALLP 220

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
              +   E L++    Y   +    I +++ +LKGIND+  +   ++++LKG  A +NLI
Sbjct: 221 RAPQIAPEELVELGETY-ARATGFPIQYQWTLLKGINDNQEEMDGILRLLKGKYAVMNLI 279

Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
           P+N      Y   + + IV     +   G  + +R   G DI   CGQL++ ++++
Sbjct: 280 PYNSLEDDAYQRPEGERIVQIVRYLHSRGVLTKVRNSAGQDIDGGCGQLRARAEQV 335


>gi|226945006|ref|YP_002800079.1| ribosomal RNA large subunit methyltransferase N [Azotobacter
           vinelandii DJ]
 gi|226719933|gb|ACO79104.1| Fe-S cluster redox enzyme, radical SAM family [Azotobacter
           vinelandii DJ]
          Length = 344

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 168/360 (46%), Gaps = 42/360 (11%)

Query: 16  ELEEALLKIGIPQRHV-RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII--Y 72
           +  + L  +G    H+ R+  + +  W    G R  Q    +   VR  + +  + +   
Sbjct: 5   DFHQRLADLGAKSPHIGRIDRAWLHGWPLDTGTRQQQARDFLPLGVREAMPELHATVAGL 64

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
             +  E  + DG+ + L+      +G    +E+V +P   R  LCVSSQVGC++ C FC 
Sbjct: 65  ARLRSEHPAADGSARLLVE-----LGDGQMVESVLLP---RDGLCVSSQVGCAVGCVFCM 116

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           TG   L+R L + EI+ QV LAR                     R +  +V MGMGEP  
Sbjct: 117 TGRSGLLRQLGSAEIVAQVALARRF-------------------RPVKKVVFMGMGEPAH 157

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251
           N DNV +++ +   + G+    + +  ST G      R+ +  +   LA+SLH+    LR
Sbjct: 158 NLDNVLEAIDLLGTAGGIGH--KNLVFSTVGDPRVFERLPQGRVKPALALSLHSSDAGLR 215

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGINDSPRDALNLIKILK 307
             L+P   +   + L++    Y     ARR    I +++ +L+GINDS  +   ++++L+
Sbjct: 216 RRLLPHAPRLDPQELVELAEAY-----ARRTGYPIQYQWTLLEGINDSLEEMDGILRLLR 270

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  A +NLIP+N     +Y   D + IV     +   G  + +R   G DI   CGQL++
Sbjct: 271 GKYAVMNLIPYNSLEADDYRRPDGERIVGLVRYLHGRGVLTKVRNSAGQDIDGGCGQLRA 330


>gi|146282579|ref|YP_001172732.1| Fe-S-cluster redox protein [Pseudomonas stutzeri A1501]
 gi|205829636|sp|A4VLN9|Y2231_PSEU5 RecName: Full=Probable RNA methyltransferase PST_2231
 gi|145570784|gb|ABP79890.1| predicted Fe-S-cluster redox enzyme [Pseudomonas stutzeri A1501]
          Length = 342

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 146/296 (49%), Gaps = 31/296 (10%)

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
           E  + DG+ + L+      +G    +E+V +P   R  LCVSSQVGC++ C FC TG   
Sbjct: 70  EHPAADGSARLLVE-----LGDGQMVESVLLP---RDGLCVSSQVGCAVGCVFCMTGKSG 121

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
           L+R L + EI+ QV LAR                     R +  +V MGMGEP  N DNV
Sbjct: 122 LLRQLGSAEIVAQVALARRF-------------------RPVKKVVFMGMGEPAHNLDNV 162

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVP 256
            +++ +     G+    + +  ST G +    R+ ++ +   LA+SLH+    LR  L+P
Sbjct: 163 LEAIDLLGTEGGIGH--KNLVFSTVGDLRVFERLPQQRVKPALALSLHSTDGALRQALLP 220

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
              +   E L++    Y   +    I +++ +LKGIND+  +   ++++LKG  A +NLI
Sbjct: 221 RAPQIAPEELVELGETY-ARATGFPIQYQWTLLKGINDNQEEMDGILRLLKGKYAVMNLI 279

Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
           P+N      Y   + + IV     +   G  + +R   G DI   CGQL++ ++ +
Sbjct: 280 PYNSLEDDAYQRPEGERIVQIVRYLHSRGVLTKVRNSAGQDIDGGCGQLRARAEHV 335


>gi|289524569|ref|ZP_06441423.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502191|gb|EFD23355.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 197

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 124/219 (56%), Gaps = 23/219 (10%)

Query: 38  IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI 97
           I +WIY + + DFQ M+++S+E+R  L     +  P +  E+ S DGT+K+L +F     
Sbjct: 1   ICQWIYQKKVFDFQEMTNLSKELRGKLADAVMVAPPILTREETSKDGTKKYLWQFH---- 56

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
                +E+V + ++ R T C+S+QVGC L C+FC +G    VR+L+A EI+ Q L    L
Sbjct: 57  -DGERVESVLLTQEGRLTACLSTQVGCPLACAFCASGQGGFVRDLSAGEIVGQFLAMEKL 115

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
                             GR I N+V MGMGEP  N ++V KS+ I ++        RRI
Sbjct: 116 -----------------AGRDIDNVVYMGMGEPFLNQESVFKSIKILNEPKMRGLGIRRI 158

Query: 218 TLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILV 255
           T+ST+G VP I  + E ++ V L++SLHA ++ LR+ L+
Sbjct: 159 TISTAGIVPGILALAEAQMPVKLSVSLHAPNDRLRSKLM 197


>gi|254240233|ref|ZP_04933555.1| hypothetical protein PA2G_00875 [Pseudomonas aeruginosa 2192]
 gi|126193611|gb|EAZ57674.1| hypothetical protein PA2G_00875 [Pseudomonas aeruginosa 2192]
          Length = 346

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 47/327 (14%)

Query: 60  VRHLLNQHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
           VRH L Q  + +     +  E  + DG+ + L+    R +     +E+V +P   RG LC
Sbjct: 50  VRHGLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQM-----VESVLLP---RGGLC 101

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VS+QVGC++ C FC TG   L+R + + E++ QV+LAR                     R
Sbjct: 102 VSTQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------R 142

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            +  +V MGMGEP  N DNV +++ +     G+    + +  ST G      R+  + + 
Sbjct: 143 AVKKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIGH--KNLVFSTVGDPRVFERLPRQRVK 200

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGI 292
             LA+SLH+   +LR  L+P       E L++A   Y     ARR    I +++ +L+GI
Sbjct: 201 PALALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAY-----ARRVDYPIQYQWTLLEGI 255

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           NDS  +   ++++LKG  A +NLIP+N   G  Y     + IV     +   G  + +R 
Sbjct: 256 NDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRN 315

Query: 353 PRGLDILAACGQLK------SLSKRIP 373
             G DI   CGQL+      ++ +RIP
Sbjct: 316 SAGQDIDGGCGQLRARATQGTVERRIP 342


>gi|218892205|ref|YP_002441072.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
 gi|218772431|emb|CAW28213.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
          Length = 346

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 47/327 (14%)

Query: 60  VRHLLNQHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
           VRH L Q  + +     +  E  + DG+ + L+    R +     +E+V +P   RG LC
Sbjct: 50  VRHGLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQM-----VESVLLP---RGGLC 101

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VS+QVGC++ C FC TG   L+R + + E++ QV+LAR                     R
Sbjct: 102 VSTQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------R 142

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            +  +V MGMGEP  N DNV +++ +     G+    + +  ST G      R+  + + 
Sbjct: 143 AVKKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIGH--KNLVFSTVGDPRVFERLPRQRVK 200

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGI 292
             LA+SLH+   +LR  L+P       E L++A   Y     ARR    I +++ +L+GI
Sbjct: 201 PALALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAY-----ARRVDYPIQYQWTLLEGI 255

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           NDS  +   ++++LKG  A +NLIP+N   G  Y     + IV     +   G  + +R 
Sbjct: 256 NDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRN 315

Query: 353 PRGLDILAACGQLK------SLSKRIP 373
             G DI   CGQL+      ++ +RIP
Sbjct: 316 SAGQDIDGGCGQLRARATQATVERRIP 342


>gi|332531263|ref|ZP_08407176.1| ribosomal RNA large subunit methyltransferase N [Hylemonella
           gracilis ATCC 19624]
 gi|332039370|gb|EGI75783.1| ribosomal RNA large subunit methyltransferase N [Hylemonella
           gracilis ATCC 19624]
          Length = 357

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 30/273 (10%)

Query: 103 IETVYIP---EKSRG-TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
           +E+V +P    + R  TLCVS+QVGC++ C FC TG   L+R L + EI+ QV LAR+  
Sbjct: 88  VESVLMPTAGSRQRAPTLCVSTQVGCAVGCVFCMTGRAGLIRQLGSAEIVAQVALARA-- 145

Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
                               +  +V MGMGEP  N DNV +++ +   +       + + 
Sbjct: 146 -----------------SATVRRVVFMGMGEPAHNLDNVLEAIDLLGTAG--DIGHKNLV 186

Query: 219 LSTSG----FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
            ST G    F    +R  +++   LA+SLH    DLR  L+P   +   E L+DA   Y 
Sbjct: 187 FSTVGDPRVFEALQSRGADQVRPALALSLHTTRADLRAQLLPRAPRLTPEELVDAGERYA 246

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334
            L+ A  I +++ +L GINDS  +   L+++L+G  A +NLIP+N      Y    Q+  
Sbjct: 247 RLT-AYPIQYQWTLLDGINDSDEEIEGLVRLLQGKYAILNLIPYNAVDDLPYRRPAQEAA 305

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           V  +  + + G  + +R   G D+   CGQL++
Sbjct: 306 VAMARRLHQRGILTKLRQSAGQDVDGGCGQLRA 338


>gi|298706960|emb|CBJ29779.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 531

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 138/280 (49%), Gaps = 43/280 (15%)

Query: 17  LEEALLKIGIPQRHVR-MRTSQIWKWIYVRGI-----RDFQGMSD------ISQEVRHLL 64
           L+EALL   + +  ++ +  + +W +    G        F G  D             LL
Sbjct: 13  LDEALLSAALREEGIKELHAASVWHYALSEGKLHGSDATFDGFEDGKFYMSAPAPTGPLL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS---RGTLCVSSQ 121
            + F+++   +V+ + S DGT K L+R     +     +ETV I       R TLCVSSQ
Sbjct: 73  RRKFAVLTSTVVETQRSEDGTVKLLVRLQDGQM-----VETVIIKHNGTHPRTTLCVSSQ 127

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C+FC TGT  L  +LTA EIL QVL A  +                     I N
Sbjct: 128 VGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRV-------------------SPIRN 168

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
           +V MGMGEPL N+D V  S+   +DS     S R ITLST G VP + ++  +     LA
Sbjct: 169 VVFMGMGEPLNNYDAVLASIRGMADSRMFKLSPRHITLSTVGVVPRMKQLTIDAPETQLA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLS 277
           +SLHA + +LRN +VP  R Y L+ L+DA   +   PG++
Sbjct: 229 LSLHAPNQELRNRIVPSARAYRLDKLMDALDGHLRGPGVA 268



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP--WPGC-EYLCSDQ 331
           G    RR   EYVML G+ND+      L ++LKG    +NLIP+NP   PG  E+    +
Sbjct: 332 GRGAGRRALIEYVMLAGVNDTEECGRELGELLKGRNVLVNLIPYNPTYAPGSEEFKEPTE 391

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           + +  F   +   G    IR   G DI  ACGQL
Sbjct: 392 EALQKFRAIVHEHGLLVTIRRHHGRDIDGACGQL 425


>gi|254234935|ref|ZP_04928258.1| hypothetical protein PACG_00810 [Pseudomonas aeruginosa C3719]
 gi|126166866|gb|EAZ52377.1| hypothetical protein PACG_00810 [Pseudomonas aeruginosa C3719]
          Length = 346

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 47/327 (14%)

Query: 60  VRHLLNQHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
           VRH L Q  + +     +  E  + DG+ + L+    R +     +E+V +P   RG LC
Sbjct: 50  VRHGLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQM-----VESVLLP---RGGLC 101

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VS+QVGC++ C FC TG   L+R + + E++ QV+LAR                     R
Sbjct: 102 VSTQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------R 142

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            +  +V MGMGEP  N DNV +++ +     G+    + +  ST G      R+  + + 
Sbjct: 143 AVKKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIGH--KNLVFSTVGDPRVFERLPRQRVK 200

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGI 292
             LA+SLH+   +LR  L+P       E L++A   Y     ARR    I +++ +L+GI
Sbjct: 201 PALALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAY-----ARRVDYPIQYQWTLLEGI 255

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           NDS  +   ++++LKG  A +NLIP+N   G  Y     + IV     +   G  + +R 
Sbjct: 256 NDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRN 315

Query: 353 PRGLDILAACGQLKSLS------KRIP 373
             G DI   CGQL++ +      +RIP
Sbjct: 316 SAGQDIDGGCGQLRARAAQGTAERRIP 342


>gi|15597036|ref|NP_250530.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
           aeruginosa PAO1]
 gi|107101272|ref|ZP_01365190.1| hypothetical protein PaerPA_01002306 [Pseudomonas aeruginosa PACS2]
 gi|313110540|ref|ZP_07796425.1| hypothetical protein PA39016_002410127 [Pseudomonas aeruginosa
           39016]
 gi|81622417|sp|Q9I2Q6|Y1839_PSEAE RecName: Full=Probable RNA methyltransferase PA1839
 gi|9947826|gb|AAG05228.1|AE004610_1 hypothetical protein PA1839 [Pseudomonas aeruginosa PAO1]
 gi|310882927|gb|EFQ41521.1| hypothetical protein PA39016_002410127 [Pseudomonas aeruginosa
           39016]
          Length = 346

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 47/327 (14%)

Query: 60  VRHLLNQHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
           VRH L Q  + +     +  E  + DG+ + L+    R +     +E+V +P   RG LC
Sbjct: 50  VRHGLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQM-----VESVLLP---RGGLC 101

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VS+QVGC++ C FC TG   L+R + + E++ QV+LAR                     R
Sbjct: 102 VSTQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------R 142

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            +  +V MGMGEP  N DNV +++ +     G+    + +  ST G      R+  + + 
Sbjct: 143 AVKKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIGH--KNLVFSTVGDPRVFERLPRQRVK 200

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGI 292
             LA+SLH+   +LR  L+P       E L++A   Y     ARR    I +++ +L+GI
Sbjct: 201 PALALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAY-----ARRVDYPIQYQWTLLEGI 255

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           NDS  +   ++++LKG  A +NLIP+N   G  Y     + IV     +   G  + +R 
Sbjct: 256 NDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRN 315

Query: 353 PRGLDILAACGQLKSLS------KRIP 373
             G DI   CGQL++ +      +RIP
Sbjct: 316 SAGQDIDGGCGQLRARATQGTAERRIP 342


>gi|296389768|ref|ZP_06879243.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
           aeruginosa PAb1]
          Length = 346

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 47/327 (14%)

Query: 60  VRHLLNQHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
           VRH L Q  + +     +  E  + DG+ + L+    R +     +E+V +P   RG LC
Sbjct: 50  VRHGLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQM-----VESVLLP---RGGLC 101

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VS+QVGC++ C FC TG   L+R + + E++ QV+LAR                     R
Sbjct: 102 VSTQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------R 142

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
            +  +V MGMGEP  N DNV +++ +     G+    + +  ST G      R+  + + 
Sbjct: 143 AVKKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIGH--KNLVFSTVGDPRVFERLPRQRVK 200

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGI 292
             LA+SLH+   +LR  L+P       E L++A   Y     ARR    I +++ +L+GI
Sbjct: 201 PALALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAY-----ARRVDYPIQYQWTLLEGI 255

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           NDS  +   ++++LKG  A +NLIP+N   G  Y     + IV     +   G  + +R 
Sbjct: 256 NDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRN 315

Query: 353 PRGLDILAACGQLKSLS------KRIP 373
             G DI   CGQL++ +      +RIP
Sbjct: 316 SAGQDIDGGCGQLRARATQGTAERRIP 342


>gi|116049791|ref|YP_791402.1| hypothetical protein PA14_40730 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122258902|sp|Q02KY4|Y4073_PSEAB RecName: Full=Probable RNA methyltransferase PA14_40730
 gi|115585012|gb|ABJ11027.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 346

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 47/327 (14%)

Query: 60  VRHLLNQHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
           VRH L Q  + +     +  E  + DG+ + L+    R +     +E+V +P   RG LC
Sbjct: 50  VRHGLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQM-----VESVLLP---RGGLC 101

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VS+QVGC++ C FC TG   L+R + + E++ QV+LAR                     R
Sbjct: 102 VSTQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------R 142

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIG 236
            +  +V MGMGEP  N DNV +++ +     G+    + +  ST G      R+  + + 
Sbjct: 143 AVKKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIGH--KNLVFSTVGDPRVFERLPLQRVK 200

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGI 292
             LA+SLH+   +LR  L+P       E L++A   Y     ARR    I +++ +L+GI
Sbjct: 201 PALALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAY-----ARRVDYPIQYQWTLLEGI 255

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           NDS  +   ++++LKG  A +NLIP+N   G  Y     + IV     +   G  + +R 
Sbjct: 256 NDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRN 315

Query: 353 PRGLDILAACGQLKSLS------KRIP 373
             G DI   CGQL++ +      +RIP
Sbjct: 316 SAGQDIDGGCGQLRARATQGTAERRIP 342


>gi|146307182|ref|YP_001187647.1| radical SAM domain-containing protein [Pseudomonas mendocina ymp]
 gi|205829635|sp|A4XU99|Y2155_PSEMY RecName: Full=Probable RNA methyltransferase Pmen_2155
 gi|145575383|gb|ABP84915.1| Radical SAM domain protein [Pseudomonas mendocina ymp]
          Length = 346

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 142/291 (48%), Gaps = 31/291 (10%)

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
           E    DG+ + L+    + +     +E+V +P   R  LC+SSQVGC++ C FC TG   
Sbjct: 70  EHPGADGSARLLVELADKQM-----VESVLLP---RDGLCISSQVGCAVGCVFCMTGKSG 121

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
           L+R L++ E++ QV L R                     R +  +V MGMGEP  N DNV
Sbjct: 122 LLRQLSSAEMVAQVALGRRF-------------------RPVKKVVFMGMGEPAHNLDNV 162

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVP 256
            +++ +     G+    + +  ST G      R+ ++ +   LA+SLH    +LR  L+P
Sbjct: 163 LEAIDLLGTEGGIGH--KNLVFSTVGDPRVFERLPQQRVRPALALSLHTTDAELRQRLLP 220

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
              +   E L++    Y   S    I +++ +LKGINDS ++  N++++ KG  A +NLI
Sbjct: 221 KAPRIDPEQLMELGEAY-ARSIDYPIQYQWTLLKGINDSQQEMDNILRLFKGKFAVLNLI 279

Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           P+N      Y   D + IV     +   G  + +R   G DI   CGQL++
Sbjct: 280 PYNSLDADNYQRPDGERIVQMVRYLHSRGVLTKVRNSAGQDIDGGCGQLRA 330


>gi|222624395|gb|EEE58527.1| hypothetical protein OsJ_09817 [Oryza sativa Japonica Group]
          Length = 356

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 126/236 (53%), Gaps = 23/236 (9%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P   R TLCVSSQVGC + C FC TGT     NL++ EI                   +E
Sbjct: 126 PGGVRSTLCVSSQVGCKMGCRFCATGTMGFKSNLSSGEI-------------------VE 166

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
            +V  S   +I N+V MGMGEPL N+  + +++ +   S     S +RIT+ST G + +I
Sbjct: 167 QLVHASRYSQIRNVVFMGMGEPLNNYTALVEAIQVLIGS-PFQLSPKRITVSTVGIIHSI 225

Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            +   ++  + LA+SLHA   D+R  ++P  R +PL  L++A + Y   S  + I  EY+
Sbjct: 226 NKFNNDLPNINLAVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNESK-QTIFIEYI 284

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNP-WPGCEYLCSDQKDIVTFSECIK 342
           ML G+ND  + A  L K+L+   A +NLIPFNP      +  S + ++  F + ++
Sbjct: 285 MLDGVNDQEQHAHQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILR 340


>gi|82523823|emb|CAI78565.1| hypothetical protein [uncultured candidate division OP8 bacterium]
          Length = 365

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 175/364 (48%), Gaps = 49/364 (13%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKW-IYVRGIRDFQG--MSDISQEVRHLLNQHFSIIY 72
           EL  AL   G+  R  R   + + K   + R + +     ++ I +EVR           
Sbjct: 32  ELHAALAPEGVSLRLARRLQAAVLKRDAFPRTLPEVSDKMLARIREEVR----------L 81

Query: 73  PEIV--DEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-----TLCVSSQVGC 124
           P++V  D+ +S  DG  K+L +       GP   E V IP   R        C+SSQVGC
Sbjct: 82  PKLVLKDKAVSARDGFAKYLFQG-----DGPEPFEAVRIPLLHRSGDEKYIACLSSQVGC 136

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG    VRNL+A E++ QV+   +         D E          I   V 
Sbjct: 137 ALGCAFCATGRMGFVRNLSAWEMVDQVIRLSA---------DSE--------HPIRGAVF 179

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISL 243
           MGMGEP+ N++ V ++  I  +  GL+ S + +++ST+G VP I R   + +   L +SL
Sbjct: 180 MGMGEPMLNYEAVVRAARILCEPCGLAVSAKAVSISTAGVVPGIRRFTADRLPFRLVVSL 239

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
            +  +  R  ++P+ + YPL  L++A R Y   S+ +R+   + M+ G N    DA+ L 
Sbjct: 240 TSADSARRREVMPLEQAYPLTDLMEAVREYHK-SSGQRVILAWTMISGFNTREEDAVQLA 298

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAA 361
            +++G+P +++LI  N   G  +      ++  F + + +     P+  R   G DI AA
Sbjct: 299 ALVRGLPIRLDLIDVNDATG-RFKPPSSLELHEFRDALSKH-LKMPVARRYSGGKDIRAA 356

Query: 362 CGQL 365
           CG L
Sbjct: 357 CGML 360


>gi|222619965|gb|EEE56097.1| hypothetical protein OsJ_04941 [Oryza sativa Japonica Group]
          Length = 363

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 164/374 (43%), Gaps = 70/374 (18%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67
           L+G+   +L +  + +G        R  Q+   +Y    +  Q  S + +  R  L+   
Sbjct: 36  LLGLSEPDLRQLAVDLG----QQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFREALVGAG 91

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGTLCVSSQV 122
           + +    +     + DGT K LL+     +     IETV IP       SR T CVSSQV
Sbjct: 92  WKVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDKGPSRLTACVSSQV 146

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L CSFC TG     RNL A EI+ QVL                  +  +   +++N+
Sbjct: 147 GCPLRCSFCATGKGGFARNLHAHEIVEQVL-----------------AIEETFQHRVTNV 189

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V MGMGEP+ N  +V ++    +    L   +R IT+ST G    I ++   ++   LA+
Sbjct: 190 VFMGMGEPMLNLKSVLEAHRCLNKE--LKIGQRMITISTVGVPSTIKKLASHKLQSTLAV 247

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +  LR  +VP                                  GIND+   A  
Sbjct: 248 SLHAPNQKLRETIVPT---------------------------------GINDAKEHAEE 274

Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L ++L   G    +NLIP+NP  G EY    +K +  F + ++    +  +R  RGLD  
Sbjct: 275 LAELLHTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDAN 334

Query: 360 AACGQLKSLSKRIP 373
           AACGQL++  ++ P
Sbjct: 335 AACGQLRNEFQKNP 348


>gi|162452171|ref|YP_001614538.1| hypothetical protein sce3898 [Sorangium cellulosum 'So ce 56']
 gi|205829653|sp|A9EPV3|Y3898_SORC5 RecName: Full=Probable RNA methyltransferase sce3898
 gi|161162753|emb|CAN94058.1| hypothetical protein sce3898 [Sorangium cellulosum 'So ce 56']
          Length = 393

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 141/292 (48%), Gaps = 37/292 (12%)

Query: 103 IETVYIP--EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           +E+V IP     R + CVSSQVGC+L C+FC TG   L RNL A EI+ QV L R     
Sbjct: 81  VESVRIPLERPGRYSACVSSQVGCALACAFCATGRMGLTRNLEAWEIVEQVRLIR----- 135

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
                D++  V    G ++  ++  GMGEPL N D V +++ + S+    +   R IT+ 
Sbjct: 136 ----RDLDATV--GGGARVHGVLFQGMGEPLANADRVIQAIRVLSEPSAQAIDMRNITVC 189

Query: 221 TSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T+G    I R+  E+  V L +SL +V    R +L+PI+  +PLE ++ A   +   ++ 
Sbjct: 190 TAGLPSGIRRLAAEVPAVRLGLSLGSVRPGKRRLLMPIDGAHPLEEVLAAVGEH-ARASG 248

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPA------KINLIPFNP--WPGCEYLCSDQ 331
               + Y +L   ND+  DA  L  + +G  A      +++LIP+N    PG      D 
Sbjct: 249 HAPMWAYTLLADQNDTDEDAACLAALARGFAAQHGISPRLSLIPYNAIGAPGDPLPSPDG 308

Query: 332 KD--------------IVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
            D              +  F   +  +G  S +R   G D+ AACGQL   S
Sbjct: 309 GDERGASADPFVRSARLDAFRAVLSAAGVGSIVRYSGGGDVGAACGQLARPS 360


>gi|319795747|ref|YP_004157387.1| radical SAM protein [Variovorax paradoxus EPS]
 gi|315598210|gb|ADU39276.1| Radical SAM domain protein [Variovorax paradoxus EPS]
          Length = 356

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 132/266 (49%), Gaps = 26/266 (9%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +P   R  LCVSSQVGC++ C FC TG   L+R + + EI+ QV LAR+      
Sbjct: 88  VESVLLP---RDGLCVSSQVGCAVGCQFCMTGRDGLLRQVGSAEIIAQVALARTR----- 139

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         RK+  +V MGMGEP  N DNV +++ +   ++G +   + +  ST 
Sbjct: 140 --------------RKVRKVVFMGMGEPAHNLDNVMEAIELLG-TVG-NIGHKNLVFSTV 183

Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G      R+ +E +   LA+SLH     LR  L+P       E L+DA   Y   +    
Sbjct: 184 GDPRAFERLQQERVKPALALSLHTTKAGLRKTLLPRAPNMTPEELVDAGERY-ARATGYP 242

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           I +++ +L+G+ND   +   ++K+L G    +N+IPFN   G  +     +     +  +
Sbjct: 243 IQYQWALLEGVNDGQDEIEGIVKLLSGKYGVLNMIPFNAVEGVAFSRPSWERCEAMARTL 302

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKS 367
            + G  + +R   G D+   CGQL++
Sbjct: 303 HQRGILTKLRDSAGQDVDGGCGQLRA 328


>gi|154685028|ref|YP_001420189.1| florfenicol/chloramphenicol resistance like protein [Bacillus
           amyloliquefaciens FZB42]
 gi|205829624|sp|A7Z1T2|CFR_BACA2 RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|154350879|gb|ABS72958.1| florfenicol/chloramphenicol resistance like protein [Bacillus
           amyloliquefaciens FZB42]
          Length = 349

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 171/343 (49%), Gaps = 35/343 (10%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLR 91
            R +QI   ++   I  F  ++ + + +R LL + F      I   K+   +   K L  
Sbjct: 22  FRMNQIKNAVFQGRINHFNEITVLPKSLRKLLIEEFGESILNIAPLKVQHSEQVTKVLFE 81

Query: 92  FPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
                I G  +IETV +  K+   + C+SSQ GC   C FC TG   L RNLT++E+  Q
Sbjct: 82  -----ISGDEKIETVNMKYKAGWESFCISSQCGCHFGCKFCATGDIGLKRNLTSDEMTDQ 136

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           +L                       G  I +I  MGMGE L N   V  +L + ++    
Sbjct: 137 ILY------------------FHLKGHSIDSISFMGMGEALANVQ-VFDALHVLTNPELF 177

Query: 211 SFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           + S RR+++ST G +P I ++ ++   V L  SLH+  N+ R+ L+PIN +YPL  ++D 
Sbjct: 178 ALSPRRLSISTIGIIPGIKKITQDYPQVNLTFSLHSPFNEQRSKLMPINERYPLLEVMDT 237

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-----KGIPAKINLIPFNPWPGC 324
              +  ++ +R++   Y+ML G+NDS   A  ++ +L     +G    +N+I +NP    
Sbjct: 238 LDEHIRVT-SRKVYIAYIMLPGVNDSIDHANEVVNLLRSRYKRGNLFHVNIIRYNPTVSS 296

Query: 325 --EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              +   ++K +V F + +K +G +  +R+  G+DI AACGQL
Sbjct: 297 PMRFEEVNEKQVVNFYKKLKSAGINVTVRSQFGIDIDAACGQL 339


>gi|313620442|gb|EFR91829.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
           FSL S4-378]
          Length = 180

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 108/169 (63%), Gaps = 7/169 (4%)

Query: 215 RRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
           R IT+STSG  P I     E+  V LAISLHA +N+LR  ++ IN+ Y +E L++A  +Y
Sbjct: 4   RHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYY 63

Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSD 330
              +N RRITFEY+MLKG+ND  ++AL L  +L      A +NLIP+NP     +Y  S 
Sbjct: 64  VNKTN-RRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERST 122

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
           ++D++ F + +K++G +  IR   G DI AACGQL+  SK+I +V  +E
Sbjct: 123 KEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLR--SKQIKRVGVRE 169


>gi|313624986|gb|EFR94881.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
           FSL J1-023]
          Length = 179

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 108/169 (63%), Gaps = 7/169 (4%)

Query: 215 RRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
           R IT+STSG  P I     E+  V LAISLHA +N+LR  ++ IN+ Y +E L++A  +Y
Sbjct: 3   RHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYY 62

Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSD 330
              +N RRITFEY+MLKG+ND  ++AL L  +L      A +NLIP+NP     +Y  S 
Sbjct: 63  VNKTN-RRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERST 121

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
           ++D++ F + +K++G +  IR   G DI AACGQL+  SK+I +V  +E
Sbjct: 122 KEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLR--SKQIKRVGVRE 168


>gi|311106735|ref|YP_003979588.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310761424|gb|ADP16873.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
           xylosoxidans A8]
          Length = 351

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 133/266 (50%), Gaps = 26/266 (9%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +P   R  LCVS+QVGC++ C FC TG   L+R +T+ EIL QV+LAR       
Sbjct: 89  VESVLLP---RDGLCVSTQVGCAVGCRFCMTGKSGLIRQVTSMEILAQVVLARR------ 139

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         R +  +V MGMGEP  N DNV +++ +       +   + +  ST 
Sbjct: 140 -------------QRAVKKVVFMGMGEPAHNLDNVLEAIDLLGTEG--NIGHKNLVFSTV 184

Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G +     + ++ +   LA+SLH    +LR  L+P   +   E LI+    Y   ++   
Sbjct: 185 GDLRVFEALPQQRVKPALALSLHTTKAELRAHLLPRAPRIAPEELIELGERYARDTDY-P 243

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           I +++ +LK IND   +   ++++LKG    +N+IPFN   G +Y   D + I      +
Sbjct: 244 IQYQWTLLKDINDGDDELDAVVRLLKGKYGVLNVIPFNSLEGDDYQRPDTERIHEIVRSL 303

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKS 367
           +  G  + +R   G D+   CGQL++
Sbjct: 304 QSRGVLTKVRNSAGQDVDGGCGQLRA 329


>gi|71906796|ref|YP_284383.1| radical SAM family protein [Dechloromonas aromatica RCB]
 gi|123733307|sp|Q47GW8|Y1157_DECAR RecName: Full=Probable RNA methyltransferase Daro_1157
 gi|71846417|gb|AAZ45913.1| Radical SAM [Dechloromonas aromatica RCB]
          Length = 357

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 137/268 (51%), Gaps = 30/268 (11%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +P   R  LC+S+Q+GC++ C+FC TG   L+R +++ E++ QV+L R       
Sbjct: 90  VESVLLP---RDGLCISTQIGCAVGCTFCMTGRDGLLRQVSSAEMVAQVVLGRGR----- 141

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL--SFSKRRITLS 220
                         RK++ +V MGMGEP  N DNV +++    D++G       + +  S
Sbjct: 142 --------------RKVTRVVFMGMGEPSHNMDNVLEAI----DTLGTYGGIGHKNLVFS 183

Query: 221 TSGFVPNIARVGEEIGV-MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T G      R+ ++  V  LA+SLH+   +LR  L+P         L++   HY   +  
Sbjct: 184 TVGDRRVFDRLPQQRVVPALALSLHSTRAELRAELLPKAPHIDPTELVELAEHY-ARTTG 242

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339
             I +++ ++ GINDS  +   ++++L G  A +NLIP+N     +Y     + I T ++
Sbjct: 243 YPIQYQWTLIDGINDSIEEMDGIVRLLTGKYAIMNLIPYNATATLDYRRPSLEHITTLTK 302

Query: 340 CIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +   G  + +R   G D+   CGQL++
Sbjct: 303 YLHAKGIRTTVRNSAGQDVDGGCGQLRA 330


>gi|224003013|ref|XP_002291178.1| hypothetical protein THAPSDRAFT_34735 [Thalassiosira pseudonana
           CCMP1335]
 gi|220972954|gb|EED91285.1| hypothetical protein THAPSDRAFT_34735 [Thalassiosira pseudonana
           CCMP1335]
          Length = 284

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 152/302 (50%), Gaps = 26/302 (8%)

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGCSL 126
           F+ +  ++   + S DG+     +       G V +E+V +    SR TLCVSSQVGC++
Sbjct: 1   FATLTSKVQSYRTSKDGSTT---KIAVELQDGHV-VESVLMRHAGSRATLCVSSQVGCAM 56

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG-DFPGCEDIEGMVIPSVGRKISNIVMM 185
            C+FC TGT  +  NLT+ EIL Q++ A  +L  D                  I N+V M
Sbjct: 57  GCTFCATGTMGIRGNLTSGEILEQLVHASRILAFDL-----------------IRNVVFM 99

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           GMGEPL N+ NV  +     D    + +  R+T+ST G V  I  +  ++  V LA+SLH
Sbjct: 100 GMGEPLNNYANVLAACRAMIDRRLWNLAHNRVTVSTVGVVSRIRDLTRDLPEVNLALSLH 159

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +  +R  +VP  +  P+E LI+A   +  ++  +R   EYVML+G   +   A  L +
Sbjct: 160 APNQKMREAIVPAAKGTPIESLIEALDAHM-MAKKKRAMIEYVMLEGDTSTIEAAHQLGQ 218

Query: 305 ILKGIPAKINLIPFNPWPGCEYL-CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + +G    +NLIP+N     + L C  ++ +  F   +   G    IR   G DI  ACG
Sbjct: 219 LCRGRQLVVNLIPYNKTDVRDKLSCPSEEHMQEFRSIVSSYGSFCSIRRTMGADIAGACG 278

Query: 364 QL 365
           QL
Sbjct: 279 QL 280


>gi|159479394|ref|XP_001697778.1| hypothetical protein CHLREDRAFT_120230 [Chlamydomonas reinhardtii]
 gi|158274146|gb|EDO99930.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 239

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 122/249 (48%), Gaps = 23/249 (9%)

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC+TG + L+ NL+  +I+ Q                            I+N+V M
Sbjct: 1   MNCQFCFTGRRGLLGNLSTAQIIEQPQPRPQ--------------QSQQAPPPITNLVFM 46

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-------GEEIGVM 238
           GMGEPL N   V  ++ I +   GL+ S  R+TLST G +P +          G    V 
Sbjct: 47  GMGEPLHNPTAVFAAIDILAHRHGLAMSPSRVTLSTVGLLPQLQHFLDSSRGEGGRARVC 106

Query: 239 LAISLHAVSNDLRNILVPINRKY--PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           LA+S+HA +++LR  +VP N +   P      +      L   R + FEY +L+G+ND P
Sbjct: 107 LAVSIHAGTDELRGAIVPSNTRLSLPPAGFSPSNNTIRPLRAGRYVLFEYTLLRGVNDRP 166

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
            DA  L++  K I    NLI FNP+PG  Y  S  + ++ F + +  +G    +R  +G 
Sbjct: 167 EDAAALLEATKDIECSFNLIMFNPFPGTLYSPSTPERLLAFQKVLWAAGRIVHVRLSKGD 226

Query: 357 DILAACGQL 365
           D +AACGQL
Sbjct: 227 DGMAACGQL 235


>gi|171059188|ref|YP_001791537.1| ribosomal RNA large subunit methyltransferase N [Leptothrix
           cholodnii SP-6]
 gi|205829631|sp|B1Y6D6|Y2507_LEPCP RecName: Full=Probable RNA methyltransferase Lcho_2507
 gi|170776633|gb|ACB34772.1| Radical SAM domain protein [Leptothrix cholodnii SP-6]
          Length = 347

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 132/270 (48%), Gaps = 34/270 (12%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +P   R  LCVS+QVGC++ C FC TG + L+R + + EI+ QV+LAR       
Sbjct: 88  VESVLLP---RDGLCVSTQVGCAVGCVFCMTGREGLLRQVGSAEIVAQVVLARR------ 138

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         R +  +V MGMGEP  N DNV +++     +   +   + +  ST 
Sbjct: 139 -------------QRLVKKVVFMGMGEPAHNLDNVMEAIDFLGTTG--AIGHKNLVFSTV 183

Query: 223 GFVPNIARVGEEIGV-----MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
           G      RV E + +      LA+SLH    DLR  L+P   +     L++    Y   +
Sbjct: 184 GD----PRVFERLPLGPVKPALALSLHTTRADLRAQLLPRAPRMDPADLVERAEAY-ARA 238

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
            +  I +++ +L+GIND P +   ++++L G  A +N+IP+N  P   Y     +     
Sbjct: 239 TSYPIQYQWTLLEGINDGPDEVEGIVRLLHGKYAVLNMIPYNTVPDLPYTRPSWEAAAAL 298

Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           +  + R G  + +R   G D+   CGQL++
Sbjct: 299 ARTLHRRGILTKLRQSAGQDVEGGCGQLRA 328


>gi|255017664|ref|ZP_05289790.1| hypothetical protein LmonF_07755 [Listeria monocytogenes FSL
           F2-515]
          Length = 218

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 132/241 (54%), Gaps = 26/241 (10%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+    L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  +F  + +  ++V E  S DGT K+L +     +     IETV + ++   ++CV++Q
Sbjct: 57  LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  K  R+LTA EI+ Q++  +  L D    E+           ++S+
Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
           +V+MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LA
Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217

Query: 241 I 241
           I
Sbjct: 218 I 218


>gi|224014863|ref|XP_002297093.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968212|gb|EED86561.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 319

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/324 (32%), Positives = 155/324 (47%), Gaps = 57/324 (17%)

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------------EKS-----RGTLC 117
           +V    S DGT K LLR     + G +E+ETV IP            EK      R T+C
Sbjct: 20  LVHTSTSSDGTTKLLLRL----MDG-LEVETVLIPFWADVAQKKRINEKDNSSLGRTTVC 74

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +SSQVGC   C+FC TG    +R+LT +EIL Q+  A+ ++           +V+P    
Sbjct: 75  ISSQVGCRQGCTFCATGRMGKLRSLTTDEILAQLFYAKKVV----------RVVLPP--- 121

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            I+NIV MGMG+   N D VK +++I +      FS  R+T+ST    P       +   
Sbjct: 122 -ITNIVAMGMGDAADNVDAVKGAINIMTRRELFQFSASRVTVSTVAPSPQAFLDFADSKC 180

Query: 238 MLAISLHAVSNDLRNILVPINRKYPL----EMLIDACRHYPGLSNARRITFEYVMLKGIN 293
           +LA S+HA  ++LR  LVP   KYP+    + LIDA +        R    E  ++ G+N
Sbjct: 181 ILAWSVHATRDELRKQLVPTT-KYPMVELRQGLIDALKQ----RKLRTCMIEVALMDGVN 235

Query: 294 DSPRDALNLIKILKGIPAKI-------NLIPFN-----PWPGCEYLCSDQKDIVTFSECI 341
           DS R+A  L + L  I  ++       NLIP+N           Y     + ++ F + +
Sbjct: 236 DSMREAEELAEFLTYITNEVPGSKLLCNLIPYNDIGEGAGGVVAYRKPSMEKVMAFQKRL 295

Query: 342 KRSGYSSPIRTPRGLDILAACGQL 365
           +     + +R  RG +  +ACGQL
Sbjct: 296 QELSVYAHVRGTRGDEENSACGQL 319


>gi|224825445|ref|ZP_03698550.1| Radical SAM domain protein [Lutiella nitroferrum 2002]
 gi|224602366|gb|EEG08544.1| Radical SAM domain protein [Lutiella nitroferrum 2002]
          Length = 354

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 130/271 (47%), Gaps = 36/271 (13%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +P   R  LCVSSQVGC++ C+FC TG   L+R L + EI  QV LAR +     
Sbjct: 90  VESVLLP---RDGLCVSSQVGCAVGCTFCMTGKSGLLRQLGSAEIAAQVALARRI----- 141

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-IASDSMGLSFSKRRITLST 221
                         R +  +V MGMGEP  N DNV  ++  + SD        + + LST
Sbjct: 142 --------------RPVKKVVFMGMGEPAHNLDNVLDAIDLLGSDG---HIGHKNLVLST 184

Query: 222 SGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
            G      R+ ++ +   LA+SLH    +LR  L+P   +Y    L+     Y     AR
Sbjct: 185 VGDPRVFERLPQQHVKPALALSLHTTRAELRAQLLPRAPRYDPAELVALGEDY-----AR 239

Query: 281 R----ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
           R    I +++ +L G+ND+  +    +++LKG    +N+IP+N   G  Y     + I  
Sbjct: 240 RVGYPIQYQWTLLAGVNDTQEEMDAAVRLLKGKYGVLNIIPYNSVEGDHYQRPSAERIHL 299

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
               +   G  + +R   G DI   CGQL++
Sbjct: 300 MKRYLHDHGVLTKVRDSAGQDIDGGCGQLRA 330


>gi|317405650|gb|EFV85949.1| ribosomal RNA large subunit methyltransferase N 1 [Achromobacter
           xylosoxidans C54]
          Length = 348

 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 135/277 (48%), Gaps = 28/277 (10%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +P   R  LCVS+QVGC++ C FC TG   L+R + + EIL QV+LAR       
Sbjct: 89  VESVLLP---RDGLCVSTQVGCAVGCRFCMTGKSGLIRQVASMEILAQVVLARRQ----- 140

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         R +  +V MGMGEP  N DNV +++++       +   + +  ST 
Sbjct: 141 --------------RAVKKVVFMGMGEPAHNLDNVLEAINLLGTEG--NIGHKNLVFSTV 184

Query: 223 GFVPNI--ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
           G  P +  A   + +   LA+SLH    +LR  L+P   K   + L++    Y       
Sbjct: 185 GD-PRVFEALPRQPVKPALALSLHTTRAELREHLLPRAPKIAPQDLVEMGERY-ARDTGY 242

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSEC 340
            I +++ +LKG+ND   +   + ++LKG    +N+IPFN   G +Y   + + I      
Sbjct: 243 PIQYQWTLLKGVNDGDDELDAIPRLLKGKFGVLNVIPFNSLEGDDYQRPETERIREIVRI 302

Query: 341 IKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
           + R G  + +R   G D+   CGQL++ +    +V R
Sbjct: 303 LHRRGVLTKVRNSAGQDVDGGCGQLRARAVGAERVVR 339


>gi|332527662|ref|ZP_08403707.1| ribosomal RNA large subunit methyltransferase N [Rubrivivax
           benzoatilyticus JA2]
 gi|332112064|gb|EGJ12040.1| ribosomal RNA large subunit methyltransferase N [Rubrivivax
           benzoatilyticus JA2]
          Length = 351

 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 136/286 (47%), Gaps = 31/286 (10%)

Query: 83  DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142
           DG  + L+      +G    +E+V +P   R  LCVS+QVGC++ C FC TG   L+R L
Sbjct: 83  DGAERLLV-----GLGDGQTVESVLLP---RDGLCVSTQVGCAVGCVFCMTGRDGLLRQL 134

Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202
            + EI+ QV+LAR                     R +S +V MGMGEP  N D V +++ 
Sbjct: 135 GSAEIVAQVVLARQR-------------------RSVSKVVFMGMGEPSHNLDAVLEAID 175

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKY 261
           +   + G+    + +  ST G      R+    +   LA+SLH    +LR  L+P   K 
Sbjct: 176 LLGTAGGIGH--KNLVFSTVGDTRAFERLPLGRVKPALALSLHTTKAELRERLLPRAPKI 233

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321
             E +++A   Y   +    I +++ +L GIND   +   + ++L G  A +NLIP+N  
Sbjct: 234 APEEIVEAGERY-ARATGYPIQYQWTLLDGINDGDDEVDAIARLLAGRYAMMNLIPYNET 292

Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            G  +     +     +  + R G  + +R   G D+   CGQL++
Sbjct: 293 EGDGFRRPPWERAAEMARALGRRGVLTRLRRSAGQDVAGGCGQLRA 338


>gi|330950790|gb|EGH51050.1| hypothetical protein PSYCIT7_05158 [Pseudomonas syringae Cit 7]
          Length = 158

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 82/124 (66%), Gaps = 1/124 (0%)

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALN 301
           +HA ++ LRN LVP+N+KYPL+ML+++CR Y   L   R +T EY MLK IND    A+ 
Sbjct: 1   MHAPNDALRNQLVPLNKKYPLKMLLESCRRYMSNLGEKRVLTIEYTMLKDINDKVEHAVE 60

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +I++LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AA
Sbjct: 61  MIELLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAA 120

Query: 362 CGQL 365
           CGQL
Sbjct: 121 CGQL 124


>gi|34497708|ref|NP_901923.1| ribosomal RNA large subunit methyltransferase N [Chromobacterium
           violaceum ATCC 12472]
 gi|81655644|sp|Q7NVT9|Y2253_CHRVO RecName: Full=Probable RNA methyltransferase CV_2253
 gi|34103564|gb|AAQ59925.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 352

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 134/281 (47%), Gaps = 36/281 (12%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +P   R  LCVSSQVGC++ C+FC TG   L+R L + EI  QV LAR +     
Sbjct: 90  VESVLLP---RDGLCVSSQVGCAVGCTFCMTGKSGLLRQLGSAEIAAQVALARRI----- 141

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-IASDSMGLSFSKRRITLST 221
                         R +  +V MGMGEP  N +NV +++  + +D    +   + +  ST
Sbjct: 142 --------------RPVKKVVFMGMGEPAHNMENVLEAIQWLGTDG---NIGHKNLVFST 184

Query: 222 SGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
            G      R+ + E+   LA+SLH    DLR  L+P   +     L++    Y     AR
Sbjct: 185 VGDARVFERLPQLEVKPALALSLHTTRADLREQLLPRAPRIAPAELVELGEAY-----AR 239

Query: 281 R----ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
           R    I +++ +L G+NDS  +     ++LKG    +N+IP+N   G  +     + +  
Sbjct: 240 RVGYPIQYQWTLLAGVNDSQEEMDAAARLLKGKYGVLNIIPYNSVEGDRFQRPSSERVQA 299

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
               +  +G  + +R   G D+   CGQL++ +  +    R
Sbjct: 300 IKRYLHDNGVLTKVRDSAGQDVDGGCGQLRARAAHVIDASR 340


>gi|294944627|ref|XP_002784350.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239897384|gb|EER16146.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 308

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 148/299 (49%), Gaps = 31/299 (10%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF-SIIYPE 74
           E+ E L K   P+  + +    ++K    +G+     ++ + Q VR  L       + P 
Sbjct: 38  EIVECLEKERTPEWQIGLVIQDVFK----KGVSSPSAINRVPQGVRDALQARLGESLSPL 93

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
            V E+ S D   K+LL   +R  GG  +IE V +  +S  +LCVSSQ+GC+  CSFC TG
Sbjct: 94  RVLEQGSADFAHKFLLE--SRQDGG--KIEAVGLDFRSHTSLCVSSQIGCAFNCSFCATG 149

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L R L+ +EI+ QVL+ R                  + G  + ++  MGMGEPL N 
Sbjct: 150 KLGLKRQLSVDEIVGQVLMFR------------------ATGNVVDSVSFMGMGEPLAN- 190

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNI 253
             +  ++S+ +D   +  S RR+++ST G +P + ++ E      +A SLH+   + R  
Sbjct: 191 PKIFNAISVMTDPQLVGLSTRRMSISTIGIIPGLVKLTELHPQANVAYSLHSPFPEEREK 250

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK-ILKGIPA 311
           ++PI R YP   + D        +  RRI   Y++LKGINDS R A    K  LK  PA
Sbjct: 251 IMPIQRVYPFAKVFDVLDDRIKRT-GRRIWISYLLLKGINDSERYATYEAKNALKRKPA 308


>gi|205829718|sp|Q5P119|Y2870_AZOSE RecName: Full=Probable RNA methyltransferase AZOSEA28700
          Length = 354

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 129/266 (48%), Gaps = 26/266 (9%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +P   R  LCVS+QVGC++ C+FC TG   L+R L + EI+ QV+LARS      
Sbjct: 87  VESVLLP---RDGLCVSTQVGCAVGCAFCMTGRDGLLRQLGSAEIVAQVVLARSR----- 138

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         R +  +V MGMGEP  N DNV +++++     G+    + +  ST 
Sbjct: 139 --------------RAVRKVVFMGMGEPAHNLDNVLEAIALLGTEGGIGH--KNLVFSTV 182

Query: 223 GFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G      R+ +  +   LA+SLH     LR  L+P   +     L++    Y   +    
Sbjct: 183 GDRRVFERLPQGSVKPALALSLHTTRPALRTKLMPRAPRLDPAELVELGETY-ARATGYP 241

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           I +++ +L G+ND   +   ++++L G  A +N IP+N   G  +     +     +  +
Sbjct: 242 IQYQWTLLAGVNDDDEELDGIVRLLAGKYAVMNFIPYNSVAGAGFARPSWEHAAAMARYL 301

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKS 367
            R G  + +R   G D+   CGQL++
Sbjct: 302 HRRGILTKLRHSAGQDVDGGCGQLRA 327


>gi|239820673|ref|YP_002947858.1| Radical SAM domain protein [Variovorax paradoxus S110]
 gi|239805526|gb|ACS22592.1| Radical SAM domain protein [Variovorax paradoxus S110]
          Length = 351

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 132/275 (48%), Gaps = 26/275 (9%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +P   R  LCVSSQVGC++ C FC TG   L+R + + EI+ QV LAR       
Sbjct: 88  VESVLLP---RDGLCVSSQVGCAVGCRFCMTGRDGLLRQVGSAEIIAQVALAR------- 137

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                       + R +  +V MGMGEP  N DNV +++ +   ++G +   + +  ST 
Sbjct: 138 ------------MRRPVRKVVFMGMGEPAHNLDNVMEAIELLG-TVG-NIGHKNLVFSTV 183

Query: 223 GFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G      R+ +  +   LA+SLH     LR  L+P       E L+ A   Y   +    
Sbjct: 184 GDPRAFERLQQARVRPALALSLHTTKAGLRKKLLPRAPNMTPEELVGAGERY-ARATGYP 242

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           I +++ +L G+ND P +   ++++L G    +N+IPFN   G  +     +     +  +
Sbjct: 243 IQYQWTLLDGVNDGPEEIDGIVRLLSGKFGVLNMIPFNAVEGVAFSRPSLERCEQMARTL 302

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376
            + G  + +R   G D+   CGQL++ +     VP
Sbjct: 303 HQRGILTKLRHSAGQDVDGGCGQLRARAAEARVVP 337


>gi|217969807|ref|YP_002355041.1| ribosomal RNA large subunit methyltransferase N [Thauera sp. MZ1T]
 gi|217507134|gb|ACK54145.1| Radical SAM domain protein [Thauera sp. MZ1T]
          Length = 347

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 32/277 (11%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +P   R  LCVS+QVGC++ C FC TG   L+R L + EI+ QV LAR L     
Sbjct: 87  VESVLLP---RDGLCVSTQVGCAVGCVFCMTGKDGLLRQLDSGEIVAQVALARRL----- 138

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         R++  +V MGMGEP  N D V +++ +      L    + + LST 
Sbjct: 139 --------------RRVHKVVFMGMGEPAHNLDAVIEAIELLGTEGALPH--KNLVLSTV 182

Query: 223 GFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVP-INRKYPLEM--LIDACRHYPGLSN 278
           G +    R+ +  +   LA+SLH+    LR  L+P   R  P E+  L +A     G   
Sbjct: 183 GDLRVFERLPQMRVKPALALSLHSTRAALRAALLPRAPRIDPAELVELGEAWARASGYP- 241

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFS 338
              I +++ +++G+ND   +   ++++L G  A +N+IPFN   G +Y     +     +
Sbjct: 242 ---IQYQWTLIEGVNDGEDELEGIVRLLAGKYAVMNMIPFNRVDGLDYRRPAAESAAEIA 298

Query: 339 ECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
             + R+G  + +R   G D+   CGQL++   ++  V
Sbjct: 299 RRLHRAGILTKLRQSAGQDVDGGCGQLRAREAKLAFV 335


>gi|56478307|ref|YP_159896.1| ribosomal RNA large subunit methyltransferase N [Aromatoleum
           aromaticum EbN1]
 gi|56314350|emb|CAI08995.1| predicted Fe-S-cluster redox enzyme,radical SAM family [Aromatoleum
           aromaticum EbN1]
          Length = 397

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 129/266 (48%), Gaps = 26/266 (9%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +P   R  LCVS+QVGC++ C+FC TG   L+R L + EI+ QV+LARS      
Sbjct: 130 VESVLLP---RDGLCVSTQVGCAVGCAFCMTGRDGLLRQLGSAEIVAQVVLARSR----- 181

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         R +  +V MGMGEP  N DNV +++++     G+    + +  ST 
Sbjct: 182 --------------RAVRKVVFMGMGEPAHNLDNVLEAIALLGTEGGIGH--KNLVFSTV 225

Query: 223 GFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G      R+ +  +   LA+SLH     LR  L+P   +     L++    Y   +    
Sbjct: 226 GDRRVFERLPQGSVKPALALSLHTTRPALRTKLMPRAPRLDPAELVELGETY-ARATGYP 284

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           I +++ +L G+ND   +   ++++L G  A +N IP+N   G  +     +     +  +
Sbjct: 285 IQYQWTLLAGVNDDDEELDGIVRLLAGKYAVMNFIPYNSVAGAGFARPSWEHAAAMARYL 344

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKS 367
            R G  + +R   G D+   CGQL++
Sbjct: 345 HRRGILTKLRHSAGQDVDGGCGQLRA 370


>gi|124268797|ref|YP_001022801.1| ribosomal RNA large subunit methyltransferase N [Methylibium
           petroleiphilum PM1]
 gi|205829646|sp|A2SLX7|Y3613_METPP RecName: Full=Probable RNA methyltransferase Mpe_A3613
 gi|124261572|gb|ABM96566.1| Fe-S-cluster redox enzyme,radical SAM family [Methylibium
           petroleiphilum PM1]
          Length = 352

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 129/266 (48%), Gaps = 26/266 (9%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +P   R  LCVS+QVGC++ C FC TG   L+R L + EI+ QV LAR       
Sbjct: 87  VESVLLP---RDGLCVSTQVGCAVGCVFCMTGQGGLLRQLGSAEIVAQVALARGH----- 138

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         R +  +V MGMGEP  N DNV +++ +   + G+    + +  ST 
Sbjct: 139 --------------RAVKKVVFMGMGEPAHNLDNVLEAIELLGTAGGIGH--KNLVFSTV 182

Query: 223 GFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G      R+ +  +   LA+SLH    +LR  L+P   +   E L+     Y   +    
Sbjct: 183 GDERVFERLPQGAVKPALALSLHTTKPELRAQLLPRAPRIAPEDLVAHGERY-ARATGYP 241

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           + +++ ++ G+ND   +   ++++L G  A +NLIP+N   G  +     +  V  +  +
Sbjct: 242 VQYQWTLIDGVNDGDDELDGIVRLLAGRYAVMNLIPYNTVDGLAFQRPAWERAVAMAGAL 301

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKS 367
            R G  + +R   G D+   CGQL++
Sbjct: 302 HRRGVLTKLRRSAGQDVEGGCGQLRA 327


>gi|255632735|gb|ACU16719.1| unknown [Glycine max]
          Length = 245

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 129/245 (52%), Gaps = 28/245 (11%)

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TG+     NL++ EI                   +E +V  S   +I N+V M
Sbjct: 1   MGCNFCATGSMGFKNNLSSGEI-------------------VEQLVHASTFSQIRNVVFM 41

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSF--SKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
           GMGEPL N+  V +++ I +   GL F  S +RIT+ST G +  I ++ +++ G+ LA+S
Sbjct: 42  GMGEPLNNYSAVVEAVRIMT---GLPFQLSSKRITISTVGIIHAINKLHDDLPGLNLAVS 98

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA + D+R  ++P  R +PL  L+D+ + Y   S  ++I  EY+ML G+ND    A  L
Sbjct: 99  LHAPAQDIRCQIMPAARAFPLGKLMDSLQVYQRKS-LQKIFIEYIMLDGVNDEEHHAHLL 157

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS--SPIRTPRGLDILA 360
            K+L+     +NLIPFN            +  V+  + I R  Y+  + +R   G DI  
Sbjct: 158 GKLLETFQVVVNLIPFNSIGTLSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGRDISG 217

Query: 361 ACGQL 365
           ACGQL
Sbjct: 218 ACGQL 222


>gi|323449897|gb|EGB05782.1| hypothetical protein AURANDRAFT_30404 [Aureococcus anophagefferens]
          Length = 315

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 148/324 (45%), Gaps = 52/324 (16%)

Query: 76  VDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIP--------EKSRGTLCVSSQVGCSL 126
           ++E +S  DGT K L+R     +    ++E V IP         +++ T+CVSSQVGC  
Sbjct: 14  IEESVSAPDGTLKLLVR-----LADGADVEAVVIPPSGGPAKNARAKSTVCVSSQVGCRQ 68

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG   L R+L+  EIL Q+ LA +             + +P       N+V MG
Sbjct: 69  ACAFCATGKMGLARSLSGVEILAQIALATAAA-------RAARLPVP------RNVVFMG 115

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLH 244
           MGEP  N   V+ +++   D    ++ + R+T+ST G  P +     G      +A SLH
Sbjct: 116 MGEPGDNVGAVRDAVAALVDGARFAYGRDRVTVSTVGPAPGVFAELFGYADAPAVAWSLH 175

Query: 245 AVSNDLRNILVPINRKYPLEM---LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           +   +LR  LVP  +    E+   L+ A    P     R+   E V++ G+ND P DA  
Sbjct: 176 SADEELRRTLVPTAKHSAAELRDGLVRALEARP--EKRRKAVLEVVLIAGVNDGPGDADA 233

Query: 302 LIKILKGIPAK------------INLIPFNPW----PGCEYLCSDQKDIVTFSECIKRSG 345
           +   +K I A             +NLIP+N      P  E    D   +  F   ++  G
Sbjct: 234 IAAFVKPIEAACTGTAGGRTGVLVNLIPYNANESVDPSFEPPAPDA--VQAFQARLRDRG 291

Query: 346 YSSPIRTPRGLDILAACGQLKSLS 369
             S  R  RG D  AACGQL + S
Sbjct: 292 VWSSKRAERGADDAAACGQLATAS 315


>gi|226503103|ref|NP_001141039.1| hypothetical protein LOC100273119 [Zea mays]
 gi|194702344|gb|ACF85256.1| unknown [Zea mays]
          Length = 194

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 93/153 (60%), Gaps = 15/153 (9%)

Query: 103 IETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           IETV IP  + R T+CVSSQVGC++ C FC+TG   L ++L+  EI+ Q + AR L  D 
Sbjct: 19  IETVIIPCARGRTTICVSSQVGCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDE 78

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
            G               I+N+V MGMGEP  N DNV K+ +I  D  GL FS R++T+ST
Sbjct: 79  LG--------------SINNVVFMGMGEPFHNIDNVIKASAIMVDEQGLHFSPRKVTVST 124

Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNIL 254
           SG VP + R  +E    LA+SL+A ++++  IL
Sbjct: 125 SGLVPQLKRFLQESNCSLAVSLNATTDEVVIIL 157


>gi|317488030|ref|ZP_07946611.1| hypothetical protein HMPREF1023_00309 [Eggerthella sp. 1_3_56FAA]
 gi|316912860|gb|EFV34388.1| hypothetical protein HMPREF1023_00309 [Eggerthella sp. 1_3_56FAA]
          Length = 195

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 105/190 (55%), Gaps = 2/190 (1%)

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
           + +K++ IV MGMGEPL N+DN+  ++ I  D  GL+F    IT+ST G V  + ++ EE
Sbjct: 7   IRQKVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVNQLKKLREE 66

Query: 235 -IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
            + + L ISLHA +   RN ++P    Y +E ++     Y    N R++ F Y++L GIN
Sbjct: 67  HLKIQLTISLHAATQAARNCIIPHMHMYAIEDVVKQALSYSQRHN-RKVVFAYLLLPGIN 125

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D   D   L K  KG    IN++ +NP    +     ++++V F   ++++G    +R  
Sbjct: 126 DRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRVS 185

Query: 354 RGLDILAACG 363
            G +I AACG
Sbjct: 186 HGREIKAACG 195


>gi|300858724|ref|YP_003783707.1| hypothetical protein cpfrc_01307 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686178|gb|ADK29100.1| hypothetical protein cpfrc_01307 [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 203

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 7/188 (3%)

Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           G GEPL N+  V  ++   +  +  G   S+R +T+ST G  P I ++ EE + V LA+S
Sbjct: 14  GWGEPLANYKRVVSAVRQITSPVPEGFGISQRNVTVSTVGLAPAIRKLAEEDLSVTLAVS 73

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH   ++LRN LVP N ++ +  ++DA R+Y   S  RR++ EY +++ +ND P  A  L
Sbjct: 74  LHTPDDELRNTLVPTNNRWEVAEVLDAARYYADRS-GRRVSIEYALIRDVNDQPWRADML 132

Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K L    G    +NLIP NP PG E+  S +     F   +   G    +R  RG +I 
Sbjct: 133 GKKLHKALGSLVHVNLIPLNPTPGSEWDASPKDRQHEFVRRVIAQGVPCTVRDTRGQEIA 192

Query: 360 AACGQLKS 367
           AACGQL +
Sbjct: 193 AACGQLAA 200


>gi|313610609|gb|EFR85705.1| ribosomal RNA large subunit methyltransferase N [Listeria
           monocytogenes FSL F2-208]
          Length = 171

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 103/163 (63%), Gaps = 7/163 (4%)

Query: 221 TSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           TSG  P I     E+  V LAISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N 
Sbjct: 1   TSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN- 59

Query: 280 RRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVT 336
           RRITFEY+MLKG+ND  ++AL L  +L      A +NLIP+NP     +Y  S ++D++ 
Sbjct: 60  RRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLA 119

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
           F + +K++G +  IR   G DI AACGQL+  SK+I +V  +E
Sbjct: 120 FYDTLKKNGINCVIRREHGTDIDAACGQLR--SKQIKRVGVRE 160


>gi|255573175|ref|XP_002527517.1| catalytic, putative [Ricinus communis]
 gi|223533157|gb|EEF34915.1| catalytic, putative [Ricinus communis]
          Length = 337

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 112/202 (55%), Gaps = 22/202 (10%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P   R TLC+SSQVGC + C FC TG+     NL++ EI+ Q++ A  L           
Sbjct: 152 PGGPRSTLCISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHATQL----------- 200

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
                    +I N+V MGMGEPL N+  + +++ +   S     S ++IT+ST G +  I
Sbjct: 201 --------SQIRNVVFMGMGEPLNNYTALVEAIRVMLGS-PFQLSPKKITVSTVGVIHAI 251

Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            ++  ++ G+ LA+SLHA   D+R  ++P  R +PLE L+DA + Y   S  ++I  EY+
Sbjct: 252 NKLQRDLPGLNLAVSLHAPVQDIRCHIMPAARAFPLEKLMDALQVYQKNSQ-QKIFIEYI 310

Query: 288 MLKGINDSPRDALNLIKILKGI 309
           ML G+ND  + A  L K+L+  
Sbjct: 311 MLDGVNDEEQHAHQLGKLLEAF 332


>gi|67592602|ref|XP_665654.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54656439|gb|EAL35423.1| hypothetical protein Chro.40137 [Cryptosporidium hominis]
          Length = 600

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 165/385 (42%), Gaps = 102/385 (26%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KK S+     + L +AL   G+     R+    IW+ I  +GI+D   + DI +    +
Sbjct: 9   IKKHSIFDY--KSLTKALDDAGVK----RIHAYTIWRNIVQKGIKDMSEIKDIPKAAYKI 62

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYI-------------- 108
           +N+ FSI+  ++++ + S DG T K + R     +    EIE V +              
Sbjct: 63  INEQFSILNIQLINSQTSKDGNTTKIIFR-----LQDSHEIEAVIMRYGDDQVNENTNIC 117

Query: 109 -------------------PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
                               +  R ++CVSSQ+GC + C FC TG+  L  +L + EIL 
Sbjct: 118 NSNSNNNNNDSNQQEISTSSKYKRISICVSSQIGCRMGCMFCATGSMGLRGSLLSGEILQ 177

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q+   +++L +                  + N+V MGMGEPL N+D V  S+ +  D   
Sbjct: 178 QLYYIKNILKE-----------------PVRNVVFMGMGEPLENYDEVIDSIRLMVDPRI 220

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPL----- 263
            S S   I +ST G   NI  + +++ GV L +SLHA +  LR  +VPI R Y +     
Sbjct: 221 FSLSSGHILVSTVGIPSNIVNLADDLPGVGLCLSLHAPNQSLRERIVPIARLYKISDLMR 280

Query: 264 -------EMLIDACRHYPGLSNARR-------------------------ITFEYVMLKG 291
                  + +I+ C  Y  L + R                          I  EY MLK 
Sbjct: 281 SLDIFIFKTIINKC--YKNLLDDRNKDHIKDNMNYDDILISNKLLYGHKMIIIEYTMLKD 338

Query: 292 INDSPRDALNLIKILKGIPAKINLI 316
           +NDS   A+ L  +LK  P   N+I
Sbjct: 339 VNDSEDHAVELANLLKNTPISKNII 363


>gi|194693462|gb|ACF80815.1| unknown [Zea mays]
          Length = 206

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 109/193 (56%), Gaps = 8/193 (4%)

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--GEEIGVMLAIS 242
           MGMGEP+ N  +V ++    +    L   +R +T+ST G VPN  ++    ++   LA+S
Sbjct: 1   MGMGEPMMNLKSVLEAHQCFNKE--LKIGQRMMTISTVG-VPNTIKMLASHKLQSTLAVS 57

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +  LR  +VP  + YPL  L+D C+ Y  L   RR++FEY +L GIND    A  L
Sbjct: 58  LHAPNQKLRETIVPSAKSYPLGALMDDCKSY-FLETGRRVSFEYTLLAGINDEKEHAEEL 116

Query: 303 IKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++L+  G    +NLIP+NP  G EY    +K +  F + ++    +  +R  RGLD  A
Sbjct: 117 AELLRMCGGGYHVNLIPYNPIEGSEYKRPYRKVVQAFVDALEARKITVSVRRTRGLDANA 176

Query: 361 ACGQLKSLSKRIP 373
           ACGQL++  ++ P
Sbjct: 177 ACGQLRNEFQKNP 189


>gi|187478042|ref|YP_786066.1| ribosomal RNA large subunit methyltransferase N [Bordetella avium
           197N]
 gi|123752381|sp|Q2L1Z5|Y1540_BORA1 RecName: Full=Probable RNA methyltransferase BAV1540
 gi|115422628|emb|CAJ49153.1| radical SAM protein [Bordetella avium 197N]
          Length = 351

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 132/272 (48%), Gaps = 38/272 (13%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +P   R  LCVS+QVGC++ C FC TG   L+R +T+ EIL QV+LAR       
Sbjct: 89  VESVLLP---RDGLCVSTQVGCAVGCRFCMTGKSGLIRQVTSMEILAQVVLARRR----- 140

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         R +  +V MGMGEP  N +NV +++++       +   + +  ST 
Sbjct: 141 --------------RAVKKVVFMGMGEPAHNLENVLEAINLLGTEG--NIGHKNLVFSTV 184

Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID----ACRH--YPG 275
           G       + ++ +   LA+SLH    +LR  L+P       + L++      RH  YP 
Sbjct: 185 GDRRVFEALPQQRVKPALALSLHTTKAELRARLLPRAPSIAPDELVELGERYARHIGYP- 243

Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIV 335
                 I +++ +LKG+ND   +   ++++LKG    +N+IPFN   G +Y   D + I 
Sbjct: 244 ------IQYQWTLLKGVNDGNDELDAVLRLLKGKYGVLNVIPFNSLEGDDYQRPDLERIR 297

Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
                +   G    +R   G D+   CGQL++
Sbjct: 298 EIVRYVHSRGVLVKVRNSAGQDVDGGCGQLRA 329


>gi|289571070|ref|ZP_06451297.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289544824|gb|EFD48472.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
          Length = 189

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 7/188 (3%)

Query: 187 MGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MGEPL N+  V  ++    A    G   S R +T+ST G  P I  + +  +GV LA+SL
Sbjct: 1   MGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 60

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  + LR+ LVP+N ++ +   +DA R+Y  ++  RR++ EY +++ +ND P  A  L 
Sbjct: 61  HAPDDGLRDTLVPVNNRWRISEALDAARYYANVTG-RRVSIEYALIRDVNDQPWRADLLG 119

Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           K L    G  A +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I A
Sbjct: 120 KRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISA 179

Query: 361 ACGQLKSL 368
           ACGQL ++
Sbjct: 180 ACGQLAAV 187


>gi|291614657|ref|YP_003524814.1| radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291584769|gb|ADE12427.1| Radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 412

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 138/316 (43%), Gaps = 72/316 (22%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E+V +P   RG LCVS+QVGC++ C FC +G   L+R L + EI+ QV+LAR       
Sbjct: 106 VESVLLP---RGGLCVSTQVGCAVGCVFCMSGRDGLLRQLGSAEIVAQVVLARKR----- 157

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                         R +S +V MGMGEP  N DNV +++ +       +   + + LST 
Sbjct: 158 --------------RAVSKVVFMGMGEPAHNLDNVLEAIELLGTQG--NIGHKNLVLSTV 201

Query: 223 GFV---------------------------------------PNIARVGEE--------I 235
           G +                                       P   R G          +
Sbjct: 202 GDLRVFERLMEGLTHKPSPQPSGGTTDHSTRPSENNGQVAGHPACGRGGNRERQSSIAAV 261

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              LA+SLH     LR  L+P   + P+E L++    Y   +    + +++ +++G+NDS
Sbjct: 262 KPALALSLHTTDEVLRTRLLPQAPRIPVEELVERAEIY-ARATGYPVQYQWTLIEGVNDS 320

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
             +   ++++LKG  A +N IPFN   G  Y     + I   +  +   G  S +R   G
Sbjct: 321 DAELARIVQLLKGKYAIMNFIPFNEVDGLTYRRPSGERIAAMAYALNGQGIYSRVRDSAG 380

Query: 356 LDILAACGQLKSLSKR 371
            +I  ACGQL++ + +
Sbjct: 381 QEIEGACGQLRARAAK 396


>gi|325849079|ref|ZP_08170571.1| putative 23S rRNA m2A2503 methyltransferase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480324|gb|EGC83387.1| putative 23S rRNA m2A2503 methyltransferase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 223

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/192 (38%), Positives = 113/192 (58%), Gaps = 6/192 (3%)

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEI 235
           ISNIV+MG+GEPL NF N++K + I +D  G + S R IT+ST G V  I   A +G +I
Sbjct: 31  ISNIVVMGIGEPLDNFSNIEKFIKIITDQKGRNLSHRSITVSTVGLVDKIYDLANLGYDI 90

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              LA+SLH   ++ R   +P  +KY ++ +I AC +Y   +  RR+++EYV++ G+N+ 
Sbjct: 91  N--LAVSLHYAFDEKRMAYMPSGKKYKIKDIIKACDYYLEKT-KRRVSYEYVVIDGVNNL 147

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
             D   L  + KG    INLIP NP    +Y  +    +  F + + + G ++ IR   G
Sbjct: 148 REDIDQLENLFKGKNIHINLIPLNPIEEFKYSKTKNNVMDQFQQKLTKKGLNATIRRSMG 207

Query: 356 LDILAACGQLKS 367
            DI A+CGQL++
Sbjct: 208 SDIDASCGQLRN 219


>gi|237840113|ref|XP_002369354.1| GPI transamidase 8, putative [Toxoplasma gondii ME49]
 gi|211967018|gb|EEB02214.1| GPI transamidase 8, putative [Toxoplasma gondii ME49]
 gi|221503977|gb|EEE29654.1| GPI transamidase, putative [Toxoplasma gondii VEG]
          Length = 270

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 126/265 (47%), Gaps = 35/265 (13%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
                   GC+  CSFC  G    +R L+A+EI  QVL                      
Sbjct: 2   NFAARGAAGCAFNCSFCSVGKSGFLRQLSADEITDQVLF------------------FLR 43

Query: 175 VGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
            G KI ++  MGMGEPL N   FD ++    I +D +  +FS R++ +ST G +P I ++
Sbjct: 44  QGIKIDSVSFMGMGEPLANPKMFDAIR----ILTDPLLFNFSARKLAVSTLGVLPGIKKL 99

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            EE   V LA SLH+   + RNILVP NR +P+E + D           RRI   Y+++K
Sbjct: 100 TEEHPQVNLAFSLHSPFPEERNILVPANRMFPMEEVFDLLDERLA-KTGRRIWISYILIK 158

Query: 291 GINDSPRDALNLIKILKG--IPAK----INLIPFNPWPGCEYLCS--DQKDIVTFSECIK 342
           G N++   A  L  +L+    P +    +N+IP+N   G E         ++  F++ ++
Sbjct: 159 GRNNTEEHAKALAALLRERRRPTRHLYHVNVIPYNTAQGVESSMQPPSAAEVNHFTDLLR 218

Query: 343 RSGYSSPIRTPRGLDILAACGQLKS 367
           +   S   R   G  I AACGQ+ +
Sbjct: 219 KLHLSVSRRHTIGSAIDAACGQMHA 243


>gi|148662723|ref|YP_001284246.1| hypothetical protein MRA_2904 [Mycobacterium tuberculosis H37Ra]
 gi|148506875|gb|ABQ74684.1| hypothetical protein MRA_2904 [Mycobacterium tuberculosis H37Ra]
          Length = 195

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 105/188 (55%), Gaps = 7/188 (3%)

Query: 187 MGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
            GEPL N+  V  ++    A    G   S R +T+ST G  P I  + +  +GV LA+SL
Sbjct: 7   WGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 66

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  + LR+ LVP+N ++ +   +DA R+Y  ++  RR++ EY +++ +ND P  A  L 
Sbjct: 67  HAPDDGLRDTLVPVNNRWRISEALDAARYYANVTG-RRVSIEYALIRDVNDQPWRADLLG 125

Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           K L    G  A +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I A
Sbjct: 126 KRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISA 185

Query: 361 ACGQLKSL 368
           ACGQL ++
Sbjct: 186 ACGQLAAV 193


>gi|221483043|gb|EEE21367.1| GPI transamidase, putative [Toxoplasma gondii GT1]
          Length = 270

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 126/258 (48%), Gaps = 35/258 (13%)

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC+  CSFC  G    +R L+A+EI  QVL                       G KI +
Sbjct: 9   AGCAFNCSFCSVGKSGFLRQLSADEITDQVLF------------------FLRQGIKIDS 50

Query: 182 IVMMGMGEPLCN---FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
           +  MGMGEPL N   FD ++    I +D +  +FS R++ +ST G +P I ++ EE   V
Sbjct: 51  VSFMGMGEPLANPKMFDAIR----ILTDPLLFNFSARKLAVSTLGVLPGIKKLTEEHPQV 106

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA SLH+   + RNILVP NR +P+E + D           RRI   Y+++KG N++  
Sbjct: 107 NLAFSLHSPFPEERNILVPANRMFPMEEVFDLLDERLA-KTGRRIWISYILIKGRNNTEE 165

Query: 298 DALNLIKILKG--IPAK----INLIPFNPWPGCEYLCS--DQKDIVTFSECIKRSGYSSP 349
            A  L  +L+    P +    +N+IP+N   G E         ++  F++ +++   S  
Sbjct: 166 HAKALAALLRERRRPTRHLYHVNVIPYNTAQGVESSMQPPSATEVNHFTDLLRKLHLSVS 225

Query: 350 IRTPRGLDILAACGQLKS 367
            R   G  I AACGQ+ +
Sbjct: 226 RRHTIGSAIDAACGQMHA 243


>gi|66357070|ref|XP_625713.1| conserved protein with transmembrane region at C-terminus
           [Cryptosporidium parvum Iowa II]
 gi|46226740|gb|EAK87719.1| conserved protein with transmembrane region at C-terminus
           [Cryptosporidium parvum Iowa II]
          Length = 602

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 165/385 (42%), Gaps = 102/385 (26%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KK S+     + L +AL   G+     R+    IW+ I  +GI++   + DI +    +
Sbjct: 12  IKKHSIFDY--KSLTKALDDAGVK----RIHAYTIWRNIVQKGIKNMSEIKDIPKAAYKI 65

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYI-------------- 108
           +N+ FSI+  ++++ + S DG T K + R     +    EIE V +              
Sbjct: 66  INEQFSILNIQLINSQTSKDGNTTKIIFR-----LQDSHEIEAVIMRYGDDQVNENTNIC 120

Query: 109 -------------------PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
                               +  R ++CVSSQ+GC + C FC TG+  L  +L + EIL 
Sbjct: 121 NSNSNNKNNDSNQQEISTSSKYKRISICVSSQIGCRMGCMFCATGSMGLRGSLLSGEILQ 180

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q+   +++L +                  + N+V MGMGEPL N+D V  S+ +  D   
Sbjct: 181 QLYYIKNILKE-----------------PVRNVVFMGMGEPLENYDEVIDSIRLMVDPRI 223

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPL----- 263
            S S   I +ST G   NI  + +++ GV L +SLHA +  LR  ++PI R Y +     
Sbjct: 224 FSLSSGHILVSTVGIPSNIINLADDLPGVGLCLSLHAPNQSLRERIIPIARLYKISDLMR 283

Query: 264 -------EMLIDACRHYPGLSNARR-------------------------ITFEYVMLKG 291
                  + +I+ C  Y  L + R                          I  EY MLK 
Sbjct: 284 SLDIFIFKTIINKC--YKNLLDDRNKDHIKDNMNYDDILISNKLLYGHKMIIIEYTMLKD 341

Query: 292 INDSPRDALNLIKILKGIPAKINLI 316
           +NDS   A+ L  +LK  P   N+I
Sbjct: 342 VNDSEDHAVELANLLKNTPISKNII 366


>gi|15610016|ref|NP_217395.1| hypothetical protein Rv2879c [Mycobacterium tuberculosis H37Rv]
 gi|1403399|emb|CAA98355.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
          Length = 189

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 105/187 (56%), Gaps = 7/187 (3%)

Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           GEPL N+  V  ++    A    G   S R +T+ST G  P I  + +  +GV LA+SLH
Sbjct: 2   GEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLH 61

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  + LR+ LVP+N ++ +   +DA R+Y  ++  RR++ EY +++ +ND P  A  L K
Sbjct: 62  APDDGLRDTLVPVNNRWRISEALDAARYYANVTG-RRVSIEYALIRDVNDQPWRADLLGK 120

Query: 305 ILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
            L    G  A +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I AA
Sbjct: 121 RLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISAA 180

Query: 362 CGQLKSL 368
           CGQL ++
Sbjct: 181 CGQLAAV 187


>gi|77415028|ref|ZP_00791102.1| Unknown [Streptococcus agalactiae 515]
 gi|77158922|gb|EAO70159.1| Unknown [Streptococcus agalactiae 515]
          Length = 168

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 97/155 (62%), Gaps = 5/155 (3%)

Query: 217 ITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
           IT+STSG    I     E + V L++SLHA +N+LR+ ++ INR +PLE L  A  +Y  
Sbjct: 1   ITVSTSGLAHKIREFANEGVQVNLSVSLHAPNNELRSSIMRINRSFPLEKLFAAIEYYIE 60

Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNP-WPGCEYLCSDQK 332
            +N RR+TFEY+ML G+ND+P +A  L  + K I   + +NLIP+NP     +Y  S ++
Sbjct: 61  TTN-RRVTFEYIMLNGVNDTPENAQELADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKE 119

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +  F + +K++G +  +R   G DI AACGQL+S
Sbjct: 120 RVEAFYDVLKKNGVNCVVRQEHGTDIDAACGQLRS 154


>gi|71029582|ref|XP_764434.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351388|gb|EAN32151.1| hypothetical protein, conserved [Theileria parva]
          Length = 235

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 117/229 (51%), Gaps = 28/229 (12%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWL 89
           + R SQI+  IY     +F  M  + + +R  L+ +F  S++    V E  SCD  +K L
Sbjct: 21  KYRLSQIFNSIYRNKTSNFLSMYHLPKILRDGLHDNFNGSLLSLTPVSES-SCDRAKKVL 79

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
            +           IE V +   +  +LC+SSQVGCS  CSFC TG   L RNLT +EI  
Sbjct: 80  FQNQDGS-----RIEAVLLHFNTHKSLCISSQVGCSFACSFCATGKIGLKRNLTMDEITD 134

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           QVL  + L                  G KI +I  MGMGEPL N  NV +++S+ +D   
Sbjct: 135 QVLYFQQL------------------GHKIDSISFMGMGEPLSN-PNVFRAISVLTDKRY 175

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPI 257
              S RRI +ST G +P I ++ +E   V LA SLH+   + RN +VPI
Sbjct: 176 FGLSPRRINVSTVGILPGIKKLNKEFPYVNLAYSLHSPFTEERNEMVPI 224


>gi|167951358|ref|ZP_02538432.1| radical SAM enzyme, Cfr family protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 133

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/119 (52%), Positives = 80/119 (67%), Gaps = 1/119 (0%)

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +N+LR+ LVPIN+KYPLE LI ACR +      R+IT+EYVML GINDS + A 
Sbjct: 1   MSLHAPTNELRDQLVPINQKYPLEELIPACRDFIKGDKRRKITWEYVMLDGINDSIQHAK 60

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT-PRGLDI 358
            LI++L+G P+K+NLIPFNP+PG  Y  S +      S     SG SSP+   P G DI
Sbjct: 61  ALIRLLEGTPSKLNLIPFNPFPGTSYKTSPRGAGRGISPAPDESGASSPLPARPAGEDI 119


>gi|147867042|emb|CAN80514.1| hypothetical protein VITISV_023658 [Vitis vinifera]
          Length = 206

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 110/193 (56%), Gaps = 9/193 (4%)

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAIS 242
           MGMGEP+ N  +V ++    +  + +   +R IT+S+ G VPN  +     ++   LAIS
Sbjct: 1   MGMGEPMLNLKSVIEAHRCLNKDVQIG--QRMITISSVG-VPNTIKKLASYKLQSTLAIS 57

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +  LR  +VP  + YPL+ ++  CR Y  L  +RR++FEY +L G+ND+   A+ L
Sbjct: 58  LHAPNQKLRETIVPSAKSYPLDAIMKDCRDY-FLETSRRVSFEYTLLAGVNDAVEHAIEL 116

Query: 303 IKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++L   G    +NLIPFNP  G E+     K +  F+  ++    +  +R  RGLD  A
Sbjct: 117 AELLHEWGPGYHVNLIPFNPIEGSEFQRPYNK-VQAFAAALESRKVTVSVRQTRGLDASA 175

Query: 361 ACGQLKSLSKRIP 373
           ACGQL++  ++ P
Sbjct: 176 ACGQLRNEFQKSP 188


>gi|308802175|ref|XP_003078401.1| unnamed protein product [Ostreococcus tauri]
 gi|116056853|emb|CAL53142.1| unnamed protein product [Ostreococcus tauri]
          Length = 368

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 134/310 (43%), Gaps = 52/310 (16%)

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE-------KSRGTLCVSS 120
           F +    +  E  S DG+   L+          VE++  +  E       K R TLCVSS
Sbjct: 21  FELYTTRVAHESASSDGSTTKLI----------VELQDGHKIEACVMRHAKGRTTLCVSS 70

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C+FC TGT   + NL + EIL Q+  A  +                       
Sbjct: 71  QVGCKMGCTFCATGTLGELGNLASFEILEQLAHANRV----------------------- 107

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
                    PL N+D+V +++ + +D    + S  +IT+ST G +P +  +  +  G  L
Sbjct: 108 -------AAPLNNYDSVIEAIGVMTDDKAFALSASKITVSTVGVIPRMRTLTRDAPGTCL 160

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA + +LR  +VP    Y L+ L+     Y       +   EY +L G+ND    A
Sbjct: 161 ALSLHAPTQELRQKIVPTATAYKLDDLMRVLEEYLASGPKMKTMIEYCVLGGVNDDETCA 220

Query: 300 LNLIKILKGIPAKI--NLIPFNP--WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
             L ++ +G   KI  NLIP NP   P      + +         +K+ G     R   G
Sbjct: 221 EKLGELFRGKEEKIILNLIPLNPTDTPAGHVPPTPEAVRKMMEILMKKYGLFVTRRHTMG 280

Query: 356 LDILAACGQL 365
            DI  ACGQL
Sbjct: 281 DDIAGACGQL 290


>gi|330894490|gb|EGH27151.1| radical SAM protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 131

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 80/129 (62%), Gaps = 9/129 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 12  KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 67

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 68  ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 122

Query: 126 LTCSFCYTG 134
           L CSFC TG
Sbjct: 123 LDCSFCSTG 131


>gi|225849839|ref|YP_002730073.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1]
 gi|225646250|gb|ACO04436.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1]
          Length = 271

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 138/268 (51%), Gaps = 35/268 (13%)

Query: 103 IETVYIPEKSRG-TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           +E+VY     RG TLCVSSQ+GC + CSFC +G   L+RNL+ +EI+ Q  +A S     
Sbjct: 25  VESVYY----RGDTLCVSSQLGCPVRCSFCASGMNGLIRNLSYDEIIDQYRIAVS----- 75

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
                 EGM       +I NI   G+GEPL N++NVKK+     D +GL     + +  T
Sbjct: 76  ------EGM-------EIKNIAFAGIGEPLLNWENVKKAFYHFKD-IGL-----KASFYT 116

Query: 222 SGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYPGLSNA 279
           +GF + N   + E     +++SLHAV+++ R  L+P  +  PL+ ++D  + H   LS  
Sbjct: 117 TGFPLKNFKELLELPHNGVSLSLHAVTDEKRKQLIPYGQ--PLDQILDVFKDHLSKLSRR 174

Query: 280 RRITFE--YVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
           +R  +   Y+++ G+NDS  +   L +I + +   ++L+ +N   G +Y  +  ++    
Sbjct: 175 KRKMYSIAYLLIGGVNDSEEEIQKLSQIARDLQVGVSLLKYNEIDGIDYRSTSDEEYERV 234

Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQL 365
              ++ +G    +        +  CG L
Sbjct: 235 FLQLRENGIRVTLSNRYRTRKIGGCGTL 262


>gi|225456810|ref|XP_002275716.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 198

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 56/132 (42%), Positives = 83/132 (62%)

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
           E    LA+SL+A +N++RN ++PINRKY L +L+   R      +  ++ FEYVML G+N
Sbjct: 45  ESNCALAVSLNATTNEVRNWVMPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVN 104

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           DS  DA  LI +++GIP K+NLI FNP  G ++  + ++ I+ F   +  +G    +R  
Sbjct: 105 DSLEDARRLIDLVQGIPCKVNLISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPS 164

Query: 354 RGLDILAACGQL 365
           RG D +AACGQL
Sbjct: 165 RGDDQMAACGQL 176


>gi|82794611|ref|XP_728508.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484893|gb|EAA20073.1| unnamed protein product [Plasmodium yoelii yoelii]
          Length = 351

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 130/267 (48%), Gaps = 30/267 (11%)

Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           +IE   +   S  +LC+SSQ+GCS  C FC TG   + R L  +EI  Q+L  +      
Sbjct: 92  KIEATALDFGSHTSLCISSQIGCSFGCKFCATGQIGIKRQLELDEITDQLLYFQ------ 145

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
                       S    I N+  MGMGEPL N  NV +++   ++S   S S RRI +ST
Sbjct: 146 ------------SKNVNIKNVSFMGMGEPLAN-PNVFEAIRFFNNSNFFSLSSRRINIST 192

Query: 222 SGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
            G +P I ++ E    V L+ SLH+   + R+ LVPIN+ +P   ++D        +N R
Sbjct: 193 VGLLPGIKKLNELFPQVNLSFSLHSPFTEERDQLVPINKLFPFHEVLDLLDDRIAKTN-R 251

Query: 281 RITFEYVMLKGINDSPRDALNLI-KILKGIPA-----KINLIPFNPWPG-CEYL--CSDQ 331
           R+   Y+++K +NDS   A  L   I+K  P+      I LIP+N     C+      ++
Sbjct: 252 RVWISYILIKDVNDSTDHAEALCDHIIKRPPSVRYLYNICLIPYNKAKNVCDEFQRLDEE 311

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDI 358
           + I  F + +++   S   R    LDI
Sbjct: 312 EKIRQFEKILRKHRISFFYRYKILLDI 338


>gi|6434045|emb|CAB60749.1| hypothetical protein [Staphylococcus aureus]
          Length = 133

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 84/131 (64%), Gaps = 1/131 (0%)

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  +++R+ L+PINR Y +E LI+A ++Y   +N RR+TFEY +  G+ND    A  
Sbjct: 1   SLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHARE 59

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AA
Sbjct: 60  LAHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAA 119

Query: 362 CGQLKSLSKRI 372
           CGQL++  +++
Sbjct: 120 CGQLRAKERQV 130


>gi|70948819|ref|XP_743877.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56523585|emb|CAH84934.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 379

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 130/282 (46%), Gaps = 38/282 (13%)

Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           +IE   +   S  +LC+SSQ+GCS  C FC TG   + R L  +EI  Q+L         
Sbjct: 87  KIEATALDFGSHTSLCISSQIGCSFGCKFCATGQIGIKRQLELDEITDQLL--------- 137

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
                       S    I N+  MGMGEPL N  NV +++   ++S   S S RRI +ST
Sbjct: 138 ---------YFQSKNVNIKNVSFMGMGEPLAN-PNVFEAIRFFNNSNFFSLSSRRINIST 187

Query: 222 SGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
            G +P I ++ E    V L+ SLH+   + R+ LVPIN+ +P   ++D          +R
Sbjct: 188 VGLLPGIKKLNELFPQVNLSFSLHSPFTEERDQLVPINKLFPFHEVLDLLDDRIA-KTSR 246

Query: 281 RITFEYVMLKGINDSPRDALNLI-KILKGIPA-----KINLIPFNPWPGCEYLCS----- 329
           R+   Y+++K +NDS   A  L   ILK  P+      I LIP+N       +       
Sbjct: 247 RVWISYILIKDVNDSTDHAEALCDHILKRPPSVRYLYNICLIPYNKGITFHRISFFYRYS 306

Query: 330 -----DQKDIVTFSECIKRSGYSSPI-RTPRGLDILAACGQL 365
                 ++ I T    I    + S + R   G  I AACGQL
Sbjct: 307 IIKIVKKQMIYTKYTTINMFFFLSFLNRNSFGYAIDAACGQL 348


>gi|221482944|gb|EEE21275.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
           GT1]
          Length = 482

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 129/269 (47%), Gaps = 37/269 (13%)

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R T+C+S+QVGC + C+FC TGT    RNL   EIL Q+  A  +               
Sbjct: 77  RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------------- 121

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
                 I NIV MGMGEPL N+++V  S+   +     +    R+ +ST G    I ++ 
Sbjct: 122 ----ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLA 177

Query: 233 EEI-GVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHY---------PGLSNARR 281
            ++    LA+SLHA     R  L+P     + LE +++A   +          G+ N   
Sbjct: 178 SDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTGMKNI-G 236

Query: 282 ITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFS 338
           +  EY+M++ +ND+   A  L +IL  +     +NLIP+NP     +Y  S Q+ +  F 
Sbjct: 237 LLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFL 296

Query: 339 ECIKRSGYSSP--IRTPRGLDILAACGQL 365
             I R  Y+    +R   G DI +ACGQL
Sbjct: 297 -TILRKEYAIKVLVRQTLGQDIDSACGQL 324


>gi|95007443|emb|CAJ20664.1| hypothetical protein, conserved [Toxoplasma gondii RH]
          Length = 641

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 129/269 (47%), Gaps = 37/269 (13%)

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R T+C+S+QVGC + C+FC TGT    RNL   EIL Q+  A  +               
Sbjct: 236 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------------- 280

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
                 I NIV MGMGEPL N+++V  S+   +     +    R+ +ST G    I ++ 
Sbjct: 281 ----ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLA 336

Query: 233 EEI-GVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHY---------PGLSNARR 281
            ++    LA+SLHA     R  L+P     + LE +++A   +          G+ N   
Sbjct: 337 SDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTGMKNI-G 395

Query: 282 ITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFS 338
           +  EY+M++ +ND+   A  L +IL  +     +NLIP+NP     +Y  S Q+ +  F 
Sbjct: 396 LLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFL 455

Query: 339 ECIKRSGYSSP--IRTPRGLDILAACGQL 365
             I R  Y+    +R   G DI +ACGQL
Sbjct: 456 -TILRKEYAIKVLVRQTLGQDIDSACGQL 483


>gi|237840861|ref|XP_002369728.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
 gi|211967392|gb|EEB02588.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
          Length = 619

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 129/269 (47%), Gaps = 37/269 (13%)

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R T+C+S+QVGC + C+FC TGT    RNL   EIL Q+  A  +               
Sbjct: 214 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------------- 258

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
                 I NIV MGMGEPL N+++V  S+   +     +    R+ +ST G    I ++ 
Sbjct: 259 ----ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLA 314

Query: 233 EEI-GVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHY---------PGLSNARR 281
            ++    LA+SLHA     R  L+P     + LE +++A   +          G+ N   
Sbjct: 315 SDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTGMKNI-G 373

Query: 282 ITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFS 338
           +  EY+M++ +ND+   A  L +IL  +     +NLIP+NP     +Y  S Q+ +  F 
Sbjct: 374 LLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFL 433

Query: 339 ECIKRSGYSSP--IRTPRGLDILAACGQL 365
             I R  Y+    +R   G DI +ACGQL
Sbjct: 434 -TILRKEYAIKVLVRQTLGQDIDSACGQL 461


>gi|307127683|ref|YP_003879714.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae 670-6B]
 gi|306484745|gb|ADM91614.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae 670-6B]
          Length = 300

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 88/138 (63%), Gaps = 4/138 (2%)

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E + V LA+SLHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +
Sbjct: 148 EGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEV 206

Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSP 349
           ND    AL L ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  
Sbjct: 207 NDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCV 266

Query: 350 IRTPRGLDILAACGQLKS 367
           +R   G DI AACGQL+S
Sbjct: 267 VRQEHGTDIDAACGQLRS 284



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 88/157 (56%), Gaps = 13/157 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           C++ C+FC +G  K  R+L   EI+ Q++L +    D
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAD 147


>gi|221503269|gb|EEE28967.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
           VEG]
          Length = 619

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 129/269 (47%), Gaps = 37/269 (13%)

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R T+C+S+QVGC + C+FC TGT    RNL   EIL Q+  A  +               
Sbjct: 214 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------------- 258

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
                 I NIV MGMGEPL N+++V  S+   +     +    R+ +ST G    I ++ 
Sbjct: 259 ----ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLA 314

Query: 233 EEI-GVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHY---------PGLSNARR 281
            ++    LA+SLHA     R  L+P     + LE +++A   +          G+ N   
Sbjct: 315 SDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTGMKNI-G 373

Query: 282 ITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFS 338
           +  EY+M++ +ND+   A  L +IL  +     +NLIP+NP     +Y  S Q+ +  F 
Sbjct: 374 LLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFL 433

Query: 339 ECIKRSGYSSP--IRTPRGLDILAACGQL 365
             I R  Y+    +R   G DI +ACGQL
Sbjct: 434 -TILRKEYAIKVLVRQTLGQDIDSACGQL 461


>gi|168492917|ref|ZP_02717060.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC3059-06]
 gi|183576957|gb|EDT97485.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC3059-06]
          Length = 300

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 88/138 (63%), Gaps = 4/138 (2%)

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E + V LA+SLHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +
Sbjct: 148 EGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEV 206

Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSP 349
           ND    AL L ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  
Sbjct: 207 NDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCV 266

Query: 350 IRTPRGLDILAACGQLKS 367
           +R   G DI AACGQL+S
Sbjct: 267 VRQEHGTDIDAACGQLRS 284



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 89/157 (56%), Gaps = 13/157 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  ++ + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           C++ C+FC +G  K  R+L   EI+ Q++L +    D
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAD 147


>gi|332076047|gb|EGI86513.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pneumoniae GA41301]
          Length = 300

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 88/138 (63%), Gaps = 4/138 (2%)

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E + V LA+SLHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +
Sbjct: 148 EGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEV 206

Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSP 349
           ND    AL L ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  
Sbjct: 207 NDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCV 266

Query: 350 IRTPRGLDILAACGQLKS 367
           +R   G DI AACGQL+S
Sbjct: 267 VRQEHGTDIDAACGQLRS 284



 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 13/157 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           C++ C+FC  G  K  R+L   EI+ Q++L +    D
Sbjct: 111 CNIGCTFCAFGLIKKQRDLNNGEIVAQIMLVQKYFAD 147


>gi|221231562|ref|YP_002510714.1| radical SAM superfamily protein [Streptococcus pneumoniae ATCC
           700669]
 gi|220674022|emb|CAR68535.1| radical SAM superfamily protein [Streptococcus pneumoniae ATCC
           700669]
          Length = 300

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 87/138 (63%), Gaps = 4/138 (2%)

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E + V LA+SLHA +N+LR+  + INR +P+E L  A  +Y   +N RR+TFEY+ML  +
Sbjct: 148 EGVQVNLAVSLHAPNNELRSSTMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEV 206

Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSP 349
           ND    AL L ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  
Sbjct: 207 NDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCV 266

Query: 350 IRTPRGLDILAACGQLKS 367
           +R   G DI AACGQL+S
Sbjct: 267 VRQEHGTDIDAACGQLRS 284



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 89/157 (56%), Gaps = 13/157 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  ++ + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QVG
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           C++ C+FC +G  K  R+L   EI+ Q++L +    D
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAD 147


>gi|325114363|emb|CBZ49920.1| radical SAM enzyme, Cfr family, related [Neospora caninum
           Liverpool]
          Length = 512

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 128/270 (47%), Gaps = 39/270 (14%)

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R T+C+S+QVGC + C+FC TGT    RNL   EIL Q+  A  +               
Sbjct: 89  RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------------- 133

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
                KI NIV MGMGEPL N++NV  S+   +     +     + +ST G    I ++ 
Sbjct: 134 ----EKIRNIVFMGMGEPLDNYNNVVASVRFMTQPNKFAIGGHHVCISTVGLPHRIRQLA 189

Query: 233 EEIGV-MLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNARRIT------- 283
            ++    LA+SLHA     R  L+P     + L+ ++DA   +  +   +R+        
Sbjct: 190 SDLPTCRLALSLHAPDQPTRLKLMPRAAAGWKLDRVLDATDEF--VKQQKRVNSTAMKNI 247

Query: 284 ---FEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKDIVTF 337
               EY+M++ +ND+   A  L +IL  +     +NLIP+NP     +Y  S  + +  F
Sbjct: 248 GLLVEYIMIQDVNDTIDQAHALGRILQPRADAVIVNLIPYNPTEVPYDYKPSTPERVDEF 307

Query: 338 SECIKRSGYSSP--IRTPRGLDILAACGQL 365
              I R  YS    +R   G DI +ACGQL
Sbjct: 308 LR-ILRQDYSIKVLVRQTLGQDIDSACGQL 336


>gi|302841922|ref|XP_002952505.1| hypothetical protein VOLCADRAFT_105556 [Volvox carteri f.
           nagariensis]
 gi|300262144|gb|EFJ46352.1| hypothetical protein VOLCADRAFT_105556 [Volvox carteri f.
           nagariensis]
          Length = 368

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 135/353 (38%), Gaps = 141/353 (39%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           ELEE  + +G P +    R  Q+++W+Y                                
Sbjct: 108 ELEEWCISVGEPAK----RAKQLYRWLY-------------------------------- 131

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
                   G RKW+ R   +  G P      +            ++VGC++ C FCYTG 
Sbjct: 132 --------GNRKWI-RNLDQADGDPQAFSAAF-----------KAKVGCAMNCQFCYTGR 171

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             L+ NL+  +IL QV+ AR  L +       + + IP     I+NIV MGMGEPL N+D
Sbjct: 172 MGLLGNLSTAQILEQVVEARRYLAE-------QSVHIP-----IANIVFMGMGEPLHNYD 219

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255
                                                    VM AI       ++R+ +V
Sbjct: 220 ----------------------------------------AVMAAI-------EVRDWIV 232

Query: 256 PINRKYPLEMLIDACRH---YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
           P NR+YPLE L+   R    Y        +  EYV+L G+NDS  DA  L+ +   I   
Sbjct: 233 PTNRRYPLEQLLGVLREAFPYDKRKGDNFVVIEYVLLAGVNDSTEDAKRLLNLTNDIYCL 292

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +NLI FNP  G ++                        R+ +G + +AACGQL
Sbjct: 293 VNLIVFNPHTGTQF-----------------------SRSSKGDEQMAACGQL 322


>gi|146319331|ref|YP_001199043.1| Fe-S-cluster redox protein [Streptococcus suis 05ZYH33]
 gi|145690137|gb|ABP90643.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis 05ZYH33]
          Length = 208

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 104/186 (55%), Gaps = 21/186 (11%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89
           + R +QIW+W+Y   ++ F  M+++ + +   L +HF +  +   IV E  S DGT K+L
Sbjct: 24  KFRATQIWEWLYRSRVQSFAEMTNLPKSLIEKLEEHFVVNPLKQRIVQE--SKDGTIKYL 81

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
              P   +     IETV + +    ++CV++QVGC++ C+FC +G     R+LT+ EI+ 
Sbjct: 82  FELPDGML-----IETVLMHQHYGLSVCVTTQVGCNIGCTFCASGLIPKQRDLTSGEIVA 136

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q++L +  L +             +   ++S+IV+MG+GEPL N+DNV   L + +D  G
Sbjct: 137 QIMLVQKYLDE------------RNQNERVSHIVVMGIGEPLDNYDNVMTFLRVVNDDKG 184

Query: 210 LSFSKR 215
           L+   R
Sbjct: 185 LAIGAR 190


>gi|209879529|ref|XP_002141205.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
 gi|209556811|gb|EEA06856.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
          Length = 529

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 173/427 (40%), Gaps = 115/427 (26%)

Query: 37  QIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPA- 94
           ++W+++  + +++F  + DI + +   +  +F ++   IV    + DG T K ++R    
Sbjct: 36  RVWRYLIQKNVKEFSDIPDIPKRILEEIQLNFKLLTSNIVQSHTTDDGNTTKLIIRLQDG 95

Query: 95  -----------RC--IGGPVE------IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
                      RC  +    E      +E   +P   R +LCVSSQ+GC + C+FC TGT
Sbjct: 96  HEIETVIMRYDRCNDVAKKSENKNLDTLEVPNLPIYRRVSLCVSSQIGCRIGCTFCATGT 155

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             L  +L   EI+ QV  A ++L +                  + N+V MGMGEPL N++
Sbjct: 156 LGLGGSLVTGEIIEQVYHAINILNE-----------------PVKNVVFMGMGEPLENYN 198

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNIL 254
            V  ++ I  D+     S  +I++ST G    I  + +++ GV L +SLHA    LR  +
Sbjct: 199 EVVDAIKILLDTRLYGLSPSKISISTVGIPSGIVNMADDLPGVGLCLSLHAPDQVLREQI 258

Query: 255 VPINRKYPLEMLIDACRHY----------------------------------PGLSNAR 280
           VPI + Y +  LI +   +                                  P   N+ 
Sbjct: 259 VPIAKMYKISELIRSTDIFIAKSILNKFIKKITDQRNNRTEIKIDNLESTIISPKWFNSH 318

Query: 281 R-ITFEYVMLKGINDS----------------PRDALNLI------------KILKGIPA 311
             +  EY+++K +NDS                 ++ +N+I            K+ K    
Sbjct: 319 STVMIEYILIKDVNDSINHAKALANLLNNTYTDKNDINMIFERCIQSERLEKKVAKSFQK 378

Query: 312 K------------INLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
                        +N++P++      +Y    +  + TF   +   G    +R   G DI
Sbjct: 379 AFLDNYKRSNFIFVNILPYSETNATPKYATPSEGKVRTFCRILNNYGIVVTVRRKMGQDI 438

Query: 359 LAACGQL 365
             ACGQL
Sbjct: 439 GGACGQL 445


>gi|221060556|ref|XP_002260923.1| radical SAM protein [Plasmodium knowlesi strain H]
 gi|193810997|emb|CAQ42895.1| radical SAM protein, putative [Plasmodium knowlesi strain H]
          Length = 377

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 140/315 (44%), Gaps = 31/315 (9%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M + +   +LLK+       + R  QI   +Y   I     M ++   +R  + + FS  
Sbjct: 1   MEKSKRYASLLKMMDRNSFPKYRLQQILDNMYKAKITSVSKMKNVPTNIRREMKKIFSEN 60

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
              I   K      R + + F  +      +IE   +   S  +LC+SSQ+GCS  C FC
Sbjct: 61  LLSIKPLK-EYKFDRAYKVLFECK---DKEKIEATSLDFGSHKSLCISSQIGCSFACKFC 116

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG   + R L  +EI  Q+L                     S    + N+  MGMGEPL
Sbjct: 117 ATGQIGIKRQLELDEITDQLL------------------YFQSKNENVRNVSFMGMGEPL 158

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDL 250
            N  +V +S+   ++    S S RRI +ST G +P I ++ +    V L+ SLH+  ++ 
Sbjct: 159 AN-PHVFESIKFFNNVNLFSLSSRRINISTVGLLPGIKKLNDLHPQVNLSFSLHSPFSEE 217

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R+ LVPIN+ +P   ++D        +  RR+   Y++LK +NDS   A  L   +   P
Sbjct: 218 RDKLVPINKLFPFHEVLDLLDSRIART-GRRVWISYILLKDVNDSKDHAEALCNHIVQRP 276

Query: 311 AKIN------LIPFN 319
             +       LIP+N
Sbjct: 277 RAVRYLYNVCLIPYN 291


>gi|225854275|ref|YP_002735787.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae JJA]
 gi|225722744|gb|ACO18597.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae JJA]
          Length = 300

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 87/137 (63%), Gaps = 4/137 (2%)

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E + V LA+SLHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +
Sbjct: 148 EGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEV 206

Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSP 349
           ND    AL L ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  
Sbjct: 207 NDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCV 266

Query: 350 IRTPRGLDILAACGQLK 366
           +R   G DI AACGQL+
Sbjct: 267 VRQEHGTDIDAACGQLR 283



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 87/157 (55%), Gaps = 13/157 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             F +  +   IV E  S DGT K+L   P   +     IETV + +    ++CV++QV 
Sbjct: 58  DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVS 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           C++ C+FC +G  K  R+L   EI+ Q++L +    D
Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAD 147


>gi|74317969|ref|YP_315709.1| ribosomal RNA large subunit methyltransferase N [Thiobacillus
           denitrificans ATCC 25259]
 gi|123759042|sp|Q3SHI2|Y1951_THIDA RecName: Full=Probable RNA methyltransferase Tbd_1951
 gi|74057464|gb|AAZ97904.1| Fe-S-cluster redox enzyme, radical SAM family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 362

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 138/299 (46%), Gaps = 39/299 (13%)

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           ++  E    DG+ + L+R     +     +E+V +P   R  +CVS+QVGC++ C FC T
Sbjct: 64  QVHSEHPGEDGSARLLVR-----LADGQTVESVLLP---RDGVCVSTQVGCAVGCVFCMT 115

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   L+R L+  EI+ QV+LARS                    R +  +V MGMGEP  N
Sbjct: 116 GRAGLLRQLSGAEIVAQVVLARSR-------------------RPVRKVVFMGMGEPAHN 156

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            DNV  ++ +     G+    + +  ST G      R+ +  +    A+SLH     LR 
Sbjct: 157 LDNVLDAIELLGLEGGIGH--KNLVFSTVGDRRVFERLPQSTVKPARALSLHTTDRALRR 214

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGINDSPRDALNLIKILKG 308
            L+P       + L++    Y     ARR    I +++ +L+GIND+  +   + ++L G
Sbjct: 215 RLLPRAPDIAPQELVELGEAY-----ARRTGYPIQYQWTLLEGINDTEAELEGIARLLAG 269

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             A +NLIP+N      +           +  + R G  + +R   G D+   CGQL++
Sbjct: 270 RYAVMNLIPYNATEADGFNRPSWARAAEMARRLHRRGVLAKLRHSAGQDVDGGCGQLRA 328


>gi|225860741|ref|YP_002742250.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229131|ref|ZP_06962812.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255804|ref|ZP_06979390.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|225727931|gb|ACO23782.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|327390124|gb|EGE88467.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pneumoniae GA04375]
          Length = 300

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 87/137 (63%), Gaps = 4/137 (2%)

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E + V LA+SLHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +
Sbjct: 148 EGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEV 206

Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSP 349
           ND    AL L ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  
Sbjct: 207 NDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCV 266

Query: 350 IRTPRGLDILAACGQLK 366
           +R   G DI AACGQL+
Sbjct: 267 VRQEHGTDIDAACGQLR 283



 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 81/145 (55%), Gaps = 9/145 (6%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEI 75
            + + K  + Q   + R  QIW+W+Y + ++ F+ M+++S+++   LN  F +  +   I
Sbjct: 10  HQTMQKWVLEQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQRI 69

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
           V E  S DGT K+L   P   +     IETV + +    ++CV++QVGC++ C+FC +G 
Sbjct: 70  VQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGL 122

Query: 136 QKLVRNLTAEEILLQVLLARSLLGD 160
            K  R+L   EI+ Q++L +    D
Sbjct: 123 IKKQRDLNNGEIVAQIMLVQKYFAD 147


>gi|298502552|ref|YP_003724492.1| Fe-S-cluster redox enzyme [Streptococcus pneumoniae TCH8431/19A]
 gi|298238147|gb|ADI69278.1| Fe-S-cluster redox enzyme [Streptococcus pneumoniae TCH8431/19A]
          Length = 288

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 87/137 (63%), Gaps = 4/137 (2%)

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E + V LA+SLHA +N+LR+ ++ INR +P+E L  A  +Y   +N RR+TFEY+ML  +
Sbjct: 136 EGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEV 194

Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSP 349
           ND    AL L ++LK I   + +NLIP+NP     +Y  S ++ ++ F + +K+ G +  
Sbjct: 195 NDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCV 254

Query: 350 IRTPRGLDILAACGQLK 366
           +R   G DI AACGQL+
Sbjct: 255 VRQEHGTDIDAACGQLR 271



 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 78/137 (56%), Gaps = 9/137 (6%)

Query: 26  IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCD 83
           + Q   + R  QIW+W+Y + ++ F+ M+++S+++   LN  F +  +   IV E  S D
Sbjct: 6   LEQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQRIVQE--SAD 63

Query: 84  GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
           GT K+L   P   +     IETV + +    ++CV++QVGC++ C+FC +G  K  R+L 
Sbjct: 64  GTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLN 118

Query: 144 AEEILLQVLLARSLLGD 160
             EI+ Q++L +    D
Sbjct: 119 NGEIVAQIMLVQKYFAD 135


>gi|68074255|ref|XP_679042.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56499685|emb|CAH98368.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 308

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 136/273 (49%), Gaps = 35/273 (12%)

Query: 54  SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR 113
           +DI + +++L +++   I P I ++K      R + + F  +      +IE   +   S 
Sbjct: 47  TDIRKNLKNLFSENILSIKP-IKEDKYD----RAYKILFECK---DKEKIEATALDFGSH 98

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            +LC+SSQ+GCS  C FC TG   + R L  +EI  Q+L  +                  
Sbjct: 99  TSLCISSQIGCSFACKFCATGQIGIKRQLELDEITDQLLYFQ------------------ 140

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
           S    I N+  MGMGEPL N  NV +++   + S   S S RRI +ST G +P I ++ E
Sbjct: 141 SKNVNIKNVSFMGMGEPLAN-PNVFEAIRFFNSSNFFSLSSRRINISTVGLLPGIKKLNE 199

Query: 234 EI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
               V L+ SLH+   + R+ LVPIN+ +P   ++D        +N RR+   Y+++K +
Sbjct: 200 LFPQVNLSFSLHSPFTEERDQLVPINKLFPFHEVLDLLDDRIEKTN-RRVWISYILIKDV 258

Query: 293 NDSPRDALNLIK-ILKGIPA-----KINLIPFN 319
           NDS   A  L + I+K  P+      I LIP+N
Sbjct: 259 NDSTDHAEALCEHIIKRPPSVRYLYNICLIPYN 291


>gi|301119923|ref|XP_002907689.1| ribosomal RNA large subunit methyltransferase N, putative
           [Phytophthora infestans T30-4]
 gi|262106201|gb|EEY64253.1| ribosomal RNA large subunit methyltransferase N, putative
           [Phytophthora infestans T30-4]
          Length = 224

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 104/206 (50%), Gaps = 27/206 (13%)

Query: 38  IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI 97
           IW+++       F  +  I + +R LL +HF+     +  E+ S DGT K LL+     +
Sbjct: 35  IWRYLAQHPDATFADIPGIPKTLRTLLGEHFAHFTTSVTTEQRSADGTVKLLLK-----L 89

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
               EIE V +    R TLCVSSQVGC + C+FC TGT  ++ +L + EIL Q+  A   
Sbjct: 90  QDGHEIEAVIMRHTGRNTLCVSSQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANR- 148

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
                        V P     I N+V MGMGEPL N+D V  ++   +   GL  + + I
Sbjct: 149 -------------VAP-----IRNVVFMGMGEPLNNYDAVLAAIRAMTKVFGL--APKYI 188

Query: 218 TLSTSGFVPNIARVGEEIG-VMLAIS 242
           TLST G +  I ++  +   V LA+S
Sbjct: 189 TLSTVGVIHRIRQLSRDAPLVRLALS 214


>gi|223993285|ref|XP_002286326.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977641|gb|EED95967.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 438

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 145/311 (46%), Gaps = 44/311 (14%)

Query: 79  KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG--TLCVSSQVGCSLTCSFCYTGTQ 136
           K+S DGT K LL+     +   +E+E+V IP   +G  TLCVS   G  +          
Sbjct: 154 KVSSDGTTKLLLKM----VKDGLEVESVIIPWMDKGFSTLCVSWAAGKDV---------H 200

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
            ++ ++     + +V+ +       PG E+     +P V     NIV MGMGEP  N D 
Sbjct: 201 SVLPDMYYASKICRVVES------IPGNEN---KALPPV----DNIVFMGMGEPADNADA 247

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256
           V ++++   D       + +IT+ST    P+           LA S+HAV + LR  LVP
Sbjct: 248 VVRAVNTLVDRRMFGVGQSKITISTVAPDPSAFATLGSAPAALAWSVHAVDDSLRRQLVP 307

Query: 257 INRKYPLEMLIDACRHYPGL-SNA-RRITFEYVMLKGINDSPRD-------ALNLIKILK 307
              KY +E L         L SN  RR   E  ++K +NDSP D       A++++K ++
Sbjct: 308 TT-KYSMEELRAGLVKALSLRSNKLRRTMLEVALMKDVNDSPDDARLLSEFAMSIMKEVR 366

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP------IRTPRGLDILAA 361
           G    +NLIPFN      Y     + ++ F + +  SG +        +RT RG +  +A
Sbjct: 367 GSKIVVNLIPFNDIGHPTYRTPSMERVLEFQKIVVESGDNCDTQVLCYVRTTRGDEESSA 426

Query: 362 CGQLKSLSKRI 372
           CGQL +  K++
Sbjct: 427 CGQLATKKKQV 437


>gi|319942260|ref|ZP_08016575.1| radical SAM domain-containing protein [Sutterella wadsworthensis
           3_1_45B]
 gi|319804133|gb|EFW01033.1| radical SAM domain-containing protein [Sutterella wadsworthensis
           3_1_45B]
          Length = 392

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 124/270 (45%), Gaps = 33/270 (12%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE V +P +    +CVS+Q+GC++ C FC TG   LVR L+  EI  Q  LAR L  +  
Sbjct: 122 IEEVLLPRRG---VCVSTQMGCAVGCVFCMTGKGGLVRQLSDMEIAAQAALARRLRPE-- 176

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                              +V MGMGEP  N DNV ++    +   G  F  + + +ST 
Sbjct: 177 ----------------TKKVVFMGMGEPSHNLDNVLRAAEFLALYGG--FGHKDLVISTV 218

Query: 223 GFVPNIARVGEEIGVM-----LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
           G      R+ E +  M     LA+SLH   +  R  L+P   K  ++ L +A   +    
Sbjct: 219 G----DERLFEALNRMSARPALAVSLHTTDDAKRRTLLPRGAKMTVKALTEAAEAW-ARK 273

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
                 +++ +++G+ND   +   LI++L G  A +N IP N   G  Y   D++     
Sbjct: 274 TGYPTQYQWTLIQGVNDGEEEVNRLIELLTGHYAIVNFIPVNAVDGSVYSRPDREHAAHL 333

Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKS 367
              +K +G  + +R     D+   CGQL++
Sbjct: 334 VRRLKSAGIVATLRDSAAQDVDGGCGQLRA 363


>gi|163785797|ref|ZP_02180287.1| hypothetical protein HG1285_18936 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159878935|gb|EDP72949.1| hypothetical protein HG1285_18936 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 265

 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 127/268 (47%), Gaps = 37/268 (13%)

Query: 103 IETVYIPEKSRG-TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           IE+V+     RG TLCVSSQVGC + C+FC +G + L+RNL+ EEI+ Q           
Sbjct: 20  IESVFY----RGNTLCVSSQVGCPVECAFCASGMKGLIRNLSFEEIIDQYE--------- 66

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
                       S    I+NI   G+GEPL N+DNVKK+     +  GL     +++  T
Sbjct: 67  -----------NSDKENITNITFAGIGEPLLNWDNVKKAFFYFKEK-GL-----KVSFYT 109

Query: 222 SGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYPGLSNA 279
           +GF V N   +       + +S+HAV+ + R  L+P  +    + LI+  + H   LS  
Sbjct: 110 TGFPVKNFKELLNLPHNGITLSIHAVNEEKRKKLIP--KSVDFDKLIETFKQHLDKLSKR 167

Query: 280 RRITFE--YVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
           ++  +   Y+++K +NDS  +   L +I K +   ++L+ FN   G  +  +  ++    
Sbjct: 168 KKKNYSIAYLLIKNVNDSKEELKKLAEIAKYLQVGVSLLKFNEIEGINFKTTPDEEYEKA 227

Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQL 365
              +K  G    +        +  CG L
Sbjct: 228 FLFLKNEGVKVTLSNKYRTRKIGGCGTL 255


>gi|156102374|ref|XP_001616880.1| Fe-S-cluster redox enzyme [Plasmodium vivax SaI-1]
 gi|148805754|gb|EDL47153.1| Fe-S-cluster redox enzyme, putative [Plasmodium vivax]
          Length = 337

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 108/225 (48%), Gaps = 27/225 (12%)

Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           +IE   +   S  +LC+SSQ+GCS  C FC TG   + R L  +EI  Q+L         
Sbjct: 87  KIEATSLDFGSHKSLCISSQIGCSFACKFCATGQIGIKRQLELDEITDQLL--------- 137

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
                       S    + N+  MGMGEPL N  +V +S+   +     + S RRI +ST
Sbjct: 138 ---------YFQSKNEHVRNVSFMGMGEPLAN-PHVFESIHFFNHVNLFALSSRRINIST 187

Query: 222 SGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
            G +P I ++ +    V L+ SLH+  ++ R+ LVPIN+ +P   ++D        +  R
Sbjct: 188 VGLLPGIKKLNDLFPQVNLSFSLHSPFSEERDQLVPINKLFPFHEVLDLLDSRITRT-GR 246

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKIN------LIPFN 319
           R+   Y++LK +NDS   A  L   +   P  +       LIP+N
Sbjct: 247 RVWISYILLKDVNDSKDHAEALCSHICQRPRAVRYLYNVCLIPYN 291


>gi|212634295|ref|YP_002310820.1| hypothetical protein swp_1447 [Shewanella piezotolerans WP3]
 gi|212555779|gb|ACJ28233.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 137

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 68/110 (61%), Gaps = 5/110 (4%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ KW+Y  G+ DF+ M++I++ +R  L +   I+ P+I   + S DGT K+ +  
Sbjct: 20  FRADQLMKWLYHFGVSDFEQMTNINKALRAKLARKCEIVAPKIASYQKSADGTIKFAID- 78

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142
               +G   E+ETVYIPE  R TLCVSSQVGC+L C+FC TG Q   R L
Sbjct: 79  ----VGNGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTGAQGFNRKL 124


>gi|323456324|gb|EGB12191.1| hypothetical protein AURANDRAFT_5797 [Aureococcus anophagefferens]
          Length = 234

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 115/249 (46%), Gaps = 26/249 (10%)

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC T    LVR LTA+EIL Q  +A  +          E   +P     ++NIV MGM
Sbjct: 1   CRFCATARMGLVRQLTADEILAQFAIAARVAR--------ESDAMP----PLTNIVFMGM 48

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           G+   N D+VK + +   D      ++ +IT+ST G  P       +   MLA S+HA  
Sbjct: 49  GDAGRNVDHVKAAATSLVDGDKFRMARSKITISTVGPSPEAFAALADADGMLAWSIHAAD 108

Query: 248 NDLRNILVPINRKYPL----EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
            DLR  LVP +R +PL      LIDA    P  +  R +     +++ +NDS  DA  L 
Sbjct: 109 EDLRRKLVPSSR-HPLPELRRGLIDALEARP--ARRRTLMLAATLIRDVNDSDDDAAKLA 165

Query: 304 KILKGI-----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIK--RSGYSSPIRTPRGL 356
           + +  I        ++LIP NP    ++     + ++ ++  I+          R  RG 
Sbjct: 166 EFIGPIVDAAGKCNVDLIPCNPTDHTDFESPSTERVLAYAAKIRELEPRVHVATRLQRGD 225

Query: 357 DILAACGQL 365
           D  AACGQL
Sbjct: 226 DESAACGQL 234


>gi|307108510|gb|EFN56750.1| hypothetical protein CHLNCDRAFT_22096 [Chlorella variabilis]
          Length = 204

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 96/175 (54%), Gaps = 23/175 (13%)

Query: 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH-YP 274
           +IT+ST G +P + R   E   ++A+SLHA ++++R+ +VP+NR+  L+ LI+     +P
Sbjct: 1   QITVSTVGLIPEMRRFSRESRAVMAVSLHATTDEVRDWIVPVNRREGLQALIECMEELFP 60

Query: 275 GLSNARR----ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
             S A R    +  EY+ML+G+NDS  DA  L+++ + I  KINLI FNP  G  +  S 
Sbjct: 61  KSSAAPRHGHHVLIEYIMLRGVNDSDDDARRLVQLTQSIRCKINLIVFNPHAGTSFQPST 120

Query: 331 QKDIVTFSECIKR------------SGYSSP------IRTPRGLDILAACGQLKS 367
            + +  F   + +            + ++ P      +R  RG D +AACGQL S
Sbjct: 121 PERVYAFRSILIQARRPQQHTHSLTATHTQPHCHVATVRDSRGDDQMAACGQLGS 175


>gi|188996350|ref|YP_001930601.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931417|gb|ACD66047.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 269

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 132/275 (48%), Gaps = 50/275 (18%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE+V+     R TLCVSSQVGCS+ C+FC +G   L+RNL+++EI+ Q  +A+       
Sbjct: 25  IESVHY----RTTLCVSSQVGCSVRCAFCASGLNGLIRNLSSQEIINQFEIAK------- 73

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                        G +I+NI   G+GEPL NF+NVK++      S+GL     +++  T+
Sbjct: 74  -----------DQGFEITNIAFAGIGEPLLNFENVKQAFDYFK-SIGL-----KVSFYTT 116

Query: 223 GF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYPGLSNAR 280
           GF +     +       L +SLH+V  + R  L+P    + +E LI     H   LS+ +
Sbjct: 117 GFPIKYFKELLHLNHDGLTLSLHSVLEEKRKSLIP--NSHSIEELIQVFENHLKTLSSRK 174

Query: 281 RITFE--YVMLKGINDSPRDALNLIKILKGIPAKINL--------IPFNPWPGCEYLCSD 330
           R  +   Y+++ G NDS  +   L  I K +   ++L        +PF   P  EY    
Sbjct: 175 RKLYSIGYLLIYGENDSDEELEALANIAKRLNIGVSLLKYNEIESLPFKTTPDEEY---- 230

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K  +       R+  S+  RT +    +  CG L
Sbjct: 231 EKAFLKLKSHGVRTTLSNRYRTRK----IGGCGTL 261


>gi|330998689|ref|ZP_08322418.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|329576428|gb|EGG57940.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 341

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 143/310 (46%), Gaps = 34/310 (10%)

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
             EK   +   +W+L+       G + IE V +P   R  +CVS+QVGC++ C FC TG 
Sbjct: 61  AQEKAESETGTRWVLK----AYDGQL-IECVLLP---REGVCVSTQVGCAVGCVFCMTGK 112

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             L+R LT  E+  QV  A   + + P                +  +V+MGMGEP  N  
Sbjct: 113 SGLIRQLTDLEVAGQVQYA---MRNAP----------------VKKVVLMGMGEPSHNLR 153

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNIL 254
           +V  ++       G+ +  + + +ST G       + E +I   LAISLH+  ++ R  L
Sbjct: 154 SVFSAVEHIVRYSGIGY--KEVVISTVGDKRLFKALMESQIKPALAISLHSAMDEKRRSL 211

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
           +P   +  ++ +++    Y  +     I +++ ++ G+ND   D +  +  L    A +N
Sbjct: 212 LPRAAELTVKEILEFGAKYAEVGK-YPIQYQWTLINGVNDGV-DEIEALAPLWSRQAILN 269

Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIP 373
           +IP N   G  Y     + I    E  + +G     R     D+   CGQL++ + KR P
Sbjct: 270 MIPVNAVEGSPYKRPSAEQIERIKEACRANGILLKFRDSAAQDVDGGCGQLRARALKRKP 329

Query: 374 KV-PRQEMQI 382
            + P QE++I
Sbjct: 330 AIQPAQELKI 339


>gi|302854556|ref|XP_002958785.1| hypothetical protein VOLCADRAFT_108314 [Volvox carteri f.
           nagariensis]
 gi|300255893|gb|EFJ40175.1| hypothetical protein VOLCADRAFT_108314 [Volvox carteri f.
           nagariensis]
          Length = 993

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 110/239 (46%), Gaps = 62/239 (25%)

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
           + GT  L  NL A EI+ Q++ AR+              V P     I NIV MGMGEPL
Sbjct: 771 WVGTMGLKGNLNAGEIVEQLMHARA--------------VTP-----IRNIVFMGMGEPL 811

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDL 250
            N++ V+ ++++ +DS      +R +T+ST G VP I ++ +++ GV LA+SLHA + +L
Sbjct: 812 NNYEAVRSAVAMMTDSRFFGLRRRHVTVSTVGVVPRIKQLAQDLPGVSLALSLHAPTQEL 871

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R  +VP  R Y L +L+DA                                      G  
Sbjct: 872 RAKIVPSARAYKLPVLMDA--------------------------------------GDD 893

Query: 311 AKINLIPFNPW---PGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAACGQL 365
             INLIP+NP     G  +    +  +  F   ++ + G  + IR   G DI  ACGQL
Sbjct: 894 VVINLIPWNPIYQPEGPFFNAPAEGSVAAFQGVLRHTYGLHTTIRQEMGQDISGACGQL 952


>gi|303258097|ref|ZP_07344105.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
 gi|302859116|gb|EFL82199.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
          Length = 350

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 143/310 (46%), Gaps = 34/310 (10%)

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
             EK   +   +W+L+       G + IE V +P   R  +CVS+QVGC++ C FC TG 
Sbjct: 70  AQEKAESETGTRWVLK----AYDGQL-IECVLLP---REGVCVSTQVGCAVGCVFCMTGK 121

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             L+R LT  E+  QV  A   + + P                +  +V+MGMGEP  N  
Sbjct: 122 SGLIRQLTDLEVAGQVQYA---MRNAP----------------VKKVVLMGMGEPSHNLR 162

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNIL 254
           +V  ++       G+ +  + + +ST G       + E +I   LAISLH+  ++ R  L
Sbjct: 163 SVFSAVEHIVRYSGIGY--KEVVISTVGDKRLFKALMESQIKPALAISLHSAMDEKRRSL 220

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
           +P   +  ++ +++    Y  +     I +++ ++ G+ND   D +  +  L    A +N
Sbjct: 221 LPRAAELTVKEILEFGAKYAEVGK-YPIQYQWTLINGVNDGV-DEIEALAPLWSRQAILN 278

Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIP 373
           +IP N   G  Y     + I    E  + +G     R     D+   CGQL++ + KR P
Sbjct: 279 MIPVNAVEGSPYKRPSAEQIERIKEACRANGILLKFRDSAAQDVDGGCGQLRARALKRKP 338

Query: 374 KV-PRQEMQI 382
            + P QE++I
Sbjct: 339 AIQPAQELKI 348


>gi|237756412|ref|ZP_04584954.1| radical SAM protein [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691428|gb|EEP60494.1| radical SAM protein [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 269

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 131/275 (47%), Gaps = 50/275 (18%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE+V+     R TLCVSSQVGCS+ C+FC +G   L+RNL+++EI+ Q  +A+       
Sbjct: 25  IESVHY----RTTLCVSSQVGCSVRCAFCASGLNGLMRNLSSQEIINQYEIAK------- 73

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                        G +I+NI   G+GEPL NF+NVK++      S+GL     +++  T+
Sbjct: 74  -----------DKGFEITNIAFAGIGEPLLNFENVKQAFDYFK-SIGL-----KVSFYTT 116

Query: 223 GF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYPGLSNAR 280
           GF +     +       L +SLH+V  + R  L+P    + +E LI     H   LS+ +
Sbjct: 117 GFPIKYFKELLHLNHDGLTLSLHSVLEEKRKSLIP--NSHSIEELIQVFENHLKTLSSRK 174

Query: 281 RITFE--YVMLKGINDSPRDALNLIKILKGIP--------AKINLIPFNPWPGCEYLCSD 330
           R  +   Y+++ G NDS  +   L  I K +          +I  +PF   P  EY    
Sbjct: 175 RKLYSIGYLLIYGENDSDEELEALANIAKRLNIGVFLLKYNEIESLPFKTTPDEEY---- 230

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K  +       R+  S+  RT +    +  CG L
Sbjct: 231 EKAFLKLKSNGVRTTLSNRYRTRK----IGGCGTL 261


>gi|75762654|ref|ZP_00742496.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489853|gb|EAO53227.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 246

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 104/192 (54%), Gaps = 23/192 (11%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQIHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +     +     IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDN 196
           MG+GEP  N+DN
Sbjct: 172 MGIGEPFDNYDN 183


>gi|225848095|ref|YP_002728258.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643916|gb|ACN98966.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 276

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 34/222 (15%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE+V+     R TLCVSSQVGCS+ CSFC +G   L RNL+ +EI+ Q L+         
Sbjct: 25  IESVHY----RKTLCVSSQVGCSIKCSFCASGLNGLTRNLSFDEIINQYLM--------- 71

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                    +   G +I +I   G+GEPL N++NVK++      S GLS     ++  T+
Sbjct: 72  ---------VKDKGYEIESIAFAGIGEPLLNWENVKQAFDYFK-SQGLS-----VSFYTT 116

Query: 223 GF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYPGLSNAR 280
           GF + N  ++       + +SLH+V  + R  L+P    + +  LI   + H   LSN +
Sbjct: 117 GFPISNFKQLLALNHDGVNLSLHSVFEEKRKSLIP--NSHTISQLIQVFKDHLQQLSNRK 174

Query: 281 RITFE--YVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           +  +   Y+++ G NDS  +   L +I K +   ++L+ +N 
Sbjct: 175 KKLYNIAYILIYGENDSYEEIDKLGEIAKELGIGVSLLKYNE 216


>gi|288817723|ref|YP_003432070.1| putative Fe-S cluster redox enzyme [Hydrogenobacter thermophilus
           TK-6]
 gi|288787122|dbj|BAI68869.1| putative Fe-S cluster redox enzyme [Hydrogenobacter thermophilus
           TK-6]
 gi|308751322|gb|ADO44805.1| Radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 264

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 127/283 (44%), Gaps = 66/283 (23%)

Query: 102 EIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           +IE V+     RG TLC+S+QVGC++ C FC +G+   VRNLT EEIL Q  L R  L  
Sbjct: 24  KIEAVFY----RGDTLCISTQVGCAIRCPFCLSGSAGFVRNLTYEEILAQYYLLRDTL-- 77

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
                             I  I + G+GEPL N+ +V ++     +  GL     +++  
Sbjct: 78  -----------------PIKRIAVAGIGEPLMNYSHVIRAFWKFKEE-GL-----KVSFY 114

Query: 221 TSGFVPNIARVGEEIGV---MLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYPGL 276
           T+GF P+I  + E I +    L IS+H+  ++ R  L+P      L  LID  R   P +
Sbjct: 115 TTGF-PHI-HLRELIHIPHNGLTISIHSTKSEKRRKLIP--HGGDLNALIDMLREELPRM 170

Query: 277 SNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334
           S  +R  ++  Y++LKG+NDS  D     K+++ +     L+ +N               
Sbjct: 171 SKRKRKKVSLAYLLLKGVNDSYEDLEEFAKLVRDLGVSATLLYYNS-------------- 216

Query: 335 VTFSECIKRSGYSSPIRTPRGL------------DILAACGQL 365
             F E + +S Y       RG             D L  CG L
Sbjct: 217 TGFFETMSKSEYEERFLYLRGYGIRVSLSTRFRKDSLGGCGTL 259


>gi|297733650|emb|CBI14897.3| unnamed protein product [Vitis vinifera]
          Length = 133

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 68/111 (61%)

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
           +PINRKY L +L+   R      +  ++ FEYVML G+NDS  DA  LI +++GIP K+N
Sbjct: 1   MPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVNDSLEDARRLIDLVQGIPCKVN 60

Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LI FNP  G ++  + ++ I+ F   +  +G    +R  RG D +AACGQL
Sbjct: 61  LISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPSRGDDQMAACGQL 111


>gi|15606673|ref|NP_214053.1| hypothetical protein aq_1528 [Aquifex aeolicus VF5]
 gi|2983905|gb|AAC07456.1| hypothetical protein aq_1528 [Aquifex aeolicus VF5]
          Length = 270

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 129/274 (47%), Gaps = 42/274 (15%)

Query: 102 EIETVYIPEK--SRG-TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
           E+E  Y  E    RG TLCVS+QVGC + C+FC +G   L RNL+AEEI  Q      LL
Sbjct: 18  ELEDGYTVESVFYRGDTLCVSTQVGCPVRCTFCASGKNGLFRNLSAEEIYNQY----ELL 73

Query: 159 GD-FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-- 215
            D +P                I  I + G+GEPL N+ NVK++           F K   
Sbjct: 74  KDRYP----------------IKRIAVAGIGEPLSNWRNVKEAFE--------KFKKEGL 109

Query: 216 RITLSTSGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC-RHY 273
           +++  T+GF   ++  +       + ISLH+++++ R  L+P   K  LE +I       
Sbjct: 110 KVSFYTTGFPTKHLRELLHLPHSGVTISLHSLNDETRKYLMPHAGK--LEEVIKVLEEEL 167

Query: 274 PGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           P LS+ +R  ++  Y++LK +NDS  +   L ++ K +   I L+ +N     E+    +
Sbjct: 168 PKLSSKKRKKVSLAYILLKDVNDSQEELEKLAELAKRLGVSITLLYYN--KTFEFEPVSE 225

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           K+       ++  G    + T    D L  CG L
Sbjct: 226 KEYEEAFLFLRSKGVRVTLSTRFRKDKLGGCGTL 259


>gi|57505365|ref|ZP_00371294.1| radical SAM enzyme, Cfr family [Campylobacter upsaliensis RM3195]
 gi|57016501|gb|EAL53286.1| radical SAM enzyme, Cfr family [Campylobacter upsaliensis RM3195]
          Length = 286

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 40/207 (19%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++ ++ EEL E +  +         R  QI +WIY +   DF  MS++ + +R  L ++
Sbjct: 6   NILDLLPEELNEKIQPM--------FRVKQICQWIYQKYADDFSKMSNLPKNLREELAKN 57

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-------------SRG 114
           +     + + E+ S DG+ K+L       +   + IE+V +P K             ++ 
Sbjct: 58  YHFEPLKCIKEERSKDGSIKYLFE-----LEDGLRIESVLLPMKEEKFDEEGKRLSHAKF 112

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           T+CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +                IP 
Sbjct: 113 TICVSSQVGCRSGCSFCLTAKGGLKRNLSAGEIVGQILWIKR------------QNHIPY 160

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL 201
             R   NIV MGMGEPL N +NV K++
Sbjct: 161 ERR--VNIVYMGMGEPLDNLNNVAKAV 185



 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 12/199 (6%)

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSF-----SKRRITLSTSGFVPNIARVGEEIGV 237
           V++ M E    FD   K LS A  ++ +S      S     L+  G +      GE +G 
Sbjct: 91  VLLPMKEE--KFDEEGKRLSHAKFTICVSSQVGCRSGCSFCLTAKGGLKRNLSAGEIVGQ 148

Query: 238 MLAIS-LHAVSNDLRNILVPINRKYPLEMLID---ACRHYPGLSNARRITFEYVMLKGIN 293
           +L I   + +  + R  +V +    PL+ L +   A R +P +   +++ FEY+++ GIN
Sbjct: 149 ILWIKRQNHIPYERRVNIVYMGMGEPLDNLNNVAKAVREFP-IDMRKKVMFEYLLIDGIN 207

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D    A  L+K+L GI AK+NLI FNP  G  Y   + ++ V F + + + G +  IR  
Sbjct: 208 DKIEHAKELVKLLNGIKAKVNLILFNPHQGSIYKRPNLENAVKFQDLLSQKGVTCTIRES 267

Query: 354 RGLDILAACGQLKSLSKRI 372
           +GLDI AACGQLK   K +
Sbjct: 268 KGLDISAACGQLKEREKNL 286


>gi|171920772|ref|ZP_02931966.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|185178859|ref|ZP_02964635.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024156|ref|ZP_02996884.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518505|ref|ZP_03003979.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|188524054|ref|ZP_03004149.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195867775|ref|ZP_03079776.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273491|ref|ZP_03206027.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554199|ref|YP_002284612.1| hypothetical protein UUR10_0208 [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225550410|ref|ZP_03771359.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551492|ref|ZP_03772438.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|171903525|gb|EDT49814.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|184209495|gb|EDU06538.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188018787|gb|EDU56827.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188997879|gb|EDU66976.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195659915|gb|EDX53295.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195660630|gb|EDX53886.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198250011|gb|EDY74791.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209541700|gb|ACI59929.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225379307|gb|EEH01672.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225379564|gb|EEH01926.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 335

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 157/335 (46%), Gaps = 38/335 (11%)

Query: 35  TSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPA 94
           + QI+ WIY + I DF   S+IS+  + +L ++F      I + + + DG+ K+ L    
Sbjct: 33  SKQIYSWIYQKRIFDFDKFSNISKSNQSILKENFDNNLLTINEYQSNSDGSIKFKLLTTI 92

Query: 95  RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154
             I   +      I +   G L   +  G            +K + NL+  E++LQ LL 
Sbjct: 93  NLIINCM------IIKFENGFLIKINPFGI---------NDKKEIINLSTNELVLQTLLV 137

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
           +  L                +G KI+N+++ G  + L N + V   ++I +D  GL+  K
Sbjct: 138 QQFLDQ------------HKLG-KITNVIVKGSQDSLLNMEAVSNFINIINDENGLNIGK 184

Query: 215 RRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDL--RNILVPINRKYPLEMLIDACR 271
           R+I + TSG   ++ + G+ +  + L ISL+A ++ +  + +L   N+ +    LI+  +
Sbjct: 185 RKIVVWTSGVDVDLIKWGQLQNQIELIISLNASNSQVYKKLMLNKTNQNWSFIKLIEQIK 244

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y  ++N  R+  EY+++  IND+   A  L+++LK I   + LIP+N      +  SD 
Sbjct: 245 TYTEMTN-NRVVLEYLLIDKINDNLDYANELVELLKNILCYVLLIPYN----LNHKTSDN 299

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            +       I +   S  +R    LDI  +  QLK
Sbjct: 300 LEEFFNILSINKIRISKRVRKSNDLDI--SFTQLK 332


>gi|227885422|ref|ZP_04003227.1| conserved hypothetical protein [Escherichia coli 83972]
 gi|227837605|gb|EEJ48071.1| conserved hypothetical protein [Escherichia coli 83972]
          Length = 80

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 7/77 (9%)

Query: 73  PEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
           PEIV + IS DGTRKW++R  +  C+      ETVYIP+  RGTLCVSSQ GC+L CSFC
Sbjct: 9   PEIVSQDISADGTRKWVVRVASGSCV------ETVYIPQGGRGTLCVSSQAGCALDCSFC 62

Query: 132 YTGTQKLVRNLTAEEIL 148
            TG Q    +LTA E++
Sbjct: 63  STGKQGFNSDLTAAEVI 79


>gi|218681469|ref|ZP_03529356.1| hypothetical protein RetlC8_22681 [Rhizobium etli CIAT 894]
          Length = 94

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 56/73 (76%)

Query: 5  KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
          +K SLIG+ REE+  AL + G+ ++ ++MR +Q+W WIYVRG+ DF  M+++++++R +L
Sbjct: 22 EKPSLIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 81

Query: 65 NQHFSIIYPEIVD 77
           QHF+I  PEIV+
Sbjct: 82 KQHFTIARPEIVE 94


>gi|294670880|ref|ZP_06735736.1| hypothetical protein NEIELOOT_02584 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307367|gb|EFE48610.1| hypothetical protein NEIELOOT_02584 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 120

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 4/99 (4%)

Query: 269 ACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           ACR Y  L  A R  +TFEYVML GIND    A  L+ +++ +P K NLIPFNP+P   Y
Sbjct: 3   ACRRY--LVKAPRDFVTFEYVMLDGINDKAEHARELLALVRDVPCKFNLIPFNPFPNSGY 60

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             S  ++I  F + ++++G    +R  RG DI AACGQL
Sbjct: 61  ERSSSENIRIFRDILQQAGLVVTVRKTRGDDIDAACGQL 99


>gi|163781579|ref|ZP_02176579.1| hypothetical protein HG1285_01813 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882799|gb|EDP76303.1| hypothetical protein HG1285_01813 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 274

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 108/209 (51%), Gaps = 31/209 (14%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           TLCVS+QVGC + C FC +G + L+RNL+ EEI+ Q  L R      P  E         
Sbjct: 34  TLCVSTQVGCHVRCGFCASGRRGLIRNLSEEEIVSQYELVR------PKFE--------- 78

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-VPNIARVGE 233
               +  I + G+GEPL N+D+V+ +     +   LS    R++  T+G+ + N+  +  
Sbjct: 79  ----VRRIAVAGIGEPLANWDSVRGAFYRFKE---LSL---RVSFYTTGYPLKNLRELLH 128

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYPGLSNARR--ITFEYVMLK 290
                +++S+H++    R  L+P      L  LID  R   P L+  +R  ++  Y+++K
Sbjct: 129 MPHGGVSLSIHSLDRSTRKELMPYAGD--LGRLIDFLRGELPSLTGKKRKKVSLAYLLIK 186

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFN 319
           G+NDS  + + L K+ + +   + L+ +N
Sbjct: 187 GVNDSEDELIELGKLARELGVGVTLLYYN 215


>gi|146319329|ref|YP_001199041.1| Fe-S-cluster redox protein [Streptococcus suis 05ZYH33]
 gi|145690135|gb|ABP90641.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis 05ZYH33]
          Length = 140

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 4/114 (3%)

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKIN 314
           INRK+P+E+L +A   Y  ++N RR+TFEY+ML  +ND    A  L  + K I   + IN
Sbjct: 3   INRKFPIEVLFEAIEDYIKVTN-RRVTFEYIMLNEVNDGVEQAQELADLTKNIRKLSYIN 61

Query: 315 LIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           LIP+NP     +Y  S ++  + F + +K++G +  +R   G DI AACGQL+S
Sbjct: 62  LIPYNPVSEHDQYSRSTKERTLAFFDVLKKNGVNCVVRQEHGTDIDAACGQLRS 115


>gi|255640205|gb|ACU20393.1| unknown [Glycine max]
          Length = 271

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 25/140 (17%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P   R TLC+SSQVGC + C+FC TG+     NL++ EI                   +E
Sbjct: 117 PGGLRATLCISSQVGCKMGCNFCATGSMGFKNNLSSGEI-------------------VE 157

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF--SKRRITLSTSGFVP 226
            +V  S   +I N+V MGMGEPL N+  V +++ I +   GL F  S +RIT+ST G + 
Sbjct: 158 QLVHASTFSQIRNVVFMGMGEPLNNYSAVVEAVRIMT---GLPFQLSSKRITISTVGIIH 214

Query: 227 NIARVGEEI-GVMLAISLHA 245
            I ++ +++ G+ LA+SLHA
Sbjct: 215 AINKLHDDLPGLNLAVSLHA 234


>gi|330975901|gb|EGH75967.1| hypothetical protein PSYAP_04494 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 120

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/86 (48%), Positives = 54/86 (62%)

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339
           R +T EY MLK IND    A+ +I++LK  P KINLIPFNP+P   Y       I  F +
Sbjct: 1   RVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQD 60

Query: 340 CIKRSGYSSPIRTPRGLDILAACGQL 365
            + ++GY+  +RT RG DI AACGQL
Sbjct: 61  LLHQAGYNVTVRTTRGEDIDAACGQL 86


>gi|270593980|ref|ZP_06221492.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae HK1212]
 gi|270318367|gb|EFA29514.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae HK1212]
          Length = 129

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 59/102 (57%), Gaps = 2/102 (1%)

Query: 266 LIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
           +ID+   Y  +SNA   ++T EYVML  +ND    A  L ++LK  P KINLIP+NP+P 
Sbjct: 1   MIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQLAEVLKNTPCKINLIPWNPFPE 60

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             Y  S    I  F + +   G++  IR  RG DI AACGQL
Sbjct: 61  APYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQL 102


>gi|13357773|ref|NP_078047.1| hypothetical protein UU214 [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170761929|ref|YP_001752296.1| hypothetical protein UPA3_0221 [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|183508786|ref|ZP_02958251.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|11356788|pir||H82920 conserved hypothetical UU214 [imported] - Ureaplasma urealyticum
 gi|6899181|gb|AAF30622.1|AE002120_14 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827506|gb|ACA32768.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|182675731|gb|EDT87636.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
          Length = 336

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 168/356 (47%), Gaps = 43/356 (12%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
            EL+E L K+G+        + QI+ WIY + I +F   S+I++    +L ++FS    +
Sbjct: 17  NELKEELFKLGLKS----FISKQIYSWIYQKRIFNFDKFSNIAKNNVIILKENFSNNLLK 72

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
           I   + + DG+ K+        I     I  + I  K+ G L   +  G +         
Sbjct: 73  INSYQSNSDGSIKFEFLTDKNLI-----INCMIIKFKN-GFLIKINPFGINF-------- 118

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
            +K + NL+  E++LQ+LL +  L                +G  I+N+++ G+ + L N 
Sbjct: 119 -KKEIINLSTNELVLQILLIQQFLDQ------------RKLGN-ITNVIIKGLQDSLLNM 164

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDL--- 250
           D V   ++I ++  GL+  KR+I + TSG   ++ + G+ +  + L IS++A SN L   
Sbjct: 165 DVVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNA-SNSLIYQ 223

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           + +L  +N+ +    LI+  + Y  ++N  R+  EY+++  IND    A  L+++LK I 
Sbjct: 224 KIMLKKLNQNWSFLKLIEQIKAYTKITN-NRVVLEYLLIDKINDDLNYANELVELLKNIL 282

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             + LIP+N      Y  S   D       + +   S  IR    LDI  +  QLK
Sbjct: 283 CYVLLIPYNL---NNYRTSANLDDFFNILSVNKIRISKRIRKSNDLDI--SFKQLK 333


>gi|186701974|ref|ZP_02971605.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186700738|gb|EDU19020.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 336

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 168/356 (47%), Gaps = 43/356 (12%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
            EL+E L K+G+        + QI+ WIY + I +F   S+I++    +L ++FS    +
Sbjct: 17  NELKEELFKLGLKS----FISKQIYSWIYQKRIFNFDKFSNIAKNNVIILKENFSNNLLK 72

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
           I   + + DG+ K+        I     I  + I  K+ G L   +  G +         
Sbjct: 73  INSYQSNSDGSIKFEFLTDKNLI-----INCMIIKFKN-GFLIKINPFGINF-------- 118

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
            +K + NL+  E++LQ+LL +  L                +G  I+N+++ G+ + L N 
Sbjct: 119 -KKEIINLSTNELVLQILLIQQFLDQ------------RKLGN-ITNVIIKGLQDILLNM 164

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDL--- 250
           D V   ++I ++  GL+  KR+I + TSG   ++ + G+ +  + L IS++A SN L   
Sbjct: 165 DVVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNA-SNSLIYQ 223

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           + +L  +N+ +    LI+  + Y  ++N  R+  EY+++  IND    A  L+++LK I 
Sbjct: 224 KIMLKKLNQNWSFLKLIEQIKAYTKITN-NRVVLEYLLIDKINDDLNYANELVELLKNIL 282

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             + LIP+N      Y  S   D       + +   S  IR    LDI  +  QLK
Sbjct: 283 CYVLLIPYNL---NNYRTSANLDDFFNILSVNKIRISKRIRKSNDLDI--SFKQLK 333


>gi|289548559|ref|YP_003473547.1| radical SAM protein [Thermocrinis albus DSM 14484]
 gi|289182176|gb|ADC89420.1| Radical SAM domain protein [Thermocrinis albus DSM 14484]
          Length = 270

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 120/268 (44%), Gaps = 37/268 (13%)

Query: 103 IETVYIPEKSRG-TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           IE V+     RG TLCVS+QVGC++ C+FC +G+  L+RNL+ +EI +Q  L +  L   
Sbjct: 25  IEAVFY----RGDTLCVSTQVGCAVGCAFCLSGSAGLLRNLSEDEIYMQYFLLKPFL--- 77

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-IASDSMGLSFSKRRITLS 220
                            I  +   G+GEPL N+ NV  +      + +G++F       +
Sbjct: 78  ----------------PIRRVAFAGIGEPLMNYRNVLGAFERFKREGLGVTF------YT 115

Query: 221 TSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLS 277
           T   + ++  + +     + ISLH +   LR  L+P      LE LI   + Y       
Sbjct: 116 TGHPIKHLPSLLDLPHRGVTISLHTLDPSLRKKLLP--HAGDLEELIALLKDYSKKISKR 173

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
              +I+  Y++LKG+NDSP +     +++K +     L+ +N   G  +     ++    
Sbjct: 174 KKGKISLAYLLLKGVNDSPEEIKAFGRLVKELGFSATLLYYND-TGMGFQAVTPEEYSKA 232

Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQL 365
              ++  G    + T    D L  CG L
Sbjct: 233 FLLLRSMGVRVTLSTRYRRDPLGGCGTL 260


>gi|171920082|ref|ZP_02931510.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902433|gb|EDT48722.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 336

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 168/355 (47%), Gaps = 43/355 (12%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           EL+E L ++G+        + QI+ WIY + I +F   S+I++    +L ++FS    +I
Sbjct: 18  ELKEELFELGLKS----FISKQIYSWIYQKRIFNFDKFSNIAKNNVIILKENFSNNLLKI 73

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
              + + DG+ K+        I     I  + I  K+ G L   +  G +          
Sbjct: 74  NSYQSNSDGSIKFEFLTDKNLI-----INCMIIKFKN-GFLIKINPFGINF--------- 118

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
           +K + NL+  E++LQ+LL +  L                +G  I+N+++ G+ + L N D
Sbjct: 119 KKEIINLSTNELVLQILLIQQFLDQ------------RKLGN-ITNVIIKGLQDSLLNMD 165

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDL---R 251
            V   ++I ++  GL+  KR+I + TSG   ++ + G+ +  + L IS++A SN L   +
Sbjct: 166 VVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNA-SNSLIYQK 224

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
            +L  +N+ +    LI+  + Y  ++N  R+  EY+++  IND    A  L+++LK I  
Sbjct: 225 IMLKKLNQNWSFLKLIEQIKAYTKITN-NRVVLEYLLIDKINDDLNYANELVELLKNILC 283

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            + LIP+N      Y  S   D       + +   S  IR    LDI  +  QLK
Sbjct: 284 YVLLIPYNL---NNYRTSANLDDFFNILSVNKIRISKRIRKSNDLDI--SFKQLK 333


>gi|15610017|ref|NP_217396.1| hypothetical protein Rv2880c [Mycobacterium tuberculosis H37Rv]
 gi|148662724|ref|YP_001284247.1| hypothetical protein MRA_2905 [Mycobacterium tuberculosis H37Ra]
 gi|1403400|emb|CAA98356.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148506876|gb|ABQ74685.1| hypothetical protein MRA_2905 [Mycobacterium tuberculosis H37Ra]
          Length = 275

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 29/173 (16%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV--D 77
           A+ ++G+P      R  Q+    Y R I D + M+D+   VR  +      ++P ++   
Sbjct: 30  AVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIA---GAMFPNLLTAS 82

Query: 78  EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
             I+CD   TRK L R     + G +  E+V +    R T+C+SSQ GC + C FC TG 
Sbjct: 83  ADITCDAGQTRKTLWR----AVDGTM-FESVLMRYPRRNTVCISSQAGCGMACPFCATGQ 137

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
             L RNL+  EIL QV    + L D               G ++SN+V MGMG
Sbjct: 138 GGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMGMG 177


>gi|325295135|ref|YP_004281649.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065583|gb|ADY73590.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 270

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 127/265 (47%), Gaps = 40/265 (15%)

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           LC+S+QVGC + C FC +G++   RNLT  EI+ Q  L R +L                 
Sbjct: 35  LCISTQVGCPIGCIFCASGSKGFFRNLTFAEIVTQYELLRDIL----------------- 77

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-VPNIARVGEE 234
              I  I + G+GEP  N  NV+K+++   +  GL     ++T+ST+G+ + N  ++   
Sbjct: 78  --PIKGIAIAGIGEPALNISNVEKAVNYFRNE-GL-----KVTISTAGYPLENFKKLIRL 129

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRITFE--YVMLKG 291
               L +S+H + N  R  +    +K  LE L++A   H    S++RR  F+  Y+++K 
Sbjct: 130 NHNGLTLSVHGILNKTREKI--FKKKENLEELLNAVDEHLSESSSSRRKKFQLGYLLIKD 187

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPG--CEYLCSD--QKDIVTFSECIKRSGYS 347
           +ND   +   L ++ K     + L+ +N   G   E +  D  +K  +   E   R   S
Sbjct: 188 LNDDLENLRLLGELAKKYRFTVMLMMYNKVDGFDLEPVTKDEYEKAFLFLREMGVRVTLS 247

Query: 348 SPIRTPRGLDILAACGQLKSLSKRI 372
           +  R    +D L  CG L ++ +RI
Sbjct: 248 NRFR----IDKLGGCGTL-TVGRRI 267


>gi|218662568|ref|ZP_03518498.1| hypothetical protein RetlI_25657 [Rhizobium etli IE4771]
          Length = 72

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 42/57 (73%)

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
           WPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACGQLKS S+R+ K  R
Sbjct: 1   WPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTER 57


>gi|325849044|ref|ZP_08170536.1| ribosomal RNA large subunit methyltransferase N family protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480289|gb|EGC83352.1| ribosomal RNA large subunit methyltransferase N family protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 126

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 10/118 (8%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           EELE+  L +G      + R  Q+++ I+V  I DF  M+D+S+++R  L+++F     +
Sbjct: 11  EELEKIFLDLGFK----KFRAKQVFRQIHVNKINDFSKMTDLSKKMREDLDKYFYFPKIK 66

Query: 75  IVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
           +V E K + D T+K+L     + I     IE V++   +R T+C+SSQVGC + C FC
Sbjct: 67  VVKEFKSNLDKTKKYLFELDDKNI-----IEAVFMEYNNRNTICISSQVGCRMGCKFC 119


>gi|291287083|ref|YP_003503899.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884243|gb|ADD67943.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 256

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 46/204 (22%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +ETVY      GTLC+S+Q GC + C FC +G   L RNL+++E+  QV L +       
Sbjct: 16  LETVYYES---GTLCISTQAGCRMACPFCASGRVGLKRNLSSDELFTQVELHK------- 65

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                        G  I  + + G+GEPL NF+ VK+ +            K    +S +
Sbjct: 66  -------------GNDIKRVTLSGIGEPLDNFEVVKEFI-----------KKSGYPVSVT 101

Query: 223 GFVPNIARVGEEI-----GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---P 274
             VP+  ++ E +     GVML  S HA  ++ R  L+P  +   L+ +  A        
Sbjct: 102 TSVPDTEKLKELLKLSHNGVML--SFHAGFDETRKKLIP--KACQLDEIFHAVSEVWSEI 157

Query: 275 GLSNARRITFEYVMLKGINDSPRD 298
            ++  +++ F Y++L GINDS  +
Sbjct: 158 SVNKRKKVGFNYMLLDGINDSAEE 181


>gi|319789396|ref|YP_004151029.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
 gi|317113898|gb|ADU96388.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
          Length = 271

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 122/260 (46%), Gaps = 43/260 (16%)

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           LCVSSQVGC + C+FC +G + L RNL+AEEI  Q  L   L G+ P             
Sbjct: 35  LCVSSQVGCPVGCAFCASGLKGLKRNLSAEEIYAQYSL---LKGELP------------- 78

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR--RITLSTSGF-VPNIARVG 232
              I  I + G+GEP  N D+V +++          F K   ++T+S++G  +    ++ 
Sbjct: 79  ---IRGIAIAGIGEPALNADSVVEAIG--------RFKKEGLKVTVSSTGCDLEGFRKLV 127

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRITFE--YVML 289
           E     L IS+HAV   +R  L  +  K P+E +++    H    S++RR  F+  Y+++
Sbjct: 128 EAPHNGLTISVHAVKPHIRERLFKL--KQPIEKVLEVVEEHLERSSSSRRKRFQLGYLLI 185

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSD--QKDIVTFSECIKRSG 345
           KG+ND       L ++ K     + L+ +N   G  +  L  +  +K  +   E   R  
Sbjct: 186 KGVNDDEESLKLLAELAKRHRFTVMLMAYNEVEGLPFKGLSEEEYEKAFLKLRELGVRVT 245

Query: 346 YSSPIRTPRGLDILAACGQL 365
            S+  R     D L  CG L
Sbjct: 246 LSNRFRR----DKLGGCGTL 261


>gi|325918563|ref|ZP_08180675.1| hypothetical protein XVE_4704 [Xanthomonas vesicatoria ATCC 35937]
 gi|325535220|gb|EGD07104.1| hypothetical protein XVE_4704 [Xanthomonas vesicatoria ATCC 35937]
          Length = 126

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 8/93 (8%)

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKD 333
           +TFEY ++KGIND P  A  L ++++            K+NLIPFNP+PG  Y  S + +
Sbjct: 7   VTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETE 66

Query: 334 IVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           I  F + +  +   + +R  RG DI AACGQLK
Sbjct: 67  IRAFQKILLDAQVLTMVRRTRGDDIDAACGQLK 99


>gi|313625007|gb|EFR94900.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
           FSL J1-023]
          Length = 130

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 80/141 (56%), Gaps = 13/141 (9%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  +F  + +  ++V E  S DGT K+L +     +     IETV + ++   ++CV++Q
Sbjct: 57  LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRNL 142
           VGC++ C+FC +G  K  R+L
Sbjct: 110 VGCNIGCTFCASGLLKKSRDL 130


>gi|300858725|ref|YP_003783708.1| hypothetical protein cpfrc_01308 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686179|gb|ADK29101.1| hypothetical protein cpfrc_01308 [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 213

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 24/175 (13%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSIIYP 73
           EE   AL ++G+P    + R +QI +  Y R   D + M+D+   VR  + +  F ++  
Sbjct: 58  EERISALKELGLP----KFRANQIARHYYGRLEADPRTMTDLPAGVREKVQEKLFPVLMN 113

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
            I   +     T+K L +     +     +E+V +   +R TLC+SSQ GC + C FC T
Sbjct: 114 PIRAIETDAGETQKTLWQLHDGTL-----LESVLMRYPNRATLCISSQAGCGMACPFCAT 168

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
           G   L RNL+  EI+ QV  A + +               + G ++SNIV MGMG
Sbjct: 169 GQGGLDRNLSTAEIVDQVRAASATMN--------------AEGGRLSNIVFMGMG 209


>gi|295113298|emb|CBL31935.1| hypothetical protein [Enterococcus sp. 7L76]
          Length = 114

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDI 334
           N RR+TFEY+ML  +ND P  A  L  +L+     + +NLIP+NP     +Y  S ++ +
Sbjct: 11  NNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAV 70

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQ 378
           + F + +K++G +  IR   G DI AACGQL+S   +  KV  Q
Sbjct: 71  LKFYDVLKKNGINCVIRKEHGTDIDAACGQLRSKQMKKEKVKNQ 114


>gi|313620453|gb|EFR91838.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
           FSL S4-378]
          Length = 129

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 13/140 (9%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  +F  + +  ++V E  S DGT K+L +     +     IETV + ++   ++CV++Q
Sbjct: 57  LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVRN 141
           VGC++ C+FC +G  K  R+
Sbjct: 110 VGCNIGCTFCASGLLKKSRD 129


>gi|315281046|ref|ZP_07869770.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii
           FSL S4-120]
 gi|313615310|gb|EFR88731.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii
           FSL S4-120]
          Length = 128

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 77/139 (55%), Gaps = 13/139 (9%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+    L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  +F  + +  ++V E  S DGT K+L +     +     IETV + ++   ++CV++Q
Sbjct: 57  LTANFVMNTLEEQVVQE--SADGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVR 140
           VGC++ C+FC +G  K  R
Sbjct: 110 VGCNIGCTFCASGLLKKSR 128


>gi|313610614|gb|EFR85708.1| ribosomal RNA large subunit methyltransferase N [Listeria
           monocytogenes FSL F2-208]
          Length = 129

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 78/139 (56%), Gaps = 13/139 (9%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L  +F  + +  ++V E  S DGT K+L +     +     IETV + ++   ++CV++Q
Sbjct: 57  LTANFVMNTLEEQVVQE--SADGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109

Query: 122 VGCSLTCSFCYTGTQKLVR 140
           VGC++ C+FC +G  K  R
Sbjct: 110 VGCNIGCTFCASGLLKKSR 128


>gi|190150593|ref|YP_001969118.1| UPF0063 protein yfgB [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|189915724|gb|ACE61976.1| UPF0063 protein yfgB [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
          Length = 110

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 49/84 (58%)

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           +T EYV+L  +ND    A  L ++LK  P KINLIP+NP+P   Y  S    +  F + +
Sbjct: 1   MTIEYVLLDHVNDGTEHAHQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTL 60

Query: 342 KRSGYSSPIRTPRGLDILAACGQL 365
              G++  +R  RG DI AACGQL
Sbjct: 61  MEYGFTVIVRKTRGDDIDAACGQL 84


>gi|226498404|ref|NP_001141738.1| hypothetical protein LOC100273870 [Zea mays]
 gi|194705752|gb|ACF86960.1| unknown [Zea mays]
          Length = 105

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 7/110 (6%)

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MG+P  N DNV K+ +I     G  FS R++T+STSGFVP +        ++ A SL+A 
Sbjct: 1   MGQPFHNIDNVIKASAIMVHEQG-HFSPRKVTVSTSGFVPQLG-----TQLLAAASLNAR 54

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVMLKGINDS 295
           ++++RN ++ INRK  L +L+   R    L   ++I   EY ML G+N S
Sbjct: 55  TDEVRNWIMTINRKENLNLLLGTLRGELNLRKKKQIVLSEYAMLSGVNGS 104


>gi|168027205|ref|XP_001766121.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682764|gb|EDQ69180.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 180

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 27/190 (14%)

Query: 81  SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140
           S DGT + LL      +   V I   Y    SR T CV    GC+L C+FC TG     R
Sbjct: 12  SKDGTVQVLLSLEDDRLVEAVGIPVTYRKGGSRLTDCV----GCALNCTFCCTGKDGFAR 67

Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
           NL + EI+ +  + + LL                  + ++N+V MGMGEPL N   V   
Sbjct: 68  NLKSHEIVDRACILQDLL-----------------RKPMTNMVFMGMGEPLINLGAVLDD 110

Query: 201 LSIASDSMGL-----SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNIL 254
               +D + +       +++ + + T G +  I R+   +   ML +SLHA +  LR+ L
Sbjct: 111 HLSKTDVLYIIIQESKTAQQMMVILTVGILNTIRRLAPHKFHSMLVVSLHAPNQGLRSKL 170

Query: 255 VPINRKYPLE 264
           VP   +Y L+
Sbjct: 171 VPSANRYSLD 180


>gi|299535923|ref|ZP_07049243.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
           fusiformis ZC1]
 gi|298728675|gb|EFI69230.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
           fusiformis ZC1]
          Length = 94

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 54/89 (60%)

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           ++FEY ++ G NDS   A  L  ++KGI   +NLIP N  P  +Y+ + +  I  F + +
Sbjct: 1   MSFEYGLMSGENDSVEIAEELSALIKGIKCHVNLIPVNYVPERDYVRTSRSQIFAFEKTL 60

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           K++G +  IR  +G DI AACGQL++  +
Sbjct: 61  KKNGINVTIRREQGSDIAAACGQLRAQER 89


>gi|218673229|ref|ZP_03522898.1| hypothetical protein RetlG_17291 [Rhizobium etli GR56]
          Length = 75

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 40/58 (68%)

Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
           P P   Y CS  + I  F++ I  +GY+SPIRTPRG DILAACGQLKS S+R+ K  R
Sbjct: 3   PGPAPNYQCSGWEQIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTER 60


>gi|154492443|ref|ZP_02032069.1| hypothetical protein PARMER_02077 [Parabacteroides merdae ATCC
           43184]
 gi|154087668|gb|EDN86713.1| hypothetical protein PARMER_02077 [Parabacteroides merdae ATCC
           43184]
          Length = 260

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 89/213 (41%), Gaps = 35/213 (16%)

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R  + VS+  GC + C FC TG  K  RNLTA+EI+ QV  A    G F  C+  E    
Sbjct: 58  RWMIGVSTMSGCPVRCKFCATGNMKRYRNLTADEIVGQVEFAIEQAG-FDPCDANE---- 112

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
                    I    MGEP  N + VK+++   S+          I  +T  +V  I   G
Sbjct: 113 -------FKINYTRMGEPFLNIEAVKEAIGRISE----------IYPNTHHYVSTIGIKG 155

Query: 233 EEI-----GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            +       V L ISLH+   + RN L+P    YP +M I+        SN +      +
Sbjct: 156 SDFSFVKGNVTLQISLHSFDEEKRNWLIP----YPKKMSIEELGRIRTESNLKTT----I 207

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
            L  +N+S  D   L K        + L P NP
Sbjct: 208 NLTLVNESDFDTEKLEKYFDKEYFFVKLSPINP 240


>gi|217074618|gb|ACJ85669.1| unknown [Medicago truncatula]
          Length = 221

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 56/117 (47%), Gaps = 20/117 (17%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P   R TLC+SSQVGC + C FC TG+     NL++ EI                   +E
Sbjct: 119 PGGLRATLCISSQVGCKMGCKFCATGSMGFKSNLSSGEI-------------------VE 159

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGF 224
            +V  S    I N+V MGMGEPL N+  V +S+ I S S   LS  + R+      F
Sbjct: 160 QLVHASAFAHIRNVVFMGMGEPLNNYSAVVESVRIMSGSPFQLSLKRYRLNCWHHSF 216


>gi|255030761|ref|ZP_05302712.1| hypothetical protein LmonL_19616 [Listeria monocytogenes LO28]
          Length = 137

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 9/114 (7%)

Query: 47  IRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIE 104
           ++ F+ MS++ +E   LL  +F  + +  ++V E  S DGT K+L +     +     IE
Sbjct: 3   VKTFEEMSNVPKETIELLTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IE 55

Query: 105 TVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
           TV + ++   ++CV++QVGC++ C+FC +G  K  R+LTA EI+ Q++  +  L
Sbjct: 56  TVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL 109


>gi|294955468|ref|XP_002788520.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239904061|gb|EER20316.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 242

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 84/186 (45%), Gaps = 25/186 (13%)

Query: 214 KRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           +R IT+ST G +P I  +  +  GV LA+SLHA +  LR  +VP  + + ++ L+ A   
Sbjct: 9   QRCITVSTVGVIPRIRSLAHDASGVKLALSLHAPTQALREKIVPSAKAWSIDELMAAVDE 68

Query: 273 YPGLSNARRIT-----------------FEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
           Y   S A R+                   EYV+++ +ND+   A  L  ++K   A +N 
Sbjct: 69  Y---SEASRVAGRPDGSGGGGRKKGSVMIEYVVIRDVNDTEECAHQLGVLMKNRKAVVNF 125

Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAACGQLKSLSKRIP 373
           IP+N            +  VT    I +  Y   +  R   G DI AACGQL    KR  
Sbjct: 126 IPYNAVDNGSNFEPPLESSVTRMVSILKDVYGVRVYYRRHHGRDIDAACGQLA--KKRPR 183

Query: 374 KVPRQE 379
            VP  E
Sbjct: 184 MVPDLE 189


>gi|194698458|gb|ACF83313.1| unknown [Zea mays]
 gi|194698542|gb|ACF83355.1| unknown [Zea mays]
 gi|194707874|gb|ACF88021.1| unknown [Zea mays]
 gi|195621242|gb|ACG32451.1| hypothetical protein [Zea mays]
          Length = 89

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 6/85 (7%)

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MG+P  N DNV K+ +I     G  FS R++T+STSGFVP +        ++ A SL+A 
Sbjct: 1   MGQPFHNIDNVIKASAIMVHEQG-HFSPRKVTVSTSGFVPQLG-----TQLLAAASLNAR 54

Query: 247 SNDLRNILVPINRKYPLEMLIDACR 271
           ++++RN ++ INRK  L +L+   R
Sbjct: 55  TDEVRNWIMTINRKENLNLLLGTLR 79


>gi|325116881|emb|CBZ52434.1| hypothetical protein NCLIV_022230 [Neospora caninum Liverpool]
          Length = 157

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 20/125 (16%)

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G    +R L+A+EI  QVL                       G KI ++ +MGMGEPL N
Sbjct: 51  GKSGFLRQLSADEITDQVLF------------------FLRQGIKIDSVSLMGMGEPLAN 92

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRN 252
              V  +L I +D +  +FS R++ +ST G +P I ++ EE   V LA SLH+   + RN
Sbjct: 93  -PKVFDALRILTDPLLFNFSARKLAVSTLGVLPGIKKLTEEHPQVNLAFSLHSPFPEERN 151

Query: 253 ILVPI 257
           +LV +
Sbjct: 152 LLVSL 156


>gi|218461239|ref|ZP_03501330.1| hypothetical protein RetlK5_17732 [Rhizobium etli Kim 5]
          Length = 73

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 37/52 (71%)

Query: 5  KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI 56
          +K SLIG+ REE+  AL + G+ +  ++MR +Q+W  IYVRG+ DF  M+++
Sbjct: 22 EKPSLIGLSREEMAAALTEKGVAENQIKMRVAQLWNCIYVRGVSDFDRMTNV 73


>gi|81999761|sp|Q5UP06|YR756_MIMIV RecName: Full=Uncharacterized protein R756
 gi|55417366|gb|AAV51016.1| putative Fe-S-cluster redox enzyme [Acanthamoeba polyphaga
           mimivirus]
          Length = 298

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 113/273 (41%), Gaps = 41/273 (15%)

Query: 118 VSSQVGCSLTCSFCY-TGT-QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           +SS  GC + C FC+ T T Q   R+++ EE   Q+    S   +  G    E   I  V
Sbjct: 37  LSSHNGCKMACKFCWLTATNQTNFRHVSIEEYANQLDTVLSHGKEIDG----ENSRIVRV 92

Query: 176 GRKISNIVMMGMGEPLC------NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229
                NI +M  GE L       N+D   K L    +    S     + ++ S  +P + 
Sbjct: 93  -----NINLMSRGEALANKNLVNNYDKFHKELQYIINKYDYS----EMKMNVSTIMPKVV 143

Query: 230 RVGEEIGVM------LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
              + I +       +  SL++ +   R   +P + +Y  E+ +   R +   ++   I 
Sbjct: 144 EHKKLIDIFGDRPVNIYYSLYSTNESFRKKWIPNSMRY--EIALRKLREFQKETD-NTIA 200

Query: 284 FEYVMLKGINDSPRDALNLIKILKGI---PAKINLIPFNPWPG-CEYLCSDQKDIVTFSE 339
           F + +++  ND+  D  ++ +I++ +     K NL+ FNP P    Y     + +    E
Sbjct: 201 FHFAVIEDENDNLSDVQSMAEIIRSMNFSKTKFNLVRFNPHPSMSNYKEPSVEKLEKIYE 260

Query: 340 CIKRSGYSSPIRTPR-------GLDILAACGQL 365
            ++       I+T R       G D+LA+CG  
Sbjct: 261 ILQSVCNDETIKTNRSRIVPRIGQDVLASCGMF 293


>gi|311978166|ref|YP_003987286.1| putative radical SAM enzyme [Acanthamoeba polyphaga mimivirus]
 gi|308205034|gb|ADO18835.1| putative radical SAM enzyme [Acanthamoeba polyphaga mimivirus]
          Length = 298

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 113/273 (41%), Gaps = 41/273 (15%)

Query: 118 VSSQVGCSLTCSFCY-TGT-QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           +SS  GC + C FC+ T T Q   R+++ EE   Q+    S   +  G    E   I  V
Sbjct: 37  LSSHNGCKMACKFCWLTATNQTNFRHVSIEEYANQLDTVLSHGKEIDG----ENSRIVRV 92

Query: 176 GRKISNIVMMGMGEPLC------NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229
                NI +M  GE L       N+D   K L    +    S     + ++ S  +P + 
Sbjct: 93  -----NINLMSRGEALANKNLVNNYDKFHKELQYIINKYDYS----EMKMNVSTIMPKVI 143

Query: 230 RVGEEIGVM------LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
              + I +       +  SL++ +   R   +P + +Y  E+ +   R +   ++   I 
Sbjct: 144 EHKKLIDIFGDRPVNIYYSLYSTNESFRKKWIPNSMRY--EIALRKLREFQKETD-NTIA 200

Query: 284 FEYVMLKGINDSPRDALNLIKILKGI---PAKINLIPFNPWPG-CEYLCSDQKDIVTFSE 339
           F + +++  ND+  D  ++ +I++ +     K NL+ FNP P    Y     + +    E
Sbjct: 201 FHFAVIEDENDNLSDVQSMAEIIRSMNFSKTKFNLVRFNPHPSMSNYKEPSVEKLEKIYE 260

Query: 340 CIKRSGYSSPIRTPR-------GLDILAACGQL 365
            ++       I+T R       G D+LA+CG  
Sbjct: 261 ILQSVCNDETIKTNRSRIVPRIGQDVLASCGMF 293


>gi|149922669|ref|ZP_01911096.1| hypothetical protein PPSIR1_19869 [Plesiocystis pacifica SIR-1]
 gi|149816466|gb|EDM75965.1| hypothetical protein PPSIR1_19869 [Plesiocystis pacifica SIR-1]
          Length = 291

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 106/256 (41%), Gaps = 33/256 (12%)

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
           IV+E    DG R++++      +     +E V     S   LCVSSQVGC++ C FC +G
Sbjct: 4   IVEEHREGDGNRRFVV-----GLDDGASVEAVLYRLDS---LCVSSQVGCAVGCPFCASG 55

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              L R L   E+  QV   R+          IE    P     +  + + G+GEPL N 
Sbjct: 56  ANGLDRPLRLGELTGQVEAVRA---------HIEATDGPEAALALRRVTVSGVGEPLHNH 106

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA-------ISLHAVS 247
           + V + +    +           +L+TSG    + R+GE +    A        S+HA  
Sbjct: 107 EPVAQFVRWCRE------RDMPASLTTSGG--PLRRLGEWLDPDAAPPHNGITFSIHAGR 158

Query: 248 NDLRNILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
              R   VP      PL  L+         S  R++   Y++L  +ND   +    ++  
Sbjct: 159 EATRARTVPRGPALGPLFSLLGEAIPRLSRSRKRKLALAYLLLADLNDGDEEIDAFLERA 218

Query: 307 KGIPAKINLIPFNPWP 322
             +  KI+L  +NP P
Sbjct: 219 APLGVKIHLYRYNPVP 234


>gi|320158412|ref|YP_004190790.1| radical SAM domain-containing protein [Vibrio vulnificus MO6-24/O]
 gi|319933724|gb|ADV88587.1| radical SAM domain protein [Vibrio vulnificus MO6-24/O]
          Length = 274

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 27/146 (18%)

Query: 118 VSSQVGCSLTCSFCYTGTQKLV-----RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           +S+Q GC + C FC     KL      RNLTA+E++ QV  A    G  P  ED +    
Sbjct: 66  ISTQSGCPIKCKFC--AVNKLTARQGWRNLTADEMVAQVEWAIEQAGHDP--EDAQ---- 117

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
                 +  I+   MGEP  N  NV +++      +   + K RI +ST GF  +  R+ 
Sbjct: 118 ------LFRILFTRMGEPAMNVKNVVEAVR----RLKARYPKVRIQVSTIGFGKHSQRLV 167

Query: 233 EEI----GVMLAISLHAVSNDLRNIL 254
             +     + L  S+H+ SN+ R  L
Sbjct: 168 NALYEFDNIELQFSIHSTSNEYRQWL 193


>gi|294942772|ref|XP_002783678.1| hypothetical protein Pmar_PMAR008379 [Perkinsus marinus ATCC 50983]
 gi|239896201|gb|EER15474.1| hypothetical protein Pmar_PMAR008379 [Perkinsus marinus ATCC 50983]
          Length = 188

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 22/153 (14%)

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT--------------- 283
           LA+SLHA +  LR  +VP  + + ++ L+ A   Y   S A R+                
Sbjct: 2   LALSLHAPNQALREKIVPSAKAWSIDELMAAVDEY---SEASRVAGRPDGSGGGGRKKGS 58

Query: 284 --FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
              EYV+++ +ND+   A  L  ++K   A +N IP+N            +  VT    I
Sbjct: 59  VMIEYVVIRDVNDTEECAHQLGVLMKNRKAVVNFIPYNAVDNGSNFEPPLESSVTRMVSI 118

Query: 342 KRSGYSSPI--RTPRGLDILAACGQLKSLSKRI 372
            +  Y   +  R   G DI AACGQL     R+
Sbjct: 119 LKDVYGVRVYYRRHHGRDIDAACGQLAKKRPRM 151


>gi|158320747|ref|YP_001513254.1| radical SAM domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158140946|gb|ABW19258.1| Radical SAM domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 455

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 30/253 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            LC+     C++ C +C+   G  K VR+L +EE+               G + I+ ++ 
Sbjct: 94  ALCLHIAHDCNIRCKYCFASQGDFKGVRSLMSEEV---------------GKKAIDFLLE 138

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITLSTSGFV---PNI 228
            S GR+   +   G GEPL NF+ VKK +     S    F+K  R T++T+G +    N+
Sbjct: 139 NSGGRRNLEVDFFG-GEPLMNFETVKKIVDYGR-SKEKEFNKNIRFTMTTNGVLLNDENM 196

Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
           A + E +  V+L+I      ND  N+   IN +   ++++        L   R       
Sbjct: 197 AYINENMHNVVLSIDGRREVND--NMRYAINGQGTYDIIVPKFLKMAELRGHRNYYVRGT 254

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG-Y 346
             K   D  +D L+L  +  G  +  ++ P    P  +Y  S++     F +  + S  Y
Sbjct: 255 FTKENLDFAKDVLHLADL--GFKS-TSMEPVVAEPHHDYAISEEDLQTVFDQYEELSKEY 311

Query: 347 SSPIRTPRGLDIL 359
              I+  +G D  
Sbjct: 312 VKRIKEGKGFDFF 324


>gi|301119925|ref|XP_002907690.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262106202|gb|EEY64254.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 170

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 16/106 (15%)

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKRSGY 346
           ML G+NDS   A  L K+L+     +NLIP+N    G ++     +DI  F   + R  Y
Sbjct: 1   MLAGVNDSIETAHTLGKLLQNRSVHVNLIPYNTTDVGAQFQSPSAEDIRAF-HAVLREPY 59

Query: 347 S--SPIRTPRGLDILAACGQL------------KSLSKRIPKVPRQ 378
           +  + IR   G DI  ACGQL            + L  R  K PR+
Sbjct: 60  NLKATIRENHGTDIDGACGQLALKNKPDGSRDIEDLGPRRTKAPRK 105


>gi|310829213|ref|YP_003961570.1| radical SAM domain-containing protein [Eubacterium limosum KIST612]
 gi|308740947|gb|ADO38607.1| radical SAM domain-containing protein [Eubacterium limosum KIST612]
          Length = 449

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 20/183 (10%)

Query: 106 VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165
           VY        LC+     C+L C++C+        +   E++L+ + + +          
Sbjct: 82  VYKNHDLVKALCLHVAHDCNLKCNYCFASQG----DFNGEKLLMPLEVGKKA-------- 129

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
            I+ ++  S  R+   +   G GEPL NFD VK+ +  A         K + T++T+G +
Sbjct: 130 -IDFIIEQSKDRQNLEVDFFG-GEPLMNFDVVKELVDYARSKEESYHKKFKFTITTNGVL 187

Query: 226 ---PNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
               N+A + E +  V+L++      ND  N+   +N K   +++ID  +    +   ++
Sbjct: 188 LDDENMAYIDENMDNVVLSLDGRKCVND--NMRRTVNDKGSFDIIIDKIKKMAAMREGKK 245

Query: 282 ITF 284
             +
Sbjct: 246 DYY 248


>gi|313634809|gb|EFS01238.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL N1-067]
 gi|313639434|gb|EFS04296.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL S4-171]
          Length = 78

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 8/84 (9%)

Query: 4  LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
          ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1  MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64 LNQHF--SIIYPEIVDEKISCDGT 85
          L  +F  S +  ++V E  S DGT
Sbjct: 57 LTANFVMSTLEEQVVQE--STDGT 78


>gi|168699972|ref|ZP_02732249.1| hypothetical protein GobsU_10628 [Gemmata obscuriglobus UQM 2246]
          Length = 313

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 110/265 (41%), Gaps = 35/265 (13%)

Query: 118 VSSQVGCSLTCSFCY-TGT-QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           +SSQ GC+  C  C+ T T Q  +R+ T  E L Q   A ++L  +      EG    +V
Sbjct: 49  LSSQTGCAQACRMCHLTATGQTHLRDTTFNEFLEQ---AETVLAHY----RREGKPARAV 101

Query: 176 GRKISNIVMMGMGEPLCN------FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229
                +  +M  GEPL +       D +   LS  +   GL       T+    F     
Sbjct: 102 -----HFNLMARGEPLASKVIATRGDELLGELSRLAVGSGLRPRHLISTIYPKAFGD--- 153

Query: 230 RVGEEIGVM----LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
           R  E++ V+    +  S+++VS   R   +P  + +P E+ +D    +   S  + +   
Sbjct: 154 RALEDVFVVHQPEIHYSIYSVSERFRRRWLP--KAHPAEVALDRLAAWQRHS-LKLVVLH 210

Query: 286 YVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343
           +  + G ND+  D   +   L  + + A IN++ +NP+    +     + +V  +  I R
Sbjct: 211 HAYIAGENDTEGDVHAICDALEERKLMAHINVVRYNPFDPARHGTEPPEAVVERNAAIYR 270

Query: 344 S---GYSSPIRTPRGLDILAACGQL 365
               G    +    G D+ A+CG  
Sbjct: 271 ERLPGARVVVIARVGFDVAASCGMF 295


>gi|15642910|ref|NP_227951.1| hypothetical protein TM0136 [Thermotoga maritima MSB8]
 gi|4980628|gb|AAD35229.1|AE001699_6 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 329

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 120/296 (40%), Gaps = 47/296 (15%)

Query: 99  GPVEIETVYIPEKSRGTLC-------------------VSSQVGCSLTCSFCYTGTQKLV 139
           G  E+  VY+ E SRG L                    VS+  GC + C  C  G     
Sbjct: 26  GKEEVAYVYLGETSRGNLVEFVESIQPPVPREKKWVLIVSTLAGCPVGCLMCDAGG--FY 83

Query: 140 R-NLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD-- 195
           R  L+A+EI  Q+  L +S    +P         IPS   KI       MGEP  N    
Sbjct: 84  RGKLSADEIFEQIDFLVKS---RYPNGR------IPSEKFKIQ---FARMGEPALNEAVL 131

Query: 196 NVKKSLSIASDSMGLSFSKRRIT-LSTSGFVPNIARVGEEI---GVMLAISLHAVSNDLR 251
           +V K L    ++ GL  S   +    T  F  ++ ++ E+       L  S+H+     R
Sbjct: 132 DVLKELPARYEAPGLMPSISTVAPCGTDSFFEDLLKIKEKHYRGKFQLQFSIHSTDEKER 191

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
           + ++P+ +K+ LE + +  + +    N R+IT  + + +  +  P+    +I++      
Sbjct: 192 DQIIPV-KKWSLEKISEFGKRFVK-ENDRKITLNFAVAQEYSLDPK---VIIRVFDPEKF 246

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            + + P NP    +    +    V   E +K   +   ++   G +++ + G+L+ 
Sbjct: 247 LVKITPVNPTYRSKENNLNSDVDVERKELLKHRNFIEELKKA-GFEVILSIGELEE 301


>gi|326333648|ref|ZP_08199885.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1]
 gi|325948554|gb|EGD40657.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1]
          Length = 57

 Score = 43.5 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 29/53 (54%)

Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           L P NP PG ++  SD  D   F   ++  G S+ +R  RG +I  ACGQL +
Sbjct: 3   LCPLNPTPGSKWTASDPADEREFVRRLEAKGISTTVRDTRGREIDGACGQLAA 55


>gi|323704620|ref|ZP_08116198.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536082|gb|EGB25855.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 453

 Score = 43.5 bits (101), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 35/176 (19%)

Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLG 159
           E  + +  + S   LC+     C+L C +C+   G     R L ++E+  +         
Sbjct: 82  EAASHFTAKDSVKALCLHVSHDCNLRCEYCFAQKGDYNTGRKLMSKEVAFKA-------- 133

Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RIT 218
                  ++ +V  S GR+   I   G GEPL NFD VK ++     S+   F+K+   T
Sbjct: 134 -------VDYLVKNSSGRRNIEIDFFG-GEPLLNFDVVKATVDYGR-SLEDKFNKKFYFT 184

Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           ++T+G + +  ++              ++ ++ N+++ I+ +  +    D  RHY 
Sbjct: 185 ITTNGTLLDDEKI------------KFLNKNMDNVVISIDGRKEIH---DEIRHYA 225


>gi|302854259|ref|XP_002958639.1| hypothetical protein VOLCADRAFT_99921 [Volvox carteri f.
           nagariensis]
 gi|300256028|gb|EFJ40305.1| hypothetical protein VOLCADRAFT_99921 [Volvox carteri f.
           nagariensis]
          Length = 438

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 58/153 (37%), Gaps = 44/153 (28%)

Query: 77  DEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIP------------EKSRGTLCVSSQVG 123
           D   + DGTRK + R       GG   IETV IP            E  R TLCVSSQV 
Sbjct: 191 DVTPASDGTRKLVFRVTEGEAAGG--RIETVLIPWFRDYDPRVGRREHPRYTLCVSSQV- 247

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
                                       L+A+ LL   P           +    I+NIV
Sbjct: 248 ----------------------------LVAQRLLDQDPARPPAATAATAATAAPITNIV 279

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
            MGMGEPL N   V  ++ I +   GL FS  R
Sbjct: 280 FMGMGEPLHNCTAVFAAIDILTHRRGLGFSASR 312


>gi|148269924|ref|YP_001244384.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
 gi|170288609|ref|YP_001738847.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
 gi|281412195|ref|YP_003346274.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
 gi|147735468|gb|ABQ46808.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
 gi|170176112|gb|ACB09164.1| Radical SAM domain protein [Thermotoga sp. RQ2]
 gi|281373298|gb|ADA66860.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
          Length = 311

 Score = 42.7 bits (99), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 25/220 (11%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCED 166
           IP + +  L VS+  GC + C  C  G     + L+A+EI  Q+  L +S    +P    
Sbjct: 36  IPREKKWVLIVSTLAGCPVGCLMCDAGGFYKGK-LSADEIFEQIDFLVKS---RYPNGR- 90

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRIT-LSTSG 223
                IPS   KI       MGEP  N    +V K L +  ++ GL  S   +    T  
Sbjct: 91  -----IPSEKFKIQ---FARMGEPALNEAVLDVLKELPVRYEAPGLMPSISTVAPHGTDS 142

Query: 224 FVPNIARVGEEI---GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
           F   + ++ E+       L  S+H+     R+ ++P+ +K+ L+ + +  + +    N R
Sbjct: 143 FFEELLKIKEKHYRGKFQLQFSIHSTDEKERDRIIPV-KKWSLDKISEFGKRFVK-ENDR 200

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           +IT  + + +  +  P   + +    K +   + + P NP
Sbjct: 201 KITLNFAVAQEYSLDPEVIIEVFDPEKFL---VKITPVNP 237


>gi|281417626|ref|ZP_06248646.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|281409028|gb|EFB39286.1| Radical SAM domain protein [Clostridium thermocellum JW20]
          Length = 450

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 22/141 (15%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            LC+     C+L C +C+  T      RN+ + E+               G + I+ ++ 
Sbjct: 95  ALCLHISHDCNLRCKYCFASTGNFGGQRNMMSLEV---------------GKKAIDFLIS 139

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIA 229
            S  RK   I   G GEP+ NFD VK  +  A           R TL+T+G +    NI 
Sbjct: 140 ESGNRKNLEIDFFG-GEPMMNFDVVKGIIEYARQKEKEHNKNFRFTLTTNGLLLNDENIK 198

Query: 230 RVGEEI-GVMLAISLHAVSND 249
            + E +  ++L+I      ND
Sbjct: 199 YINENMQNIVLSIDGRKEVND 219


>gi|125973423|ref|YP_001037333.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
 gi|256004402|ref|ZP_05429383.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|125713648|gb|ABN52140.1| Radical SAM [Clostridium thermocellum ATCC 27405]
 gi|255991686|gb|EEU01787.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|316940341|gb|ADU74375.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 22/141 (15%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            LC+     C+L C +C+  T      RN+ + E+               G + I+ ++ 
Sbjct: 95  ALCLHISHDCNLRCKYCFASTGNFGGQRNMMSLEV---------------GKKAIDFLIS 139

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIA 229
            S  RK   I   G GEP+ NFD VK  +  A           R TL+T+G +    NI 
Sbjct: 140 ESGNRKNLEIDFFG-GEPMMNFDVVKGIIEYARQKEKEHNKNFRFTLTTNGLLLNDENIK 198

Query: 230 RVGEEI-GVMLAISLHAVSND 249
            + E +  ++L+I      ND
Sbjct: 199 YINENMQNIVLSIDGRKEVND 219


>gi|323706427|ref|ZP_08117989.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534212|gb|EGB24001.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 459

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 18/111 (16%)

Query: 115 TLCVSSQVGCSLTCSFCY--TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            +C++    C+L CS+C+  TG  K  R L   E+               G + I+ ++ 
Sbjct: 95  AICLNVAHDCNLRCSYCFASTGDFKGGRKLMPYEV---------------GKKAIDFLIK 139

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
            S  RKI  +   G GEPL NFD VKK +    +         + T++T+G
Sbjct: 140 NSGNRKIVEVDFFG-GEPLLNFDVVKKLVDYGREEAKKYGKTIKYTITTNG 189


>gi|169335672|ref|ZP_02862865.1| hypothetical protein ANASTE_02092 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258410|gb|EDS72376.1| hypothetical protein ANASTE_02092 [Anaerofustis stercorihominis DSM
           17244]
          Length = 454

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 27/139 (19%)

Query: 97  IGGPVEIET---VYIPEK-------SRG---TLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
           IG   E+E    +Y PEK        +G    +C+     C+L C +C+        N  
Sbjct: 61  IGELKELEAENRLYTPEKKVNRKLYEKGIVKAMCLHVSHDCNLACRYCFASGG----NFN 116

Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
            ++ ++ +  A+  + DF         +I + G K+   V    GEPL NFD VKK++  
Sbjct: 117 MKKEVMNIETAKKAI-DF---------IISNSGNKVHLEVDFFGGEPLLNFDVVKKTVEY 166

Query: 204 ASDSMGLSFSKRRITLSTS 222
           A +         R TL+T+
Sbjct: 167 AKEEAKKHNKIFRFTLTTN 185


>gi|154249178|ref|YP_001410003.1| radical SAM domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153114|gb|ABS60346.1| Radical SAM domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 329

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 26/220 (11%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCED 166
           IP   +  L VS+  GC + C  C  G     R L+ EEIL Q+L L RS   D    E 
Sbjct: 53  IPRDKKWVLIVSTMDGCPVGCKMCDAGGY-YKRRLSKEEILAQILYLIRSRYEDEVPVEK 111

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK--KSLSIASDSMGLSFSKRRIT-LSTSG 223
            +             I    +GEP  N + +K    L    D+ GL  S   +  +  +G
Sbjct: 112 FK-------------IQFARVGEPALNDEVLKVLDELPQIIDAPGLMPSISTVAPIGRNG 158

Query: 224 FVPNIARVGEEI---GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
           +   +  + E+       L  S+H+     R+ ++P+ +K+    + +    +    + R
Sbjct: 159 WFERLIEIKEKHYRGKFQLQFSIHSTDEKQRDEIIPV-KKWSFREISEYGEKFVTTED-R 216

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           +IT  + + K      R  +N     K +   I + P NP
Sbjct: 217 KITLNFALAKENIADARVIMNFFNPEKFL---IKITPVNP 253


>gi|306844432|ref|ZP_07477022.1| endonuclease III [Brucella sp. BO1]
 gi|306275245|gb|EFM56995.1| endonuclease III [Brucella sp. BO1]
          Length = 248

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190
           Y  T  L RN     ILL   L R   G+ PG  D E M +P VGRK +N+V+ M  G+P
Sbjct: 102 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELMKLPGVGRKTANVVLNMAFGQP 160

Query: 191 LCNFDN 196
               D 
Sbjct: 161 TMAVDT 166


>gi|62289142|ref|YP_220935.1| endonuclease III [Brucella abortus bv. 1 str. 9-941]
 gi|82699081|ref|YP_413655.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella
           melitensis biovar Abortus 2308]
 gi|189023417|ref|YP_001934185.1| Nth, endonuclease III [Brucella abortus S19]
 gi|254690468|ref|ZP_05153722.1| Nth, endonuclease III [Brucella abortus bv. 6 str. 870]
 gi|254696588|ref|ZP_05158416.1| Nth, endonuclease III [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731501|ref|ZP_05190079.1| Nth, endonuclease III [Brucella abortus bv. 4 str. 292]
 gi|256258724|ref|ZP_05464260.1| Nth, endonuclease III [Brucella abortus bv. 9 str. C68]
 gi|260546439|ref|ZP_05822179.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260756021|ref|ZP_05868369.1| endonuclease III [Brucella abortus bv. 6 str. 870]
 gi|260759245|ref|ZP_05871593.1| endonuclease III [Brucella abortus bv. 4 str. 292]
 gi|260760967|ref|ZP_05873310.1| endonuclease III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885042|ref|ZP_05896656.1| endonuclease III [Brucella abortus bv. 9 str. C68]
 gi|297247558|ref|ZP_06931276.1| endonuclease III [Brucella abortus bv. 5 str. B3196]
 gi|62195274|gb|AAX73574.1| Nth, endonuclease III [Brucella abortus bv. 1 str. 9-941]
 gi|82615182|emb|CAJ10121.1| Helix-hairpin-helix motif:HhH-GPD:Helix-hairpin-helix DNA-binding,
           class 1:Endonuclease III, HhH:Endonuclease III/Nth
           [Brucella melitensis biovar Abortus 2308]
 gi|189018989|gb|ACD71711.1| Nth, endonuclease III [Brucella abortus S19]
 gi|260096546|gb|EEW80422.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260669563|gb|EEX56503.1| endonuclease III [Brucella abortus bv. 4 str. 292]
 gi|260671399|gb|EEX58220.1| endonuclease III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676129|gb|EEX62950.1| endonuclease III [Brucella abortus bv. 6 str. 870]
 gi|260874570|gb|EEX81639.1| endonuclease III [Brucella abortus bv. 9 str. C68]
 gi|297174727|gb|EFH34074.1| endonuclease III [Brucella abortus bv. 5 str. B3196]
          Length = 248

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190
           Y  T  L RN     ILL   L R   G+ PG  D E M +P VGRK +N+V+ M  G+P
Sbjct: 102 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELMKLPGVGRKTANVVLNMAFGQP 160

Query: 191 LCNFDN 196
               D 
Sbjct: 161 TMAVDT 166


>gi|237814635|ref|ZP_04593633.1| endonuclease III [Brucella abortus str. 2308 A]
 gi|237789472|gb|EEP63682.1| endonuclease III [Brucella abortus str. 2308 A]
          Length = 260

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190
           Y  T  L RN     ILL   L R   G+ PG  D E M +P VGRK +N+V+ M  G+P
Sbjct: 114 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELMKLPGVGRKTANVVLNMAFGQP 172

Query: 191 LCNFDN 196
               D 
Sbjct: 173 TMAVDT 178


>gi|240169459|ref|ZP_04748118.1| Fe-S oxidoreductase [Mycobacterium kansasii ATCC 12478]
          Length = 491

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 27/163 (16%)

Query: 123 GCSLTCSFCYTGTQKLVR-NLTAEEI--LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC++ C++CY   +   R  L  + I  L+ VL+AR+                       
Sbjct: 116 GCNIACTYCYDYDKTRFRARLDDDRIHELVDVLIARN---------------------SH 154

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGV 237
            +I   G GEPL  +D +K+++S A +           ++ T+G  F P +    E    
Sbjct: 155 LSIAFHG-GEPLLRWDQIKRTVSYARERAAAVGHLVSFSIQTNGLFFTPAVVDYLERESF 213

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
            + ISL     +  ++ V  +   PL+ +    R YP  +  R
Sbjct: 214 SVGISLDGSDEEANSLRVVRHGPTPLQAVRQLLREYPAFARDR 256


>gi|255994316|ref|ZP_05427451.1| arylsulfatase regulator [Eubacterium saphenum ATCC 49989]
 gi|255993029|gb|EEU03118.1| arylsulfatase regulator [Eubacterium saphenum ATCC 49989]
          Length = 520

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 17/117 (14%)

Query: 110 EKSRGTL---CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
           +KS+ TL   C+    GC++ C +C+ G  +                +++L+ D      
Sbjct: 157 KKSQSTLKAICLHVAHGCNMRCGYCFAGDGEYNG-------------SKALMDDATAKAA 203

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
           I+ ++  S  R+   +   G GEPL NFD +K ++  A      +    R TL+T+G
Sbjct: 204 IDFLIRESKNRRNLEVDFFG-GEPLLNFDVIKNTVKYARSIEKSANKNFRFTLTTNG 259


>gi|326791643|ref|YP_004309464.1| radical SAM protein [Clostridium lentocellum DSM 5427]
 gi|326542407|gb|ADZ84266.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 19/132 (14%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+ G  +   +             RSL+    G + ++ ++  S
Sbjct: 94  ALCLHVAHDCNLKCKYCFAGEGEYHGH-------------RSLMSIEVGKKAVDFIIENS 140

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
             RK   I   G GEPL N++ VK++++ A +    +    R T++T+G + N     +E
Sbjct: 141 KHRKNIEIDFFG-GEPLMNWEMVKETVAYAREREKETGKNFRFTMTTNGVLLN-----DE 194

Query: 235 IGVMLAISLHAV 246
           I   L  ++H V
Sbjct: 195 IIDYLNENMHNV 206


>gi|150019940|ref|YP_001305294.1| radical SAM domain-containing protein [Thermosipho melanesiensis
           BI429]
 gi|149792461|gb|ABR29909.1| Radical SAM domain protein [Thermosipho melanesiensis BI429]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 106/268 (39%), Gaps = 28/268 (10%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           IP + +  L VS+  GC + C  C  G     + L ++EI+ Q+L              +
Sbjct: 36  IPREKKWVLIVSTLNGCPVGCLMCDAGGFYKGK-LQSDEIMEQILFL------------V 82

Query: 168 EGMVI-PSVGRKISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRIT-LSTSG 223
           E   I   V  +   I    MGEP  N    +V + L    D+ GL  S   +  + T  
Sbjct: 83  ESRFINKRVPVEKFKIQFARMGEPALNEAVLDVLERLPKEIDAPGLMPSVSTVAPIGTDD 142

Query: 224 FVPNIARVGEEIGV---MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
           F   +  + +++ +    L  S+HA   D RN ++PI +K+  E +      +   S  R
Sbjct: 143 FFERLLEIKDKMYLGRFQLQFSIHATDKDQRNRIIPI-KKWSFEDIAKYGEKFVK-SGDR 200

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP-WPGCEYLCSDQKDIVTFSE 339
           ++T  + + K    +  D   +IK        I + P NP +   +       D+ TF  
Sbjct: 201 KVTLNFALAK---QNIADPDVIIKYFDKEKFLIKITPINPTYSAMKNNLESDIDLKTFIP 257

Query: 340 CIKRSGYSSPIRTPRGLDILAACGQLKS 367
                 Y        G D++ + G+L+ 
Sbjct: 258 V--NHQYFVEKLMEAGYDVIISIGELEE 283


>gi|240147168|ref|ZP_04745769.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
 gi|257200635|gb|EEU98919.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
          Length = 67

 Score = 40.8 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +NLIP NP     Y+  D + I+ F   ++++  +  IR   G DI  ACGQL+
Sbjct: 5   VNLIPVNPIKERSYVQPDHEAILNFKNRLEKNAINVTIRREMGRDIDGACGQLR 58


>gi|257438968|ref|ZP_05614723.1| radical SAM domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257198553|gb|EEU96837.1| radical SAM domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 487

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 18/130 (13%)

Query: 100 PVEIETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
           P   E +    K+R T    LC+     C+L CS+C+    +       E  L+   + +
Sbjct: 85  PDTYEDLAFDFKNRNTVVKALCLHVAHTCNLNCSYCFASQGRY----QGERALMSFEVGK 140

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
             + DF        ++  S  R+   +   G GEPL NFD VKK ++   +   +     
Sbjct: 141 RAM-DF--------LIENSGSRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQEKIHNKNF 190

Query: 216 RITLSTSGFV 225
           R T++T+G +
Sbjct: 191 RFTMTTNGML 200


>gi|163814895|ref|ZP_02206283.1| hypothetical protein COPEUT_01046 [Coprococcus eutactus ATCC 27759]
 gi|158449834|gb|EDP26829.1| hypothetical protein COPEUT_01046 [Coprococcus eutactus ATCC 27759]
          Length = 461

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 16/114 (14%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+ G  +       +  L+ + +A+  L DF        +V  S
Sbjct: 93  ALCLHIAHDCNLACRYCFAGEGEY----KGDRALMSLEVAKKSL-DF--------LVANS 139

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITLSTSGFVPN 227
             R+   +   G GEPL N+D VKK++     S+   + K+ R TL+T+G + N
Sbjct: 140 GFRRNLEVDFFG-GEPLMNWDVVKKTVEYGR-SLEEKYDKKFRFTLTTNGVLLN 191


>gi|218780005|ref|YP_002431323.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218761389|gb|ACL03855.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 468

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 78/201 (38%), Gaps = 30/201 (14%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC  +C FCY   +K  R    E+++ ++   R       G  D+E            + 
Sbjct: 204 GCPFSCGFCYN-FRKHYRARKPEDVVQELAAIRDR-----GIRDVE---------ICDDT 248

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML-AI 241
             +     L  FD + K      + + +SF   RI      F   +A+ G++ GV L A 
Sbjct: 249 FTVNEDRALAIFDLIVK------ERLDISF---RIKSRVDVFTEKLAKAGKKAGVYLVAF 299

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
            + + S   + IL  +N+K  L    +ACR       A   ++         D+  D + 
Sbjct: 300 GMESGS---QKILDAMNKKITLAQSAEACRLTKKYGIAAHSSWVIGYPGETPDTVEDTVR 356

Query: 302 LIKILKGIPAKINLIPFNPWP 322
              ILK  PA  NL    P+P
Sbjct: 357 F--ILKNKPATANLAVLRPYP 375


>gi|303242022|ref|ZP_07328514.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302590440|gb|EFL60196.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 455

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 86/196 (43%), Gaps = 45/196 (22%)

Query: 115 TLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            LC+     C+L C +C+   G+ K+ ++L   E+  + +       DF        +V 
Sbjct: 95  ALCLHVAHDCNLMCEYCFASKGSYKVAKSLMPAEVAFKAV-------DF--------VVN 139

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
            S  RK   I   G GEPL NFD +K+++  +      S      T++T+G + +  ++ 
Sbjct: 140 NSGTRKNVEIDFFG-GEPLLNFDVIKQTVEYSKKVQERSGKNIYFTITTNGTLLDDEKI- 197

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
                        ++ ++ N+++ I+ +  +    DA R+  G     + T++ ++    
Sbjct: 198 -----------KYINENMNNVVISIDGRKEVH---DAIRYDAG----HKGTYDKIL---- 235

Query: 293 NDSPRDALNLIKILKG 308
               ++AL L++  KG
Sbjct: 236 ----KNALKLVEGRKG 247


>gi|220927987|ref|YP_002504896.1| radical SAM protein [Clostridium cellulolyticum H10]
 gi|219998315|gb|ACL74916.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
          Length = 447

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 25/135 (18%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+  T     +             R+++    G + I+ ++  S
Sbjct: 93  ALCLHICHDCNLRCKYCFASTGSFGGH-------------RTMMDLETGKKAIDFLIEKS 139

Query: 175 VGRKISNIVMMGMGEPLCNFDNVK---KSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
            GR+   +   G GEPL NFD VK   K   I     G +F   R T++T+  + N    
Sbjct: 140 AGRRNLEVDFFG-GEPLMNFDVVKGIVKYARIREKEAGKNF---RFTITTNAVLLN---- 191

Query: 232 GEEIGVMLAISLHAV 246
            EEI   +  ++H V
Sbjct: 192 -EEIKDFINANMHNV 205


>gi|160879028|ref|YP_001557996.1| radical SAM domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160427694|gb|ABX41257.1| Radical SAM domain protein [Clostridium phytofermentans ISDg]
          Length = 489

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 66/166 (39%), Gaps = 27/166 (16%)

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q  S IY E+   K+  DG   +        IG   + ETV         LC+     
Sbjct: 91  LKQEISNIYDEVT--KMKEDGNL-FTEDIYENYIGSFKKRETVV------KALCLHIAHD 141

Query: 124 CSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           C+L C +C+   G     R L + E+  Q L       DF        ++  S  RK   
Sbjct: 142 CNLACRYCFAEEGEYHGRRALMSYEVGKQAL-------DF--------LIANSGSRKNLE 186

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
           +   G GEPL NF  VK  ++       +   K R TL+T+G + N
Sbjct: 187 VDFFG-GEPLMNFQVVKDLVAYGRSQEEIHNKKFRFTLTTNGVLLN 231


>gi|304317007|ref|YP_003852152.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778509|gb|ADL69068.1| Radical SAM domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 454

 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 18/111 (16%)

Query: 115 TLCVSSQVGCSLTCSFCY--TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            +C++    C+L CS+C+  TG  K  R L + E+               G + I+ ++ 
Sbjct: 95  AICLNVAHDCNLRCSYCFASTGDFKGGRKLMSYEV---------------GKKAIDFLIK 139

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
            S  RKI  +   G GEPL NF+ VKK +              + T++T+G
Sbjct: 140 NSGNRKIVEVDFFG-GEPLLNFEVVKKIVEYGRQEAKKHGKTIKYTITTNG 189


>gi|295094228|emb|CBK83319.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Coprococcus sp.
           ART55/1]
          Length = 454

 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 16/114 (14%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+ G  +       +  L+ + +A+  L DF        +V  S
Sbjct: 93  ALCLHIAHDCNLACRYCFAGEGEY----KGDRALMSLEVAKKSL-DF--------LVANS 139

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITLSTSGFVPN 227
             R+   +   G GEPL N+D VKK++     S+   + K+ R TL+T+G + N
Sbjct: 140 GLRRNLEVDFFG-GEPLMNWDVVKKTVEYGR-SLEEKYDKKFRFTLTTNGVLLN 191


>gi|297847344|ref|XP_002891553.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337395|gb|EFH67812.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 97

 Score = 39.7 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 35/64 (54%)

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
           +NP  G E     +K ++ F+  ++    ++ +R  RGLD  AACGQL++  ++ P +  
Sbjct: 11  YNPIEGSEQKRPYKKAVLAFAAALESRKITASVRQTRGLDASAACGQLRNKFQKSPLLAE 70

Query: 378 QEMQ 381
            + Q
Sbjct: 71  TDGQ 74


>gi|256112669|ref|ZP_05453590.1| endonuclease III [Brucella melitensis bv. 3 str. Ether]
 gi|265994111|ref|ZP_06106668.1| endonuclease III [Brucella melitensis bv. 3 str. Ether]
 gi|262765092|gb|EEZ11013.1| endonuclease III [Brucella melitensis bv. 3 str. Ether]
          Length = 248

 Score = 39.7 bits (91), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190
           Y  T  L RN     ILL   L R   G+ PG  D E + +P VGRK +N+V+ M  G+P
Sbjct: 102 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 160

Query: 191 LCNFDN 196
               D 
Sbjct: 161 TMAVDT 166


>gi|256368630|ref|YP_003106136.1| endonuclease III [Brucella microti CCM 4915]
 gi|255998788|gb|ACU47187.1| endonuclease III [Brucella microti CCM 4915]
          Length = 248

 Score = 39.7 bits (91), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190
           Y  T  L RN     ILL   L R   G+ PG  D E + +P VGRK +N+V+ M  G+P
Sbjct: 102 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 160

Query: 191 LCNFDN 196
               D 
Sbjct: 161 TMAVDT 166


>gi|294851563|ref|ZP_06792236.1| endonuclease III [Brucella sp. NVSL 07-0026]
 gi|294820152|gb|EFG37151.1| endonuclease III [Brucella sp. NVSL 07-0026]
          Length = 248

 Score = 39.7 bits (91), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190
           Y  T  L RN     ILL   L R   G+ PG  D E + +P VGRK +N+V+ M  G+P
Sbjct: 102 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 160

Query: 191 LCNFDN 196
               D 
Sbjct: 161 TMAVDT 166


>gi|210616298|ref|ZP_03291026.1| hypothetical protein CLONEX_03247 [Clostridium nexile DSM 1787]
 gi|210149853|gb|EEA80862.1| hypothetical protein CLONEX_03247 [Clostridium nexile DSM 1787]
          Length = 467

 Score = 39.7 bits (91), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 23/133 (17%)

Query: 102 EIETVYIPE-KSRGT----LCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLA 154
           +I   YI E KSR T    LC+     C+L C +C+   G     R L + E+  + L  
Sbjct: 89  DIYEAYIGEVKSRKTVVKALCIHIAHDCNLACQYCFAEEGEYHGRRALMSYEVGKKAL-- 146

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
                DF        ++  S  RK   +   G GEPL N+  VK  ++   +   L    
Sbjct: 147 -----DF--------LIANSGNRKNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKLHDKH 192

Query: 215 RRITLSTSGFVPN 227
            R TL+T+G + N
Sbjct: 193 FRFTLTTNGVLLN 205


>gi|17988065|ref|NP_540699.1| endonuclease III [Brucella melitensis bv. 1 str. 16M]
 gi|225851699|ref|YP_002731932.1| endonuclease III [Brucella melitensis ATCC 23457]
 gi|254694957|ref|ZP_05156785.1| endonuclease III [Brucella abortus bv. 3 str. Tulya]
 gi|254707144|ref|ZP_05168972.1| endonuclease III [Brucella pinnipedialis M163/99/10]
 gi|254709313|ref|ZP_05171124.1| endonuclease III [Brucella pinnipedialis B2/94]
 gi|254713265|ref|ZP_05175076.1| endonuclease III [Brucella ceti M644/93/1]
 gi|254716382|ref|ZP_05178193.1| endonuclease III [Brucella ceti M13/05/1]
 gi|254718380|ref|ZP_05180191.1| endonuclease III [Brucella sp. 83/13]
 gi|256030836|ref|ZP_05444450.1| endonuclease III [Brucella pinnipedialis M292/94/1]
 gi|256045956|ref|ZP_05448828.1| endonuclease III [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060306|ref|ZP_05450479.1| endonuclease III [Brucella neotomae 5K33]
 gi|256158865|ref|ZP_05456719.1| endonuclease III [Brucella ceti M490/95/1]
 gi|256254242|ref|ZP_05459778.1| endonuclease III [Brucella ceti B1/94]
 gi|256264790|ref|ZP_05467322.1| endonuclease III [Brucella melitensis bv. 2 str. 63/9]
 gi|260169740|ref|ZP_05756551.1| endonuclease III [Brucella sp. F5/99]
 gi|260563238|ref|ZP_05833724.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|261215298|ref|ZP_05929579.1| endonuclease III [Brucella abortus bv. 3 str. Tulya]
 gi|261218166|ref|ZP_05932447.1| endonuclease III [Brucella ceti M13/05/1]
 gi|261221393|ref|ZP_05935674.1| endonuclease III [Brucella ceti B1/94]
 gi|261314621|ref|ZP_05953818.1| endonuclease III [Brucella pinnipedialis M163/99/10]
 gi|261316823|ref|ZP_05956020.1| endonuclease III [Brucella pinnipedialis B2/94]
 gi|261320986|ref|ZP_05960183.1| endonuclease III [Brucella ceti M644/93/1]
 gi|261324280|ref|ZP_05963477.1| endonuclease III [Brucella neotomae 5K33]
 gi|261759280|ref|ZP_06002989.1| endonuclease III [Brucella sp. F5/99]
 gi|265983343|ref|ZP_06096078.1| endonuclease III [Brucella sp. 83/13]
 gi|265987893|ref|ZP_06100450.1| endonuclease III [Brucella pinnipedialis M292/94/1]
 gi|265992368|ref|ZP_06104925.1| endonuclease III [Brucella melitensis bv. 1 str. Rev.1]
 gi|265997354|ref|ZP_06109911.1| endonuclease III [Brucella ceti M490/95/1]
 gi|306839612|ref|ZP_07472416.1| endonuclease III [Brucella sp. NF 2653]
 gi|306842549|ref|ZP_07475200.1| endonuclease III [Brucella sp. BO2]
 gi|17983814|gb|AAL52963.1| endonuclease iii [Brucella melitensis bv. 1 str. 16M]
 gi|225640064|gb|ACN99977.1| endonuclease III [Brucella melitensis ATCC 23457]
 gi|260153254|gb|EEW88346.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|260916905|gb|EEX83766.1| endonuclease III [Brucella abortus bv. 3 str. Tulya]
 gi|260919977|gb|EEX86630.1| endonuclease III [Brucella ceti B1/94]
 gi|260923255|gb|EEX89823.1| endonuclease III [Brucella ceti M13/05/1]
 gi|261293676|gb|EEX97172.1| endonuclease III [Brucella ceti M644/93/1]
 gi|261296046|gb|EEX99542.1| endonuclease III [Brucella pinnipedialis B2/94]
 gi|261300260|gb|EEY03757.1| endonuclease III [Brucella neotomae 5K33]
 gi|261303647|gb|EEY07144.1| endonuclease III [Brucella pinnipedialis M163/99/10]
 gi|261739264|gb|EEY27260.1| endonuclease III [Brucella sp. F5/99]
 gi|262551822|gb|EEZ07812.1| endonuclease III [Brucella ceti M490/95/1]
 gi|263003434|gb|EEZ15727.1| endonuclease III [Brucella melitensis bv. 1 str. Rev.1]
 gi|263095199|gb|EEZ18868.1| endonuclease III [Brucella melitensis bv. 2 str. 63/9]
 gi|264660090|gb|EEZ30351.1| endonuclease III [Brucella pinnipedialis M292/94/1]
 gi|264661935|gb|EEZ32196.1| endonuclease III [Brucella sp. 83/13]
 gi|306287405|gb|EFM58885.1| endonuclease III [Brucella sp. BO2]
 gi|306405310|gb|EFM61585.1| endonuclease III [Brucella sp. NF 2653]
 gi|326408187|gb|ADZ65252.1| endonuclease III [Brucella melitensis M28]
          Length = 248

 Score = 39.7 bits (91), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190
           Y  T  L RN     ILL   L R   G+ PG  D E + +P VGRK +N+V+ M  G+P
Sbjct: 102 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 160

Query: 191 LCNFDN 196
               D 
Sbjct: 161 TMAVDT 166


>gi|313114194|ref|ZP_07799746.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623603|gb|EFQ07006.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 487

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 18/130 (13%)

Query: 100 PVEIETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
           P   E +    K+R T    LC+     C+L CS+C+    +   +             R
Sbjct: 85  PDTYENMAFDFKNRNTVVKALCLHVAHTCNLNCSYCFASQGRYQGD-------------R 131

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
           +L+    G   ++ ++  S  R+   +   G GEPL NFD VKK ++   +   +     
Sbjct: 132 ALMSFEVGKRAMDFLIENSGTRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQEKIHNKNF 190

Query: 216 RITLSTSGFV 225
           R T++T+G +
Sbjct: 191 RFTMTTNGML 200


>gi|148559865|ref|YP_001258197.1| endonuclease III [Brucella ovis ATCC 25840]
 gi|225626703|ref|ZP_03784742.1| endonuclease III [Brucella ceti str. Cudo]
 gi|148371122|gb|ABQ61101.1| endonuclease III [Brucella ovis ATCC 25840]
 gi|225618360|gb|EEH15403.1| endonuclease III [Brucella ceti str. Cudo]
          Length = 260

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190
           Y  T  L RN     ILL   L R   G+ PG  D E + +P VGRK +N+V+ M  G+P
Sbjct: 114 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 172

Query: 191 LCNFDN 196
               D 
Sbjct: 173 TMAVDT 178


>gi|326537901|gb|ADZ86116.1| endonuclease III [Brucella melitensis M5-90]
          Length = 239

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190
           Y  T  L RN     ILL   L R   G+ PG  D E + +P VGRK +N+V+ M  G+P
Sbjct: 93  YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 151

Query: 191 LCNFDN 196
               D 
Sbjct: 152 TMAVDT 157


>gi|304440494|ref|ZP_07400381.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370972|gb|EFM24591.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 451

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)

Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159
           P  ++ VY P+     +C+     C+L C +C+        +   E +L+ +   ++ + 
Sbjct: 79  PRLMKAVYNPQNIIKAMCLHVSHDCNLRCKYCFASQG----DFHGERLLMDLETGKAAI- 133

Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
           DF        ++  S  R+   +   G GEPL NF+ VKK +    +         R TL
Sbjct: 134 DF--------LLENSGNRRNLEVDFFG-GEPLMNFNLVKKLVEYGDEREKEYGKNFRWTL 184

Query: 220 STSGFVPN 227
           +T+G + N
Sbjct: 185 TTNGMLLN 192


>gi|160893377|ref|ZP_02074163.1| hypothetical protein CLOL250_00927 [Clostridium sp. L2-50]
 gi|156864952|gb|EDO58383.1| hypothetical protein CLOL250_00927 [Clostridium sp. L2-50]
          Length = 454

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 14/113 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+ G  +       +  L+ + +A+  L DF         ++ +
Sbjct: 93  ALCINIAHDCNLACRYCFAGEGEY----KGDRGLMPLDIAKKSL-DF---------LVAN 138

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
            G +++  V    GEPL N+D VK+++            K R TL+T+G + N
Sbjct: 139 SGNRVNLEVDFFGGEPLMNWDVVKETVRYGRSLEEKHNKKFRFTLTTNGVLLN 191


>gi|323703288|ref|ZP_08114939.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531753|gb|EGB21641.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 450

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 18/115 (15%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLV--RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            LC+ +   C+L C +C+ G  +      L +EE+               G   I+ ++ 
Sbjct: 92  ALCLHAAHDCNLRCRYCFAGQGQFGGPSGLLSEEV---------------GRAAIDFLIE 136

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
            S  RK   I   G GEPL NF  +K+ +         +  K + TL+T+G + N
Sbjct: 137 QSGNRKHVEIDFFG-GEPLLNFKVIKELVPYGRQKAEQAGKKIKFTLTTNGVLLN 190


>gi|238923391|ref|YP_002936907.1| arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium rectale
           ATCC 33656]
 gi|238875066|gb|ACR74773.1| arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium rectale
           ATCC 33656]
          Length = 456

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 14/113 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+           AEE   +    R+L+    G + ++ ++  S
Sbjct: 94  ALCLHIAHDCNLACRYCF-----------AEE--GEYHGRRALMSYETGKQALDFLIANS 140

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
             R+   +   G GEPL N+D VK+ ++   +   L     R TL+T+G + N
Sbjct: 141 GSRRNLEVDFFG-GEPLMNWDVVKQLVAYGREQEKLHDKHFRFTLTTNGVLLN 192


>gi|317499049|ref|ZP_07957330.1| radical SAM superfamily protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893699|gb|EFV15900.1| radical SAM superfamily protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 458

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 18/115 (15%)

Query: 115 TLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            LC+     C+L C +C+   G  K  R L + E+  + L       DF        +V 
Sbjct: 93  ALCLHIAHDCNLACRYCFAEEGEYKGRRALMSAEVGKKAL-------DF--------LVE 137

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
            S  R+   +   G GEPL NFD VK+ ++           K R TL+T+G + N
Sbjct: 138 NSGNRRNLEVDFFG-GEPLMNFDVVKEIVAYGRSLEETHDKKFRFTLTTNGVLLN 191


>gi|23501077|ref|NP_697204.1| endonuclease III [Brucella suis 1330]
 gi|161618154|ref|YP_001592041.1| endonuclease III [Brucella canis ATCC 23365]
 gi|163842435|ref|YP_001626839.1| endonuclease III [Brucella suis ATCC 23445]
 gi|254705343|ref|ZP_05167171.1| endonuclease III [Brucella suis bv. 3 str. 686]
 gi|260567197|ref|ZP_05837667.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261756055|ref|ZP_05999764.1| endonuclease III [Brucella suis bv. 3 str. 686]
 gi|23346945|gb|AAN29119.1| endonuclease III [Brucella suis 1330]
 gi|161334965|gb|ABX61270.1| endonuclease III [Brucella canis ATCC 23365]
 gi|163673158|gb|ABY37269.1| endonuclease III [Brucella suis ATCC 23445]
 gi|260156715|gb|EEW91795.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261745808|gb|EEY33734.1| endonuclease III [Brucella suis bv. 3 str. 686]
          Length = 248

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190
           Y  T  L RN     ILL   L R   G+ PG  D E + +P VGRK +N+V+ M  G+P
Sbjct: 102 YIRTIGLWRNKAKNIILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 160

Query: 191 LCNFDN 196
               D 
Sbjct: 161 TMAVDT 166


>gi|291560706|emb|CBL39506.1| Arylsulfatase regulator (Fe-S oxidoreductase) [butyrate-producing
           bacterium SSC/2]
          Length = 458

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 18/115 (15%)

Query: 115 TLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            LC+     C+L C +C+   G  K  R L + E+  + L       DF        +V 
Sbjct: 93  ALCLHIAHDCNLACRYCFAEEGEYKGRRALMSAEVGKKAL-------DF--------LVE 137

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
            S  R+   +   G GEPL NFD VK+ ++           K R TL+T+G + N
Sbjct: 138 NSGNRRNLEVDFFG-GEPLMNFDVVKEIVAYGRSLEETHDKKFRFTLTTNGVLLN 191


>gi|254700972|ref|ZP_05162800.1| endonuclease III [Brucella suis bv. 5 str. 513]
 gi|261751492|ref|ZP_05995201.1| endonuclease III [Brucella suis bv. 5 str. 513]
 gi|261741245|gb|EEY29171.1| endonuclease III [Brucella suis bv. 5 str. 513]
          Length = 248

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190
           Y  T  L RN     ILL   L R   G+ PG  D E + +P VGRK +N+V+ M  G+P
Sbjct: 102 YIRTIGLWRNKAKNIILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 160

Query: 191 LCNFDN 196
               D 
Sbjct: 161 TMAVDT 166


>gi|167766768|ref|ZP_02438821.1| hypothetical protein CLOSS21_01276 [Clostridium sp. SS2/1]
 gi|167711522|gb|EDS22101.1| hypothetical protein CLOSS21_01276 [Clostridium sp. SS2/1]
          Length = 458

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 18/115 (15%)

Query: 115 TLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            LC+     C+L C +C+   G  K  R L + E+  + L       DF        +V 
Sbjct: 93  ALCLHIAHDCNLACRYCFAEEGEYKGRRALMSAEVGKKAL-------DF--------LVE 137

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
            S  R+   +   G GEPL NFD VK+ ++           K R TL+T+G + N
Sbjct: 138 NSGNRRNLEVDFFG-GEPLMNFDVVKEIVAYGRSLEETHDKKFRFTLTTNGVLLN 191


>gi|328544106|ref|YP_004304215.1| Quinohemoprotein amine dehydrogenase SAM-radical
           dependentactivating subunit [polymorphum gilvum
           SL003B-26A1]
 gi|326413849|gb|ADZ70912.1| Quinohemoprotein amine dehydrogenase, putative SAM-radical
           dependentactivating subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 478

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 19/117 (16%)

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
           P R    PV IET  +      T+ ++   GC+L+C++CY   + L        + L+  
Sbjct: 86  PPRAERPPVRIETFPLT-----TMVLNVNTGCNLSCTYCY--KEDLDTPSKGRRMELET- 137

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
             RS          IE ++  S  R   NIV  G GEPL N   ++  ++ A D  G
Sbjct: 138 AKRS----------IELLLAESPDRDSYNIVFFG-GEPLSNLALIRDVVAYAEDRFG 183


>gi|46205883|ref|ZP_00047970.2| hypothetical protein Magn03000763 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 56

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/21 (76%), Positives = 17/21 (80%)

Query: 126 LTCSFCYTGTQKLVRNLTAEE 146
            TC FC+TGTQ LVRNLTA E
Sbjct: 36  FTCRFCHTGTQLLVRNLTAAE 56


>gi|218283069|ref|ZP_03489164.1| hypothetical protein EUBIFOR_01750 [Eubacterium biforme DSM 3989]
 gi|218216138|gb|EEC89676.1| hypothetical protein EUBIFOR_01750 [Eubacterium biforme DSM 3989]
          Length = 464

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 14/111 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L CS+C+    K   +             R+L+    G   ++ +V  S
Sbjct: 98  ALCLHIAHTCNLNCSYCFASQGKYHGD-------------RALMSFETGKRALDFLVENS 144

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
             R+   +   G GEPL NFD VK+ ++ A      +    R TL+T+G +
Sbjct: 145 GTRRNLEVDFFG-GEPLMNFDVVKQLVAYARSIEKEAGKNFRFTLTTNGML 194


>gi|239831014|ref|ZP_04679343.1| endonuclease III [Ochrobactrum intermedium LMG 3301]
 gi|239823281|gb|EEQ94849.1| endonuclease III [Ochrobactrum intermedium LMG 3301]
          Length = 248

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190
           Y  T  L RN     ILL   L R   G  PG  D E + +P VGRK +N+V+ M  G+P
Sbjct: 100 YIRTIGLWRNKAKNVILLSEALIRDHGGKVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 158

Query: 191 LCNFDN 196
               D 
Sbjct: 159 TMAVDT 164


>gi|160945445|ref|ZP_02092671.1| hypothetical protein FAEPRAM212_02968 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443176|gb|EDP20181.1| hypothetical protein FAEPRAM212_02968 [Faecalibacterium prausnitzii
           M21/2]
          Length = 487

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 18/117 (15%)

Query: 111 KSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
           K+R T    LC+     C+L+CS+C+    +   +             R+L+    G   
Sbjct: 96  KNRNTVVKALCLHVAHSCNLSCSYCFASQGRYHGD-------------RALMSFEVGKRA 142

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
           ++ ++  S  R+   +   G GEPL NFD VKK ++   +   +     R T++T+G
Sbjct: 143 MDFLIENSGTRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQEKIHNKNFRFTMTTNG 198


>gi|303238883|ref|ZP_07325414.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302593516|gb|EFL63233.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 448

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 14/113 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+  T                   RS++    G + I+ ++  S
Sbjct: 93  ALCLHISHDCNLRCKYCFASTGDFGGQ-------------RSMMSSEVGKKAIDFIIKES 139

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
             RK   + + G GEPL NF+ VK+ ++ A      +    R TL+T+  + N
Sbjct: 140 GSRKNLEVDLFG-GEPLMNFEVVKEIVAYAKSKEKEAGKNFRFTLTTNAILLN 191


>gi|28211687|ref|NP_782631.1| septum site-determining protein minD [Clostridium tetani E88]
 gi|28204129|gb|AAO36568.1| septum site-determining protein minD [Clostridium tetani E88]
          Length = 265

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 226 PNIARVGEEIGVM-----LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-A 279
           P + RVG+ + V      LAI L  +  D RNI V  NR  P+ +L D  +      N A
Sbjct: 176 PEMVRVGDMLAVQDILDSLAIKLIGIVPDDRNITVSTNRGEPI-VLNDNSKSGQAFKNIA 234

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGI 309
           RRIT E V    I++  +   N +K   G+
Sbjct: 235 RRITGEEVPFISIDNDGKGFFNTLKKFFGV 264


>gi|90962847|ref|YP_536762.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
           UCC118]
 gi|90822041|gb|ABE00679.1| Pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
           UCC118]
          Length = 278

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 78/187 (41%), Gaps = 31/187 (16%)

Query: 114 GTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
           G   V+   GC + C FC+   T   ++   +T EE+L + L  RS  GD       +G 
Sbjct: 34  GIRFVAFMQGCHMRCKFCHNPDTWKTRVGSQMTTEEVLNKALPYRSFWGD-------KGG 86

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
           +  S G  +  I        +C     ++ +S   D+ G  F++R          P  ++
Sbjct: 87  ITLSGGEILLQIDFALELFKMCK----EEGISTCLDTCGQPFTRRE---------PWFSK 133

Query: 231 VGE--EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
             E  +   +L + +  +++D    L      +P + ++D C +   +   + +   +V+
Sbjct: 134 FNELMDYTDILLVDIKHINSDEHKRLT----GFPNDNILDMCEYLSSI--GKPVWIRHVL 187

Query: 289 LKGINDS 295
           + GI D+
Sbjct: 188 IPGITDN 194


>gi|295100532|emb|CBK98077.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Faecalibacterium
           prausnitzii L2-6]
          Length = 483

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 14/111 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L CS+C+    +   +             R+L+    G   ++ ++  S
Sbjct: 100 ALCLHVAHTCNLNCSYCFASQGRYQGD-------------RALMSFEVGKRAMDFLIENS 146

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
             R+   +   G GEPL NFD VKK ++   +   +     R T++T+G +
Sbjct: 147 GTRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQEKIHNKNFRFTMTTNGML 196


>gi|326204482|ref|ZP_08194339.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325985275|gb|EGD46114.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 447

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 19/132 (14%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+  T     +             R+++    G + I+ ++  S
Sbjct: 93  ALCLHICHDCNLRCKYCFASTGSFGGH-------------RTMMDLETGRKAIDFLIEKS 139

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
            GR+   +   G GEPL NFD VK  +  A      S    R T++T+  + N     +E
Sbjct: 140 AGRRNLEVDFFG-GEPLMNFDVVKGIVEYARIREKESGKNFRFTITTNAVLLN-----DE 193

Query: 235 IGVMLAISLHAV 246
           I   +  ++H V
Sbjct: 194 IKDFINKNMHNV 205


>gi|301300126|ref|ZP_07206342.1| pyruvate formate-lyase 1-activating enzyme [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300215439|gb|ADJ79852.1| Pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
           CECT 5713]
 gi|300852300|gb|EFK79968.1| pyruvate formate-lyase 1-activating enzyme [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 278

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 78/187 (41%), Gaps = 31/187 (16%)

Query: 114 GTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
           G   V+   GC + C FC+   T   ++   +T EE+L + L  RS  GD       +G 
Sbjct: 34  GIRFVAFMQGCHMRCKFCHNPDTWKTRVGSQMTTEEVLNKALPYRSFWGD-------KGG 86

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
           +  S G  +  I        +C     ++ +S   D+ G  F++R          P  ++
Sbjct: 87  ITLSGGEILLQIDFALELFKMCK----EEGISTCLDTCGQPFTRRE---------PWFSK 133

Query: 231 VGE--EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
             E  +   +L + +  +++D    L      +P + ++D C +   +   + +   +V+
Sbjct: 134 FNELMDYTDILLVDIKHINSDEHKRLT----GFPNDNILDMCEYLSSI--GKPVWIRHVL 187

Query: 289 LKGINDS 295
           + GI D+
Sbjct: 188 IPGITDN 194


>gi|238917316|ref|YP_002930833.1| hypothetical protein EUBELI_01391 [Eubacterium eligens ATCC 27750]
 gi|238872676|gb|ACR72386.1| Hypothetical protein EUBELI_01391 [Eubacterium eligens ATCC 27750]
          Length = 453

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 34/188 (18%)

Query: 98  GGPVEIETVYIPE----KSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
            G +  E +Y P     K R T    LC+     C+L C +C+           AEE   
Sbjct: 69  AGQLFTEDIYEPYIDNFKDRPTVVKALCLHIAHDCNLACKYCF-----------AEE--G 115

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           +    R+L+    G + ++ +V  S  RK   +   G GEP  NF+ VK+ +        
Sbjct: 116 EYHGRRALMSYEVGKKALDFLVANSGSRKNLEVDFFG-GEPTMNFEVVKQLVEYGRSIEE 174

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
            +  K R TL+T+G + N     +EI       L   + ++ NI++ I+ +  +  L+  
Sbjct: 175 ANNKKFRFTLTTNGILLN-----DEI-------LDFANKEMSNIVLSIDGRKEINDLMRP 222

Query: 270 CRHYPGLS 277
            R+  G S
Sbjct: 223 TRNNHGSS 230


>gi|300116409|ref|NP_001177849.1| hypothetical protein LOC411983 [Apis mellifera]
 gi|298569767|gb|ADI87412.1| putative fatty acyl-CoA reductase [Apis mellifera]
          Length = 541

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 84/194 (43%), Gaps = 38/194 (19%)

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS--------LSI 203
           +L   LL + PG   I  +V P  G+ +   +     +PL  F+ +K+         ++I
Sbjct: 69  ILIEKLLRECPGISFIYMLVRPKKGKDMHQRIEELFDDPL--FNKLKEKHPKFRYQIVAI 126

Query: 204 ASD----SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259
           A D     +GLS + R++             +  E+ ++  ++     ++   + VPIN 
Sbjct: 127 AGDCVQPGLGLSSADRQM-------------ITREVSIVFHVAATVRFDEKMKLAVPINV 173

Query: 260 KYPLEMLIDACRHYPGLSNARRITFEY------VMLKGINDSPRDALNLIKILKGIPAKI 313
           + P EM ID C+    L +   ++  Y      ++ + I ++P DA  L+ I+  +  K+
Sbjct: 174 RSPKEM-IDLCKEISYLKSFVHVSTAYANCPHDLIEEKIYEAPMDANKLVTIIDYMDDKL 232

Query: 314 --NLIP--FNPWPG 323
             ++ P     WP 
Sbjct: 233 VEDITPKLLGAWPN 246


>gi|167629098|ref|YP_001679597.1| radical sam protein, putative [Heliobacterium modesticaldum Ice1]
 gi|167591838|gb|ABZ83586.1| radical sam protein, putative [Heliobacterium modesticaldum Ice1]
          Length = 470

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 14/90 (15%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+ GT     +             RSL+    G + ++ ++  S
Sbjct: 111 ALCLHVAHDCNLRCGYCFAGTGPFGGD-------------RSLMPVETGKQAVDFLLAHS 157

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
            GR+   I   G GEPL N D VK+ ++ A
Sbjct: 158 QGRRHVEIDFFG-GEPLLNVDVVKELVAYA 186


>gi|260886817|ref|ZP_05898080.1| putative radical SAM domain protein [Selenomonas sputigena ATCC
           35185]
 gi|330839376|ref|YP_004413956.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|260863416|gb|EEX77916.1| putative radical SAM domain protein [Selenomonas sputigena ATCC
           35185]
 gi|329747140|gb|AEC00497.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
          Length = 590

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTG-TQKLVRNLTAEEILLQV 151
           +P+K+R  LC+ +  GC   C+FCY G +   VR  + E +L ++
Sbjct: 180 LPQKNRRDLCIMTGRGCPFRCAFCYEGRSSGKVRFRSVENVLEEI 224


>gi|170754837|ref|YP_001782699.1| radical SAM domain-containing protein [Clostridium botulinum B1
           str. Okra]
 gi|169120049|gb|ACA43885.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra]
          Length = 455

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 21/127 (16%)

Query: 106 VYIPEKSRG---TLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGD 160
            Y  EKS      LC++    C+L C +C+   G  K  R L + E+             
Sbjct: 84  AYAHEKSENFIKALCLNIAHDCNLRCKYCFADEGEYKGKRELMSPEV------------- 130

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
             G + I+ ++  S  RK   + + G GEPL  F  +K+ +  A +         R T++
Sbjct: 131 --GKKAIDFVIEKSGPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEEKHNKTIRFTMT 187

Query: 221 TSGFVPN 227
           T+G + N
Sbjct: 188 TNGTLLN 194


>gi|207111233|ref|ZP_03245395.1| hypothetical protein HpylH_19398 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 54

 Score = 36.6 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           + +NDS   A  L+K+L GI +K+NLI FNP  G ++
Sbjct: 1   RDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKF 37


>gi|226323829|ref|ZP_03799347.1| hypothetical protein COPCOM_01604 [Coprococcus comes ATCC 27758]
 gi|225208013|gb|EEG90367.1| hypothetical protein COPCOM_01604 [Coprococcus comes ATCC 27758]
          Length = 85

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 4  LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
          ++K+ +     EEL+E +L IG        R+ QI+ WI+ + + DF+ M+++ + +R  
Sbjct: 1  MEKKDIASYSFEELQEEMLAIG----EKGFRSRQIYSWIHEKLVDDFEEMTNLPKTLRQK 56

Query: 64 LNQHFSI 70
          L   + I
Sbjct: 57 LESAYEI 63


>gi|310792856|gb|EFQ28317.1| pentatricopeptide repeat domain-containing protein [Glomerella
           graminicola M1.001]
          Length = 721

 Score = 36.6 bits (83), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 1   MNFLKK---ESLIGMMREELEEALLKIGI------PQRHVRMRTSQIWKWIYVRGIRDFQ 51
           ++FL K   + L G  R    EAL K  I      PQ+HVR+R + I+  I    I   +
Sbjct: 154 IHFLAKWQRQKLAGEKRTSHAEALCKFVITIINKTPQKHVRIRQNTIYNLIRTTSIEGIE 213

Query: 52  GMSDISQEVRHLLNQH 67
            +    +E RH L++H
Sbjct: 214 ALYHCLKEYRHNLHRH 229


>gi|167770639|ref|ZP_02442692.1| hypothetical protein ANACOL_01985 [Anaerotruncus colihominis DSM
           17241]
 gi|167667234|gb|EDS11364.1| hypothetical protein ANACOL_01985 [Anaerotruncus colihominis DSM
           17241]
          Length = 457

 Score = 36.6 bits (83), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 18/139 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C+     C+L C +C+  T + + +             R L+    G   I+ ++  S
Sbjct: 98  AMCLHIAHDCNLRCKYCFADTGEYMGH-------------RELMSPETGRAAIDYLIDHS 144

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-- 232
            GR    + + G GEPL NF+ V++ +  A           R T++T+G + +  ++   
Sbjct: 145 AGRHNLEVDLFG-GEPLMNFETVREVVRYARSLEKKHGKLFRFTITTNGILLDDDKIDFI 203

Query: 233 --EEIGVMLAISLHAVSND 249
             E   V+L+I      ND
Sbjct: 204 NQEMSNVVLSIDGRREVND 222


>gi|295105390|emb|CBL02934.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Faecalibacterium
           prausnitzii SL3/3]
          Length = 486

 Score = 36.6 bits (83), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 18/117 (15%)

Query: 111 KSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
           K+R T    LC+     C+L+CS+C+    +   +             R+L+    G   
Sbjct: 92  KNRNTVVKALCLHVAHSCNLSCSYCFASQGRYHGD-------------RALMSFEVGKRA 138

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
           ++ ++  S  R+   +   G GEPL NF+ VKK ++   +   +     R T++T+G
Sbjct: 139 MDFLIENSGTRRNLEVDFFG-GEPLMNFEMVKKLVAYCREQEKIHNKNFRFTMTTNG 194


>gi|300855530|ref|YP_003780514.1| FeMo cofactor biosynthesis protein NifB [Clostridium ljungdahlii
           DSM 13528]
 gi|300435645|gb|ADK15412.1| FeMo cofactor biosynthesis protein NifB [Clostridium ljungdahlii
           DSM 13528]
          Length = 423

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 18/127 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+++C+FC      +  N T   +  +VL        F         ++    R ++ + 
Sbjct: 38  CNVSCNFCNRKYDCV--NETRPGVTSEVLTPEGARDKFK--------IVRDKVRNLTVVG 87

Query: 184 MMGMGEPLCNFDNVKKSLS-IASDSMGLSFSKRRITLSTSGF-VPNIARVGEEIGVM-LA 240
           + G G+PL NFD  KKS+  I  +S  ++F      LST+G  +P  A    E+GV  L 
Sbjct: 88  IAGPGDPLANFDETKKSIELIKKESKDITF-----CLSTNGLMLPFYADKLIELGVTHLT 142

Query: 241 ISLHAVS 247
           ++++AV 
Sbjct: 143 VTINAVD 149


>gi|229828664|ref|ZP_04454733.1| hypothetical protein GCWU000342_00730 [Shuttleworthia satelles DSM
           14600]
 gi|229793258|gb|EEP29372.1| hypothetical protein GCWU000342_00730 [Shuttleworthia satelles DSM
           14600]
          Length = 476

 Score = 36.2 bits (82), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 13/113 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+                      R L+    G    + ++  S
Sbjct: 98  ALCLNVAHDCNLACKYCFADEGTYCGG------------PRELMSFETGKNAFDFLIANS 145

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
             R+   +   G GEPL N++ VKK ++       L   K R TL+T+G + N
Sbjct: 146 GNRRNLEVDFFG-GEPLMNWEVVKKLVAYGRQEEKLYDKKFRFTLTTNGVLLN 197


>gi|187778355|ref|ZP_02994828.1| hypothetical protein CLOSPO_01947 [Clostridium sporogenes ATCC
           15579]
 gi|187771980|gb|EDU35782.1| hypothetical protein CLOSPO_01947 [Clostridium sporogenes ATCC
           15579]
          Length = 446

 Score = 36.2 bits (82), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 21/127 (16%)

Query: 106 VYIPEKSRG---TLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGD 160
            Y  EKS      LC++    C+L C +C+   G  K  R L + +I             
Sbjct: 75  AYAHEKSENFIKALCLNIAHDCNLRCKYCFADEGEYKGKRELMSPQI------------- 121

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
             G + I+ ++  S  RK   + + G GEPL  F  +K+ +  A +         R T++
Sbjct: 122 --GKKAIDFVIEKSGPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEKKHNKTIRFTMT 178

Query: 221 TSGFVPN 227
           T+G + N
Sbjct: 179 TNGTLLN 185


Searching..................................................done


Results from round 2




>gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040797|gb|ACT57593.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 384

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 384/384 (100%), Positives = 384/384 (100%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV
Sbjct: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS
Sbjct: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS
Sbjct: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA
Sbjct: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL
Sbjct: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA
Sbjct: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360

Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
           ACGQLKSLSKRIPKVPRQEMQITG
Sbjct: 361 ACGQLKSLSKRIPKVPRQEMQITG 384


>gi|227823764|ref|YP_002827737.1| putative radical SAM enzyme, Cfr family [Sinorhizobium fredii
           NGR234]
 gi|259491994|sp|C3MAJ1|RLMN_RHISN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|227342766|gb|ACP26984.1| putative radical SAM enzyme, Cfr family [Sinorhizobium fredii
           NGR234]
          Length = 411

 Score =  525 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 256/377 (67%), Positives = 316/377 (83%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG++RE++ + L++ G+P+R V+MR SQ+W W+YVRG+ DF  MS++S+++R +L
Sbjct: 25  EKPSLIGLLREDMAKLLVEKGVPERQVKMRVSQLWHWLYVRGVSDFDQMSNVSKDMREML 84

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +HF++  PEIV+E++S DGTRKWLLRFP R  G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 85  KEHFTVARPEIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 144

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQKLVRNLTAEEIL Q+LLAR  LGDFP  +  +G ++P+ GRKI+NIVM
Sbjct: 145 TLTCSFCHTGTQKLVRNLTAEEILAQLLLARDRLGDFPERDTPQGAIVPAEGRKITNIVM 204

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNVK +L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISLH
Sbjct: 205 MGMGEPLYNFDNVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLH 264

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV+++LR++LVPIN+KYPL+ L++ACR YPGLSNARRITFEYVMLK +NDS +DA  L+K
Sbjct: 265 AVNDELRDMLVPINKKYPLKELMEACRAYPGLSNARRITFEYVMLKDVNDSLQDAKELVK 324

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I ++GY+SPIRTPRG DILAACGQ
Sbjct: 325 LLKGIPAKINLIPFNPWPGTNYQCSDWEQIEAFADFINQAGYASPIRTPRGRDILAACGQ 384

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS S+R+ KV R   +
Sbjct: 385 LKSESERMRKVDRLAFE 401


>gi|110635192|ref|YP_675400.1| radical SAM protein [Mesorhizobium sp. BNC1]
 gi|122965694|sp|Q11EE0|RLMN_MESSB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|110286176|gb|ABG64235.1| 23S rRNA m(2)A-2503 methyltransferase [Chelativorans sp. BNC1]
          Length = 408

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 255/379 (67%), Positives = 312/379 (82%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            ++K+ LIG+ REE+ +AL  IG+P+R V MR  Q+W W+YVRG+ DF  M +IS+E+R 
Sbjct: 21  TVEKKPLIGLSREEMAQALASIGVPERQVNMRVRQLWHWLYVRGVSDFSRMFNISKELRA 80

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L++HF+I  PEIV+E+IS DGTRKWLLRFP R  G PVE+ETVYIPE+ RGTLC+SSQV
Sbjct: 81  KLDEHFTIARPEIVEEQISQDGTRKWLLRFPPRGAGRPVEVETVYIPEEDRGTLCISSQV 140

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+LTCSFC+TGTQK+VRNLTA EIL Q+L+AR  LGDFP  +  +G ++P+ GRKI+NI
Sbjct: 141 GCTLTCSFCHTGTQKMVRNLTAGEILDQLLIARDRLGDFPDADTPDGAIVPAEGRKITNI 200

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL NF+NVK++L +ASD  GLS SKRRITLSTSG VP I R GEEIG+MLAIS
Sbjct: 201 VMMGMGEPLYNFENVKQALLVASDGDGLSLSKRRITLSTSGVVPEIYRTGEEIGIMLAIS 260

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHAV ++LRN LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLKG+NDS  DA  L
Sbjct: 261 LHAVRDELRNELVPINKKYPLKDLLDACRAYPGLSNARRITFEYVMLKGVNDSLDDAREL 320

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +++LKGIPAKINLIPFNPWPG  Y CSD + I  F+E + R+GY+SPIRTPRG DILAAC
Sbjct: 321 VRLLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFAELVNRAGYASPIRTPRGRDILAAC 380

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQLKS S+R+ K  R +++
Sbjct: 381 GQLKSASERMKKTERLKLE 399


>gi|315122584|ref|YP_004063073.1| radical SAM protein [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495986|gb|ADR52585.1| radical SAM protein [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 389

 Score =  524 bits (1351), Expect = e-147,   Method: Composition-based stats.
 Identities = 328/383 (85%), Positives = 359/383 (93%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN +KKESLIGM REE+EE+LLKIG+P   VRMRTSQIWKWIYVRG+RDF  MSDIS+E+
Sbjct: 1   MNIVKKESLIGMTREEIEESLLKIGVPPIQVRMRTSQIWKWIYVRGVRDFHFMSDISKEI 60

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R LL+QHF+I+YPEIVDEKISCDGTRKWLLRFPARCIG PV+IETVYIPEKSRGTLCVSS
Sbjct: 61  RCLLDQHFAIVYPEIVDEKISCDGTRKWLLRFPARCIGDPVDIETVYIPEKSRGTLCVSS 120

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSLTCSFCYTGTQ+LVRNLT EEILLQ+LL RSLLGDFPGCED+  MV+P VGRK+S
Sbjct: 121 QVGCSLTCSFCYTGTQQLVRNLTVEEILLQILLVRSLLGDFPGCEDMTEMVVPLVGRKVS 180

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIVMMGMGEPLCNFDNVKK+L IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA
Sbjct: 181 NIVMMGMGEPLCNFDNVKKALLIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHAV NDLRNILVPIN+KYPLEML+DACR+YPGLSN+RRITFEYVMLKGINDSPRDA+
Sbjct: 241 ISLHAVKNDLRNILVPINKKYPLEMLMDACRNYPGLSNSRRITFEYVMLKGINDSPRDAI 300

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LIK+LKGIPAKINLIPFNPWPGC+YLCSDQKDI  FSE +K+SGYSSPIRTPRGLDI A
Sbjct: 301 ELIKLLKGIPAKINLIPFNPWPGCDYLCSDQKDIEIFSEYVKKSGYSSPIRTPRGLDIFA 360

Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
           ACGQLKSLSKR+P++  ++ QIT
Sbjct: 361 ACGQLKSLSKRVPRISSKQAQIT 383


>gi|118592064|ref|ZP_01549458.1| hypothetical protein SIAM614_25347 [Stappia aggregata IAM 12614]
 gi|118435360|gb|EAV42007.1| hypothetical protein SIAM614_25347 [Stappia aggregata IAM 12614]
          Length = 407

 Score =  524 bits (1350), Expect = e-147,   Method: Composition-based stats.
 Identities = 252/379 (66%), Positives = 311/379 (82%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +LIG+ REEL EAL  IG+PQ+  RMR SQ+W W+YVRG+ DF  M++I++++R  L
Sbjct: 29  DKPTLIGLSREELGEALGTIGVPQKQWRMRASQLWHWLYVRGVSDFAQMTNIAKDLRQKL 88

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++ F+I  PEIV E+IS DGTRKWL RFPAR  G PVE+ETVYIPE+ RGTLCVSSQVGC
Sbjct: 89  DEAFTIARPEIVSEQISVDGTRKWLFRFPARGAGRPVEVETVYIPEEGRGTLCVSSQVGC 148

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTC+FC+TGTQK+VRNLTAEEIL Q+L+AR  LGDFP  +  +G ++PS GR ++NIVM
Sbjct: 149 TLTCTFCHTGTQKMVRNLTAEEILSQILIARDRLGDFPHADTPQGAIVPSEGRLVTNIVM 208

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNVKK+L IASD  GLS SKRRITLSTSG VP I R GEEIG MLAISLH
Sbjct: 209 MGMGEPLYNFDNVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGCMLAISLH 268

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR++LVPIN+K+ ++ L+DACR YPGLSNA+RITFEYVMLKG+NDS +DAL L++
Sbjct: 269 AVRDELRDVLVPINKKWNIKELLDACRQYPGLSNAKRITFEYVMLKGVNDSNKDALELVR 328

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG +Y CSD + I  F++ + R+GY+SPIRTPRG DI AACGQ
Sbjct: 329 LLKGIPAKINLIPFNPWPGTDYECSDWERIEEFADIVNRAGYASPIRTPRGRDIFAACGQ 388

Query: 365 LKSLSKRIPKVPRQEMQIT 383
           LKS S+R+ K  R+ +  +
Sbjct: 389 LKSASERMRKKDREALAAS 407


>gi|114705378|ref|ZP_01438286.1| hypothetical protein FP2506_10576 [Fulvimarina pelagi HTCC2506]
 gi|114540163|gb|EAU43283.1| hypothetical protein FP2506_10576 [Fulvimarina pelagi HTCC2506]
          Length = 407

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 246/378 (65%), Positives = 305/378 (80%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ SLIGM REEL EAL  +G+P + VRMRT+Q+W W+YVRG+ DF  M+++S+++R+ L
Sbjct: 28  ERTSLIGMSREELGEALAAVGVPAKQVRMRTAQLWHWLYVRGVSDFAHMANVSKDLRNKL 87

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  ++I  PEIV E++S DGTRKW+ RFP R  G PVEIETVYIPE+ RGTLCVSSQVGC
Sbjct: 88  DAAYTIARPEIVTEQVSVDGTRKWVFRFPPRGAGRPVEIETVYIPEEGRGTLCVSSQVGC 147

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTC+FC+TGTQ+LVRNLTA EI+ QVLLAR  LGDFP  +   G ++PS GR +SN+VM
Sbjct: 148 TLTCTFCHTGTQRLVRNLTAGEIVSQVLLARERLGDFPDVDTPAGAIVPSEGRLVSNVVM 207

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  +L + SD  GLS SKRRITLSTSG VP I R GEE GVMLAISLH
Sbjct: 208 MGMGEPLYNFDNVATALGVISDGEGLSVSKRRITLSTSGVVPEIVRAGEETGVMLAISLH 267

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV+++LR+ LVPIN+KYPL  L++ACR+YPGLSNA+RITFEYVMLKG+NDS  DA NL++
Sbjct: 268 AVNDELRDELVPINKKYPLATLLEACRNYPGLSNAKRITFEYVMLKGVNDSMEDARNLVR 327

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD   I  F++ + ++GY+SPIRTPRG DI AACGQ
Sbjct: 328 MLKGIPAKINLIPFNPWPGSRYECSDWDQIERFADYVNQAGYASPIRTPRGRDIFAACGQ 387

Query: 365 LKSLSKRIPKVPRQEMQI 382
           LKS S+R+ K  R  +++
Sbjct: 388 LKSESERMRKKDRDRIEL 405


>gi|13473680|ref|NP_105248.1| hypothetical protein mlr4359 [Mesorhizobium loti MAFF303099]
 gi|81778968|sp|Q98E86|RLMN_RHILO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|14024431|dbj|BAB51034.1| mlr4359 [Mesorhizobium loti MAFF303099]
          Length = 410

 Score =  521 bits (1343), Expect = e-146,   Method: Composition-based stats.
 Identities = 259/384 (67%), Positives = 308/384 (80%), Gaps = 4/384 (1%)

Query: 5   KKESLIGMMREELEEALLKIG-IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K SLIG+ R EL EAL+  G +P+R  +MR  Q+W W+YVRG+ DF GM +IS+++R  
Sbjct: 23  EKPSLIGLTRAELGEALVASGIVPERQAKMRAQQLWHWMYVRGVSDFAGMFNISKDLRAE 82

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L++HF++  PEIV+E+IS DGTRKWL RFP R  G PVEIETVYIPE+ RGTLC+SSQVG
Sbjct: 83  LDKHFTVARPEIVEEQISSDGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVG 142

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTCSFC+TGTQKLVRNLT EEIL Q+L AR  LGDFP  +  +G ++P+ GRK+SNIV
Sbjct: 143 CTLTCSFCHTGTQKLVRNLTTEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSNIV 202

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISL
Sbjct: 203 MMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAISL 262

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++DLR++LVPIN+KYPL+ LI ACR YPGLSNA+RITFEYVMLK +NDS  DA  LI
Sbjct: 263 HATNDDLRDLLVPINKKYPLKELIAACRAYPGLSNAKRITFEYVMLKDVNDSIEDAKGLI 322

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACG
Sbjct: 323 KLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACG 382

Query: 364 QLKSLSKRIPKVPR---QEMQITG 384
           QLKS S+R+ KV R   + M I G
Sbjct: 383 QLKSESERMRKVDRLALEAMMIAG 406


>gi|260467307|ref|ZP_05813481.1| radical SAM enzyme, Cfr family [Mesorhizobium opportunistum
           WSM2075]
 gi|259028911|gb|EEW30213.1| radical SAM enzyme, Cfr family [Mesorhizobium opportunistum
           WSM2075]
          Length = 466

 Score =  521 bits (1342), Expect = e-146,   Method: Composition-based stats.
 Identities = 261/384 (67%), Positives = 309/384 (80%), Gaps = 4/384 (1%)

Query: 5   KKESLIGMMREELEEALLKIG-IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K SLIG+ R EL EAL+  G +P+R  +MR  Q+W W+YVRG+ DF GM +IS+++R  
Sbjct: 79  EKPSLIGLTRAELGEALVASGIVPERQAKMRAQQLWHWMYVRGVSDFAGMFNISKDLRAE 138

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L++HF++  PEIV+E+IS DGTRKWL RFP R  G PVEIETVYIPE+ RGTLC+SSQVG
Sbjct: 139 LDKHFTVARPEIVEEQISADGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVG 198

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTCSFC+TGTQKLVRNLTAEEIL Q+L AR  LGDFP  +  +G ++P+ GRK+SNIV
Sbjct: 199 CTLTCSFCHTGTQKLVRNLTAEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSNIV 258

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISL
Sbjct: 259 MMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAISL 318

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++DLR++LVPIN+KYPL+ LI ACR YPGLSNARRITFEYVMLK +NDS  DA  LI
Sbjct: 319 HATNDDLRDLLVPINKKYPLKDLIAACRAYPGLSNARRITFEYVMLKDVNDSIEDAKGLI 378

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACG
Sbjct: 379 KLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACG 438

Query: 364 QLKSLSKRIPKVPR---QEMQITG 384
           QLKS S+R+ KV R   + M I G
Sbjct: 439 QLKSESERMRKVDRLALEAMMIAG 462


>gi|150398262|ref|YP_001328729.1| radical SAM protein [Sinorhizobium medicae WSM419]
 gi|205829889|sp|A6UE14|RLMN_SINMW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|150029777|gb|ABR61894.1| radical SAM enzyme, Cfr family [Sinorhizobium medicae WSM419]
          Length = 413

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 256/377 (67%), Positives = 314/377 (83%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG++RE++ + L++ G+P+R V+MR SQ+W W+YVRG+ DF  MS++S+++R +L
Sbjct: 27  EKPSLIGLLREDMAKLLVEKGVPERQVKMRVSQVWHWLYVRGVSDFNEMSNVSKDMREML 86

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + HF+I  PEIV+E++S DGTRKWLLRFP R  G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 87  SAHFTIARPEIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 146

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQKLVRNLTAEEIL Q+LLAR  LGDFP  +  +G ++P+ GRKI+N+VM
Sbjct: 147 TLTCSFCHTGTQKLVRNLTAEEILAQLLLARDRLGDFPDRDTPQGAIVPAEGRKITNVVM 206

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NVK +L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISLH
Sbjct: 207 MGMGEPLYNFENVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLH 266

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +DLR++LVPIN+KYPL+ L++ACR YPGLSNARRITFEYVMLK +NDS  DA  L+K
Sbjct: 267 AVRDDLRDMLVPINKKYPLKELMEACRAYPGLSNARRITFEYVMLKDVNDSLEDAKELVK 326

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I ++GY+SPIRTPRG DILAACGQ
Sbjct: 327 LLKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINQAGYASPIRTPRGRDILAACGQ 386

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS S+R+ KV R   +
Sbjct: 387 LKSDSERMRKVDRLAFE 403


>gi|62289063|ref|YP_220856.1| hypothetical protein BruAb1_0077 [Brucella abortus bv. 1 str.
           9-941]
 gi|82699000|ref|YP_413574.1| hypothetical protein BAB1_0074 [Brucella melitensis biovar Abortus
           2308]
 gi|189023336|ref|YP_001934104.1| hypothetical protein BAbS19_I00700 [Brucella abortus S19]
 gi|237814550|ref|ZP_04593548.1| radical SAM enzyme, Cfr family [Brucella abortus str. 2308 A]
 gi|254690389|ref|ZP_05153643.1| hypothetical protein Babob68_09499 [Brucella abortus bv. 6 str.
           870]
 gi|254696506|ref|ZP_05158334.1| hypothetical protein Babob28_02005 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731419|ref|ZP_05189997.1| hypothetical protein Babob42_09524 [Brucella abortus bv. 4 str.
           292]
 gi|256258643|ref|ZP_05464179.1| hypothetical protein Babob9C_15111 [Brucella abortus bv. 9 str.
           C68]
 gi|260546356|ref|ZP_05822096.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
           NCTC 8038]
 gi|260755934|ref|ZP_05868282.1| radical SAM protein [Brucella abortus bv. 6 str. 870]
 gi|260759158|ref|ZP_05871506.1| radical SAM protein [Brucella abortus bv. 4 str. 292]
 gi|260760882|ref|ZP_05873225.1| radical SAM protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884958|ref|ZP_05896572.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
           bv. 9 str. C68]
 gi|297247480|ref|ZP_06931198.1| cfr family radical SAM enzyme [Brucella abortus bv. 5 str. B3196]
 gi|75497518|sp|Q57FT9|RLMN_BRUAB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123740915|sp|Q2YNV3|RLMN_BRUA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807157|sp|B2S7X6|RLMN_BRUA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|62195195|gb|AAX73495.1| conserved hypothetical protein TIGR00048 [Brucella abortus bv. 1
           str. 9-941]
 gi|82615101|emb|CAJ10030.1| Cytochrome c heme-binding site:Conserved hypothetical protein
           48:Radical SAM [Brucella melitensis biovar Abortus 2308]
 gi|189018908|gb|ACD71630.1| Conserved hypothetical protein 48 [Brucella abortus S19]
 gi|237789387|gb|EEP63597.1| radical SAM enzyme, Cfr family [Brucella abortus str. 2308 A]
 gi|260096463|gb|EEW80339.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
           NCTC 8038]
 gi|260669476|gb|EEX56416.1| radical SAM protein [Brucella abortus bv. 4 str. 292]
 gi|260671314|gb|EEX58135.1| radical SAM protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676042|gb|EEX62863.1| radical SAM protein [Brucella abortus bv. 6 str. 870]
 gi|260874486|gb|EEX81555.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
           bv. 9 str. C68]
 gi|297174649|gb|EFH33996.1| cfr family radical SAM enzyme [Brucella abortus bv. 5 str. B3196]
          Length = 411

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 256/382 (67%), Positives = 306/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  AL+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SK RITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKCRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPL  LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|153007435|ref|YP_001368650.1| radical SAM protein [Ochrobactrum anthropi ATCC 49188]
 gi|205829793|sp|A6WV17|RLMN_OCHA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|151559323|gb|ABS12821.1| radical SAM enzyme, Cfr family [Ochrobactrum anthropi ATCC 49188]
          Length = 411

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 260/382 (68%), Positives = 310/382 (81%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+ EAL+K G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAEALIKAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLCVSSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCVSSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLEDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CS+ + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSEWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERMRKSERLALEAMMIAG 408


>gi|239830929|ref|ZP_04679258.1| radical SAM enzyme, Cfr family [Ochrobactrum intermedium LMG 3301]
 gi|239823196|gb|EEQ94764.1| radical SAM enzyme, Cfr family [Ochrobactrum intermedium LMG 3301]
          Length = 411

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 259/382 (67%), Positives = 310/382 (81%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+ +AL+K+G+P+R  +MR SQ+W W+YVRG+ DF  M +IS+++R LL 
Sbjct: 27  KPSLIGMSREEMAQALIKVGVPERQTKMRISQLWHWLYVRGVSDFADMRNISKDLRALLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLEDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERMRKSERLALEAMMIAG 408


>gi|325294043|ref|YP_004279907.1| Ribosomal RNA large subunit methyltransferase N [Agrobacterium sp.
           H13-3]
 gi|325061896|gb|ADY65587.1| Ribosomal RNA large subunit methyltransferase N [Agrobacterium sp.
           H13-3]
          Length = 412

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 252/376 (67%), Positives = 306/376 (81%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+ EAL +IG+PQ+ V+MR SQ+W W+YVRG+ DF  M+++++E+R  L 
Sbjct: 26  KPSLIGMTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNMTNVAKELREKLK 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F+I  PEIV+E+IS DGTRKWL+RFP R  G PVEIETVYIPE+ RGTLC+SSQVGCS
Sbjct: 86  AAFTIARPEIVEEQISNDGTRKWLMRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGCS 145

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP      G  +PS GRK+SNIVMM
Sbjct: 146 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPSEGRKVSNIVMM 205

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF++VK +L IA+D  GLS SKRR+TLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 206 GMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGDEIGVMLAISLHA 265

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V +DLR++LVPIN+KYPL+ LI+ACR+YPG+SNARRITFEYVMLK +NDS  DA  L+++
Sbjct: 266 VRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVNDSLEDAKMLVQL 325

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+PAKINLIPFNPWPG  Y CS+   I  F++ I ++GY+SPIRTPRG DILAACGQL
Sbjct: 326 LRGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILAACGQL 385

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS S+R+ K  R   +
Sbjct: 386 KSESERMRKTERLAFE 401


>gi|15966967|ref|NP_387320.1| hypothetical protein SMc03831 [Sinorhizobium meliloti 1021]
 gi|307301740|ref|ZP_07581499.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti BL225C]
 gi|307316235|ref|ZP_07595679.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti AK83]
 gi|81633717|sp|Q92L68|RLMN_RHIME RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|15076240|emb|CAC47793.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306898075|gb|EFN28817.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti AK83]
 gi|306903438|gb|EFN34027.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti BL225C]
          Length = 411

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 255/377 (67%), Positives = 313/377 (83%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG++R+++ + L + G+P+R V+MR SQ+W W+YVRG+ DF  MS++S+++R +L
Sbjct: 25  EKPSLIGLLRDDIAKLLAEKGVPERQVKMRVSQLWHWLYVRGVSDFDEMSNVSKDMREML 84

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +HF+I  P+IV+E++S DGTRKWLLRFP R  G PVEIETVYIPE+ RGTLC+SSQVGC
Sbjct: 85  KEHFTIARPDIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 144

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQKLVRNLTAEEIL Q+LLAR  LGDFP  +  +G ++P+ GRKI+NIVM
Sbjct: 145 TLTCSFCHTGTQKLVRNLTAEEILSQLLLARDRLGDFPERDTPQGAIVPAEGRKITNIVM 204

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NVK +L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISLH
Sbjct: 205 MGMGEPLYNFENVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLH 264

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +DLR++LVPIN+KYPL+ L++ACR YPGLSNARRITFEYVMLK +NDS  DA  L+K
Sbjct: 265 AVRDDLRDMLVPINKKYPLKQLMEACRAYPGLSNARRITFEYVMLKDVNDSLEDAKELVK 324

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I ++GY+SPIRTPRG DILAACGQ
Sbjct: 325 LLKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINQAGYASPIRTPRGRDILAACGQ 384

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS S+R+ KV R   +
Sbjct: 385 LKSESERMRKVDRLAFE 401


>gi|256112582|ref|ZP_05453503.1| radical SAM protein [Brucella melitensis bv. 3 str. Ether]
 gi|265994024|ref|ZP_06106581.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 3 str. Ether]
 gi|262765005|gb|EEZ10926.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 3 str. Ether]
          Length = 411

 Score =  518 bits (1334), Expect = e-145,   Method: Composition-based stats.
 Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  AL+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPL  LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|205829733|sp|Q7CWI1|RLMN_AGRT5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 409

 Score =  518 bits (1334), Expect = e-145,   Method: Composition-based stats.
 Identities = 252/376 (67%), Positives = 306/376 (81%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ REE+ EAL +IG+PQ+ V+MR SQ+W W+YVRG+ DF  M+++++E+R  L 
Sbjct: 23  KPSLIGLTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNMTNVAKELREKLK 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F+I  PEIV+E+IS DGTRKWL+RFP R  G PVEIETVYIPE+ RGTLC+SSQVGCS
Sbjct: 83  AAFTIARPEIVEEQISNDGTRKWLMRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGCS 142

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP      G  +PS GRK+SNIVMM
Sbjct: 143 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPSEGRKVSNIVMM 202

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF++VK +L IA+D  GLS SKRR+TLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 203 GMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGDEIGVMLAISLHA 262

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V +DLR++LVPIN+KYPL+ LI+ACR+YPG+SNARRITFEYVMLK +NDS  DA  L+++
Sbjct: 263 VRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVNDSLEDAKMLVQL 322

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+PAKINLIPFNPWPG  Y CS+   I  F++ I ++GY+SPIRTPRG DILAACGQL
Sbjct: 323 LKGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILAACGQL 382

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS S+R+ K  R   +
Sbjct: 383 KSESERMRKTERLAFE 398


>gi|225851618|ref|YP_002731851.1| radical SAM protein [Brucella melitensis ATCC 23457]
 gi|256264871|ref|ZP_05467403.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 2 str. 63/9]
 gi|254807158|sp|C0RGD9|RLMN_BRUMB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|225639983|gb|ACN99896.1| radical SAM enzyme, Cfr family protein [Brucella melitensis ATCC
           23457]
 gi|263095326|gb|EEZ18953.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 2 str. 63/9]
 gi|326408090|gb|ADZ65155.1| radical SAM protein [Brucella melitensis M28]
 gi|326537806|gb|ADZ86021.1| radical SAM enzyme, Cfr family protein [Brucella melitensis M5-90]
          Length = 411

 Score =  518 bits (1334), Expect = e-145,   Method: Composition-based stats.
 Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  AL+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRSAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPL  LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|17988150|ref|NP_540784.1| florfenicol resistance protein [Brucella melitensis bv. 1 str. 16M]
 gi|148559330|ref|YP_001258119.1| hypothetical protein BOV_0076 [Brucella ovis ATCC 25840]
 gi|161618064|ref|YP_001591951.1| radical SAM protein [Brucella canis ATCC 23365]
 gi|163842351|ref|YP_001626755.1| radical SAM protein [Brucella suis ATCC 23445]
 gi|225626623|ref|ZP_03784662.1| radical SAM enzyme, Cfr family protein [Brucella ceti str. Cudo]
 gi|254694877|ref|ZP_05156705.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya]
 gi|254700891|ref|ZP_05162719.1| radical SAM protein [Brucella suis bv. 5 str. 513]
 gi|254705255|ref|ZP_05167083.1| radical SAM protein [Brucella suis bv. 3 str. 686]
 gi|254707222|ref|ZP_05169050.1| radical SAM protein [Brucella pinnipedialis M163/99/10]
 gi|254709233|ref|ZP_05171044.1| radical SAM protein [Brucella pinnipedialis B2/94]
 gi|254713344|ref|ZP_05175155.1| radical SAM protein [Brucella ceti M644/93/1]
 gi|254716302|ref|ZP_05178113.1| radical SAM protein [Brucella ceti M13/05/1]
 gi|254718297|ref|ZP_05180108.1| radical SAM protein [Brucella sp. 83/13]
 gi|256030756|ref|ZP_05444370.1| radical SAM protein [Brucella pinnipedialis M292/94/1]
 gi|256045869|ref|ZP_05448743.1| radical SAM protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256158774|ref|ZP_05456640.1| radical SAM protein [Brucella ceti M490/95/1]
 gi|256254161|ref|ZP_05459697.1| radical SAM protein [Brucella ceti B1/94]
 gi|256368543|ref|YP_003106049.1| radical SAM protein [Brucella microti CCM 4915]
 gi|260169660|ref|ZP_05756471.1| radical SAM protein [Brucella sp. F5/99]
 gi|260563156|ref|ZP_05833642.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 1 str. 16M]
 gi|260567277|ref|ZP_05837747.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
           4 str. 40]
 gi|261215209|ref|ZP_05929490.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya]
 gi|261218081|ref|ZP_05932362.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           M13/05/1]
 gi|261221308|ref|ZP_05935589.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           B1/94]
 gi|261314704|ref|ZP_05953901.1| ribosomal RNA large subunit methyltransferase N [Brucella
           pinnipedialis M163/99/10]
 gi|261316737|ref|ZP_05955934.1| ribosomal RNA large subunit methyltransferase N [Brucella
           pinnipedialis B2/94]
 gi|261321072|ref|ZP_05960269.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           M644/93/1]
 gi|261751404|ref|ZP_05995113.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
           5 str. 513]
 gi|261755967|ref|ZP_05999676.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
           3 str. 686]
 gi|261759193|ref|ZP_06002902.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
           F5/99]
 gi|265983258|ref|ZP_06095993.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
           83/13]
 gi|265987808|ref|ZP_06100365.1| ribosomal RNA large subunit methyltransferase N [Brucella
           pinnipedialis M292/94/1]
 gi|265992284|ref|ZP_06104841.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265997270|ref|ZP_06109827.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           M490/95/1]
 gi|306838909|ref|ZP_07471737.1| radical SAM enzyme, Cfr family [Brucella sp. NF 2653]
 gi|81851121|sp|Q8YEL1|RLMN_BRUME RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829674|sp|A9M6S9|RLMN_BRUC2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829675|sp|A5VN22|RLMN_BRUO2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829676|sp|B0CII9|RLMN_BRUSI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|17983908|gb|AAL53048.1| florfenicol resistance protein [Brucella melitensis bv. 1 str. 16M]
 gi|148370587|gb|ABQ60566.1| conserved hypothetical protein TIGR00048 [Brucella ovis ATCC 25840]
 gi|161334875|gb|ABX61180.1| radical SAM enzyme, Cfr family [Brucella canis ATCC 23365]
 gi|163673074|gb|ABY37185.1| radical SAM enzyme, Cfr family [Brucella suis ATCC 23445]
 gi|225618280|gb|EEH15323.1| radical SAM enzyme, Cfr family protein [Brucella ceti str. Cudo]
 gi|255998701|gb|ACU47100.1| radical SAM protein [Brucella microti CCM 4915]
 gi|260153172|gb|EEW88264.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 1 str. 16M]
 gi|260156795|gb|EEW91875.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
           4 str. 40]
 gi|260916816|gb|EEX83677.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya]
 gi|260919892|gb|EEX86545.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           B1/94]
 gi|260923170|gb|EEX89738.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           M13/05/1]
 gi|261293762|gb|EEX97258.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           M644/93/1]
 gi|261295960|gb|EEX99456.1| ribosomal RNA large subunit methyltransferase N [Brucella
           pinnipedialis B2/94]
 gi|261303730|gb|EEY07227.1| ribosomal RNA large subunit methyltransferase N [Brucella
           pinnipedialis M163/99/10]
 gi|261739177|gb|EEY27173.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
           F5/99]
 gi|261741157|gb|EEY29083.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
           5 str. 513]
 gi|261745720|gb|EEY33646.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
           3 str. 686]
 gi|262551738|gb|EEZ07728.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
           M490/95/1]
 gi|263003350|gb|EEZ15643.1| ribosomal RNA large subunit methyltransferase N [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|264660005|gb|EEZ30266.1| ribosomal RNA large subunit methyltransferase N [Brucella
           pinnipedialis M292/94/1]
 gi|264661850|gb|EEZ32111.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
           83/13]
 gi|306406025|gb|EFM62276.1| radical SAM enzyme, Cfr family [Brucella sp. NF 2653]
          Length = 411

 Score =  518 bits (1334), Expect = e-145,   Method: Composition-based stats.
 Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  AL+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPL  LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|319780692|ref|YP_004140168.1| radical SAM enzyme, Cfr family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166580|gb|ADV10118.1| radical SAM enzyme, Cfr family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 411

 Score =  517 bits (1333), Expect = e-145,   Method: Composition-based stats.
 Identities = 259/384 (67%), Positives = 309/384 (80%), Gaps = 4/384 (1%)

Query: 5   KKESLIGMMREELEEALLKIG-IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K+SLIG+ R EL E L+  G +P+R  +MR  Q+W W+YVRG+ DF GM +IS+++R  
Sbjct: 24  EKQSLIGLTRIELAETLVASGAVPERQAKMRAQQLWHWMYVRGVSDFAGMFNISKDLRAE 83

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L++HF++  PEIV+E+IS DGTRKWL RFP R  G PVEIETVYIPE+ RGTLC+SSQVG
Sbjct: 84  LDKHFTVARPEIVEEQISADGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVG 143

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTCSFC+TGTQKLVRNLTAEEIL Q+L AR  LGDFP  +  +G ++P+ GRK+SNIV
Sbjct: 144 CTLTCSFCHTGTQKLVRNLTAEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSNIV 203

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISL
Sbjct: 204 MMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAISL 263

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++DLR++LVPIN+KYPL+ LI ACR YPGLSNA+RITFEYVMLK +NDS  DA  LI
Sbjct: 264 HATNDDLRDLLVPINKKYPLKELIAACRAYPGLSNAKRITFEYVMLKDVNDSIEDAKGLI 323

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACG
Sbjct: 324 KLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACG 383

Query: 364 QLKSLSKRIPKVPR---QEMQITG 384
           QLKS S+R+ KV R   + M I G
Sbjct: 384 QLKSDSERMRKVDRLALEAMMIAG 407


>gi|306846345|ref|ZP_07478896.1| radical SAM enzyme, Cfr family [Brucella sp. BO1]
 gi|306273188|gb|EFM55079.1| radical SAM enzyme, Cfr family [Brucella sp. BO1]
          Length = 411

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 258/382 (67%), Positives = 308/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  AL+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|159185320|ref|NP_355610.2| hypothetical protein Atu2673 [Agrobacterium tumefaciens str. C58]
 gi|159140577|gb|AAK88395.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 390

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 252/376 (67%), Positives = 306/376 (81%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ REE+ EAL +IG+PQ+ V+MR SQ+W W+YVRG+ DF  M+++++E+R  L 
Sbjct: 4   KPSLIGLTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNMTNVAKELREKLK 63

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F+I  PEIV+E+IS DGTRKWL+RFP R  G PVEIETVYIPE+ RGTLC+SSQVGCS
Sbjct: 64  AAFTIARPEIVEEQISNDGTRKWLMRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGCS 123

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP      G  +PS GRK+SNIVMM
Sbjct: 124 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPSEGRKVSNIVMM 183

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF++VK +L IA+D  GLS SKRR+TLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 184 GMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGDEIGVMLAISLHA 243

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V +DLR++LVPIN+KYPL+ LI+ACR+YPG+SNARRITFEYVMLK +NDS  DA  L+++
Sbjct: 244 VRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVNDSLEDAKMLVQL 303

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+PAKINLIPFNPWPG  Y CS+   I  F++ I ++GY+SPIRTPRG DILAACGQL
Sbjct: 304 LKGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILAACGQL 363

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS S+R+ K  R   +
Sbjct: 364 KSESERMRKTERLAFE 379


>gi|307942545|ref|ZP_07657893.1| radical SAM enzyme, Cfr family [Roseibium sp. TrichSKD4]
 gi|307774184|gb|EFO33397.1| radical SAM enzyme, Cfr family [Roseibium sp. TrichSKD4]
          Length = 406

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 250/376 (66%), Positives = 308/376 (81%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+G+ RE+L EAL  IGIP +  RMR +Q+W W+YVRG+ DF  M++I++++R  L
Sbjct: 30  EKPNLVGLDREQLAEALGGIGIPVKQQRMRVAQLWHWLYVRGVSDFGAMTNIAKDLRAQL 89

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            ++FSI  PEIV E+IS DGTRKWL RFP R  G PVE+ETVYIPE+ RGTLCVSSQVGC
Sbjct: 90  EENFSIARPEIVSEQISVDGTRKWLFRFPPRGAGRPVEVETVYIPEEGRGTLCVSSQVGC 149

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTC+FC+TGTQKLVRNLT+EEIL Q+L+AR LLGDFP  +  +G ++PS GR +SNIVM
Sbjct: 150 TLTCTFCHTGTQKLVRNLTSEEILAQILMARDLLGDFPEAKTPQGAIVPSEGRLVSNIVM 209

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NVK++L IASD  GLS SKRRITLSTSG VP IAR G+EIG MLAISLH
Sbjct: 210 MGMGEPLYNFENVKRALLIASDGDGLSLSKRRITLSTSGVVPEIARTGDEIGCMLAISLH 269

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +DLR++LVPIN+K+ LE L+D CR YPGLSNA+RITFEYVMLKG+NDS  DA  L++
Sbjct: 270 AVRDDLRDVLVPINKKWSLEKLLDTCRAYPGLSNAKRITFEYVMLKGVNDSNADAKQLVQ 329

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG +Y CSD + I  F++ + R+GY+SPIRTPRG DI AACGQ
Sbjct: 330 LLKGIPAKINLIPFNPWPGSDYECSDWERIEEFADIVNRAGYASPIRTPRGRDIFAACGQ 389

Query: 365 LKSLSKRIPKVPRQEM 380
           LKS S+R+ K  R+ +
Sbjct: 390 LKSASERMRKKDREAL 405


>gi|205829900|sp|Q2K3B1|RLMN_RHIEC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 409

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 256/377 (67%), Positives = 310/377 (82%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG+ REE+  AL + G+P++ ++MR SQ+W WIYVRG+ DF  M+++++++R +L
Sbjct: 22  EKPSLIGLSREEMAAALREKGVPEKQIKMRVSQLWNWIYVRGVSDFDHMTNVAKDMREML 81

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            QHF+I  PEIV+E++S DGTRKWLLRFPAR  G PVEIE VYIPE+ RGTLC+SSQVGC
Sbjct: 82  KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 141

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SNIVM
Sbjct: 142 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 201

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD VK++L IA+D  GLS SKRR+TLSTSG VP I R GEEIGVMLAISLH
Sbjct: 202 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISLH 261

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +NDS  DA  LIK
Sbjct: 262 AVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLIK 321

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+PAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACGQ
Sbjct: 322 LLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQ 381

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS S+R+ K  R   +
Sbjct: 382 LKSESERMRKTERLAFE 398


>gi|306842623|ref|ZP_07475272.1| radical SAM enzyme, Cfr family [Brucella sp. BO2]
 gi|306287268|gb|EFM58756.1| radical SAM enzyme, Cfr family [Brucella sp. BO2]
          Length = 411

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+   L+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAATLIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|254504202|ref|ZP_05116353.1| radical SAM enzyme, Cfr family [Labrenzia alexandrii DFL-11]
 gi|222440273|gb|EEE46952.1| radical SAM enzyme, Cfr family [Labrenzia alexandrii DFL-11]
          Length = 421

 Score =  515 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 248/376 (65%), Positives = 306/376 (81%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +LIG+ REEL EAL  IG+PQ+  RMR+SQ+W W+YVRG+ DF  MS+I++++R  L
Sbjct: 38  DKPTLIGLSREELGEALGTIGVPQKQWRMRSSQLWHWLYVRGVSDFAEMSNIAKDLRSKL 97

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++ F+I  P+IV E+IS DGTRKWL +FP R  G PVE+ETVYIPE+ RGTLCVSSQVGC
Sbjct: 98  DEAFTIARPKIVSEQISVDGTRKWLFQFPPRGAGNPVEVETVYIPEEGRGTLCVSSQVGC 157

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTC+FC+TGTQKLVRNLT+EEIL Q+L+AR  LGDFP     +G ++PS GR ++NIVM
Sbjct: 158 TLTCTFCHTGTQKLVRNLTSEEILSQILIARDRLGDFPDAHTPQGAIVPSEGRLVTNIVM 217

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NVKK+L IASD  GLS SKRRITLSTSG VP I R G+EIG MLAISLH
Sbjct: 218 MGMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGDEIGCMLAISLH 277

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++ R+ILVPIN+K+ ++ L+DACR+YPGLSNA+RITFEYVMLK INDS  DAL L++
Sbjct: 278 AVRDEDRDILVPINKKWNIKELLDACRNYPGLSNAKRITFEYVMLKDINDSNEDALELVR 337

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG +Y CSD + I  F++ + R+GY+SPIRTPRG DI AACGQ
Sbjct: 338 LLKGIPAKINLIPFNPWPGSQYACSDWERIEEFADIVNRAGYASPIRTPRGRDIFAACGQ 397

Query: 365 LKSLSKRIPKVPRQEM 380
           LKS S+R+ K  R  +
Sbjct: 398 LKSTSERMRKKDRDAL 413


>gi|222087496|ref|YP_002546033.1| hypothetical protein Arad_4378 [Agrobacterium radiobacter K84]
 gi|254807146|sp|B9JCI9|RLMN_AGRRK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|221724944|gb|ACM28100.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 411

 Score =  515 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 255/377 (67%), Positives = 307/377 (81%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K SLIG+ REE+  AL + G+  + V+MR SQ+W WIYVRG+ DF  M+++S+++R +L
Sbjct: 25  PKPSLIGLTREEMGAALKEKGVADKQVKMRVSQLWNWIYVRGVSDFDAMANVSKDMREML 84

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             HF+I  PEIV+E++S DGTRKWLLRFP R  G PVE+ETVYIPE+ RGTLCVSSQVGC
Sbjct: 85  KAHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEVETVYIPEEGRGTLCVSSQVGC 144

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SLTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SN+VM
Sbjct: 145 SLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNMVM 204

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF++VK +L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLH
Sbjct: 205 MGMGEPLYNFESVKTALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLH 264

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +DLR++LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLKG+NDS  DA  LI+
Sbjct: 265 AVRDDLRDMLVPINKKYPLKELMDACRAYPGLSNARRITFEYVMLKGVNDSLEDAKGLIQ 324

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIP+KINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACGQ
Sbjct: 325 LLKGIPSKINLIPFNPWPGTNYQCSDWEQIEKFADFINAAGYASPIRTPRGRDILAACGQ 384

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS S+R+ K  R   +
Sbjct: 385 LKSDSERMRKTERLAFE 401


>gi|328541802|ref|YP_004301911.1| ribosomal RNA large subunit methyltransferase N [polymorphum gilvum
           SL003B-26A1]
 gi|326411554|gb|ADZ68617.1| Ribosomal RNA large subunit methyltransferase N [Polymorphum gilvum
           SL003B-26A1]
          Length = 414

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 249/380 (65%), Positives = 306/380 (80%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            + +LIG+ R+EL +A+ +IG+P++  RMR +Q+W W+YVRG+ DF  M++I++++R  L
Sbjct: 35  DRPTLIGLTRDELADAMGEIGVPEKQRRMRAAQLWHWLYVRGVSDFALMTNIAKDLRQQL 94

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F+I  PEIV E+IS DGTRKWL RFP R  G PVEIETVYIPE+ RGTLCVSSQVGC
Sbjct: 95  DARFTIARPEIVSEQISVDGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCVSSQVGC 154

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTC+FC+TGTQKLVRNLTAEEIL Q+L+AR  LGDFP     +G V+PS GR +SNIVM
Sbjct: 155 TLTCTFCHTGTQKLVRNLTAEEILSQILMARDRLGDFPDAATPQGAVVPSEGRLVSNIVM 214

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NVKK+L IASD  GLS SKRRITLSTSG VP IAR G EIG MLAISLH
Sbjct: 215 MGMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVVPEIARAGAEIGCMLAISLH 274

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV++DLR++LVPINRK+ +  L+DACR YPGLSNA+RITFEYVMLKG+NDS  DA  L++
Sbjct: 275 AVNDDLRDVLVPINRKWRIRDLLDACRAYPGLSNAKRITFEYVMLKGVNDSDADARELVR 334

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG +Y CSD + I  F++ + R+GY+SPIRTPRG DI AACGQ
Sbjct: 335 LLKGIPAKINLIPFNPWPGSDYECSDWERIEQFADIVNRAGYASPIRTPRGRDIFAACGQ 394

Query: 365 LKSLSKRIPKVPRQEMQITG 384
           LKS S+R+ K  R+ +    
Sbjct: 395 LKSASERMRKKDREAVAAGA 414


>gi|23500991|ref|NP_697118.1| hypothetical protein BR0077 [Brucella suis 1330]
 gi|81753358|sp|Q8G374|RLMN_BRUSU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|23346851|gb|AAN29033.1| conserved hypothetical protein TIGR00048 [Brucella suis 1330]
          Length = 411

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 256/382 (67%), Positives = 306/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  AL+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  G S SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGPSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPL  LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|327190218|gb|EGE57323.1| hypothetical protein RHECNPAF_44600102 [Rhizobium etli CNPAF512]
          Length = 411

 Score =  514 bits (1325), Expect = e-144,   Method: Composition-based stats.
 Identities = 254/377 (67%), Positives = 309/377 (81%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG+ REE+  AL + G+ ++ ++MR +Q+W WIYVRG+ DF  M+++++++R +L
Sbjct: 24  EKPSLIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 83

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            QHF+I  PEIV+E++S DGTRKWLLRFPAR  G PVEIE VYIPE+ RGTLC+SSQVGC
Sbjct: 84  KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 143

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SNIVM
Sbjct: 144 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 203

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD VK++L IA+D  GLS SKRR+TLSTSG VP I R GEEIGVMLAISLH
Sbjct: 204 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISLH 263

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +NDS  DA  LIK
Sbjct: 264 AVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLIK 323

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+PAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACGQ
Sbjct: 324 LLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQ 383

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS S+R+ K  R   +
Sbjct: 384 LKSESERMRKTERLAFE 400


>gi|209551296|ref|YP_002283213.1| radical SAM protein [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|254807197|sp|B5ZTF1|RLMN_RHILW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|209537052|gb|ACI56987.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 408

 Score =  514 bits (1325), Expect = e-144,   Method: Composition-based stats.
 Identities = 252/379 (66%), Positives = 309/379 (81%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            L+K SLIG+ REE+  AL + G+ ++ ++MR +Q+W WIYVRG+ DF  M+++++++R 
Sbjct: 19  SLEKPSLIGLSREEMGAALRERGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMRE 78

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +L QHF+I  PEIV+E++S DGTRKWLLRFP R  G PVEIE VYIPE+ RGTLC+SSQV
Sbjct: 79  MLKQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIPEEGRGTLCISSQV 138

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SNI
Sbjct: 139 GCTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNI 198

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL NFD VK++L IA+D  GLS S+RR+TLSTSG VP I R GEEIGVMLAIS
Sbjct: 199 VMMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAIS 258

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHAV +DLR+ILVPIN+KYPL+ LI+AC+ YPGLSNARRITFEYVMLK +NDS  DA  L
Sbjct: 259 LHAVRDDLRDILVPINKKYPLKELIEACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGL 318

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           IK+LKG+PAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAAC
Sbjct: 319 IKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAAC 378

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQLKS S+R+ K  R   +
Sbjct: 379 GQLKSESERMRKTERLAFE 397


>gi|116254249|ref|YP_770087.1| hypothetical protein RL4522 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|123384474|sp|Q1MAN2|RLMN_RHIL3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|115258897|emb|CAK10006.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 408

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 254/379 (67%), Positives = 309/379 (81%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            L+K SLIGM REE+  AL + G+ ++ ++MR SQ+W WIYVRG+ DF  M+++++++R 
Sbjct: 19  SLEKPSLIGMSREEMGAALREKGVAEKQIKMRVSQLWNWIYVRGVSDFDHMTNVAKDMRE 78

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +L QHF+I  PEIV+E++S DGTRKWLLRFP R  G PVEIE VYIPE+ RGTLC+SSQV
Sbjct: 79  MLKQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIPEEGRGTLCISSQV 138

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SNI
Sbjct: 139 GCTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNI 198

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL NFD VK++L IA+D  GLS S+RR+TLSTSG VP I R GEEIGVMLAIS
Sbjct: 199 VMMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAIS 258

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHAV +DLR++LVPIN+KYPL+ LI+ACR YPGLSNARRITFEYVMLK +NDS  DA  L
Sbjct: 259 LHAVRDDLRDLLVPINKKYPLKELIEACRTYPGLSNARRITFEYVMLKDVNDSLEDAKGL 318

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           IK+LKG+PAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAAC
Sbjct: 319 IKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAAC 378

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQLKS S+R+ K  R   +
Sbjct: 379 GQLKSESERMRKTERLAFE 397


>gi|190893778|ref|YP_001980320.1| hypothetical protein RHECIAT_CH0004213 [Rhizobium etli CIAT 652]
 gi|254807196|sp|B3PQY8|RLMN_RHIE6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|190699057|gb|ACE93142.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 409

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 253/377 (67%), Positives = 309/377 (81%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG+ R+E+  AL + G+ ++ ++MR +Q+W WIYVRG+ DF  M+++++++R +L
Sbjct: 22  EKPSLIGLSRQEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 81

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            QHF+I  PEIV+E++S DGTRKWLLRFPAR  G PVEIE VYIPE+ RGTLC+SSQVGC
Sbjct: 82  KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 141

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SNIVM
Sbjct: 142 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 201

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD VK++L IA+D  GLS SKRR+TLSTSG VP I R GEEIGVMLAISLH
Sbjct: 202 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISLH 261

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +NDS  DA  LIK
Sbjct: 262 AVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLIK 321

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+PAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACGQ
Sbjct: 322 LLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQ 381

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS S+R+ K  R   +
Sbjct: 382 LKSESERMRKTERLAFE 398


>gi|294851482|ref|ZP_06792155.1| cfr family radical SAM enzyme [Brucella sp. NVSL 07-0026]
 gi|294820071|gb|EFG37070.1| cfr family radical SAM enzyme [Brucella sp. NVSL 07-0026]
          Length = 411

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 256/382 (67%), Positives = 306/382 (80%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  A +  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMATARIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ILVPIN+KYPL  LI ACR YPGLSNA+RITFEYVMLK INDS  DA  L+K+
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFNPWPG  Y CSD + I  F++ +  +GY+SPIRTPRG DILAACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 387 KSESERLRKSERLALEAMMIAG 408


>gi|241206731|ref|YP_002977827.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860621|gb|ACS58288.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 409

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 253/378 (66%), Positives = 310/378 (82%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K SLIG+ REE+  AL + G+ ++ ++MR SQ+W WIYVRG+ DF  M+++++++R +
Sbjct: 21  VEKPSLIGLSREEMGAALREKGVAEKQIKMRVSQLWNWIYVRGVSDFDHMTNVAKDMREM 80

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L QHF+I  PEIV+E++S DGTRKWLLRFPAR  G PVEIE VYIPE+ RGTLC+SSQVG
Sbjct: 81  LKQHFTIERPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCLSSQVG 140

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SNIV
Sbjct: 141 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 200

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFD VK++L IA+D  GLS S+RR+TLSTSG VP I R GEEIGVMLAISL
Sbjct: 201 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAISL 260

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV +DLR++LVPIN+KYPL+ LI+ACR YPGLSNARRITFEYVMLK +NDS  DA  LI
Sbjct: 261 HAVRDDLRDLLVPINKKYPLKELIEACRTYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 320

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKG+PAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACG
Sbjct: 321 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 380

Query: 364 QLKSLSKRIPKVPRQEMQ 381
           QLKS S+R+ K  R   +
Sbjct: 381 QLKSESERMRKTDRLAFE 398


>gi|163757380|ref|ZP_02164469.1| radical SAM enzyme, Cfr family protein [Hoeflea phototrophica
           DFL-43]
 gi|162284882|gb|EDQ35164.1| radical SAM enzyme, Cfr family protein [Hoeflea phototrophica
           DFL-43]
          Length = 410

 Score =  511 bits (1316), Expect = e-143,   Method: Composition-based stats.
 Identities = 251/382 (65%), Positives = 305/382 (79%), Gaps = 3/382 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+GM R+EL  A+ + G+P+R  +MR +Q+W W+YVRG  DF  M  IS+++R  L+
Sbjct: 25  KPVLVGMDRDELIAAMAEAGVPERQRKMRVNQLWHWLYVRGSSDFADMHTISKDLRDKLD 84

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HFS+  PEIV+E+IS DGTRKWL+RFP R  G PVE+ETVYIPE+ RGTLC+SSQVGC+
Sbjct: 85  AHFSVARPEIVEEQISSDGTRKWLMRFPPRGAGRPVEVETVYIPEEGRGTLCISSQVGCT 144

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTC+FC+TGTQKLVRNLT EEIL Q+L+AR  LGDFP  +  +G ++P+ GRK++NIVMM
Sbjct: 145 LTCTFCHTGTQKLVRNLTPEEILAQLLVARDRLGDFPHKDTPQGAIVPTEGRKVTNIVMM 204

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NVKK+L IASD  GL+ S+RRITLSTSG VP I R G EIGVMLAISLHA
Sbjct: 205 GMGEPLYNFENVKKALLIASDGDGLALSRRRITLSTSGVVPEITRTGTEIGVMLAISLHA 264

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LR+ LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLKG+NDS  DA  L+++
Sbjct: 265 VRDELRDELVPINKKYPLKQLLDACRAYPGLSNARRITFEYVMLKGVNDSLSDAKELVRL 324

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD   I TF++ I  +GY+SPIRTPRG DILAACGQL
Sbjct: 325 LKGIPAKINLIPFNPWPGSAYECSDWDTIETFADFINANGYASPIRTPRGRDILAACGQL 384

Query: 366 KSLSKRIPKVPR---QEMQITG 384
           KS S+R+ K  R   + M I G
Sbjct: 385 KSESERMRKTERLALEAMMIAG 406


>gi|254472235|ref|ZP_05085635.1| radical SAM enzyme, Cfr family [Pseudovibrio sp. JE062]
 gi|211958518|gb|EEA93718.1| radical SAM enzyme, Cfr family [Pseudovibrio sp. JE062]
          Length = 420

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 247/379 (65%), Positives = 305/379 (80%), Gaps = 2/379 (0%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG+ REEL  AL  +G+P+R +RMR +Q+W W+YVRGI DF  MS++S+++R  L
Sbjct: 34  EKPSLIGLSREELGNALAAVGVPERQIRMRVNQLWHWLYVRGISDFSKMSNVSKDLRTKL 93

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F+I  PEIV E+IS DGTRKWL RFP+R  G PVE+ETVYIPE+ RGTLC+SSQVGC
Sbjct: 94  DFAFTIARPEIVTEQISVDGTRKWLFRFPSRGAGKPVEVETVYIPEEDRGTLCISSQVGC 153

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNI 182
           +LTC+FC+TGTQK+VRNLTAEEIL Q++LA+  L DFP  +  EG +  S    R+I+NI
Sbjct: 154 TLTCTFCHTGTQKMVRNLTAEEILAQLMLAKDRLNDFPDADAPEGGLDASTSNRRRITNI 213

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL NF+NVKK+L IASD  GLS SKRRITLSTSG  P IAR G+EIG MLAIS
Sbjct: 214 VMMGMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVTPEIARTGDEIGCMLAIS 273

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHAV+++LRN+LVPIN+KY LE L+ ACR YPGLSNA+RITFEYVMLKG+NDS  DA  L
Sbjct: 274 LHAVNDELRNVLVPINKKYNLETLLQACRDYPGLSNAKRITFEYVMLKGVNDSLEDAKKL 333

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +++LKGIPAKINL+PFNPWPG  Y CSD + I  F++ + R+GY+SPIRTPRG DI AAC
Sbjct: 334 VQLLKGIPAKINLLPFNPWPGSPYECSDWEQIEEFADVVNRAGYASPIRTPRGRDIFAAC 393

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQLKS S+R+ K  R+ ++
Sbjct: 394 GQLKSASERLRKSEREALE 412


>gi|163867325|ref|YP_001608519.1| hypothetical protein Btr_0020 [Bartonella tribocorum CIP 105476]
 gi|205829668|sp|A9IL44|RLMN_BART1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|161016966|emb|CAK00524.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 408

 Score =  508 bits (1308), Expect = e-142,   Method: Composition-based stats.
 Identities = 250/376 (66%), Positives = 304/376 (80%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ ++E+ +AL  +G+P+R  RMR  Q+W W+YVRG+ +F  M +IS+ ++  L 
Sbjct: 28  KLSLIGLSQDEIVQALKTVGVPERQTRMRARQLWHWLYVRGVSNFDEMLNISKVMQETLK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HFSI  PEIV E+IS DGTRKWLLRFPAR  G PVEIETVYIPE+ RGTLC+SSQVGC+
Sbjct: 88  HHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIPEEGRGTLCLSSQVGCT 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ LVRNLTAEEIL Q+L+AR  LGDFP     +G ++P  GRK++NIVMM
Sbjct: 148 LTCSFCHTGTQMLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPVEGRKVTNIVMM 207

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N++ VKK+L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISLHA
Sbjct: 208 GMGEPLYNYEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEEIGVMLAISLHA 267

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V + +R++LVPIN+KYPL +L+DACR+YPGLSNA+RITFEYVMLK INDS  DA  LI++
Sbjct: 268 VHDTVRDMLVPINKKYPLTLLMDACRNYPGLSNAKRITFEYVMLKDINDSLDDAKRLIQL 327

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD + I  F++ + ++GY+SPIRTPRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRTPRGRDILAACGQL 387

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS S+R+ K  R +++
Sbjct: 388 KSASERLRKSERLKLE 403


>gi|304392673|ref|ZP_07374613.1| radical SAM enzyme, Cfr family [Ahrensia sp. R2A130]
 gi|303295303|gb|EFL89663.1| radical SAM enzyme, Cfr family [Ahrensia sp. R2A130]
          Length = 423

 Score =  507 bits (1307), Expect = e-142,   Method: Composition-based stats.
 Identities = 238/387 (61%), Positives = 300/387 (77%), Gaps = 7/387 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIGM R ++  AL++ GIPQ+  RMR SQ+W+WIY  G  DF  M++I++++R  L
Sbjct: 26  EKPSLIGMDRADMAAALIEAGIPQKQARMRASQLWQWIYWYGHTDFAAMTNIAKDLRAKL 85

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F++  PE+V+E IS DGTRKWL RFPAR  G PVE+ETVYIPE  RGTLC+SSQVGC
Sbjct: 86  ADNFTLERPELVEELISTDGTRKWLFRFPARGAGAPVEVETVYIPESDRGTLCISSQVGC 145

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-------GCEDIEGMVIPSVGR 177
           +LTC+FC+TGTQKLVRNLTAEEIL+Q+++AR  LGDFP         ++ E   IP   R
Sbjct: 146 TLTCTFCHTGTQKLVRNLTAEEILMQLMVARDRLGDFPDKPPVKAAAKNEEEAFIPDGDR 205

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
           K+SNIVMMGMGEPL NF++VKK+L IASD+ GLS SKRRITLSTSG VP I R G+EIG 
Sbjct: 206 KVSNIVMMGMGEPLYNFEHVKKALLIASDNEGLSLSKRRITLSTSGVVPGIERTGDEIGC 265

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LAISLHA +++LR++LVPIN+KYP+  L+DACR+YPG SN++RITFEYVML G+NDS  
Sbjct: 266 GLAISLHATNDELRDVLVPINKKYPIAKLLDACRNYPGASNSKRITFEYVMLDGVNDSLA 325

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
           DA  L+++LKGIPAKINLIPFNPWPG +Y CS  + I  F+E +  +GY+SP+RTPRG D
Sbjct: 326 DAKELVRLLKGIPAKINLIPFNPWPGSQYECSSWEKIEAFAEFVNANGYASPVRTPRGRD 385

Query: 358 ILAACGQLKSLSKRIPKVPRQEMQITG 384
           I AACGQLKS S+R+ K  R+  +   
Sbjct: 386 IFAACGQLKSESERMRKKDRETAEFAA 412


>gi|222150075|ref|YP_002551032.1| Fe-S-cluster redox protein [Agrobacterium vitis S4]
 gi|254807147|sp|B9JU97|RLMN_AGRVS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|221737057|gb|ACM38020.1| Fe-S-cluster redox protein [Agrobacterium vitis S4]
          Length = 410

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 252/387 (65%), Positives = 308/387 (79%), Gaps = 3/387 (0%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M    K +LIG  REE+ E L +IG+  + VRMR +Q+W WIYVRG+ DF  M+++++++
Sbjct: 19  MTGATKPTLIGQTREEMGEMLREIGVADKQVRMRVAQLWNWIYVRGVSDFDQMTNVAKDM 78

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L  HF+I  PEIV+E++S DGTRKWLLR+P R  G PVE+E VYIPE+ RGTLCVSS
Sbjct: 79  REKLKAHFTIARPEIVEEQVSNDGTRKWLLRYPPRGAGRPVEVECVYIPEEGRGTLCVSS 138

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+LTC+FC+TGTQKLVRNLTAEE+L Q+LLAR  LGDFP  +   G ++P+ GRKI+
Sbjct: 139 QVGCTLTCTFCHTGTQKLVRNLTAEEVLSQLLLARDRLGDFPDRDAPVGAMVPNEGRKIT 198

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLA
Sbjct: 199 NMVMMGMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLA 258

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHAV ++LR++LVPIN+KYPL+ LI+ACR+YPGLSNARRITFEYVMLK +NDS  DA 
Sbjct: 259 ISLHAVRDELRDLLVPINKKYPLKDLIEACRNYPGLSNARRITFEYVMLKDVNDSLEDAK 318

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI++LKGIP+KINLIPFNPWPG  Y CSD   I+ F++ I  +GY+SPIRTPRG DILA
Sbjct: 319 GLIQLLKGIPSKINLIPFNPWPGTNYQCSDWDQIMKFADFINSAGYASPIRTPRGRDILA 378

Query: 361 ACGQLKSLSKRIPKVPR---QEMQITG 384
           ACGQLKS S+R+ K  R   + M I G
Sbjct: 379 ACGQLKSESERMRKTERLAYEAMMIVG 405


>gi|90421104|ref|ZP_01229006.1| radical SAM enzyme, coproporphyrinogen III oxidase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334596|gb|EAS48376.1| radical SAM enzyme, coproporphyrinogen III oxidase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 413

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/381 (60%), Positives = 299/381 (78%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   +K SL+G+ R  L EAL  +G+P + +RMR +Q+W W+YVRG+ DF  M++++  +
Sbjct: 23  MAGDEKPSLVGLDRAALGEALSAVGVPDKQIRMRVAQLWHWLYVRGVADFSQMANVAGTL 82

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L++ ++I  PE+VDE+IS DGTRKWL RFP R  G PVEIETVYIPE+ RGTLC+SS
Sbjct: 83  RQALHEAYTIARPEVVDEQISVDGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISS 142

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+LTC+FC+TGTQ+LVRNL  +EI+ Q+L AR  LGD P      G ++P+ GR ++
Sbjct: 143 QVGCTLTCTFCHTGTQRLVRNLLPDEIVGQILAARERLGDLPDAATPAGAIVPNGGRLVT 202

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V+MGMGEPL N+DNV++++++ASD  GLS SKRRITLSTSG VP+I + GEE+GV LA
Sbjct: 203 NVVLMGMGEPLYNYDNVRQAMAVASDGEGLSLSKRRITLSTSGVVPSIVKAGEEMGVSLA 262

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHAV ++LR+ LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLK +NDS  DA 
Sbjct: 263 ISLHAVRDELRDELVPINKKYPLKDLLDACRAYPGLSNARRITFEYVMLKDVNDSMADAK 322

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L++IL+GIPAKINLIPFNPWPG  Y CSD   I  F++ + ++GY+SPIRTPRG DI A
Sbjct: 323 ELVRILRGIPAKINLIPFNPWPGSAYECSDWDQIERFADYVNQAGYASPIRTPRGRDIFA 382

Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381
           ACGQLKS S+R+ K  R  ++
Sbjct: 383 ACGQLKSESERLKKSARDRLE 403


>gi|319406423|emb|CBI80063.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 409

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 250/381 (65%), Positives = 301/381 (79%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +    K  LIG+  +E+ +AL  IG+P+   +MR  Q+W W+YVRGI  F  M +IS+ +
Sbjct: 23  ITKQPKLPLIGLSHDEMAQALQAIGVPEHQTQMRVRQLWHWLYVRGISHFDEMLNISKPM 82

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R +L +HFSI  PEIV E+IS DGTRKWLLRFPA   G PVE+ETVYIPE+ RGTLC+SS
Sbjct: 83  REMLKEHFSIARPEIVAEQISQDGTRKWLLRFPASGAGKPVEVETVYIPEEGRGTLCISS 142

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+LTCSFC+TGTQKLVRNLT EEIL+Q+L+AR  LGDFP  +  +  +IP  GRKI+
Sbjct: 143 QVGCTLTCSFCHTGTQKLVRNLTVEEILVQLLVARDCLGDFPDKKTPDSAIIPIEGRKIT 202

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIVMMGMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLA
Sbjct: 203 NIVMMGMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVVPRIIRTGKEIGVMLA 262

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHAV + LR+ILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS  DA 
Sbjct: 263 ISLHAVHDALRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDAR 322

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI++LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I ++GY+SPIR PRG DILA
Sbjct: 323 RLIQLLKGIPAKINLIPFNPWPGSNYQCSDWEHIERFADIINKAGYASPIRVPRGRDILA 382

Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381
           ACGQLKS SKR+ K  R  ++
Sbjct: 383 ACGQLKSASKRLAKSERMRLE 403


>gi|240849701|ref|YP_002971089.1| hypothetical protein Bgr_00190 [Bartonella grahamii as4aup]
 gi|240266824|gb|ACS50412.1| hypothetical protein Bgr_00190 [Bartonella grahamii as4aup]
          Length = 408

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 251/376 (66%), Positives = 301/376 (80%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ ++E+ +AL  +G+P+   RMR  Q+W W+YVRG+ +F  M +IS+ ++  L 
Sbjct: 28  KLSLIGLSQDEMVQALKTVGVPEHQTRMRVRQLWHWLYVRGVSNFDEMLNISKAMQETLK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HFSI  PEIV E+IS DGTRKWLLRFPAR  G PVEIETVYIPE+ RGTLC+SSQVGC+
Sbjct: 88  CHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIPEEGRGTLCLSSQVGCT 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ LVRNLTAEEIL Q+L+AR  LGDFP     +G ++P  GRKI+NIVMM
Sbjct: 148 LTCSFCHTGTQMLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPIEGRKITNIVMM 207

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLAISLHA
Sbjct: 208 GMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEEIGVMLAISLHA 267

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V + LR++LVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK INDS  DA  LIK+
Sbjct: 268 VHDTLRDMLVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKDINDSLDDAKRLIKL 327

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD + I  F++ + ++GY+SPIR PRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDILAACGQL 387

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS S+R+ K  R  ++
Sbjct: 388 KSASERLRKSERLRLE 403


>gi|49473706|ref|YP_031748.1| hypothetical protein BQ00190 [Bartonella quintana str. Toulouse]
 gi|81647409|sp|Q6G1C0|RLMN_BARQU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|49239209|emb|CAF25526.1| hypothetical protein BQ00190 [Bartonella quintana str. Toulouse]
          Length = 409

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 255/378 (67%), Positives = 304/378 (80%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ + E+ EAL  IG+P++  RMR  Q+W W+YVRG+ +F  + +IS+ +R +L 
Sbjct: 28  KRSLIGLSQNEMAEALKAIGVPEQQTRMRVRQLWHWLYVRGVSNFDEILNISKPIREMLK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HFSI  PEIV E+IS DGTRKWLLRFPAR  G PVEIETVYIPE+ RGTLC+SSQVGC+
Sbjct: 88  NHFSIARPEIVGEQISKDGTRKWLLRFPAREDGRPVEIETVYIPEEGRGTLCLSSQVGCT 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFCYTGTQ LVRNLTAEEIL Q+L+AR  LGDFP     +G ++P  GRKI+NIVMM
Sbjct: 148 LTCSFCYTGTQVLVRNLTAEEILAQLLVARDCLGDFPNRTTPDGAIVPVEGRKITNIVMM 207

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLA+SLHA
Sbjct: 208 GMGEPLYNFEVVKKALLIASDGDGLSLSKRRITLSTSGVVPEIVRAGEEIGVMLAVSLHA 267

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V + LR++LVPIN+KYPL +LIDACR+YPGLSNA+RITFEYVMLKGINDS  DA  LI++
Sbjct: 268 VHDTLRDMLVPINKKYPLALLIDACRNYPGLSNAKRITFEYVMLKGINDSLDDAKRLIQL 327

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD + I  F++ + ++GY+SPIR PRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDILAACGQL 387

Query: 366 KSLSKRIPKVPRQEMQIT 383
           KS S+R+ K  R +++  
Sbjct: 388 KSASERLRKSGRLQIEYA 405


>gi|319403510|emb|CBI77089.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 409

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 250/376 (66%), Positives = 302/376 (80%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  LIG+  +E+ +AL  IG+P+   +MR  QIW W+YVRG+  F  M +IS+ +R +L 
Sbjct: 28  KLPLIGLSHDEIAQALQAIGVPEHQTQMRVRQIWHWLYVRGVSHFDEMLNISKPMREMLK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HFSI  PEIV E+IS DGTRKWLLRFPA   G PVEIETVYIPE++RGTLC+SSQVGC+
Sbjct: 88  EHFSIARPEIVAEQISQDGTRKWLLRFPASGAGKPVEIETVYIPEEARGTLCISSQVGCT 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT EEIL+Q+L+AR  LGDFP  +  +G +IP  GRKI+N+VMM
Sbjct: 148 LTCSFCHTGTQKLVRNLTVEEILVQLLVARDCLGDFPDKKTPDGAIIPIEGRKITNVVMM 207

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG +P I R G+EIGVMLAISLHA
Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLHA 267

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V + LR+ILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS  DA  LI++
Sbjct: 268 VHDTLRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDARKLIQL 327

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I ++GY+SPIR PRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADIINKAGYASPIRMPRGRDILAACGQL 387

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS SKR+ K  R  ++
Sbjct: 388 KSASKRLAKSERIRLE 403


>gi|49474851|ref|YP_032892.1| hypothetical protein BH00200 [Bartonella henselae str. Houston-1]
 gi|81648360|sp|Q6G592|RLMN_BARHE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|49237656|emb|CAF26836.1| hypothetical protein BH00200 [Bartonella henselae str. Houston-1]
          Length = 408

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 250/376 (66%), Positives = 301/376 (80%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ ++E+ EAL  IGIP+R  RMR  Q+W W+YVRG+ +F  M +IS+ ++ +  
Sbjct: 28  KLSLIGLSQDEMAEALKAIGIPERQTRMRVRQLWHWLYVRGVSNFDEMLNISKPMQEIFK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HFSI  PEI  E+IS DGTRKWLLRFP R  G PVEIETVYIPE+ RGTLC+SSQVGC+
Sbjct: 88  KHFSIARPEIAGEQISKDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCLSSQVGCT 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFCYTGTQ LVRNLTAEEIL Q+L+AR  LGDFP     +G ++P  GRKI+NIVMM
Sbjct: 148 LTCSFCYTGTQVLVRNLTAEEILAQLLVARDCLGDFPDRNTPDGAIVPVEGRKITNIVMM 207

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP + R GEEIGVMLAISLHA
Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVVPGMIRTGEEIGVMLAISLHA 267

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V++ LR++LVPIN+KYPL +L+DACR YPGLSNA+RITFEYVMLK +NDS  DA  L+++
Sbjct: 268 VNDTLRDMLVPINKKYPLALLMDACRQYPGLSNAKRITFEYVMLKDVNDSLDDAKRLVQL 327

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD + I  F++ + ++GY+SPIR PRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDILAACGQL 387

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS S+R+ K  R  ++
Sbjct: 388 KSASERLRKSERLHLE 403


>gi|209883455|ref|YP_002287312.1| radical SAM enzyme, Cfr family [Oligotropha carboxidovorans OM5]
 gi|209871651|gb|ACI91447.1| radical SAM enzyme, Cfr family [Oligotropha carboxidovorans OM5]
          Length = 404

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 228/377 (60%), Positives = 286/377 (75%), Gaps = 6/377 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG+ R+EL   L ++G+  +  +MR  Q+W W+YVRG R F+ MS++S+++R  L
Sbjct: 28  EKPSLIGLSRDELMARLGELGVADKQRKMRAQQLWHWMYVRGARSFEEMSNVSKDMRAQL 87

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             HF++  PE+V E++S DGTRKWLLR P   +G   E+E VYIPE  RGTLCVSSQVGC
Sbjct: 88  AAHFTVDRPEVVAEQVSNDGTRKWLLRMPGDGVGRAHEVECVYIPETDRGTLCVSSQVGC 147

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ QV++AR  L D+   E       P+  R ++N+VM
Sbjct: 148 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWVDRET------PNGNRLVTNVVM 201

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I SD  G+  S+RRITLSTSG VPNIAR+GEE GVMLAISLH
Sbjct: 202 MGMGEPLYNFDAVRDALKIMSDGEGIGLSRRRITLSTSGVVPNIARIGEETGVMLAISLH 261

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LRN LVP+NRKYP+  L+DACR+YPG SNARRITFEYVMLKG+NDS  DA  L+K
Sbjct: 262 AVRDELRNELVPLNRKYPIAQLLDACRNYPGASNARRITFEYVMLKGVNDSLDDAKLLVK 321

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD + I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 322 LLKGIPAKINLIPFNPWPGSVYECSDWEQIEQFSEYVFNAGYSSPVRTPRGRDILAACGQ 381

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    R  ++
Sbjct: 382 LKSETEKLSVRERDALR 398


>gi|115522068|ref|YP_778979.1| radical SAM protein [Rhodopseudomonas palustris BisA53]
 gi|122298191|sp|Q07VN5|RLMN_RHOP5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|115516015|gb|ABJ03999.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris BisA53]
          Length = 403

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 232/379 (61%), Positives = 280/379 (73%), Gaps = 2/379 (0%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L K SLIG+ R EL E L  IG+     +MR  Q+W WIYVRG  DF  M+ IS+E+R  
Sbjct: 20  LAKPSLIGLSRPELMERLGGIGVAAAQRKMRAQQLWHWIYVRGATDFAQMTSISKELRAQ 79

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQV 122
           L +HF++  PE+V E+IS DGTRKWLLR P+   G    E+E VYIPE  RGTLCVSSQV
Sbjct: 80  LAEHFTVDRPEVVTEQISNDGTRKWLLRLPSGQAGERAHEVECVYIPETDRGTLCVSSQV 139

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L CSFC+TGTQKLVRNLTA EI+ QV++A+  LGD+P              R I+N+
Sbjct: 140 GCTLNCSFCHTGTQKLVRNLTAGEIVGQVMVAKDRLGDWP-MAVASTQDAGENNRLITNV 198

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL NF+ V+ +L I SD+ G+  S+RRITLSTSG VPNI R G+EIGVMLAIS
Sbjct: 199 VMMGMGEPLYNFEAVRDALLIVSDNEGIGLSRRRITLSTSGVVPNIFRTGDEIGVMLAIS 258

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHAV ++LRN LVP+N+KYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L
Sbjct: 259 LHAVRDELRNELVPLNKKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLL 318

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K+LKG+PAKINLIPFNPWPG  Y CSD   I  FSE I  +GYSSP+RTPRG DILAAC
Sbjct: 319 VKLLKGVPAKINLIPFNPWPGSAYQCSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAAC 378

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQLKS ++++    R  ++
Sbjct: 379 GQLKSETEKLSARERDALR 397


>gi|121601967|ref|YP_989610.1| radical SAM protein [Bartonella bacilliformis KC583]
 gi|205829667|sp|A1UUF7|RLMN_BARBK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120614144|gb|ABM44745.1| radical SAM enzyme, Cfr family [Bartonella bacilliformis KC583]
          Length = 414

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 252/377 (66%), Positives = 300/377 (79%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           + +SLIG+  +E+ +AL  IG+P+   RMR  Q+W W YVRG+  F  M +IS+ +R +L
Sbjct: 28  QSQSLIGLSHDEMVQALRSIGVPEHQTRMRVRQLWHWFYVRGVSSFDEMFNISKPMREML 87

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +FSI YPEIV+E+IS DGT KWLLRFPAR  G PVEIETVYIP + RGTLCVSSQVGC
Sbjct: 88  KDNFSIAYPEIVEEQISKDGTYKWLLRFPARGAGKPVEIETVYIPGEGRGTLCVSSQVGC 147

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFCYTGTQKLVRNLTAEEILLQ+L AR+ LGDFPG +  +   +    RKI+NIVM
Sbjct: 148 TLTCSFCYTGTQKLVRNLTAEEILLQLLFARNRLGDFPGKDKPDHSSLSEERRKITNIVM 207

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R GEEIGVMLA+SLH
Sbjct: 208 MGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRAGEEIGVMLAVSLH 267

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV + LR++LVPIN+KYPL ML++ACR+YPGLSNA+RITFEYVMLK +NDS  DA  LIK
Sbjct: 268 AVCDSLRDVLVPINKKYPLSMLMEACRNYPGLSNAKRITFEYVMLKDVNDSLDDAKKLIK 327

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I R+GY+SPIR PRG DILAACG 
Sbjct: 328 LLKGIPAKINLIPFNPWPGSHYECSDWEQIERFADVINRAGYASPIRMPRGRDILAACGN 387

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS S+R+ K  R +++
Sbjct: 388 LKSTSERLRKSERLQLE 404


>gi|205829897|sp|Q6NCS3|RLMN_RHOPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 399

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 228/377 (60%), Positives = 284/377 (75%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R +L + L  +G+     +MR  Q+W W+YVRG RDF  M+++S+E+R +L 
Sbjct: 23  KPSLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRAMLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGC 124
           +HF++  PE+V E+IS DGTRKWLLR P+   G    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 83  EHFTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 142

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ+LVRNLTA EI+ QV++AR  LGD+   E       P+  R I+NIVM
Sbjct: 143 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRET------PNGNRLITNIVM 196

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I SD+ G+  S+RRITLSTSG VPNI R G+EIGVMLAISLH
Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 256

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L++
Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQ 316

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD   I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 317 LLKGIPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 376

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    R  ++
Sbjct: 377 LKSETEKLSVRERNALR 393


>gi|319898214|ref|YP_004158307.1| Fe-S containing enzyme [Bartonella clarridgeiae 73]
 gi|319402178|emb|CBI75709.1| putative Fe-S containing enzyme [Bartonella clarridgeiae 73]
          Length = 411

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 246/376 (65%), Positives = 299/376 (79%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R+E+ +AL  IG+P+    MR  Q+W W+YVRG+ +F  M +IS+ +R +  
Sbjct: 28  KLSLIGLSRDEMTQALQVIGVPEHQKGMRVRQLWHWLYVRGVSNFDEMLNISKPMREMFK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HFSI  P+IV E+IS DGTRKWLL+FPA     PVEIE VYIPE+ RGTLC+SSQVGC+
Sbjct: 88  DHFSIARPKIVAEQISQDGTRKWLLQFPASGTERPVEIEMVYIPEERRGTLCISSQVGCT 147

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT EEIL+Q+L+AR  LGDFP     +G +IP  GRKI+NIVMM
Sbjct: 148 LTCSFCHTGTQKLVRNLTTEEILVQLLVARDCLGDFPDKNIPDGAIIPIEGRKITNIVMM 207

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG +P I R G+EIGVMLAISLHA
Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLHA 267

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V + LRNILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS  DA  L+++
Sbjct: 268 VHDKLRNILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLGDAKRLVQL 327

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD + I  F++ + ++GY+SPIR PRG DILAACGQL
Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADIVNKAGYASPIRMPRGRDILAACGQL 387

Query: 366 KSLSKRIPKVPRQEMQ 381
           KS S+R+ K  R E++
Sbjct: 388 KSASERLRKSERMELE 403


>gi|39933473|ref|NP_945749.1| hypothetical protein RPA0396 [Rhodopseudomonas palustris CGA009]
 gi|39647319|emb|CAE25840.1| Cfr family protein [Rhodopseudomonas palustris CGA009]
          Length = 424

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 228/377 (60%), Positives = 284/377 (75%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R +L + L  +G+     +MR  Q+W W+YVRG RDF  M+++S+E+R +L 
Sbjct: 48  KPSLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRAMLA 107

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGC 124
           +HF++  PE+V E+IS DGTRKWLLR P+   G    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 108 EHFTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 167

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ+LVRNLTA EI+ QV++AR  LGD+   E       P+  R I+NIVM
Sbjct: 168 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRET------PNGNRLITNIVM 221

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I SD+ G+  S+RRITLSTSG VPNI R G+EIGVMLAISLH
Sbjct: 222 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 281

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L++
Sbjct: 282 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQ 341

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD   I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 342 LLKGIPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 401

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    R  ++
Sbjct: 402 LKSETEKLSVRERNALR 418


>gi|192288832|ref|YP_001989437.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris TIE-1]
 gi|254807199|sp|B3Q9D7|RLMN_RHOPT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|192282581|gb|ACE98961.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris TIE-1]
          Length = 399

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 228/377 (60%), Positives = 283/377 (75%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R +L + L  +G+     +MR  Q+W W+YVRG RDF  M+++S+E+R  L 
Sbjct: 23  KPSLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRATLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGC 124
           +HF++  PE+V E+IS DGTRKWLLR P+   G    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 83  EHFTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 142

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ+LVRNLTA EI+ QV++AR  LGD+   E       P+  R I+NIVM
Sbjct: 143 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRET------PNGNRLITNIVM 196

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I SD+ G+  S+RRITLSTSG VPNI R G+EIGVMLAISLH
Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 256

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L++
Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQ 316

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD   I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 317 LLKGIPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 376

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    R  ++
Sbjct: 377 LKSETEKLSVRERNALR 393


>gi|260429104|ref|ZP_05783081.1| radical SAM enzyme, Cfr family [Citreicella sp. SE45]
 gi|260419727|gb|EEX12980.1| radical SAM enzyme, Cfr family [Citreicella sp. SE45]
          Length = 398

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 208/379 (54%), Positives = 279/379 (73%), Gaps = 8/379 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +++G+ R+ L  AL+++G P++  +MR +Q+W+WIY  G+RDF  M++++++ R  L 
Sbjct: 23  KLNIVGLTRDALRAALIEMGTPEKQAKMRVNQVWQWIYHWGVRDFSVMTNLAKDYRAKLE 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HF I  PEIV +++S DGTRK+L+R     I G  E+ETVYIPE+ RGTLC+SSQVGC+
Sbjct: 83  AHFEIALPEIVSKQVSADGTRKYLVR-----IAGGHEVETVYIPEEGRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ QV+LAR  L ++P      G   P   R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAGEIVGQVMLARDDLDEWPAPGTGTGEDGP---RLLSNIVLM 194

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ I  D  G++ S+RRITLSTSG VP IAR  EEIG ++A+S HA
Sbjct: 195 GMGEPLYNFDNVRDAMKIVMDGEGIALSRRRITLSTSGVVPEIARCAEEIGCLMAVSFHA 254

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN LVPIN+++ +E L++A R YP LSN+ RITFEYVMLK +NDS  DA  L+ +
Sbjct: 255 TTDEVRNRLVPINKRWNIEELLNALREYPRLSNSERITFEYVMLKDVNDSDADARRLVNL 314

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAKINLIPFN WPG  Y  SD + I  F++ + ++GY+SPIRTPRG DI+AACGQL
Sbjct: 315 IKGIPAKINLIPFNEWPGAPYERSDWERIERFADIVHKAGYASPIRTPRGEDIMAACGQL 374

Query: 366 KSLSKRIPKVPRQEMQITG 384
           KS ++R  K   Q    TG
Sbjct: 375 KSATERARKSRAQIAAETG 393


>gi|319407894|emb|CBI81546.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 405

 Score =  498 bits (1282), Expect = e-139,   Method: Composition-based stats.
 Identities = 246/378 (65%), Positives = 297/378 (78%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+  +E+ +AL +IG+P+   RMR  Q+W W+YVRG+  F  M +I++ +R +L 
Sbjct: 24  KLSLIGLSHDEMVQALEEIGVPKHQTRMRVRQLWHWLYVRGVSHFDEMLNIAKPMRRMLQ 83

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HFSI  PEIV+E+ S DGT KWLLRFPAR  G PVEIETVYIPE+ RGTLC+SSQVGC+
Sbjct: 84  NHFSIARPEIVEEQTSNDGTCKWLLRFPARGAGKPVEIETVYIPEEGRGTLCISSQVGCT 143

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ LVRNLTAEEIL Q+L+AR  LGDFP     +G  +   GRK++NIVMM
Sbjct: 144 LTCSFCHTGTQTLVRNLTAEEILAQLLVARDRLGDFPEKNTPDGAAVSIEGRKVTNIVMM 203

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ VKK+L IASD  GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA
Sbjct: 204 GMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRAGKEIGVMLAISLHA 263

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V + LR+ILVPIN+KYPL +L+DACR+YPGLSNA+RITFEYVMLK +NDS  DA  L+++
Sbjct: 264 VHDALRDILVPINKKYPLTLLMDACRNYPGLSNAKRITFEYVMLKDVNDSLDDAKQLVQL 323

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFN WPG  Y CSD + I  F++ I ++GY+SP+R PRG DILAACGQL
Sbjct: 324 LKGIPAKINLIPFNSWPGSHYQCSDWEQIERFADVINQAGYASPVRMPRGRDILAACGQL 383

Query: 366 KSLSKRIPKVPRQEMQIT 383
           KS S+R+ K  R   + T
Sbjct: 384 KSASERLRKSERLHCENT 401


>gi|299133126|ref|ZP_07026321.1| radical SAM enzyme, Cfr family [Afipia sp. 1NLS2]
 gi|298593263|gb|EFI53463.1| radical SAM enzyme, Cfr family [Afipia sp. 1NLS2]
          Length = 403

 Score =  497 bits (1281), Expect = e-139,   Method: Composition-based stats.
 Identities = 223/377 (59%), Positives = 286/377 (75%), Gaps = 6/377 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            + SLIG+ R EL   L ++G+P++  +MR  Q+W W+YVRG + F  M+++S+++R  L
Sbjct: 27  DRPSLIGLSRAELMACLGELGVPEKQRKMRAQQLWHWMYVRGAQTFADMTNVSKDMRTQL 86

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              F++  PE+V E+IS DGTRKWLLR P   +G   E+E VYIPE  RGTLCVSSQVGC
Sbjct: 87  EARFTVDRPEVVAEQISNDGTRKWLLRLPGDGVGRAHEVECVYIPETDRGTLCVSSQVGC 146

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ QV++AR  L D+   E       P+  R ++N+VM
Sbjct: 147 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWVDRET------PNGNRLVTNVVM 200

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L+I  D+ G++ S+RRITLSTSG VPNI R+GEE GVMLAISLH
Sbjct: 201 MGMGEPLYNFDAVRDALNIVMDNEGIALSRRRITLSTSGVVPNIGRMGEETGVMLAISLH 260

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LRN LVP+N+KYPL  L+DACR+YPG SN+RRITFEYVMLKG+NDS  DA  L+K
Sbjct: 261 AVRDELRNELVPLNKKYPLAQLLDACRNYPGASNSRRITFEYVMLKGVNDSLDDAKLLVK 320

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG +Y CSD + I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 321 LLKGIPAKINLIPFNPWPGSKYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 380

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    R  ++
Sbjct: 381 LKSETEKLSVRERDALR 397


>gi|86747220|ref|YP_483716.1| hypothetical protein RPB_0093 [Rhodopseudomonas palustris HaA2]
 gi|123293381|sp|Q2J405|RLMN_RHOP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|86570248|gb|ABD04805.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 399

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 226/377 (59%), Positives = 284/377 (75%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R EL E L  IG+     +MR  Q+W W+YVRG RDF  M+++S+E+R  L 
Sbjct: 23  KPSLIGLSRAELAERLGAIGVAPAQRKMRAQQLWHWMYVRGARDFAEMTNVSKEMRATLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +H ++  PE+V E+IS DGTRKWLLR P+   +    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 83  EHCTVDRPEVVAEQISADGTRKWLLRLPSGDDVQKAHEVECVYIPETDRGTLCVSSQVGC 142

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ QV++AR  LGD+   E       P+  R ++N+VM
Sbjct: 143 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRET------PNGNRLVTNVVM 196

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+ V+ +L I +D+ G+  S+RR+TLSTSG VPNIAR G+EIGVMLAISLH
Sbjct: 197 MGMGEPLYNFEAVRDALLIVTDNEGIGISRRRVTLSTSGVVPNIARTGDEIGVMLAISLH 256

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L++
Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARRLVQ 316

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG +Y CSD   I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 317 LLKGIPAKINLIPFNPWPGSKYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 376

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    R  ++
Sbjct: 377 LKSETEKLSVRERDALR 393


>gi|319404936|emb|CBI78538.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 409

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 250/377 (66%), Positives = 297/377 (78%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K  LIG+ ++E+ +AL  IG+P+   RMR  Q+W W+YVRG+  F  M +IS+ +R +L
Sbjct: 27  PKLPLIGLSQDEMAQALRIIGVPEHQTRMRVHQLWHWLYVRGVSHFDEMLNISKPMRKML 86

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             HFSI  PEIV E+IS DGTRKWLLRFPA     PVEIE VYIPE+ RGTLCVSSQVGC
Sbjct: 87  KDHFSIARPEIVAEQISQDGTRKWLLRFPASGTERPVEIEMVYIPEEGRGTLCVSSQVGC 146

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQKLVRNLTAEEIL+Q+L+AR  LGDFP      G +IP  GRKI+NIVM
Sbjct: 147 TLTCSFCHTGTQKLVRNLTAEEILVQLLVARDCLGDFPDKNTPNGAIIPIEGRKITNIVM 206

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+ VKK+L IASD  G S SKRRITLSTSG +P I R G+EIGVMLAISLH
Sbjct: 207 MGMGEPLYNFEAVKKALLIASDGNGFSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLH 266

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV + LR+ILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS  DA  LI+
Sbjct: 267 AVHDTLRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDAKKLIQ 326

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD + I  F++ I ++GY+SPIR PRG DILAACGQ
Sbjct: 327 LLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADLINKAGYASPIRMPRGRDILAACGQ 386

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS SKR+ K  R  ++
Sbjct: 387 LKSASKRLCKSERMRLE 403


>gi|86139440|ref|ZP_01058009.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. MED193]
 gi|85823943|gb|EAQ44149.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. MED193]
          Length = 395

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 204/379 (53%), Positives = 273/379 (72%), Gaps = 9/379 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM R+ + +AL+ IG+P++  +MR  QIW+WIY  G RDF  M+++S+ +R  L 
Sbjct: 23  KTNLVGMTRDAMRQALVGIGVPEKQAKMRVGQIWQWIYQWGKRDFSEMTNLSKALRAQLE 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+
Sbjct: 83  EGFEIAIPEVVSKQVSEDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ QV++AR  L ++P    + G   P   R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAAEIIGQVMMARDDLDEWP----VPGTRNPDEARLLSNIVLM 193

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ IA D  G+  S+RRITLSTSG VP IAR  +EIG +LA+S HA
Sbjct: 194 GMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAQEIGCLLAVSFHA 253

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ LVPIN+++ +E L++A R YP L+N+ RITFEYVML  +NDS  DA  L+K+
Sbjct: 254 TTDEVRDKLVPINKRWNIEALLEALRAYPRLANSERITFEYVMLDHVNDSKEDAHRLVKL 313

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIPAKINLIPFN WPG  Y  S    I  F++ I  +GY+SPIR PRG DI+AACGQL
Sbjct: 314 IEGIPAKINLIPFNEWPGSPYQRSSNNRIHAFADIIHDAGYASPIRKPRGEDIMAACGQL 373

Query: 366 KSLSKRIPKVPRQEMQITG 384
           KS ++R  K  +Q     G
Sbjct: 374 KSATERARKSRKQIEAEAG 392


>gi|316931629|ref|YP_004106611.1| radical SAM protein [Rhodopseudomonas palustris DX-1]
 gi|315599343|gb|ADU41878.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris DX-1]
          Length = 399

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 227/377 (60%), Positives = 283/377 (75%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R +L + L +IG+     +MR  Q+W W+YVRG RDF  M+++S+E+R  L 
Sbjct: 23  KPSLIGLSRAQLCDRLGEIGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRATLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGC 124
           +H ++  PE+V E+IS DGTRKWLLR P+   G    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 83  EHVTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 142

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ+LVRNLTA EI+ QV++AR  L D+   E       P+  R I+NIVM
Sbjct: 143 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWIDRET------PNGNRLITNIVM 196

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I SD+ G+  S+RRITLSTSG VPNI R G+EIGVMLAISLH
Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 256

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+ND+  DA  L++
Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDTIDDARKLVQ 316

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG +Y CSD   I  FSE I  +GYSSP+RTPRG DILAACGQ
Sbjct: 317 LLKGIPAKINLIPFNPWPGSKYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 376

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    R  ++
Sbjct: 377 LKSETEKLSVRERDALR 393


>gi|148251858|ref|YP_001236443.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
           [Bradyrhizobium sp. BTAi1]
 gi|205829672|sp|A5E8P3|RLMN_BRASB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146404031|gb|ABQ32537.1| 23S rRNA m(2)A-2503 methyltransferase [Bradyrhizobium sp. BTAi1]
          Length = 403

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 229/377 (60%), Positives = 279/377 (74%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R EL   L  +G+P+R  +MR  Q+W WIY RG R F  MS +S++ R  L 
Sbjct: 27  KPSLIGLSRAELAARLGDVGVPERQQKMRVQQLWHWIYFRGARSFDEMSSVSKDTRTALA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + F++  PE+V E+IS DGTRKWLLR P+   +    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 87  ERFTVDRPEVVAEQISNDGTRKWLLRLPSGDDLQKAHEVECVYIPETDRGTLCVSSQVGC 146

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ+LVRNLTA EI+ QV++AR  L D+   E       P   R I+NIVM
Sbjct: 147 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWADRET------PHGNRLITNIVM 200

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I SD+ G+  S+RRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 201 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRAGEEIGVMLAISLH 260

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYP+  L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L+K
Sbjct: 261 AVRDELRDELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARLLVK 320

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD + I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 321 LLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 380

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    RQ ++
Sbjct: 381 LKSETEKLSARERQALR 397


>gi|158422376|ref|YP_001523668.1| hypothetical protein AZC_0752 [Azorhizobium caulinodans ORS 571]
 gi|205829661|sp|A8IQ73|RLMN_AZOC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|158329265|dbj|BAF86750.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 406

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 221/372 (59%), Positives = 287/372 (77%), Gaps = 2/372 (0%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            SL G+ RE+L  AL  IG+P+R  +MR +Q+W WIY+RG  DF  M+++S+ +R  L +
Sbjct: 23  PSLAGLDREKLGLALAAIGVPERERKMRVNQLWHWIYLRGATDFAEMTNVSKTLRTQLAE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQVGCS 125
           H+S+  PEIV E++S DGTRKWLLR PA   G  P E+E VYIPE+ RGTLCVSSQVGC+
Sbjct: 83  HYSLARPEIVVEQVSQDGTRKWLLRLPAETPGERPHEVEAVYIPERDRGTLCVSSQVGCT 142

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184
           L C+FC+TGTQ+LVRNLTA EI+ QVL+AR  LGD+PG E   G  +P+ G + ++NIV 
Sbjct: 143 LNCAFCHTGTQRLVRNLTAAEIVAQVLVARDRLGDYPGRERAVGPGLPTEGDRLVTNIVF 202

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL  +D+V +++ I +D  GL   KRRIT+STSG VP I ++G E+G MLAISLH
Sbjct: 203 MGMGEPLYAYDSVAEAIEILADGDGLGLGKRRITVSTSGVVPEIEKLGREVGPMLAISLH 262

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +DLR++LVPIN+KYP+  L++ACR YP  SNA+RITFEYVMLKG+NDSP DA  L+K
Sbjct: 263 AVRDDLRDVLVPINKKYPIAELMEACRTYPAASNAKRITFEYVMLKGVNDSPADARALVK 322

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+G+PAKINLIPFNPWPG +Y CSD + I  FS+ + R+GY+SP+RTPRG DILAACGQ
Sbjct: 323 LLEGVPAKINLIPFNPWPGTKYECSDWETIEKFSDIVFRAGYASPVRTPRGRDILAACGQ 382

Query: 365 LKSLSKRIPKVP 376
           LKS ++++    
Sbjct: 383 LKSETEKLSARE 394


>gi|298293307|ref|YP_003695246.1| radical SAM enzyme, Cfr family [Starkeya novella DSM 506]
 gi|296929818|gb|ADH90627.1| radical SAM enzyme, Cfr family [Starkeya novella DSM 506]
          Length = 409

 Score =  494 bits (1272), Expect = e-138,   Method: Composition-based stats.
 Identities = 216/373 (57%), Positives = 283/373 (75%), Gaps = 2/373 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + SL G+ R  L EAL +IG+ +R  RMR +Q+W WIY+RG+  F  M+++ + +R  L 
Sbjct: 25  RRSLAGLDRAGLAEALAEIGVSEREQRMRVAQLWHWIYLRGVTSFDEMTNVGKGLRAKLE 84

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQVGC 124
           + F++  PE+V E++S DGTRKWLLR P    G  P ++E VYIPE  RGTLCVSSQVGC
Sbjct: 85  EAFTLARPEVVVEQVSNDGTRKWLLRLPPDIAGDKPHDVEMVYIPESDRGTLCVSSQVGC 144

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIV 183
           +L CSFC+TGTQ+LVRNLTA EI+ QV++AR  LGD+PG E   G  +P+ G + ++NIV
Sbjct: 145 TLNCSFCHTGTQRLVRNLTAAEIVAQVMVARDRLGDYPGQERAVGPGLPTEGDRLVTNIV 204

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL  +D+V +++ + +D  GL   KRRIT+STSG VP I ++G E+G MLAISL
Sbjct: 205 FMGMGEPLYAYDSVARAIEVLADGEGLGIGKRRITVSTSGVVPEIEKLGREVGPMLAISL 264

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV ++LR++LVPIN+KYPL+ L+DACR YP  SNA+RITFEYVMLKG+NDSP DA  L+
Sbjct: 265 HAVRDELRDVLVPINKKYPLKDLLDACRTYPAASNAKRITFEYVMLKGVNDSPADAKALV 324

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L GIPAKINLIPFNPWPG +Y CSD + I  FS+ + R+GYSSP+RTPRG DILAACG
Sbjct: 325 RLLAGIPAKINLIPFNPWPGTKYECSDWETIERFSDIVFRAGYSSPVRTPRGRDILAACG 384

Query: 364 QLKSLSKRIPKVP 376
           QLKS ++++    
Sbjct: 385 QLKSETEKLSARE 397


>gi|119385232|ref|YP_916288.1| radical SAM protein [Paracoccus denitrificans PD1222]
 gi|205829795|sp|A1B4Z8|RLMN_PARDP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|119374999|gb|ABL70592.1| 23S rRNA m(2)A-2503 methyltransferase [Paracoccus denitrificans
           PD1222]
          Length = 391

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 206/369 (55%), Positives = 275/369 (74%), Gaps = 10/369 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+G+ RE+L EAL++ G P+R  RMR  QIW+WIY  G+RDF  M++++++ R LL +
Sbjct: 23  RNLVGLTREQLHEALIQAGTPERQARMRVGQIWQWIYHWGVRDFAQMTNLAKDYRALLAE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +F I  PEIV  +IS DGTRK+LLR     I G  E+ETVYIPE++RGTLC+SSQVGC+L
Sbjct: 83  NFEIALPEIVTRQISADGTRKYLLR-----ISGGHEVETVYIPEENRGTLCISSQVGCTL 137

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P              R +SN+V+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIVGQVMVARDDLGEWPKP-----GAPKDETRLVSNVVLMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NFDNV+ ++ +  D  G+S S+RRITLSTSG VP IA+  EEIG +LA+S HA 
Sbjct: 193 MGEPLYNFDNVRDAMKVVMDGEGISLSRRRITLSTSGIVPEIAKTAEEIGCLLAVSFHAT 252

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +++ R+ LVP+NRK+ +E L++A R YP LSN+ RITFEYVML G+NDS  DA  L++++
Sbjct: 253 TDETRDKLVPVNRKWNIETLLNALREYPRLSNSERITFEYVMLDGVNDSDEDARRLVRLI 312

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +GIPAK+NLIPFN WPG  Y  S  + I  F++ + ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 313 RGIPAKVNLIPFNEWPGSPYRRSGWERIEAFADIVHKAGYASPIRTPRGEDIMAACGQLK 372

Query: 367 SLSKRIPKV 375
           S ++R  K 
Sbjct: 373 SATERGRKT 381


>gi|163738104|ref|ZP_02145520.1| hypothetical protein RGBS107_06819 [Phaeobacter gallaeciensis
           BS107]
 gi|161388720|gb|EDQ13073.1| hypothetical protein RGBS107_06819 [Phaeobacter gallaeciensis
           BS107]
          Length = 394

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 203/379 (53%), Positives = 273/379 (72%), Gaps = 10/379 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R++L E L+  G P++  +MR  QIW+WIY  G RDF  M+++++  R  L+
Sbjct: 23  KINLVGLTRDQLRETLIAHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRADLD 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 83  EHFEIATPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ Q+++AR  L ++P              R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAAEIVGQIMMARDDLDEWPVP-----GAPKDETRLLSNIVLM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG +LA+S HA
Sbjct: 193 GMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAVSFHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ LVPIN+++ +E L++A R YP L+N+ RITFEYVML G+NDS  DA  L+++
Sbjct: 253 TTDEVRDKLVPINKRWNIEALLEALRAYPRLTNSERITFEYVMLNGVNDSDEDAHRLVEL 312

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAK+NLIPFN WPG  Y  S    I  F+  I ++GY+SPIRTPRG DILAACGQL
Sbjct: 313 IKGIPAKVNLIPFNEWPGSPYTRSSNNRIHAFANIIYQAGYASPIRTPRGEDILAACGQL 372

Query: 366 KSLSKRIPKVPRQEMQITG 384
           KS ++R  K  +Q     G
Sbjct: 373 KSATERARKSRKQIEAEAG 391


>gi|90421563|ref|YP_529933.1| hypothetical protein RPC_0035 [Rhodopseudomonas palustris BisB18]
 gi|122995691|sp|Q21DC2|RLMN_RHOPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|90103577|gb|ABD85614.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 399

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 228/377 (60%), Positives = 280/377 (74%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + SLIG+ R EL EAL  IG+     +MR  Q+W W+Y RG+++F  M+ IS+E+R  L 
Sbjct: 23  RPSLIGLSRAELAEALGGIGVAASQRKMRAQQLWHWMYFRGVQEFAEMTSISKEMRSQLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGP-VEIETVYIPEKSRGTLCVSSQVGC 124
           +HF++  PE+V E+IS DGTRKWLLR P+   G    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 83  EHFTVARPEVVAEQISNDGTRKWLLRLPSGVSGEKAHEVECVYIPETDRGTLCVSSQVGC 142

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQKLVRNLTA EI+ QV++AR  L D+   E       P+  R ++N+VM
Sbjct: 143 TLNCSFCHTGTQKLVRNLTAGEIVGQVMVARDRLNDWADRET------PNGNRLVTNVVM 196

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I SD+ G+  S+RR+TLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRVTLSTSGVVPNIVRAGEEIGVMLAISLH 256

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYPL  L+ ACR YPG SNARRITFEYVMLK +NDS  DA  L+K
Sbjct: 257 AVRDELRDELVPLNRKYPLAELLQACRDYPGASNARRITFEYVMLKDVNDSLDDAKLLVK 316

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L GIPAKINLIPFNPWPG  Y CSD   I  FSE I  +GYSSP+RTPRG DILAACGQ
Sbjct: 317 LLSGIPAKINLIPFNPWPGTAYKCSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 376

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    R+ ++
Sbjct: 377 LKSETEKLTAREREALR 393


>gi|146337410|ref|YP_001202458.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
           [Bradyrhizobium sp. ORS278]
 gi|205829673|sp|A4YJY2|RLMN_BRASO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146190216|emb|CAL74208.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
           [Bradyrhizobium sp. ORS278]
          Length = 403

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 227/377 (60%), Positives = 280/377 (74%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R EL   L  IG+P+R  +MR  Q+W W+Y RG R F  M+ +S++ R+ L 
Sbjct: 27  KPSLIGLSRAELAARLGDIGVPERQQKMRVQQLWHWLYFRGARSFDEMTSVSKDTRNGLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + F++  PE+V E+IS DGTRKWLLR P+   +    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 87  ERFTVDRPEVVAEQISNDGTRKWLLRLPSGDDLQKAHEVECVYIPETDRGTLCVSSQVGC 146

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ+LVRNLTA EI+ Q+++AR  L D+   E       P   R I+NIVM
Sbjct: 147 TLNCAFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRET------PHGNRLITNIVM 200

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+ V+ +L I SD+ G+  S+RRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 201 MGMGEPLYNFEAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRAGEEIGVMLAISLH 260

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LRN LVP+NRKYP+  L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L+K
Sbjct: 261 AVRDELRNELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARLLVK 320

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD + I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 321 LLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 380

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    RQ ++
Sbjct: 381 LKSETEKLSARERQALR 397


>gi|323136337|ref|ZP_08071419.1| radical SAM enzyme, Cfr family [Methylocystis sp. ATCC 49242]
 gi|322398411|gb|EFY00931.1| radical SAM enzyme, Cfr family [Methylocystis sp. ATCC 49242]
          Length = 392

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 226/376 (60%), Positives = 279/376 (74%), Gaps = 3/376 (0%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SL GM R E+ + L   G+P+R +RMR SQ+W WIY RG RDF  M +IS+ +R  L
Sbjct: 13  EKPSLAGMTRAEIADTLRAFGLPEREIRMRVSQLWHWIYFRGARDFGEMLNISKSLRLTL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           +  F + +PEIV+E++S DGTRKWLLR  P        E+E VYIPE  RGTLCVSSQVG
Sbjct: 73  DGAFGLRHPEIVEEQVSVDGTRKWLLRLAPVDAQDKGAEVECVYIPESDRGTLCVSSQVG 132

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISN 181
           C+L CSFC+TGTQKLVRNLT+ EI+ Q+L+AR  LGDFP  E     ++PS    R +SN
Sbjct: 133 CTLNCSFCHTGTQKLVRNLTSAEIIGQLLVARQRLGDFPDRERPTDGLVPSGEGVRAVSN 192

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N DNV  ++ + +D  GLS SKRRIT+STSG VP I R+G E G  LAI
Sbjct: 193 IVFMGMGEPLYNIDNVMAAIEVMADGDGLSLSKRRITVSTSGVVPQIERLGAECGPALAI 252

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV +DLRN LVP+NRKYP++ L+ ACR YPG SNARRITFEYVMLKG+NDSP +A  
Sbjct: 253 SLHAVRDDLRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSPAEARE 312

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++LKG+PAKINLIPFNPWPG  Y CSD + I  FS+ +  +GY+SP+RTPRG DILAA
Sbjct: 313 LVRLLKGVPAKINLIPFNPWPGAPYECSDWETIERFSDIVFNAGYASPVRTPRGRDILAA 372

Query: 362 CGQLKSLSKRIPKVPR 377
           CGQLKS ++++    R
Sbjct: 373 CGQLKSETEKLRARAR 388


>gi|163742501|ref|ZP_02149887.1| radical SAM enzyme, Cfr family protein [Phaeobacter gallaeciensis
           2.10]
 gi|161384086|gb|EDQ08469.1| radical SAM enzyme, Cfr family protein [Phaeobacter gallaeciensis
           2.10]
          Length = 394

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/379 (53%), Positives = 273/379 (72%), Gaps = 10/379 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R++L E L+  G P++  +MR  QIW+WIY  G RDF  M+++++  R  L+
Sbjct: 23  KINLVGLTRDQLRETLIAHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRADLD 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  PE++ +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 83  EHFEIATPEVMSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ Q+++AR  L ++P              R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAAEIVGQIMMARDDLDEWPVP-----GAPKDETRLLSNIVLM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG +LA+S HA
Sbjct: 193 GMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAVSFHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ LVPIN+++ +E L++A R YP L+N+ RITFEYVML G+NDS  DA  L+++
Sbjct: 253 TTDEVRDKLVPINKRWNIEALLEALRAYPRLTNSERITFEYVMLNGVNDSDEDAHRLVEL 312

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAK+NLIPFN WPG  Y  S    I  F+  I ++GY+SPIRTPRG DILAACGQL
Sbjct: 313 IKGIPAKVNLIPFNEWPGSPYTRSSNNRIHAFANIIYQAGYASPIRTPRGEDILAACGQL 372

Query: 366 KSLSKRIPKVPRQEMQITG 384
           KS ++R  K  +Q     G
Sbjct: 373 KSATERARKSRKQIEAEAG 391


>gi|149201312|ref|ZP_01878287.1| hypothetical protein RTM1035_16842 [Roseovarius sp. TM1035]
 gi|149145645|gb|EDM33671.1| hypothetical protein RTM1035_16842 [Roseovarius sp. TM1035]
          Length = 392

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 206/378 (54%), Positives = 274/378 (72%), Gaps = 9/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+G+ R+ L E L+  G P++  +MR +QIW+WIY  G+RDF  M+++++  R  L +
Sbjct: 23  INLVGLTRDALREVLIAHGTPEKQAKMRVNQIWQWIYQWGVRDFHAMTNLAKAYRAQLAE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +F +  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+L
Sbjct: 83  NFVVTIPEVVSKQVSADGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTL 137

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QV+LAR  L ++P   +  G       R ISNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPKPGEPAG----ERPRLISNIVLMG 193

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NFDNV+ ++ IA D  G+S S+RRITLSTSG VP IA+  EEIG +LA+S HA 
Sbjct: 194 MGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAEEIGCLLAVSFHAT 253

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++++R+ LVPIN+++ +  L+D  R YP LSN+ RITFEYVMLKG+NDS  DA  L++++
Sbjct: 254 TDEVRDTLVPINKRWNIATLLDTLREYPRLSNSERITFEYVMLKGVNDSDADARRLVQLI 313

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KGIPAKINLIPFN WPG  Y  SD + I  F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 314 KGIPAKINLIPFNEWPGSPYQRSDWERIERFADIIYKAGYASPIRTPRGEDIMAACGQLK 373

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K   Q     G
Sbjct: 374 SATERSRKSRAQIEAEAG 391


>gi|126727284|ref|ZP_01743120.1| radical SAM enzyme, Cfr family protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126703493|gb|EBA02590.1| radical SAM enzyme, Cfr family protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 392

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 205/379 (54%), Positives = 271/379 (71%), Gaps = 9/379 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R+ + +AL+  G+P++  +MRT QIW WIY +G+R F  M+++S+  R  L 
Sbjct: 22  KINLVGLTRDGMRDALIAAGLPEKQGKMRTGQIWAWIYEKGVRTFDVMTNLSKGYRAELA 81

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V  +IS DGTRK+L+R     I G  E+E VYIPEK RGTLC+SSQVGC+
Sbjct: 82  ESFEIAVPEVVTRQISEDGTRKYLVR-----IAGGHEVEVVYIPEKDRGTLCISSQVGCT 136

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P              R +SNIV+M
Sbjct: 137 LTCSFCHTGTQKLVRNLTAGEIIGQVMIARDDLGEWPEL----AQSPNVEARLLSNIVLM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF++V+ ++ IA D  G+S S+RRITLSTSG VP IAR  +EIG MLA+S HA
Sbjct: 193 GMGEPLYNFESVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTADEIGCMLAVSFHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++D+R+ LVPIN+K+ +E L+DA R YP  SN+ RITFEYVML G+NDS  DA  L+++
Sbjct: 253 TTDDVRDKLVPINKKWNIEALLDALRAYPKASNSERITFEYVMLNGVNDSDEDAHRLVEL 312

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAKINLIPFN WPG  Y  S    I  F++ +  +GYSSP+R PRG DI+AACGQL
Sbjct: 313 IKGIPAKINLIPFNEWPGAPYQRSSNNRIRAFADIVFNAGYSSPVRRPRGEDIMAACGQL 372

Query: 366 KSLSKRIPKVPRQEMQITG 384
           KS ++R  K  ++     G
Sbjct: 373 KSETERARKSRKEIAAEAG 391


>gi|89052760|ref|YP_508211.1| hypothetical protein Jann_0269 [Jannaschia sp. CCS1]
 gi|88862309|gb|ABD53186.1| 23S rRNA m(2)A-2503 methyltransferase [Jannaschia sp. CCS1]
          Length = 410

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 205/378 (54%), Positives = 274/378 (72%), Gaps = 9/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +LIG+ R+ L  AL++ G P++  +MRT QIW+W+Y +G+RDF  M+++S++ R +L +
Sbjct: 41  VNLIGLTRDGLRAALIEAGTPEKQAKMRTGQIWQWLYQKGVRDFASMTNLSKDYRAMLAE 100

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F    PE+V  ++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+L
Sbjct: 101 TFVADVPEVVSRQVSADGTRKYLVR-----IAGGHEVEVVYIPEVDRGTLCISSQVGCTL 155

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QV+LAR  L ++       G    +  R +SNIV+MG
Sbjct: 156 TCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLDEWV----PTGEGSDAKPRLVSNIVLMG 211

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IA+  +EIG  LA+S HA 
Sbjct: 212 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAQEIGCQLAVSFHAT 271

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++D+R+ LVPIN+++P+  L+DA R YP +SN+ RITFEYVMLK +NDS  DA  L++++
Sbjct: 272 TDDVRDKLVPINKRWPIADLLDALRDYPRVSNSERITFEYVMLKDVNDSDADARRLVQLI 331

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KGIPAKINLIPFN WPG  Y  SD   I  F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 332 KGIPAKINLIPFNEWPGAPYERSDWARIEAFADIIYKAGYASPIRTPRGEDIMAACGQLK 391

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K  +Q     G
Sbjct: 392 SATERARKSRKQIEAEAG 409


>gi|294675798|ref|YP_003576413.1| radical SAM family protein [Rhodobacter capsulatus SB 1003]
 gi|294474618|gb|ADE84006.1| radical SAM family protein [Rhodobacter capsulatus SB 1003]
          Length = 393

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 205/379 (54%), Positives = 282/379 (74%), Gaps = 10/379 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R++L +AL+  G P++  +MR  Q+W+WIY  G+RDF  M++++++ R LL+
Sbjct: 24  KVNLVGLTRDQLRDALIAAGTPEKQAKMRVGQVWQWIYHWGVRDFGAMTNLAKDYRALLD 83

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  PE+V  ++S DGTRK+LLR     I G  E+E VYIPE++RGTLC+SSQVGC+
Sbjct: 84  RHFEIALPEVVTCQVSMDGTRKYLLR-----IAGGHEVEAVYIPEENRGTLCISSQVGCT 138

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P   +          R ISN+V+M
Sbjct: 139 LTCSFCHTGTQKLVRNLTAGEIVGQVMVARDDLGEWPVPGEP-----KDETRLISNVVLM 193

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV+ ++ +  D+ GL+ S+RRITLSTSG VP IAR  EEIG +LAIS HA
Sbjct: 194 GMGEPLYNFENVRDAMQVVMDNEGLTLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 253

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +R+ LVP+N+K+ ++ L+DA R YP LSN+ RITFEYVMLKG+NDS  DA  L+++
Sbjct: 254 TTDAVRDKLVPVNKKWNIKTLLDALRDYPRLSNSERITFEYVMLKGVNDSDDDARRLVRL 313

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIPAKINLIPFN WPG  Y  SD + I  F++ + ++GY++PIRTPRG DI+AACGQL
Sbjct: 314 IQGIPAKINLIPFNEWPGSPYKRSDWERIEAFADIVYKAGYAAPIRTPRGEDIMAACGQL 373

Query: 366 KSLSKRIPKVPRQEMQITG 384
           KS ++R  K   +    TG
Sbjct: 374 KSATERARKSKAEIDAETG 392


>gi|255261946|ref|ZP_05341288.1| radical SAM enzyme, Cfr family [Thalassiobium sp. R2A62]
 gi|255104281|gb|EET46955.1| radical SAM enzyme, Cfr family [Thalassiobium sp. R2A62]
          Length = 395

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 200/378 (52%), Positives = 272/378 (71%), Gaps = 10/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+G+ R+ + + L++ G P++  +MR  QIW+WIYV+G+R F  M+++S++ R  L +
Sbjct: 23  INLVGLRRDAMRDVLIEHGTPEKQAKMRVGQIWQWIYVKGLRSFDEMTNLSKDYRAKLAE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+L
Sbjct: 83  NFVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCTL 137

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLT  EI+ QV++AR  LG++P     E        R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTPAEIIGQVMVARDDLGEWP-----EPGTPNDEARLLSNIVLMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+ V+ ++ IA D  G+S S+RRITLSTSG VP IA+  EEIG MLA+S HA 
Sbjct: 193 MGEPLYNFEGVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAEEIGCMLAVSFHAT 252

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++D+R+ LVPIN+++ +  L+DA R YP +SN+ RITFEYVML G+ND+  DA  L++++
Sbjct: 253 TDDVRDKLVPINKRWNIAELLDALRAYPKVSNSERITFEYVMLDGVNDTDEDAHRLVELI 312

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KGIPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR PRG DI+AACGQLK
Sbjct: 313 KGIPAKINLIPFNEWPGAPYKRSSNNRIRAFAHIIYKAGYASPIRKPRGEDIMAACGQLK 372

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K  +Q     G
Sbjct: 373 SATERARKSRKQIEAEAG 390


>gi|154244355|ref|YP_001415313.1| radical SAM protein [Xanthobacter autotrophicus Py2]
 gi|205829935|sp|A7ICB3|RLMN_XANP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|154158440|gb|ABS65656.1| radical SAM enzyme, Cfr family [Xanthobacter autotrophicus Py2]
          Length = 414

 Score =  491 bits (1264), Expect = e-137,   Method: Composition-based stats.
 Identities = 223/377 (59%), Positives = 285/377 (75%), Gaps = 2/377 (0%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            SLIG+ R++L  AL  IG+     RMR +Q+W WIY+RG  DF  M+++S+ +R  L  
Sbjct: 31  PSLIGLDRDKLGAALDAIGVRGSDRRMRVNQLWHWIYLRGATDFAEMTNVSKHLRADLAA 90

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQVGCS 125
            +S+  PEIV E++S DGTRKWLLRFPA   G  P +IETVYIPE  RGTLCVSSQVGC+
Sbjct: 91  AYSLARPEIVMEQVSQDGTRKWLLRFPADHPGERPHDIETVYIPESDRGTLCVSSQVGCT 150

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184
           L CSFC+TGTQ+LVRNLTA EI+ QV++AR  LGD+PG +   G  +P+ G + ++NIV 
Sbjct: 151 LNCSFCHTGTQRLVRNLTAAEIVAQVMVARDRLGDYPGRDRATGPGLPTEGDRLVTNIVF 210

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL  +D+VK+++   SD  GL   KRRIT+STSG VP I R+G E+G MLAISLH
Sbjct: 211 MGMGEPLYAYDSVKEAIETLSDGDGLGLGKRRITVSTSGVVPEIERLGAEVGPMLAISLH 270

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV + LR+ LVPIN+KYP+  L++ACR YP  SNA+RITFEYVMLKG+NDSP DA  L+K
Sbjct: 271 AVRDKLRDELVPINKKYPIAELMEACRTYPAASNAKRITFEYVMLKGVNDSPADARALVK 330

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+G+PAKINLIPFNPWPG +Y CSD + I  FS+ + R+GY+SP+RTPRG DILAACGQ
Sbjct: 331 LLEGVPAKINLIPFNPWPGTQYECSDWETIERFSDIVFRAGYASPVRTPRGRDILAACGQ 390

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS S+++    R  ++
Sbjct: 391 LKSESEKLSARERLALR 407


>gi|188580846|ref|YP_001924291.1| radical SAM enzyme, Cfr family [Methylobacterium populi BJ001]
 gi|205829790|sp|B1ZG98|RLMN_METPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|179344344|gb|ACB79756.1| radical SAM enzyme, Cfr family [Methylobacterium populi BJ001]
          Length = 425

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 220/381 (57%), Positives = 285/381 (74%), Gaps = 5/381 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SL+G+ RE L++AL+ IG+P+R  RMR SQIW W+YVRG R+F  M+++ + ++  L
Sbjct: 34  RKASLVGLTREGLKQALIGIGVPERETRMRVSQIWHWLYVRGAREFSEMTNVGKGLKAQL 93

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLCVSSQ 121
            +HF++  PE+V E++S DGTRKWLLR             EIE VYIP   RGTLCVSSQ
Sbjct: 94  AEHFTLDRPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+LTCSFC+TGTQ+LVRNL+  EI+ Q+++AR  LGDF G   + G     VGR ++N
Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVSQLVVARDALGDFTGQ--MPGKDGGEVGRLVTN 211

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N D V  ++++ SD  GL+ S+RRIT+STSG VP I R+G E   MLAI
Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV ++LR+ LVP+NRKYP+  L++ACR+YPGLSNARRITFEYVMLKG+NDS  DA  
Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLEACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++LKGIPAKINLIPFNPWPG +Y CSD + I  FSE +  +GY+SP+RTPRG DILAA
Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEFVFNAGYASPVRTPRGRDILAA 391

Query: 362 CGQLKSLSKRIPKVPRQEMQI 382
           CGQLKS ++++    R  ++ 
Sbjct: 392 CGQLKSETEKLRARARMMLEE 412


>gi|205829857|sp|Q28VS6|RLMN_JANSC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 392

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 205/378 (54%), Positives = 274/378 (72%), Gaps = 9/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +LIG+ R+ L  AL++ G P++  +MRT QIW+W+Y +G+RDF  M+++S++ R +L +
Sbjct: 23  VNLIGLTRDGLRAALIEAGTPEKQAKMRTGQIWQWLYQKGVRDFASMTNLSKDYRAMLAE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F    PE+V  ++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+L
Sbjct: 83  TFVADVPEVVSRQVSADGTRKYLVR-----IAGGHEVEVVYIPEVDRGTLCISSQVGCTL 137

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QV+LAR  L ++       G    +  R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLDEWV----PTGEGSDAKPRLVSNIVLMG 193

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IA+  +EIG  LA+S HA 
Sbjct: 194 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAQEIGCQLAVSFHAT 253

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++D+R+ LVPIN+++P+  L+DA R YP +SN+ RITFEYVMLK +NDS  DA  L++++
Sbjct: 254 TDDVRDKLVPINKRWPIADLLDALRDYPRVSNSERITFEYVMLKDVNDSDADARRLVQLI 313

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KGIPAKINLIPFN WPG  Y  SD   I  F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 314 KGIPAKINLIPFNEWPGAPYERSDWARIEAFADIIYKAGYASPIRTPRGEDIMAACGQLK 373

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K  +Q     G
Sbjct: 374 SATERARKSRKQIEAEAG 391


>gi|126729978|ref|ZP_01745790.1| hypothetical protein SSE37_16408 [Sagittula stellata E-37]
 gi|126709358|gb|EBA08412.1| hypothetical protein SSE37_16408 [Sagittula stellata E-37]
          Length = 394

 Score =  490 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 208/373 (55%), Positives = 278/373 (74%), Gaps = 8/373 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R  L +ALL +G P++ V+MR +Q+W+W+Y  G+RDF  M++++++ R  L+
Sbjct: 22  KINLVGLTRAGLRDALLAMGTPEKQVKMRVNQVWQWVYFWGVRDFDSMTNLAKDYRAKLD 81

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F I  PEIV +++S DGTRK+L+R     I G  E+ETVYIPE+ RGTLCVSSQVGC+
Sbjct: 82  ATFEIALPEIVSKQVSADGTRKYLVR-----IAGGHEVETVYIPEEDRGTLCVSSQVGCT 136

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ Q++LAR  LG++P      G   P   R +SNIV+M
Sbjct: 137 LTCSFCHTGTQKLVRNLTAGEIVGQIMLARDDLGEWPEPGTGTGEQGP---RLLSNIVLM 193

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ IA D  GLS S+RRITLSTSG VP IA+  EEIG ++A+S HA
Sbjct: 194 GMGEPLYNFDNVRDAMKIAMDHEGLSMSRRRITLSTSGVVPEIAKCAEEIGCLMAVSFHA 253

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN LVPIN+++ +  L+DA R YP LSN+ RITFEYVMLK +NDS  DA  L+++
Sbjct: 254 TTDEVRNKLVPINKRWNIATLLDALREYPRLSNSERITFEYVMLKDVNDSDEDARRLVRL 313

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           + GIPAKINLIPFN WPG  Y  SD   I  F++ + ++GY+SPIRTPRG DI+AACGQL
Sbjct: 314 IAGIPAKINLIPFNEWPGSPYERSDWSRIERFADIVYKAGYASPIRTPRGEDIMAACGQL 373

Query: 366 KSLSKRIPKVPRQ 378
           KS ++R  K  ++
Sbjct: 374 KSATERSRKSRKE 386


>gi|91975189|ref|YP_567848.1| hypothetical protein RPD_0709 [Rhodopseudomonas palustris BisB5]
 gi|123763075|sp|Q13D92|RLMN_RHOPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|91681645|gb|ABE37947.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 398

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 227/377 (60%), Positives = 282/377 (74%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R EL E L  IG+     +MR  Q+W W+Y+RG RDF  M+++S+E+R  L+
Sbjct: 22  KPSLIGLSRAELAERLGHIGVAPAQRKMRAQQLWNWMYLRGARDFSEMTNVSKEMRAQLS 81

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            HF++  PE+V E+IS DGTRKWLLR P+   +    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 82  DHFTVDRPEVVAEQISNDGTRKWLLRLPSGDDVQKAHEVECVYIPETDRGTLCVSSQVGC 141

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ QV++AR  L D+   E       P+  R ++NIVM
Sbjct: 142 TLNCSFCHTGTQRLVRNLTAGEIIGQVMVARDRLNDWVDRET------PNGNRLVTNIVM 195

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+ V+ +L I +D+ G+  S+RR+TLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 196 MGMGEPLYNFEAVRDALLIVTDNEGIGISRRRVTLSTSGVVPNIIRTGEEIGVMLAISLH 255

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L++
Sbjct: 256 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARRLVQ 315

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD   I  FSE I  +GYSSP+RTPRG DILAACGQ
Sbjct: 316 LLKGIPAKINLIPFNPWPGSAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 375

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    R  ++
Sbjct: 376 LKSETEKLSVRERDALR 392


>gi|84683986|ref|ZP_01011888.1| radical SAM superfamily protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667739|gb|EAQ14207.1| radical SAM superfamily protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 394

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 211/382 (55%), Positives = 275/382 (71%), Gaps = 9/382 (2%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            L K +L+G+ R+ L +AL+  G P++  +MR  Q+W+WIY +G+RDF  M+++S++ R 
Sbjct: 21  TLGKPNLVGLTRDGLRDALIAAGTPEKQAKMRVGQVWQWIYQKGVRDFADMTNLSKDYRA 80

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LL+QHF I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLCVSSQV
Sbjct: 81  LLDQHFEIRVPELVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQV 135

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+LTCSFC+TGTQKLVRNLTA EI+ Q+++AR  L D+       G  +    R +SNI
Sbjct: 136 GCTLTCSFCHTGTQKLVRNLTAGEIVGQIMMARDDLEDWVPA----GKGMGERPRLVSNI 191

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V+MGMGEPL NFD V+ ++ IA D  G+S S+RRITLSTSG VP IAR G EIG MLAIS
Sbjct: 192 VLMGMGEPLYNFDAVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIARAGAEIGCMLAIS 251

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
            HA  ++ R+ LVPIN+K+ +E L+ A + YP LSN+ RITFEYVML G+NDS  DA  L
Sbjct: 252 FHATDDETRDKLVPINKKWNIEKLLAALKEYPKLSNSERITFEYVMLDGVNDSDEDARRL 311

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           IK+++GIPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIRTPRG DI+AAC
Sbjct: 312 IKLIEGIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRTPRGEDIMAAC 371

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQLKS ++R  K   +  +  G
Sbjct: 372 GQLKSETERARKSKAEIAREAG 393


>gi|84515768|ref|ZP_01003129.1| radical SAM superfamily protein [Loktanella vestfoldensis SKA53]
 gi|84510210|gb|EAQ06666.1| radical SAM superfamily protein [Loktanella vestfoldensis SKA53]
          Length = 392

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 206/378 (54%), Positives = 272/378 (71%), Gaps = 10/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+GM R+ + +AL+  G P++  +MR  QIW+W+Y  G+RDF  M++++++ R +L  
Sbjct: 24  PNLVGMTRDGMRDALIAAGTPEKQAKMRVGQIWQWVYHWGVRDFAKMTNLAKDYRAMLAD 83

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +F +  PE+V  ++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+L
Sbjct: 84  NFVVALPEVVTRQVSGDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTL 138

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QVL+AR  LG++P     +  V     R +SNIV+MG
Sbjct: 139 TCSFCHTGTQKLVRNLTAAEIIGQVLVARDDLGEWPVQGTPKDEV-----RLLSNIVLMG 193

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP IAR  +EIG  LAIS HA 
Sbjct: 194 MGEPLYNFENVRDAMKIAMDPDGIQLSRRRITLSTSGVVPEIARTAQEIGCQLAISFHAT 253

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++++R+ LVPIN+++PL  L+DA R YP +SN+ RITFEYVML G+NDS  DA  LIK++
Sbjct: 254 TDEVRDKLVPINKRWPLADLLDALRTYPKVSNSERITFEYVMLDGVNDSDADAHRLIKLI 313

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            GIPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 314 DGIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLK 373

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K   Q  Q  G
Sbjct: 374 SATERARKSKAQIAQEAG 391


>gi|312114859|ref|YP_004012455.1| radical SAM enzyme, Cfr family [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219988|gb|ADP71356.1| radical SAM enzyme, Cfr family [Rhodomicrobium vannielii ATCC
           17100]
          Length = 412

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/375 (60%), Positives = 285/375 (76%), Gaps = 2/375 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SL GM R EL  AL + G+P    +MR +Q+W W Y RG  DF  +++I++ +R  L+
Sbjct: 29  KPSLAGMTRPELMAALAEAGVPANQAKMRAAQLWNWTYARGATDFMALTNIAKSLRAELD 88

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             F++  PEI  E+IS DGTRKWLLR  P+     P EIETVYIPE  RGTLC+SSQVGC
Sbjct: 89  ARFTLARPEIAAEQISEDGTRKWLLRLAPSHPAERPPEIETVYIPEPDRGTLCISSQVGC 148

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI-EGMVIPSVGRKISNIV 183
           +L CSFC+TGTQ+LVRNLTA EI+ Q+L+AR  +GD+P  +   +   IP   RKI+NIV
Sbjct: 149 TLNCSFCHTGTQRLVRNLTAAEIVGQILVARDRVGDWPDADGPADRHGIPESERKITNIV 208

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NF+NVK ++ +A+D+  LSFSKRR+TLSTSG VP + R GEE+GVMLAISL
Sbjct: 209 LMGMGEPLYNFENVKAAVGLATDADALSFSKRRLTLSTSGVVPMMHRAGEEMGVMLAISL 268

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV +DLR+ LVPINRKYPL+ L+ ACR YPGLSNARR+TFEYVMLKG+NDS  +A  L+
Sbjct: 269 HAVRDDLRDELVPINRKYPLKELLAACRAYPGLSNARRMTFEYVMLKGVNDSVAEAKELV 328

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKGIP+KINLIPFNPWPG  Y CSD   I  F++ + R+GY+SPIRTPRG DI+AACG
Sbjct: 329 RLLKGIPSKINLIPFNPWPGTAYECSDWAQIERFADVVNRAGYASPIRTPRGRDIMAACG 388

Query: 364 QLKSLSKRIPKVPRQ 378
           QLKS S+++    R+
Sbjct: 389 QLKSASEKLRASARR 403


>gi|218529897|ref|YP_002420713.1| radical SAM enzyme, Cfr family [Methylobacterium chloromethanicum
           CM4]
 gi|218522200|gb|ACK82785.1| radical SAM enzyme, Cfr family [Methylobacterium chloromethanicum
           CM4]
          Length = 425

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 220/381 (57%), Positives = 283/381 (74%), Gaps = 5/381 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SL+G+ RE L++AL+ IG+P+R  RMR SQ+W WIYVRG R+F  M+++ + ++  L
Sbjct: 34  RKASLVGLTREGLKQALIGIGVPERETRMRVSQVWHWIYVRGAREFSEMTNVGKGLKAQL 93

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLCVSSQ 121
             HF++  PE+V E++S DGTRKWLLR             EIE VYIP   RGTLCVSSQ
Sbjct: 94  ADHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+LTCSFC+TGTQ+LVRNL+  EI+ Q+++AR  LGDF G    +    P  GR ++N
Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTGQMPGKDGGEP--GRLVTN 211

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N D V  ++++ SD  GL+ S+RRIT+STSG VP I R+G E   MLAI
Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV ++LR+ LVP+NRKYP+  L+DACR+YPGLSNARRITFEYVMLKG+NDS  DA  
Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++LKGIPAKINLIPFNPWPG +Y CSD + I  FSE +  +GY+SP+RTPRG DILAA
Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASPVRTPRGRDILAA 391

Query: 362 CGQLKSLSKRIPKVPRQEMQI 382
           CGQLKS ++++    R  ++ 
Sbjct: 392 CGQLKSETEKLRARARLMLEE 412


>gi|296446886|ref|ZP_06888822.1| radical SAM enzyme, Cfr family [Methylosinus trichosporium OB3b]
 gi|296255561|gb|EFH02652.1| radical SAM enzyme, Cfr family [Methylosinus trichosporium OB3b]
          Length = 386

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/379 (60%), Positives = 279/379 (73%), Gaps = 3/379 (0%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SL G  R EL EAL  I  P+R +RMR +Q+W WIY RG RDF  MS++S+ VR  L 
Sbjct: 8   KPSLAGATRAELAEALRAIDTPEREIRMRVAQLWHWIYFRGARDFADMSNVSKIVRGKLA 67

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + F +  PE+V E++S DGTRKWLLR  P        EIE VYIPE  RGTLCVSSQVGC
Sbjct: 68  ERFGLALPEVVAEQVSTDGTRKWLLRLDPVDAADKGAEIECVYIPESDRGTLCVSSQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNI 182
           +L CSFC+TGTQKLVRNL+  EI+ Q+L+AR  LGDFPG E     ++PS    R +SNI
Sbjct: 128 TLNCSFCHTGTQKLVRNLSTREIIAQLLVARMRLGDFPGLEPPTDGLVPSGPDVRAVSNI 187

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N + V+ ++ I SD  GLS SKRRIT+STSG VP I R+G E G MLAIS
Sbjct: 188 VFMGMGEPLYNLEQVENAIEILSDGDGLSLSKRRITVSTSGVVPQIERLGAECGPMLAIS 247

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHAV ++LRN LVP+N+KYP+  L+DACR YPG SNARRITFEYVMLKG+NDSP +A  L
Sbjct: 248 LHAVRDELRNELVPLNKKYPIRQLLDACRDYPGASNARRITFEYVMLKGVNDSPAEAREL 307

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +++LKGIPAKINLIPFNPWPG  Y CSD + I  FS+ +  +GY+SP+RTPRG DILAAC
Sbjct: 308 VRLLKGIPAKINLIPFNPWPGAPYECSDWETIERFSDIVFNAGYASPVRTPRGRDILAAC 367

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQLKS ++++    R  ++
Sbjct: 368 GQLKSETEKLRARARLAVE 386


>gi|23012331|ref|ZP_00052443.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum
           magnetotacticum MS-1]
          Length = 425

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 221/380 (58%), Positives = 284/380 (74%), Gaps = 5/380 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SL+G  RE L++AL+ IG+P+R  RMRTSQIW W+YVRG R+F  M+++ + ++  L
Sbjct: 34  RKASLVGQTREGLKQALIGIGVPEREARMRTSQIWHWLYVRGAREFSEMTNVGKGLKAQL 93

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLCVSSQ 121
            QHF++  PE+V E++S DGTRKWLLR             EIE VYIP   RGTLCVSSQ
Sbjct: 94  AQHFTLDRPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+LTCSFC+TGTQ+LVRNL+  EI+ Q+++AR  LGDF G   + G      GR ++N
Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVSQLVVARDALGDFTGQ--MPGKDGGEAGRLVTN 211

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N D V  ++++ SD  GL+ S+RRIT+STSG VP I R+G E   MLAI
Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDPEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV ++LR+ LVP+NRKYP+  L++ACR+YPGLSNARRITFEYVMLKG+NDS  DA  
Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLEACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++LKGIPAKINLIPFNPWPG +Y CSD + I  FSE +  +GY+SP+RTPRG DILAA
Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEFVFNAGYASPVRTPRGRDILAA 391

Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
           CGQLKS ++++    R  ++
Sbjct: 392 CGQLKSETEKLRARARMMLE 411


>gi|240138201|ref|YP_002962673.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens
           AM1]
 gi|254560761|ref|YP_003067856.1| Fe-S containing enzyme [Methylobacterium extorquens DM4]
 gi|240008170|gb|ACS39396.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens
           AM1]
 gi|254268039|emb|CAX23910.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens
           DM4]
          Length = 425

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 221/381 (58%), Positives = 283/381 (74%), Gaps = 5/381 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SL+G+ RE L++AL+ IG+P+R  RMR SQ+W WIYVRG R+F  M+++ + ++  L
Sbjct: 34  RKASLVGLTREGLKQALIGIGVPERETRMRVSQVWHWIYVRGAREFSEMTNVGKGLKAQL 93

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLCVSSQ 121
             HF++  PE+V E++S DGTRKWLLR             EIE VYIP   RGTLCVSSQ
Sbjct: 94  ADHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+LTCSFC+TGTQ+LVRNL+  EI+ Q+++AR  LGDF G    +    P  GR ++N
Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTGQMPGKDGGEP--GRLVTN 211

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N D V  ++++ SD  GL+ S+RRIT+STSG VP I R+G E   MLAI
Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV +DLR+ LVP+NRKYP+  L+DACR+YPGLSNARRITFEYVMLKG+NDS  DA  
Sbjct: 272 SLHAVRDDLRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++LKGIPAKINLIPFNPWPG +Y CSD + I  FSE +  +GY+SP+RTPRG DILAA
Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASPVRTPRGRDILAA 391

Query: 362 CGQLKSLSKRIPKVPRQEMQI 382
           CGQLKS ++++    R  ++ 
Sbjct: 392 CGQLKSETEKLRARARLMLEE 412


>gi|163851067|ref|YP_001639110.1| radical SAM protein [Methylobacterium extorquens PA1]
 gi|205829789|sp|A9W383|RLMN_METEP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|163662672|gb|ABY30039.1| radical SAM enzyme, Cfr family [Methylobacterium extorquens PA1]
          Length = 425

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 219/381 (57%), Positives = 283/381 (74%), Gaps = 5/381 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SL+G+ RE L++AL+ IG+P+R  RMR SQ+W WIYVRG R+F  M+++ + ++  L
Sbjct: 34  RKASLVGLTREGLKQALIGIGVPERETRMRVSQVWHWIYVRGAREFSEMTNVGKGLKAQL 93

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLCVSSQ 121
             HF++  PE+V E++S DGTRKWLLR             EIE VYIP   RGTLCVSSQ
Sbjct: 94  ADHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+LTCSFC+TGTQ+LVRNL+  EI+ Q+++AR  LGDF G    +    P  GR ++N
Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTGQMPGKDGGEP--GRLVTN 211

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N D V  ++++ SD  GL+ S+RRIT+STSG VP + R+G E   MLAI
Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQMERLGLEANAMLAI 271

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV ++LR+ LVP+NRKYP+  L+DACR+YPGLSNARRITFEYVMLKG+NDS  DA  
Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++LKGIPAKINLIPFNPWPG +Y CSD + I  FSE +  +GY+SP+RTPRG DILAA
Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASPVRTPRGRDILAA 391

Query: 362 CGQLKSLSKRIPKVPRQEMQI 382
           CGQLKS ++++    R  ++ 
Sbjct: 392 CGQLKSETEKLRARARLMLEE 412


>gi|126733857|ref|ZP_01749604.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2]
 gi|126716723|gb|EBA13587.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2]
          Length = 391

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 207/378 (54%), Positives = 273/378 (72%), Gaps = 10/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++LIG+ R+++ +AL+ +G  ++  +MR  QIW+WIY  G+RDF  M+++S++ R +L +
Sbjct: 23  QNLIGLSRDQMRDALIAVGTAEKQAKMRVGQIWQWIYHWGVRDFSAMTNLSKDYRAMLAE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F I  PE+V  ++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+L
Sbjct: 83  TFVIALPEVVTRQVSDDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTL 137

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QV++AR  L ++P     E        R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMIARDDLDEWP-----EPGTRTEDTRLLSNIVLMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IAR  +EIG  LA+S HA 
Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCQLAVSFHAT 252

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +ND+R+ LVPIN+++P+  L+DA R YP +SN+ RITFEYVML G+NDS  DA  LIK++
Sbjct: 253 TNDVRDRLVPINKRWPISDLLDALREYPKVSNSERITFEYVMLDGVNDSDEDAHRLIKLI 312

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +GIPAKINLIPFN WPG  Y  S    I  FSE I ++GY+SP+R PRG DI+AACGQLK
Sbjct: 313 EGIPAKINLIPFNEWPGAPYKRSSNNRIRKFSEIIYQAGYASPVRKPRGEDIMAACGQLK 372

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K   Q  Q  G
Sbjct: 373 SATERARKSKAQIAQEAG 390


>gi|217979092|ref|YP_002363239.1| radical SAM enzyme, Cfr family [Methylocella silvestris BL2]
 gi|254807188|sp|B8EIR0|RLMN_METSB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|217504468|gb|ACK51877.1| radical SAM enzyme, Cfr family [Methylocella silvestris BL2]
          Length = 399

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 218/371 (58%), Positives = 277/371 (74%), Gaps = 1/371 (0%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            SL G+ R+ L  ALL+IG P+R +RMRT+Q+W WIY RG   F  M ++S+ +R  L +
Sbjct: 23  RSLAGLTRDGLAAALLEIGAPERELRMRTAQLWHWIYHRGAGSFDDMLNVSKVLRTQLAE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-EIETVYIPEKSRGTLCVSSQVGCS 125
            F++  P+IV E++S DGTRKWL+RF        + E+E VYIP+  RGTLCVSSQVGC+
Sbjct: 83  KFTLARPQIVTEQVSTDGTRKWLIRFAPSAESDRLAEVECVYIPDVDRGTLCVSSQVGCT 142

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQK VRNLTA+EI+ Q+++AR  +GDFPG    +G    S  R ++NIV M
Sbjct: 143 LTCSFCHTGTQKFVRNLTAQEIIAQLIIARDRIGDFPGLAPRDGKGSNSGSRLVTNIVFM 202

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N DNV  ++S+ SD  GLS S+RRIT+ST+G VP +  +GE+ G MLAISLHA
Sbjct: 203 GMGEPLYNLDNVVDAVSVLSDGDGLSLSRRRITVSTAGVVPKLPELGEKTGAMLAISLHA 262

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LRN LVP+N+KYP+  L+ ACR YPG SNARRITFEYVMLKGINDSP DA  L+++
Sbjct: 263 VRDELRNTLVPLNKKYPIAALLQACRDYPGASNARRITFEYVMLKGINDSPSDARELVRL 322

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWPG  Y CSD   I  FS+ +  +GY+SP+RTPRG DILAACGQL
Sbjct: 323 LKGIPAKINLIPFNPWPGTAYECSDDAVIEKFSDIVFNAGYASPVRTPRGRDILAACGQL 382

Query: 366 KSLSKRIPKVP 376
           KS ++++    
Sbjct: 383 KSETEKLRARA 393


>gi|310817045|ref|YP_003965009.1| Ribosomal RNA large subunit methyltransferase N [Ketogulonicigenium
           vulgare Y25]
 gi|308755780|gb|ADO43709.1| Ribosomal RNA large subunit methyltransferase N [Ketogulonicigenium
           vulgare Y25]
          Length = 409

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 199/371 (53%), Positives = 273/371 (73%), Gaps = 8/371 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+GM R+++ +A++ IG+P++  +MR  Q+W+WIYV G+RDF  M+++++++R  L + 
Sbjct: 38  NLVGMTRDQMRQAMIDIGVPEKQAKMRMGQLWQWIYVWGVRDFALMTNLAKDLRAKLAET 97

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           + +  PE+V  ++S DGTRK+L+R     I G  E+E VYIPE  RGTLCVSSQVGC+LT
Sbjct: 98  YVLAVPEVVTRQVSEDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCVSSQVGCTLT 152

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLT  EI+ QV++AR  LG++P        + P   R++SNIV+MGM
Sbjct: 153 CSFCHTGTQKLVRNLTTAEIVGQVMVARDDLGEWPHPGQDVSELGP---RRLSNIVLMGM 209

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ I  D  G+  S+RRITLSTSG VP IAR   EIG  LA+S HA +
Sbjct: 210 GEPLYNFENVRDAMKICMDPEGIQLSRRRITLSTSGIVPEIARTAVEIGCQLAVSFHATT 269

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +D+RN+LVP+NRK+ +E L+ A R YP LSN+ RITFEYVML+G+NDS  DA  L+++++
Sbjct: 270 DDVRNVLVPVNRKWNIEALLTALREYPALSNSERITFEYVMLRGVNDSDDDARRLVELIR 329

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  Y  S +  I  F + + R+GY+SP+R PRG DI+AACGQLKS
Sbjct: 330 GIPAKINLIPFNEWPGSPYQRSTKARIEAFGDIVNRAGYASPVRRPRGEDIMAACGQLKS 389

Query: 368 LSKRIPKVPRQ 378
            ++R  K   Q
Sbjct: 390 ATERARKSRAQ 400


>gi|83855374|ref|ZP_00948904.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. NAS-14.1]
 gi|83843217|gb|EAP82384.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. NAS-14.1]
          Length = 391

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 202/378 (53%), Positives = 268/378 (70%), Gaps = 10/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+G+ R+ +  AL+  G P++  +MR  QIW+WIY  G RDF  M+++S+  R  L +
Sbjct: 23  VNLVGLTRDAMRAALIAEGTPEKQAKMRVGQIWQWIYQWGTRDFADMTNLSKAFRAELAE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLCVSSQVGC+L
Sbjct: 83  KFVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCVSSQVGCTL 137

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P         +    R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWPVP-----GTLTDAPRLLSNIVLMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP IAR  EEIG  LA+S HA 
Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAVSFHAT 252

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++++R+ LVPIN+++ +  LI+A R YP +SN+ RITFEYVML G+NDS  DA  LI+++
Sbjct: 253 TDEVRDKLVPINKRWNIAELIEALRAYPKVSNSERITFEYVMLDGVNDSDADAHRLIELI 312

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +GIPAKINLIPFN WPG  Y  S    I  FSE + ++GY+SP+R PRG DI+AACGQLK
Sbjct: 313 RGIPAKINLIPFNEWPGAPYKRSSNNRIRAFSEIVYQAGYASPVRKPRGEDIMAACGQLK 372

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K  +Q     G
Sbjct: 373 SATERERKSRKQIEADAG 390


>gi|163745013|ref|ZP_02152373.1| hypothetical protein OIHEL45_05480 [Oceanibulbus indolifex HEL-45]
 gi|161381831|gb|EDQ06240.1| hypothetical protein OIHEL45_05480 [Oceanibulbus indolifex HEL-45]
          Length = 393

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 199/378 (52%), Positives = 265/378 (70%), Gaps = 10/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+G+ R+ + + L+  G P++  +MR  QIW+WIY  G+RDF  M+++++  R  L +
Sbjct: 23  VNLVGLTRDAMRDVLIANGTPEKQAKMRVGQIWQWIYQWGVRDFDSMTNLAKGYRAELAE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F I  PE+V  + S DGTRK+L+R     I G  E+E VYIPE+ RGTLCVSSQVGC+L
Sbjct: 83  KFVIEVPEVVTRQESEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCVSSQVGCTL 137

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QV++AR  L ++P     E        R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLDEWP-----ETGTRTEEARLLSNIVLMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP I R   EIG  LA+S HA 
Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIHRTAAEIGCQLAVSFHAT 252

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++++RN LVPIN+++ +E L+DA R YP +SN+ RITFEYVMLKG+NDS  DA  L++++
Sbjct: 253 TDEVRNKLVPINKRWNIEELLDALRAYPKVSNSERITFEYVMLKGVNDSDEDAHRLVELI 312

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KGIPAKINLIPFN WPG  Y  S    I  F++ +  +GY+SP+R PRG DI+AACGQLK
Sbjct: 313 KGIPAKINLIPFNEWPGSPYERSSNNRIRAFADIVYNAGYASPVRKPRGEDIMAACGQLK 372

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K  +Q     G
Sbjct: 373 SATERARKSRKQIEAEAG 390


>gi|77464959|ref|YP_354463.1| radical SAM superfamily protein [Rhodobacter sphaeroides 2.4.1]
 gi|126460828|ref|YP_001041942.1| radical SAM protein [Rhodobacter sphaeroides ATCC 17029]
 gi|221640880|ref|YP_002527142.1| Radical SAM enzyme, Cfr family [Rhodobacter sphaeroides KD131]
 gi|332559858|ref|ZP_08414180.1| Radical SAM enzyme, Cfr family protein [Rhodobacter sphaeroides
           WS8N]
 gi|123757738|sp|Q3IY22|RLMN_RHOS4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829867|sp|A3PFQ4|RLMN_RHOS1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807200|sp|B9KQP1|RLMN_RHOSK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|77389377|gb|ABA80562.1| radical SAM superfamily protein [Rhodobacter sphaeroides 2.4.1]
 gi|126102492|gb|ABN75170.1| radical SAM enzyme, Cfr family [Rhodobacter sphaeroides ATCC 17029]
 gi|221161661|gb|ACM02641.1| Radical SAM enzyme, Cfr family [Rhodobacter sphaeroides KD131]
 gi|332277570|gb|EGJ22885.1| Radical SAM enzyme, Cfr family protein [Rhodobacter sphaeroides
           WS8N]
          Length = 392

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 207/378 (54%), Positives = 276/378 (73%), Gaps = 10/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++G+ REEL  AL+  G P+R  +MR  Q+W+W+Y  G+RDF  M++++++ R LL +
Sbjct: 24  VNIVGLTREELLAALVAAGTPERQAKMRAGQVWQWVYHWGVRDFAQMTNLAKDYRALLAE 83

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           HF+I+ PE+V  +IS DGTRK+L+R     I G  E+ETVYIPE+ RGTLCVSSQVGC+L
Sbjct: 84  HFAIVLPEVVTRQISADGTRKYLIR-----IAGGHEVETVYIPEEGRGTLCVSSQVGCTL 138

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ Q++L R  LG++P     E        R +SN+V+MG
Sbjct: 139 TCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWP-----ERGAPKDETRLVSNLVLMG 193

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ +  D  GLS S+RRITLSTSG VP IAR  EEIG  LAIS HA 
Sbjct: 194 MGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHAT 253

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++++R+ILVPIN+++ +  L+D+ R YP LSN+ RITFEYVML G+ND+  DA  L+K++
Sbjct: 254 TDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVNDTDADARRLVKLI 313

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            GIP+KINLIPFN WPG  Y  S  + I  F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 314 SGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPRGEDIMAACGQLK 373

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K   Q    TG
Sbjct: 374 SATERARKSRAQIAAETG 391


>gi|110677600|ref|YP_680607.1| hypothetical protein RD1_0192 [Roseobacter denitrificans OCh 114]
 gi|123066012|sp|Q16DM2|RLMN_ROSDO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|109453716|gb|ABG29921.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 394

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 203/378 (53%), Positives = 270/378 (71%), Gaps = 10/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+G+ R  + +AL+  G P++  +MR  QIW+WIY  G+RDF  M+++S+  R  L +
Sbjct: 23  VNLVGLTRAAMRDALIAEGTPEKQAKMRVGQIWQWIYQWGVRDFDLMTNLSKAYRAQLKE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F +  PE+V  ++S DGTRK+L+R     I G  E+E VYIP++ RGTLCVSSQVGC+L
Sbjct: 83  KFVVEVPEVVTRQVSEDGTRKYLVR-----IAGGHEVEVVYIPDEGRGTLCVSSQVGCTL 137

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P     E        R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWP-----EIGAPKDETRLLSNIVLMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP IAR   EIG  LA+S HA 
Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAVEIGCQLAVSFHAT 252

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++D+R+ LVPIN+++ +E+L++A R YP +SN+ RITFEYVML G+NDS  DA  L+K++
Sbjct: 253 TDDVRDTLVPINKRWNIEVLLEALRAYPKVSNSERITFEYVMLHGVNDSDEDARRLVKLI 312

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            GIPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 313 DGIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLK 372

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K  +Q    TG
Sbjct: 373 SATERARKSRKQIAAETG 390


>gi|154251833|ref|YP_001412657.1| radical SAM protein [Parvibaculum lavamentivorans DS-1]
 gi|205829796|sp|A7HSW7|RLMN_PARL1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|154155783|gb|ABS63000.1| radical SAM enzyme, Cfr family [Parvibaculum lavamentivorans DS-1]
          Length = 399

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 223/380 (58%), Positives = 275/380 (72%), Gaps = 7/380 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L G+ R  L +AL   G+P   +RMR  QIW  +Y RG  DF+ M+ +S+E+R  L 
Sbjct: 21  RPHLAGLTRPLLMDALKAFGLPDNQLRMRAGQIWNGLYNRGFTDFERMTTLSKELRGKLA 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGC 124
             F I   EIV E+ S DGTRKWLLR P+   G    E+ETVYIPE+ RGTLCVSSQVGC
Sbjct: 81  DAFDISRLEIVTEQKSVDGTRKWLLRLPSGIPGVPGPEVETVYIPEEGRGTLCVSSQVGC 140

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTC+FC+TGTQKLVRNLTA EI+ Q+LLAR  LG++P           S  R I+NIVM
Sbjct: 141 TLTCTFCHTGTQKLVRNLTAGEIVGQILLARDALGEWPDG------GRNSEDRLITNIVM 194

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV+ +L + SD  GLS SKRRITLSTSG VP I R GEEIG MLAISLH
Sbjct: 195 MGMGEPLYNFENVRDALEVVSDGEGLSLSKRRITLSTSGVVPMIERAGEEIGCMLAISLH 254

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++ RN LVP+N+KYP+  L++ACR+YPG+SNARRITFEYVMLKG+NDS  DA  L++
Sbjct: 255 AVDDETRNRLVPLNKKYPIAELLEACRNYPGVSNARRITFEYVMLKGVNDSLEDAKALVR 314

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK IPAKINLIPFNPWPG  Y CSD + I  F++ + R+GY+SP+RTPRG DI+AACGQ
Sbjct: 315 LLKHIPAKINLIPFNPWPGSPYECSDWEQIEKFADVVNRAGYASPVRTPRGRDIMAACGQ 374

Query: 365 LKSLSKRIPKVPRQEMQITG 384
           LKS + +     R + +   
Sbjct: 375 LKSETVKARASERFKGEKAA 394


>gi|27375636|ref|NP_767165.1| hypothetical protein bll0525 [Bradyrhizobium japonicum USDA 110]
 gi|81740269|sp|Q89X03|RLMN_BRAJA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|27348773|dbj|BAC45790.1| bll0525 [Bradyrhizobium japonicum USDA 110]
          Length = 400

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/377 (60%), Positives = 279/377 (74%), Gaps = 9/377 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R EL + L +IG+     +MR  Q+W W+Y RG ++F  M+ IS+ +R  L 
Sbjct: 26  KPSLIGLSRNELADRLGEIGVAPAQRKMRVQQLWHWMYFRGAQNFDEMTSISKGIRAELA 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPAR-CIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           QHF++  PE+V E+IS DGTRKWLLR P+   +    E+E VYIPE  RGTLCVSSQVGC
Sbjct: 86  QHFTVDRPEVVAEQISNDGTRKWLLRLPSGDNVEKAHEVECVYIPETDRGTLCVSSQVGC 145

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ QV++AR  L D+   ED          R+++NIVM
Sbjct: 146 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWADRED--------GTRRVTNIVM 197

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I  D+ G+  S+RRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 198 MGMGEPLYNFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLH 257

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LRN LVP+NRKYP++ L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L+K
Sbjct: 258 AVRDELRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVK 317

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGI AKINLIPFNPWPG  Y CSD   I  FSE I  +GYSSP+RTPRG DILAACGQ
Sbjct: 318 LLKGIHAKINLIPFNPWPGTAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 377

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    RQ ++
Sbjct: 378 LKSETEKLSARERQTLR 394


>gi|83941897|ref|ZP_00954359.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. EE-36]
 gi|83847717|gb|EAP85592.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. EE-36]
          Length = 391

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 203/378 (53%), Positives = 267/378 (70%), Gaps = 10/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+G+ R+ +  AL+  G P++  +MR  QIW+WIY  G RDF  M+++S+  R  L +
Sbjct: 23  VNLVGLTRDAMRAALIAEGTPEKQAKMRVGQIWQWIYQWGTRDFADMTNLSKAFRAELAE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLCVSSQVGC+L
Sbjct: 83  KFVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCVSSQVGCTL 137

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P         +    R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWPVP-----GTLTDAPRLLSNIVLMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP IAR  EEIG  LA+S HA 
Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAVSFHAT 252

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++++RN LVPIN+++ +  LI A R YP +SN+ RITFEYVML G+NDS  DA  LI+++
Sbjct: 253 TDEVRNKLVPINKRWNIAELIKALRAYPKVSNSERITFEYVMLDGVNDSDADAHRLIELI 312

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +GIPAKINLIPFN WPG  Y  S    I  FSE + ++GY+SP+R PRG DI+AACGQLK
Sbjct: 313 RGIPAKINLIPFNEWPGAPYKRSSNNRIRAFSEIVYQAGYASPVRKPRGEDIMAACGQLK 372

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K  +Q     G
Sbjct: 373 SATERERKSRKQIEADAG 390


>gi|254486932|ref|ZP_05100137.1| radical SAM enzyme, Cfr family [Roseobacter sp. GAI101]
 gi|214043801|gb|EEB84439.1| radical SAM enzyme, Cfr family [Roseobacter sp. GAI101]
          Length = 391

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 203/377 (53%), Positives = 266/377 (70%), Gaps = 10/377 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G+ R+ + E L+  G P++  +MR  QIW+WIY  G RDF  M+++S+  R  L + 
Sbjct: 24  NLVGLTRDAMREVLIAQGTPEKQAKMRVGQIWQWIYQWGTRDFAEMTNLSKAFRAELAEK 83

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLCVSSQVGC+LT
Sbjct: 84  FVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEDGRGTLCVSSQVGCTLT 138

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV++AR  L ++P    I         R +SNIV+MGM
Sbjct: 139 CSFCHTGTQKLVRNLTAAEIIGQVMVARDDLDEWPVPGTIT-----EAPRLLSNIVLMGM 193

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP IAR  EEIG  LA+S HA +
Sbjct: 194 GEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAVSFHATT 253

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R+ LVPIN+++ +  LI+A R YP +SN+ RITFEYVML G+NDS  DA  LI++++
Sbjct: 254 DEVRDKLVPINKRWNIAELIEALRSYPKVSNSERITFEYVMLNGVNDSDADAYRLIELIR 313

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  Y  S    I  FSE I ++GY+SP+R PRG DI+AACGQLKS
Sbjct: 314 GIPAKINLIPFNEWPGAPYTRSSNNRIRAFSEIIYKAGYASPVRKPRGEDIMAACGQLKS 373

Query: 368 LSKRIPKVPRQEMQITG 384
            ++R  K  +Q     G
Sbjct: 374 ATERARKSRKQIEADAG 390


>gi|146276099|ref|YP_001166258.1| radical SAM protein [Rhodobacter sphaeroides ATCC 17025]
 gi|205829868|sp|A4WNI9|RLMN_RHOS5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145554340|gb|ABP68953.1| radical SAM enzyme, Cfr family [Rhodobacter sphaeroides ATCC 17025]
          Length = 392

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 211/377 (55%), Positives = 276/377 (73%), Gaps = 10/377 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++G+ REEL  AL+  G P+R  RMR  Q+W+W+Y  G+RDF  M++++++ R LL +H
Sbjct: 25  NIVGLTREELMAALVAAGTPERQARMRMGQVWQWVYHWGVRDFAQMTNLAKDYRALLAEH 84

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F+I+ PE+V  +IS DGTRK+L+R     I G  E+ETVYIPE+ RGTLCVSSQVGC+LT
Sbjct: 85  FAIVLPEVVTRQISADGTRKYLIR-----IAGGHEVETVYIPEEGRGTLCVSSQVGCTLT 139

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV+L R  LG++P     E        R +SN+V+MGM
Sbjct: 140 CSFCHTGTQKLVRNLTAGEIVGQVMLVRDDLGEWP-----ERGAPKDETRLVSNLVLMGM 194

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ +  D  GLS S+RRITLSTSG VP IAR  EEIG  LAIS HA +
Sbjct: 195 GEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATT 254

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R+ILVPIN+++ +  L+D+ R YP LSN+ RITFEYVML GINDS  DA  L+K++ 
Sbjct: 255 DEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGINDSDADARRLVKLIS 314

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIP+KINLIPFN WPG  Y  S  + I  F++ I ++GY+SPIRTPRG DI+AACGQLKS
Sbjct: 315 GIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPRGEDIMAACGQLKS 374

Query: 368 LSKRIPKVPRQEMQITG 384
            ++R  K   Q    TG
Sbjct: 375 ATERARKSRAQIAAETG 391


>gi|205829854|sp|B1M1U6|RLMN_METRJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 424

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 214/384 (55%), Positives = 274/384 (71%), Gaps = 5/384 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ SL+G+ R+ L+  L+ +G+P+R  RMR  Q+W W+  RG  DF  M+++ + ++  L
Sbjct: 30  RRPSLVGLTRDALKAQLIGMGVPERESRMRAGQVWHWVNFRGASDFAEMTNVGKALKAQL 89

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPA---RCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            +HF++  PE+   ++S DGTRKWLLR      +      EIE VYIP   RGTLCVSSQ
Sbjct: 90  AEHFTLERPEVASRQVSRDGTRKWLLRMAPTNRQEHNRGAEIECVYIPGPDRGTLCVSSQ 149

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC-EDIEGMVIPSVGRKIS 180
           VGC+LTCSFC+TGTQ+LVRNL+A EI+ Q++ AR  LGD+PG     +      VGR ++
Sbjct: 150 VGCTLTCSFCHTGTQRLVRNLSAAEIVQQLVTARDELGDWPGQMPSRDAGGSGEVGRLVT 209

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIV MGMGEPL N D V  ++ + SD  GL  S+RRIT+STSG VP I R+GE+   MLA
Sbjct: 210 NIVFMGMGEPLYNLDAVVDAVGVMSDQEGLGLSRRRITVSTSGVVPQIPRLGEQANAMLA 269

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHAV +DLR+ LVP+NRKYP+  L+ ACR YPGLSNARRITFEYVMLKG+NDS  DA 
Sbjct: 270 ISLHAVRDDLRDELVPLNRKYPIAELLAACRAYPGLSNARRITFEYVMLKGVNDSDADAR 329

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+++LKGIPAKINLIPFNPWPG  Y CSD   I  FSE +  +GY+SP+RTPRG DILA
Sbjct: 330 ELVRLLKGIPAKINLIPFNPWPGSRYECSDWDRIERFSEIVFNAGYASPVRTPRGRDILA 389

Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
           ACGQLKS ++++    R  MQ  G
Sbjct: 390 ACGQLKSETEKLRARARL-MQEEG 412


>gi|260432258|ref|ZP_05786229.1| radical SAM enzyme, Cfr family [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416086|gb|EEX09345.1| radical SAM enzyme, Cfr family [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 395

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 204/381 (53%), Positives = 267/381 (70%), Gaps = 12/381 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R+ L E L++ G P++  +MR +QIW+WIY  G+RDF  M+++++  R  L 
Sbjct: 22  KINLVGLTRDRLREVLIEHGTPEKQAKMRVNQIWQWIYQWGVRDFDQMTNLAKAYRAQLA 81

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  PE+V  +IS DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 82  EHFVIEIPEVVTRQISSDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCT 136

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ QV++AR  L ++P     +        R +SNIV+M
Sbjct: 137 LTCSFCHTGTQKLVRNLTAAEIIGQVMMARDDLDEWPTPGAPKNET-----RLLSNIVLM 191

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG +LAIS HA
Sbjct: 192 GMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 251

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R++LVPIN+++ +E L+ A   YP  SN+ RITFEYVML G+NDS  DA  LI  
Sbjct: 252 TTDEVRDVLVPINKRWNIEELLQALASYPNASNSERITFEYVMLDGVNDSDEDAHRLIDH 311

Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +K   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR  RG DI+AACG
Sbjct: 312 IKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGEDIMAACG 371

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QLKS ++R  K  RQ     G
Sbjct: 372 QLKSATERARKSRRQIEAEAG 392


>gi|85706112|ref|ZP_01037207.1| radical SAM superfamily protein [Roseovarius sp. 217]
 gi|85669276|gb|EAQ24142.1| radical SAM superfamily protein [Roseovarius sp. 217]
          Length = 392

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 206/378 (54%), Positives = 273/378 (72%), Gaps = 9/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+G+ R+ L EAL+  G P++  +MR +QIW+WIY  G+RDF  M+++++  R  L +
Sbjct: 23  VNLVGLTRDALREALIAHGTPEKQAKMRVNQIWQWIYQWGVRDFHAMTNLAKAYRAQLAE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +F +  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+L
Sbjct: 83  NFVVTIPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTL 137

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QV+LAR  L ++P   +  G       R ISNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPRPGEPVG----ERPRLISNIVLMG 193

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NFDNV+ ++ IA D  G+S S+RRITLSTSG VP IA+  +EIG +LA+S HA 
Sbjct: 194 MGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAQEIGCLLAVSFHAT 253

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ +R+ LVPIN+K+ +  L+D  R YP LSN+ RITFEYVMLK +NDS  DA  L++++
Sbjct: 254 TDAVRDALVPINKKWNIATLLDTLRDYPRLSNSERITFEYVMLKDVNDSDADARRLVQLI 313

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KGIPAKINLIPFN WPG  Y  SD+  I  F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 314 KGIPAKINLIPFNEWPGSPYERSDRDRIQRFADIIYKAGYASPIRTPRGEDIMAACGQLK 373

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K   Q     G
Sbjct: 374 SATERARKSRAQIEAEAG 391


>gi|254439770|ref|ZP_05053264.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 307]
 gi|198255216|gb|EDY79530.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 307]
          Length = 394

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 203/377 (53%), Positives = 275/377 (72%), Gaps = 8/377 (2%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++G+ R++L +AL+ +G+ ++  +MR +Q+W+W+Y  G+RDF+ M+++S++ R  L +H
Sbjct: 25  NIVGLTRDQLRDALIGVGVTEKQAKMRVNQVWQWLYHWGVRDFEVMTNLSKDFRTTLAEH 84

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           F I  PE+V + +S DGTRK+L+R     I G  E+E VYIPEK RGTLC+SSQVGC+LT
Sbjct: 85  FKIELPEVVTKDVSTDGTRKYLVR-----IAGGHEVEVVYIPEKDRGTLCISSQVGCTLT 139

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC+TGTQKLVRNLTA EI+ QV+LAR  L ++P      G   P   R +SNIV+MGM
Sbjct: 140 CSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPEPGQGTGENGP---RLLSNIVLMGM 196

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL NF+NV+ ++ IA D  G++ S+RRITLSTSG VP I R  +EIG MLAIS H  +
Sbjct: 197 GEPLYNFENVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIHRTADEIGCMLAISFHGTT 256

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R+ LVPIN+K+ LE L++A   YP +SN+ RITFEYVMLK +NDS  DA  L+K+++
Sbjct: 257 DEIRDKLVPINKKWNLEKLLEALAAYPKVSNSERITFEYVMLKDVNDSDEDARRLVKLIE 316

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIPAKINLIPFN WPG  Y  SD   I  F++ I  +GY+SPIR PRG DI+AACGQLKS
Sbjct: 317 GIPAKINLIPFNEWPGAPYKRSDADRIKAFADIIYNAGYASPIRRPRGEDIMAACGQLKS 376

Query: 368 LSKRIPKVPRQEMQITG 384
            ++R  K  +Q     G
Sbjct: 377 ATERSRKSRKQIDAEAG 393


>gi|170747554|ref|YP_001753814.1| radical SAM protein [Methylobacterium radiotolerans JCM 2831]
 gi|170654076|gb|ACB23131.1| radical SAM enzyme, Cfr family [Methylobacterium radiotolerans JCM
           2831]
          Length = 430

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 214/384 (55%), Positives = 274/384 (71%), Gaps = 5/384 (1%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ SL+G+ R+ L+  L+ +G+P+R  RMR  Q+W W+  RG  DF  M+++ + ++  L
Sbjct: 36  RRPSLVGLTRDALKAQLIGMGVPERESRMRAGQVWHWVNFRGASDFAEMTNVGKALKAQL 95

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPA---RCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            +HF++  PE+   ++S DGTRKWLLR      +      EIE VYIP   RGTLCVSSQ
Sbjct: 96  AEHFTLERPEVASRQVSRDGTRKWLLRMAPTNRQEHNRGAEIECVYIPGPDRGTLCVSSQ 155

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC-EDIEGMVIPSVGRKIS 180
           VGC+LTCSFC+TGTQ+LVRNL+A EI+ Q++ AR  LGD+PG     +      VGR ++
Sbjct: 156 VGCTLTCSFCHTGTQRLVRNLSAAEIVQQLVTARDELGDWPGQMPSRDAGGSGEVGRLVT 215

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIV MGMGEPL N D V  ++ + SD  GL  S+RRIT+STSG VP I R+GE+   MLA
Sbjct: 216 NIVFMGMGEPLYNLDAVVDAVGVMSDQEGLGLSRRRITVSTSGVVPQIPRLGEQANAMLA 275

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHAV +DLR+ LVP+NRKYP+  L+ ACR YPGLSNARRITFEYVMLKG+NDS  DA 
Sbjct: 276 ISLHAVRDDLRDELVPLNRKYPIAELLAACRAYPGLSNARRITFEYVMLKGVNDSDADAR 335

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+++LKGIPAKINLIPFNPWPG  Y CSD   I  FSE +  +GY+SP+RTPRG DILA
Sbjct: 336 ELVRLLKGIPAKINLIPFNPWPGSRYECSDWDRIERFSEIVFNAGYASPVRTPRGRDILA 395

Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
           ACGQLKS ++++    R  MQ  G
Sbjct: 396 ACGQLKSETEKLRARARL-MQEEG 418


>gi|159045851|ref|YP_001534645.1| radical SAM enzyme [Dinoroseobacter shibae DFL 12]
 gi|157913611|gb|ABV95044.1| radical SAM enzyme [Dinoroseobacter shibae DFL 12]
          Length = 406

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 211/379 (55%), Positives = 275/379 (72%), Gaps = 9/379 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R EL EAL   G P++ V+MR +QIW+W+Y RG+RDF  M+++++  R LL 
Sbjct: 35  KRNLVGLTRPELAEALAAAGTPEKQVKMRVNQIWQWLYERGVRDFNDMTNLAKPYRALLA 94

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F I  PE+V   +S DGTRK+L+R     I G  E+E VYIPE+ RGTLCVSSQVGC+
Sbjct: 95  DQFEIAVPEVVSRHVSEDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQVGCT 149

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ Q+++AR  LG++P    + G    +  R +SNIV+M
Sbjct: 150 LTCSFCHTGTQKLVRNLTAGEIVGQIMIARDDLGEWP----LPGRNPKNETRLLSNIVLM 205

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ V+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG MLA+S HA
Sbjct: 206 GMGEPLYNFEAVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCMLAVSFHA 265

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ LVPIN+++ +  L+DA R YP  SN+ RITFEYVMLKG+NDS  DA  L+++
Sbjct: 266 TTDEVRDKLVPINKRWNIATLLDALRDYPKASNSERITFEYVMLKGVNDSDEDARRLVEL 325

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIRTPRG DI+AACGQL
Sbjct: 326 IKGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 385

Query: 366 KSLSKRIPKVPRQEMQITG 384
           KS ++R  K   Q    TG
Sbjct: 386 KSATERARKSRAQIAAETG 404


>gi|149913266|ref|ZP_01901800.1| hypothetical protein RAZWK3B_04720 [Roseobacter sp. AzwK-3b]
 gi|149813672|gb|EDM73498.1| hypothetical protein RAZWK3B_04720 [Roseobacter sp. AzwK-3b]
          Length = 382

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 204/378 (53%), Positives = 275/378 (72%), Gaps = 9/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+G+ R+ L E L++ G P++  +MR +QIW+W+Y  G+RDF  M+++S+  R +L +
Sbjct: 12  TNLVGLTRDRLREVLIEAGTPEKQAKMRVNQIWQWLYQWGVRDFHAMTNLSKTYRQMLAE 71

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+L
Sbjct: 72  NFVIEIPEMVSKQVSADGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTL 126

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNL+A EI+ QV++AR  L ++P      G       R +SNIV+MG
Sbjct: 127 TCSFCHTGTQKLVRNLSAGEIVGQVMMARDDLDEWPRP----GEGAGERPRLLSNIVLMG 182

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NFDNV+ ++ IA D  G+S S+RRITLSTSG VP IA+  EEIG MLA+S HA 
Sbjct: 183 MGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAEEIGCMLAVSFHAT 242

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++++R+ LVPIN+K+ +E L+ A R YP LSN+ RITFEYVMLK +NDS  DA  L++++
Sbjct: 243 TDEVRDKLVPINKKWNIETLLGALREYPRLSNSERITFEYVMLKDVNDSDADARRLVQLI 302

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KGIPAKINLIPFN WPG  +  SD   I  F++ + ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 303 KGIPAKINLIPFNEWPGAPHQRSDWDRIEKFADIVYKAGYASPIRTPRGEDIMAACGQLK 362

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K  +Q     G
Sbjct: 363 SATERARKSRKQIESEAG 380


>gi|75676990|ref|YP_319411.1| hypothetical protein Nwi_2806 [Nitrobacter winogradskyi Nb-255]
 gi|74421860|gb|ABA06059.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrobacter winogradskyi
           Nb-255]
          Length = 427

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/377 (59%), Positives = 277/377 (73%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R E+ E L  IGIP+   RMR  Q+W W+YVRG R F  M+ +S+++R  L 
Sbjct: 51  KPSLIGLSRAEMAERLAAIGIPREQRRMRVQQLWHWMYVRGARTFAEMTSVSKDMRAELE 110

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +H ++  PE+V E+IS DGTRKWLLR P+   +  P E+E VYIPE  RGTLCVSSQVGC
Sbjct: 111 KHVTLDRPEVVAEQISSDGTRKWLLRLPSGDDLEKPHEVECVYIPETDRGTLCVSSQVGC 170

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR  L D+   E       P   R ++NIVM
Sbjct: 171 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRET------PHGNRLVTNIVM 224

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+  L I +D+ G+  SKRRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 225 MGMGEPLYNFDAVRDGLLIVADNEGIGISKRRITLSTSGVVPNIVRAGEEIGVMLAISLH 284

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYP+  L+ ACR YP  SNA+RITFEYVMLKG+NDS  DA  L+K
Sbjct: 285 AVRDELRDELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDARRLVK 344

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L GI AKINLIPFNPWPG  Y CSD   I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 345 LLNGIHAKINLIPFNPWPGTRYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 404

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    RQ ++
Sbjct: 405 LKSETEKLSARERQALR 421


>gi|114762064|ref|ZP_01441532.1| radical SAM superfamily protein [Pelagibaca bermudensis HTCC2601]
 gi|114545088|gb|EAU48091.1| radical SAM superfamily protein [Roseovarius sp. HTCC2601]
          Length = 398

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 208/379 (54%), Positives = 280/379 (73%), Gaps = 8/379 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ RE L  AL+++G P++  +MR +QIW+W+Y  G+RDF  M+++++E R  L+
Sbjct: 23  KLNLVGLTREALRAALIEMGTPEKQAKMRVNQIWQWVYHWGVRDFAEMTNLAKEYRAKLD 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HF I+ PEIV + +S DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 83  AHFEILLPEIVSKNVSVDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ Q++LAR  L ++P      G   P   R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAGEIVGQIMLARDDLDEWPEPGTGTGEGGP---RLLSNIVLM 194

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ IA D  G++ S+RRITLSTSG VP IA+  +EIG ++A+S HA
Sbjct: 195 GMGEPLYNFDNVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIAKCAKEIGCLMAVSFHA 254

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN LVPIN+++ +E L++A R YP LSN+ RITFEYVMLK +NDS  DA  L+ +
Sbjct: 255 TTDEVRNKLVPINKRWNIETLLNALREYPRLSNSERITFEYVMLKDVNDSDADARRLVNL 314

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAKINLIPFN WPG  Y  SD + I  F++ + ++GY+SPIRTPRG DI+AACGQL
Sbjct: 315 IKGIPAKINLIPFNEWPGAPYQRSDWERIERFADIVYKAGYASPIRTPRGEDIMAACGQL 374

Query: 366 KSLSKRIPKVPRQEMQITG 384
           KS ++R  K   Q    TG
Sbjct: 375 KSATERARKSRAQIAAETG 393


>gi|163733192|ref|ZP_02140636.1| hypothetical protein RLO149_11040 [Roseobacter litoralis Och 149]
 gi|161393727|gb|EDQ18052.1| hypothetical protein RLO149_11040 [Roseobacter litoralis Och 149]
          Length = 394

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 203/378 (53%), Positives = 268/378 (70%), Gaps = 10/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+G+ R  + + L+  G P++  +MR  QIW+WIY  G+RDF  M+++S+  R  L +
Sbjct: 23  VNLVGLTRAAMRDVLIAEGTPEKQAKMRVGQIWQWIYQWGVRDFDLMTNLSKAYRAELKE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F +  PE+V  ++S DGTRK+L+R     I G  E+E VYIPE  RGTLCVSSQVGC+L
Sbjct: 83  KFVVEVPEVVTRQVSEDGTRKYLVR-----IAGGHEVEVVYIPEDGRGTLCVSSQVGCTL 137

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P     E        R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVIIARDDLGEWP-----EIGAPKDETRLLSNIVLMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP IAR   EIG  LAIS HA 
Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAVEIGCQLAISFHAT 252

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++D+R+ LVPIN+++ +E+L++A R YP +SN+ RITFEYVML G+NDS  DA  L+K++
Sbjct: 253 TDDVRDKLVPINKRWNIEVLLEALRVYPKVSNSERITFEYVMLHGVNDSDEDARRLVKLI 312

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +GIPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIRTPRG DI+AACGQLK
Sbjct: 313 EGIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLK 372

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K  +Q     G
Sbjct: 373 SATERARKSRKQIAAEAG 390


>gi|205829860|sp|A8LNF0|RLMN_DINSH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 394

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 211/379 (55%), Positives = 275/379 (72%), Gaps = 9/379 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R EL EAL   G P++ V+MR +QIW+W+Y RG+RDF  M+++++  R LL 
Sbjct: 23  KRNLVGLTRPELAEALAAAGTPEKQVKMRVNQIWQWLYERGVRDFNDMTNLAKPYRALLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F I  PE+V   +S DGTRK+L+R     I G  E+E VYIPE+ RGTLCVSSQVGC+
Sbjct: 83  DQFEIAVPEVVSRHVSEDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ Q+++AR  LG++P    + G    +  R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTAGEIVGQIMIARDDLGEWP----LPGRNPKNETRLLSNIVLM 193

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+ V+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG MLA+S HA
Sbjct: 194 GMGEPLYNFEAVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCMLAVSFHA 253

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ LVPIN+++ +  L+DA R YP  SN+ RITFEYVMLKG+NDS  DA  L+++
Sbjct: 254 TTDEVRDKLVPINKRWNIATLLDALRDYPKASNSERITFEYVMLKGVNDSDEDARRLVEL 313

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIRTPRG DI+AACGQL
Sbjct: 314 IKGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 373

Query: 366 KSLSKRIPKVPRQEMQITG 384
           KS ++R  K   Q    TG
Sbjct: 374 KSATERARKSRAQIAAETG 392


>gi|92119085|ref|YP_578814.1| hypothetical protein Nham_3626 [Nitrobacter hamburgensis X14]
 gi|123386907|sp|Q1QHE3|RLMN_NITHX RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|91801979|gb|ABE64354.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrobacter hamburgensis
           X14]
          Length = 397

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/377 (59%), Positives = 278/377 (73%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R E+ E L  IG+     RMR  Q+W W+YVRG +    M+++S+++R  L 
Sbjct: 21  KPSLIGLSRAEISERLAAIGVAPAQRRMRVQQLWHWMYVRGAKTVGEMTNVSKDMRAELE 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +H ++  PE+V E+IS DGTRKWLLR P+   +  P E+E VYIPE  RGTLCVSSQVGC
Sbjct: 81  KHVTVDRPEVVAEQISNDGTRKWLLRLPSGNTLEKPHEVECVYIPETDRGTLCVSSQVGC 140

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR  L D+   E       P   R ++NIVM
Sbjct: 141 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRET------PHGNRLVTNIVM 194

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+ +L I +D+ G+  SKRRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 195 MGMGEPLYNFDAVRDALLIVADNEGIGISKRRITLSTSGVVPNIVRTGEEIGVMLAISLH 254

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LRN LVP+NRKYP+  L+ ACR YP  SNA+RITFEYVMLKG+NDS  DA  L+K
Sbjct: 255 AVRDELRNELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDAKLLVK 314

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGI AKINLIPFNPWPG  Y CSD + I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 315 LLKGIHAKINLIPFNPWPGTRYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 374

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    RQ ++
Sbjct: 375 LKSETEKLSARERQALR 391


>gi|254477449|ref|ZP_05090835.1| radical SAM enzyme, Cfr family [Ruegeria sp. R11]
 gi|214031692|gb|EEB72527.1| radical SAM enzyme, Cfr family [Ruegeria sp. R11]
          Length = 396

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 199/381 (52%), Positives = 264/381 (69%), Gaps = 12/381 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ RE++ + L++ G P++  +MR  QIW+WIY  G RDF+ M+++++  R  L 
Sbjct: 23  KINLVGLTREQMRDVLIENGTPEKQAKMRVGQIWQWIYQWGKRDFEEMTNLAKGYRAQLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLCVSSQVGC+
Sbjct: 83  ETFEISVPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEDDRGTLCVSSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT  EI+ QV++AR  L ++P              R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTPGEIIGQVMMARDDLEEWPTP-----GAPKDETRLLSNIVLM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IAR  +EIG +LAIS HA
Sbjct: 193 GMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCLLAISFHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N++R++LVPIN+++ ++ L+ A   YP  SN+ RITFEYVML G+NDS  DA  LI  
Sbjct: 253 TTNEVRDVLVPINKRWNIDELLQALADYPKASNSERITFEYVMLDGVNDSDEDAHRLIDH 312

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +K   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR  RG DI+AACG
Sbjct: 313 IKRYKIPAKINLIPFNEWPGSPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAACG 372

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QLKS ++R  K  +Q     G
Sbjct: 373 QLKSATERARKSRKQIEAEAG 393


>gi|89070636|ref|ZP_01157916.1| radical SAM superfamily protein [Oceanicola granulosus HTCC2516]
 gi|89043783|gb|EAR49985.1| radical SAM superfamily protein [Oceanicola granulosus HTCC2516]
          Length = 392

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 206/373 (55%), Positives = 273/373 (73%), Gaps = 8/373 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + +L+G+ R  L EAL   G P + VRMR +Q+W+WIY  G+RDF+ M+++++  R LL 
Sbjct: 23  RTNLVGLTRPALAEALRAAGTPDKQVRMRVNQVWQWIYHWGVRDFEAMTNLAKPYRALLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F I  PEIV  ++S DGTRK+L+R     I G  E+ETVYIPE+ RGTLC+SSQVGC+
Sbjct: 83  ENFEIALPEIVSRQVSNDGTRKYLVR-----IAGGHEVETVYIPEEDRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT  EI+ Q++LAR  LG++P      G   P   R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIVGQIMLARDDLGEWPAPGTGTGESGP---RLLSNIVLM 194

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFD V+ ++ IA D  G++ S+RRITLSTSG V  IAR  EEIG MLA+S HA
Sbjct: 195 GMGEPLYNFDAVRDAMKIAMDGEGIALSRRRITLSTSGVVAEIARCAEEIGCMLAVSFHA 254

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ LVPIN+K+ +E L+++ + YP LSN+ RITFEYVMLK +NDS  DA  L+K+
Sbjct: 255 TTDEVRDRLVPINKKWNIETLLESLKAYPKLSNSERITFEYVMLKDVNDSDDDARRLVKL 314

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIRTPRG DI+AACGQL
Sbjct: 315 IEGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 374

Query: 366 KSLSKRIPKVPRQ 378
           KS ++R  K   +
Sbjct: 375 KSATERARKSRLE 387


>gi|182677752|ref|YP_001831898.1| radical SAM protein [Beijerinckia indica subsp. indica ATCC 9039]
 gi|205829669|sp|B2IGZ5|RLMN_BEII9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|182633635|gb|ACB94409.1| radical SAM enzyme, Cfr family [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 391

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/373 (59%), Positives = 284/373 (76%), Gaps = 2/373 (0%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            SL+G  REEL +AL  IG+P+R +RMRT+Q+W WIY  GIR F  M ++ + +R  L  
Sbjct: 14  PSLLGATREELGDALAAIGVPEREIRMRTAQVWHWIYFHGIRSFDTMLNVGKGLRTTLAA 73

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           H+S+  P++V E++S DGTRKWL+R P         E+E VYIPE  RGTLC+SSQVGC+
Sbjct: 74  HYSLERPQVVSEQVSVDGTRKWLIRLPPVDAQDRGAEVECVYIPESDRGTLCISSQVGCT 133

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184
           LTCSFC+TGTQKLVRNL+A EI+ Q+++AR  LGDFPG    +  ++P+ G R I+NIV 
Sbjct: 134 LTCSFCHTGTQKLVRNLSAREIVSQLVVAREKLGDFPGLVPPKDGLLPTEGNRPITNIVF 193

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV+K++S+ SD  GLS S+RRIT+ST+G VP +  +G E G MLA+SLH
Sbjct: 194 MGMGEPLYNFDNVRKAVSVLSDGEGLSLSRRRITVSTAGVVPQMEALGREAGSMLAVSLH 253

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +DLR+ LVP+N+KYP++ L++ACR YPG SNARRITFEYVMLK INDSP +A  LI+
Sbjct: 254 AVRDDLRDKLVPLNKKYPIKTLLEACRTYPGASNARRITFEYVMLKDINDSPAEARELIR 313

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD   I  FS+ +  +GY+SP+RTPRG DILAACGQ
Sbjct: 314 LLKGIPAKINLIPFNPWPGAPYDCSDWDRIERFSDIVFNAGYASPVRTPRGRDILAACGQ 373

Query: 365 LKSLSKRIPKVPR 377
           LKS ++++    R
Sbjct: 374 LKSETEKLRARAR 386


>gi|205829850|sp|Q3SNT2|RLMN_NITWN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 397

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/377 (59%), Positives = 277/377 (73%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R E+ E L  IGIP+   RMR  Q+W W+YVRG R F  M+ +S+++R  L 
Sbjct: 21  KPSLIGLSRAEMAERLAAIGIPREQRRMRVQQLWHWMYVRGARTFAEMTSVSKDMRAELE 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +H ++  PE+V E+IS DGTRKWLLR P+   +  P E+E VYIPE  RGTLCVSSQVGC
Sbjct: 81  KHVTLDRPEVVAEQISSDGTRKWLLRLPSGDDLEKPHEVECVYIPETDRGTLCVSSQVGC 140

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR  L D+   E       P   R ++NIVM
Sbjct: 141 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRET------PHGNRLVTNIVM 194

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+  L I +D+ G+  SKRRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 195 MGMGEPLYNFDAVRDGLLIVADNEGIGISKRRITLSTSGVVPNIVRAGEEIGVMLAISLH 254

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LR+ LVP+NRKYP+  L+ ACR YP  SNA+RITFEYVMLKG+NDS  DA  L+K
Sbjct: 255 AVRDELRDELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDARRLVK 314

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L GI AKINLIPFNPWPG  Y CSD   I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 315 LLNGIHAKINLIPFNPWPGTRYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 374

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    RQ ++
Sbjct: 375 LKSETEKLSARERQALR 391


>gi|86359510|ref|YP_471402.1| hypothetical protein RHE_CH03930 [Rhizobium etli CFN 42]
 gi|86283612|gb|ABC92675.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 360

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 244/349 (69%), Positives = 289/349 (82%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
           MR SQ+W WIYVRG+ DF  M+++++++R +L QHF+I  PEIV+E++S DGTRKWLLRF
Sbjct: 1   MRVSQLWNWIYVRGVSDFDHMTNVAKDMREMLKQHFTIARPEIVEEQVSNDGTRKWLLRF 60

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
           PAR  G PVEIE VYIPE+ RGTLC+SSQVGC+LTCSFC+TGTQ+LVRNLTAEEIL Q+L
Sbjct: 61  PARGAGRPVEIEAVYIPEEGRGTLCISSQVGCTLTCSFCHTGTQRLVRNLTAEEILSQLL 120

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           LAR  LGDFP  E  +G ++P+ GRK+SNIVMMGMGEPL NFD VK++L IA+D  GLS 
Sbjct: 121 LARDRLGDFPDREAPQGTIMPAEGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSL 180

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           SKRR+TLSTSG VP I R GEEIGVMLAISLHAV +DLR+ILVPIN+KYPL+ LIDAC+ 
Sbjct: 181 SKRRVTLSTSGVVPEIFRTGEEIGVMLAISLHAVRDDLRDILVPINKKYPLKELIDACKA 240

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           YPGLSNARRITFEYVMLK +NDS  DA  LIK+LKG+PAKINLIPFNPWPG  Y CSD +
Sbjct: 241 YPGLSNARRITFEYVMLKDVNDSLEDAKGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWE 300

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
            I  F++ I  +GY+SPIRTPRG DILAACGQLKS S+R+ K  R   +
Sbjct: 301 QIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTERLAFE 349


>gi|254512050|ref|ZP_05124117.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium KLH11]
 gi|221535761|gb|EEE38749.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium KLH11]
          Length = 397

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 204/381 (53%), Positives = 265/381 (69%), Gaps = 12/381 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R+ L  AL++ G P++  +MRT QIW+WIY  G+RDF  M+++++  R  L 
Sbjct: 22  KVNLVGLTRDALRAALIEHGTPEKQAKMRTGQIWQWIYQWGVRDFAEMTNLAKAYRAQLA 81

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  PE+V  ++S DGTRK+L R     I G  E+E VYIPE  RGTLC+SSQVGC+
Sbjct: 82  EHFVIEIPEVVTRQVSEDGTRKYLCR-----IAGGHEVEVVYIPEDDRGTLCISSQVGCT 136

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ QV++AR  L ++P              R +SNIV+M
Sbjct: 137 LTCSFCHTGTQKLVRNLTAAEIVGQVMMARDDLEEWPTP-----GAPKDETRLLSNIVLM 191

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG +LAIS HA
Sbjct: 192 GMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 251

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++ R++LVPIN+++ +E L+ A   YP +SN+ RITFEYVML G+NDS  DA  LI+ 
Sbjct: 252 TTDETRDMLVPINKRWNIEELLQALASYPKVSNSERITFEYVMLDGVNDSDADAHRLIEH 311

Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +K   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR  RG DI+AACG
Sbjct: 312 IKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGEDIMAACG 371

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QLKS ++R  K  +Q     G
Sbjct: 372 QLKSATERARKSRKQIEAEAG 392


>gi|254451490|ref|ZP_05064927.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 238]
 gi|198265896|gb|EDY90166.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 238]
          Length = 399

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 202/378 (53%), Positives = 273/378 (72%), Gaps = 8/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++G+ R++L +AL+ +G+ ++  +MR +Q+W+W+Y  G+R+F  M+++S++ R  L +
Sbjct: 29  TNIVGLTRDQLRDALIGVGVTEKQAKMRVNQVWQWLYHWGVREFDVMTNLSKDFRATLAE 88

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           HF I  PE+V + +S DGTRK+L+R     I G  E+E VYIPEK RGTLC+SSQVGC+L
Sbjct: 89  HFKIELPEVVTKDVSTDGTRKYLVR-----IAGGHEVEVVYIPEKDRGTLCISSQVGCTL 143

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QV+LAR  L ++P      G   P   R +SNIV+MG
Sbjct: 144 TCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPEPGQGTGDNGP---RLLSNIVLMG 200

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ IA D  G++ S+RRITLSTSG VP I R   EIG MLAIS H  
Sbjct: 201 MGEPLYNFENVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIHRTANEIGCMLAISFHGT 260

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++++R+ LVPIN+K+ LE L++A   YP +SN+ RITFEYVMLK +NDS  DA  L+K++
Sbjct: 261 TDEIRDKLVPINKKWNLEKLLEALAAYPKVSNSERITFEYVMLKDVNDSDEDARRLVKLI 320

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +GIPAKINLIPFN WPG  Y  SD   I  F++ I  +GY+SPIR PRG DI+AACGQLK
Sbjct: 321 EGIPAKINLIPFNEWPGAPYKRSDSDRIKAFADIIYNAGYASPIRRPRGEDIMAACGQLK 380

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K  +Q     G
Sbjct: 381 SATERARKSRKQIDADAG 398


>gi|85714487|ref|ZP_01045475.1| hypothetical protein NB311A_16087 [Nitrobacter sp. Nb-311A]
 gi|85698934|gb|EAQ36803.1| hypothetical protein NB311A_16087 [Nitrobacter sp. Nb-311A]
          Length = 423

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/377 (59%), Positives = 277/377 (73%), Gaps = 7/377 (1%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIG+ R E+ E L  IG+P+   RMR  Q+W W+YVRG + F  M+ +S+++   L 
Sbjct: 47  KPSLIGLSRAEIAERLAAIGVPREQRRMRVQQLWHWMYVRGAQSFSEMTSVSKDMHTELE 106

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +H ++  PE+V E+IS DGTRKWLLR P+   +  P E+E VYIPE  RGTLC+SSQVGC
Sbjct: 107 KHVTVDRPEVVAEQISSDGTRKWLLRLPSGNDLEKPHEVECVYIPETDRGTLCISSQVGC 166

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR  L D+   E       P   R ++NIVM
Sbjct: 167 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRET------PHGNRLVTNIVM 220

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V+  L I +D+ G+  SKRRITLSTSG VPNI R GEEIGVMLAISLH
Sbjct: 221 MGMGEPLYNFDAVRDGLLIVADNEGIGISKRRITLSTSGVVPNIVRAGEEIGVMLAISLH 280

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV ++LRN LVP+NRKYP+  L+ ACR YP  SNA+RITFEYVMLKG+NDS  DA  L+K
Sbjct: 281 AVRDELRNELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLEDAKRLVK 340

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGI AKINLIPFNPWPG  Y CSD   I  FSE +  +GYSSP+RTPRG DILAACGQ
Sbjct: 341 LLKGIHAKINLIPFNPWPGTRYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 400

Query: 365 LKSLSKRIPKVPRQEMQ 381
           LKS ++++    RQ ++
Sbjct: 401 LKSETEKLSARERQALR 417


>gi|254462169|ref|ZP_05075585.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium HTCC2083]
 gi|206678758|gb|EDZ43245.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 391

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 201/378 (53%), Positives = 268/378 (70%), Gaps = 10/378 (2%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+G+ R+ + +AL++ G P++  +MR  QIW+WIY  G RDF  M+++S+  R  L +
Sbjct: 23  INLVGLTRDGMRDALIENGTPEKQAKMRVGQIWQWIYQWGKRDFDEMTNLSKTYRAELGE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F I  PE+V  ++S DGTRK+L++     I G  E+E VYIPE  RGTLCVSSQVGC+L
Sbjct: 83  KFVIEVPEVVTRQVSEDGTRKYLVK-----IAGGHEVEVVYIPEDGRGTLCVSSQVGCTL 137

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QV++AR  L ++P     E        R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIIGQVMIARDDLNEWP-----EQGAPKDEIRLLSNIVLMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV+ ++ IA D+ G+  S+RRITLSTSG VP IAR  EEIG  LAIS HA 
Sbjct: 193 MGEPLYNFENVRDAMKIAMDAEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHAT 252

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++++R+ LVPIN+++ +  L++A R YP +SN+ RITFEYVML G+ND+  DA  LIK++
Sbjct: 253 TDEVRDKLVPINKRWNIAELVEALRAYPRVSNSERITFEYVMLDGVNDTDADAHRLIKLI 312

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +GIPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIR PRG DI+AACGQLK
Sbjct: 313 EGIPAKINLIPFNEWPGAPYKRSSGNRIHRFADIIYKAGYASPIRKPRGEDIMAACGQLK 372

Query: 367 SLSKRIPKVPRQEMQITG 384
           S ++R  K  +Q     G
Sbjct: 373 SATERARKSRKQIQAEAG 390


>gi|99082854|ref|YP_615008.1| hypothetical protein TM1040_3014 [Ruegeria sp. TM1040]
 gi|122984035|sp|Q1GC70|RLMN_SILST RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|99039134|gb|ABF65746.1| hypothetical protein TM1040_3014 [Ruegeria sp. TM1040]
          Length = 397

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 199/381 (52%), Positives = 263/381 (69%), Gaps = 12/381 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R+ +   L++ G P++  +MR  QIW+WIY  G+RDF  M+++++  R  L 
Sbjct: 23  KINLVGLTRDRMRAVLIENGTPEKQAKMRVGQIWQWIYQWGVRDFAEMTNLAKAYRAQLE 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+
Sbjct: 83  ETFEIRIPEVVSKQVSTDGTRKYLVR-----INGGHEVEVVYIPEDDRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT  EI+ QV++AR  L ++P              R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIIGQVMMARDDLEEWPTP-----GAPKDETRLLSNIVLM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG +LAIS HA
Sbjct: 193 GMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N++R++LVPINR++ ++ L+ A   YP +SN+ RITFEYVML G+NDS  DA  L+  
Sbjct: 253 TTNEVRDVLVPINRRWNIDELLQALADYPKVSNSERITFEYVMLDGVNDSDEDAHRLLDH 312

Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +K   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR  RG DI+AACG
Sbjct: 313 IKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAACG 372

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QLKS ++R  K  +Q     G
Sbjct: 373 QLKSATERARKSRKQIEAEAG 393


>gi|300024847|ref|YP_003757458.1| radical SAM enzyme, Cfr family [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526668|gb|ADJ25137.1| radical SAM enzyme, Cfr family [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 401

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/376 (60%), Positives = 289/376 (76%), Gaps = 2/376 (0%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SL G+ R  L+EAL   G+P++ + MR +Q+W WIYVRGI  F+ M+D+S+++R  L
Sbjct: 20  EKRSLAGLTRARLKEALAAGGVPEKQLNMRVNQLWSWIYVRGITRFEDMTDVSKDLRRQL 79

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI-GGPVEIETVYIPEKSRGTLCVSSQVG 123
           +  +++  PEI+ E+IS DGTRKWLLR   R     P E+ETVYIPE  RGTLC+SSQVG
Sbjct: 80  DAIYTLDRPEIISEQISVDGTRKWLLRLAKRGHEARPPEVETVYIPESDRGTLCISSQVG 139

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE-GMVIPSVGRKISNI 182
           C+LTCSFC+TGTQ+LVRNL A+EI+ Q++LAR  +GD+PG +  + G ++P+  RKI+N+
Sbjct: 140 CTLTCSFCHTGTQRLVRNLEAQEIVGQIMLARDRIGDWPGAKGPDDGRLLPASERKITNV 199

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V+MGMGEPL NFDNVK ++ +ASD  GL+ SKRRITLSTSG VP I R GEE   MLAIS
Sbjct: 200 VLMGMGEPLYNFDNVKAAMEVASDGDGLALSKRRITLSTSGVVPEIPRWGEEADTMLAIS 259

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++ LR+ LVPINRKYP+  L+ ACR YPGLSNARRITFEYVMLKG+NDS  +A  L
Sbjct: 260 LHATNDALRDELVPINRKYPIAELMQACRDYPGLSNARRITFEYVMLKGVNDSLAEARAL 319

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K+L GIPAKINLIPFNPWP   Y CSD + I  F+E + R+GY+SP+RTPRG DILAAC
Sbjct: 320 VKLLAGIPAKINLIPFNPWPNTRYECSDWETIERFAEVVNRAGYASPVRTPRGRDILAAC 379

Query: 363 GQLKSLSKRIPKVPRQ 378
           GQL+S S R+    R+
Sbjct: 380 GQLRSESLRLSASERR 395


>gi|220924357|ref|YP_002499659.1| radical SAM enzyme, Cfr family [Methylobacterium nodulans ORS 2060]
 gi|219948964|gb|ACL59356.1| radical SAM enzyme, Cfr family [Methylobacterium nodulans ORS 2060]
          Length = 431

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 217/385 (56%), Positives = 281/385 (72%), Gaps = 4/385 (1%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M    + SL+G+ R  L E L  IG+P+R  RMRT Q+W WI VRG   F+ M+++ + +
Sbjct: 32  MVATGRPSLVGLTRNALRERLAAIGVPEREQRMRTGQLWHWINVRGASSFEAMTNVGKAL 91

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLC 117
           +  L Q +++  PE+V E++S DGTRKWLLR P           EIE VYIP   RGTLC
Sbjct: 92  KAELEQVYTLDRPEVVSEQVSRDGTRKWLLRMPPTGRHDHNRGAEIECVYIPANDRGTLC 151

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC+LTCSFC+TGTQ+LVRNL+A+EI  Q+++AR  LGD+PG    +G  +P  G 
Sbjct: 152 VSSQVGCTLTCSFCHTGTQRLVRNLSAQEITAQLVVARDRLGDWPGQSPPKGTFVPVDGS 211

Query: 178 K-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           + +SN+V MGMGEPL N DNV  ++ + SD+ GL  S+RRIT+STSG VP   R+G +  
Sbjct: 212 RFVSNVVFMGMGEPLYNVDNVIDAIGVMSDNEGLGLSRRRITVSTSGVVPQFERLGIDAN 271

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            MLAISLHAV +DLRN+LVP+NRKYP+  L+DACR+YPG+SNARRITFEYVMLKG+NDS 
Sbjct: 272 AMLAISLHAVRDDLRNVLVPLNRKYPIRELLDACRNYPGVSNARRITFEYVMLKGVNDSD 331

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
            +A  L+++LKGIPAKINLIPFNPWPG  Y CSD + I  FSE +  +GY+SP+RTPRG 
Sbjct: 332 AEARELVRLLKGIPAKINLIPFNPWPGSSYECSDWERIERFSEIVFNAGYASPVRTPRGR 391

Query: 357 DILAACGQLKSLSKRIPKVPRQEMQ 381
           DILAACGQLKS ++++    R  ++
Sbjct: 392 DILAACGQLKSETEKLRARARLMLE 416


>gi|83647153|ref|YP_435588.1| Fe-S-cluster redox protein [Hahella chejuensis KCTC 2396]
 gi|123753570|sp|Q2SDW1|RLMN_HAHCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|83635196|gb|ABC31163.1| predicted Fe-S-cluster redox enzyme [Hahella chejuensis KCTC 2396]
          Length = 378

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 164/374 (43%), Positives = 231/374 (61%), Gaps = 20/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM R +LE     +G      + R +Q+ KW+Y  G+ DF  M+++S+ +R  L 
Sbjct: 7   KINLLGMNRSDLETFFESLG----EKKFRATQLMKWMYHLGVSDFDLMTNMSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   +  PE++ E IS DGTRKW++R       G   IETVYIP+  RGTLCVSSQ+GCS
Sbjct: 63  EVAEVSVPEVIYEDISADGTRKWVMRL-----AGGNSIETVYIPDNGRGTLCVSSQIGCS 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL++ EI+ Q+ +A    GD+   ++          R ++NIV M
Sbjct: 118 LDCSFCSTGKQGFNRNLSSAEIIGQLWIAARSFGDYDLSKE----------RYVTNIVFM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV ++  +  D  G   SKRR+T+STSG VP + ++G+   V LAISLHA
Sbjct: 168 GMGEPLLNFDNVVRACDVMMDDFGFGISKRRLTVSTSGLVPALDKLGDVTDVSLAISLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDALNLIK 304
            +N LR++LVP+N+KYP+E L+ AC  Y   LS+ RRIT EY ++ G+NDS   A  L  
Sbjct: 228 PNNSLRDVLVPVNKKYPIEELLAACHRYLGKLSDKRRITVEYTLIAGVNDSETHAHELRD 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ +P KINLIPFNP+P   Y    +   + F + +  +GY + +RT RG DI AACGQ
Sbjct: 288 LLRDLPCKINLIPFNPFPNSGYERPSRNATLRFQKVLSDAGYVATVRTTRGDDIDAACGQ 347

Query: 365 LKSLSKRIPKVPRQ 378
           L    +   +  ++
Sbjct: 348 LVGRVEDRTRRSQK 361


>gi|56698170|ref|YP_168542.1| radical SAM protein [Ruegeria pomeroyi DSS-3]
 gi|81348990|sp|Q5LN66|RLMN_SILPO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|56679907|gb|AAV96573.1| radical SAM enzyme, Cfr family [Ruegeria pomeroyi DSS-3]
          Length = 393

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 198/381 (51%), Positives = 267/381 (70%), Gaps = 12/381 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + +L+G+ R+ + E L+  G P++  +MR  QIW+WIY  G+RDF+ M+++++  R  L 
Sbjct: 22  RINLVGLTRDRMREVLIDHGTPEKQAKMRVGQIWQWIYQWGVRDFEAMTNLAKAYRAQLA 81

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF+I  PE++   +S DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 82  EHFTIEIPEVITRLVSEDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCT 136

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P              R +SNIV+M
Sbjct: 137 LTCSFCHTGTQKLVRNLTAAEIVGQVMMARDDLGEWPVP-----GAPKDETRLLSNIVLM 191

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ IA D  G+  S+RRITLSTSG VP IAR  EEIG +LAIS HA
Sbjct: 192 GMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 251

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R++LVPIN+++ +E L+ A   YP +SN+ RITFEYVML G+NDS  DA  L+  
Sbjct: 252 TTDEVRDVLVPINKRWNIEELLSALAAYPKVSNSERITFEYVMLDGVNDSDADAHRLLDH 311

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY++PIR  RG DI+AACG
Sbjct: 312 IRRYKIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYAAPIRKTRGDDIMAACG 371

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QLKS ++R  K  +Q    TG
Sbjct: 372 QLKSATERARKSKKQIEAETG 392


>gi|259417568|ref|ZP_05741487.1| radical SAM enzyme, Cfr family [Silicibacter sp. TrichCH4B]
 gi|259346474|gb|EEW58288.1| radical SAM enzyme, Cfr family [Silicibacter sp. TrichCH4B]
          Length = 397

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 197/381 (51%), Positives = 266/381 (69%), Gaps = 12/381 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R+ + E L++ G P++  +MR  QIW+WIY  G+R+F  M+++++  R  L 
Sbjct: 23  KINLVGLTRDRMREVLMEHGTPEKQAKMRVGQIWQWIYQWGVRNFSEMTNLAKAYRAQLE 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+
Sbjct: 83  ETFEIRIPEVVSKQVSTDGTRKYLVR-----INGGHEVEVVYIPEDDRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT  EI+ QV++AR  L ++P              R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIIGQVMMARDDLEEWPTP-----GAPKDETRLLSNIVLM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG +LAIS HA
Sbjct: 193 GMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N++R++LVPINR++ ++ L+ +  +YP +SN+ RITFEYVML G+NDS  DA  L++ 
Sbjct: 253 TTNEVRDVLVPINRRWNIDELLQSLANYPKVSNSERITFEYVMLDGVNDSDEDAHRLLEH 312

Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +K   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR  RG DI+AACG
Sbjct: 313 IKRYDIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAACG 372

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QLKS ++R  K  +Q     G
Sbjct: 373 QLKSATERARKSRKQIEAEAG 393


>gi|197106949|ref|YP_002132326.1| predicted Fe-S-cluster redox enzyme [Phenylobacterium zucineum
           HLK1]
 gi|254807192|sp|B4RCA4|RLMN_PHEZH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|196480369|gb|ACG79897.1| predicted Fe-S-cluster redox enzyme [Phenylobacterium zucineum
           HLK1]
          Length = 385

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 201/381 (52%), Positives = 273/381 (71%), Gaps = 16/381 (4%)

Query: 6   KESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           + +L GM R EL   L+++G+      +MR SQ+W+W++  G+ DF+ M+D+++E R  L
Sbjct: 19  RPNLSGMTRAELAACLVELGVVRPEKAKMRASQLWRWMHHYGVTDFEKMTDVAKETRAAL 78

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVG 123
            +  +I  P++V+ ++S DGTRKWL+R         +E+ETVYIP+  R G LCVSSQVG
Sbjct: 79  AEVCAISRPQVVERQVSKDGTRKWLIRMAP-----GIEVETVYIPDVGRAGALCVSSQVG 133

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C+FC+TGTQ LVRNLTA EI+ QV +AR  LG++P          P   R++SNIV
Sbjct: 134 CTLNCTFCHTGTQALVRNLTAAEIVAQVQVARDDLGEWPS---------PKEDRRLSNIV 184

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N DNV  ++ I +D+ G++ S+RRIT+STSG VP +A +GE    MLAISL
Sbjct: 185 FMGMGEPLYNLDNVAAAIDIIADNEGIAISRRRITVSTSGVVPELAALGERTQAMLAISL 244

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR  LVP+NRKYP+  L+ A R YPGLSN++R+TFEYVMLKG+NDSP +A  L+
Sbjct: 245 HATNDELREKLVPLNRKYPIAELMAAIRAYPGLSNSKRVTFEYVMLKGVNDSPAEAKALV 304

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+PAKINLIPFNPWPG +Y CSD   I  F+  + R+GY+SPIRTPRG DILAACG
Sbjct: 305 NLLKGVPAKINLIPFNPWPGSQYECSDWGTIERFAAVLNRAGYASPIRTPRGRDILAACG 364

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QLKS S+++    R+++   G
Sbjct: 365 QLKSESEKLRASARRKLAAGG 385


>gi|83952609|ref|ZP_00961339.1| radical SAM enzyme, Cfr family protein [Roseovarius nubinhibens
           ISM]
 gi|83835744|gb|EAP75043.1| radical SAM enzyme, Cfr family protein [Roseovarius nubinhibens
           ISM]
          Length = 395

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 203/379 (53%), Positives = 270/379 (71%), Gaps = 12/379 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+G+ R+++ + L+  G P++  +MR SQIW+WIY  G+RDF  M+++++  R  L +
Sbjct: 23  VNLVGLTRDKMRDVLIAHGTPEKQAKMRVSQIWQWIYQWGVRDFDAMTNLAKAYRAELAE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLCVSSQVGC+L
Sbjct: 83  KFVIEIPEVVSKQVSSDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQVGCTL 137

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TCSFC+TGTQKLVRNLTA EI+ QV++AR  LG++P     E        R +SNIV+MG
Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIIGQVMMARDDLGEWP-----EQGAPKDETRLLSNIVLMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NFDNV+ ++ IA D+ G+  S+RRITLSTSG VP IAR  +EIG  LAIS HA 
Sbjct: 193 MGEPLYNFDNVRDAMKIAMDAEGIQLSRRRITLSTSGVVPEIARTAQEIGCQLAISFHAT 252

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +++ RN LVPIN+++ +E L+ A   YP +SN+ RITFEYVML G+ND+  DA  LI+++
Sbjct: 253 TDETRNKLVPINKRWNIEELLQALASYPKVSNSERITFEYVMLDGVNDTDDDARRLIQMI 312

Query: 307 KG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           K   IPAKINLIPFN WPG  Y  S    I  F++ I ++GY+SPIRTPRG DI+AACGQ
Sbjct: 313 KDHAIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQ 372

Query: 365 LKSLSKRIPKVPRQEMQIT 383
           LKS ++R  K  R+    T
Sbjct: 373 LKSATERARKSRREIEAET 391


>gi|170742676|ref|YP_001771331.1| radical SAM protein [Methylobacterium sp. 4-46]
 gi|205829810|sp|B0UQR1|RLMN_METS4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|168196950|gb|ACA18897.1| radical SAM enzyme, Cfr family [Methylobacterium sp. 4-46]
          Length = 431

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 215/385 (55%), Positives = 280/385 (72%), Gaps = 4/385 (1%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M    + SL+G+ R  L E L  IG+P+R  RMRT Q+W WI VRG   F+ M+++ + +
Sbjct: 32  MVATGRPSLVGLTRGALRERLAAIGVPEREQRMRTGQLWHWINVRGAASFEAMTNVGKGL 91

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLC 117
           +  L + +++  PE+V E++S DGTRKWLLR P           EIE VYIP   RGTLC
Sbjct: 92  KAQLEEAYTLDRPEVVSEQVSRDGTRKWLLRMPPTGRHDHNRGAEIECVYIPANDRGTLC 151

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC+LTCSFC+TGTQ+LVRNL+A+EI  Q+++AR  LGD+PG    +G  +P  G 
Sbjct: 152 VSSQVGCTLTCSFCHTGTQRLVRNLSAQEITAQLVVARDRLGDWPGQVPPKGTFVPVDGS 211

Query: 178 K-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           + +SNIV MGMGEPL N DNV  ++ + SD+ GL  S+RRIT+STSG VP   R+G +  
Sbjct: 212 RFVSNIVFMGMGEPLYNVDNVVDAVGVMSDNEGLGLSRRRITVSTSGVVPQFERLGIDAN 271

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            MLAISLHAV +DLR+ LVP+NRKYP+  L++ACR+YPG+SNARRITFEYVMLKG+NDS 
Sbjct: 272 AMLAISLHAVRDDLRDELVPLNRKYPIRTLLEACRNYPGVSNARRITFEYVMLKGVNDSD 331

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
            +A  L+++LKGIPAKINLIPFNPWPG  Y CSD + I  FSE +  +GY+SP+RTPRG 
Sbjct: 332 SEARELVRLLKGIPAKINLIPFNPWPGSRYECSDWERIERFSEIVFNAGYASPVRTPRGR 391

Query: 357 DILAACGQLKSLSKRIPKVPRQEMQ 381
           DILAACGQLKS ++++    R  ++
Sbjct: 392 DILAACGQLKSETEKLRARARLMLE 416


>gi|84500532|ref|ZP_00998781.1| radical SAM superfamily protein [Oceanicola batsensis HTCC2597]
 gi|84391485|gb|EAQ03817.1| radical SAM superfamily protein [Oceanicola batsensis HTCC2597]
          Length = 398

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 202/370 (54%), Positives = 275/370 (74%), Gaps = 10/370 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +++G+ RE L +AL+ +G P++  RMR +Q+W+WIY  G+RDF  M++++++ R  L 
Sbjct: 24  KPNIVGLTREALRQALIDMGTPEKQARMRVNQVWQWIYHWGVRDFSQMTNLARDYRGKLT 83

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V +++S DGTRK+L+R     I G  E+ETVYIPE  RGTLC+SSQVGC+
Sbjct: 84  ETFRIDLPEMVSKQVSADGTRKYLMR-----IAGGHEVETVYIPEADRGTLCISSQVGCT 138

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ+LVRNL+A+EI+ Q+++AR  LG++P              R +SNIV+M
Sbjct: 139 LTCSFCHTGTQRLVRNLSADEIVGQIMVARDDLGEWPVP-----GAPKREERLLSNIVLM 193

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ IA D  G+S S+RRITLSTSG VP IAR  EEIG +LA+S HA
Sbjct: 194 GMGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIARCAEEIGCLLAVSFHA 253

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ LVPIN+++ +E L+ A R YP LSN+ RITFEYVMLK +NDS  DA  L+K+
Sbjct: 254 TTDEVRDRLVPINKRWNIETLLTALRDYPRLSNSERITFEYVMLKDVNDSDADARRLVKL 313

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           + GIPAKINLIPFN WPG  Y  SD   I +F++ + ++GY+SPIRTPRG DI+AACGQL
Sbjct: 314 ISGIPAKINLIPFNEWPGAPYERSDWSRIESFADIVHKAGYASPIRTPRGEDIMAACGQL 373

Query: 366 KSLSKRIPKV 375
           KS ++R  K 
Sbjct: 374 KSATERERKS 383


>gi|126738619|ref|ZP_01754324.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. SK209-2-6]
 gi|126720418|gb|EBA17124.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. SK209-2-6]
          Length = 396

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 198/381 (51%), Positives = 266/381 (69%), Gaps = 12/381 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R+++ E L++ G P++  +MR  QIW+WIY  G RDF  M+++++  R  L+
Sbjct: 23  KINLVGLTRDKMREVLIEHGTPEKQAKMRVGQIWQWIYQWGKRDFADMTNLAKAYRAQLD 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 83  EHFEIRIPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT  E++ QV++AR  L ++P              R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTPGEVIGQVMMARDDLEEWPIP-----GAPKDETRLLSNIVLM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV+ ++ IA D  G+  S+RRITLSTSG VP IAR  +EIG +LAIS HA
Sbjct: 193 GMGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAQEIGCLLAISFHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +ND+R++LVPIN+++ ++ L+ A   YP  SN+ RITFEYVMLK +NDS  DA  LI+ 
Sbjct: 253 TTNDVRDVLVPINKRWNIDALLQALADYPKASNSERITFEYVMLKDVNDSDEDAHRLIEH 312

Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +K   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR  RG DI+AACG
Sbjct: 313 IKRYNIPAKINLIPFNEWPGSPYQRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAACG 372

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QLKS ++R  K  +Q     G
Sbjct: 373 QLKSATERARKSRKQIEAEAG 393


>gi|157961130|ref|YP_001501164.1| ribosomal RNA large subunit methyltransferase N [Shewanella
           pealeana ATCC 700345]
 gi|205829883|sp|A8H242|RLMN_SHEPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157846130|gb|ABV86629.1| radical SAM enzyme, Cfr family [Shewanella pealeana ATCC 700345]
          Length = 373

 Score =  474 bits (1221), Expect = e-132,   Method: Composition-based stats.
 Identities = 165/385 (42%), Positives = 225/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L     ++G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKALRALFTEMG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRAKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AAKCEIVAPEISSYQKSVDGTIKFAI-----NVGDGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      +G           V  +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVAEIVGQIWRVADFIG----------FVKDTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDVLDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR++LVP+N+KYPLE  +   R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   Q+ QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKQMQQNQIS 369


>gi|260574031|ref|ZP_05842036.1| radical SAM enzyme, Cfr family [Rhodobacter sp. SW2]
 gi|259023497|gb|EEW26788.1| radical SAM enzyme, Cfr family [Rhodobacter sp. SW2]
          Length = 429

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 199/371 (53%), Positives = 267/371 (71%), Gaps = 10/371 (2%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +++G+ R++L  AL+  G P+R  +MR  Q+W+W+Y  G RDF  MS+++++ R  L 
Sbjct: 23  KINIVGLTRDQLHAALVAAGTPERQAKMRVGQVWQWVYHWGKRDFALMSNLAKDYRAFLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  P++V  ++S DGTRK+L+R     I G  E+E VYIPE  RGTLC+SSQVGC+
Sbjct: 83  EHFVIELPQVVTRQLSDDGTRKYLVR-----IAGGHEVEVVYIPEDGRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTC+FC+TGTQ LVRNLTA EI+ QV+LAR  LG++P              R ISN+V+M
Sbjct: 138 LTCTFCHTGTQVLVRNLTAAEIVGQVMLARDDLGEWP-----VQGAPKDETRLISNVVLM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ +  D+ G++  +RRITLSTSG VP IAR   EIG +LA+SLHA
Sbjct: 193 GMGEPLYNFDNVRDAMKVVMDNEGIALGRRRITLSTSGVVPEIARTAREIGCLLAVSLHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ LVPINRK+ +  L+D  R YPGL+N+ RITFEYVML+G+NDS  DA  L+++
Sbjct: 253 TTDEVRDKLVPINRKWNIAALMDELRAYPGLTNSERITFEYVMLQGVNDSKEDAYRLVEL 312

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGIPAKINLIPFN WPG  Y  S    I  F++ I  +GY+SPIRTPRG DI+AACGQL
Sbjct: 313 IKGIPAKINLIPFNEWPGAPYKRSSGNRIHAFADIIYNAGYASPIRTPRGEDIMAACGQL 372

Query: 366 KSLSKRIPKVP 376
           KS ++R  K  
Sbjct: 373 KSATERARKSR 383


>gi|167623296|ref|YP_001673590.1| ribosomal RNA large subunit methyltransferase N [Shewanella
           halifaxensis HAW-EB4]
 gi|205829881|sp|B0TLI1|RLMN_SHEHH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|167353318|gb|ABZ75931.1| radical SAM enzyme, Cfr family [Shewanella halifaxensis HAW-EB4]
          Length = 373

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 166/385 (43%), Positives = 225/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L     ++G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKALRVLFTEMG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRAKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AAKCEIVAPEISSYQKSVDGTIKFAI-----NVGDGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      +G           V  +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVAEIVGQIWRVADFIG----------FVKDTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR++LVP+N+KYPLE  +   R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKQMQESQIS 369


>gi|315497788|ref|YP_004086592.1| radical sam enzyme, cfr family [Asticcacaulis excentricus CB 48]
 gi|315415800|gb|ADU12441.1| radical SAM enzyme, Cfr family [Asticcacaulis excentricus CB 48]
          Length = 411

 Score =  473 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 205/381 (53%), Positives = 276/381 (72%), Gaps = 16/381 (4%)

Query: 6   KESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           K ++ G+ R+ L  AL + G+  +R  +MR  QIW+W++  G  DF  M+DI ++ R  L
Sbjct: 16  KVNITGLTRDGLIAALKESGVVEERKAKMRAQQIWRWVHHYGFTDFDKMTDIGKDQRGPL 75

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVG 123
           ++ F++  PE+V+ ++S DGTRKWL+R         +E+ETVYIP+  R G LCVSSQVG
Sbjct: 76  SEKFTLARPEVVERQVSKDGTRKWLIRMAP-----GIEVETVYIPDVGRSGALCVSSQVG 130

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L CSFC+TGTQ+LVRNLTA EI+ QV +AR  LG++P          P   R++SNIV
Sbjct: 131 CTLNCSFCHTGTQRLVRNLTAAEIVAQVQVARDDLGEWPS---------PKEDRRLSNIV 181

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N DNV  ++ I SD+ G++ S+RRIT+STSG VP +  +G+    MLAISL
Sbjct: 182 FMGMGEPLYNLDNVADAIDIISDNEGIAISRRRITVSTSGVVPELDALGKRTAAMLAISL 241

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR++LVPIN+KYPL+ L+ A R YP LSNARR+TFEYVMLKG+NDSP +A  LI
Sbjct: 242 HATNDELRDVLVPINKKYPLKDLMAAIRAYPDLSNARRVTFEYVMLKGVNDSPAEARELI 301

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K++KGIPAKINLIPFNPWPG +Y CSD + I  F+  + ++GY+SPIRTPRG DILAACG
Sbjct: 302 KLIKGIPAKINLIPFNPWPGTDYQCSDWRTIEAFAAILNKAGYASPIRTPRGRDILAACG 361

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QLKS S+++     ++ Q+ G
Sbjct: 362 QLKSESEKVRASALRKAQVEG 382


>gi|296534699|ref|ZP_06897089.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957]
 gi|296264972|gb|EFH11207.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957]
          Length = 409

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/373 (52%), Positives = 255/373 (68%), Gaps = 18/373 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ REEL   ++ IG        R  Q+W WIY +G+ DF  MS I++ ++  L 
Sbjct: 41  RRDLVGLSREELVAEMVAIG----EKPFRAKQLWHWIYHQGVTDFSQMSTIAKAMQGKLA 96

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVG 123
           + F +  P +  E+ S DGTRKWL  F         ++ETVYIP  E+ RG +CVS+QVG
Sbjct: 97  ERFVVGRPGVTTEQTSTDGTRKWLFGFRD-----GQQVETVYIPDPEEDRGAVCVSTQVG 151

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C FC+TGTQKLVRNL A EI+ Q + AR   G++P   D          R +S IV
Sbjct: 152 CTLSCKFCHTGTQKLVRNLGAAEIVGQFMAARDSYGEWPSPTD-------GTPRLLSTIV 204

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++NV K++ I  D  G++ S+RRITLSTSG VP + R G E+GV LA+SL
Sbjct: 205 IMGMGEPLYNYENVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGAELGVGLAVSL 264

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV ND+R+ +VP+NRKYP+E L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  L+
Sbjct: 265 HAVRNDIRDEIVPLNRKYPIEELMAACRRYPGASNARRITFEYVMLKGVNDSEADARELV 324

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L+GIPAK+NLIPFNPWPG  Y  S    I  F+  ++ +GY+SPIRTPRG DILAACG
Sbjct: 325 RLLQGIPAKVNLIPFNPWPGSPYETSSNNAIHRFARIVQEAGYASPIRTPRGRDILAACG 384

Query: 364 QLKSLSKRIPKVP 376
           QLK+ S+R  +  
Sbjct: 385 QLKTESERAKRQR 397


>gi|288957012|ref|YP_003447353.1| radical SAM enzyme [Azospirillum sp. B510]
 gi|288909320|dbj|BAI70809.1| radical SAM enzyme [Azospirillum sp. B510]
          Length = 396

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 211/368 (57%), Positives = 268/368 (72%), Gaps = 18/368 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +++L+G+ REELE  +L +G+     + R  Q+W WIY RG  DF  M+ +++ VR  L 
Sbjct: 27  RKNLVGLSREELEAEMLAVGLE----KFRARQLWHWIYHRGSTDFAEMTTLAKPVREKLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  P +V +  S DGTRKWLLR P        E+E+V+IPE+ RGTLCVSSQVGC+
Sbjct: 83  DTHIVARPTVVTDLKSADGTRKWLLRMPD-----GQEVESVHIPEEDRGTLCVSSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTC FC+TGTQ+LVRNL A EI+ QV+LAR +LG++P          P  GR +SNIVMM
Sbjct: 138 LTCRFCHTGTQRLVRNLDAAEIVAQVMLARDMLGEWPA---------PPDGRMLSNIVMM 188

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N+DNV K+L I  D  G+S SKRRITLSTSG VP + R G+E+ V LA+SLHA
Sbjct: 189 GMGEPLFNYDNVAKALKIVMDGDGISISKRRITLSTSGVVPMMERCGQELNVNLAVSLHA 248

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V+++LRNI++PINRKYPL  L++ACR YPGLSNARRITFEYVMLKG+ND+P DA  L+K+
Sbjct: 249 VTDELRNIIMPINRKYPLRELMEACRTYPGLSNARRITFEYVMLKGVNDTPADARALVKL 308

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+GIPAKINLIPFN WPG  Y  S  + I  F + +  +GY+SP+RTPRG DI+AACGQL
Sbjct: 309 LEGIPAKINLIPFNEWPGAPYERSTARAIQLFGDIVNNAGYASPVRTPRGEDIMAACGQL 368

Query: 366 KSLSKRIP 373
           KS S R+ 
Sbjct: 369 KSASLRLT 376


>gi|83594658|ref|YP_428410.1| hypothetical protein Rru_A3329 [Rhodospirillum rubrum ATCC 11170]
 gi|123753053|sp|Q2RP22|RLMN_RHORT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|83577572|gb|ABC24123.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 428

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 197/378 (52%), Positives = 250/378 (66%), Gaps = 17/378 (4%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+G+ REE+   L  +G        R  Q+W W+Y RG  DF  M+ +   +R  L +
Sbjct: 48  VNLVGLSREEIAALLRDMG----EKPFRAKQLWHWVYHRGETDFSAMTTLGTPLRAKLAE 103

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +  P +V E+ S DGTRKWLLRFP        E ETVYIPE  RG LCVSSQVGC+L
Sbjct: 104 TCVVARPHVVREQRSEDGTRKWLLRFPD-----GNEAETVYIPEDDRGALCVSSQVGCTL 158

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TC FC+TGTQ LVRNLTA EI+ Q + AR   G++P   D          R++SNIV+MG
Sbjct: 159 TCRFCHTGTQLLVRNLTAHEIVGQFMAARDAYGEWPSPTD--------ESRQLSNIVLMG 210

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+DNV K++ I  D+ G++ S+RRITLSTSG VP I R G E+GV LA+SLHA 
Sbjct: 211 MGEPLYNYDNVAKAIGILLDNEGIAVSRRRITLSTSGVVPMIRRCGAELGVNLAVSLHAA 270

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            +++R+ ++PINRKYPL  L+ ACR YPG SNARRITFEYVMLKG+NDS  DA  LIK++
Sbjct: 271 RDEIRDEIMPINRKYPLAELMAACREYPGASNARRITFEYVMLKGVNDSEADARALIKLV 330

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +G+P K NLIPFNPWPG  + C   + I  F+  +  +GY++PIR PRG DILAACGQL+
Sbjct: 331 EGVPCKFNLIPFNPWPGSGFECPPIRHIERFANILFEAGYTAPIRMPRGRDILAACGQLR 390

Query: 367 SLSKRIPKVPRQEMQITG 384
           S S R      +     G
Sbjct: 391 SDSLRERASLHKARLAAG 408


>gi|113969569|ref|YP_733362.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
           MR-4]
 gi|122943998|sp|Q0HKW2|RLMN_SHESM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|113884253|gb|ABI38305.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-4]
          Length = 373

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 164/385 (42%), Positives = 223/385 (57%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSYQKSADGTIKFAI-----HVGEGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG              +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL+  +   R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|194432102|ref|ZP_03064391.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
 gi|194419631|gb|EDX35711.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
 gi|332089738|gb|EGI94839.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
          Length = 384

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYERSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|119713561|gb|ABL97613.1| radical SAM superfamily protein [uncultured marine bacterium
           EB0_39F01]
          Length = 390

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 206/376 (54%), Positives = 278/376 (73%), Gaps = 13/376 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            ++IG+ R+ L  AL +IG P + ++MRT+QIW+W+YV+G ++F+ M+++S++ R+LL Q
Sbjct: 24  PNIIGLQRKALANALNEIGTPAKQIKMRTAQIWQWLYVKGAQNFEEMTNLSKDFRNLLVQ 83

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +F+I  PEIV  +IS DGTRK+LLR     + G  E+E VYIPEK RGTLC+SSQ+GC+L
Sbjct: 84  NFAITRPEIVTRQISKDGTRKYLLR-----VTGGHEVEAVYIPEKDRGTLCISSQIGCTL 138

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TC+FC+TGTQKLVRNLT  EI+ Q+L+AR  L ++               R +SNIV+MG
Sbjct: 139 TCTFCHTGTQKLVRNLTPAEIVGQILIARDDLDEWGKDA--------GQKRNVSNIVLMG 190

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N DNV+ ++ IA D+ G++ S+RRITLSTSG VP I R G EIG MLAIS HA 
Sbjct: 191 MGEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGVVPEIIRTGSEIGCMLAISFHAT 250

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++++R++LVPINRK+ +  L++ACR+YP LSN+ RITFEYVMLK INDS  DA  L+ ++
Sbjct: 251 TDEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITFEYVMLKNINDSDEDARRLVDLI 310

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            GIPAKINLIPFNPWPG  Y  SD   I  F + + ++GY+SPIR PRG DI+AACGQLK
Sbjct: 311 SGIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKAGYASPIRRPRGEDIMAACGQLK 370

Query: 367 SLSKRIPKVPRQEMQI 382
           S ++R+ K  +Q  + 
Sbjct: 371 SETQRVRKSAKQMAEE 386


>gi|120598175|ref|YP_962749.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
           W3-18-1]
 gi|120558268|gb|ABM24195.1| radical SAM enzyme, Cfr family [Shewanella sp. W3-18-1]
          Length = 399

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 166/385 (43%), Positives = 223/385 (57%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 30  KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 85

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 86  AARCEIVAPEISSFQKSTDGTIKFAI-----HVGEGQEVETVYIPEDDRATLCVSSQVGC 140

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG      D          R I+N+VM
Sbjct: 141 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGD----------RPITNVVM 190

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 191 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 250

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL+  +   R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 251 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 310

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 311 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 370

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 371 GQLAGDIRDRTKRLAKKRMQENQIS 395


>gi|260869206|ref|YP_003235608.1| putative enzyme [Escherichia coli O111:H- str. 11128]
 gi|257765562|dbj|BAI37057.1| predicted enzyme [Escherichia coli O111:H- str. 11128]
 gi|323177359|gb|EFZ62947.1| hypothetical protein ECOK1180_3845 [Escherichia coli 1180]
          Length = 384

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRDKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|114046802|ref|YP_737352.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
           MR-7]
 gi|123326715|sp|Q0HX60|RLMN_SHESR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|113888244|gb|ABI42295.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-7]
          Length = 373

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 164/385 (42%), Positives = 223/385 (57%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSYQKSTDGTIKFAI-----HVGEGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG              +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL+  +   R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|332639897|pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli
 gi|332639898|pdb|3RF9|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli
          Length = 404

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|205829898|sp|A1RHQ0|RLMN_SHESW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|319427125|gb|ADV55199.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens 200]
          Length = 373

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 166/385 (43%), Positives = 223/385 (57%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSFQKSTDGTIKFAI-----HVGEGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG      D          R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGD----------RPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL+  +   R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|117919675|ref|YP_868867.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
           ANA-3]
 gi|205829885|sp|A0KUJ2|RLMN_SHESA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|117612007|gb|ABK47461.1| radical SAM enzyme, Cfr family [Shewanella sp. ANA-3]
          Length = 373

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 164/385 (42%), Positives = 223/385 (57%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSYQKSTDGTIKFAI-----HVGEGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG              +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKETGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL+  +   R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|220935219|ref|YP_002514118.1| radical SAM protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996529|gb|ACL73131.1| radical SAM protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 376

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 176/384 (45%), Positives = 230/384 (59%), Gaps = 20/384 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M    K +L+GM R++LE     +G        R  Q+ KWI+   + DFQ M+D+S+ +
Sbjct: 1   MTDSPKTNLLGMTRQQLEGFFTAMG----EKPFRAVQVLKWIHQHWVEDFQDMTDLSKAL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L Q   I  PE+V ++ S DGT KWLLR           IETV+IPEK RGTLCVSS
Sbjct: 57  RERLAQVAEIRAPEVVYDQASADGTHKWLLRL-----DDGNCIETVFIPEKDRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C+FC T  Q   RNL++ EI+ Q+ LA               +   +  R +S
Sbjct: 112 QVGCALDCTFCSTARQGFNRNLSSAEIVGQLWLANR------RLAPERTVAGKAPERVVS 165

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V+MGMGEPL NFDNV  ++ +  D      SKRR+TLSTSG VP + R+ E + V LA
Sbjct: 166 NVVLMGMGEPLLNFDNVVDAMRLMLDDNAYGLSKRRVTLSTSGIVPAMDRLKETLDVALA 225

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDA 299
           +SLHA ++ LR+ LVPINRKYP+  L+DACR Y     + +RITFEYVML+G+NDSP  A
Sbjct: 226 VSLHAPNDALRDELVPINRKYPIAELLDACRRYVREERHHQRITFEYVMLEGVNDSPEHA 285

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             LI +L+ +P KINLIPFNP+P   Y  S    I  F E +  +GY++  R  RG DI 
Sbjct: 286 RQLIALLRDVPCKINLIPFNPFPETRYRRSGDAAIRRFQEMLANAGYTTITRRTRGDDID 345

Query: 360 AACGQL----KSLSKRIPKVPRQE 379
           AACGQL       S+R  +  R E
Sbjct: 346 AACGQLVGKVADRSRRALRFARLE 369


>gi|114769816|ref|ZP_01447426.1| radical SAM superfamily protein [alpha proteobacterium HTCC2255]
 gi|114549521|gb|EAU52403.1| radical SAM superfamily protein [alpha proteobacterium HTCC2255]
          Length = 390

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 206/376 (54%), Positives = 278/376 (73%), Gaps = 13/376 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            ++IG+ R+ L  AL +IG P + ++MRT+QIW+W+YV+G ++F+ M+++S++ R+LL Q
Sbjct: 24  PNIIGLQRKALANALNEIGTPAKQIKMRTAQIWQWLYVKGAQNFEEMTNLSKDFRNLLVQ 83

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +F+I  PEIV  +IS DGTRK+LLR     + G  E+E VYIPEK RGTLC+SSQ+GC+L
Sbjct: 84  NFAITRPEIVTRQISKDGTRKYLLR-----VTGGHEVEAVYIPEKDRGTLCISSQIGCTL 138

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TC+FC+TGTQKLVRNLT  EI+ Q+L+AR  L ++               R +SNIV+MG
Sbjct: 139 TCTFCHTGTQKLVRNLTPAEIVGQILIARDDLDEWGKDA--------GQKRNVSNIVLMG 190

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N DNV+ ++ IA D+ G++ S+RRITLSTSG VP I R G EIG MLAIS HA 
Sbjct: 191 MGEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGVVPEIIRTGSEIGCMLAISFHAT 250

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++++R++LVPINRK+ +  L++ACR+YP LSN+ RITFEYVMLK INDS  DA  L+ ++
Sbjct: 251 TDEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITFEYVMLKNINDSDEDARRLVDLI 310

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            GIPAKINLIPFNPWPG  Y  SD   I  F + + ++GY+SPIR PRG DI+AACGQLK
Sbjct: 311 SGIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKAGYASPIRRPRGEDIMAACGQLK 370

Query: 367 SLSKRIPKVPRQEMQI 382
           S ++R+ K  +Q  + 
Sbjct: 371 SETQRVRKSAKQMAEE 386


>gi|16124389|ref|NP_418953.1| hypothetical protein CC_0134 [Caulobacter crescentus CB15]
 gi|221233072|ref|YP_002515508.1| radical SAM family enzyme [Caulobacter crescentus NA1000]
 gi|81621310|sp|Q9ABT6|RLMN_CAUCR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807161|sp|B8GXM4|RLMN_CAUCN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|13421243|gb|AAK22121.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220962244|gb|ACL93600.1| radical SAM family enzyme [Caulobacter crescentus NA1000]
          Length = 404

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 197/380 (51%), Positives = 269/380 (70%), Gaps = 16/380 (4%)

Query: 7   ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
            +L G+ R +L  AL++ G+      +MR +QI++W++ RG+ DF  MSD+++E R  L 
Sbjct: 25  INLSGLTRPQLVAALVESGVVEHGKAKMRATQIFRWMHHRGVTDFADMSDVAKETRARLA 84

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
           + F+I  PEIV+ ++S DGTRKWL+R         +E+E+VYIP   R G LCVSSQVGC
Sbjct: 85  EAFTIARPEIVERQVSKDGTRKWLIRMAP-----GIEVESVYIPGVGRAGALCVSSQVGC 139

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ LVRNLTA EI+ QV +A+  L ++P  ++          R++SNIV 
Sbjct: 140 TLNCSFCHTGTQPLVRNLTAAEIVAQVQVAKDDLAEWPSDKE---------DRQLSNIVF 190

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N   V  ++ I SD+ G++ S+RRIT+STSG VP + ++G     MLAISLH
Sbjct: 191 MGMGEPLYNLGQVADAIEIISDNEGIAISRRRITVSTSGVVPMLEKLGSTTQAMLAISLH 250

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR++LVP+N+KYP+  L+   R YPGLSNARR+TFEYVMLKG+NDSP +A  L+K
Sbjct: 251 ATNDPLRDVLVPLNKKYPIAELMAGIRAYPGLSNARRVTFEYVMLKGVNDSPEEARALVK 310

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KGIPAKINLIPFNPWPG +Y CSD   I  F+  + ++GYSSPIRTPRG DILAACGQ
Sbjct: 311 LIKGIPAKINLIPFNPWPGSDYQCSDWATIEAFAAILNKAGYSSPIRTPRGRDILAACGQ 370

Query: 365 LKSLSKRIPKVPRQEMQITG 384
           LKS S+++     +++ +  
Sbjct: 371 LKSESEKVRASALRKLSLAA 390


>gi|329890963|ref|ZP_08269306.1| radical SAM superfamily protein [Brevundimonas diminuta ATCC 11568]
 gi|328846264|gb|EGF95828.1| radical SAM superfamily protein [Brevundimonas diminuta ATCC 11568]
          Length = 387

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 205/379 (54%), Positives = 273/379 (72%), Gaps = 16/379 (4%)

Query: 7   ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
            +L G+ R+EL +AL+   I P    +MR SQ+W+WI+  G+ DF  MSD++++ R  L 
Sbjct: 18  VNLSGLTRDELRQALIDAEICPPEKAKMRASQVWRWIHHYGVTDFALMSDVAKDTRAKLA 77

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
           + F++  PEIV+ ++S DGTRKWL+R         +EIETVYIP+  R G LCVSSQVGC
Sbjct: 78  EAFTLARPEIVERQVSKDGTRKWLIRTAP-----GIEIETVYIPDVGRAGALCVSSQVGC 132

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQKLVRNLT  EI+ QV +AR  L ++P          P   R++SNIV 
Sbjct: 133 TLNCTFCHTGTQKLVRNLTTAEIVAQVQVARDDLDEWPS---------PKEDRRLSNIVF 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N D+V  ++ I SD+ G++ S+RRIT+STSG VP +  +GE    MLAISLH
Sbjct: 184 MGMGEPLYNLDHVANAIDIISDNEGIALSRRRITVSTSGVVPQLNALGERTAAMLAISLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR+ LVP+N+KYPL+ L+ A R YPGLSNARR+TFEYVMLKG+NDSP +A  LIK
Sbjct: 244 ATNDPLRDQLVPLNKKYPLDQLMAAIRAYPGLSNARRVTFEYVMLKGVNDSPAEARALIK 303

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +++GIP+K+NLIPFNPWPG +Y CSD K I TF+  + ++GY+SPIRTPRG DILAACGQ
Sbjct: 304 LIEGIPSKVNLIPFNPWPGTDYQCSDWKTIETFAAILNKAGYASPIRTPRGRDILAACGQ 363

Query: 365 LKSLSKRIPKVPRQEMQIT 383
           LKS S+++    R + +  
Sbjct: 364 LKSESEKLRASARLKAERE 382


>gi|83945705|ref|ZP_00958050.1| hypothetical protein OA2633_10954 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850906|gb|EAP88766.1| hypothetical protein OA2633_10954 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 391

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 196/368 (53%), Positives = 266/368 (72%), Gaps = 16/368 (4%)

Query: 7   ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
            +L+GM R +L +AL++ G+  ++  +MR  Q+W+WIY  G+ +F  M+++S+++R  L 
Sbjct: 18  IALVGMTRPQLRDALVEHGLVDEKKAKMRAEQLWRWIYHYGVTEFDQMTNVSKDLRQQLE 77

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
             F++  PEI + ++S DGTRK+L+R  +      VE+ETV+IP  +R G LCVSSQVGC
Sbjct: 78  AKFTLARPEITERQVSVDGTRKYLIRMAS-----GVEVETVFIPAVARSGALCVSSQVGC 132

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ LVRNLTA EI+ QV++AR  LG++P   +          R+I+NIV 
Sbjct: 133 TLNCTFCHTGTQPLVRNLTAAEIVAQVMIARDDLGEWPTSNE---------DRQITNIVF 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N D+V  S+ + SD  G+   +RR T+STSG VP I  +GE    MLAISLH
Sbjct: 184 MGMGEPLYNLDHVSDSIDVISDHEGIGIGRRRTTVSTSGVVPKIPELGERTRSMLAISLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++LRN LVP+N+KYP+  L+DA R YP LSN++R+TFEYVMLKG+NDS  +A  L+K
Sbjct: 244 ATNDELRNELVPLNKKYPIAELMDAIRAYPDLSNSKRVTFEYVMLKGVNDSLAEARALVK 303

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG  Y CSD   I  F++ + R+GY+SPIRTPRG DI AACGQ
Sbjct: 304 LLKGIPAKINLIPFNPWPGSPYECSDWDQIEAFADVVNRAGYASPIRTPRGRDIFAACGQ 363

Query: 365 LKSLSKRI 372
           LKS S++I
Sbjct: 364 LKSESQKI 371


>gi|127512219|ref|YP_001093416.1| hypothetical protein Shew_1287 [Shewanella loihica PV-4]
 gi|205829882|sp|A3QCF9|RLMN_SHELP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|126637514|gb|ABO23157.1| radical SAM enzyme, Cfr family [Shewanella loihica PV-4]
          Length = 373

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 163/385 (42%), Positives = 225/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L     ++G        R  Q+ KW+Y  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWLYHFGVSDFEQMTNINKVLRAKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                ++ PEI   + S DGT K+ +      +G   E+ETVYIPE+ R TLCVSSQVGC
Sbjct: 60  AARCEVVAPEISSYQKSADGTIKFAI-----NVGNGQEVETVYIPEEDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG              +  R ISN+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FQKETGERPISNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+T+STSG VP +  +G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVMPAIDIMLDDFGFSLSKRRVTVSTSGVVPALDILGDNLDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR++LVP+N+KYPL+  + A R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDVLVPVNKKYPLQEFLAAIRRYLAKSNANRGRVTLEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AELMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   Q+ QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQDSQIS 369


>gi|260598903|ref|YP_003211474.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
           turicensis z3032]
 gi|260218080|emb|CBA32831.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
           turicensis z3032]
          Length = 388

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 161/380 (42%), Positives = 217/380 (57%), Gaps = 23/380 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E    +G        R  Q+ KW+Y     DF  M+DI++ +R  L
Sbjct: 20  EKINLLDLNRQEMREFFKTLG----EKPFRADQVMKWMYHYCSDDFDEMTDINKVLRGKL 75

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC
Sbjct: 76  KEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 130 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 179

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L
Sbjct: 240 APNDEIRDEIVPINKKYNIETFLAAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQL 299

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 300 AELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAC 359

Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
           GQL      R  +  R+ MQ
Sbjct: 360 GQLAGDVIDRTKRTMRKRMQ 379


>gi|91792611|ref|YP_562262.1| hypothetical protein Sden_1253 [Shewanella denitrificans OS217]
 gi|123356968|sp|Q12PT7|RLMN_SHEDO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|91714613|gb|ABE54539.1| conserved hypothetical protein [Shewanella denitrificans OS217]
          Length = 373

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 169/385 (43%), Positives = 226/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L     ++G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRSKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AERCVIVAPEIASFQKSADGTIKFAI-----NVGQGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG Q   RNLT  EI+ Q+      LG           V  +  R I+N+VM
Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVAQFLG----------FVKTTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP +  +G+ I V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDSIDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL   +   R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPVNKKYPLAEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|218548046|ref|YP_002381837.1| ribosomal RNA large subunit methyltransferase N [Escherichia
           fergusonii ATCC 35469]
 gi|254807182|sp|B7LKC1|RLMN_ESCF3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|218355587|emb|CAQ88198.1| putative Fe-S containing enzyme [Escherichia fergusonii ATCC 35469]
 gi|324113011|gb|EGC06987.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253]
 gi|325496450|gb|EGC94309.1| ribosomal RNA large subunit methyltransferase N [Escherichia
           fergusonii ECD227]
          Length = 384

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|170767629|ref|ZP_02902082.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
 gi|170123963|gb|EDS92894.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
          Length = 384

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|16130442|ref|NP_417012.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia
           coli str. K-12 substr. MG1655]
 gi|74313043|ref|YP_311462.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
           Ss046]
 gi|82544966|ref|YP_408913.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
           Sb227]
 gi|82777902|ref|YP_404251.1| hypothetical protein SDY_2713 [Shigella dysenteriae Sd197]
 gi|89109323|ref|AP_003103.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
 gi|91211843|ref|YP_541829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           UTI89]
 gi|110642682|ref|YP_670412.1| hypothetical protein ECP_2522 [Escherichia coli 536]
 gi|117624746|ref|YP_853659.1| hypothetical protein APECO1_4007 [Escherichia coli APEC O1]
 gi|157157838|ref|YP_001463839.1| hypothetical protein EcE24377A_2801 [Escherichia coli E24377A]
 gi|170019200|ref|YP_001724154.1| hypothetical protein EcolC_1160 [Escherichia coli ATCC 8739]
 gi|170082127|ref|YP_001731447.1| hypothetical protein ECDH10B_2683 [Escherichia coli str. K-12
           substr. DH10B]
 gi|170683806|ref|YP_001744705.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           SMS-3-5]
 gi|187731368|ref|YP_001881308.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
           CDC 3083-94]
 gi|188491812|ref|ZP_02999082.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
 gi|191167679|ref|ZP_03029488.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
 gi|191172618|ref|ZP_03034157.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
 gi|193064109|ref|ZP_03045194.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
 gi|194427328|ref|ZP_03059878.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
 gi|194437563|ref|ZP_03069659.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
 gi|209919994|ref|YP_002294078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           SE11]
 gi|215487867|ref|YP_002330298.1| hypothetical protein E2348C_2800 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218555042|ref|YP_002387955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           IAI1]
 gi|218559443|ref|YP_002392356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           S88]
 gi|218690637|ref|YP_002398849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           ED1a]
 gi|218696144|ref|YP_002403811.1| hypothetical protein EC55989_2802 [Escherichia coli 55989]
 gi|218701027|ref|YP_002408656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           IAI39]
 gi|237705027|ref|ZP_04535508.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
           3_2_53FAA]
 gi|238901682|ref|YP_002927478.1| putative enzyme [Escherichia coli BW2952]
 gi|253772589|ref|YP_003035420.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162491|ref|YP_003045599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli B
           str. REL606]
 gi|256017335|ref|ZP_05431200.1| hypothetical protein ShiD9_00370 [Shigella sp. D9]
 gi|256021797|ref|ZP_05435662.1| hypothetical protein E4_00375 [Escherichia sp. 4_1_40B]
 gi|260845147|ref|YP_003222925.1| putative enzyme [Escherichia coli O103:H2 str. 12009]
 gi|260856611|ref|YP_003230502.1| putative enzyme [Escherichia coli O26:H11 str. 11368]
 gi|293410931|ref|ZP_06654507.1| cfr family radical SAM enzyme [Escherichia coli B354]
 gi|293446870|ref|ZP_06663292.1| cfr family radical SAM enzyme [Escherichia coli B088]
 gi|300817713|ref|ZP_07097928.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
 gi|300820813|ref|ZP_07100963.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
 gi|300904309|ref|ZP_07122166.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
 gi|300927120|ref|ZP_07142868.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
 gi|300930157|ref|ZP_07145578.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
 gi|300940232|ref|ZP_07154830.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
 gi|300951778|ref|ZP_07165593.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
 gi|300958853|ref|ZP_07170961.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
 gi|300998073|ref|ZP_07181933.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
 gi|301022377|ref|ZP_07186264.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
 gi|301024749|ref|ZP_07188389.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
 gi|301302874|ref|ZP_07209002.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
 gi|301330392|ref|ZP_07223034.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
 gi|301648272|ref|ZP_07248015.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
 gi|306814413|ref|ZP_07448575.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           NC101]
 gi|307139152|ref|ZP_07498508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           H736]
 gi|307312488|ref|ZP_07592121.1| radical SAM enzyme, Cfr family [Escherichia coli W]
 gi|309784732|ref|ZP_07679365.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
 gi|309794436|ref|ZP_07688859.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
 gi|312965433|ref|ZP_07779665.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
 gi|331643137|ref|ZP_08344272.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
 gi|331648214|ref|ZP_08349304.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
 gi|331653945|ref|ZP_08354946.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
 gi|331658662|ref|ZP_08359606.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
 gi|331664080|ref|ZP_08364990.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
 gi|331669263|ref|ZP_08370111.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
 gi|331673972|ref|ZP_08374735.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
 gi|331678508|ref|ZP_08379183.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
 gi|331684165|ref|ZP_08384761.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
 gi|332278330|ref|ZP_08390743.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
 gi|549552|sp|P36979|RLMN_ECOLI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123084401|sp|Q1R8L6|RLMN_ECOUT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123147826|sp|Q0TEW8|RLMN_ECOL5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123728531|sp|Q32D45|RLMN_SHIDS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123755559|sp|Q31XX3|RLMN_SHIBS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123773477|sp|Q3YZ35|RLMN_SHISS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829749|sp|A7ZPW0|RLMN_ECO24 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829750|sp|B1XAZ2|RLMN_ECODH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829752|sp|A1AE55|RLMN_ECOK1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829753|sp|B1IWE4|RLMN_ECOLC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829754|sp|B1LNH2|RLMN_ECOSM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829888|sp|B2TXU2|RLMN_SHIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807172|sp|B7UGW3|RLMN_ECO27 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807173|sp|B7MI02|RLMN_ECO45 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807174|sp|B7LDA9|RLMN_ECO55 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807176|sp|B7NRG7|RLMN_ECO7I RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807177|sp|B7N304|RLMN_ECO81 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807178|sp|B7M7M1|RLMN_ECO8A RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807180|sp|B6I589|RLMN_ECOSE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|259491986|sp|C4ZX92|RLMN_ECOBW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|493519|gb|AAA21359.1| unknown [Escherichia coli]
 gi|1788865|gb|AAC75570.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia
           coli str. K-12 substr. MG1655]
 gi|1799916|dbj|BAA16404.1| hypothetical protein [Escherichia coli str. K12 substr. W3110]
 gi|73856520|gb|AAZ89227.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81242050|gb|ABB62760.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|81246377|gb|ABB67085.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|91073417|gb|ABE08298.1| hypothetical protein UTI89_C2838 [Escherichia coli UTI89]
 gi|110344274|gb|ABG70511.1| hypothetical protein YfgB (putative Fe-S-cluster redox enzyme)
           [Escherichia coli 536]
 gi|115513870|gb|ABJ01945.1| putative Fe-S-cluster redox enzyme [Escherichia coli APEC O1]
 gi|157079868|gb|ABV19576.1| radical SAM enzyme, Cfr family [Escherichia coli E24377A]
 gi|169754128|gb|ACA76827.1| radical SAM enzyme, Cfr family [Escherichia coli ATCC 8739]
 gi|169889962|gb|ACB03669.1| predicted enzyme [Escherichia coli str. K-12 substr. DH10B]
 gi|170521524|gb|ACB19702.1| radical SAM enzyme, Cfr family [Escherichia coli SMS-3-5]
 gi|187428360|gb|ACD07634.1| radical SAM enzyme, Cfr family [Shigella boydii CDC 3083-94]
 gi|188487011|gb|EDU62114.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
 gi|190902278|gb|EDV62018.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
 gi|190907091|gb|EDV66691.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
 gi|192929344|gb|EDV82953.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
 gi|194414649|gb|EDX30921.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
 gi|194423369|gb|EDX39360.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
 gi|209913253|dbj|BAG78327.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|215265939|emb|CAS10348.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69]
 gi|218352876|emb|CAU98675.1| putative Fe-S containing enzyme [Escherichia coli 55989]
 gi|218361810|emb|CAQ99409.1| putative Fe-S containing enzyme [Escherichia coli IAI1]
 gi|218366212|emb|CAR03960.1| putative Fe-S containing enzyme [Escherichia coli S88]
 gi|218371013|emb|CAR18841.1| putative Fe-S containing enzyme [Escherichia coli IAI39]
 gi|218428201|emb|CAV17847.1| putative Fe-S containing enzyme [Escherichia coli ED1a]
 gi|222034228|emb|CAP76969.1| UPF0063 protein yfgB [Escherichia coli LF82]
 gi|226901393|gb|EEH87652.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
           3_2_53FAA]
 gi|238862352|gb|ACR64350.1| predicted enzyme [Escherichia coli BW2952]
 gi|242378115|emb|CAQ32888.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253323633|gb|ACT28235.1| radical SAM enzyme, Cfr family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974392|gb|ACT40063.1| predicted enzyme [Escherichia coli B str. REL606]
 gi|253978559|gb|ACT44229.1| predicted enzyme [Escherichia coli BL21(DE3)]
 gi|257755260|dbj|BAI26762.1| predicted enzyme [Escherichia coli O26:H11 str. 11368]
 gi|257760294|dbj|BAI31791.1| predicted enzyme [Escherichia coli O103:H2 str. 12009]
 gi|260448403|gb|ACX38825.1| radical SAM enzyme, Cfr family [Escherichia coli DH1]
 gi|281179571|dbj|BAI55901.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|284922467|emb|CBG35554.1| radical SAM superfamily protein [Escherichia coli 042]
 gi|291323700|gb|EFE63128.1| cfr family radical SAM enzyme [Escherichia coli B088]
 gi|291471399|gb|EFF13883.1| cfr family radical SAM enzyme [Escherichia coli B354]
 gi|294492482|gb|ADE91238.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli IHE3034]
 gi|299881276|gb|EFI89487.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
 gi|300304052|gb|EFJ58572.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
 gi|300314505|gb|EFJ64289.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
 gi|300396418|gb|EFJ79956.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
 gi|300403741|gb|EFJ87279.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
 gi|300416890|gb|EFK00201.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
 gi|300448975|gb|EFK12595.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
 gi|300454928|gb|EFK18421.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
 gi|300461963|gb|EFK25456.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
 gi|300526566|gb|EFK47635.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
 gi|300529701|gb|EFK50763.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
 gi|300841809|gb|EFK69569.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
 gi|300843621|gb|EFK71381.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
 gi|301073659|gb|EFK88465.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
 gi|305851807|gb|EFM52259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           NC101]
 gi|306907411|gb|EFN37915.1| radical SAM enzyme, Cfr family [Escherichia coli W]
 gi|307625927|gb|ADN70231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           UM146]
 gi|308121892|gb|EFO59154.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
 gi|308927102|gb|EFP72576.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
 gi|309702849|emb|CBJ02180.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
 gi|312289853|gb|EFR17741.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
 gi|312947094|gb|ADR27921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315061836|gb|ADT76163.1| radical SAM protein [Escherichia coli W]
 gi|315137141|dbj|BAJ44300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           DH1]
 gi|315256537|gb|EFU36505.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1]
 gi|315288069|gb|EFU47469.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3]
 gi|315300476|gb|EFU59705.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3]
 gi|315615776|gb|EFU96408.1| UPF0063 protein yfgB [Escherichia coli 3431]
 gi|320175080|gb|EFW50193.1| Ribosomal RNA large subunit methyltransferase N [Shigella
           dysenteriae CDC 74-1112]
 gi|320180507|gb|EFW55438.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii
           ATCC 9905]
 gi|320185217|gb|EFW59997.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri
           CDC 796-83]
 gi|320196354|gb|EFW70978.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
           WV_060327]
 gi|320200081|gb|EFW74670.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
           EC4100B]
 gi|323156172|gb|EFZ42331.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14]
 gi|323159387|gb|EFZ45372.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010]
 gi|323169039|gb|EFZ54716.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G]
 gi|323170210|gb|EFZ55863.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68]
 gi|323184422|gb|EFZ69797.1| hypothetical protein ECOK1357_2143 [Escherichia coli 1357]
 gi|323188365|gb|EFZ73657.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1]
 gi|323377583|gb|ADX49851.1| radical SAM enzyme, Cfr family [Escherichia coli KO11]
 gi|323936410|gb|EGB32700.1| cfr family protein radical SAM enzyme [Escherichia coli E1520]
 gi|323941221|gb|EGB37406.1| cfr family protein radical SAM enzyme [Escherichia coli E482]
 gi|323944739|gb|EGB40806.1| cfr family protein radical SAM enzyme [Escherichia coli H120]
 gi|323949177|gb|EGB45068.1| cfr family protein radical SAM enzyme [Escherichia coli H252]
 gi|323955758|gb|EGB51516.1| cfr family protein radical SAM enzyme [Escherichia coli H263]
 gi|323961333|gb|EGB56945.1| cfr family protein radical SAM enzyme [Escherichia coli H489]
 gi|323967965|gb|EGB63377.1| cfr family protein radical SAM enzyme [Escherichia coli M863]
 gi|323971070|gb|EGB66318.1| cfr family protein radical SAM enzyme [Escherichia coli TA007]
 gi|323977300|gb|EGB72386.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509]
 gi|324008525|gb|EGB77744.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2]
 gi|324011226|gb|EGB80445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1]
 gi|324020077|gb|EGB89296.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3]
 gi|324118139|gb|EGC12036.1| cfr family protein radical SAM enzyme [Escherichia coli E1167]
 gi|327252224|gb|EGE63896.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v]
 gi|330912292|gb|EGH40802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           AA86]
 gi|331039935|gb|EGI12155.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
 gi|331043074|gb|EGI15214.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
 gi|331048794|gb|EGI20870.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
 gi|331054327|gb|EGI26354.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
 gi|331059879|gb|EGI31856.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
 gi|331064457|gb|EGI36368.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
 gi|331069245|gb|EGI40637.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
 gi|331074968|gb|EGI46288.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
 gi|331079117|gb|EGI50319.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
 gi|332092803|gb|EGI97872.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74]
 gi|332100682|gb|EGJ04028.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
 gi|332344389|gb|AEE57723.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 384

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|24374826|ref|NP_718869.1| hypothetical protein SO_3315 [Shewanella oneidensis MR-1]
 gi|81589118|sp|Q8EC29|RLMN_SHEON RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|24349512|gb|AAN56313.1|AE015769_9 conserved hypothetical protein TIGR00048 [Shewanella oneidensis
           MR-1]
          Length = 373

 Score =  471 bits (1212), Expect = e-131,   Method: Composition-based stats.
 Identities = 164/385 (42%), Positives = 223/385 (57%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISGYQKSADGTIKFAI-----HVGEGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG              +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKETGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL+  +   R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|119775502|ref|YP_928242.1| ribosomal RNA large subunit methyltransferase N [Shewanella
           amazonensis SB2B]
 gi|205829877|sp|A1S866|RLMN_SHEAM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|119768002|gb|ABM00573.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 373

 Score =  471 bits (1212), Expect = e-131,   Method: Composition-based stats.
 Identities = 167/385 (43%), Positives = 224/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ +    L+  L ++G        R  QI +WIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDLPGLKALLTEMG----EKPFRAQQIMQWIYHFGVSDFEQMTNINKAMRAKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEITSYQKSSDGTIKFAI-----NVGQGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG              +  R ISN+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FQKETGERPISNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  +++I  D  G   SKRR+TLSTSG VP + ++G+ I V LA+S+H
Sbjct: 165 MGMGEPLLNLANVVPAMNIMLDDYGFGLSKRRVTLSTSGVVPALDKLGDVIDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR++LVPIN+KYPL+  + A R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDVLVPINKKYPLQEFLAAIRRYLEKSNANRGRVTLEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P KINLIPFNP+PG  Y  S    I  F++ +     +  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFAKVLMEYDLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQESQIS 369


>gi|170725898|ref|YP_001759924.1| ribosomal RNA large subunit methyltransferase N [Shewanella woodyi
           ATCC 51908]
 gi|205829887|sp|B1KKI9|RLMN_SHEWM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|169811245|gb|ACA85829.1| radical SAM enzyme, Cfr family [Shewanella woodyi ATCC 51908]
          Length = 373

 Score =  471 bits (1212), Expect = e-131,   Method: Composition-based stats.
 Identities = 167/385 (43%), Positives = 225/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L     ++G        R  Q+ KWIY  G+ DF  M++I++ +R  L
Sbjct: 4   KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWIYHFGVSDFDEMNNINKALRAKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N    I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  NARCEIVAPEISSFQKSEDGTIKFAI-----NVGQGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV      +G           V  +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIIGQVWRVADFIG----------FVKETGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+T+STSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR++LVP+N+KYPLE  +   R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   Q+ QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQDSQIS 369


>gi|209965840|ref|YP_002298755.1| radical SAM enzyme, Cfr family [Rhodospirillum centenum SW]
 gi|209959306|gb|ACI99942.1| radical SAM enzyme, Cfr family [Rhodospirillum centenum SW]
          Length = 399

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 205/372 (55%), Positives = 269/372 (72%), Gaps = 17/372 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + +L+G+ RE+LE    + G      + R  Q+W+WIY RG+ DF  M+++++  R  L 
Sbjct: 18  RVNLVGLSREDLEAEFARAGFE----KFRARQVWQWIYNRGVTDFAAMTNLAKPARERLA 73

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +H+ I  P  V +  S DGTRKWL R P        EIETV+IPE+ RGTLCVSSQVGC+
Sbjct: 74  EHYVIERPLAVKDLQSDDGTRKWLCRMP----ADGQEIETVHIPEEDRGTLCVSSQVGCT 129

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           +TC FC+TGTQ+LVRNLT+ EI+ QV+LAR  LG++P          P+ GR +SNIVMM
Sbjct: 130 MTCRFCHTGTQRLVRNLTSAEIVGQVMLARDHLGEWPS---------PAEGRMLSNIVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N++NV ++L I  D  G++ SKRRITLSTSG VP + R G E+GV LA+SLHA
Sbjct: 181 GMGEPLFNYENVARALKIVMDGEGIAISKRRITLSTSGVVPMMRRCGAELGVNLAVSLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V+++LRN +VPIN+KYP+  L+DA R YPGL+NARR+T+EYVMLKG+NDS  DA  L+++
Sbjct: 241 VTDELRNRIVPINKKYPIAELMDAVRTYPGLNNARRVTWEYVMLKGVNDSLADARALVRL 300

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIP+KINLIPFNPWPG  + CSD   IV FS+ +  +GY+SPIR PRG DI+AACGQL
Sbjct: 301 IRGIPSKINLIPFNPWPGAPFECSDWDQIVRFSDFVNDAGYASPIRAPRGKDIMAACGQL 360

Query: 366 KSLSKRIPKVPR 377
           KS S+R     R
Sbjct: 361 KSESQRGISARR 372


>gi|26248881|ref|NP_754921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           CFT073]
 gi|227887552|ref|ZP_04005357.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
 gi|300981979|ref|ZP_07175825.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
 gi|301047150|ref|ZP_07194245.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
 gi|81475264|sp|Q8FF55|RLMN_ECOL6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|26109287|gb|AAN81489.1|AE016764_171 Hypothetical protein yfgB [Escherichia coli CFT073]
 gi|227835902|gb|EEJ46368.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
 gi|300300936|gb|EFJ57321.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
 gi|300408874|gb|EFJ92412.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
 gi|307554540|gb|ADN47315.1| radical SAM enzyme [Escherichia coli ABU 83972]
 gi|315292442|gb|EFU51794.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1]
          Length = 384

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 160/382 (41%), Positives = 218/382 (57%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y G SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLGKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|300920672|ref|ZP_07137083.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
 gi|300412353|gb|EFJ95663.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
          Length = 384

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDDTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|85708979|ref|ZP_01040045.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. NAP1]
 gi|85690513|gb|EAQ30516.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. NAP1]
          Length = 416

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 194/374 (51%), Positives = 259/374 (69%), Gaps = 13/374 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  LIG+ R  + E   + G+ +R  ++R  Q++ W+Y RG+ DF+ M+DIS+ +R  L 
Sbjct: 29  RIDLIGLPRPRIRELFAEAGLDERQAKLRAKQVFHWLYHRGVTDFEAMTDISKTMRPWLA 88

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  P IV+ + S DGTRKWLL+          + E V+IP+  RGTLCVSSQVGC+
Sbjct: 89  ERFVIGRPNIVEAQHSSDGTRKWLLQT-----DDGHDFEMVFIPDADRGTLCVSSQVGCT 143

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC------EDIEGMVIPSVGRKI 179
           L C+FC+TGT +LVRNLT  EI+ QV+LAR  LG++P        E  +     + GR +
Sbjct: 144 LNCTFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGVMDGLDEAEDVGHYTADGRLL 203

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +NIVMMGMGEPL NFD+V+ +L++  D  GL+ SKRRITLSTSG VP + R GEEIGV L
Sbjct: 204 TNIVMMGMGEPLYNFDHVRDALNLVMDGDGLALSKRRITLSTSGVVPAMERCGEEIGVNL 263

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHAV+ D+R+ +VP+N+KY +E L+ AC  YPG SNARRITFEYVMLK  NDS  DA
Sbjct: 264 AVSLHAVTKDVRDEIVPLNKKYGIEELLQACADYPGASNARRITFEYVMLKDKNDSDEDA 323

Query: 300 LNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
             L+++L+   +PAK+NLIPFNPWPG  Y CS  + I  FS  +   G S+P+RTPRG D
Sbjct: 324 RELVRLLRKFDLPAKVNLIPFNPWPGANYECSTPERIKAFSNIVFEGGISAPVRTPRGRD 383

Query: 358 ILAACGQLKSLSKR 371
           I AACGQLK+ +++
Sbjct: 384 IDAACGQLKTAAQK 397


>gi|296104196|ref|YP_003614342.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058655|gb|ADF63393.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 388

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 159/379 (41%), Positives = 217/379 (57%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     +F  M+DI++ +R+ L 
Sbjct: 21  KINLLDLNRQQMREFFKELG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGTRPITNVVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 301 ALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 360

Query: 364 QLKSLS-KRIPKVPRQEMQ 381
           QL      R  +  R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379


>gi|218706020|ref|YP_002413539.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           UMN026]
 gi|293405958|ref|ZP_06649950.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
 gi|298381759|ref|ZP_06991358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           FVEC1302]
 gi|300898379|ref|ZP_07116722.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
 gi|254807179|sp|B7N6A5|RLMN_ECOLU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|218433117|emb|CAR14014.1| putative Fe-S containing enzyme [Escherichia coli UMN026]
 gi|291428166|gb|EFF01193.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
 gi|298279201|gb|EFI20715.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           FVEC1302]
 gi|300357919|gb|EFJ73789.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
          Length = 384

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRCYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|157161992|ref|YP_001459310.1| hypothetical protein EcHS_A2668 [Escherichia coli HS]
 gi|205829751|sp|A8A323|RLMN_ECOHS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157067672|gb|ABV06927.1| radical SAM enzyme, Cfr family [Escherichia coli HS]
          Length = 384

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEVDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|160876257|ref|YP_001555573.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
           OS195]
 gi|217972550|ref|YP_002357301.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
           OS223]
 gi|304410038|ref|ZP_07391657.1| radical SAM enzyme, Cfr family [Shewanella baltica OS183]
 gi|307302249|ref|ZP_07582007.1| radical SAM enzyme, Cfr family [Shewanella baltica BA175]
 gi|205829880|sp|A9KXL1|RLMN_SHEB9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807210|sp|B8E9S4|RLMN_SHEB2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|160861779|gb|ABX50313.1| radical SAM enzyme, Cfr family [Shewanella baltica OS195]
 gi|217497685|gb|ACK45878.1| radical SAM enzyme, Cfr family [Shewanella baltica OS223]
 gi|304351447|gb|EFM15846.1| radical SAM enzyme, Cfr family [Shewanella baltica OS183]
 gi|306914287|gb|EFN44708.1| radical SAM enzyme, Cfr family [Shewanella baltica BA175]
 gi|315268446|gb|ADT95299.1| radical SAM enzyme, Cfr family [Shewanella baltica OS678]
          Length = 373

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 167/385 (43%), Positives = 225/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KW+Y  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADMG----EKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSFQKSTDGTIKFAI-----NVGQGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG Q   RNLT  EI+ Q+      LG              +  R I+N+VM
Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ I V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVPIN+KYPL+  +   R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P K+NLIPFNP+PG  Y  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|332087964|gb|EGI93089.1| hypothetical protein SB521682_2897 [Shigella boydii 5216-82]
          Length = 384

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 160/382 (41%), Positives = 218/382 (57%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +        G   +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAV------GYQRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|149184387|ref|ZP_01862705.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. SD-21]
 gi|148831707|gb|EDL50140.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. SD-21]
          Length = 421

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 193/387 (49%), Positives = 259/387 (66%), Gaps = 18/387 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  LIG+ +E + E     G+  +  ++R  Q++ W+Y RG+ DF+ M+DI++ +R  L 
Sbjct: 29  RVDLIGLPKERIRELFETAGLQPKQAKLRAKQVFHWLYHRGVTDFEAMTDIAKTMRPWLA 88

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V+ + S DGTRKWLL+          E E V+IP+  RGTLCVSSQVGC+
Sbjct: 89  ERFVIGRPEVVEAQHSTDGTRKWLLKT-----ADGHEFEMVFIPDADRGTLCVSSQVGCT 143

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC-----------EDIEGMVIPS 174
           L C FC+TGT KLVRNLT  EI+ QV+LAR  LG++P             +  +     S
Sbjct: 144 LNCRFCHTGTMKLVRNLTPGEIVGQVMLARDALGEWPKGNMNFDYGADLDDAEDEGHYTS 203

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
            GR ++NIVMMGMGEPL NFDNVK +L +  D  GL+ SKRRITLSTSG VP + R GEE
Sbjct: 204 DGRLLTNIVMMGMGEPLYNFDNVKGALKLVMDGDGLALSKRRITLSTSGVVPAMERCGEE 263

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           IGV LA+SLHAV+ ++R+ +VP+N+KY +E L++AC  YPG SNARRITFEYVMLK  ND
Sbjct: 264 IGVNLAVSLHAVTKEIRDEIVPLNKKYGIEELLEACAAYPGASNARRITFEYVMLKDKND 323

Query: 295 SPRDALNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           +   A  L+++LK   +PAK+NLIPFNPWPG  Y  S  + +  FS+ +   G S+P+RT
Sbjct: 324 TDEHARELVRLLKHYKLPAKVNLIPFNPWPGAAYDTSTPERVKRFSDIVFEGGISAPVRT 383

Query: 353 PRGLDILAACGQLKSLSKRIPKVPRQE 379
           PRG DI AACGQLK+ +++  +  R  
Sbjct: 384 PRGRDIDAACGQLKTAAEKKSRAQRDR 410


>gi|146293751|ref|YP_001184175.1| ribosomal RNA large subunit methyltransferase N [Shewanella
           putrefaciens CN-32]
 gi|205829884|sp|A4Y8U3|RLMN_SHEPC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145565441|gb|ABP76376.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens CN-32]
          Length = 373

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 165/385 (42%), Positives = 223/385 (57%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSFQKSTDGTIKFAI-----HVGEGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+      LG      D          R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGD----------RPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVP+N+KYPL+  +   R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+++  P K+NLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AKLMEDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|156932938|ref|YP_001436854.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
           sakazakii ATCC BAA-894]
 gi|205829756|sp|A7MGV3|RLMN_ENTS8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|156531192|gb|ABU76018.1| hypothetical protein ESA_00741 [Cronobacter sakazakii ATCC BAA-894]
          Length = 388

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 161/380 (42%), Positives = 217/380 (57%), Gaps = 23/380 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+ + E    +G        R  Q+ KW+Y     DF  M+DI++ +R  L
Sbjct: 20  EKINLLDLNRQAMREFFKTLG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVLRGKL 75

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC
Sbjct: 76  KEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 130 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 179

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++++R+ +VPIN+KY +E  + A R Y G SNA   R+T EYVML  +ND    A  L
Sbjct: 240 APNDEIRDEIVPINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQL 299

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 300 AELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAC 359

Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
           GQL      R  +  R+ MQ
Sbjct: 360 GQLAGDVIDRTKRTMRKRMQ 379


>gi|325265757|ref|ZP_08132444.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
 gi|324982740|gb|EGC18365.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
          Length = 364

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 161/377 (42%), Positives = 221/377 (58%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+      L E   ++G        R  Q+ +WI+  G   F  M+D+++ +R  L 
Sbjct: 2   KTNLLNFDLNALTEHFAQMG----EKPFRAKQVMRWIHQGGAESFDEMTDLAKSLRAKLQ 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   +  P ++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EKAVVGIPVLMAAQESRDGTRKWLL-----DVGTGNGVETVFIPETERGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   LG           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKALG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ N+DNV  +LSI  D  G   S+RR+T+STSG VP + R+ E++ V LA+SLHA
Sbjct: 162 GMGEPMANYDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +R+ +VP+N+KYPL+ L+ AC  Y   +    ITFEYVML G+ND P  A  L+++
Sbjct: 222 SNDKVRDEIVPLNKKYPLKELMAACNRYLTKAPRDFITFEYVMLDGVNDKPEHAHELVQL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K  P K NLIPFNP+P   Y  S  K+I  F E +  +G  + +R  RG DI AACGQL
Sbjct: 282 VKDTPCKFNLIPFNPFPNSGYERSSNKNINIFKEILMEAGLVTTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   K   +  QI
Sbjct: 342 AGQVQDKTKRQEKWQQI 358


>gi|333000705|gb|EGK20281.1| hypothetical protein SFVA6_3397 [Shigella flexneri VA-6]
 gi|333002312|gb|EGK21876.1| hypothetical protein SFK272_3309 [Shigella flexneri K-272]
 gi|333016135|gb|EGK35467.1| hypothetical protein SFK227_3146 [Shigella flexneri K-227]
          Length = 384

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|87199457|ref|YP_496714.1| hypothetical protein Saro_1436 [Novosphingobium aromaticivorans DSM
           12444]
 gi|123749853|sp|Q2G8E3|RLMN_NOVAD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|87135138|gb|ABD25880.1| 23S rRNA m(2)A-2503 methyltransferase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 429

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 197/394 (50%), Positives = 263/394 (66%), Gaps = 21/394 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  LIG+ R+++ E   + G+  +  ++R  Q++ W+Y RG+ DF  M+DI++ +R  L 
Sbjct: 35  RIDLIGLPRKQIAELFAQAGLDAKAAKLRAKQVFHWLYHRGVTDFDAMTDIAKTMRPWLA 94

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PEIV+ ++S DGTRKWLLR   +      + E V+IP+  RGTLCVSSQVGC+
Sbjct: 95  ERFVIGRPEIVEAQVSTDGTRKWLLRTADK-----HDFEMVFIPDADRGTLCVSSQVGCT 149

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC--------------EDIEGMV 171
           L C FC+TGT +LVRNLT  EI+ QV+LAR  LG++P                +D +   
Sbjct: 150 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGANDSRVATMAGLDFDDEDEGS 209

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
             S GR ++NIVMMGMGEPL NFDNV+ +L +  D  GL+ SKRRITLSTSG VP + R 
Sbjct: 210 YTSDGRLLTNIVMMGMGEPLYNFDNVRDALKLVMDGDGLALSKRRITLSTSGVVPMMERC 269

Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           GEEIGV LA+SLHAV+ D+R+ +VPINRKY +E L+ AC  YPG SNARRITFEYVMLK 
Sbjct: 270 GEEIGVNLAVSLHAVTKDVRDEIVPINRKYGIEELLQACADYPGASNARRITFEYVMLKD 329

Query: 292 INDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
            NDS   A  L+++++   +PAK+NLIPFNPWPG  Y CS    I +F+  +  +G S+P
Sbjct: 330 KNDSDDHARELVRLIRQYKLPAKVNLIPFNPWPGAPYECSSPDRIKSFANIVFEAGISAP 389

Query: 350 IRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
           +RTPRG DI AACGQLK+ S+R  +     +   
Sbjct: 390 VRTPRGRDIDAACGQLKTASERKSRAELDRLAEE 423


>gi|283786133|ref|YP_003365998.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
 gi|282949587|emb|CBG89205.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
          Length = 388

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 218/382 (57%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     +F  M+DI++ +R+ L 
Sbjct: 21  KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDEMTDINKVLRNKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 360

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 361 QLAGDVIDRTKRTLRKRMQGEA 382


>gi|153001521|ref|YP_001367202.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
           OS185]
 gi|205829879|sp|A6WQQ0|RLMN_SHEB8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|151366139|gb|ABS09139.1| radical SAM enzyme, Cfr family [Shewanella baltica OS185]
          Length = 373

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 167/385 (43%), Positives = 225/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KW+Y  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADMG----EKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSFQKSTDGTIKFAI-----NVGQGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG Q   RNLT  EI+ Q+      LG              +  R I+N+VM
Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVPIN+KYPL+  +   R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|294140143|ref|YP_003556121.1| hypothetical protein SVI_1372 [Shewanella violacea DSS12]
 gi|293326612|dbj|BAJ01343.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 379

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 168/385 (43%), Positives = 224/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 10  KKINLLDLDRKGLRALFTDMG----EKPFRADQLMKWIYHFGVSDFELMTNINKGLRAKL 65

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  P+I   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 66  AARCEITAPQISSYQKSEDGTIKFAI-----NVGDGQEVETVYIPEGDRATLCVSSQVGC 120

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV      +G           +  +  R I+N+VM
Sbjct: 121 ALECTFCSTAQQGFNRNLTVSEIIGQVWRVADFIG----------FIKDTGERPITNVVM 170

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP +  +G+ I V LA+S+H
Sbjct: 171 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDAIDVALAVSIH 230

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR++LVP+N+KYPLE  + A R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 231 AANDELRDVLVPVNKKYPLEEFLAAIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 290

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 291 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 350

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 351 GQLAGDIRDRTKRLAKKRMQENQIS 375


>gi|157144549|ref|YP_001451868.1| ribosomal RNA large subunit methyltransferase N [Citrobacter koseri
           ATCC BAA-895]
 gi|205829699|sp|A8AD69|RLMN_CITK8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157081754|gb|ABV11432.1| hypothetical protein CKO_00268 [Citrobacter koseri ATCC BAA-895]
          Length = 388

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 162/382 (42%), Positives = 218/382 (57%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 21  KINLLDLNRQQMREFFKELG----EKPFRADQVMKWMYHYCSDNFDEMTDINKVLRGKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPINRKY +E  +DA R Y   SNA   R+T EYVML  IND    A  L 
Sbjct: 241 PNDEIRDEIVPINRKYNIETFLDAVRRYLQKSNANQGRVTIEYVMLDHINDGTEHAHQLA 300

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 360

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 361 QLAGDVIDRTKRTLRKRMQGEA 382


>gi|295691362|ref|YP_003595055.1| radical SAM enzyme, Cfr family [Caulobacter segnis ATCC 21756]
 gi|295433265|gb|ADG12437.1| radical SAM enzyme, Cfr family [Caulobacter segnis ATCC 21756]
          Length = 403

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 196/380 (51%), Positives = 268/380 (70%), Gaps = 16/380 (4%)

Query: 7   ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
            +L G+ R +L  AL++ G+      +MR +QI++W++ RG+ DF  MSD+++E R  L 
Sbjct: 25  VNLSGLTRPQLIAALVESGVVEHGKAKMRATQIFRWMHHRGVTDFASMSDVAKETRARLA 84

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
           + F+I  PEIV+ ++S DGTRKWL+R         +E+E+V+IP   R G LCVSSQVGC
Sbjct: 85  EAFTIARPEIVERQVSQDGTRKWLIRMAP-----GIEVESVFIPGVGRAGALCVSSQVGC 139

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ LVRNLTA EI+ QV +A+  LG++P  ++          R++SNIV 
Sbjct: 140 TLNCSFCHTGTQPLVRNLTAAEIVAQVQVAKDDLGEWPSDKE---------DRQLSNIVF 190

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N   V  ++ I SD+ G+  S+RRIT+STSG VP + ++G     MLAISLH
Sbjct: 191 MGMGEPLYNLGQVADAIEIISDNEGIGISRRRITVSTSGVVPMLEKLGSTTQAMLAISLH 250

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR++LVP+N+KYP+  L+   R YPGLSNARR+TFEYVMLKG+NDSP +A  L+ 
Sbjct: 251 ATNDALRDVLVPLNKKYPIAELMAGIRAYPGLSNARRVTFEYVMLKGVNDSPPEARALVN 310

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KGIPAKINLIPFNPWPG +Y CSD   I  F+  + ++GYSSPIRTPRG DILAACGQ
Sbjct: 311 LIKGIPAKINLIPFNPWPGSDYQCSDWATIEAFAAILNKAGYSSPIRTPRGRDILAACGQ 370

Query: 365 LKSLSKRIPKVPRQEMQITG 384
           LKS S+++     +++ +  
Sbjct: 371 LKSESEKVRASALRKLSLAA 390


>gi|163749560|ref|ZP_02156807.1| hypothetical protein KT99_16109 [Shewanella benthica KT99]
 gi|161330670|gb|EDQ01607.1| hypothetical protein KT99_16109 [Shewanella benthica KT99]
          Length = 373

 Score =  468 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 167/385 (43%), Positives = 225/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L      +G        R  Q+ KWIY  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKGLRALFTDMG----EKPFRADQLMKWIYHFGVSDFEVMTNINKVLRAKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AASCEIKAPEISSYQKSADGTIKFSI-----NVGDGQEVETVYIPEGDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV      +G           +  +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIIGQVWRVADFIG----------FIKKTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ I V LA+S+H
Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR++LVP+N+KYPL+  + + R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 AANDELRDVLVPVNKKYPLQEFLASIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGEDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|149375014|ref|ZP_01892787.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
 gi|149360903|gb|EDM49354.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
          Length = 370

 Score =  468 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 160/380 (42%), Positives = 230/380 (60%), Gaps = 20/380 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM + ++E     +G      R R +Q+ +WI+ RG  DF  M+++S+ +R  L
Sbjct: 6   EKTNLLGMPKAKMEAFFESLG----EKRFRATQVLQWIHQRGADDFDQMTNMSKVLREKL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+V ++ S DGTRKW++R           +ETV IP+  RGTLCVSSQ+GC
Sbjct: 62  KAVAEIRGPEVVYDESSKDGTRKWVMRM-----DNGNSVETVLIPDGERGTLCVSSQIGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C+FC TG +   RNLTA EI+ QV +AR     F           P   R I+N+VM
Sbjct: 117 SLDCTFCSTGKRGFNRNLTAAEIIGQVWVARKAFMPF----------EPGPDRPITNVVM 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++++  + +    SKRR+T+STSG VP + ++GE   V LAISLH
Sbjct: 167 MGMGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTVSTSGVVPALDKLGEVTDVSLAISLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLI 303
           A +++LRN LVP+N+KYP+  L+ A R Y   L + R+ T EY +++G+ND P  A  L 
Sbjct: 227 APNDELRNQLVPLNKKYPIAELLAATRRYLARLPDKRKATIEYTVIEGVNDQPEHARELA 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L+G+P KINLIPFNP+P  ++          F   +  +GY + +RT RG DI AACG
Sbjct: 287 VVLRGLPCKINLIPFNPFPESDFRRPSMNATRRFQSVLNEAGYIATVRTTRGDDIDAACG 346

Query: 364 QLKSLSKRIPKVPRQEMQIT 383
           QL  + +   K  ++ +Q+ 
Sbjct: 347 QLVGMVEDRTKRSQRYIQVQ 366


>gi|15832633|ref|NP_311406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. Sakai]
 gi|168748424|ref|ZP_02773446.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756289|ref|ZP_02781296.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761127|ref|ZP_02786134.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768609|ref|ZP_02793616.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773569|ref|ZP_02798576.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778483|ref|ZP_02803490.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787863|ref|ZP_02812870.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC869]
 gi|168798888|ref|ZP_02823895.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC508]
 gi|195936659|ref|ZP_03082041.1| hypothetical protein EscherichcoliO157_09385 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808631|ref|ZP_03250968.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814380|ref|ZP_03255709.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820776|ref|ZP_03261096.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400754|ref|YP_002271987.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327135|ref|ZP_03443218.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794463|ref|YP_003079300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. TW14359]
 gi|261223051|ref|ZP_05937332.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259398|ref|ZP_05951931.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK966]
 gi|291283738|ref|YP_003500556.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
           CB9615]
 gi|205829862|sp|Q8XAA4|RLMN_ECO57 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807175|sp|B5Z0Y6|RLMN_ECO5E RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|13362849|dbj|BAB36802.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187770632|gb|EDU34476.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017093|gb|EDU55215.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003147|gb|EDU72133.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356574|gb|EDU74993.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362276|gb|EDU80695.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368421|gb|EDU86837.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372335|gb|EDU90751.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC869]
 gi|189378598|gb|EDU97014.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC508]
 gi|208728432|gb|EDZ78033.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735657|gb|EDZ84344.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740899|gb|EDZ88581.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162154|gb|ACI39587.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209763360|gb|ACI79992.1| hypothetical protein ECs3379 [Escherichia coli]
 gi|209763362|gb|ACI79993.1| hypothetical protein ECs3379 [Escherichia coli]
 gi|209763364|gb|ACI79994.1| hypothetical protein ECs3379 [Escherichia coli]
 gi|209763366|gb|ACI79995.1| hypothetical protein ECs3379 [Escherichia coli]
 gi|217319502|gb|EEC27927.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
           TW14588]
 gi|254593863|gb|ACT73224.1| predicted enzyme [Escherichia coli O157:H7 str. TW14359]
 gi|290763611|gb|ADD57572.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
           CB9615]
 gi|320188850|gb|EFW63509.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640861|gb|EFX10349.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. G5101]
 gi|320657195|gb|EFX25004.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320662801|gb|EFX30133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320667605|gb|EFX34520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326340315|gb|EGD64119.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. 1125]
 gi|326344999|gb|EGD68743.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H7 str. 1044]
          Length = 384

 Score =  468 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 158/382 (41%), Positives = 216/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+P   Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|193068396|ref|ZP_03049359.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
 gi|192958348|gb|EDV88788.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
          Length = 384

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 158/382 (41%), Positives = 216/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++      +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMRVFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|146308518|ref|YP_001188983.1| radical SAM protein [Pseudomonas mendocina ymp]
 gi|205829652|sp|A4XY35|RLMN_PSEMY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145576719|gb|ABP86251.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas mendocina ymp]
          Length = 382

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 169/378 (44%), Positives = 228/378 (60%), Gaps = 21/378 (5%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R
Sbjct: 3   NTTGKINLLGLTQPEMEQFFESIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKALR 58

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L     I  PE+V E IS DGTRKW++R     +     +ETVYIP+  RGTLCVSSQ
Sbjct: 59  EKLEASAEIRGPEVVSENISADGTRKWVVR-----VASGSCVETVYIPQNGRGTLCVSSQ 113

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC+L CSFC TG Q    +LT+ EI+ QV +A    G  P   D          R I+N
Sbjct: 114 AGCALDCSFCSTGKQGFNSDLTSAEIIGQVWIANKSFGTVPAKID----------RAITN 163

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL NFDNV  ++ I  D +G   SKR++TLSTSG VP I ++ E I V LA+
Sbjct: 164 VVMMGMGEPLLNFDNVVSAMQIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLAL 223

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDAL 300
           SLHA +++LRN LVPIN+KYPL+ML+ AC+ Y      +R+ T EY +LKG+ND P  A 
Sbjct: 224 SLHAPNDELRNQLVPINKKYPLDMLLAACKRYVAKLGEKRVLTIEYTLLKGVNDQPEHAE 283

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            +I +L  +P KINLIPFNP+P   Y       I  F + + ++G++  +RT RG DI A
Sbjct: 284 QMIALLADVPCKINLIPFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGDDIDA 343

Query: 361 ACGQL-KSLSKRIPKVPR 377
           ACGQL   +  R  +  R
Sbjct: 344 ACGQLVGQVMDRTRRSER 361


>gi|24113846|ref|NP_708356.1| hypothetical protein SF2563 [Shigella flexneri 2a str. 301]
 gi|30063909|ref|NP_838080.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T]
 gi|110806448|ref|YP_689968.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
           5 str. 8401]
 gi|81723142|sp|Q83K42|RLMN_SHIFL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123342626|sp|Q0T202|RLMN_SHIF8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|24052937|gb|AAN44063.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30042165|gb|AAP17890.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T]
 gi|110615996|gb|ABF04663.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|313651003|gb|EFS15403.1| UPF0063 protein yfgB [Shigella flexneri 2a str. 2457T]
 gi|332754204|gb|EGJ84572.1| hypothetical protein SF434370_2731 [Shigella flexneri 4343-70]
 gi|332755567|gb|EGJ85931.1| hypothetical protein SFK671_3114 [Shigella flexneri K-671]
 gi|332756478|gb|EGJ86829.1| hypothetical protein SF274771_3067 [Shigella flexneri 2747-71]
 gi|332766350|gb|EGJ96560.1| 23S rRNA methyltransferase [Shigella flexneri 2930-71]
 gi|333016202|gb|EGK35533.1| hypothetical protein SFK304_3333 [Shigella flexneri K-304]
          Length = 384

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 158/382 (41%), Positives = 216/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+P   Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPDAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|293415781|ref|ZP_06658424.1| cfr family radical SAM enzyme [Escherichia coli B185]
 gi|291433429|gb|EFF06408.1| cfr family radical SAM enzyme [Escherichia coli B185]
          Length = 384

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 158/382 (41%), Positives = 216/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EMAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+ G  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFLGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|326387224|ref|ZP_08208834.1| hypothetical protein Y88_1274 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208405|gb|EGD59212.1| hypothetical protein Y88_1274 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 421

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 196/393 (49%), Positives = 258/393 (65%), Gaps = 20/393 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ R+ + E     G+  R  ++R  Q++ WIY RG+ DF  M+DI++ +R  L+
Sbjct: 28  RIDLVGLPRKAITELFATAGLDARAAKLRAKQVFHWIYHRGVTDFDAMTDIAKTMRPWLS 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  P IV  + S DGTRKWLLR          + E V+IP+  RGTLCVSSQVGC+
Sbjct: 88  ERFVIDRPSIVTAQASSDGTRKWLLRTADN-----HDFEMVFIPDADRGTLCVSSQVGCT 142

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC-------------EDIEGMVI 172
           L C FC+TGT +LVRNLT  EI+ QV+LAR  LG++P               +       
Sbjct: 143 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGGGTMAGLDEDPEDDPEGAQAY 202

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
            + GR ++NIVMMGMGEPL NFDNV+ +L I  D  GL+ SKRRITLSTSG VP + R G
Sbjct: 203 TADGRLLTNIVMMGMGEPLYNFDNVRDALKIVMDGDGLALSKRRITLSTSGVVPMMDRCG 262

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           +EIGV LA+SLHAV+ ++R+ +VPINRKY LE L+ AC  YPG SNARRITFEYVMLK  
Sbjct: 263 DEIGVNLAVSLHAVTKEVRDEIVPINRKYGLEELLSACAAYPGASNARRITFEYVMLKDK 322

Query: 293 NDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           NDS  DA  L+++++   +PAK+NLIPFNPWPG  Y CS  + I  FS+ +  +G S+P+
Sbjct: 323 NDSDEDARELVRLIRKYKLPAKVNLIPFNPWPGAPYECSTPERIKRFSDIVFEAGISAPV 382

Query: 351 RTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
           RTPRG DI AACGQLK+ ++R  +     +   
Sbjct: 383 RTPRGRDIDAACGQLKTAAERKTRAELDRLAEE 415


>gi|15599001|ref|NP_252495.1| hypothetical protein PA3806 [Pseudomonas aeruginosa PAO1]
 gi|107103326|ref|ZP_01367244.1| hypothetical protein PaerPA_01004395 [Pseudomonas aeruginosa PACS2]
 gi|116051831|ref|YP_789326.1| hypothetical protein PA14_14830 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296387679|ref|ZP_06877154.1| hypothetical protein PaerPAb_05972 [Pseudomonas aeruginosa PAb1]
 gi|313109224|ref|ZP_07795192.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa 39016]
 gi|3287987|sp|Q51385|RLMN_PSEAE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|122260978|sp|Q02RW0|RLMN_PSEAB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|9949979|gb|AAG07193.1|AE004798_16 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|1162959|gb|AAB40948.1| homologous to HI0365 in Haemophilus influenzae; ORF1 [Pseudomonas
           aeruginosa PAO1]
 gi|115587052|gb|ABJ13067.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310881694|gb|EFQ40288.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa 39016]
          Length = 379

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 171/374 (45%), Positives = 227/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + +LE+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 8   KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 63

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PEIV + IS DGTRKW++R     +     +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 64  ASAEIRGPEIVSQDISADGTRKWVVR-----VASGSCVETVYIPQGGRGTLCVSSQAGCA 118

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    +LTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 119 LDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 168

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  +++I  D +G   SKR++TLSTSG VP I ++GE I V LA+SLHA
Sbjct: 169 GMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 228

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL ML+DACR Y      +R+ T EY +LK +ND P  A  +I 
Sbjct: 229 PNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 288

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + + G++  +RT RG DI AACGQ
Sbjct: 289 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQ 348

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 349 LVGQVMDRTRRSER 362


>gi|237732496|ref|ZP_04562977.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
 gi|226908035|gb|EEH93953.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
          Length = 388

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 161/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     +F  M+DI++ +R+ L 
Sbjct: 21  KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           V  +  R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AVKATGVRPITNVVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  IND    A  L 
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDGTEHAHQLA 300

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 360

Query: 364 QLKSLS-KRIPKVPRQEMQ 381
           QL      R  +  R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379


>gi|218889910|ref|YP_002438774.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
 gi|218770133|emb|CAW25895.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
          Length = 379

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 171/374 (45%), Positives = 227/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + +LE+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 8   KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 63

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PEIV + IS DGTRKW++R     +     +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 64  ASAEIRGPEIVSQDISADGTRKWVVR-----VASGSCVETVYIPQGGRGTLCVSSQAGCA 118

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    +LTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 119 LDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 168

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  +++I  D +G   SKR++TLSTSG VP I ++GE I V LA+SLHA
Sbjct: 169 GMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 228

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL ML+DACR Y      +R+ T EY +LK +ND P  A  +I 
Sbjct: 229 PNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 288

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + + G++  +RT RG DI AACGQ
Sbjct: 289 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQ 348

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 349 LVGQVMDRTRRSER 362


>gi|283832102|ref|ZP_06351843.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
 gi|291071728|gb|EFE09837.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
          Length = 388

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     +F  M+DI++ +R+ L 
Sbjct: 21  KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           V  +  R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AVKATGVRPITNVVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMGYGFTTIVRKTRGDDIDAACG 360

Query: 364 QLKSLS-KRIPKVPRQEMQ 381
           QL      R  +  R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379


>gi|311278552|ref|YP_003940783.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
 gi|308747747|gb|ADO47499.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
          Length = 388

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 160/383 (41%), Positives = 217/383 (56%), Gaps = 23/383 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   K +L+ + R++L E    +G        R  Q+ KW+Y     +F  M+DI++ +R
Sbjct: 17  NKDAKINLLDLNRQQLREFFHNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 72

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L +   I  P++V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQ
Sbjct: 73  GKLKEVAEIRAPDVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQ 126

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A
Sbjct: 237 SLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI 
Sbjct: 297 HQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMNYGFTTIVRKTRGDDID 356

Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381
           AACGQL      R  +  R+ MQ
Sbjct: 357 AACGQLAGDVIDRTKRTMRKRMQ 379


>gi|197285703|ref|YP_002151575.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
           HI4320]
 gi|227356214|ref|ZP_03840603.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906]
 gi|254807194|sp|B4EZT6|RLMN_PROMH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|194683190|emb|CAR43831.1| radical SAM superfamily protein [Proteus mirabilis HI4320]
 gi|227163678|gb|EEI48594.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906]
          Length = 393

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 163/384 (42%), Positives = 223/384 (58%), Gaps = 23/384 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +N   K +L+ + R+++ E  + +G        R  QI KWIY     DF  M+DI++ +
Sbjct: 21  VNQKTKINLLDLNRKQMRELFVSMG----EKPFRADQIMKWIYHYCYDDFDQMTDINKVL 76

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSS
Sbjct: 77  RAKLKEIAEIKAPEVSEEQRSADGTIKWAIKV------GSQQVETVYIPEDDRATLCVSS 130

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I+
Sbjct: 131 QVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAKIIG----------ALKETGRRPIT 180

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N +NV  +L I  D  G   SKRR+T+STSG VP + ++ + + V LA
Sbjct: 181 NVVMMGMGEPLLNLNNVIPALEIMMDDFGFGLSKRRVTVSTSGVVPALDKLADAVDVALA 240

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298
           ISLHA ++D+R+ +VPIN+KY +EM +D  R Y   SNA   R+T EYVML  INDS   
Sbjct: 241 ISLHAPTDDIRDEIVPINKKYNIEMFLDGVRRYIAKSNANQGRVTVEYVMLDHINDSTEQ 300

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L + LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI
Sbjct: 301 AHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDI 360

Query: 359 LAACGQLKSLS-KRIPKVPRQEMQ 381
            AACGQL      R  +  ++ +Q
Sbjct: 361 DAACGQLAGDVIDRTKRTLKKRLQ 384


>gi|34498996|ref|NP_903211.1| hypothetical protein CV_3541 [Chromobacterium violaceum ATCC 12472]
 gi|81654669|sp|Q7NS85|RLMN_CHRVO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|34104846|gb|AAQ61203.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 364

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 158/377 (41%), Positives = 221/377 (58%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    ++L +   ++G        R  Q+ +W++     DF  M+D+++ +R  L+
Sbjct: 2   KTNLLDFNLDQLTQHFAEMG----EKPFRAKQVMRWMHQMAEDDFDAMTDLAKSLRAKLH 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   +  P ++  + S DGTRKWLL      +G    +ETV+IPE  RGTLCVSSQVGC+
Sbjct: 58  ERAEVRVPSLMTGQASSDGTRKWLL-----DVGTGNGVETVFIPEDDRGTLCVSSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNL+  EI+ Q+  A   +G           V P   R +SN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKAMG-----------VTPKNERVVSNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D  G   S+RR+TLSTSG VP + R+ EE  V LA+SLHA
Sbjct: 162 GMGEPLANFDNVVSAMQIMLDDHGYGLSRRRVTLSTSGLVPQMDRLREECPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +R+++VPIN+KYPL  L+ ACR Y   +    ITFEYVML G+ND P  A  L+++
Sbjct: 222 PNDAIRDVIVPINKKYPLSELMAACRRYLEKAPRDFITFEYVMLDGVNDRPEHARQLLEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++ +P K NLIPFNP+P   Y  S    I  F E ++  GY   +R  RG DI AACGQL
Sbjct: 282 VRDVPCKFNLIPFNPFPNSGYDRSSNNAIRIFREILQEQGYVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +   +  QI
Sbjct: 342 AGQVQDKTRRQAKWTQI 358


>gi|295097942|emb|CBK87032.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 388

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     +F  M+DI++ +R+ L 
Sbjct: 21  KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGTRPITNVVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++ +R+ +VPIN+KY +E  +   R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 241 PNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 360

Query: 364 QLKSLS-KRIPKVPRQEMQ 381
           QL      R  +  R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379


>gi|157374568|ref|YP_001473168.1| hypothetical protein Ssed_1429 [Shewanella sediminis HAW-EB3]
 gi|205829886|sp|A8FT67|RLMN_SHESH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157316942|gb|ABV36040.1| radical SAM enzyme, Cfr family [Shewanella sediminis HAW-EB3]
          Length = 373

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 164/385 (42%), Positives = 225/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ L     ++G        R  Q+ KWIY  G  DF  M++I++ +R  L
Sbjct: 4   KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWIYHFGETDFDAMNNINKVLRAKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +    ++ PEI   + S DGT K+ +      +G   E+ETVYIPE+ R TLCVSSQVGC
Sbjct: 60  SARCEVVAPEISSYQKSADGTIKFAI-----NVGQGQEVETVYIPEEDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV    + +G              +  R I+N+VM
Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIIGQVWRVANFIG----------FQKETGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+T+STSG VP + ++G+ + V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDKLGDALDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR++LVP+N+KYPLE  +   R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   Q+ QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQDSQIS 369


>gi|294637694|ref|ZP_06715971.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
 gi|291089124|gb|EFE21685.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
          Length = 411

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 159/379 (41%), Positives = 212/379 (55%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E    +G        R  QI KWIY     DF  M+DI++ +R  L
Sbjct: 43  EKINLLDLNRKQMREFFAAMG----EKPFRADQIMKWIYHYCCDDFDAMTDINKVLRAKL 98

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW L+           +ETVYIPE  R TLCVSSQVGC
Sbjct: 99  KQVAEIRAPEVAVEQRSSDGTIKWALQVGD------QRVETVYIPEDDRATLCVSSQVGC 152

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 153 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AQKVTGNRPITNVVM 202

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 203 MGMGEPLLNMTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 262

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VPINRKY +E  + + R Y   SNA   R+T EYVML  +ND    A  L
Sbjct: 263 APNDAIRDQIVPINRKYNIETFLASVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQL 322

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  +  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 323 AECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 382

Query: 363 GQLKSLS-KRIPKVPRQEM 380
           GQL      R  +  +++ 
Sbjct: 383 GQLAGEVIDRTKRTLKKQA 401


>gi|261340821|ref|ZP_05968679.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
           35316]
 gi|288317247|gb|EFC56185.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
           35316]
          Length = 388

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     +F  M+DI++ +R+ L 
Sbjct: 21  KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 77  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGTRPITNVVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++ +R+ +VPIN+KY +E  +   R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 241 PNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 360

Query: 364 QLKSLS-KRIPKVPRQEMQ 381
           QL      R  +  R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379


>gi|209763358|gb|ACI79991.1| hypothetical protein ECs3379 [Escherichia coli]
 gi|320646304|gb|EFX15231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H- str. 493-89]
 gi|320651809|gb|EFX20189.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           O157:H- str. H 2687]
          Length = 384

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 158/382 (41%), Positives = 216/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+P   Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|251788745|ref|YP_003003466.1| ribosomal RNA large subunit methyltransferase N [Dickeya zeae
           Ech1591]
 gi|247537366|gb|ACT05987.1| radical SAM enzyme, Cfr family [Dickeya zeae Ech1591]
          Length = 392

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 161/383 (42%), Positives = 218/383 (56%), Gaps = 23/383 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N  +K +L+   R+++     ++G        R  Q+ KWIY     DF  M+DI++ +R
Sbjct: 21  NSNEKINLLDFNRQQMRAFFAELG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVLR 76

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L     I  PE+VDE+ S DGT KW +      +     +ETVYIPE+ R TLCVSSQ
Sbjct: 77  GKLQAIAEIRAPEVVDEQRSSDGTIKWAI------LVDGQRVETVYIPEEDRATLCVSSQ 130

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N
Sbjct: 131 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITN 180

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 181 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA ++++RN ++PIN+KY +E  + A R Y   SNA   R+T EYVML  IND    A
Sbjct: 241 SLHAPTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHA 300

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI 
Sbjct: 301 HQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDID 360

Query: 360 AACGQLKSL-SKRIPKVPRQEMQ 381
           AACGQL      R  +  +++MQ
Sbjct: 361 AACGQLAGEVVDRTKRTLKKKMQ 383


>gi|227328680|ref|ZP_03832704.1| hypothetical protein PcarcW_15616 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 418

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 162/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ +  + +G        R  Q+ KWIY     DF  M+DI++  R  L
Sbjct: 50  EKINLLDLNRQQMRDLFMSMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 105

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+VDE+ S DGT KW +      + G   +ETVYIPE+ R TLCVSSQVGC
Sbjct: 106 QEIAEIRAPEVVDEQRSSDGTIKWAI------LVGGQRVETVYIPEEDRATLCVSSQVGC 159

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G F            +  R I+N+VM
Sbjct: 160 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVM 209

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 210 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 269

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+RN ++PIN+KY +E  + A R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 270 APTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 329

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 330 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 389

Query: 363 GQLKSL-SKRIPKVPRQEM 380
           GQL      R  +  +++M
Sbjct: 390 GQLAGEVVDRTKRTLKKKM 408


>gi|146312652|ref|YP_001177726.1| hypothetical protein Ent638_3011 [Enterobacter sp. 638]
 gi|205829755|sp|A4WD95|RLMN_ENT38 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145319528|gb|ABP61675.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter sp. 638]
          Length = 388

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 159/379 (41%), Positives = 219/379 (57%), Gaps = 23/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E  L++G        R  Q+ KW+Y     +F  M+DI++ +R+ L 
Sbjct: 21  KINLLDLNRQQMREFFLEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V+E+ S DGT KW +            +ETVYIPE+ R TLCVSSQVGC+
Sbjct: 77  DVAEIRAPEVVEEQRSADGTIKWAIAVGD------QRVETVYIPEEDRATLCVSSQVGCA 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGTRPITNVVMM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VP+N+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 241 PNDEIRDEIVPVNKKYNIETFLAAVRRYLAKSNANQGRVTIEYVMLDHVNDETDHAHQLA 300

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACG 360

Query: 364 QLKSLS-KRIPKVPRQEMQ 381
           QL      R  +  R+ MQ
Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379


>gi|152971378|ref|YP_001336487.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238895973|ref|YP_002920709.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
           pneumoniae NTUH-K2044]
 gi|262040254|ref|ZP_06013505.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330007776|ref|ZP_08306073.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
 gi|205829779|sp|A6TCD6|RLMN_KLEP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|150956227|gb|ABR78257.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238548291|dbj|BAH64642.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259042363|gb|EEW43383.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535320|gb|EGF61805.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
          Length = 388

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 161/386 (41%), Positives = 219/386 (56%), Gaps = 23/386 (5%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   K +L+ + R+++ E    +G        R  Q+ KW+Y     DF  M+DI++ +R
Sbjct: 17  NKDAKINLLDLNRQQMREFFKNMG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVLR 72

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L +   I  PE+V+E+ S DGT KW +            +ETVYIPE+ R TLCVSSQ
Sbjct: 73  SKLKEVAEIRAPEVVEEQRSTDGTIKWAIAVGD------QRVETVYIPEEDRATLCVSSQ 126

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G           V  +  R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AVKTTGVRPITN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA ++ +R+ +VPIN+KY +E  +++ R Y   SNA   R+T EYVML  +ND    A
Sbjct: 237 SLHAPNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHA 296

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L  +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI 
Sbjct: 297 HELAALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356

Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384
           AACGQL      R  +  R+ MQ   
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQGEA 382


>gi|327481756|gb|AEA85066.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
           stutzeri DSM 4166]
          Length = 382

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 169/374 (45%), Positives = 222/374 (59%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + +LE     IG      R R  Q+ KWI+  G+ DF  MS++ + +R  L 
Sbjct: 7   KVNLLGLTQPQLESFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PEIV E IS DGTRKW++R     +     +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEIRGPEIVSEDISSDGTRKWVVR-----VASGSCVETVYIPQGGRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D +G   SKR++TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LR+ LVPIN+KYPL++L+ AC+ Y      +R+ T EY +LKG+ND P  A  +I 
Sbjct: 228 PNDALRDQLVPINKKYPLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIA 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  IP KINLIPFNP+P   Y       I  F + + + G++  +RT RG DI AACGQ
Sbjct: 288 LLADIPCKINLIPFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQ 347

Query: 365 LKSLS-KRIPKVPR 377
           L      R  +  R
Sbjct: 348 LVGQVLDRTRRSER 361


>gi|332971507|gb|EGK10457.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330]
          Length = 364

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 162/377 (42%), Positives = 222/377 (58%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+      L E   ++G        R  Q+ +WI+  G  +F+ M+D+++ +R  L 
Sbjct: 2   KTNLLNYDLPALTEHFAQMG----EKPFRAKQVMRWIHQGGAENFEQMTDLAKSLRAKLE 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q   +  P ++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  QQAEVGIPALMTSQESKDGTRKWLL-----DVGTGNGVETVFIPETERGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNL+A EI+ Q+  A   LG           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLSAAEIIGQLWWANKALG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N+DNV  +LSI  D  G   S+RR+T+STSG VP + R+ E++ V LA+SLHA
Sbjct: 162 GMGEPLANYDNVITALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +R+ +VP+N+KYPL+ L+ AC  Y   +    ITFEYVML G+ND P  A  L+++
Sbjct: 222 SNDKVRDEIVPLNKKYPLKELMAACNRYLVKAPRDFITFEYVMLDGVNDKPEHARELVEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K  P K NLIPFNP+P   Y  S  K+I  F E +  +   + +R  RG DI AACGQL
Sbjct: 282 VKDTPCKFNLIPFNPFPNSGYERSSNKNINIFKEILMEADLVTTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               K   K   +  QI
Sbjct: 342 AGQVKDKTKRQEKWQQI 358


>gi|152989129|ref|YP_001346692.1| hypothetical protein PSPA7_1308 [Pseudomonas aeruginosa PA7]
 gi|205829634|sp|A6V0V7|RLMN_PSEA7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|150964287|gb|ABR86312.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 378

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/374 (45%), Positives = 227/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + +LE+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PEIV + IS DGTRKW++R     +     +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  AFAEIRGPEIVSQDISADGTRKWVVR-----VASGSCVETVYIPQGGRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    +L+A E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSDLSAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  +++I  D +G   SKR++TLSTSG VP I ++GE I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL ML+DACR Y      +R+ T EY +LK +ND P  A  +I 
Sbjct: 228 PNDELRNRLVPINKKYPLTMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + + G++  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHKGGFNVTVRTTRGDDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 348 LVGQVMDRTRRSER 361


>gi|224826446|ref|ZP_03699548.1| radical SAM enzyme, Cfr family [Lutiella nitroferrum 2002]
 gi|224601547|gb|EEG07728.1| radical SAM enzyme, Cfr family [Lutiella nitroferrum 2002]
          Length = 364

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 158/378 (41%), Positives = 222/378 (58%), Gaps = 20/378 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+     +L +    +G        R  Q+ +W++  G  DF  M+DI++ +R  L+
Sbjct: 2   KTNLLDFNLAQLTDHFAAMG----EKPFRAKQVMRWMHQMGEADFDAMTDIAKSLRCKLH 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   +  P+++ E+ S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  ESAEVRVPDLMVEQASSDGTRKWLL-----DVGTGNGVETVFIPEDDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNL+  EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  +L I  D  G   S+RR+T+STSG VP + R+ E   V LA+SLHA
Sbjct: 162 GMGEPLANFDNVVSALQIMLDDHGYGLSRRRVTVSTSGMVPQMDRLREACPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +R+++VPIN+KYPL  L+ AC+ Y   +    +TFEYVML  +ND P  A  LI++
Sbjct: 222 PNDAIRDVIVPINKKYPLRELMAACQRYLEKAPRDFVTFEYVMLDDVNDRPEHARQLIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S    I  F E ++ +GY   +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNNAIHRFREILQEAGYVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQIT 383
               +   +   + ++I 
Sbjct: 342 AGQVQDKTRRKTKWIRIE 359


>gi|161502321|ref|YP_001569433.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|205829874|sp|A9MHL3|RLMN_SALAR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|160863668|gb|ABX20291.1| hypothetical protein SARI_00353 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 388

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 160/386 (41%), Positives = 216/386 (55%), Gaps = 23/386 (5%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R
Sbjct: 17  NNEAKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 72

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQ
Sbjct: 73  GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQ 126

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A
Sbjct: 237 SLHAPNDAIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI 
Sbjct: 297 HQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356

Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384
           AACGQL      R  +  R+ MQ   
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQGEA 382


>gi|308050460|ref|YP_003914026.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307632650|gb|ADN76952.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 372

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 163/385 (42%), Positives = 221/385 (57%), Gaps = 22/385 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
              K +L+ + R+ +     ++G        R  Q+ KWIY  G  DF+ M++I++ +R 
Sbjct: 1   MTDKINLLNLDRKAMRAFFAEMG----EKPFRADQVMKWIYHFGADDFEQMTNINKALRA 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L +   I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQV
Sbjct: 57  KLAERAVIVAPEISTSQHSSDGTIKFAI-----DVGNGQEVETVYIPESDRATLCVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L CSFC T  Q   RNL+  EI+ QV      LG          +   +  R ISN+
Sbjct: 112 GCALECSFCSTAQQGFNRNLSVAEIIGQVWRVAKYLG----------LKNETGERPISNV 161

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAIS
Sbjct: 162 VMMGMGEPLLNLSNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAIS 221

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDAL 300
           LHA +++LR++LVP+N+KY +E  + + R Y   S  N  R+T EYVML  INDS   A 
Sbjct: 222 LHAPNDELRDVLVPVNKKYNIETFLASVRTYLTKSYANKGRVTVEYVMLDHINDSTDQAH 281

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L K++K  P KINLIPFNP+PG  Y  S    I  F++ +   G +  +R  RG DI A
Sbjct: 282 ELAKVMKDTPCKINLIPFNPYPGSPYGKSSNSRIDRFAKVLMEYGMTVIVRKTRGDDIDA 341

Query: 361 ACGQLKSLSK-RIPKVPRQEMQITG 384
           ACGQL    + R  ++ ++ MQ  G
Sbjct: 342 ACGQLVGDVRDRTKRMLKKRMQEDG 366


>gi|213580692|ref|ZP_03362518.1| hypothetical protein SentesTyph_05537 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 386

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 160/384 (41%), Positives = 217/384 (56%), Gaps = 23/384 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +N   K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +
Sbjct: 16  LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSS
Sbjct: 72  RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSS 125

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPIT 175

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LA
Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 235

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298
           ISLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    
Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI
Sbjct: 296 AHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDI 355

Query: 359 LAACGQLKSLS-KRIPKVPRQEMQ 381
            AACGQL      R  +  R+ MQ
Sbjct: 356 DAACGQLAGDVIDRTKRTLRKRMQ 379


>gi|226939612|ref|YP_002794685.1| hypothetical protein LHK_00683 [Laribacter hongkongensis HLHK9]
 gi|254807186|sp|C1DD41|RLMN_LARHH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|226714538|gb|ACO73676.1| Radical SAM domain containing protein [Laribacter hongkongensis
           HLHK9]
          Length = 366

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 154/379 (40%), Positives = 217/379 (57%), Gaps = 20/379 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+      L E    +G        R  Q+ +W++  G  DF  M+D+++ +R  L+
Sbjct: 2   KTNLLDFTLPALTEHFAAMG----EKPFRAKQVMRWMHQMGQNDFDAMTDLAKSLRAKLH 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              ++  P ++ E+ S DGTRKWLL      +G    +ETV+IPE  RGTLCVSSQVGC+
Sbjct: 58  DTATVTVPSLMLEQASSDGTRKWLL-----DVGTGNRVETVFIPEDDRGTLCVSSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNL+  EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKSMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N+DNV  ++ I  D  G   S+RR+TLSTSG VP + R+ E+  V LA+SLHA
Sbjct: 162 GMGEPLANYDNVVAAMRIMLDDHGYGLSRRRVTLSTSGLVPAMDRLREDCPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +R+ +VPIN+KYPL  L+ AC  Y   +    +TFEYVML  IND P  A  L+ +
Sbjct: 222 PNDRIRDEIVPINKKYPLRELLAACERYLEKAPRDFVTFEYVMLDQINDRPEHARELVAL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++ +P K NLIPFNP+P   Y  +    +  F + +  +GY + +R  RG DI AACGQL
Sbjct: 282 VRDVPCKFNLIPFNPFPNSGYGRASNNAVRAFRDILAEAGYITTVRKTRGEDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQITG 384
               +   +   + +   G
Sbjct: 342 AGQVQDKTQRKVRWLDKGG 360


>gi|206580011|ref|YP_002237132.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342]
 gi|288934092|ref|YP_003438151.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22]
 gi|290508289|ref|ZP_06547660.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
 gi|254807185|sp|B5XNL2|RLMN_KLEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|206569069|gb|ACI10845.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342]
 gi|288888821|gb|ADC57139.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22]
 gi|289777683|gb|EFD85680.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
          Length = 388

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 161/386 (41%), Positives = 219/386 (56%), Gaps = 23/386 (5%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   K +L+ + R+++ E    +G        R  Q+ KW+Y     DF  M+DI++ +R
Sbjct: 17  NKDAKINLLDLNRQQMREFFKNMG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVLR 72

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L +   I  PE+V+E+ S DGT KW +            +ETVYIPE+ R TLCVSSQ
Sbjct: 73  GKLKEVAEIRAPEVVEEQRSTDGTIKWAIAVGD------QRVETVYIPEEDRATLCVSSQ 126

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G           V  +  R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AVKTTGVRPITN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA ++ +R+ +VPIN+KY +E  +++ R Y   SNA   R+T EYVML  +ND    A
Sbjct: 237 SLHAPNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHA 296

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L  +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI 
Sbjct: 297 HELAALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356

Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384
           AACGQL      R  +  R+ MQ   
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQGEA 382


>gi|296314505|ref|ZP_06864446.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768]
 gi|296838812|gb|EFH22750.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768]
          Length = 364

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 162/377 (42%), Positives = 231/377 (61%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +W++  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  SI  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQASIEIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN +VP+N+KYPL+ L+ ACR Y   +    ITFEYVML GIND  + A  LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDRAQHARELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|313668447|ref|YP_004048731.1| hypothetical protein NLA_11430 [Neisseria lactamica ST-640]
 gi|313005909|emb|CBN87365.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 364

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 161/377 (42%), Positives = 231/377 (61%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +WI+  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLIRHFADMG----EKPFRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  +I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQANIGIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESERGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ +VP+N+KYPL+ L+ ACR Y   +    ITFEYVML GIND  + A  LI +
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDKAQHAHELINL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S +++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSKENIRVFKDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|16761440|ref|NP_457057.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29140863|ref|NP_804205.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56412596|ref|YP_149671.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62181092|ref|YP_217509.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161612716|ref|YP_001586681.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167549454|ref|ZP_02343213.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168232093|ref|ZP_02657151.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168238262|ref|ZP_02663320.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243305|ref|ZP_02668237.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168261436|ref|ZP_02683409.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168466724|ref|ZP_02700578.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168821500|ref|ZP_02833500.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194444721|ref|YP_002041783.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194448097|ref|YP_002046583.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194469426|ref|ZP_03075410.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194738017|ref|YP_002115587.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197361531|ref|YP_002141167.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198245006|ref|YP_002216589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200388216|ref|ZP_03214828.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204929473|ref|ZP_03220547.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205353624|ref|YP_002227425.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207857933|ref|YP_002244584.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|213161946|ref|ZP_03347656.1| hypothetical protein Salmoneentericaenterica_18887 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213425329|ref|ZP_03358079.1| hypothetical protein SentesTyphi_06363 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649661|ref|ZP_03379714.1| hypothetical protein SentesTy_21620 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213857325|ref|ZP_03384296.1| hypothetical protein SentesT_19305 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224582938|ref|YP_002636736.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|289825424|ref|ZP_06544661.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|75481689|sp|Q57LI4|RLMN_SALCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81362045|sp|Q5PNI4|RLMN_SALPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81628152|sp|Q8Z4P2|RLMN_SALTI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829875|sp|A9N1Z8|RLMN_SALPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807202|sp|B5FR66|RLMN_SALDC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807203|sp|B5R584|RLMN_SALEP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807204|sp|B5RCZ4|RLMN_SALG2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807205|sp|B4TD95|RLMN_SALHS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807206|sp|B4T0Q1|RLMN_SALNS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807207|sp|C0PYM8|RLMN_SALPC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807208|sp|B5BAY3|RLMN_SALPK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807209|sp|B4TR97|RLMN_SALSV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|25320182|pir||AD0822 conserved hypothetical protein STY2770 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503740|emb|CAD02728.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136488|gb|AAO68054.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56126853|gb|AAV76359.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128725|gb|AAX66428.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161362080|gb|ABX65848.1| hypothetical protein SPAB_00414 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403384|gb|ACF63606.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194406401|gb|ACF66620.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194455790|gb|EDX44629.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194713519|gb|ACF92740.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195630780|gb|EDX49372.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197093007|emb|CAR58440.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197288805|gb|EDY28178.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197939522|gb|ACH76855.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605314|gb|EDZ03859.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204321192|gb|EDZ06392.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205273405|emb|CAR38380.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325472|gb|EDZ13311.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205333531|gb|EDZ20295.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337567|gb|EDZ24331.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205342014|gb|EDZ28778.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205349318|gb|EDZ35949.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206709736|emb|CAR34088.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467465|gb|ACN45295.1| hypothetical protein SPC_1129 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|320087020|emb|CBY96789.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503
           methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|322613730|gb|EFY10669.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322619527|gb|EFY16403.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322625032|gb|EFY21861.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322629525|gb|EFY26301.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634044|gb|EFY30781.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322635518|gb|EFY32229.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322639806|gb|EFY36485.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322644428|gb|EFY40969.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648573|gb|EFY45022.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655207|gb|EFY51516.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658254|gb|EFY54520.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664255|gb|EFY60452.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669422|gb|EFY65571.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322673149|gb|EFY69255.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676541|gb|EFY72609.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322683291|gb|EFY79305.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685823|gb|EFY81816.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|322715579|gb|EFZ07150.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|323194766|gb|EFZ79954.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323199546|gb|EFZ84637.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204679|gb|EFZ89677.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323208127|gb|EFZ93072.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323210149|gb|EFZ95050.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323217017|gb|EGA01739.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221815|gb|EGA06219.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225006|gb|EGA09261.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323229295|gb|EGA13419.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323235390|gb|EGA19474.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323237424|gb|EGA21487.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323245178|gb|EGA29179.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248881|gb|EGA32807.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323253168|gb|EGA37000.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255402|gb|EGA39170.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262039|gb|EGA45604.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323266350|gb|EGA49838.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269819|gb|EGA53269.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326624345|gb|EGE30690.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326628724|gb|EGE35067.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 388

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 160/384 (41%), Positives = 217/384 (56%), Gaps = 23/384 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +N   K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +
Sbjct: 16  LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSS
Sbjct: 72  RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSS 125

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPIT 175

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LA
Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 235

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298
           ISLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    
Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI
Sbjct: 296 AHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDI 355

Query: 359 LAACGQLKSLS-KRIPKVPRQEMQ 381
            AACGQL      R  +  R+ MQ
Sbjct: 356 DAACGQLAGDVIDRTKRTLRKRMQ 379


>gi|120554052|ref|YP_958403.1| radical SAM protein [Marinobacter aquaeolei VT8]
 gi|205829787|sp|A1TZP7|RLMN_MARAV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120323901|gb|ABM18216.1| 23S rRNA m(2)A-2503 methyltransferase [Marinobacter aquaeolei VT8]
          Length = 369

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 160/380 (42%), Positives = 230/380 (60%), Gaps = 21/380 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM + +LE     +G      R R  Q+ +W++ RG+ DF  M+++S+ +R  L
Sbjct: 6   EKVNLLGMPKAKLEAFFETLG----EKRFRAQQVLQWMHQRGVDDFDQMTNMSKSLREQL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+V ++ S DGTRKW++R           +ETV IP+  RGTLCVSSQ+GC
Sbjct: 62  KEVAEIRGPEVVYDETSKDGTRKWVMRM-----DNGNSVETVLIPDGERGTLCVSSQIGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C+FC TG +   RNLTA EI+ QV +AR     F   +           R I+N+VM
Sbjct: 117 SLDCTFCSTGKRGFNRNLTAAEIIGQVWVARRAFMPFDPND-----------RPITNVVM 165

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV  ++++  + +    SKRR+TLSTSG VP + R+GE   V LAISLH
Sbjct: 166 MGMGEPLLNFENVVDAMNLMMEDLAYGISKRRVTLSTSGVVPALDRLGEVTDVSLAISLH 225

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDALNLI 303
           A +++LRN LVP+N+KYP+  L+ A R Y   L + R+ T EY +++G+ND P  A  L+
Sbjct: 226 APNDELRNQLVPLNKKYPIAELLAATRRYLSRLPDKRKATIEYTVIEGVNDQPEHARELV 285

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+P KINLIPFNP+P  ++          F   +  +GY + IRT RG DI AACG
Sbjct: 286 VLLKGLPCKINLIPFNPFPESDFRRPSMNATRRFQTVLNEAGYVTTIRTTRGDDIDAACG 345

Query: 364 QLKSLSKRIPKVPRQEMQIT 383
           QL    +   +  ++ + + 
Sbjct: 346 QLVGRVEDRTRRSQRYIAVQ 365


>gi|227112689|ref|ZP_03826345.1| hypothetical protein PcarbP_06994 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 418

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ +  + +G        R  Q+ KWIY     DF  M+DI++  R  L
Sbjct: 50  EKINLLDLNRQQMRDLFMSMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 105

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+VDE+ S DGT KW +      + G   +ETVYIPE+ R TLCVSSQVGC
Sbjct: 106 QEIAEIRAPEVVDEQRSSDGTIKWAI------LVGGQRVETVYIPEEDRATLCVSSQVGC 159

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G F            +  R I+N+VM
Sbjct: 160 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVM 209

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 210 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 269

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+RN ++PIN+KY +E  + A R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 270 APTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 329

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 330 AECLKNTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 389

Query: 363 GQLKSL-SKRIPKVPRQEM 380
           GQL      R  +  ++++
Sbjct: 390 GQLAGEVVDRTKRTLKKKL 408


>gi|329120380|ref|ZP_08249047.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462335|gb|EGF08661.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 362

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 158/377 (41%), Positives = 228/377 (60%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L E   ++G        R  Q+ +W++  G  DF  M+D+++ +R  L 
Sbjct: 2   KNNLLNYDLKTLTEWFAEMG----ERPFRAKQVMRWMHWGGAADFAEMTDLAKSLRAKLE 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +H  +  P ++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EHACVGAPALMASQESRDGTRKWLL-----DVGTGNGVETVFIPESERGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLT  EI+ Q+  A   LG  P  E           R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTTAEIVGQLWWANKALGATPKDE-----------RVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N+DNV +SLS+  D  G   S+RR+T+STSG VP + R+ E++ V LA+SLHA
Sbjct: 162 GMGEPLANYDNVVRSLSVMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +R+ +VP+N+KYPL+ L+ ACR Y   +    +TFEYVML G+ND    A  L+K+
Sbjct: 222 SNDHVRDQIVPLNKKYPLKDLMAACRRYLVKAPRDFVTFEYVMLDGVNDKAEHARELLKL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++ +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VEDVPCKFNLIPFNPFPHSGYERSSAENIRIFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               K   +  ++  Q+
Sbjct: 342 AGQVKDKTRRQQKWQQL 358


>gi|261820570|ref|YP_003258676.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
           wasabiae WPP163]
 gi|261604583|gb|ACX87069.1| radical SAM enzyme, Cfr family [Pectobacterium wasabiae WPP163]
          Length = 400

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 164/379 (43%), Positives = 221/379 (58%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E  + +G        R  Q+ KWIY     DF  M+DI++  R  L
Sbjct: 32  EKINLLDLNRQQMRELFMSMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 87

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+VDE+ S DGT KW +      + G   +ETVYIPE+ R TLCVSSQVGC
Sbjct: 88  QEIAEIRAPEVVDEQRSSDGTIKWAI------LVGGQRVETVYIPEEDRATLCVSSQVGC 141

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G F            +  R I+N+VM
Sbjct: 142 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVM 191

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 192 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 251

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+RN ++PIN+KY +EM + A R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 252 APTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 311

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 312 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 371

Query: 363 GQLKSL-SKRIPKVPRQEM 380
           GQL      R  +  +++M
Sbjct: 372 GQLAGEVVDRTKRTLKKKM 390


>gi|330504682|ref|YP_004381551.1| radical SAM protein [Pseudomonas mendocina NK-01]
 gi|328918968|gb|AEB59799.1| radical SAM protein [Pseudomonas mendocina NK-01]
          Length = 382

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 167/378 (44%), Positives = 226/378 (59%), Gaps = 21/378 (5%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R
Sbjct: 3   NTTGKINLLGLTQPEMEQFFESIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKALR 58

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L     I  PE+V E IS DGTRKW++R     +     +ETVYIP+  RGTLCVSSQ
Sbjct: 59  EKLEASAEIRGPEVVSENISADGTRKWVVR-----VASGSCVETVYIPQNGRGTLCVSSQ 113

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC+L CSFC TG Q    +LT+ EI+ QV +A    G  P   D          R I+N
Sbjct: 114 AGCALDCSFCSTGKQGFNSDLTSAEIIGQVWIANKSFGTVPAKID----------RAITN 163

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL NFDNV  ++ I  D +G   SKR++TLSTSG VP I ++ E I V LA+
Sbjct: 164 VVMMGMGEPLLNFDNVVSAMQIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLAL 223

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDAL 300
           SLHA +++LRN LVPIN+KYPL+ML+ AC+ Y      +R+ T EY +LKG+ND    A 
Sbjct: 224 SLHAPNDELRNQLVPINKKYPLDMLLAACKRYVSKLGEKRVLTIEYTLLKGVNDQLEHAE 283

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            +I +L  +P KINLIPFNP+P   Y       I  F + + ++G++  +R  RG DI A
Sbjct: 284 QMIALLADVPCKINLIPFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRATRGDDIDA 343

Query: 361 ACGQL-KSLSKRIPKVPR 377
           ACGQL   +  R  +  R
Sbjct: 344 ACGQLVGQVMDRTRRSER 361


>gi|253689386|ref|YP_003018576.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755964|gb|ACT14040.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 419

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 163/379 (43%), Positives = 221/379 (58%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ +  + +G        R  Q+ KWIY     DF  M+DI++  R  L
Sbjct: 51  EKINLLDLNRQQMRDLFISMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 106

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+VDE+ S DGT KW +      + G   +ETVYIPE+ R TLCVSSQVGC
Sbjct: 107 QEIAEIRAPEVVDEQRSSDGTIKWAI------LVGGQRVETVYIPEEDRATLCVSSQVGC 160

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G F            +  R I+N+VM
Sbjct: 161 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVM 210

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 211 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 270

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+RN ++PIN+KY +EM + A R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 271 APTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 330

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 331 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 390

Query: 363 GQLKSL-SKRIPKVPRQEM 380
           GQL      R  +  +++M
Sbjct: 391 GQLAGEVVDRTKRTLKKKM 409


>gi|16765845|ref|NP_461460.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167991834|ref|ZP_02572933.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|197263041|ref|ZP_03163115.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|81594911|sp|Q8ZN52|RLMN_SALTY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|16421069|gb|AAL21419.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197241296|gb|EDY23916.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205329931|gb|EDZ16695.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247721|emb|CBG25549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994643|gb|ACY89528.1| hypothetical protein STM14_3097 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159074|emb|CBW18588.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913512|dbj|BAJ37486.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222774|gb|EFX47845.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323130853|gb|ADX18283.1| radical SAM superfamily protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332989452|gb|AEF08435.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 388

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 160/383 (41%), Positives = 216/383 (56%), Gaps = 23/383 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R
Sbjct: 17  NKETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 72

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQ
Sbjct: 73  GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQ 126

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A
Sbjct: 237 SLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI 
Sbjct: 297 HQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356

Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381
           AACGQL      R  +  R+ MQ
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379


>gi|325272138|ref|ZP_08138570.1| radical SAM protein [Pseudomonas sp. TJI-51]
 gi|324102734|gb|EGC00149.1| radical SAM protein [Pseudomonas sp. TJI-51]
          Length = 381

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 168/374 (44%), Positives = 224/374 (59%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKALREKLE 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V E IS DGTRKW++R     +     +ETVYIP   RGTLCVSSQ GC+
Sbjct: 63  AVAEIRPPEVVSEDISADGTRKWVIR-----VASGSCVETVYIPTDDRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV LA    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKID----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL+ML+++C  Y      +R+ T EY +LK +ND P  A  +I+
Sbjct: 228 PNDELRNKLVPINKKYPLKMLLESCMGYMATLGGKRVLTIEYTLLKDVNDQPEHAAQMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ +P KINLIPFNP+P   Y       I  F + +   G++   RT RG DI AACGQ
Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   ++ R  +  R
Sbjct: 348 LVGQVNDRTRRSER 361


>gi|126175195|ref|YP_001051344.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
           OS155]
 gi|205829878|sp|A3D6W2|RLMN_SHEB5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|125998400|gb|ABN62475.1| radical SAM enzyme, Cfr family [Shewanella baltica OS155]
          Length = 373

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 167/385 (43%), Positives = 224/385 (58%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ +      +G        R  Q+ KW+Y  G+ DF+ M++I++ +R  L
Sbjct: 4   KKINLLDLDRKAMRALFADMG----EKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC
Sbjct: 60  AARCEIVAPEISSFQKSTDGTIKFAI-----NVGQGQEVETVYIPEDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG Q   RNLT  EI+ Q+      LG              +  R I+N+VM
Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ I V LA+S+H
Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A +++LR+ILVPIN+KY L+  +   R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 225 APNDELRDILVPINKKYQLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344

Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383
           GQL    +  +KR+ K   QE QI+
Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369


>gi|307132063|ref|YP_003884079.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
 gi|306529592|gb|ADM99522.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
          Length = 392

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 160/383 (41%), Positives = 218/383 (56%), Gaps = 23/383 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N  +K +L+   R+++     ++G        R  Q+ KW+Y     DF  M+DI++ +R
Sbjct: 21  NSNEKINLLDFNRQQMRAFFAELG----EKPFRADQVMKWMYHYCCDDFNQMTDINKVLR 76

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L     I  PE+VDE+ S DGT KW +      +     +ETVYIPE+ R TLCVSSQ
Sbjct: 77  GKLQAIAEIRAPEVVDEQRSSDGTIKWAI------LVDGQRVETVYIPEEDRATLCVSSQ 130

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N
Sbjct: 131 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITN 180

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 181 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA ++++RN ++PIN+KY +E  + A R Y   SNA   R+T EYVML  IND    A
Sbjct: 241 SLHAPTDEIRNEIMPINKKYDIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHA 300

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI 
Sbjct: 301 HQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDID 360

Query: 360 AACGQLKSL-SKRIPKVPRQEMQ 381
           AACGQL      R  +  +++MQ
Sbjct: 361 AACGQLAGEVVDRTKRTLKKKMQ 383


>gi|317490866|ref|ZP_07949302.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920413|gb|EFV41736.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 419

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 220/382 (57%), Gaps = 23/382 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N  +K +L+ + R+++ E   K+G        R  Q+ KW+Y     +F  M+DI++ +R
Sbjct: 48  NTSEKINLLDLDRQQMREFFAKLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 103

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           + L +   I  PE+ +E+ S DGT KW ++           +ETVYIPE  R TLCVSSQ
Sbjct: 104 NKLKEIAEIRAPEVAEEQRSTDGTIKWAIQVGD------QRVETVYIPEDDRATLCVSSQ 157

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N
Sbjct: 158 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AHKVTGQRPITN 207

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N +NV  +++I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 208 VVMMGMGEPLLNLNNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALEKLGDMIDVALAI 267

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA ++++R+ +VPINRKY +E  + A R Y   SNA   R+T EYVML  IND    A
Sbjct: 268 SLHAPTDEIRDEIVPINRKYNIETFLGAVRRYLEKSNANQGRVTVEYVMLDHINDGMEHA 327

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G++  +R  RG DI 
Sbjct: 328 HQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTVIVRKTRGDDID 387

Query: 360 AACGQLKSLS-KRIPKVPRQEM 380
           AACGQL      R  +  +++M
Sbjct: 388 AACGQLAGDVIDRTKRTMKKKM 409


>gi|330969073|gb|EGH69139.1| hypothetical protein PSYAR_01077 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 382

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/374 (45%), Positives = 228/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++CR Y      +R+ T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 348 LVGQVMDRTRRSER 361


>gi|289626156|ref|ZP_06459110.1| radical SAM protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649062|ref|ZP_06480405.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330869580|gb|EGH04289.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 382

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 171/374 (45%), Positives = 228/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+D+CR Y      +R+ T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 348 LVGQVMDRTRRSER 361


>gi|167644157|ref|YP_001681820.1| radical SAM protein [Caulobacter sp. K31]
 gi|205829696|sp|B0T387|RLMN_CAUSK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|167346587|gb|ABZ69322.1| radical SAM enzyme, Cfr family [Caulobacter sp. K31]
          Length = 404

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 197/380 (51%), Positives = 270/380 (71%), Gaps = 16/380 (4%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHV-RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
            +L G+ R +L  AL + G+ +    +MR +QI++W++ RG+ DF  M+D+++E R  L 
Sbjct: 26  INLSGLTRAQLLVALTESGVAEHGKAKMRATQIFRWMHHRGVTDFALMTDVAKETRARLA 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
           + F++  PE+V+ ++S DGTRKWL+R         +E+ETVYIP   R G LCVSSQVGC
Sbjct: 86  ERFTVSRPEVVERQVSKDGTRKWLIRMAP-----GIEVETVYIPSVGRAGALCVSSQVGC 140

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC+TGTQ LVRNLTA EI+ QV +A+  L ++P  ++          R +SNIV 
Sbjct: 141 TLNCSFCHTGTQALVRNLTAAEIVAQVQIAKDDLAEWPSDKE---------DRLLSNIVF 191

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  +V  ++ I SD+ G+  S+RRIT+STSG VP +  +G++   MLAISLH
Sbjct: 192 MGMGEPLYNLGHVADAIEIISDNEGIGISRRRITVSTSGVVPQLEALGDKTQAMLAISLH 251

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR++LVP+N+KYPLE L+   R YPGLSNARR+TFEYVMLKG+NDSP +A  L+K
Sbjct: 252 ATNDALRDVLVPLNKKYPLEDLMAGVRAYPGLSNARRVTFEYVMLKGVNDSPDEARALVK 311

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KGIPAKINLIPFNPWPG +Y+CSD   I  F   + ++GYSSPIRTPRG DILAACGQ
Sbjct: 312 LIKGIPAKINLIPFNPWPGTDYVCSDWAAIEAFGAILNKAGYSSPIRTPRGRDILAACGQ 371

Query: 365 LKSLSKRIPKVPRQEMQITG 384
           LKS S+++     +++ +  
Sbjct: 372 LKSESEKVRASAMRKLSMAA 391


>gi|261401249|ref|ZP_05987374.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
 gi|269208732|gb|EEZ75187.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
          Length = 364

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 162/377 (42%), Positives = 231/377 (61%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +WI+  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLIRHFADMG----EKPFRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  +I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQANIGIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  SLSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTSLSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ +VP+N+KYPL+ L+ ACR Y   +    ITFEYVML GIND  + A  LI +
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDKAQHAHELINL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S +++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSKENIRVFKDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|197249479|ref|YP_002147478.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|254807201|sp|B5F1A0|RLMN_SALA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|197213182|gb|ACH50579.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 388

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 160/383 (41%), Positives = 216/383 (56%), Gaps = 23/383 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R
Sbjct: 17  NKEAKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 72

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQ
Sbjct: 73  GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQ 126

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A
Sbjct: 237 SLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI 
Sbjct: 297 HQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356

Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381
           AACGQL      R  +  R+ MQ
Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379


>gi|254236710|ref|ZP_04930033.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126168641|gb|EAZ54152.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 379

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/374 (45%), Positives = 226/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + +LE+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 8   KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 63

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PEIV + IS DGTRKW++R     +     +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 64  ASAEIRGPEIVSQDISADGTRKWVVR-----VASGSCVETVYIPQGGRGTLCVSSQAGCA 118

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    +LTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 119 LDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 168

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GM EPL NFDNV  +++I  D +G   SKR++TLSTSG VP I ++GE I V LA+SLHA
Sbjct: 169 GMSEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 228

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL ML+DACR Y      +R+ T EY +LK +ND P  A  +I 
Sbjct: 229 PNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 288

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + + G++  +RT RG DI AACGQ
Sbjct: 289 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQ 348

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 349 LVGQVMDRTRRSER 362


>gi|66044493|ref|YP_234334.1| hypothetical protein Psyr_1245 [Pseudomonas syringae pv. syringae
           B728a]
 gi|75503082|sp|Q4ZX26|RLMN_PSEU2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|63255200|gb|AAY36296.1| Conserved hypothetical protein 48 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 382

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/374 (45%), Positives = 228/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++CR Y      +R+ T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 348 LVGQVMDRTRRSER 361


>gi|71738083|ref|YP_273575.1| radical SAM protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257487201|ref|ZP_05641242.1| radical SAM protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|298486020|ref|ZP_07004094.1| 23S rRNA m(2)A2503 methyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|123761313|sp|Q48LZ7|RLMN_PSE14 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|71558636|gb|AAZ37847.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298159497|gb|EFI00544.1| 23S rRNA m(2)A2503 methyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320322924|gb|EFW79014.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329953|gb|EFW85941.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330874705|gb|EGH08854.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330985011|gb|EGH83114.1| radical SAM protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009183|gb|EGH89239.1| radical SAM protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 382

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 171/374 (45%), Positives = 228/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+D+CR Y      +R+ T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 348 LVGQVMDRTRRSER 361


>gi|28868638|ref|NP_791257.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|81732046|sp|Q886Z3|RLMN_PSESM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|28851876|gb|AAO54952.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331019383|gb|EGH99439.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 382

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 168/374 (44%), Positives = 228/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVP+N+KYPL++L+++CR Y      +R+ T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 348 LVGQVMDRTRRSER 361


>gi|309379239|emb|CBX22196.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 364

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 159/377 (42%), Positives = 230/377 (61%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +WI+  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLIRHFADMG----EKPFRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  +I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQANIGIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESERGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG V  + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDYGYGLSRRRVTVSTSGMVSQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ +VP+N+KYPL+ L+ ACR Y   +    ITFEYVML G+ND  + A  LI +
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGVNDKAQHAHELINL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S +++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSKENIRVFKDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|237800040|ref|ZP_04588501.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022895|gb|EGI02952.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 382

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/374 (45%), Positives = 228/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++CR Y      +R+ T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 348 LVGQVMDRTRRSER 361


>gi|330957524|gb|EGH57784.1| radical SAM protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 382

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/374 (45%), Positives = 227/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDVMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++CR Y      +R+ T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDQVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 348 LVGQVMDRTRRSER 361


>gi|289677951|ref|ZP_06498841.1| hypothetical protein PsyrpsF_31988 [Pseudomonas syringae pv.
           syringae FF5]
 gi|302185748|ref|ZP_07262421.1| hypothetical protein Psyrps6_05363 [Pseudomonas syringae pv.
           syringae 642]
 gi|330895885|gb|EGH28170.1| hypothetical protein PSYJA_03834 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 382

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 168/374 (44%), Positives = 228/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVP+N+KYPL++L+++CR Y      +R+ T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 348 LVGQVMDRTRRSER 361


>gi|300717954|ref|YP_003742757.1| Fe-S containing enzyme [Erwinia billingiae Eb661]
 gi|299063790|emb|CAX60910.1| putative Fe-S containing enzyme [Erwinia billingiae Eb661]
          Length = 389

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 158/383 (41%), Positives = 218/383 (56%), Gaps = 23/383 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E    +G        R  Q+ KW+Y     DF  M+DI++  R+ L
Sbjct: 21  EKINLLDLNRQQMREFFASMG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVFRNRL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+  E+ S DGT KW +        G  ++ETVYIPEK R TLCVSSQVGC
Sbjct: 77  KEVAEIRAPEVATEQRSTDGTIKWAI------TVGGQQVETVYIPEKDRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ASKITGTRPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VP+N+KY +E  + +   Y   SNA   R+T EYVML  +NDS  +A  L
Sbjct: 241 APNDTIRDEIVPVNKKYNIETFLASVSRYIAKSNANQGRVTIEYVMLDHVNDSTDNAHEL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 301 AALLKNTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360

Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384
           GQL      R  +  R++M    
Sbjct: 361 GQLAGEVIDRTKRTLRKKMAGEA 383


>gi|110834724|ref|YP_693583.1| Fe-S-cluster redox protein [Alcanivorax borkumensis SK2]
 gi|123050394|sp|Q0VND7|RLMN_ALCBS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|110647835|emb|CAL17311.1| conserved Fe-S-cluster redox protein, putative [Alcanivorax
           borkumensis SK2]
          Length = 381

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 159/380 (41%), Positives = 224/380 (58%), Gaps = 22/380 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   +K +L+G+ R ++EE  L +G      + R  Q+ KWI+      F+ M+D+ + +
Sbjct: 1   MTAQQKVNLLGLSRPQMEEFFLTMG----EKKFRAQQVLKWIHHHQADSFEQMTDVGKAL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L++   I  P++  E IS DGTRKW+             +ETV+IP+  RGTLCVSS
Sbjct: 57  RQKLSEVAEIRGPKVTHESISRDGTRKWVFEM-----DNGGAVETVFIPDGRRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ CSFC TG Q   R++T+ EI+ QV  A    G                   I+
Sbjct: 112 QVGCAVDCSFCSTGKQGFQRDMTSAEIIGQVWQASRAFGPRRNL----------GQHPIT 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  ++ I  D +G    K+RIT+STSG +P + ++ E++ V LA
Sbjct: 162 NVVMMGMGEPLLNYDKVLTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDLDVSLA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRD 298
           +SLHA +++LRN LVP+NRKYPL+ L+ AC+ Y          IT EYVML+ +ND P  
Sbjct: 222 VSLHAPNDELRNQLVPLNRKYPLKDLMAACKRYSKNITHRHNTITMEYVMLRDVNDKPEH 281

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L+K+L GIP K+NLIPFNP+P   Y  S + DI+ F + +  +G  + +RT RG DI
Sbjct: 282 ARQLVKLLNGIPVKVNLIPFNPFPHAGYERSRKNDILEFHKYLNDNGVMTTVRTTRGDDI 341

Query: 359 LAACGQLKSLSK-RIPKVPR 377
            AACGQL    K R  +  R
Sbjct: 342 DAACGQLVGQVKDRTRRSER 361


>gi|170723489|ref|YP_001751177.1| radical SAM protein [Pseudomonas putida W619]
 gi|205829826|sp|B1JDQ5|RLMN_PSEPW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|169761492|gb|ACA74808.1| radical SAM enzyme, Cfr family [Pseudomonas putida W619]
          Length = 381

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 168/374 (44%), Positives = 224/374 (59%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKALREKLE 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V E IS DGTRKW++R     +     +ETVYIP   RGTLCVSSQ GC+
Sbjct: 63  AVAEIRPPEVVSEDISADGTRKWVIR-----VASGSCVETVYIPTDDRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV LA    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKID----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL+ML+++C  Y      +R+ T EY +LK +ND P  A  +I+
Sbjct: 228 PNDELRNQLVPINKKYPLKMLLESCMGYMATLGGKRVLTVEYTLLKDVNDQPEHAAQMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ +P KINLIPFNP+P   Y       I  F + +   G++   RT RG DI AACGQ
Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   ++ R  +  R
Sbjct: 348 LVGQVNDRTRRSER 361


>gi|330872882|gb|EGH07031.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965912|gb|EGH66172.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 382

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/374 (45%), Positives = 228/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISTDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++CR Y      +R+ T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 348 LVGQVMDRTRRSER 361


>gi|152979682|ref|YP_001345311.1| hypothetical protein Asuc_2030 [Actinobacillus succinogenes 130Z]
 gi|205829707|sp|A6VQX9|RLMN_ACTSZ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|150841405|gb|ABR75376.1| radical SAM enzyme, Cfr family [Actinobacillus succinogenes 130Z]
          Length = 371

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 155/380 (40%), Positives = 219/380 (57%), Gaps = 22/380 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 3   EKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC
Sbjct: 59  KQVAEIKAPEVAVEQRSSDGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 113 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGIRPITNVVM 162

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+T+STSG VP + ++ E I V LAISLH
Sbjct: 163 MGMGEPLLNMANVVPAMEIMLDDFAYGLSKRRVTISTSGVVPALDKLPEMIDVALAISLH 222

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 223 APNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVLLDHVNDGTEHAHQL 282

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 283 ADVLKNTPCKINLIPWNPFPEAPYAKSSNSRVDRFQKTLMEYGFTVTVRKTRGDDIDAAC 342

Query: 363 GQLKSLSKRIPKVPRQEMQI 382
           GQL        K   Q+ Q 
Sbjct: 343 GQLAGDVIDRTKRTAQKKQF 362


>gi|311694381|gb|ADP97254.1| conserved hypothetical protein [marine bacterium HP15]
          Length = 370

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 160/380 (42%), Positives = 228/380 (60%), Gaps = 20/380 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM + +LE     +G      R R +Q+ +WI+ RG  DF  M+++S+ +R  L
Sbjct: 6   EKTNLLGMPKAKLEAFFESLG----EKRFRATQVLQWIHQRGADDFDQMTNMSKALREKL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+V ++ S DGTRKW++R           +ETV IP+  RGTLCVSSQ+GC
Sbjct: 62  KQVAEIRGPEVVYDETSKDGTRKWVMRM-----DNGNSVETVLIPDGERGTLCVSSQIGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C+FC TG +   RNLTA E++ QV +AR     F           P   R I+N+VM
Sbjct: 117 SLDCTFCSTGKRGFNRNLTAAEVIGQVWVARKAFMPF----------EPGPDRPITNVVM 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++++  + +    SKRR+TLSTSG VP + R+ E   V LAISLH
Sbjct: 167 MGMGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTLSTSGVVPALDRLSEVTDVSLAISLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLI 303
           A +++LRN LVP+N+KYP+  L+ A + Y   L + R+ T EY +++G+ND P  A  L 
Sbjct: 227 APNDELRNKLVPLNKKYPISELLAATKRYFARLPDKRKATIEYTVIEGMNDQPEHARELA 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L+ +P KINLIPFNP+P  ++          F   +  +GY + IRT RG DI AACG
Sbjct: 287 VLLRDLPCKINLIPFNPFPESDFRRPSMNATRRFQNVLNEAGYITTIRTTRGDDIDAACG 346

Query: 364 QLKSLSKRIPKVPRQEMQIT 383
           QL    +   +  ++ +Q+ 
Sbjct: 347 QLVGRVEDRTRRSQRYIQVQ 366


>gi|213971521|ref|ZP_03399632.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1]
 gi|301386126|ref|ZP_07234544.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060174|ref|ZP_07251715.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302135117|ref|ZP_07261107.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213923713|gb|EEB57297.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1]
          Length = 382

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/374 (45%), Positives = 227/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISTDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  +   I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMRLMMDDLGYGISKRRVTLSTSGVVPMIDELSRHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++CR Y      +R+ T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 348 LVGQVMDRTRRSER 361


>gi|183599740|ref|ZP_02961233.1| hypothetical protein PROSTU_03244 [Providencia stuartii ATCC 25827]
 gi|188022000|gb|EDU60040.1| hypothetical protein PROSTU_03244 [Providencia stuartii ATCC 25827]
          Length = 393

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 161/382 (42%), Positives = 220/382 (57%), Gaps = 23/382 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N  +K +L+ + R+++ E   ++G        R  Q+ KWIY     DF  M+DI++ +R
Sbjct: 22  NNTQKINLLDLNRKQMREFFAQMG----EKPFRADQVMKWIYHYCYDDFDQMTDINKALR 77

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L +   I  PE+ +E+ S DGT KW +           ++ETVYIPE  R TLCVSSQ
Sbjct: 78  AKLKEVAEIRAPEVAEEQRSADGTIKWAITVGD------QQVETVYIPEDDRATLCVSSQ 131

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC T  Q   RNL   EI+ QV  A  ++G           +  S  R I+N
Sbjct: 132 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSSGRRPITN 181

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAI
Sbjct: 182 VVMMGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 241

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDA 299
           SLHA ++D+R+ +VPIN+KY +E  + + R Y   SN    R+T EYVML  INDS   A
Sbjct: 242 SLHAPTDDIRDDIVPINKKYNIETFLSSVRRYLSKSNANGGRVTVEYVMLDHINDSIEQA 301

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L + LK  P+KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI 
Sbjct: 302 HQLAECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 361

Query: 360 AACGQLKSLS-KRIPKVPRQEM 380
           AACGQL      R  +  ++ M
Sbjct: 362 AACGQLAGEVIDRTKRTLKKRM 383


>gi|254427443|ref|ZP_05041150.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
 gi|196193612|gb|EDX88571.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
          Length = 380

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 159/380 (41%), Positives = 224/380 (58%), Gaps = 22/380 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   +K +L+G+ R ++EE  L +G      + R  Q+ KWI+      F+ M+D+ + +
Sbjct: 1   MTAQQKVNLLGLSRPQMEEFFLTMG----EKKFRAQQVLKWIHHHQADSFEQMTDVGKAL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L++   I  P++  E IS DGTRKW+             +ETV+IP+  RGTLCVSS
Sbjct: 57  RQKLSEVAEIRGPKVTHESISRDGTRKWVFEM-----DNGGAVETVFIPDGRRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ CSFC TG Q   R++T+ EI+ QV  A    G                   I+
Sbjct: 112 QVGCAVDCSFCSTGKQGFQRDMTSAEIIGQVWQASRAFGPRRNL----------GQHPIT 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  ++ I  D +G    K+RIT+STSG +P + ++ E++ V LA
Sbjct: 162 NVVMMGMGEPLLNYDKVLTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDLDVSLA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRD 298
           +SLHA +++LRN LVP+NRKYPL+ L+ AC+ Y          IT EYVML+ +ND P  
Sbjct: 222 VSLHAPNDELRNQLVPLNRKYPLKDLMAACKSYSKNITHRHNTITMEYVMLRDVNDKPEH 281

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L+K+L GIP K+NLIPFNP+P   Y  S + DI+ F + +  +G  + +RT RG DI
Sbjct: 282 ARQLVKLLNGIPVKVNLIPFNPFPHAGYERSRKNDILEFHKYLNDNGVMTTVRTTRGDDI 341

Query: 359 LAACGQLKSLSK-RIPKVPR 377
            AACGQL    K R  +  R
Sbjct: 342 DAACGQLVGQVKDRTRRSER 361


>gi|161170314|gb|ABX59284.1| predicted FeS cluster redox protein [uncultured marine bacterium
           EB000_55B11]
 gi|297183841|gb|ADI19964.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 390

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 205/376 (54%), Positives = 277/376 (73%), Gaps = 13/376 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            ++IG+ R+ L  AL +IG P + ++MRT+QIW+W+YV+G ++F+ M+++S++ R+LL Q
Sbjct: 24  PNIIGLQRKALANALNEIGTPAKQIKMRTAQIWQWLYVKGAQNFEEMTNLSKDFRNLLVQ 83

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +F+I  PEIV  +IS DGTRK+LLR     + G  E+E VYIPEK RGTLC+SSQ+GC+L
Sbjct: 84  NFAITRPEIVTRQISKDGTRKYLLR-----VTGGHEVEAVYIPEKDRGTLCISSQIGCTL 138

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TC+FC+TGTQKLVRNLT  EI+ Q+L+AR  L ++               R +SNIV+MG
Sbjct: 139 TCTFCHTGTQKLVRNLTPAEIVGQILIARDDLDEWGKDA--------GQKRNVSNIVLMG 190

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N DNV+ ++ IA D+ G++ S+RRITLSTSG VP I R G EIG MLAIS HA 
Sbjct: 191 MGEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGVVPEIIRTGSEIGCMLAISFHAT 250

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++++R++LVPINRK+ +  L++ACR+YP LSN+ RITFEYVMLK INDS  DA  L+ ++
Sbjct: 251 TDEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITFEYVMLKNINDSDEDARRLVDLI 310

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            GIPAKINLIPFNPWPG  Y  SD   I  F + + ++GY+SPIR PRG DI+AA GQLK
Sbjct: 311 SGIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKAGYASPIRRPRGEDIMAAXGQLK 370

Query: 367 SLSKRIPKVPRQEMQI 382
           S ++R+ K  +Q  + 
Sbjct: 371 SETQRVRKSAKQMAEE 386


>gi|205829717|sp|A4VNX4|RLMN_PSEU5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 382

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 169/374 (45%), Positives = 221/374 (59%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + +LE     IG      R R  Q+ KWI+  G+ DF  MS++ + +R  L 
Sbjct: 7   KVNLLGLTQPQLESFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PEIV E IS DGTRKW++R     +     +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEIRGPEIVSEDISSDGTRKWVVR-----VASGSCVETVYIPQGGRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D +G   SKR++TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            +  LR+ LVPIN+KYPL++L+ AC+ Y      +R+ T EY +LKG+ND P  A  +I 
Sbjct: 228 PNEALRDQLVPINKKYPLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIA 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  IP KINLIPFNP+P   Y       I  F + + + G++  +RT RG DI AACGQ
Sbjct: 288 LLADIPCKINLIPFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQ 347

Query: 365 LKSLS-KRIPKVPR 377
           L      R  +  R
Sbjct: 348 LVGQVLDRTRRSER 361


>gi|77460825|ref|YP_350332.1| hypothetical protein Pfl01_4604 [Pseudomonas fluorescens Pf0-1]
 gi|123772061|sp|Q3K7B3|RLMN_PSEPF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|77384828|gb|ABA76341.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 382

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 167/374 (44%), Positives = 227/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KNNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R     +     +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  AVAEVRGPEVVSEDISSDGTRKWVVR-----VASGSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATID----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVVAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++C+ Y      +R+ T EY +LK +ND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK IP KINLIPFNP+P   Y       I  F + + ++G++  +RT RG DI AACGQ
Sbjct: 288 LLKDIPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQ 347

Query: 365 LKSLS-KRIPKVPR 377
           L      R  +  R
Sbjct: 348 LVGQVLDRTRRSER 361


>gi|238912645|ref|ZP_04656482.1| hypothetical protein SentesTe_16142 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 388

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 160/384 (41%), Positives = 216/384 (56%), Gaps = 23/384 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +N   K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +
Sbjct: 16  LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSS
Sbjct: 72  RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSS 125

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPIT 175

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G  I V LA
Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGYMIDVALA 235

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298
           ISLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    
Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI
Sbjct: 296 AHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDI 355

Query: 359 LAACGQLKSLS-KRIPKVPRQEMQ 381
            AACGQL      R  +  R+ MQ
Sbjct: 356 DAACGQLAGDVIDRTKRTLRKRMQ 379


>gi|332639899|pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
           With S- Adenosylmethionine
 gi|332639900|pdb|3RFA|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
           With S- Adenosylmethionine
          Length = 404

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 158/382 (41%), Positives = 216/382 (56%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AA G
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAXG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|259907715|ref|YP_002648071.1| ribosomal RNA large subunit methyltransferase N [Erwinia pyrifoliae
           Ep1/96]
 gi|224963337|emb|CAX54822.1| conserved uncharacterized protein YfgB [Erwinia pyrifoliae Ep1/96]
 gi|283477569|emb|CAY73485.1| UPF0063 protein yfgB [Erwinia pyrifoliae DSM 12163]
 gi|310764777|gb|ADP09727.1| ribosomal RNA large subunit methyltransferase N [Erwinia sp.
           Ejp617]
          Length = 389

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 162/383 (42%), Positives = 220/383 (57%), Gaps = 23/383 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E    +G        R  Q+ KWIY     DF  M+DI++  R+ L
Sbjct: 21  EKINLLDLNRQQMREFFASLG----EKPFRADQVMKWIYHYCCDDFDEMTDINKVFRNRL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPEK R TLCVSSQVGC
Sbjct: 77  KELAEIRAPEVAEEQRSADGTIKWAIQV------GGQQVETVYIPEKDRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +RN +VPIN+KY +E  + +   Y G SNA   R+T EYVML  INDS  +A  L
Sbjct: 241 APNDSIRNEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHEL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 301 AALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 360

Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384
           GQL      R  +  +++M    
Sbjct: 361 GQLAGDVIDRTKRTLKKKMAGEA 383


>gi|225024692|ref|ZP_03713884.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
           23834]
 gi|224942581|gb|EEG23790.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
           23834]
          Length = 363

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 155/378 (41%), Positives = 225/378 (59%), Gaps = 20/378 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+      L     ++G        R  Q+ +W++     DF  M+D+++ +R  LN
Sbjct: 2   KTNLLNYDLAGLTAHFAQMG----EKPFRARQVMRWMHQGAAGDFDEMTDLAKSLRAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   +  P ++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  ESAQVGVPALMAAQESRDGTRKWLL-----DVGTGNGVETVFIPETDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNL+  EI+ Q+  A   LG  P  E           R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKALGATPKDE-----------RVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N+DNV  +LSI  D  G + S+RR+T+STSG VP + R+ E++ V LA+SLHA
Sbjct: 162 GMGEPLANYDNVVTALSIMLDDHGYALSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +RN +VP+N+KYPL+ L+ AC+ Y   +    +TFEYVML G+ND P  A  L+++
Sbjct: 222 PNDAIRNEIVPLNKKYPLKELMAACQRYLVKAPRDFVTFEYVMLDGVNDKPEHARELLEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S  ++I  F + + ++G    +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYNRSSDENIRVFRDILYQAGLVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQIT 383
               +   +  ++ +Q+ 
Sbjct: 342 AGQVQDKTRRQQKWLQLQ 359


>gi|119476380|ref|ZP_01616731.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
           HTCC2143]
 gi|119450244|gb|EAW31479.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
           HTCC2143]
          Length = 386

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 170/382 (44%), Positives = 231/382 (60%), Gaps = 22/382 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+G+ RE++E   + +G        R  Q+ KWI+ +G+ +F  M++IS+ +R  L
Sbjct: 16  EKTNLLGLSREKMEAFCVSLG----EKPFRAQQLLKWIHHQGVDNFDAMTNISKALRSRL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PEIV +  S DGTRKW +R     I G   +ETV IP+  RGTLCVSSQVGC
Sbjct: 72  IQCAEIRPPEIVSQNDSVDGTRKWAIR-----IAGGGLVETVLIPDGDRGTLCVSSQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q   R+L+A EI+ QV LA +    FP              R I+N+VM
Sbjct: 127 SLDCSFCSTGKQGFQRDLSAAEIIGQVWLAINSYDAFPSTNK----------RIITNVVM 176

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +S+S+  D  G   SKRR+TLSTSG VP + ++G+   V LAISLH
Sbjct: 177 MGMGEPLLNFDNVVQSMSLMMDDFGYGISKRRVTLSTSGVVPALDKLGDVSEVSLAISLH 236

Query: 245 AVSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRI-TFEYVMLKGINDSPRDALNL 302
           A +++LR+ LVPIN+KYP+  L+ AC R++   ++  R+ T EY ++ G+NDS   A  L
Sbjct: 237 APNDELRSQLVPINKKYPIAELLAACGRYWAKQTDTHRVTTVEYTLIAGVNDSREHAKEL 296

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+LK  P KINLIPFNP+   +Y    +K I  F + +  S   + +R  RG DI AAC
Sbjct: 297 AKLLKDFPCKINLIPFNPFSLSDYQRPSKKTIDQFWQVLSNSSIVTTVRNTRGDDIDAAC 356

Query: 363 GQL-KSLSKRIPKVPRQEMQIT 383
           GQL   ++ R  +  R     T
Sbjct: 357 GQLVGQVADRTKRSERHRTNYT 378


>gi|294789305|ref|ZP_06754543.1| radical SAM enzyme, Cfr family [Simonsiella muelleri ATCC 29453]
 gi|294482730|gb|EFG30419.1| radical SAM enzyme, Cfr family [Simonsiella muelleri ATCC 29453]
          Length = 363

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 161/377 (42%), Positives = 221/377 (58%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+      L E   ++G        R  Q+ +WI+  G  +F  M+D+++ +R  LN
Sbjct: 2   KTNLLNFDLPTLTEHFAQMG----EKPFRAKQVMRWIHQSGAENFDQMTDLAKSLRAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +  +  P ++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  DNAQVGIPALITSQESKDGTRKWLL-----DVGTGNGVETVFIPETERGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNL+  EI+ Q+  A   LG           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKALG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N+DNV  +LSI  D  G   S+RR+T+STSG VP + R+ E++ V LA+SLHA
Sbjct: 162 GMGEPLANYDNVINALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +R+ +VP+N+KYPL+ L+ AC  Y   +    ITFEYVML GIND P  A  L+++
Sbjct: 222 SNDQVRDKIVPLNKKYPLKELMAACNRYLMKAPRDFITFEYVMLDGINDKPEHAHELVQL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K  P K NLIPFNP+P   Y  S  K+I  F E +  +   + +R  RG DI AACGQL
Sbjct: 282 VKDTPCKFNLIPFNPFPNSGYERSSNKNINIFKEILMEADLVTTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   K   +  QI
Sbjct: 342 AGQVQDKTKRQEKWQQI 358


>gi|325205918|gb|ADZ01371.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M04-240196]
          Length = 364

 Score =  463 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 160/377 (42%), Positives = 230/377 (61%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +W++  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQAGIEIPKLMMSQKSSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|114562291|ref|YP_749804.1| hypothetical protein Sfri_1113 [Shewanella frigidimarina NCIMB 400]
 gi|122300423|sp|Q085U9|RLMN_SHEFN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|114333584|gb|ABI70966.1| radical SAM enzyme, Cfr family protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 373

 Score =  463 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 168/387 (43%), Positives = 226/387 (58%), Gaps = 25/387 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            +KK +L+ + R+ L     ++G        R  Q+ KW+Y  G+ DF+ M++I++ +R 
Sbjct: 2   SVKKINLLDLDRKGLRALFSEMG----EKPFRADQLMKWVYHFGVTDFEEMNNINKVLRT 57

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I+ PEI   + S DGT K+ +      +G   E+ETVYIPE+ R TLCVSSQV
Sbjct: 58  KLAAKCEIVAPEIASFQKSNDGTIKFAI-----NVGQGQEVETVYIPEEDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C+FC TG Q   RNLT  EI+ QV      LG      D          R ISN+
Sbjct: 113 GCALECTFCSTGQQGFNRNLTVSEIIGQVWRVSQFLGFHKDTGD----------RPISNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  NV  ++ I  D  G S SKRR+TLSTSG VP + ++G+ I V LA+S
Sbjct: 163 VMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDAL 300
           +HA +++LR++LVP+N+KYPL+  +   R Y   SN    R+T EYVML  INDS   A 
Sbjct: 223 IHAPNDELRDVLVPVNKKYPLQEFLAGIRRYLEKSNANRGRVTVEYVMLDHINDSTDQAH 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L  ++K  P KINLIPFNP+PG  Y  S    I  FS+ +   G +  +R  RG DI A
Sbjct: 283 ELAILMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEHGLTVIVRKTRGDDIDA 342

Query: 361 ACGQL----KSLSKRIPKVPRQEMQIT 383
           ACGQL    +  +KR+ K   Q+ QI+
Sbjct: 343 ACGQLAGDIRDRTKRLAKKQMQQNQIS 369


>gi|167031908|ref|YP_001667139.1| radical SAM protein [Pseudomonas putida GB-1]
 gi|205829825|sp|B0KPI4|RLMN_PSEPG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|166858396|gb|ABY96803.1| radical SAM enzyme, Cfr family [Pseudomonas putida GB-1]
          Length = 381

 Score =  463 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 167/374 (44%), Positives = 224/374 (59%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLE 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V E IS DGTRKW++R     +     +ETVYIP   RGTLCVSSQ GC+
Sbjct: 63  AVAEIRPPEVVSEDISADGTRKWVIR-----VASGSCVETVYIPTDDRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV LA    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL++L+++C  Y      +R+ T EY +LK +ND P  A  +I+
Sbjct: 228 PNDELRNKLVPINKKYPLKVLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ +P KINLIPFNP+P   Y       I  F + +   G++   RT RG DI AACGQ
Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   ++ R  +  R
Sbjct: 348 LVGQVNDRTRRSER 361


>gi|26987586|ref|NP_743011.1| radical SAM enzyme, Cfr family [Pseudomonas putida KT2440]
 gi|148546124|ref|YP_001266226.1| radical SAM protein [Pseudomonas putida F1]
 gi|81586431|sp|Q88PK0|RLMN_PSEPK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829824|sp|A5VYT2|RLMN_PSEP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|24982262|gb|AAN66475.1|AE016276_10 conserved hypothetical protein TIGR00048 [Pseudomonas putida
           KT2440]
 gi|148510182|gb|ABQ77042.1| radical SAM enzyme, Cfr family [Pseudomonas putida F1]
 gi|313497219|gb|ADR58585.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
           BIRD-1]
          Length = 381

 Score =  463 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 167/374 (44%), Positives = 224/374 (59%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLE 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V E IS DGTRKW++R     +     +ETVYIP   RGTLCVSSQ GC+
Sbjct: 63  AVAEIRPPEVVSEDISADGTRKWVIR-----VASGSCVETVYIPTDDRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV LA    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL++L+++C  Y      +R+ T EY +LK +ND P  A  +I+
Sbjct: 228 PNDELRNKLVPINKKYPLKVLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ +P KINLIPFNP+P   Y       I  F + +   G++   RT RG DI AACGQ
Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   ++ R  +  R
Sbjct: 348 LVGQVNDRTRRSER 361


>gi|332288518|ref|YP_004419370.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
           anatis UMN179]
 gi|330431414|gb|AEC16473.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
           anatis UMN179]
          Length = 372

 Score =  463 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 163/381 (42%), Positives = 219/381 (57%), Gaps = 23/381 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+ + R+E+   L  +G        R  QI KWIY  G  +F  M++I++ +R 
Sbjct: 2   TTEKTNLLNLTRQEMRHFLADLG----EKPFRADQIMKWIYHYGEDNFDNMTNINKVLRE 57

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L Q   I  PEI  E+ S DGT KW ++          +IE+VYIPE  R TLCVSSQV
Sbjct: 58  KLKQVAEIKAPEIAVEQRSFDGTIKWAMQVGD------QQIESVYIPEADRATLCVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C+FC T  Q   RNLT  EI+ QV  A  ++G F   +           R I+N+
Sbjct: 112 GCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKVIGAFGETKV----------RPITNV 161

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++GE I V LAIS
Sbjct: 162 VMMGMGEPLLNVSNVVPAMEIMLDDFGYGLSKRRVTLSTSGVVPALDKLGEMIDVALAIS 221

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDAL 300
           LHA +++LRN +VP+N+KY +EML+D+   Y  +SNA   ++T EYVML  +ND    A 
Sbjct: 222 LHAPNDELRNEIVPLNKKYNIEMLMDSVNRYLKISNANHGKVTIEYVMLDHVNDEVEHAH 281

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L K+LK  P KINLIP+NP+P   Y  S    I  F + +   G++  +R  RG DI A
Sbjct: 282 QLAKVLKNTPCKINLIPWNPFPEAPYNKSSNTRIDRFQKTLMEYGFTVIVRKTRGDDIDA 341

Query: 361 ACGQLKSLS-KRIPKVPRQEM 380
           ACGQL      R  +  ++  
Sbjct: 342 ACGQLAGDVIDRTKRTAQKRA 362


>gi|271501574|ref|YP_003334600.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
 gi|270345129|gb|ACZ77894.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
          Length = 392

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 158/380 (41%), Positives = 216/380 (56%), Gaps = 23/380 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+   R+++     ++G        R  Q+ KW+Y     DF  M+DI++ +R  L
Sbjct: 24  EKINLLDFNRQQMRAFFAQLG----EKPFRADQVMKWMYHYCCDDFNQMTDINKVLRGKL 79

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+VDE+ S DGT KW +      +     +ETVYIPE  R TLCVSSQVGC
Sbjct: 80  QAIAEIRAPEVVDEQRSSDGTIKWAI------LVDGQRVETVYIPEDDRATLCVSSQVGC 133

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 134 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 184 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++++RN ++PIN+KY +E  + A R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 244 APTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQL 303

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 304 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 363

Query: 363 GQLKSL-SKRIPKVPRQEMQ 381
           GQL      R  +  +++M+
Sbjct: 364 GQLAGEVVDRTKRTLKKKME 383


>gi|269140148|ref|YP_003296849.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202]
 gi|267985809|gb|ACY85638.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202]
 gi|304559982|gb|ADM42646.1| Ribosomal RNA large subunit methyltransferase N [Edwardsiella tarda
           FL6-60]
          Length = 411

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 160/379 (42%), Positives = 215/379 (56%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E  +++G        R  QI KWIY     DF  M+DI++ +R  L
Sbjct: 43  EKINLLDLDRKQMREFFIQMG----EKPFRADQIMKWIYHYCCDDFDVMTDINKVLRAKL 98

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW L+           +ETVYIPE  R TLCVSSQVGC
Sbjct: 99  KQVAEIRAPEVAVEQRSSDGTIKWALQVGD------QRVETVYIPEDDRATLCVSSQVGC 152

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 153 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AQKVTGNRPITNVVM 202

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 203 MGMGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 262

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VPINRKY ++M + + R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 263 APNDAIRDEIVPINRKYNIDMFLGSVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 322

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  +  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 323 AECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 382

Query: 363 GQLKSLS-KRIPKVPRQEM 380
           GQL      R  +  +++ 
Sbjct: 383 GQLAGEVIDRTKRTLKKQA 401


>gi|163793899|ref|ZP_02187873.1| radical SAM family enzyme [alpha proteobacterium BAL199]
 gi|159181010|gb|EDP65527.1| radical SAM family enzyme [alpha proteobacterium BAL199]
          Length = 389

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 202/373 (54%), Positives = 263/373 (70%), Gaps = 18/373 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ R+ L   L  IG+P      RT QIW W+Y RG  DFQ M+ +++ +R  L 
Sbjct: 30  RPDLLGLERDALAAVLDGIGLPA----FRTGQIWHWLYHRGATDFQTMTTLAKPLRARLA 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  P +V  + S DGT KWLLRF         E E V+IPE+ RGTLCVSSQVGC+
Sbjct: 86  ETFRISRPSVVTRQDSIDGTIKWLLRF-----ADGNEAEAVFIPEEDRGTLCVSSQVGCT 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ+LVRNLT+ EI+ QV++A   LG +P              R ++NIV+M
Sbjct: 141 LTCSFCHTGTQRLVRNLTSAEIVGQVMVALDHLGAYPTG---------GPNRPLTNIVLM 191

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D  G++ SKRRITLSTSG VP +A+ G ++GV LAISLHA
Sbjct: 192 GMGEPLYNFDNVASAMRIIMDGEGVALSKRRITLSTSGVVPMMAQCGADLGVNLAISLHA 251

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +R+ LVPINRK+P+  L+DACR YPGL+NARRITFEYVML G+ND+P DA  L+ +
Sbjct: 252 TTDTVRDDLVPINRKWPIAELLDACRRYPGLNNARRITFEYVMLAGVNDAPADARRLVAL 311

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIPAKINLIPFNPWPG +Y+CSD   I  F++ +  +GY+SP+RTPRG DILAACGQL
Sbjct: 312 IEGIPAKINLIPFNPWPGSKYVCSDPDTIERFAQIVLAAGYASPVRTPRGRDILAACGQL 371

Query: 366 KSLSKRIPKVPRQ 378
           KS S ++ +   +
Sbjct: 372 KSESAKLTRREAR 384


>gi|94495790|ref|ZP_01302369.1| hypothetical protein SKA58_14447 [Sphingomonas sp. SKA58]
 gi|94424482|gb|EAT09504.1| hypothetical protein SKA58_14447 [Sphingomonas sp. SKA58]
          Length = 420

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 192/389 (49%), Positives = 265/389 (68%), Gaps = 16/389 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ R +++    + G+  +  ++R+ QI+ W+Y RG  DF  M+D+++ +R  + 
Sbjct: 31  RVDLMGLSRAQIKSVFEEAGLDAKAAKLRSKQIFHWLYHRGETDFDAMTDLAKPMRGWMA 90

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F +  P++V+ ++S DGTRKWLLR          + E V+IP+  RGTLCVSSQVGC+
Sbjct: 91  ERFVVGRPQVVEAQVSSDGTRKWLLR-----SDDGQDYEMVFIPDADRGTLCVSSQVGCT 145

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP---------GCEDIEGMVIPSVG 176
           L CSFC+TGT +LVRNLT  EI+ QV+LAR  LG++P           E  E     S G
Sbjct: 146 LNCSFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGSMASANDDDEGDEASHYTSDG 205

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           R ++NIVMMGMGEPL NFD+V+ +L +  D  GL+ SKRRITLSTSG +P +AR GEEIG
Sbjct: 206 RMLTNIVMMGMGEPLYNFDHVRDALKVVMDGDGLALSKRRITLSTSGVIPMMARAGEEIG 265

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V LA+SLH V+ D+R+ LVP+NRK+ +E L+ AC  YPG +NARRITFEYVM+K  NDS 
Sbjct: 266 VNLAVSLHGVTKDVRDELVPLNRKFGIEELLAACAAYPGANNARRITFEYVMIKDKNDSD 325

Query: 297 RDALNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            DA  L+++L+   +PAK+NLIPFNPWPG +Y CS  + I  FS+ +   G S+P+RTPR
Sbjct: 326 ADARELVRLLRHYKLPAKVNLIPFNPWPGTDYECSTPERIRRFSDIVFEGGISAPVRTPR 385

Query: 355 GLDILAACGQLKSLSKRIPKVPRQEMQIT 383
           G DI+AACGQLKS S++  K   + +   
Sbjct: 386 GRDIMAACGQLKSASEKKSKAEMRRLAEE 414


>gi|85374384|ref|YP_458446.1| Fe-S-cluster redox protein [Erythrobacter litoralis HTCC2594]
 gi|123409605|sp|Q2N9J2|RLMN_ERYLH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|84787467|gb|ABC63649.1| predicted Fe-S-cluster redox enzyme [Erythrobacter litoralis
           HTCC2594]
          Length = 418

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 188/374 (50%), Positives = 257/374 (68%), Gaps = 13/374 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ +  ++E   + G+  +  ++R+ Q++ W+Y RG+ DF+ M+DI++ +R  L 
Sbjct: 29  RVDLMGLPKARIQELFAEAGLDAKQAKLRSKQVYHWLYHRGVTDFEAMTDIAKTMRPWLA 88

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F +  P +V+ + S DGTRKWLL+          + E V+IP+  RGTLCVSSQVGC+
Sbjct: 89  ERFIVGRPNVVEAQHSTDGTRKWLLQT-----DDGHDFEMVFIPDADRGTLCVSSQVGCT 143

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC------EDIEGMVIPSVGRKI 179
           L C FC+TGT +LVRNLT  EI+ QV+LAR  LG++P        +  +     + GR +
Sbjct: 144 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGRMDGLDDVEDTGHYSADGRLL 203

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +NIVMMGMGEPL NFDNV+ +L +  D  GL+ SKRRITLSTSG VP + R GEEIGV L
Sbjct: 204 TNIVMMGMGEPLYNFDNVRDALKLVMDGEGLALSKRRITLSTSGVVPMMERCGEEIGVNL 263

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHAV+ D+R+ +VPIN+KY +E L+ AC  YPG SNARRITFEYVMLK  ND+   A
Sbjct: 264 AVSLHAVTKDIRDEIVPINKKYGIEELLQACADYPGASNARRITFEYVMLKDKNDTDEHA 323

Query: 300 LNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
             L+++LK   +PAK+NLIPFNPWPG  Y CS  + I  FS  +   G S+P+RTPRG D
Sbjct: 324 RELVRLLKQYNLPAKVNLIPFNPWPGAAYECSTPERIRAFSNIVFEGGISAPVRTPRGRD 383

Query: 358 ILAACGQLKSLSKR 371
           I AACGQLK+ +++
Sbjct: 384 IDAACGQLKTAAQK 397


>gi|241758847|ref|ZP_04756960.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114]
 gi|261380196|ref|ZP_05984769.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703]
 gi|241321055|gb|EER57268.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114]
 gi|284797045|gb|EFC52392.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703]
          Length = 362

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 158/377 (41%), Positives = 232/377 (61%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+      L +   ++G        R  Q+ +W++  G ++F+ M+D+++ +R  LN
Sbjct: 2   KTNLLNYDLNGLTQHFAEMG----EKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  +I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQATIEVPKLMMAQESTDGTRKWLL-----DVGTGNGVETVFIPEAERGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI++
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|298368581|ref|ZP_06979899.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282584|gb|EFI24071.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 364

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 156/377 (41%), Positives = 230/377 (61%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+      L     ++G        R  Q+ +W++  G ++F  M+D+++ +R  L 
Sbjct: 2   KTNLLNYDLNSLTRHFAEMG----EKPFRAKQVMRWMHQAGAQNFDEMTDLAKSLRQKLI 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  +I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EGATIEVPKLMAAQESSDGTRKWLL-----DVGTGNGVETVFIPETDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D+ G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDNHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML G+ND+ + A  LI +
Sbjct: 222 SNDEVRDKIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDNAQHARELIDL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++ +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VRDVPCKFNLIPFNPFPHSGYERSSAENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               K   +  ++  QI
Sbjct: 342 AGQVKDKTRRQQKWQQI 358


>gi|70732281|ref|YP_262037.1| radical SAM protein [Pseudomonas fluorescens Pf-5]
 gi|123748356|sp|Q4K6U6|RLMN_PSEF5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|68346580|gb|AAY94186.1| radical SAM enzyme, Cfr family [Pseudomonas fluorescens Pf-5]
          Length = 382

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 166/377 (44%), Positives = 226/377 (59%), Gaps = 21/377 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            + K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R 
Sbjct: 4   SIGKTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALRE 59

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  PE+V E IS DGTRKW++R     +     +ETVYIP+  RGTLCVSSQ 
Sbjct: 60  KLKAVAEIRGPEVVSEDISSDGTRKWVVR-----VASGSCVETVYIPQGKRGTLCVSSQA 114

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+
Sbjct: 115 GCALDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNV 164

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+S
Sbjct: 165 VMMGMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALS 224

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALN 301
           LHA ++ LRN LVPIN+KYPL+ML+++C+ Y      +R+ T EY +LK +ND    A+ 
Sbjct: 225 LHAPNDALRNQLVPINKKYPLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVE 284

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +I++LK +P KINLIPFNP+P   Y       I  F + +  +G++  +RT RG DI AA
Sbjct: 285 MIELLKDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAA 344

Query: 362 CGQLKSLS-KRIPKVPR 377
           CGQL      R  +  R
Sbjct: 345 CGQLVGQVLDRTRRSER 361


>gi|307295042|ref|ZP_07574884.1| radical SAM enzyme, Cfr family [Sphingobium chlorophenolicum L-1]
 gi|306879516|gb|EFN10734.1| radical SAM enzyme, Cfr family [Sphingobium chlorophenolicum L-1]
          Length = 419

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 192/388 (49%), Positives = 265/388 (68%), Gaps = 15/388 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ R +++ AL + G+  +  ++R+ Q++ W+Y RG  DF  M+D+++ +R  + 
Sbjct: 31  RVDLMGLSRPQIKSALEEAGLDVKQAKLRSKQLFHWLYHRGETDFDAMTDLAKPMRGWMA 90

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F +  PE+V+ ++S DGTRKWLLR          + E V+IP+  RGTLCVSSQVGC+
Sbjct: 91  ERFVVGRPEVVEAQVSSDGTRKWLLR-----SDDGQDYEMVFIPDADRGTLCVSSQVGCT 145

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--------GCEDIEGMVIPSVGR 177
           L C FC+TGT +LVRNLT  EI+ QV+LAR  LG++P          E  +       GR
Sbjct: 146 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGSMASVNDDEADDASQYSPDGR 205

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            ++NIVMMGMGEPL NFD+V+ +L +  D  GL+ SKRRITLSTSG VP +AR GEEIGV
Sbjct: 206 MLTNIVMMGMGEPLYNFDHVRDALKVVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGV 265

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHAV+ D+R+ LVP+NRKY +E L+ AC  YPG +NARRITFEYVM++  NDS  
Sbjct: 266 NLAVSLHAVTKDVRDELVPLNRKYGIEDLLQACADYPGANNARRITFEYVMIRDKNDSDD 325

Query: 298 DALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           DA  L+++L+   +PAK+NLIPFNPWPG +Y CS  + I  FS+ +   G S+P+RTPRG
Sbjct: 326 DARELVRLLRQYKLPAKVNLIPFNPWPGTDYECSTPERIRRFSDIVFEGGISAPVRTPRG 385

Query: 356 LDILAACGQLKSLSKRIPKVPRQEMQIT 383
            DI+AACGQLKS S++  +     +   
Sbjct: 386 RDIMAACGQLKSASEKKSRAELDRLAAE 413


>gi|121635020|ref|YP_975265.1| hypothetical protein NMC1245 [Neisseria meningitidis FAM18]
 gi|254805109|ref|YP_003083330.1| hypothetical protein NMO_1149 [Neisseria meningitidis alpha14]
 gi|205829823|sp|A1KUD6|RLMN_NEIMF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120866726|emb|CAM10479.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
 gi|254668651|emb|CBA06309.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
 gi|325132491|gb|EGC55184.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M6190]
 gi|325138265|gb|EGC60834.1| radical SAM enzyme, Cfr family [Neisseria meningitidis ES14902]
 gi|325142519|gb|EGC64920.1| radical SAM enzyme, Cfr family [Neisseria meningitidis 961-5945]
 gi|325198460|gb|ADY93916.1| radical SAM enzyme, Cfr family [Neisseria meningitidis G2136]
          Length = 364

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 160/377 (42%), Positives = 230/377 (61%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +W++  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQAGIEIPKLMMSQKSSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|74316609|ref|YP_314349.1| hypothetical protein Tbd_0591 [Thiobacillus denitrificans ATCC
           25259]
 gi|123773051|sp|Q3SL73|RLMN_THIDA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|74056104|gb|AAZ96544.1| Conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 372

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 159/378 (42%), Positives = 212/378 (56%), Gaps = 13/378 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+      L     + G        R  Q++ WI+  G+ DF  M+DI++ +R  L  
Sbjct: 3   QNLLDFDLAGLTAWFGERG----EKPFRARQVFHWIHQAGVTDFAQMTDIAKSLREKLQN 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +  P I    +S DGTRKWL       +G    IETV+IPE  RGTLCVSSQVGC+L
Sbjct: 59  EAVVQAPAINFAHLSADGTRKWLF-----DVGVGNGIETVFIPEDDRGTLCVSSQVGCAL 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG Q   RNLT  EI+ Q+ +A+  L   P     +        R ++N+VMMG
Sbjct: 114 ECTFCSTGRQGFNRNLTVAEIVGQLWVAQHSLKREPNRTASDHGAGEIAERPVTNVVMMG 173

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV  +L +  D      S+RR+T+STSG VP + R+ E   V LA+SLHA 
Sbjct: 174 MGEPLANFENVVTALGVMLDDHAYGLSRRRVTVSTSGLVPAMDRLAERCPVALAVSLHAP 233

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ +VPINRKYPL  L+ ACR Y   +    ITFEYVML G+ND P  A  LI + 
Sbjct: 234 NDALRDQIVPINRKYPLAELMAACRRYLVHAPRDFITFEYVMLAGVNDQPEHARQLIALT 293

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+P   Y     + +  F E ++ +GY    R  RG DI AACGQL 
Sbjct: 294 RDVPCKFNLIPFNPFPDSGYEKPRAEAMRVFREILQDAGYVVTTRKTRGDDIDAACGQLA 353

Query: 367 S----LSKRIPKVPRQEM 380
                 S R+ K   +E 
Sbjct: 354 GRVADRSGRVMKRVHREA 371


>gi|87118480|ref|ZP_01074379.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
 gi|86166114|gb|EAQ67380.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
          Length = 378

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 168/383 (43%), Positives = 230/383 (60%), Gaps = 18/383 (4%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  +KK +L+G+  +++ E    IG      + R +Q+ KWI+ +G  DF  M+D+S+ +
Sbjct: 8   MTDVKKVNLLGLPPKKMIEFFESIG----EKKFRATQVLKWIHQKGADDFDQMTDVSKAL 63

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           RH L     I  PE+V + IS DGTRKW++R      GG   +ETV IP+  R TLCVSS
Sbjct: 64  RHKLKDISEIRAPEVVSQNISNDGTRKWIIRTEG---GGNNCVETVLIPDGDRATLCVSS 120

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL CSFC TG Q   RNLT  E++ QV +A    G F           P+  R+++
Sbjct: 121 QVGCSLDCSFCSTGKQGFNRNLTPSEVIGQVWVAIKSFGPFD----------PNGPRRVT 170

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL NF+ V  ++++  D      SKRR+TLSTSG VP I  + E   V LA
Sbjct: 171 NVVMMGMGEPLMNFEPVVDAMTLMMDDNAYGMSKRRVTLSTSGVVPKIYELAERTDVSLA 230

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDA 299
           ISLHA +N+LR++LVPIN+KYP+  L+ AC+HY   L + R IT EY M+ G+NDS   A
Sbjct: 231 ISLHAPTNELRDVLVPINKKYPINELLGACQHYLTSLPDKRHITIEYTMMAGVNDSEEQA 290

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L K+LK +  KINLIPFNP+P   Y       +  F + +   GY+  +RT RG DI 
Sbjct: 291 RALSKLLKTLECKINLIPFNPFPNSGYDKPSNNQVRRFQKVLADDGYTVTVRTTRGDDID 350

Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382
           AACGQL        +  ++ +++
Sbjct: 351 AACGQLVGDFHDKTRRSQKYIEL 373


>gi|330807644|ref|YP_004352106.1| hypothetical protein PSEBR_a933 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375752|gb|AEA67102.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 382

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 166/374 (44%), Positives = 225/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V + IS DGTRKW++R     +     +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  AVAEIRGPEVVSQDISSDGTRKWVVR-----VASGSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVVSAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++C+ Y      +R+ T EY +LK +ND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK IP KINLIPFNP+P   Y       I  F + +  +G++  +RT RG DI AACGQ
Sbjct: 288 LLKNIPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQ 347

Query: 365 LKSLS-KRIPKVPR 377
           L      R  +  R
Sbjct: 348 LVGQVLDRTRRSER 361


>gi|297530651|ref|YP_003671926.1| radical SAM enzyme, Cfr family [Geobacillus sp. C56-T3]
 gi|297253903|gb|ADI27349.1| radical SAM enzyme, Cfr family [Geobacillus sp. C56-T3]
          Length = 365

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 200/366 (54%), Gaps = 25/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+  +  +EL+E L+  G        R +QI++W+Y   + DF  M+++ + +R  L  
Sbjct: 20  PSIYSLTLDELKEWLVAQG----EKPFRATQIYEWLYQNRVTDFADMTNLPKRLREQLAS 75

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            FSI   + V ++ S DGT K+L             IETV +      ++CV++QVGC +
Sbjct: 76  SFSITTLKTVVKQTSKDGTIKFLFELHD-----GYSIETVLMRHHYGNSVCVTTQVGCRI 130

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L R+L A EI+ QV+  +  L D                 ++S+IV+MG
Sbjct: 131 GCTFCASTLGGLKRHLEAGEIVAQVVQVQKALDD--------------TNERVSSIVVMG 176

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEP  N+D + K L I +   GL+   R IT+STSG +P I +  +E + +  AISLHA
Sbjct: 177 IGEPFDNYDALIKFLRIVNHPKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+LR  L+PIN+ YPL  L++A R+Y   +   R+TFEY +  G+ND    A  L ++
Sbjct: 237 PTNELRTKLMPINKAYPLPKLMEAVRYYIEKTGR-RVTFEYGLFGGVNDQLEHAEQLAEL 295

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KG+   +NLIP N  P   Y+ + +  I  F   +K+ G +  IR   G DI AACGQL
Sbjct: 296 IKGLKCHVNLIPVNYVPERNYVRTPRSQIFAFERALKKHGINVTIRREHGHDIDAACGQL 355

Query: 366 KSLSKR 371
           ++  ++
Sbjct: 356 RAKERK 361


>gi|144899244|emb|CAM76108.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 380

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 203/382 (53%), Positives = 259/382 (67%), Gaps = 19/382 (4%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +LIG+ R++L   +  IG        R  Q+W W+Y RG  DF  M+ IS+ ++  L
Sbjct: 6   QKTNLIGLSRDQLTAEMASIG----EKPFRAKQLWHWLYNRGETDFLKMTSISKVMQERL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQV 122
            + + +  P +  E  S D TRKWLL+F         E ETVYIP++   RG +C+SSQV
Sbjct: 62  AERYVVRRPLVERELTSVDTTRKWLLKF-----DDGNEAETVYIPDEDEQRGAVCISSQV 116

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+LTC FC+TGTQ LVRNLTA EI+ Q +LAR   G++P  +D          R +SNI
Sbjct: 117 GCTLTCKFCHTGTQLLVRNLTAAEIVGQFMLARDSYGEWPTPDD--------TTRLLSNI 168

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL NFDNV  +L I  D  G+  S+RRITLSTSG VP + R G E+GV LAIS
Sbjct: 169 VMMGMGEPLYNFDNVATALKIIMDGEGIGISRRRITLSTSGVVPMMGRAGAELGVNLAIS 228

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHAV++++RN ++PIN+KYPL+ L+ ACR YPG SNARRITFEYVMLKGINDS  DA  L
Sbjct: 229 LHAVTDEVRNQIMPINKKYPLKELMQACRDYPGASNARRITFEYVMLKGINDSLADAREL 288

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           ++++KG+PAK NLIPFNPWPG +Y CS  +DI  FS+ I+ +GYS+PIR  RG DILAAC
Sbjct: 289 LRLVKGLPAKFNLIPFNPWPGSDYECSSMRDIRAFSDLIQDNGYSAPIRKSRGADILAAC 348

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL+S S+R       E    G
Sbjct: 349 GQLRSESQRQKCSRLNERVAAG 370


>gi|322831763|ref|YP_004211790.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602]
 gi|321166964|gb|ADW72663.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602]
          Length = 399

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 157/378 (41%), Positives = 216/378 (57%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E  + +G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRKQMREFFINMG----EKPFRADQVMKWMYHYCSDDFEQMTDINKALREKLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+  E+ S DGT KW ++       G   +ETVYIP+  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVASEQRSTDGTIKWAIQV------GGQLVETVYIPDGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 141 LECTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVAGTRPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++ +R+ +VPINRKY ++  + A   Y   SNA   R+T EYVML  IND    A  L 
Sbjct: 251 PNDAIRDEIVPINRKYNIDTFLAAVERYISKSNANQGRVTIEYVMLDHINDGTEHAHELA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G++  +R  RG DI AACG
Sbjct: 311 ERLKNTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTVIVRKTRGDDIDAACG 370

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 371 QLAGDVIDRTKRTLKKKM 388


>gi|161870181|ref|YP_001599351.1| hypothetical protein NMCC_1221 [Neisseria meningitidis 053442]
 gi|205829821|sp|A9LZN6|RLMN_NEIM0 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|161595734|gb|ABX73394.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 364

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 161/377 (42%), Positives = 230/377 (61%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L       G        R  Q+ +W++  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLTRHFADTG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  SI  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQASIEIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDRAQHARELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|242240158|ref|YP_002988339.1| ribosomal RNA large subunit methyltransferase N [Dickeya dadantii
           Ech703]
 gi|242132215|gb|ACS86517.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech703]
          Length = 393

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 158/380 (41%), Positives = 214/380 (56%), Gaps = 23/380 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++      +G        R  Q+ KWIY     DF  M+DI++ +R  L 
Sbjct: 25  KINLLDLNRQQMRAFFAALG----EKPFRADQVMKWIYHYCCDDFNQMTDINKALRTRLQ 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  P++VDE+ S DGT KW +      +     +ETVYIPE  R TLCVSSQVGC+
Sbjct: 81  AIAEIRAPDVVDEQRSSDGTIKWAI------LVDGQRVETVYIPEDDRATLCVSSQVGCA 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVMM 184

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 185 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 244

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++RN ++PIN+KY +E  + A R Y   SNA   R+T EYVML  IND    A  L 
Sbjct: 245 PTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQLA 304

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 305 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 364

Query: 364 QLKSL-SKRIPKVPRQEMQI 382
           QL      R  +  +++M  
Sbjct: 365 QLAGEVVDRTKRTLKKKMAE 384


>gi|50122145|ref|YP_051312.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
           atrosepticum SCRI1043]
 gi|81644326|sp|Q6D273|RLMN_ERWCT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|49612671|emb|CAG76121.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 398

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 162/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ +  + +G        R  Q+ KW+Y     DF  M+DI++  R  L 
Sbjct: 31  KINLLDLNRQQMRDLFMSMG----EKPFRADQVMKWMYHYCCDDFNQMTDINKVFRTKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+VDE+ S DGT KW +      + G   +ETVYIPE+ R TLCVSSQVGC+
Sbjct: 87  EIAEIRAPEVVDEQRSSDGTIKWAI------LVGGQRVETVYIPEEERATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G F            +  R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++D+RN ++PIN+KY +EM + A R Y   SNA   R+T EYVML  IND    A  L 
Sbjct: 251 PTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QLKSL-SKRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 371 QLAGEVVDRTKRTLKKKM 388


>gi|238753878|ref|ZP_04615238.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri
           ATCC 29473]
 gi|238707866|gb|EEQ00224.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri
           ATCC 29473]
          Length = 398

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 159/379 (41%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L
Sbjct: 30  NKINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKL 85

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ +E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC
Sbjct: 86  QRVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGC 139

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I+N+VM
Sbjct: 140 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVM 189

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPINRKY +E  + A R Y   SN    R+T EYVML  INDS   A  L
Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 309

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369

Query: 363 GQLKSLS-KRIPKVPRQEM 380
           GQL      R  +  +++M
Sbjct: 370 GQLAGEVIDRTKRTLKKKM 388


>gi|229592444|ref|YP_002874563.1| hypothetical protein PFLU5060 [Pseudomonas fluorescens SBW25]
 gi|259491993|sp|C3K1L7|RLMN_PSEFS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|229364310|emb|CAY52051.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 382

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 169/374 (45%), Positives = 227/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALRDKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R     +     +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  AIAEVRGPEVVSEDISSDGTRKWVVR-----VASGSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++C+ Y      +R+ T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMATLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKNTPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 348 LVGQVMDRTRRSER 361


>gi|152995382|ref|YP_001340217.1| radical SAM protein [Marinomonas sp. MWYL1]
 gi|205829788|sp|A6VV03|RLMN_MARMS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|150836306|gb|ABR70282.1| radical SAM enzyme, Cfr family [Marinomonas sp. MWYL1]
          Length = 371

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 162/383 (42%), Positives = 224/383 (58%), Gaps = 18/383 (4%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  +KK +L+G+  E+L E    IG      + R +Q+ KWI+ +G   F+ M+D+S+ +
Sbjct: 1   MTDIKKVNLLGLSPEKLIEFFESIG----EKKFRATQVIKWIHQKGAESFEEMTDVSKAL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L Q   I  PE+V + IS DGTRKW++R      G    +ETV IP+  R TLCVSS
Sbjct: 57  RAKLEQICEIRGPEVVSQNISTDGTRKWIIRTEG---GKNDCVETVLIPDGDRATLCVSS 113

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL CSFC TG Q   RNLT  EI+ QV +A    G             P+  R+++
Sbjct: 114 QVGCSLDCSFCSTGKQGFNRNLTPAEIIGQVWIAIKSFGPMD----------PNGPRRVT 163

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL NF+ V  ++ +         SKRR+TLSTSG VP I  + +   V LA
Sbjct: 164 NVVMMGMGEPLMNFEPVVDAMILMMHDHAYGLSKRRVTLSTSGVVPKIYELVKRTDVSLA 223

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDA 299
           ISLHA ++ LRN LVPIN+KYP+  L++AC+ Y   L + R IT EY ++ G+ND+   A
Sbjct: 224 ISLHAPNDALRNELVPINKKYPIAELLEACQFYLENLPDKRHITIEYTLMSGVNDNEEQA 283

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++LK +  KINLIPFNP+P   Y          F + +  +GY+  +RT RG DI 
Sbjct: 284 HELAELLKVLECKINLIPFNPFPHSGYEKPSNNRTRRFQKILADAGYTVTVRTTRGDDID 343

Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382
           AACGQL        +  ++ +++
Sbjct: 344 AACGQLVGDFHDKTRRSQKYIEL 366


>gi|56419709|ref|YP_147027.1| ribosomal RNA large subunit methyltransferase N [Geobacillus
           kaustophilus HTA426]
 gi|81347651|sp|Q5L0S1|RLMN_GEOKA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|56379551|dbj|BAD75459.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 365

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 200/366 (54%), Gaps = 25/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+  +  +EL+E L+  G        R +QI++W+Y   + DF  M+++ + +R  L  
Sbjct: 20  PSIYSLTLDELKEWLVAQG----EKPFRATQIYEWLYQNRVTDFADMTNLPKRLREQLAS 75

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            FSI   + V ++ S DGT K+L             IETV +      ++CV++QVGC +
Sbjct: 76  SFSITTLKTVVKQTSKDGTIKFLFELHD-----GYSIETVLMRHNYGNSVCVTTQVGCRI 130

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L R+L A EI+ QV+  +  L D                 ++S+IV+MG
Sbjct: 131 GCTFCASTLGGLKRHLEAGEIVAQVVQVQKALDD--------------TNERVSSIVVMG 176

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEP  N+D + K L I +   GL+   R IT+STSG +P I +  +E + +  AISLHA
Sbjct: 177 IGEPFDNYDALIKFLRIVNHPKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+LR  L+PIN+ YPL  L++A R+Y   +   R+TFEY +  G+ND    A  L ++
Sbjct: 237 PTNELRTKLMPINKAYPLPKLMEAVRYYIEKTGR-RVTFEYGLFGGVNDQLEHAEQLAEL 295

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KG+   +NLIP N  P   Y+ + +  I  F   +K+ G +  IR   G DI AACGQL
Sbjct: 296 IKGLKCHVNLIPVNYVPERNYVRTPRSQIFAFERALKKHGINVTIRREHGHDIDAACGQL 355

Query: 366 KSLSKR 371
           ++  ++
Sbjct: 356 RAKERK 361


>gi|238788173|ref|ZP_04631968.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           frederiksenii ATCC 33641]
 gi|238723760|gb|EEQ15405.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           frederiksenii ATCC 33641]
          Length = 398

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 159/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSIDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +E  + A R Y   SN    R+T EYVML  INDS   A  L 
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKM 388


>gi|186896255|ref|YP_001873367.1| ribosomal RNA large subunit methyltransferase N [Yersinia
           pseudotuberculosis PB1/+]
 gi|205829930|sp|B2K9Q3|RLMN_YERPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|186699281|gb|ACC89910.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis PB1/+]
          Length = 398

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 160/378 (42%), Positives = 221/378 (58%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSVDGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +EM + A R Y   S  N  R+T EYVML  INDS   A  L 
Sbjct: 251 PTDDIRDEIVPINRKYNIEMFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKM 388


>gi|58038729|ref|YP_190693.1| putative Fe-S-cluster redox protein [Gluconobacter oxydans 621H]
 gi|81352583|sp|Q5FUA9|RLMN_GLUOX RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|58001143|gb|AAW60037.1| Putative Fe-S-cluster redox enzyme [Gluconobacter oxydans 621H]
          Length = 407

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 183/373 (49%), Positives = 255/373 (68%), Gaps = 18/373 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ REEL   + +IG        R  Q+W WIY +G  DF  M+ I++ ++  L 
Sbjct: 47  RRDLVGLSREELAALMTEIG----EKPFRAKQLWHWIYHQGATDFSAMTTIAKPMQAKLA 102

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123
           +HF +  P    E+ S D TRK+L RF         E ETVYIP++   RG +C+SSQVG
Sbjct: 103 EHFVVSRPTTATEQTSVDETRKFLFRFRD-----GQEAETVYIPDRREDRGAVCISSQVG 157

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C+FC+TGTQKLVRNL   EI+ Q + AR   G++P            + R +S IV
Sbjct: 158 CTLSCTFCHTGTQKLVRNLGPAEIVGQFMAARDSYGEWPSPSA-------DMPRYLSTIV 210

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++NV K++ I  D  G++ S+RRITLSTSG VP + R G+E+G+ LAISL
Sbjct: 211 LMGMGEPLYNYENVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDELGINLAISL 270

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV+N+LR+ +VP+NRKYP+E LI ACR YP  SN+RRITFEY+ML+G+NDS  DA  L+
Sbjct: 271 HAVTNELRDQIVPLNRKYPIEELIAACRRYPAASNSRRITFEYIMLRGVNDSEADARELV 330

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++++ +PAK+NLIPFNPWPG ++  S ++ +  F+  +  +G++SPIRTPRG DILAACG
Sbjct: 331 RLIRDLPAKVNLIPFNPWPGSDFQPSTRQQLTKFANIVMDAGFASPIRTPRGQDILAACG 390

Query: 364 QLKSLSKRIPKVP 376
           QLK+ S+R  +  
Sbjct: 391 QLKTESERQRRSA 403


>gi|319638408|ref|ZP_07993170.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa
           C102]
 gi|317400157|gb|EFV80816.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa
           C102]
          Length = 362

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 158/377 (41%), Positives = 232/377 (61%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+      L +   ++G        R  Q+ +W++  G ++F+ M+D+++ +R  LN
Sbjct: 2   KTNLLNYDLNGLTQHFAEMG----EKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  +I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQATIEVPKLMMAQESTDGTRKWLL-----DVGTGNGVETVFIPEAERGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI++
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSTNENIRIFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|22125249|ref|NP_668672.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
           KIM 10]
 gi|45442520|ref|NP_994059.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51597160|ref|YP_071351.1| ribosomal RNA large subunit methyltransferase N [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808316|ref|YP_652232.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
           Antiqua]
 gi|108811419|ref|YP_647186.1| hypothetical protein YPN_1256 [Yersinia pestis Nepal516]
 gi|145599499|ref|YP_001163575.1| hypothetical protein YPDSF_2227 [Yersinia pestis Pestoides F]
 gi|149365342|ref|ZP_01887377.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125]
 gi|162419386|ref|YP_001605027.1| hypothetical protein YpAngola_A0421 [Yersinia pestis Angola]
 gi|165926002|ref|ZP_02221834.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937119|ref|ZP_02225684.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008394|ref|ZP_02229292.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212301|ref|ZP_02238336.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399541|ref|ZP_02305065.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421243|ref|ZP_02312996.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423347|ref|ZP_02315100.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|218929942|ref|YP_002347817.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
           CO92]
 gi|229838462|ref|ZP_04458621.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895163|ref|ZP_04510339.1| predicted enzyme [Yersinia pestis Pestoides A]
 gi|229899029|ref|ZP_04514173.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
 gi|229901676|ref|ZP_04516798.1| predicted enzyme [Yersinia pestis Nepal516]
 gi|270489871|ref|ZP_06206945.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27]
 gi|294504556|ref|YP_003568618.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003]
 gi|81638860|sp|Q667Z6|RLMN_YERPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123372276|sp|Q1C5I5|RLMN_YERPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123373337|sp|Q1CK94|RLMN_YERPN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123776892|sp|Q7CJM9|RLMN_YERPE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829931|sp|A9R805|RLMN_YERPG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829932|sp|A4TMU0|RLMN_YERPP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|21958119|gb|AAM84923.1|AE013737_5 hypothetical protein y1350 [Yersinia pestis KIM 10]
 gi|45437385|gb|AAS62936.1| Predicted Fe-S-cluster redox enzyme [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51590442|emb|CAH22082.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108775067|gb|ABG17586.1| hypothetical protein YPN_1256 [Yersinia pestis Nepal516]
 gi|108780229|gb|ABG14287.1| hypothetical protein YPA_2322 [Yersinia pestis Antiqua]
 gi|115348553|emb|CAL21493.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145211195|gb|ABP40602.1| hypothetical protein YPDSF_2227 [Yersinia pestis Pestoides F]
 gi|149291755|gb|EDM41829.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125]
 gi|162352201|gb|ABX86149.1| radical SAM domain protein, Cfr family [Yersinia pestis Angola]
 gi|165914982|gb|EDR33594.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922206|gb|EDR39383.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992776|gb|EDR45077.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206232|gb|EDR50712.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960732|gb|EDR56753.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052045|gb|EDR63453.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057517|gb|EDR67263.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681605|gb|EEO77699.1| predicted enzyme [Yersinia pestis Nepal516]
 gi|229687974|gb|EEO80046.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694828|gb|EEO84875.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701925|gb|EEO89948.1| predicted enzyme [Yersinia pestis Pestoides A]
 gi|262362449|gb|ACY59170.1| hypothetical protein YPD4_2263 [Yersinia pestis D106004]
 gi|262366544|gb|ACY63101.1| hypothetical protein YPD8_2426 [Yersinia pestis D182038]
 gi|270338375|gb|EFA49152.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27]
 gi|294355015|gb|ADE65356.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003]
 gi|320016019|gb|ADV99590.1| putative enzyme [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 398

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 159/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSVDGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +E  + A R Y   S  N  R+T EYVML  INDS   A  L 
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKM 388


>gi|294010894|ref|YP_003544354.1| hypothetical protein SJA_C1-09080 [Sphingobium japonicum UT26S]
 gi|292674224|dbj|BAI95742.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
          Length = 419

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 192/388 (49%), Positives = 265/388 (68%), Gaps = 15/388 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ R ++  AL + G+  +  ++R+ Q++ W+Y RG  DF  M+D+++ +R  + 
Sbjct: 31  RVDLMGLSRPQIRGALEEAGLDVKQAKLRSKQLFHWLYHRGETDFDAMTDLAKPMRGWMA 90

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F +  PE+V+ ++S DGTRKWLLR          + E V+IP+  RGTLCVSSQVGC+
Sbjct: 91  ERFVVGRPEVVEAQVSSDGTRKWLLR-----SDDGQDYEMVFIPDADRGTLCVSSQVGCT 145

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--------GCEDIEGMVIPSVGR 177
           L C FC+TGT +LVRNLT  EI+ QV+LAR  LG++P          E  +     + GR
Sbjct: 146 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGSMASANDDEADDASQYSTDGR 205

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            ++NIVMMGMGEPL NFD+V+ +L +  D  GL+ SKRRITLSTSG VP +AR GEEIGV
Sbjct: 206 MLTNIVMMGMGEPLYNFDHVRDALKVVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGV 265

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHAV+ D+R+ LVP+N+KY +E L+ AC  YPG +NARRITFEYVM+K  NDS  
Sbjct: 266 NLAVSLHAVTKDVRDELVPLNKKYGIEDLLQACADYPGANNARRITFEYVMIKDKNDSDA 325

Query: 298 DALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           DA  L+++L+   +PAK+NLIPFNPWPG +Y CS  + I  FS+ +   G S+P+RTPRG
Sbjct: 326 DARELVRLLRQYKLPAKVNLIPFNPWPGTDYECSTPERIRRFSDIVFEGGISAPVRTPRG 385

Query: 356 LDILAACGQLKSLSKRIPKVPRQEMQIT 383
            DI+AACGQLKS S++  +     +   
Sbjct: 386 RDIMAACGQLKSASEKKSRAELDRLAAE 413


>gi|238763546|ref|ZP_04624507.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           kristensenii ATCC 33638]
 gi|238698178|gb|EEP90934.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           kristensenii ATCC 33638]
          Length = 398

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 160/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           V  +  R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AVKATGIRPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +E  + A R Y   SN    R+T EYVML  INDS   A  L 
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKM 388


>gi|212710618|ref|ZP_03318746.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
           30120]
 gi|212686699|gb|EEB46227.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
           30120]
          Length = 399

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 159/379 (41%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E   ++G        R  Q+ KWIY     DF  M+DI++ +R  L
Sbjct: 31  QKINLLDLNRKQMREFFAELG----EKPFRADQVMKWIYHYCFDDFDQMTDINKVLRAKL 86

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ DE+ S DGT KW ++   +       +ETVYIPE  R TLCVSSQVGC
Sbjct: 87  KEVAEIRAPEVADEQRSSDGTIKWAIKVGDQL------VETVYIPEADRATLCVSSQVGC 140

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G           +  S  R I+N+VM
Sbjct: 141 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSSGRRPITNVVM 190

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+T+STSG VP + ++G+ I V LAISLH
Sbjct: 191 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLH 250

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPIN+KY +E  + +   Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 251 APTDDVRDEIVPINKKYNIETFLASVNRYLTKSNANAGRVTVEYVMLDHINDSVEQAHQL 310

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P+KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 311 AECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 370

Query: 363 GQLKSLS-KRIPKVPRQEM 380
           GQL      R  +  ++ +
Sbjct: 371 GQLAGDVIDRTKRTLKKRL 389


>gi|153948736|ref|YP_001400164.1| ribosomal RNA large subunit methyltransferase N [Yersinia
           pseudotuberculosis IP 31758]
 gi|170023536|ref|YP_001720041.1| ribosomal RNA large subunit methyltransferase N [Yersinia
           pseudotuberculosis YPIII]
 gi|205829929|sp|A7FFY6|RLMN_YERP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829933|sp|B1JS02|RLMN_YERPY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|152960231|gb|ABS47692.1| radical SAM domain protein, Cfr family [Yersinia pseudotuberculosis
           IP 31758]
 gi|169750070|gb|ACA67588.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis YPIII]
          Length = 398

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 159/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSVDGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +E  + A R Y   S  N  R+T EYVML  INDS   A  L 
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKM 388


>gi|226946070|ref|YP_002801143.1| hypothetical protein Avin_40320 [Azotobacter vinelandii DJ]
 gi|226720997|gb|ACO80168.1| Conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 381

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 171/379 (45%), Positives = 227/379 (59%), Gaps = 21/379 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN   K +L+G+ + +LE     IG      R R  Q+ KWI+  G+ DF  MS+I + +
Sbjct: 1   MNETTKANLLGLTQPQLESFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMSNIGKAL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L     I  PE+V + IS DGTRKW++R     +     +ETVYIP+  RGTLCVSS
Sbjct: 57  REKLKACAEIRGPEVVSQDISGDGTRKWVVR-----VASGSCVETVYIPQAGRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GCSL CSFC TG Q    +LTA EI+ QV +A    G  PG  D          R I+
Sbjct: 112 QAGCSLDCSFCSTGKQGFNSDLTAAEIIGQVWIANKSFGTVPGKID----------RAIT 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL NFDN   ++ I  D +G   SKR++TLSTSG  P I  +G+ I V LA
Sbjct: 162 NVVMMGMGEPLMNFDNAVAAMQIMMDDLGYGISKRKVTLSTSGVAPMIDELGKIIDVSLA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDA 299
           +SLHA +++LRN LVPINRKYPL  ++DACR Y      +R+ T EY +LK +ND P  A
Sbjct: 222 LSLHAPNDELRNRLVPINRKYPLAQVLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHA 281

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             ++++L+ +P KINLIPFNP+P   Y       I  F + + ++G++  +RT RG DI 
Sbjct: 282 AQMVELLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGEDID 341

Query: 360 AACGQL-KSLSKRIPKVPR 377
           AACGQL   +  R  +  R
Sbjct: 342 AACGQLVGQVMDRTRRSER 360


>gi|123441415|ref|YP_001005402.1| ribosomal RNA large subunit methyltransferase N [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|205829928|sp|A1JKR9|RLMN_YERE8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|122088376|emb|CAL11167.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 398

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 160/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           V  +  R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AVKATGIRPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +E  + A R Y   SN    R+T EYVML  INDS   A  L 
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKM 388


>gi|15803040|ref|NP_289070.1| hypothetical protein Z3780 [Escherichia coli O157:H7 EDL933]
 gi|12516911|gb|AAG57627.1|AE005481_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 384

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 156/382 (40%), Positives = 213/382 (55%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+    E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKXXNXETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+P   Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  R+ MQ   
Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378


>gi|114568582|ref|YP_755262.1| radical SAM protein [Maricaulis maris MCS10]
 gi|122317061|sp|Q0ATR3|RLMN_MARMM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|114339044|gb|ABI64324.1| 23S rRNA m(2)A-2503 methyltransferase [Maricaulis maris MCS10]
          Length = 396

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 191/378 (50%), Positives = 264/378 (69%), Gaps = 15/378 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            SL GM REEL    +  G+ ++  +MR  Q+W+WIY  G+  F  M++IS+++R ++  
Sbjct: 26  PSLAGMTREELRLVAIDCGVEEKKAKMRAEQLWRWIYHYGVTSFDEMTNISKDLRAVIAD 85

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125
            +++  P+++D ++S DGTRK+L+          VE ETV+IP+ +R G LCVSSQVGC+
Sbjct: 86  KYALHRPKLIDRQVSVDGTRKYLIELAP-----GVECETVFIPDVARSGALCVSSQVGCT 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC+TGTQ LVRNLTA EI+ QV++AR  L ++P   +          RKI+NIV M
Sbjct: 141 LNCTFCHTGTQALVRNLTAAEIVAQVMIARDDLDEWPTSNE---------NRKITNIVFM 191

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D+V  S+ I SD  G++ S+RR T+STSG VP I  +G   G MLAISLHA
Sbjct: 192 GMGEPLYNLDHVATSIDIISDGEGIAISRRRTTVSTSGVVPKIEELGARTGTMLAISLHA 251

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LR+ LVP+N+KYPL  L++A R YPGL N++R+TFEYVMLKG+NDS  +A  L+K+
Sbjct: 252 TNDTLRDELVPLNKKYPLVELMNAIRAYPGLGNSKRVTFEYVMLKGVNDSLAEAKALVKL 311

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGIPAKINLIPFNPWP   Y CSD   I  F++ + ++GY+SPIRTPRG DI AACGQL
Sbjct: 312 LKGIPAKINLIPFNPWPKSPYECSDWDQIEAFADVVNKAGYASPIRTPRGRDIFAACGQL 371

Query: 366 KSLSKRIPKVPRQEMQIT 383
           +S S+++     ++ ++ 
Sbjct: 372 RSESQKVKASVLRKQRLA 389


>gi|15677174|ref|NP_274327.1| hypothetical protein NMB1308 [Neisseria meningitidis MC58]
 gi|81784539|sp|Q9JZ42|RLMN_NEIMB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|7226549|gb|AAF41683.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|316984107|gb|EFV63085.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
 gi|325130328|gb|EGC53094.1| radical SAM enzyme, Cfr family [Neisseria meningitidis OX99.30304]
 gi|325136188|gb|EGC58796.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M0579]
 gi|325140467|gb|EGC62988.1| radical SAM enzyme, Cfr family [Neisseria meningitidis CU385]
 gi|325200066|gb|ADY95521.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
 gi|325201981|gb|ADY97435.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240149]
 gi|325208268|gb|ADZ03720.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NZ-05/33]
          Length = 364

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 159/377 (42%), Positives = 229/377 (60%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +W++  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQAGIEIPKLMMSQKSSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +  +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|261419372|ref|YP_003253054.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp.
           Y412MC61]
 gi|319766187|ref|YP_004131688.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC52]
 gi|261375829|gb|ACX78572.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC61]
 gi|317111053|gb|ADU93545.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC52]
          Length = 365

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 200/366 (54%), Gaps = 25/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+  +  +EL+E L+  G        R +QI++W+Y   + DF  M+++ + +R  L  
Sbjct: 20  PSIYSLTLDELKEWLVAQG----EKPFRATQIYEWLYKNRVTDFADMTNLPKRLREQLAS 75

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            FSI   + V ++ S DGT K+L             IETV +      ++CV++QVGC +
Sbjct: 76  SFSITTLKTVVKQTSKDGTIKFLFELHD-----GYSIETVLMRHNYGNSVCVTTQVGCRI 130

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L R+L A EI+ QV+  +  L D                 ++S+IV+MG
Sbjct: 131 GCTFCASTLGGLKRHLEAGEIVAQVVQVQKALDD--------------TNERVSSIVVMG 176

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEP  N+D + K L I +   GL+   R IT+STSG +P I +  +E + +  AISLHA
Sbjct: 177 IGEPFDNYDALIKFLRIVNHPKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+LR  L+PIN+ YPL  L++A R+Y   +   R+TFEY +  G+ND    A  L ++
Sbjct: 237 PTNELRTKLMPINKAYPLPKLMEAVRYYIEKTGR-RVTFEYGLFGGVNDQLEHAEQLAEL 295

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KG+   +NLIP N  P   Y+ + +  I  F   +K+ G +  IR   G DI AACGQL
Sbjct: 296 IKGLKCHVNLIPVNYVPERNYVRTPRSQIFAFERALKKHGINVTIRREHGHDIDAACGQL 355

Query: 366 KSLSKR 371
           ++  ++
Sbjct: 356 RAKERK 361


>gi|238794833|ref|ZP_04638434.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           intermedia ATCC 29909]
 gi|238725846|gb|EEQ17399.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           intermedia ATCC 29909]
          Length = 398

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 160/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ +   ++G        R  Q+ KWIY     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMRQFFAEMG----EKPFRADQVMKWIYHYCFDDFEQMTDINKVLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVTEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           V  +  R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AVKATGIRPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +E  + A R Y   S  N  R+T EYVML  INDS   A  L 
Sbjct: 251 PTDDIRDEIVPINRKYNIEAFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSVEQAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKM 388


>gi|258542583|ref|YP_003188016.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633661|dbj|BAH99636.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636720|dbj|BAI02689.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639773|dbj|BAI05735.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642829|dbj|BAI08784.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645884|dbj|BAI11832.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648937|dbj|BAI14878.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651924|dbj|BAI17858.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654981|dbj|BAI20908.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 408

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 190/372 (51%), Positives = 255/372 (68%), Gaps = 18/372 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ R+EL + L +IG        RT Q+W WIY +G+ DF  MS I++ ++  L 
Sbjct: 47  RRDLVGLSRDELTDILTEIG----EKPFRTKQLWHWIYHQGVTDFSRMSTIAKPLQQKLA 102

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123
           + F I  PE    + S D TRK+L RF         E ETVYIP++   RG +C+SSQVG
Sbjct: 103 ERFIIGRPEAATVQTSSDETRKFLFRFRD-----GQEAETVYIPDRREDRGAVCISSQVG 157

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C+FC+TGTQKLVRNL A EI+ Q + AR   G++P  +           R +S IV
Sbjct: 158 CTLSCTFCHTGTQKLVRNLGAAEIVSQFMAARDSYGEWPSPKG-------ETPRLLSTIV 210

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++NV K++ I  D  G+  S+RRITLSTSG VP + R G+E+G+ LA+SL
Sbjct: 211 LMGMGEPLYNYENVAKAMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSL 270

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV NDLR+ +VP+NRKYP+E ++ ACR YP  SNARRITFEY+ML+GINDS  DA  L+
Sbjct: 271 HAVRNDLRDEIVPLNRKYPIEEVLAACRRYPAASNARRITFEYIMLRGINDSEADARELV 330

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG +Y  S ++    F+E +  +G++SPIRTPRG DILAACG
Sbjct: 331 RLISGIPAKVNLIPFNPWPGSDYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACG 390

Query: 364 QLKSLSKRIPKV 375
           QLK+ S+R    
Sbjct: 391 QLKTASERARAS 402


>gi|94501127|ref|ZP_01307650.1| hypothetical protein RED65_06057 [Oceanobacter sp. RED65]
 gi|94426703|gb|EAT11688.1| hypothetical protein RED65_06057 [Oceanobacter sp. RED65]
          Length = 378

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 161/375 (42%), Positives = 224/375 (59%), Gaps = 21/375 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+G+  +++++  +++G        R  QI KWI+  GI +F  M+++S+ +R  L
Sbjct: 6   EKVNLLGLSPKKMKDFFVELG----EKPFRAQQILKWIHQVGIDNFDDMTNVSKVMREKL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
               ++ YPE+V   IS DGT+KW++R P     G   +ETVYIPE  RGTLCVSSQ+GC
Sbjct: 62  KDVATVQYPEVVFHDISKDGTKKWVMRMP-----GGSSVETVYIPEGDRGTLCVSSQIGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q   R+L+  EI+ QV +A           +          RKI+N+VM
Sbjct: 117 SLDCSFCSTGKQGFNRDLSVAEIIGQVYVAAKSFDKPGEKRE----------RKITNVVM 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++ +  D      SKRR+TLSTSG VP +  + +   V LA+SLH
Sbjct: 167 MGMGEPLMNFDNVVDAMDLMMDDFCYGLSKRRVTLSTSGVVPKLYDLADVSDVSLAVSLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDALNLI 303
           A +++LRN LVPIN+KYP++ L+ AC HY   LS+ R++T EY ++  +ND    A  L 
Sbjct: 227 APNDELRNELVPINKKYPIKDLMAACNHYMGSLSDRRKLTVEYTLINKVNDELEHAQQLA 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LK  P KINLIPFNP+P   Y       +  F + +   G+   IRT RG DI AACG
Sbjct: 287 KLLKDTPCKINLIPFNPFPNSGYERPSNNRVYKFRDYLHSQGFIVTIRTTRGDDIDAACG 346

Query: 364 QLKSLSK-RIPKVPR 377
           QL    + R  +  R
Sbjct: 347 QLVGKVEDRTRRSER 361


>gi|332162639|ref|YP_004299216.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666869|gb|ADZ43513.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859271|emb|CBX69621.1| ribosomal RNA large subunit methyltransferase N [Yersinia
           enterocolitica W22703]
          Length = 397

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 159/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 30  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCFDDFEQMTDINKVLRAKLQ 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 86  RVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGCA 139

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I+N+VMM
Sbjct: 140 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 189

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 190 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 249

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +E  + A R Y   SN    R+T EYVML  INDS   A  L 
Sbjct: 250 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 309

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 310 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 369

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 370 QLAGEVIDRTKRTLKKKM 387


>gi|119897215|ref|YP_932428.1| hypothetical protein azo0924 [Azoarcus sp. BH72]
 gi|205829650|sp|A1K3Y6|RLMN_AZOSB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|119669628|emb|CAL93541.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 375

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 161/385 (41%), Positives = 221/385 (57%), Gaps = 14/385 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN     +L+    + L +    +G        R  Q+ +W++  G  DF  M+D+++ +
Sbjct: 1   MNT--PVNLLDFDVDGLVDWFAGLG----EKPFRARQVMRWMHREGCDDFDQMTDVAKSL 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  P  V + +S DGTRKWLL      +G    +ETV+IPE +RGTLCVSS
Sbjct: 55  RAKLKEIAVIRPPVPVRDSVSSDGTRKWLL-----DVGNANAVETVFIPETNRGTLCVSS 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC+L C+FC TG Q   RNLTA EI+ Q+ LA  LLG                GR IS
Sbjct: 110 QAGCALDCAFCSTGKQGFNRNLTAAEIIGQLWLANKLLGAARDAAADLEAGEKDNGRIIS 169

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL NFDNV  +L +  D      S+RR+T+STSG VP I R+ +E  V LA
Sbjct: 170 NVVMMGMGEPLANFDNVVTALRLMLDDHAYGLSRRRVTVSTSGIVPAIDRLRDECPVALA 229

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVPIN+KYPL  L+ AC+ Y   +    ITFEYVML G+ND    A 
Sbjct: 230 VSLHASNDALRDRLVPINQKYPLRELMAACQRYLERAPRDFITFEYVMLDGVNDQEAHAR 289

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI +++ +P K NLIPFNP+P   +  S+ + I  F+  +  +G  +  R  RG D+ A
Sbjct: 290 ELIALVRDVPCKFNLIPFNPFPNSGFQRSNAERIRRFAGILLDAGIVTTTRKTRGDDVDA 349

Query: 361 ACGQLKSLSKRIPKVP---RQEMQI 382
           ACGQL    +   +     +Q M++
Sbjct: 350 ACGQLAGQVQDKTRRTVRLKQSMEV 374


>gi|253996236|ref|YP_003048300.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8]
 gi|253982915|gb|ACT47773.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8]
          Length = 367

 Score =  461 bits (1186), Expect = e-128,   Method: Composition-based stats.
 Identities = 154/373 (41%), Positives = 220/373 (58%), Gaps = 15/373 (4%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+   +++L +     G        R  Q+ +W++  G+ DF+ M+DI++ +R  L  
Sbjct: 2   VNLLNYNQKQLAQWFADRG----EKPFRAKQLMRWMHHFGVHDFEQMTDIAKNLREKLAV 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P +   ++S DGTRKWL+            IETV+IPE  RGTLCVSSQVGC+L
Sbjct: 58  DAEITLPTVQLAQVSNDGTRKWLI-----GTDTANSIETVFIPEDDRGTLCVSSQVGCAL 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG Q   RNL+  EI+ QV +A   L   PG +     ++P+  R ISN+VMMG
Sbjct: 113 ECTFCSTGRQGFNRNLSVAEIIGQVAIANQTLRQEPGYD-----MLPANDRIISNVVMMG 167

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+DNV  ++ I  D      S+RR+TLSTSG VP + R+ E+  V LA+SLHA 
Sbjct: 168 MGEPLANYDNVVTAMQIMLDDSAYGLSRRRVTLSTSGMVPAMDRLKEDCPVALAVSLHAP 227

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+++VPIN+KYPL+ L+ AC  Y   +    +TFEYVML G+ND+   A  L++++
Sbjct: 228 NDALRDVIVPINKKYPLKELMAACNRYLEKAPRDFVTFEYVMLDGVNDTVEHAHQLLELV 287

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           K +  K NLIPFNP+P   Y  S    +  F + + ++GY   +R  RG DI AACGQL 
Sbjct: 288 KNVSCKFNLIPFNPFPNSGYDTSKPNHVRVFRDILMQAGYVVTVRKTRGDDIDAACGQLA 347

Query: 367 SLS-KRIPKVPRQ 378
                +  +  R 
Sbjct: 348 GKVLDKTKRTARH 360


>gi|238752478|ref|ZP_04613954.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei
           ATCC 43380]
 gi|238709327|gb|EEQ01569.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei
           ATCC 43380]
          Length = 398

 Score =  461 bits (1186), Expect = e-128,   Method: Composition-based stats.
 Identities = 160/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   K+G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAKMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGERATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ALKSTGTRPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +E  + A R Y   S  N  R+T EYVML  INDS   A  L 
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKM 388


>gi|104780237|ref|YP_606735.1| radical SAM protein [Pseudomonas entomophila L48]
 gi|122985951|sp|Q1IEI4|RLMN_PSEE4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|95109224|emb|CAK13921.1| putative radical SAM enzyme, Cfr family [Pseudomonas entomophila
           L48]
          Length = 379

 Score =  461 bits (1186), Expect = e-128,   Method: Composition-based stats.
 Identities = 167/374 (44%), Positives = 223/374 (59%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+   E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KINLLGLTLAEMEQFFDSIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKVLREKLE 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V E IS DGTRKW++R     +     +ETVYIP   RGTLCVSSQ GC+
Sbjct: 63  AVAEIRGPEVVSEDISADGTRKWVVR-----VASGSCVETVYIPTDDRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV LA    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKID----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  + +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMEDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            +++LRN LVPIN+KYPL+ML+++C  Y      +R+ T EY +LK +ND P  A  +I+
Sbjct: 228 PNDELRNKLVPINKKYPLKMLLESCMGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ +P KINLIPFNP+P   Y       I  F + +   G++   RT RG DI AACGQ
Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   ++ R  +  R
Sbjct: 348 LVGQVNDRTRRSER 361


>gi|292489050|ref|YP_003531937.1| hypothetical protein EAMY_2582 [Erwinia amylovora CFBP1430]
 gi|292900179|ref|YP_003539548.1| hypothetical protein EAM_2478 [Erwinia amylovora ATCC 49946]
 gi|291200027|emb|CBJ47152.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
 gi|291554484|emb|CBA22015.1| UPF0063 protein yfgB [Erwinia amylovora CFBP1430]
 gi|312173205|emb|CBX81460.1| UPF0063 protein yfgB [Erwinia amylovora ATCC BAA-2158]
          Length = 388

 Score =  461 bits (1186), Expect = e-128,   Method: Composition-based stats.
 Identities = 161/383 (42%), Positives = 220/383 (57%), Gaps = 23/383 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E    +G        R  Q+ KWIY     DF  M+DI++  R+ L
Sbjct: 20  EKINLLDLNRQQMREFFASLG----EKPFRADQVMKWIYHYCCDDFNEMTDINKVFRNRL 75

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPEK R TLCVSSQVGC
Sbjct: 76  QELAEIRAPEVAEEQRSADGTIKWAIQV------GGQQVETVYIPEKDRATLCVSSQVGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 130 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 179

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VPIN+KY +E  + +   Y G SNA   R+T EYVML  INDS  +A  L
Sbjct: 240 APNDTIRDEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHEL 299

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 300 AALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 359

Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384
           GQL      R  +  +++M    
Sbjct: 360 GQLAGDVIDRTKRTLKKKMAGEA 382


>gi|308389428|gb|ADO31748.1| hypothetical protein NMBB_1442 [Neisseria meningitidis alpha710]
          Length = 364

 Score =  461 bits (1186), Expect = e-128,   Method: Composition-based stats.
 Identities = 158/377 (41%), Positives = 229/377 (60%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +W++  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQAGIEIPKLMMSQKSSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLT+ EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTSAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +  +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|238797961|ref|ZP_04641451.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           mollaretii ATCC 43969]
 gi|238718166|gb|EEQ09992.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           mollaretii ATCC 43969]
          Length = 398

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 160/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   K+G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAKMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +E  + A R Y   S  N  R+T EYVML  INDS   A  L 
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMDYGFTTIVRKTRGDDIDAACG 370

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKM 388


>gi|261365781|ref|ZP_05978664.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996]
 gi|288565687|gb|EFC87247.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996]
          Length = 364

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 159/377 (42%), Positives = 229/377 (60%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+      L     ++G        R  Q+ +WI+  G + F  M+D+++ +R  LN
Sbjct: 2   KTNLLNYDLNGLTHHFAEMG----EKPFRAKQVMRWIHQAGAQSFDEMTDLAKSLRLKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  S+  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQASVDVPKLMMAQESSDGTRKWLL-----DVGTGNGVETVFIPEAERGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI++
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|254418192|ref|ZP_05031916.1| radical SAM enzyme, Cfr family [Brevundimonas sp. BAL3]
 gi|196184369|gb|EDX79345.1| radical SAM enzyme, Cfr family [Brevundimonas sp. BAL3]
          Length = 390

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 199/375 (53%), Positives = 269/375 (71%), Gaps = 16/375 (4%)

Query: 7   ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
            +L G+ R  L +AL+   + P    +MR SQ+W WI+  G+ +F  MS+++++++  L 
Sbjct: 20  VNLSGLTRAGLRQALIDANVCPPEKAKMRASQVWSWIHHYGVTEFSAMSNVAKDMQAKLA 79

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
           +HF++  PEIV+ ++S DGTRKWL+R         +EIETVYIP+  R G LCVSSQVGC
Sbjct: 80  EHFTLARPEIVERQVSKDGTRKWLIRTAP-----GIEIETVYIPDVGRAGALCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQKLVRNLTA EI+ QV +AR  L ++P          P   R++SNIV 
Sbjct: 135 TLNCTFCHTGTQKLVRNLTAAEIVAQVQVARDDLEEWPS---------PKEDRRLSNIVF 185

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N D+V  ++ I SD+ G++ S+RRIT+STSG  P +  +G     MLAISLH
Sbjct: 186 MGMGEPLYNLDHVADAIDIISDNEGIALSRRRITVSTSGVAPQLDALGTRTAAMLAISLH 245

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR++LVP+N+KYPL+ L+   R YPGLSNARR+TFEYVMLKG+NDSP +A  L+K
Sbjct: 246 ATNDALRDVLVPLNKKYPLDQLMAGIRAYPGLSNARRVTFEYVMLKGVNDSPEEARALLK 305

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +++GIPAKINLIPFNPWPG EY CSD K I  F+  + ++GY+SPIRTPRG DILAACGQ
Sbjct: 306 LIEGIPAKINLIPFNPWPGVEYECSDWKTIERFAAILNKAGYASPIRTPRGRDILAACGQ 365

Query: 365 LKSLSKRIPKVPRQE 379
           LKS S+++     ++
Sbjct: 366 LKSESEKVRASALRK 380


>gi|291618414|ref|YP_003521156.1| YfgB [Pantoea ananatis LMG 20103]
 gi|291153444|gb|ADD78028.1| YfgB [Pantoea ananatis LMG 20103]
 gi|327394806|dbj|BAK12228.1| radical SAM Cfr family YfgB [Pantoea ananatis AJ13355]
          Length = 389

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 162/383 (42%), Positives = 223/383 (58%), Gaps = 23/383 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E  + +G        R  Q+ KWIY     DF+ M+DI++++R+ L
Sbjct: 21  QKINLLDLNRQQMREFFVSLG----EKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ +E  S DGT KW +R   +       +ETVYIPE  R TLCVSSQVGC
Sbjct: 77  MELTEIRAPEVAEEMRSTDGTIKWAIRVGDQL------VETVYIPEGDRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ LR+ +VPIN+KY +E  + A + Y G SNA   R+T EYV+L  +NDS  DA  L
Sbjct: 241 APNDKLRDDIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHEL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360

Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384
           GQL      R  +  R++M    
Sbjct: 361 GQLAGEVIDRTKRTLRKKMAGEA 383


>gi|261345336|ref|ZP_05972980.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
 gi|282566377|gb|EFB71912.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
          Length = 393

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 221/379 (58%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E   ++G        R  Q+ KWIY     DF  M+DI++ +R  L
Sbjct: 25  QKINLLDLNRKQMREFFAELG----EKPFRADQVMKWIYHYCYDDFDQMTDINKVLRTKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ DE+ S DGT KW ++   +       +ETVYIPE  R TLCVSSQVGC
Sbjct: 81  KEVAEIRAPEVADEQRSSDGTIKWAIKVGDQL------VETVYIPEADRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I+N+VM
Sbjct: 135 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGRRPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+T+STSG VP + ++G+ I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPIN+KY +E  +++   Y   SNA   R+T EYVML  INDS   A  L
Sbjct: 245 APTDDVRDEIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHINDSVEQAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P+KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 305 AECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 364

Query: 363 GQLKSLS-KRIPKVPRQEM 380
           GQL      R  +  ++ +
Sbjct: 365 GQLAGDVIDRTKRTLKKRL 383


>gi|238785318|ref|ZP_04629307.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           bercovieri ATCC 43970]
 gi|238713771|gb|EEQ05794.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
           bercovieri ATCC 43970]
          Length = 398

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 160/378 (42%), Positives = 217/378 (57%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAQMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKALRAKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+  E+ S DGT KW +           ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAQEQRSADGTIKWAITVGD------QQVETVYIPEADRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303
            ++D+RN +VPINRKY +E  + A R Y   S  N  R+T EYVML  INDS   A  L 
Sbjct: 251 PTDDIRNEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSVEQAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  ++ M
Sbjct: 371 QLAGEVIDRTKRTLKKRM 388


>gi|284006771|emb|CBA72033.1| radical SAM superfamily protein [Arsenophonus nasoniae]
          Length = 389

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 161/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ M R+++ +     G        R  Q+ KWIY     DF  M+DI++ +R+ L 
Sbjct: 22  KVNLLDMDRKQMRQFFSDTG----EKPFRADQVMKWIYHHCYDDFDLMTDINKVLRNKLK 77

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q   I  PEI  E+ S DGT KW +        G  ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 78  QAAEIRAPEIAQEQRSTDGTIKWAI------TVGEQQVETVYIPEDDRATLCVSSQVGCA 131

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  S  R I+N+VMM
Sbjct: 132 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKVIG----------SLKSSGRRPITNVVMM 181

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 182 GMGEPLLNLNNVIPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 241

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + + R Y   SNA   R+T EYVML G+NDS   A  L 
Sbjct: 242 PTDEIRDEIVPINKKYNIETFLASVRRYLTKSNANQGRVTVEYVMLNGVNDSIEHAHQLA 301

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P+KINLIP+NP+PG  Y  S    I  F++ + + G+++ +R  RG DI AACG
Sbjct: 302 ECLKHTPSKINLIPWNPFPGAPYSRSSNSRIDRFAKVLMKYGFTTIVRKTRGDDIDAACG 361

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  ++ +
Sbjct: 362 QLAGDVIDRTKRTLKKRL 379


>gi|329115338|ref|ZP_08244092.1| Ribosomal RNA large subunit methyltransferase N [Acetobacter
           pomorum DM001]
 gi|326695317|gb|EGE47004.1| Ribosomal RNA large subunit methyltransferase N [Acetobacter
           pomorum DM001]
          Length = 408

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 189/370 (51%), Positives = 255/370 (68%), Gaps = 18/370 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ R+EL + L++IG        RT Q+W WIY +G+ DF  MS I++ ++  L 
Sbjct: 47  RRDLVGLSRDELTDILIEIG----EKPFRTKQLWHWIYHQGVTDFSRMSTIAKPLQQKLA 102

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123
           + F I  PE    + S D TRK+L RF         E ETVYIP++   RG +C+SSQVG
Sbjct: 103 ERFIIGRPEAATVQTSSDSTRKFLFRFRD-----GQEAETVYIPDRREDRGAVCISSQVG 157

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C+FC+TGTQKLVRNL A EI+ Q + AR   G++P  +           R +S IV
Sbjct: 158 CTLSCTFCHTGTQKLVRNLGAAEIVSQFMAARDSYGEWPSPKG-------ETPRLLSTIV 210

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++NV K++ I  D  G+  S+RRITLSTSG VP + R G+E+G+ LA+SL
Sbjct: 211 LMGMGEPLYNYENVAKAMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSL 270

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV NDLR+ +VP+NRKYP+E ++ ACR YP  SNARRITFEY+ML+G+NDS  DA  L+
Sbjct: 271 HAVRNDLRDEIVPLNRKYPIEEVLAACRRYPAASNARRITFEYIMLRGVNDSEADARELV 330

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG  Y  S ++    F+E +  +G++SPIRTPRG DILAACG
Sbjct: 331 RLISGIPAKVNLIPFNPWPGSAYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACG 390

Query: 364 QLKSLSKRIP 373
           QLK+ S+R  
Sbjct: 391 QLKTASERAR 400


>gi|293610293|ref|ZP_06692594.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827525|gb|EFF85889.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124474|gb|ADY83997.1| putative Fe-S-cluster redox enzyme [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 411

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 169/388 (43%), Positives = 231/388 (59%), Gaps = 24/388 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+GM R ELE+    IG      + R  Q+ KWI+   + DF  M++IS ++R  L
Sbjct: 29  NKVNLLGMSRPELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 84

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120
            Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +     R TLC+SS
Sbjct: 85  EQICEIKAPEVVHRHYSKDGTRKWVFRVGE---GAGSLVETVLIPAEDKTGLRKTLCISS 141

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L CSFC TG Q   R+LT +EI+ Q+ +A     +     + E        R ++
Sbjct: 142 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERE--------RSVT 193

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 253

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296
           ISLHA +++LRN LVPIN+KYPL  LI AC+ Y       S  + +T EYVML+G+ND P
Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQP 313

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  +IK+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  RG 
Sbjct: 314 EHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 373

Query: 357 DILAACGQL-KSLSKRIPKVPRQEMQIT 383
           DI AACGQL   ++ R  +  + + ++T
Sbjct: 374 DIDAACGQLVGQVADRTRRAEQWQKKVT 401


>gi|254670500|emb|CBA06240.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|325128395|gb|EGC51278.1| radical SAM enzyme, Cfr family [Neisseria meningitidis N1568]
          Length = 364

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 159/377 (42%), Positives = 229/377 (60%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +W++  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQAGIEIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +  +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|326794512|ref|YP_004312332.1| ribosomal RNA large subunit methyltransferase N [Marinomonas
           mediterranea MMB-1]
 gi|326545276|gb|ADZ90496.1| Ribosomal RNA large subunit methyltransferase N [Marinomonas
           mediterranea MMB-1]
          Length = 373

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 162/383 (42%), Positives = 224/383 (58%), Gaps = 18/383 (4%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M+  +K +L+G+  E+L E    IG      + R +Q+ KWI+ +G   F+ M+D+S+++
Sbjct: 1   MSATQKVNLLGLSPEKLVEFFESIG----EKKFRATQVMKWIHQKGAESFEEMTDVSKKL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L     I  PEIV++ IS DGTRKW++R           +ETV IP+  R TLCVSS
Sbjct: 57  RAKLEGICEIRAPEIVEQNISTDGTRKWIIRTEGGMND---CVETVLIPDGDRATLCVSS 113

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL CSFC TG Q   RNLT  EI+ Q+ +A    G             P+  R+++
Sbjct: 114 QVGCSLDCSFCSTGKQGFNRNLTPAEIIGQLWIAIKSFGPMD----------PNGPRRVT 163

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL NF+ V  ++ +         SKRR+TLSTSG VP I  + +   V LA
Sbjct: 164 NVVMMGMGEPLMNFEPVVDAMILMMHDNAYGLSKRRVTLSTSGVVPKIYELVKRTDVSLA 223

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDA 299
           ISLHA +N LR+ LVPINRKYP+E L++AC+HY   L + R IT EY M+ G+ND  + A
Sbjct: 224 ISLHAPNNPLRDELVPINRKYPIEELLEACQHYLDNLPDKRHITIEYTMMAGVNDQEQHA 283

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L  +LK +  K+NLIPFNP+P   Y          F + +   GY+  +RT RG DI 
Sbjct: 284 RELAHLLKDLECKVNLIPFNPFPHSGYEKPSNNQTRRFQKILADDGYTVTVRTTRGDDID 343

Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382
           AACGQL        +  ++ +++
Sbjct: 344 AACGQLVGDFHDKTRRSQKYIEL 366


>gi|59801026|ref|YP_207738.1| hypothetical protein NGO0596 [Neisseria gonorrhoeae FA 1090]
 gi|194098883|ref|YP_002001947.1| hypothetical protein NGK_1322 [Neisseria gonorrhoeae NCCP11945]
 gi|239999168|ref|ZP_04719092.1| hypothetical protein Ngon3_06775 [Neisseria gonorrhoeae 35/02]
 gi|240013924|ref|ZP_04720837.1| hypothetical protein NgonD_04618 [Neisseria gonorrhoeae DGI18]
 gi|240016366|ref|ZP_04722906.1| hypothetical protein NgonFA_04214 [Neisseria gonorrhoeae FA6140]
 gi|240080485|ref|ZP_04725028.1| hypothetical protein NgonF_04112 [Neisseria gonorrhoeae FA19]
 gi|240113147|ref|ZP_04727637.1| hypothetical protein NgonM_06171 [Neisseria gonorrhoeae MS11]
 gi|240118201|ref|ZP_04732263.1| hypothetical protein NgonPID_07036 [Neisseria gonorrhoeae PID1]
 gi|240121493|ref|ZP_04734455.1| hypothetical protein NgonPI_06948 [Neisseria gonorrhoeae PID24-1]
 gi|240123749|ref|ZP_04736705.1| hypothetical protein NgonP_07399 [Neisseria gonorrhoeae PID332]
 gi|240125940|ref|ZP_04738826.1| hypothetical protein NgonSK_06937 [Neisseria gonorrhoeae SK-92-679]
 gi|240128452|ref|ZP_04741113.1| hypothetical protein NgonS_07451 [Neisseria gonorrhoeae SK-93-1035]
 gi|254493940|ref|ZP_05107111.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268594999|ref|ZP_06129166.1| ribosomal RNA large subunit methyltransferase N [Neisseria
           gonorrhoeae 35/02]
 gi|268596621|ref|ZP_06130788.1| ribosomal RNA large subunit methyltransferase N [Neisseria
           gonorrhoeae FA19]
 gi|268599227|ref|ZP_06133394.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268603913|ref|ZP_06138080.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682376|ref|ZP_06149238.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268684534|ref|ZP_06151396.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268686844|ref|ZP_06153706.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|293398890|ref|ZP_06643055.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
 gi|75356171|sp|Q5F911|RLMN_NEIG1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807190|sp|B4RMG2|RLMN_NEIG2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|59717921|gb|AAW89326.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193934173|gb|ACF29997.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512980|gb|EEH62325.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548388|gb|EEZ43806.1| ribosomal RNA large subunit methyltransferase N [Neisseria
           gonorrhoeae 35/02]
 gi|268550409|gb|EEZ45428.1| ribosomal RNA large subunit methyltransferase N [Neisseria
           gonorrhoeae FA19]
 gi|268583358|gb|EEZ48034.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268588044|gb|EEZ52720.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622660|gb|EEZ55060.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268624818|gb|EEZ57218.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627128|gb|EEZ59528.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291610304|gb|EFF39414.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
 gi|317164455|gb|ADV07996.1| hypothetical protein NGTW08_1028 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 364

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 159/377 (42%), Positives = 230/377 (61%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +W++  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  SI  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQASIEIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML G+ND  + A  LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S  ++I  F + ++++ +   +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRIFRDILQQAEFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|218768330|ref|YP_002342842.1| hypothetical protein NMA1522 [Neisseria meningitidis Z2491]
 gi|205829822|sp|A1ISB3|RLMN_NEIMA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|121052338|emb|CAM08669.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
 gi|261392411|emb|CAX49953.1| conserved hypothetical protein [Neisseria meningitidis 8013]
 gi|319410575|emb|CBY90944.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
 gi|325134450|gb|EGC57095.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M13399]
          Length = 364

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 159/377 (42%), Positives = 229/377 (60%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +W++  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQAGIEIPKLMMSQKSSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +  +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|329897039|ref|ZP_08271811.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
 gi|328921479|gb|EGG28865.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
          Length = 383

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 219/382 (57%), Gaps = 22/382 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + +L+G+ R ++E    + G        R  Q+ KWI+  G+ DF+ M+++S+ +R  L+
Sbjct: 13  RVNLLGLTRAQMEAFFAECG----EKSFRAQQVMKWIHHHGVCDFEAMTNLSKSLRAKLS 68

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   +  PE+V    S DGTRKWL+R     +     +E+V IP+  R TLCVSSQVGCS
Sbjct: 69  ERACVRPPEVVSRHDSADGTRKWLVRSIEGGL-----VESVLIPDGDRATLCVSSQVGCS 123

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   R+LTA +I+ QV LA      F           P   R ++N+VMM
Sbjct: 124 LDCSFCSTGKQGFERDLTASDIIGQVWLAIDSFDAF----------QPGKDRVVTNVVMM 173

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFD V  ++ +  D +    SKRR+TLSTSG VP + ++ E   V LA+SLHA
Sbjct: 174 GMGEPLLNFDAVVSAMDLMMDDLAYGLSKRRVTLSTSGVVPALDKLAEVSCVSLAVSLHA 233

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303
            ++ LRN LVPIN+KYP+  L+ + + Y    N R+  +T EY ++ G+ND P  A  L 
Sbjct: 234 PNDALRNQLVPINKKYPIAELLASAQRYLDAQNDRKRVVTIEYTLIAGVNDQPEHARELA 293

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LK  P KINLIPFN +PG  Y       +  F + +  +G+   +RT RG DI AACG
Sbjct: 294 VLLKNFPCKINLIPFNAFPGSSYQRPSGNAVSRFWQVLIDAGFIVTVRTTRGDDISAACG 353

Query: 364 QL-KSLSKRIPKVPRQEMQITG 384
           QL   +  R  +  R +  + G
Sbjct: 354 QLVGDVVDRTKRSQRHKAALEG 375


>gi|225075197|ref|ZP_03718396.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens
           NRL30031/H210]
 gi|224953372|gb|EEG34581.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens
           NRL30031/H210]
          Length = 398

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 158/377 (41%), Positives = 231/377 (61%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+      L +   ++G        R  Q+ +W++  G ++F+ M+D+++ +R  LN
Sbjct: 38  KTNLLNYDLNGLTQHFAEMG----EKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLN 93

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  +I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 94  EQATIEVPKLMMAQESTDGTRKWLL-----DVGTGNGVETVFIPEAERGTLCISSQVGCA 148

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 149 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 197

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 198 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 257

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI++
Sbjct: 258 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 317

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S  ++I  F + +++ G+   +R  RG DI AACGQL
Sbjct: 318 VKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQQVGFVVTVRKTRGDDIDAACGQL 377

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 378 AGQVQDKTRRQQKWQQI 394


>gi|325204309|gb|ADY99762.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240355]
          Length = 364

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 158/377 (41%), Positives = 229/377 (60%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +W++  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQAGIEIPKLMMSQKSSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLT+ EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTSAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +  +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|299771620|ref|YP_003733646.1| UPF0063 protein yfgB [Acinetobacter sp. DR1]
 gi|298701708|gb|ADI92273.1| UPF0063 protein yfgB [Acinetobacter sp. DR1]
          Length = 411

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 170/388 (43%), Positives = 231/388 (59%), Gaps = 24/388 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+GM R ELE+    IG      + R  Q+ KWI+   I DF  M++IS ++R  L
Sbjct: 29  NKVNLLGMSRTELEKFFEDIG----EKKFRAGQVMKWIHQYFITDFAEMTNISGKLRAKL 84

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120
            Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +     R TLC+SS
Sbjct: 85  EQICEIKAPEVVHRHYSKDGTRKWVFRVGD---GAGSLVETVLIPAEDKTGLRKTLCISS 141

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L CSFC TG Q   R+LT +EI+ Q+ +A     +     + E        R ++
Sbjct: 142 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERE--------RSVT 193

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 253

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296
           ISLHA +++LRN LVPIN+KYPL  LI AC+ Y       S  + +T EYVML+G+ND P
Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQP 313

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  +IK+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  RG 
Sbjct: 314 EHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 373

Query: 357 DILAACGQL-KSLSKRIPKVPRQEMQIT 383
           DI AACGQL   ++ R  +  + + ++T
Sbjct: 374 DIDAACGQLVGQVADRTRRAEQWQKKVT 401


>gi|329297584|ref|ZP_08254920.1| ribosomal RNA large subunit methyltransferase N [Plautia stali
           symbiont]
          Length = 376

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 161/383 (42%), Positives = 220/383 (57%), Gaps = 23/383 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E  +++G        R  Q+ KW+Y     DF+ M+DI++ +R  L
Sbjct: 8   EKINLLDLNRQQMREFFVEMG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRGKL 63

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+ +E  S DGT KW +R   +       +ETVYIPE  R TLCVSSQVGC
Sbjct: 64  MQRAEIRAPEVAEEMRSSDGTIKWAIRVGDQL------VETVYIPEADRATLCVSSQVGC 117

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 118 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 167

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 168 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VPIN+KY +E  + A + Y G SNA   R+T EYVML  +NDS   A  L
Sbjct: 228 APNDTIRDDIVPINKKYNIEAFLAAVKRYIGKSNANQGRVTIEYVMLDHVNDSTEHAHEL 287

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 288 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 347

Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384
           GQL      R  +  R++M    
Sbjct: 348 GQLAGDVIDRTKRTLRKKMAGEA 370


>gi|312962908|ref|ZP_07777395.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
           fluorescens WH6]
 gi|311282935|gb|EFQ61529.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
           fluorescens WH6]
          Length = 382

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 169/374 (45%), Positives = 227/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  GI DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGIDDFDAMTNVSKALRDKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R     +     +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  TIAEVRGPEVVSEDISSDGTRKWVVR-----VASGSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVISAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVPIN+KYPL+ML+++C+ Y      +R+ T EY +LK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMATLGEKRVLTIEYTLLKDINDKVEHAIEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKNTPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 348 LVGQVMDRTRRSER 361


>gi|317049139|ref|YP_004116787.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b]
 gi|316950756|gb|ADU70231.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b]
          Length = 389

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 161/383 (42%), Positives = 223/383 (58%), Gaps = 23/383 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E  + +G        R  Q+ KW+Y     DF+ M+DI++ +R  L
Sbjct: 21  EKINLLDLNRQQMREFFVSLG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRGKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+ +EK S DGT KW +R   +       +ETVYIPE  R TLCVSSQVGC
Sbjct: 77  MQLTEIRAPEVAEEKRSSDGTIKWAIRVGDQL------VETVYIPEDDRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ LR+ +VPIN+KY +E  + A + Y   SNA   R+T EYV+L  +NDS  DA  L
Sbjct: 241 APNDKLRDDIVPINKKYNIETFLAAVKRYLAKSNANQGRVTIEYVLLDHVNDSTDDAHQL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P+KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AAC
Sbjct: 301 AELLKDTPSKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 360

Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384
           GQL      R  +  R++M    
Sbjct: 361 GQLAGDVIDRTKRTMRKKMAGEA 383


>gi|188533171|ref|YP_001906968.1| hypothetical protein ETA_10250 [Erwinia tasmaniensis Et1/99]
 gi|254807181|sp|B2VE98|RLMN_ERWT9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|188028213|emb|CAO96071.1| Conserved hypothetical protein YfgB [Erwinia tasmaniensis Et1/99]
          Length = 389

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 161/383 (42%), Positives = 219/383 (57%), Gaps = 23/383 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E    +G        R  Q+ KWIY     DF  M+DI++  R+ L
Sbjct: 21  EKINLLDLNRQQMREFFAGLG----EKPFRADQVMKWIYHYCCDDFDEMTDINKVFRNRL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ +E+ S DGT KW ++       G  ++ETVYIPEK R TLCVSSQVGC
Sbjct: 77  KELAEIRAPEVAEEQRSSDGTIKWAIQV------GGQQVETVYIPEKDRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G                 R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ATKVIGQRPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VPIN+KY +E  + +   Y G SNA   R+T EYVML  INDS  +A  L
Sbjct: 241 APNDTIRDEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHEL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 360

Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384
           GQL      R  +  +++M    
Sbjct: 361 GQLAGDVIDRTKRTLKKKMAGEA 383


>gi|330936987|gb|EGH41085.1| hypothetical protein PSYPI_01075 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 382

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 167/374 (44%), Positives = 227/374 (60%), Gaps = 21/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +   L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALSEKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVP+N+KYPL++L+++CR Y      +R+ T EY MLK IND    A+ +I+
Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AACGQ
Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347

Query: 365 L-KSLSKRIPKVPR 377
           L   +  R  +  R
Sbjct: 348 LVGQVMDRTRRSER 361


>gi|254464850|ref|ZP_05078261.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium Y4I]
 gi|206685758|gb|EDZ46240.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium Y4I]
          Length = 413

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 191/363 (52%), Positives = 253/363 (69%), Gaps = 13/363 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R+ + E L++ G P++  +MR  QIW+WIY  G RDF  M+++++  R  L 
Sbjct: 23  KINLVGLTRDRMREVLMEHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRAQLA 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V +++S DGTRK+L+R     I G  E+E VYIPE+ RGTLC+SSQVGC+
Sbjct: 83  ETFEIRIPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT  EI+ QV++AR  L ++P              R +SNIV+M
Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIVGQVMMARDDLEEWPVP-----GAPKEETRLLSNIVLM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ ++ IA D  G+S S+RRITLSTSG VP IAR  +EIG +LAIS HA
Sbjct: 193 GMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCLLAISFHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+ R++LVPIN+++ ++ L+ A   YP  SN+ RITFEYVML G+ND+  DA  LI  
Sbjct: 253 TTNETRDVLVPINKRWNIDELLQALADYPKASNSERITFEYVMLDGVNDTDEDAHRLIDH 312

Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +K   IPAKINLIPFN WPG  Y  S    I  F+  I ++GY+SPIR  RG DI+AACG
Sbjct: 313 IKRYNIPAKINLIPFNEWPGSPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAACG 372

Query: 364 QLK 366
            L+
Sbjct: 373 -LR 374


>gi|308187773|ref|YP_003931904.1| UPF0063 protein yfgB [Pantoea vagans C9-1]
 gi|308058283|gb|ADO10455.1| UPF0063 protein yfgB [Pantoea vagans C9-1]
          Length = 389

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 163/383 (42%), Positives = 223/383 (58%), Gaps = 23/383 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E  L +G        R  Q+ KWIY     DF+ M+DI++++R+ L
Sbjct: 21  QKINLLDLNRQQMREFFLSLG----EKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ +E  S DGT KW +R   +       +ETVYIPE  R TLCVSSQVGC
Sbjct: 77  MELTEIRAPEVAEEMRSTDGTIKWAIRVGDQL------VETVYIPEGDRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKITGQRPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ LR+ +VPIN+KY +E  + A + Y G SNA   R+T EYV+L  +NDS  DA  L
Sbjct: 241 APNDKLRDDIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHEL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360

Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384
           GQL      R  +  R++M    
Sbjct: 361 GQLAGEVIDRTKRTLRKKMAGEA 383


>gi|255067157|ref|ZP_05319012.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256]
 gi|255048525|gb|EET43989.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256]
          Length = 364

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 157/377 (41%), Positives = 229/377 (60%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+      L     ++G        R  Q+ +WI+  G + F  M+D+++ +R  LN
Sbjct: 2   KTNLLNYDLNGLTHHFAEMG----EKPFRAKQVMRWIHQAGAQSFDEMTDLAKSLRLKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  S+  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQASVDVPKLMMAQESTDGTRKWLL-----DVGTGNGVETVFIPEAERGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NF+NV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFENVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML G+ND  + A  LI++
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHARELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|262280923|ref|ZP_06058706.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257823|gb|EEY76558.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           calcoaceticus RUH2202]
          Length = 411

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 169/388 (43%), Positives = 232/388 (59%), Gaps = 24/388 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+GM R ELE+    IG      + R  Q+ KW++   I DF  M++IS ++R  L
Sbjct: 29  NKVNLLGMSRTELEKFFEDIG----EKKFRAGQVMKWMHQYFITDFAEMTNISGKLREKL 84

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120
            Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +     R TLC+SS
Sbjct: 85  EQICEIKAPEVVHRHYSKDGTRKWVFRVGD---GAGSLVETVLIPAEDKTGLRKTLCISS 141

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L CSFC TG Q   R+LT +EI+ Q+ +A     +     + E        R ++
Sbjct: 142 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERE--------RSVT 193

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 253

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296
           ISLHA +++LRN LVPIN+KYPL  LI AC+ Y       S+ + +T EYVML+G+ND P
Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESSRKHVTIEYVMLEGVNDHP 313

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  +IK+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  RG 
Sbjct: 314 EHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 373

Query: 357 DILAACGQL-KSLSKRIPKVPRQEMQIT 383
           DI AACGQL   ++ R  +  + + ++T
Sbjct: 374 DIDAACGQLVGQVADRTRRAEQWQKKVT 401


>gi|332187261|ref|ZP_08389000.1| radical SAM superfamily protein [Sphingomonas sp. S17]
 gi|332012682|gb|EGI54748.1| radical SAM superfamily protein [Sphingomonas sp. S17]
          Length = 394

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 198/372 (53%), Positives = 261/372 (70%), Gaps = 16/372 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  LIG+ +++L EALL  G+  +  ++R+ QIW W+Y RG   F  M+DI++     L 
Sbjct: 23  RVDLIGLTKDQLREALLSAGMELKQAKLRSKQIWHWLYNRGAVRFADMTDIAKAQHPWLE 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V+ ++S DGTRKWLLR P        + E V+IP+  RGTLCVSSQVGC+
Sbjct: 83  ERFVIGRPEVVEAQVSSDGTRKWLLRSPD-----GQDYEMVFIPDADRGTLCVSSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC+TGT +LVRNLTA EI+ QV+LAR  LG++P   +         GR ++NIVMM
Sbjct: 138 LNCRFCHTGTMRLVRNLTAGEIVGQVMLARDSLGEWPSQPE---------GRMLTNIVMM 188

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFD V+ +L +  D  GL+ SKRRITLSTSG VP +AR GEEIGV LA+SLHA
Sbjct: 189 GMGEPLYNFDAVRDALKLVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 248

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V+ D+R+ +VP+N+KY +E L+ AC  YPG +NARRITFEYVMLK  NDS  DA  L+++
Sbjct: 249 VTKDVRDEIVPLNKKYGIEELLQACADYPGANNARRITFEYVMLKDKNDSDADAHELVRL 308

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           L+   +PAK+NLIPFNPWPG  Y CSD + I  FS+ +   G S+P+RTPRG DI AACG
Sbjct: 309 LRHYKLPAKVNLIPFNPWPGAAYECSDPERIRRFSDIVFEGGISAPVRTPRGRDIDAACG 368

Query: 364 QLKSLSKRIPKV 375
           QLK+ +++  + 
Sbjct: 369 QLKTAAEKKSRA 380


>gi|304387385|ref|ZP_07369577.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091]
 gi|304338636|gb|EFM04754.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091]
          Length = 364

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 159/377 (42%), Positives = 229/377 (60%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +W++  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQAGIEIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +  +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VTDVPCKFNLIPFNPFPNSRYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|254673132|emb|CBA07913.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|325144551|gb|EGC66850.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240013]
          Length = 364

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 158/377 (41%), Positives = 229/377 (60%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +W++  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQAGIEIPKLMMSQKSSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  D  G   S+RR+T+STSG +P + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMIPQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML GIND  + A  LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +  +P K NLIPFNP+P   Y  S  ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|307543979|ref|YP_003896458.1| hypothetical protein HELO_1390 [Halomonas elongata DSM 2581]
 gi|307216003|emb|CBV41273.1| K06941 [Halomonas elongata DSM 2581]
          Length = 378

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 165/380 (43%), Positives = 230/380 (60%), Gaps = 22/380 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ +L+GM REE+E   L IG      + R +Q+ KWI+  G  DF  M+++S+ +R  L
Sbjct: 11  QRPNLLGMTREEMEAFFLSIG----EKKFRAAQVMKWIHQEGCSDFASMTNLSKALRAQL 66

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQV 122
           ++   I  P +V E  S DGTRKW+L            +ETV IP  +  R TLCVSSQV
Sbjct: 67  SEVAEIRGPSVVYEGTSSDGTRKWVLEVED-----GSYVETVLIPADNGKRRTLCVSSQV 121

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GCSL CSFC TG Q   RNLTA EI+ QV +A +  G              +  R ++N+
Sbjct: 122 GCSLDCSFCSTGKQGFQRNLTAAEIIGQVWVASNSFGP----------RHDTANRPVTNV 171

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N+DNV  ++ +  D  G S SKRR+TLSTSG VP + R+G+E+ V LAIS
Sbjct: 172 VMMGMGEPLLNYDNVVPAMKLMLDDNGYSLSKRRVTLSTSGVVPMLDRLGDELDVSLAIS 231

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALN 301
           LHA +++LR+ LVP+NRKY +  L+DAC+ Y    +  R +T EY ++K +ND    A  
Sbjct: 232 LHAANDELRSELVPLNRKYNIRTLLDACQRYLAKCDDTRMVTIEYTLIKDVNDQQEHARQ 291

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++L+ +P+KINLIPFNP+P   Y    +  +  F + +   GY++PIR+ RG DI AA
Sbjct: 292 LAELLQELPSKINLIPFNPFPHSGYETPSRNQVKRFQQWLADLGYTAPIRSTRGDDIDAA 351

Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
           CGQL    K   +   + +Q
Sbjct: 352 CGQLVGRVKDRTRRHERYIQ 371


>gi|300724166|ref|YP_003713483.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630700|emb|CBJ91365.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
           nematophila ATCC 19061]
          Length = 392

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 159/378 (42%), Positives = 219/378 (57%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ +  + +G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 25  KINLLDLNRKQMRQFFIDMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q   I  PE+ +E+ S DGT KW +           ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 81  QVAEIKAPEVAEEQRSSDGTIKWAITVGD------QQVETVYIPEDDRATLCVSSQVGCA 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  S  R I+N+VMM
Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSSGRRPITNVVMM 184

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 185 GMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 244

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +E  +   R Y   SNA   R+T EYVML  +NDS   A  L 
Sbjct: 245 PTDDIRDEIVPINRKYNIEEFLAGVRRYLTKSNANQGRVTVEYVMLDHVNDSVEQAHQLA 304

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P+KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 305 ECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 364

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  ++ +
Sbjct: 365 QLAGDVIDRTKRTLKKRL 382


>gi|304415499|ref|ZP_07396137.1| hypothetical protein in radical SAM superfamily [Candidatus
           Regiella insecticola LSR1]
 gi|304282648|gb|EFL91173.1| hypothetical protein in radical SAM superfamily [Candidatus
           Regiella insecticola LSR1]
          Length = 378

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 163/382 (42%), Positives = 223/382 (58%), Gaps = 23/382 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R++L    +++G        R  Q+ KWIY     DF+ MSDI++ +R  L 
Sbjct: 10  KVNLLDLNRQQLRHFFIEMG----EKPFRADQVMKWIYHYCYDDFEQMSDINKVLRTKLQ 65

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q   I  PE+  E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 66  QIAEIRAPEVAQEQRSADGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGCA 119

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T  Q   RNL   EI+ QV  A  ++G           +  S  R I+N+VMM
Sbjct: 120 LECTFCSTAQQGFSRNLRVAEIIGQVWRAAKIIG----------SLKSSGRRPITNVVMM 169

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 170 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 229

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPINRKY ++  + A R Y   SNA   R+T EYVML  INDSP  A  L 
Sbjct: 230 PTDEIRDEIVPINRKYNIDTFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSPEQAHQLA 289

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ + + G+++ +R  RG DI AACG
Sbjct: 290 ECLKNTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLIQYGFTTIVRKTRGDDIDAACG 349

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  ++ +   G
Sbjct: 350 QLAGEVIDRTKRTLKKRIAKEG 371


>gi|238921042|ref|YP_002934557.1| ribosomal RNA large subunit methyltransferase N [Edwardsiella
           ictaluri 93-146]
 gi|259491987|sp|C5BET4|RLMN_EDWI9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|238870611|gb|ACR70322.1| radical SAM enzyme, Cfr family [Edwardsiella ictaluri 93-146]
          Length = 390

 Score =  458 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 160/379 (42%), Positives = 214/379 (56%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R ++ E  +++G        R  QI KWIY     DF  M+DI++ +R  L
Sbjct: 22  EKINLLDLDRRQMREFFVQMG----EKPFRADQIMKWIYHYCCDDFDAMTDINKVLRARL 77

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW L+           +ETVYIPE  R TLCVSSQVGC
Sbjct: 78  KQVAEIRAPEVAVEQRSSDGTIKWALQVGD------QRVETVYIPEDDRATLCVSSQVGC 131

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 132 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AQKVTGNRPITNVVM 181

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 182 MGMGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDTIDVALAISLH 241

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VPINRKY ++M + + R Y   SNA   R+T EYVML  IND    A  L
Sbjct: 242 APNDTIRDEIVPINRKYNIDMFLGSVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 301

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P KINLIP+NP+PG  +  S    I  FS+ +   G++  +R  RG DI AAC
Sbjct: 302 AECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 361

Query: 363 GQLKSLS-KRIPKVPRQEM 380
           GQL      R  +  +++ 
Sbjct: 362 GQLAGEVIDRTKRTLKKQA 380


>gi|138894695|ref|YP_001125148.1| ribosomal RNA large subunit methyltransferase N [Geobacillus
           thermodenitrificans NG80-2]
 gi|205829768|sp|A4IM49|RLMN_GEOTN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|134266208|gb|ABO66403.1| Radical SAM family enzyme [Geobacillus thermodenitrificans NG80-2]
          Length = 364

 Score =  458 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 201/366 (54%), Gaps = 25/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+  +  +EL+E L+  G        R +QI++W+Y + + DF  M+++ + +R  L  
Sbjct: 19  PSIYSLTLDELKEWLVAHG----EKPFRATQIYEWLYGKRVTDFAEMTNLPKRLREQLAS 74

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            FSI   + + ++ S DGT K+L             IETV +      ++CV++QVGC +
Sbjct: 75  AFSITTLKTIVKQTSKDGTIKFLFELHD-----GYSIETVLMRHNYGNSVCVTTQVGCRI 129

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L R+L A EI+ QV+  +  L +                 ++S+IV+MG
Sbjct: 130 GCTFCASTLGGLKRHLEAGEIVAQVVQVQKALDE--------------TEERVSSIVVMG 175

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEP  N+D + K L I + S GL+   R IT+STSG +P I +  +E + +  AISLHA
Sbjct: 176 IGEPFDNYDALIKFLRIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 235

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + +LR  L+PIN+ YPL  L++A R+Y   +   R+TFEY +  G+ND    A  L ++
Sbjct: 236 PTTELRTKLMPINKAYPLPKLMEAVRYYIEKTGR-RVTFEYGLFGGVNDQLEHAEQLAEL 294

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N  P   Y+ + +  I  F   +K+ G +  IR   G DI AACGQL
Sbjct: 295 LKGLKCHVNLIPVNYVPERNYVRTPRNQIFAFERALKKHGINVTIRREHGHDIDAACGQL 354

Query: 366 KSLSKR 371
           ++  ++
Sbjct: 355 RAKERK 360


>gi|270264732|ref|ZP_06192997.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
 gi|270041415|gb|EFA14514.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
          Length = 398

 Score =  458 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 160/378 (42%), Positives = 221/378 (58%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   K+G        R  Q+ KWIY     DF+ M+DI++ +R+ L 
Sbjct: 31  KINLLDLNRQQMREFFAKMG----EKPFRADQVMKWIYHYCCDDFEQMTDINKVLRNKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+ +E+ S DGT KW +           ++ETV+IP+  R TLCVSSQVGC+
Sbjct: 87  SVAEIRAPEVAEEQRSADGTIKWAITVGD------QQVETVFIPDGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ALKVTGERPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++ +R+ +VPINRKY +E  + A R Y   SNA   R+T EYVML  INDS  DA  L 
Sbjct: 251 PNDKIRDEIVPINRKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKM 388


>gi|157371847|ref|YP_001479836.1| ribosomal RNA large subunit methyltransferase N [Serratia
           proteamaculans 568]
 gi|205829876|sp|A8GHW8|RLMN_SERP5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157323611|gb|ABV42708.1| radical SAM enzyme, Cfr family [Serratia proteamaculans 568]
          Length = 398

 Score =  458 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 161/378 (42%), Positives = 222/378 (58%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R++L E   K+G        R  Q+ KW+Y     DF+ M+DI++ +R+ L 
Sbjct: 31  KINLLDLNRQQLREFFAKMG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRNKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+ +E+ S DGT KW ++          ++ETVYIP+  R TLCVSSQVGC+
Sbjct: 87  SVAEIRAPEVAEEQRSADGTIKWAIKVGD------QQVETVYIPDGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ALKVTGERPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++ +R+ +VPINRKY +E  + A R Y   SNA   R+T EYVML  INDS  DA  L 
Sbjct: 251 PNDKIRDDIVPINRKYNIETFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKM 388


>gi|196247685|ref|ZP_03146387.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16]
 gi|196212469|gb|EDY07226.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16]
          Length = 366

 Score =  458 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 201/366 (54%), Gaps = 25/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+  +  +EL+E L+  G        R +QI++W+Y + + DF  M+++ + +R  L  
Sbjct: 21  PSIYSLTLDELKEWLVAHG----EKPFRATQIYEWLYGKRVTDFAEMTNLPKRLREQLAS 76

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            FSI   + + ++ S DGT K+L             IETV +      ++CV++QVGC +
Sbjct: 77  AFSITTLKTIVKQTSKDGTIKFLFELHD-----GYSIETVLMRHNYGNSVCVTTQVGCRI 131

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L R+L A EI+ QV+  +  L +                 ++S+IV+MG
Sbjct: 132 GCTFCASTLGGLKRHLEAGEIVAQVVQVQKALDE--------------TEERVSSIVVMG 177

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEP  N+D + K L I + S GL+   R IT+STSG +P I +  +E + +  AISLHA
Sbjct: 178 IGEPFDNYDALIKFLRIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 237

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + +LR  L+PIN+ YPL  L++A R+Y   +   R+TFEY +  G+ND    A  L ++
Sbjct: 238 PTTELRTKLMPINKAYPLPKLMEAVRYYIEKTGR-RVTFEYGLFGGVNDQLEHAEQLAEL 296

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N  P   Y+ + +  I  F   +K+ G +  IR   G DI AACGQL
Sbjct: 297 LKGLKCHVNLIPVNYVPERNYVRTPRNQIFAFERALKKHGINVTIRREHGHDIDAACGQL 356

Query: 366 KSLSKR 371
           ++  ++
Sbjct: 357 RAKERK 362


>gi|52841777|ref|YP_095576.1| radical SAM protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52628888|gb|AAU27629.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 386

 Score =  458 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 171/374 (45%), Positives = 228/374 (60%), Gaps = 19/374 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+     +L E L+           R  Q+++WI+  GIRDF  M+++ + +R+ L
Sbjct: 8   QKVNLLNYNYSQLRELLIAW----DEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKL 63

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +Q   I  PEIV  + S DGT KWLL+           IETV+IPE +RGTLCVSSQVGC
Sbjct: 64  SQLACIDLPEIVACQKSADGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSSQVGC 118

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC T  Q   RNL+  EI+ QV LA   L D  G  D          +KI+N+VM
Sbjct: 119 ALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHD----------KKITNVVM 168

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  +++I  D +    SKRR+TLSTSG +P + R+ E   V LA+SLH
Sbjct: 169 MGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLH 228

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++LRN LVPIN+KYPL  LI  C+ Y      R++TFEYVMLKG+ND P  A  LIK
Sbjct: 229 APTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIK 288

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  +PAK+NLIPFNP+P  +Y  S ++ I  F + + + G ++  R  RG DI AACGQ
Sbjct: 289 LLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQ 348

Query: 365 LKSLSKRIPKVPRQ 378
           L    K      ++
Sbjct: 349 LAGEVKDKTSRSQR 362


>gi|240115903|ref|ZP_04729965.1| hypothetical protein NgonPID1_06609 [Neisseria gonorrhoeae PID18]
 gi|260440282|ref|ZP_05794098.1| hypothetical protein NgonDG_04176 [Neisseria gonorrhoeae DGI2]
 gi|268601574|ref|ZP_06135741.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291043577|ref|ZP_06569293.1| ribosomal RNA large subunit methyltransferase N [Neisseria
           gonorrhoeae DGI2]
 gi|268585705|gb|EEZ50381.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291012040|gb|EFE04029.1| ribosomal RNA large subunit methyltransferase N [Neisseria
           gonorrhoeae DGI2]
          Length = 364

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 158/377 (41%), Positives = 230/377 (61%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +W++  G ++F  M+D+++ +RH LN
Sbjct: 2   KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  SI  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQASIEIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NFDNV  +LSI  +  G   S+RR+T+STSG VP + R+ + + V LA+SLHA
Sbjct: 162 GMGEPMANFDNVVTALSIMLNDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML G+ND  + A  LI++
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S  ++I  F + ++++ +   +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRIFRDILQQAEFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|205829856|sp|Q5ZV93|RLMN_LEGPH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|307610246|emb|CBW99808.1| hypothetical protein LPW_15701 [Legionella pneumophila 130b]
          Length = 382

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 171/374 (45%), Positives = 228/374 (60%), Gaps = 19/374 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+     +L E L+           R  Q+++WI+  GIRDF  M+++ + +R+ L
Sbjct: 4   QKVNLLNYNYSQLRELLIAW----DEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +Q   I  PEIV  + S DGT KWLL+           IETV+IPE +RGTLCVSSQVGC
Sbjct: 60  SQLACIDLPEIVACQKSADGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC T  Q   RNL+  EI+ QV LA   L D  G  D          +KI+N+VM
Sbjct: 115 ALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHD----------KKITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  +++I  D +    SKRR+TLSTSG +P + R+ E   V LA+SLH
Sbjct: 165 MGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++LRN LVPIN+KYPL  LI  C+ Y      R++TFEYVMLKG+ND P  A  LIK
Sbjct: 225 APTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIK 284

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  +PAK+NLIPFNP+P  +Y  S ++ I  F + + + G ++  R  RG DI AACGQ
Sbjct: 285 LLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQ 344

Query: 365 LKSLSKRIPKVPRQ 378
           L    K      ++
Sbjct: 345 LAGEVKDKTSRSQR 358


>gi|257453867|ref|ZP_05619145.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60]
 gi|257448794|gb|EEV23759.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60]
          Length = 399

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 154/384 (40%), Positives = 223/384 (58%), Gaps = 25/384 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM + EL +    +G        R +Q+ KWIY  G+ DF  M+++S++++  L+
Sbjct: 21  KTNLLGMSKAELGQFFADLG----EKPFRATQVMKWIYQFGVTDFYQMTNLSKKLQETLD 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120
           +  ++  P +  ++ S DGTRKW+       + G   +ETV IP        R TLC+SS
Sbjct: 77  EVATVSPPTVKFKQFSEDGTRKWVFE-----VAGGSLVETVLIPADDNKQFGRKTLCISS 131

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L CSFC TG Q   R+L+  EI+ Q+ +A     +     + E         +++
Sbjct: 132 QVGCALDCSFCSTGKQGFERDLSPSEIIGQLWVANQSYMENVPVTEREN--------RVT 183

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N++ V  S+S+  D  G   SKRR+TLSTSG VP +  + ++I V LA
Sbjct: 184 NVVMMGMGEPLLNYEPVVASMSLMLDDFGFGLSKRRVTLSTSGIVPKMYELAKDIDVALA 243

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP---GLSNARRITFEYVMLKGINDSPR 297
           ISLHA +++LRN LVPIN+KYPL+ LI A + Y       + + +T EYVMLK +ND+  
Sbjct: 244 ISLHAPNDELRNELVPINKKYPLKELIAAAKSYVYDENPRHKKHVTIEYVMLKDVNDTDE 303

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L+ +LK +P KINLIPFNP+P   Y  S    I  FS  + ++G+   IR  RG D
Sbjct: 304 HARQLVNLLKDLPCKINLIPFNPFPHAPYGRSSNNRIHAFSNILNQAGFVCTIRQTRGDD 363

Query: 358 ILAACGQLKSLSKRIPKVPRQEMQ 381
           I AACGQL        +  +Q  +
Sbjct: 364 IDAACGQLVGQVTDKTRRAKQWQE 387


>gi|85712740|ref|ZP_01043785.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145]
 gi|85693472|gb|EAQ31425.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145]
          Length = 378

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 159/385 (41%), Positives = 226/385 (58%), Gaps = 26/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ ++    ++G        R  Q+ KW+Y   + DF  M+++++ +R  L
Sbjct: 7   KKVNLLNLNRDGMKAFFKEMG----EKPFRADQVMKWLYHFCVDDFDEMTNLNKGLREKL 62

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PEI +++ S DGT K+++           ++ETV+IPE+ R TLCVSSQVGC
Sbjct: 63  KQCAEIRAPEIREQQQSSDGTIKFVMTLFD-----GQDVETVWIPERDRATLCVSSQVGC 117

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG Q   RNL   EI+ QV     LLG              +  + ++N+VM
Sbjct: 118 ALECTFCSTGQQGFNRNLNVAEIIGQVWRVNQLLG----------AYGKTGIKPVTNVVM 167

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ +  D  G   SKRR+TLSTSG VP + ++ E+I VMLAISLH
Sbjct: 168 MGMGEPLLNLNNVVPAMDLMMDDYGFGLSKRRVTLSTSGVVPALDKLREQIDVMLAISLH 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-ARRITFEYVMLKGINDSPRDALNLI 303
           A +++LRN +VPIN+KY +E  + + R Y   S    ++T EYVML  +NDS   A  L 
Sbjct: 228 APNDELRNEIVPINKKYNIEQFLASSRKYVEQSKAQHKVTVEYVMLDHVNDSMDQAHELA 287

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P+KINLIPFNP+PG +Y  S    I  F++ +   G++  +R  RG DI AACG
Sbjct: 288 RTLKDTPSKINLIPFNPFPGSDYGRSSNSRIDRFAKVLMDYGFTVMVRKTRGDDIDAACG 347

Query: 364 QLKS----LSKRIPKVPRQEMQITG 384
           QL       +KRI K  RQ+ Q  G
Sbjct: 348 QLVGDVIDRTKRILK--RQQAQRGG 370


>gi|291327220|ref|ZP_06127407.2| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
 gi|291311232|gb|EFE51685.1| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
          Length = 426

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 157/379 (41%), Positives = 220/379 (58%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E   ++G        R  Q+ KWIY     DF  M+DI++ +R  L
Sbjct: 58  QKTNLLDLNRKQMREFFAQMG----EKPFRADQVMKWIYHYCYDDFDQMTDINKVLRAKL 113

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ DE+ S DGT KW ++   +       +ETVYIPE  R TLCVSSQVGC
Sbjct: 114 KEVAEIRAPEVADEQRSSDGTIKWAIKVGDQL------VETVYIPEADRATLCVSSQVGC 167

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G           +  S  R I+N+VM
Sbjct: 168 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSSGRRPITNVVM 217

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+T+STSG VP + ++G+ I V LAISLH
Sbjct: 218 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLH 277

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+R+ +VPIN+KY +E  +++   Y   SNA   R+T EYVML  +NDS   A  L
Sbjct: 278 APTDDIRDDIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHVNDSVEQAHQL 337

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + LK  P+KINLIP+NP+PG  Y  S    I  F + +   G+++ +R  RG DI AAC
Sbjct: 338 AECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFCKVLMGYGFTTIVRKTRGDDIDAAC 397

Query: 363 GQLKSLS-KRIPKVPRQEM 380
           GQL      R  +  ++ +
Sbjct: 398 GQLAGDVIDRTKRTLKKRL 416


>gi|293394872|ref|ZP_06639162.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
 gi|291422623|gb|EFE95862.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
          Length = 398

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 160/378 (42%), Positives = 221/378 (58%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R++L E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R+ L 
Sbjct: 31  KINLLDLNRQQLREFFAELG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRNKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+ +E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  SIAEIRAPEVAEEQRSADGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AQKVTGQRPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++ +R+ +VPINRKY +E  + + R Y   SNA   R+T EYVML  INDS  DA  L 
Sbjct: 251 PNDTIRDEIVPINRKYNIETFLSSVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKM 388


>gi|296116218|ref|ZP_06834836.1| radical SAM enzyme, Cfr family protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977324|gb|EFG84084.1| radical SAM enzyme, Cfr family protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 410

 Score =  458 bits (1178), Expect = e-127,   Method: Composition-based stats.
 Identities = 186/373 (49%), Positives = 252/373 (67%), Gaps = 18/373 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ REEL E LL+IG        RT Q+W WIY +G  DF  MS I++ ++  L 
Sbjct: 47  RRELVGLSREELTEILLEIG----EKPFRTKQLWHWIYHQGATDFSCMSSIAKPLQEKLA 102

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123
           + F I  P+    + S D TRK+L RF         E ETVYIP++   RG +C+SSQVG
Sbjct: 103 ERFVISRPQAATVQTSSDETRKFLFRFRD-----GQEAETVYIPDRREDRGAVCISSQVG 157

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C+FC+TGTQ LVRNL A EI+ Q + AR   G++P              R +S IV
Sbjct: 158 CTLSCTFCHTGTQGLVRNLGAAEIVGQFMAARDSYGEWPSPRG-------ETPRLLSTIV 210

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++N+ K++ I  D  G+  S+RRITLSTSG +P + + G+E+G+ LAISL
Sbjct: 211 LMGMGEPLYNYENIAKAMKIIMDGEGIGLSRRRITLSTSGVIPMMDQCGDELGINLAISL 270

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV +DLR+ LVP+NRKYP+  LI ACR YP  SNARRITFEY+ML+G+NDS  DA  L+
Sbjct: 271 HAVRDDLRDELVPLNRKYPIADLIAACRRYPAASNARRITFEYIMLRGVNDSEADARELV 330

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG  +  S ++ +  F+  +  +G++SPIR PRG DILAACG
Sbjct: 331 RLIAGIPAKVNLIPFNPWPGSRFQPSTREQLDRFANIVMDAGFASPIRMPRGRDILAACG 390

Query: 364 QLKSLSKRIPKVP 376
           QL++ S+R  + P
Sbjct: 391 QLRTESQRARRQP 403


>gi|330994687|ref|ZP_08318610.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter
           sp. SXCC-1]
 gi|329758328|gb|EGG74849.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter
           sp. SXCC-1]
          Length = 412

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 186/374 (49%), Positives = 255/374 (68%), Gaps = 18/374 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ REEL + +++IG        RT Q+W WIY +G  DF  MS I++ ++  L 
Sbjct: 46  RRDLVGLSREELTDIMVEIG----EKPFRTKQLWHWIYHQGATDFSRMSSIARPLQEKLA 101

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123
           + F +  P +V E+ S D TRK+L RF         E ETVYIP++   RG +C+SSQVG
Sbjct: 102 ERFVVGRPGVVTEQTSQDSTRKFLFRFRD-----GQEAETVYIPDRQEDRGAVCISSQVG 156

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C+FC+TGTQ LVRNL A EI+ Q + AR   G++P  +           R +S IV
Sbjct: 157 CTLSCTFCHTGTQALVRNLGAAEIVGQFMAARDSYGEWPSPKG-------DTPRLLSTIV 209

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N+DNV K++ I  D  G+  S+RRITLSTSG VP + + G E+G+ LA+SL
Sbjct: 210 LMGMGEPLYNYDNVAKAMRIIMDGEGIGLSRRRITLSTSGVVPMMDQCGAELGINLAVSL 269

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV +DLR+ +VP+NRKYP+  +I ACR YP  SNARRITFEY+ML+GINDS  DA  L+
Sbjct: 270 HAVRDDLRDEIVPLNRKYPIRDVIAACRRYPAASNARRITFEYIMLRGINDSEADARELV 329

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG  Y  S ++ +  F+  +  +G++SPIR PRG DILAACG
Sbjct: 330 RLISGIPAKVNLIPFNPWPGSSYRPSTREQLERFANIVMDAGFASPIRMPRGRDILAACG 389

Query: 364 QLKSLSKRIPKVPR 377
           QL++ S+R+ +  R
Sbjct: 390 QLRTESQRLRRASR 403


>gi|255321140|ref|ZP_05362306.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
 gi|262380171|ref|ZP_06073326.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           radioresistens SH164]
 gi|255301694|gb|EET80945.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
 gi|262298365|gb|EEY86279.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           radioresistens SH164]
          Length = 411

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 168/397 (42%), Positives = 229/397 (57%), Gaps = 32/397 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           LKK +L+GM R ELE    K+G      + R  Q+ KW++   + DF  M++IS ++R  
Sbjct: 28  LKKVNLLGMSRAELENFFEKLG----EKKFRAGQVMKWMHQYFVTDFAEMTNISGKLRAK 83

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVS 119
           L Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +     R TLC+S
Sbjct: 84  LEQLCEIKAPEVVHRHYSKDGTRKWVFRVGD---GAGSLVETVLIPAEDKTGLRKTLCIS 140

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC+L CSFC TG Q   R+LT +EI+ Q+ +A     +         + +    R +
Sbjct: 141 SQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWVANQSYME--------DVPVAERTRSV 192

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V L
Sbjct: 193 TNVVMMGMGEPLLNYDAVLSSMYIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVAL 252

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDS 295
           AISLHA +++LRN LVPIN+KYPL  LI AC+ Y       S  + +T EYVML G+NDS
Sbjct: 253 AISLHAPNDELRNELVPINKKYPLAQLIAACQRYINKDGNESARKHVTIEYVMLDGVNDS 312

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
              A  +I++LK +P+KINLIPFNP+P   Y  S +  I+ F + +  +G+   IR  RG
Sbjct: 313 LEHAQQMIRLLKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKALSDAGFVCTIRQTRG 372

Query: 356 LDILAACGQL---------KSLSKRIPKVPRQEMQIT 383
            DI AACGQL         ++   +     R E+  +
Sbjct: 373 DDIDAACGQLVGQVADRTRRAEQWKKKVAERNEIMRS 409


>gi|148555870|ref|YP_001263452.1| radical SAM protein [Sphingomonas wittichii RW1]
 gi|205829890|sp|A5VAJ8|RLMN_SPHWW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|148501060|gb|ABQ69314.1| radical SAM enzyme, Cfr family [Sphingomonas wittichii RW1]
          Length = 402

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 197/380 (51%), Positives = 264/380 (69%), Gaps = 16/380 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ R++L  AL    +  R  ++R  Q+W WIY RG  DF  M+DI++++R  L+
Sbjct: 31  RIDLLGLSRDDLRMALETAQLEPRQAKLRAKQLWHWIYNRGATDFAVMTDIAKDMRGWLD 90

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q F +  PE+V+ ++S DGTRKWLLR          + E V+IP+  RGTLCVSSQVGC+
Sbjct: 91  QRFVVSRPEVVEAQVSTDGTRKWLLR-----SDDGQDYEMVFIPDADRGTLCVSSQVGCT 145

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC+TGT KLVRNLT  EI+ QV+LAR  LG++P   +         GR ++NIVMM
Sbjct: 146 LNCRFCHTGTMKLVRNLTPAEIVGQVMLARDALGEWPSQPE---------GRMLTNIVMM 196

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ +L +  D  GL+ SKRRITLST+G VP +AR GEEIGV LA+SLHA
Sbjct: 197 GMGEPLYNFDNVRDALKLVMDGDGLALSKRRITLSTAGVVPMMARAGEEIGVNLAVSLHA 256

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           ++ ++R+ +VP+NRKY +E L+ AC  YPG +NARRITFEYVMLK  ND   DAL L+++
Sbjct: 257 ITKEVRDEIVPLNRKYGIEDLLQACADYPGANNARRITFEYVMLKDKNDRDEDALELVRL 316

Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++   +PAK+NLIPFNPWPG  Y CSD   +  FS+ I ++G S+P+RTPRG DI+AACG
Sbjct: 317 IRKYRLPAKVNLIPFNPWPGAPYECSDPDRVARFSDLIFKAGISAPVRTPRGRDIMAACG 376

Query: 364 QLKSLSKRIPKVPRQEMQIT 383
           QLKS +++  +     M   
Sbjct: 377 QLKSAAEKKSRAELDRMAAE 396


>gi|304311805|ref|YP_003811403.1| hypothetical protein HDN1F_21750 [gamma proteobacterium HdN1]
 gi|301797538|emb|CBL45758.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 410

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 166/378 (43%), Positives = 229/378 (60%), Gaps = 20/378 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM R ELE+  + +G        R  Q+ KWI+  G+ DF  M+++S+++R  L
Sbjct: 6   EKANLLGMTRRELEDFFVSLG----EKPFRAHQVMKWIHFFGVDDFDQMTNVSRDLREKL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  P I  E IS DGTRKW++R           +ETV+IP+ +RGTLCVSSQVGC
Sbjct: 62  KAVAVIPAPAISYENISKDGTRKWVIRL-----DNGNAVETVFIPDGNRGTLCVSSQVGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q   R+LTA EI+ Q+ +A    G          +      R I+N+VM
Sbjct: 117 SLDCSFCSTGKQGFQRDLTAAEIIAQLWVANRSFG----------VPDNKGHRNITNVVM 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N DNV  ++ I  D +G   +++R+TLSTSG VP +  + + I V LA+SLH
Sbjct: 167 MGMGEPLLNLDNVVSAMEIMKDDLGYGVARKRVTLSTSGVVPKMYELFDRIDVSLAVSLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-ARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR+ L+PINRKYPL  L+ ACR+Y    N  RR+T EYV+L GIND+   A  L+
Sbjct: 227 APNDTLRDELMPINRKYPLAELLKACRYYVDKYNDGRRVTMEYVLLDGINDTFAHAAELV 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L+ +P+KINLIPFNP+P   Y   +   +  F E + ++ Y + IRT RG DI AACG
Sbjct: 287 ELLRDVPSKINLIPFNPFPHAPYKRPNGYRVKAFQEVLLKADYVTTIRTTRGDDIDAACG 346

Query: 364 QLKSLSKRIPKVPRQEMQ 381
           QL    +   +   Q  Q
Sbjct: 347 QLVGQVQDRTRRQAQWSQ 364


>gi|318606744|emb|CBY28242.1| ribosomal RNA large subunit methyltransferase N [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 397

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 158/378 (41%), Positives = 219/378 (57%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 30  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCFDDFEQMTDINKVLRAKLQ 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DG  KW ++          ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 86  RVAEIRAPEVAEEQRSTDGAIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGCA 139

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I+N+VMM
Sbjct: 140 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 189

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 190 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 249

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +E  + A R Y   SN    R+T EYVML  INDS   A  L 
Sbjct: 250 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 309

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 310 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 369

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 370 QLAGEVIDRTKRTLKKKM 387


>gi|239826567|ref|YP_002949191.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp.
           WCH70]
 gi|239806860|gb|ACS23925.1| radical SAM enzyme, Cfr family [Geobacillus sp. WCH70]
          Length = 364

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 204/366 (55%), Gaps = 25/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+  +  E+L++ +++ G        R +QI++W+Y +   DF  M+++ + +R  L++
Sbjct: 19  PSIYSLTFEQLKDWIIEQG----EKPFRATQIYEWLYQKRATDFSEMTNLPKTLREKLSE 74

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           HF I   + + ++ S DGT K+L             IETV +      ++CV++QVGC +
Sbjct: 75  HFDITTLKTLVKQTSKDGTIKFLFELHD-----GYSIETVLMRHNYGNSICVTTQVGCRI 129

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L R+L A EI+ QV+  +  L +               G ++S+IV+MG
Sbjct: 130 GCTFCASTLGGLKRHLEAGEIVAQVVKVQKALDE--------------QGERVSSIVVMG 175

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEP  N+D + K L I + S GL+   R IT+STSG +P I +  +E + V  AISLHA
Sbjct: 176 IGEPFDNYDELIKFLKIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQVNFAISLHA 235

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + +LR  L+PIN+ YPL  L+DA R+Y   +   R+TFEY +  G+ND    A  L ++
Sbjct: 236 PTTELRTKLMPINKAYPLPKLMDAVRYYIEKTGR-RVTFEYGLFGGVNDQIEHAEQLAEL 294

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KG+   +NLIP N  P   Y+ + +  I  F   +K+ G +  IR   G DI AACGQL
Sbjct: 295 IKGLKCHVNLIPVNYVPERNYVRTPRDQIFAFERALKKHGINVTIRREHGHDIDAACGQL 354

Query: 366 KSLSKR 371
           ++  ++
Sbjct: 355 RAKERK 360


>gi|54297459|ref|YP_123828.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
 gi|81370554|sp|Q5X516|RLMN_LEGPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|53751244|emb|CAH12655.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
          Length = 382

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 170/374 (45%), Positives = 227/374 (60%), Gaps = 19/374 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+     +L E L+           R  Q+++WI+  GI DF  M+++ + +R+ L
Sbjct: 4   QKVNLLNYNYSQLRELLIAW----DEKPFRAQQLFQWIHQVGICDFAQMTNLGKVLRNKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +Q   I  PEIV  + S DGT KWLL+           IETV+IPE +RGTLCVSSQVGC
Sbjct: 60  SQLACIDLPEIVACQKSADGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC T  Q   RNL+  EI+ QV LA   L D  G  D          +KI+N+VM
Sbjct: 115 ALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHD----------KKITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  +++I  D +    SKRR+TLSTSG +P + R+ E   V LA+SLH
Sbjct: 165 MGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++LRN LVPIN+KYPL  LI  C+ Y      R++TFEYVMLKG+ND P  A  LIK
Sbjct: 225 APTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIK 284

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  +PAK+NLIPFNP+P  +Y  S ++ I  F + + + G ++  R  RG DI AACGQ
Sbjct: 285 LLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQ 344

Query: 365 LKSLSKRIPKVPRQ 378
           L    K      ++
Sbjct: 345 LAGEVKDKTSRSQR 358


>gi|238758832|ref|ZP_04620005.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae
           ATCC 35236]
 gi|238702940|gb|EEP95484.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae
           ATCC 35236]
          Length = 398

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/378 (42%), Positives = 219/378 (57%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 31  KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCFDDFEQMTDINKGLRTKLQ 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 87  RVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           V  +  R I+N+VMM
Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AVKATGIRPITNVVMM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +E  + A R Y   S  N  R+T EYVML  INDS   A  L 
Sbjct: 251 PTDDIRDDIVPINRKYNIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
             LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG DI AACG
Sbjct: 311 ACLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  +++M
Sbjct: 371 QLAGEVIDRTKRTLKKKM 388


>gi|15603872|ref|NP_246946.1| hypothetical protein PM2007 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|81636369|sp|Q9CJJ8|RLMN_PASMU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|12722449|gb|AAK04091.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 394

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 159/383 (41%), Positives = 221/383 (57%), Gaps = 22/383 (5%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           +  KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R
Sbjct: 23  DQAKKINLMNLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLR 78

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L Q   I  PE+  E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQ
Sbjct: 79  DKLKQVAEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQ 132

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N
Sbjct: 133 VGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITN 182

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP + ++ E I V LAI
Sbjct: 183 VVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAI 242

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA +++LR+ +VPIN+KY ++ML+D+   Y  +SNA   ++T EYVML  +ND    A
Sbjct: 243 SLHAPNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHA 302

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++LK  P KINLIP+NP+P   Y  S    I  F + +   G++  +R  RG DI 
Sbjct: 303 HQLAQVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDID 362

Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382
           AACGQL        K   Q+ Q 
Sbjct: 363 AACGQLAGDVIDRTKRTAQKKQF 385


>gi|262374935|ref|ZP_06068169.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           lwoffii SH145]
 gi|262309948|gb|EEY91077.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           lwoffii SH145]
          Length = 411

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 167/392 (42%), Positives = 233/392 (59%), Gaps = 27/392 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N ++K +L+GM R ++E+    +G      + R  Q+ KWI+   + DF  M++IS ++R
Sbjct: 26  NTVEKVNLLGMSRPQMEKFFEDMG----EKKFRAGQVMKWIHQFFVTDFAEMTNISGKLR 81

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG----TLC 117
             L +   I  PE+V +  S DGTRKW+ R      G    +ETV IP + R     TLC
Sbjct: 82  EKLEKICEIKAPEVVHKNYSKDGTRKWVFRVGD---GEGSLVETVLIPAEHRSGLRRTLC 138

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +SSQVGC+L CSFC TG Q   R+LT  EI+ Q+ +A     +     + E        R
Sbjct: 139 ISSQVGCALDCSFCSTGKQGFQRDLTQAEIIGQLWMANYSYMEDVPVLERE--------R 190

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            ++N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V
Sbjct: 191 SVTNVVMMGMGEPLLNYDAVLNSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQMVKDIDV 250

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGIN 293
            LAISLHA +++LRN LVPIN+KYPLE LI AC+ Y       S+ + +T EYVML G+N
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLEQLIAACQRYIAKDGNESSRKHVTIEYVMLDGVN 310

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D P  A  +IK+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  
Sbjct: 311 DHPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQT 370

Query: 354 RGLDILAACGQL----KSLSKRIPKVPRQEMQ 381
           RG DI AACGQL       ++R  +  ++  Q
Sbjct: 371 RGDDIDAACGQLVGQVADRTRRAEQWKKKIAQ 402


>gi|260752519|ref|YP_003225412.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551882|gb|ACV74828.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 391

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 190/372 (51%), Positives = 259/372 (69%), Gaps = 16/372 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ RE++  AL   G+ ++  ++RT Q+W W+Y RG   F GM+DI++ +R  L 
Sbjct: 27  RIDLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF+I  PE+V  +IS DGTRKWLL+          + E V+IP+  RGTLC+SSQ+GC+
Sbjct: 87  EHFAISRPEVVTMQISTDGTRKWLLKT-----DDGYDYEMVFIPDADRGTLCISSQIGCT 141

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC TGT +LVRNLT  EI+ Q++LAR  L ++P   +         GR ++N+VMM
Sbjct: 142 LNCRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPSKPE---------GRLLTNVVMM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ +L +  D  G++ S+RRITLSTSG VP +AR GEEIGV LA+SLHA
Sbjct: 193 GMGEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V+  +R+ +VPIN+KY ++ L+ AC  YPG++NARRITFEYVMLK  NDS  DA  L+++
Sbjct: 253 VTKAVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRL 312

Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           L+   +PAK+NLIPFNPWP   Y CS  + I  FSE +  +G S+P+R  RG DI+AACG
Sbjct: 313 LQYYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACG 372

Query: 364 QLKSLSKRIPKV 375
           QLKS ++R  K 
Sbjct: 373 QLKSAAERQSKR 384


>gi|56461137|ref|YP_156418.1| ribosomal RNA large subunit methyltransferase N [Idiomarina
           loihiensis L2TR]
 gi|81363032|sp|Q5QYC0|RLMN_IDILO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|56180147|gb|AAV82869.1| Predicted Fe-S-cluster redox enzyme [Idiomarina loihiensis L2TR]
          Length = 378

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 163/385 (42%), Positives = 226/385 (58%), Gaps = 26/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + RE ++E   ++G        R  Q+ KW+Y   + DF  M+++++ +R  L
Sbjct: 7   KKVNLLDLNREGIKEFFREMG----EKPFRAEQVMKWLYHFCVDDFDEMTNLNKALREKL 62

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+ +++ S DGT K+ +           ++ETV+IPE  R TLCVSSQVGC
Sbjct: 63  KQVAEIRAPEVREQQQSSDGTIKFAMTLFD-----GQDVETVWIPEGDRATLCVSSQVGC 117

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG Q   RNL+  EI+ QV     LLG              +  + ++N+VM
Sbjct: 118 ALECTFCSTGAQGFNRNLSVAEIIGQVWRVNQLLG----------AYGKTGIKPVTNVVM 167

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ +  D +G   SKRR+TLSTSG VP + ++ E I VMLAISLH
Sbjct: 168 MGMGEPLLNLNNVVPAMELMLDDLGFGLSKRRVTLSTSGVVPALEKLRERIDVMLAISLH 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303
           A  ++LRN +VPIN+KY +E  + + R Y   S A+R +T EYVML  +NDS   A  L 
Sbjct: 228 APDDELRNEIVPINKKYNIEEFLASSRRYVEQSKAQRKVTVEYVMLDHVNDSTDQAHALA 287

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K LK  P+KINLIPFNP+PG +Y  S    I  F++ +   G +  +R  RG DI AACG
Sbjct: 288 KTLKDTPSKINLIPFNPFPGSDYGRSSNSRIDRFAKVLMEYGLTVMVRKTRGDDIDAACG 347

Query: 364 QLKS----LSKRIPKVPRQEMQITG 384
           QL       +KRI K  RQ+ Q  G
Sbjct: 348 QLVGDVIDRTKRILK--RQQKQRGG 370


>gi|241761759|ref|ZP_04759845.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373673|gb|EER63233.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 391

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 190/372 (51%), Positives = 259/372 (69%), Gaps = 16/372 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ RE++  AL   G+ ++  ++RT Q+W W+Y RG   F GM+DI++ +R  L 
Sbjct: 27  RIDLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF+I  PE+V  +IS DGTRKWLL+          + E V+IP+  RGTLC+SSQ+GC+
Sbjct: 87  EHFAISRPEVVTMQISTDGTRKWLLKT-----DDGYDYEMVFIPDADRGTLCISSQIGCT 141

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC TGT +LVRNLT  EI+ Q++LAR  L ++P   +         GR ++N+VMM
Sbjct: 142 LNCRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPSKPE---------GRLLTNVVMM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ +L +  D  G++ S+RRITLSTSG VP +AR GEEIGV LA+SLHA
Sbjct: 193 GMGEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V+  +R+ +VPIN+KY ++ L+ AC  YPG++NARRITFEYVMLK  NDS  DA  L+++
Sbjct: 253 VTKAVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRL 312

Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           L+   +PAK+NLIPFNPWP   Y CS  + I  FSE +  +G S+P+R  RG DI+AACG
Sbjct: 313 LQYYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACG 372

Query: 364 QLKSLSKRIPKV 375
           QLKS ++R  K 
Sbjct: 373 QLKSAAERQSKR 384


>gi|148359081|ref|YP_001250288.1| Cfr family transporter radical SAM protein [Legionella pneumophila
           str. Corby]
 gi|296107129|ref|YP_003618829.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99
           Alcoy]
 gi|205829782|sp|A5IC42|RLMN_LEGPC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|148280854|gb|ABQ54942.1| radical SAM enzyme, Cfr family [Legionella pneumophila str. Corby]
 gi|295649030|gb|ADG24877.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99
           Alcoy]
          Length = 382

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 172/374 (45%), Positives = 228/374 (60%), Gaps = 19/374 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+     +L E L+           R  Q+++WI+  GIRDF  M+++ + +R+ L
Sbjct: 4   QKVNLLNYNYSQLRELLMAW----DEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +Q   I  PEIV  + S DGT KWLL+           IETV+IPE +RGTLCVSSQVGC
Sbjct: 60  SQLACIDLPEIVACQKSADGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC T  Q   RNL+  EI+ QV LA   L D  G  D          +KI+N+VM
Sbjct: 115 ALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGAHD----------KKITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++SI  D +    SKRR+TLSTSG +P + R+ E   V LA+SLH
Sbjct: 165 MGMGEPLLNFDNVVSAMSIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++LRN LVPIN+KYPL  LI  C+ Y      R++TFEYVMLKG+ND P  A  LIK
Sbjct: 225 APTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIK 284

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  +PAK+NLIPFNP+P  +Y  S ++ I  F + + + G ++  R  RG DI AACGQ
Sbjct: 285 LLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLIKHGINTITRKTRGDDIDAACGQ 344

Query: 365 LKSLSKRIPKVPRQ 378
           L    K      ++
Sbjct: 345 LAGEVKDKTTRSQR 358


>gi|209521129|ref|ZP_03269857.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160]
 gi|209498439|gb|EDZ98566.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160]
          Length = 383

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/384 (39%), Positives = 219/384 (57%), Gaps = 10/384 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+ +  + L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSSPSVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    +I  P +V + IS DGTRKWL+      +G    +ETVYIPE++RGTLCVSS
Sbjct: 57  REKLKGRATITMPGVVSDHISSDGTRKWLI-----DVGNGNAVETVYIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
           Q GC++ C FC TG Q   RNLT  EI+ Q+ +A   L    G      M     G ++ 
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASRGDAGGRAMGGDGKGERVV 171

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA ++ LR+ LVP+N+KYPL  L+ AC  Y  ++    ITFEY ML G+NDS   A
Sbjct: 232 AVSLHAPNDALRDELVPLNKKYPLRELMAACERYLKVAPRDFITFEYCMLDGVNDSEAHA 291

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+ + + +P K NLIPFNP+P    + S Q+ I  F++ +  +G  + +R  RG DI 
Sbjct: 292 RQLLAVTRDVPCKFNLIPFNPFPESGLIRSKQEQIKRFAQVLIDAGVVTTVRKTRGDDID 351

Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
           AACGQL    K   ++  +  +  
Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375


>gi|194290009|ref|YP_002005916.1| hypothetical protein RALTA_A1912 [Cupriavidus taiwanensis LMG
           19424]
 gi|193223844|emb|CAQ69853.1| Conserved hypothetical protein; radical SAM enzyme, Cfr family
           domain; putative iron binding enzyme [Cupriavidus
           taiwanensis LMG 19424]
          Length = 384

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 153/378 (40%), Positives = 219/378 (57%), Gaps = 18/378 (4%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN L   +L+ +  + L     ++G        R  Q+ +WI+  G   F  MSD+++ +
Sbjct: 1   MNDL--VNLLDLDADALTAYCGELG----EKPFRARQLQRWIHHYGASRFDAMSDLAKSL 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L     I  P ++ + +S DGTRKWLL      +G    +ETVYIPE++RGTLCVSS
Sbjct: 55  REKLATRAEIRAPAVITDNLSADGTRKWLL-----DVGEGNAVETVYIPEETRGTLCVSS 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   + +  G         P   R IS
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMREQLGR-------GPKDDRVIS 162

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+ +++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALA 222

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR++LVP+N+KYPL  L+ ACR Y   +    ITFEY ML G+ND    A 
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+K++  +P K NLIPFNP+P      S+ + I  F++ +  +G  + IR  RG DI A
Sbjct: 283 ELLKLVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFAQVLMDAGVVTTIRKTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 343 ACGQLAGEVKDRTRLAER 360


>gi|330830071|ref|YP_004393023.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
           B565]
 gi|328805207|gb|AEB50406.1| Ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
           B565]
          Length = 367

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 157/382 (41%), Positives = 213/382 (55%), Gaps = 28/382 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+ +    +++G        R  Q+ KWIY  G  DF  M+++++ ++  L 
Sbjct: 5   KINLLDLDRDAMRAFFVELG----EKPFRADQVMKWIYHFGCDDFDQMTNVNKVLKERLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PEI  E+ S DGT KW L+          E+ETVYIPE  R TLCVSSQVGC+
Sbjct: 61  AIAEIKAPEISREQRSADGTIKWALQVGD------QEVETVYIPEDDRATLCVSSQVGCA 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G                 R I+N+VMM
Sbjct: 115 LECKFCSTAQQGFNRNLKVSEIIGQVWRAARVVG---------------GKRPITNVVMM 159

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ +  D  G   SKRR+T+STSG VP + ++G++I V LAISLHA
Sbjct: 160 GMGEPLLNLANVVPAMRLMMDDYGFGISKRRVTISTSGVVPALDKLGDQIDVALAISLHA 219

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
            ++ LR+ ++PIN KY +E  +   R Y   SN    R+T EYV+L  IND  + A  L 
Sbjct: 220 PNDKLRSEIMPINDKYNIEEFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELA 279

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LK  P+KINLIPFNP+PG  Y       I  FS+ +   G++  +R  RG DI AACG
Sbjct: 280 KVLKDTPSKINLIPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACG 339

Query: 364 QL-KSLSKRIPKVPRQEMQITG 384
           QL   +  R  +  +  MQ  G
Sbjct: 340 QLVGDVIDRTKRTIKNRMQQDG 361


>gi|329848315|ref|ZP_08263343.1| radical SAM superfamily protein [Asticcacaulis biprosthecum C19]
 gi|328843378|gb|EGF92947.1| radical SAM superfamily protein [Asticcacaulis biprosthecum C19]
          Length = 405

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 207/378 (54%), Positives = 271/378 (71%), Gaps = 17/378 (4%)

Query: 7   ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
            ++ G+ R+ L  ALL+ G+  +R  +MR  QIW+WI+  G+ DF  M+DI+++ R L  
Sbjct: 18  VNITGLTRDGLVRALLESGVVEERKAKMRMQQIWRWIHHYGVTDFDLMTDIAKDQRALFA 77

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
             F++  PEIV+ +IS DGTRK+L+R      G  +E+E+V+IP   R G LCVSSQVGC
Sbjct: 78  DRFTLARPEIVERQISRDGTRKYLIRM-----GPGIEVESVFIPSVGRAGALCVSSQVGC 132

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQKLVRNLTA EI+ QV +AR  LG++P          P   R++SNIV 
Sbjct: 133 TLNCTFCHTGTQKLVRNLTAAEIVAQVQVARDDLGEWPS---------PKEDRQLSNIVF 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N DNV  ++ I SD+ G++ S+RRIT+STSG VP +  +G     MLAISLH
Sbjct: 184 MGMGEPLYNLDNVADAIDIISDNEGIALSRRRITVSTSGVVPELEALGNRTAAMLAISLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR+ +VP+N+KY +E L+   R YPGLSNARR+TFEYVMLKG+NDSP +A  LIK
Sbjct: 244 ATNDTLRDEIVPLNKKYNIEALMAGIRAYPGLSNARRVTFEYVMLKGVNDSPAEARALIK 303

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGIPAKINLIPFNPWPG +Y CSD   I TF+  + ++GY+SPIRTPRG DILAACGQ
Sbjct: 304 LLKGIPAKINLIPFNPWPGTDYQCSDWTAIETFAAILNKAGYASPIRTPRGRDILAACGQ 363

Query: 365 LKSLSKRIPK-VPRQEMQ 381
           LKS S++    V R+E Q
Sbjct: 364 LKSDSEKKRASVLRREAQ 381


>gi|260913157|ref|ZP_05919639.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325]
 gi|260632744|gb|EEX50913.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325]
          Length = 391

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 161/380 (42%), Positives = 221/380 (58%), Gaps = 22/380 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  DF  M++I++++R  L
Sbjct: 23  KKINLMNLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDDFDNMTNINKKLRDKL 78

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC
Sbjct: 79  KQVAEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQVGC 132

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 133 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 182

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP + ++ E I V LAISLH
Sbjct: 183 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLH 242

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +NDS   A  L
Sbjct: 243 APNDELRDEIVPINKKYNIKALIDSVNRYLSVSNANHGKVTIEYVMLDHVNDSVEHAHQL 302

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P+KINLIP+NP+P   Y  S    I  F + +   G++  +R  RG DI AAC
Sbjct: 303 AQVLKNTPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIVRKTRGDDIDAAC 362

Query: 363 GQLKSLSKRIPKVPRQEMQI 382
           GQL        K   Q+ Q 
Sbjct: 363 GQLAGDVIDRTKRTAQKKQF 382


>gi|253999428|ref|YP_003051491.1| radical SAM enzyme, Cfr family [Methylovorus sp. SIP3-4]
 gi|253986107|gb|ACT50964.1| radical SAM enzyme, Cfr family [Methylovorus sp. SIP3-4]
          Length = 367

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 159/376 (42%), Positives = 219/376 (58%), Gaps = 21/376 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+   + +L E    +G        R  Q+ +W++  G+ DF  M+DI++ +R  L  
Sbjct: 3   VNLLNYSQPQLAEYFHGLG----EKPFRAKQLMRWMHHFGVHDFDQMTDIAKSLRDKLKD 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P I  E+IS DGTRKWL+       G    +ETV+IPE  RGTLCVSSQVGC+L
Sbjct: 59  QAEITPPGIKLEQISEDGTRKWLI-----DAGTGNGVETVFIPEAERGTLCVSSQVGCAL 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG Q   RNLT  EI+ Q+ +A   LG             P   R ISN+VMMG
Sbjct: 114 ECTFCSTGRQGFNRNLTVSEIIGQLWVANKALG-----------RDPKGDRIISNVVMMG 162

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NFDNV  +L+I  D      S+RR+T+STSG VP + R+ E   V LA+SLHA 
Sbjct: 163 MGEPLANFDNVVTALNIMLDDSAYGLSRRRVTVSTSGMVPAMDRLREACPVALAVSLHAP 222

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+++VPIN+KYP++ L+ AC+ Y   +    +TFEYVML G+NDS   A  L+ I+
Sbjct: 223 NDALRDVIVPINKKYPIKELMAACQRYLEKAPRDFVTFEYVMLDGVNDSVEHARQLLDIV 282

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+P   Y  S  + I  F + + ++ Y    R  RG DI AACGQL 
Sbjct: 283 RDVPCKFNLIPFNPFPNSGYDTSKPEAIRRFRDVLMQADYVVTTRKTRGDDIDAACGQLA 342

Query: 367 SLSK-RIPKVPRQEMQ 381
              + +  +  R ++ 
Sbjct: 343 GKVQDKTRRTERNKVM 358


>gi|261377750|ref|ZP_05982323.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685]
 gi|269146035|gb|EEZ72453.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685]
          Length = 366

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 157/377 (41%), Positives = 232/377 (61%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + L      +G        R  Q+ +WI+  G ++F  M+D+++ +R+ LN
Sbjct: 2   KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWIHQSGAQNFGEMTDLAKSLRYKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  SI  P+++  + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+
Sbjct: 58  EQASIDIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESERGTLCISSQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNL+A EI+ Q+  A   +G           V P   R ISN+VMM
Sbjct: 113 LECTFCSTGRQGFNRNLSAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP+ NF+NV  +LSI  D  G   S+RR+T+STSG VP + ++ + + V LA+SLHA
Sbjct: 162 GMGEPMANFENVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDKLRDTMPVALAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN +VP+N+KYPL+ L+ AC+ Y   +    ITFEYVML G+ND  + A  LI++
Sbjct: 222 SNDEVRNKIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIEL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K +P K NLIPFNP+P   Y  S+ ++I  F + ++++G+   +R  RG DI AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSNNENIRIFIDILQQAGFVVTVRKTRGDDIDAACGQL 341

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +  ++  QI
Sbjct: 342 AGQVQDKTRRQQKWQQI 358


>gi|54294410|ref|YP_126825.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
 gi|81368632|sp|Q5WWH4|RLMN_LEGPL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|53754242|emb|CAH15719.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
          Length = 382

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 171/374 (45%), Positives = 228/374 (60%), Gaps = 19/374 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+     +L E L+           R  Q+++WI+  GIRDF  M+++ + +R+ L
Sbjct: 4   QKVNLLNYNYLQLRELLMAW----DEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +Q   I  PEIV  + S DGT KWLL+           IETV+IPE +RGTLCVSSQVGC
Sbjct: 60  SQLACIDLPEIVACQKSADGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC T  Q   RNL+  EI+ QV LA   L D  G  D          +KI+N+VM
Sbjct: 115 ALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNDGTHD----------KKITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  +++I  D +    SKRR+TLSTSG +P + R+ E   V LA+SLH
Sbjct: 165 MGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVIPEMERLREVSPVALAVSLH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++LRN LVPIN+KYPL  LI  C+ Y      R++TFEYVMLKG+ND P  A  LIK
Sbjct: 225 APTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIK 284

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  +PAK+NLIPFNP+P  +Y  S ++ I  F + + + G ++  R  RG DI AACGQ
Sbjct: 285 LLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQ 344

Query: 365 LKSLSKRIPKVPRQ 378
           L    K      ++
Sbjct: 345 LAGEVKDKTSRSQR 358


>gi|145299533|ref|YP_001142374.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|205829709|sp|A4SP04|RLMN_AERS4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|142852305|gb|ABO90626.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 368

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 213/382 (55%), Gaps = 28/382 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+ +    +++G        R  QI KWIY  G  DF  M+++++ +R  L 
Sbjct: 6   KTNLLDLDRDAMRAFFVELG----EKPFRADQIMKWIYHFGCDDFDQMNNVNKVLRERLK 61

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+  E+ S DGT KW L+       G  E+ETVYIPE+ R TLCVSSQVGC+
Sbjct: 62  AIAEIRAPEVSREQRSSDGTIKWALQV------GGQEVETVYIPEEDRATLCVSSQVGCA 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G                 R I+N+VMM
Sbjct: 116 LACKFCSTAQQGFNRNLKVSEIIGQVWRAAKIVG---------------GKRPITNVVMM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ +  D  G   SKRR+T+STSG VP +  +G++I V LAISLHA
Sbjct: 161 GMGEPLLNLANVIPAMRLMMDDFGYGISKRRVTISTSGVVPALDILGDQIDVALAISLHA 220

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
            ++ LR+ ++PIN KY +E  +   R Y   SN    R+T EYV+L  IND  + A  L 
Sbjct: 221 PNDKLRSEIMPINDKYNIEDFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELA 280

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LK  P+KINLIPFNP+PG  Y       I  FS+ +   G++  +R  RG DI AACG
Sbjct: 281 KVLKDTPSKINLIPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACG 340

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  +  MQ  G
Sbjct: 341 QLVGEVIDRTKRTMKNRMQQDG 362


>gi|332141967|ref|YP_004427705.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551989|gb|AEA98707.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 372

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 162/384 (42%), Positives = 226/384 (58%), Gaps = 22/384 (5%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+ + RE L     ++G        R  Q+ KWIY  G+ DF+ MS++++ +R +
Sbjct: 1   MAKTNLLNLNREGLRNFFKEMG----EKPFRADQVMKWIYQHGVSDFEEMSNLNKNLRAM 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++  I  PEI   + + DGT K+ L        G  E+E+V+IPE  R TLCVSSQVG
Sbjct: 57  LIENCEIKAPEIAYFQEASDGTIKFALTLE-----GGQEVESVWIPETDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C+FC T  Q   RNL+  EI+ QV    + LG          +   S  R I+N+V
Sbjct: 112 CALECTFCSTAQQGFNRNLSVSEIIGQVWRVATFLG----------LSKDSSKRPITNVV 161

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP +  +G++I V LAISL
Sbjct: 162 MMGMGEPLLNLKNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALN 301
           HA +++LRN +VP+N+KY +E  +   R Y   S  N  R+T EYVML  INDS   A  
Sbjct: 222 HAPTDELRNEIVPVNKKYNIEAFLAGVRRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQ 281

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L K+LK  P+KINLIPFNP+PG  Y CS    I  FS+ +   G+++ +R  RG DI AA
Sbjct: 282 LAKVLKDTPSKINLIPFNPYPGSPYTCSSNSRIDRFSKVLMEYGFTTVVRKTRGDDIDAA 341

Query: 362 CGQL-KSLSKRIPKVPRQEMQITG 384
           CGQL   +  R  ++ +++++   
Sbjct: 342 CGQLVGDVVDRTKRLLKKQVKGEA 365


>gi|294084982|ref|YP_003551742.1| hypothetical protein SAR116_1415 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664557|gb|ADE39658.1| hypothetical protein SAR116_1415 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 372

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 204/380 (53%), Positives = 267/380 (70%), Gaps = 18/380 (4%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ +L+G+ +  LEE ++  G+P    + R  QIW+W++  G+ +F  MSD+ + VR  L
Sbjct: 9   QRINLLGLSQTALEEQIIAAGLP----KFRAKQIWRWVWRHGLTNFDEMSDLGKPVREQL 64

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              +    P +     S DGT KWLLRFP        E E VYIP+K+RGTLC+SSQVGC
Sbjct: 65  ATMYKADRPAVSQRLNSKDGTIKWLLRFPD-----GNEAEAVYIPDKTRGTLCISSQVGC 119

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQKLVRNLT +EI  QV+LA   L D+P   +         GR+++NIV+
Sbjct: 120 TLTCSFCHTGTQKLVRNLTVDEICGQVMLAMDELADWPAGRN---------GRRLTNIVL 170

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N++NV +++ I     G++ SKRRITLSTSG VP I R GEE+GV LAISLH
Sbjct: 171 MGMGEPLFNYENVAEAMRIIMSGEGVAVSKRRITLSTSGVVPEIKRAGEELGVNLAISLH 230

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++LR+ LVPINRKY L  LI+ACR+YPGLSNARRIT+EYVML GINDS  D   L+ 
Sbjct: 231 ATRDELRDELVPINRKYKLAALIEACRNYPGLSNARRITWEYVMLDGINDSDEDCRQLLA 290

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KGIP+K+NLIPFNPWPG  Y+CS    I  F++ + ++GY+SP+RTPRG DILAACGQ
Sbjct: 291 LIKGIPSKLNLIPFNPWPGSPYVCSKGDRIDAFAKRVLKAGYASPVRTPRGRDILAACGQ 350

Query: 365 LKSLSKRIPKVPRQEMQITG 384
           LKS S+RIP+  + +   T 
Sbjct: 351 LKSASQRIPRHKKAKTTETA 370


>gi|78484965|ref|YP_390890.1| hypothetical protein Tcr_0620 [Thiomicrospira crunogena XCL-2]
 gi|123741643|sp|Q31I07|RLMN_THICR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78363251|gb|ABB41216.1| radical SAM enzyme, Cfr family [Thiomicrospira crunogena XCL-2]
          Length = 370

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 163/379 (43%), Positives = 219/379 (57%), Gaps = 21/379 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K  L+GM R EL E    IG        R +Q+ KWI+  G+ DF+ M++IS+ +R  L
Sbjct: 7   DKVDLLGMDRAELTEFFASIG----EKPFRAAQVMKWIHQFGVSDFEEMTNISKSLREKL 62

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++   I  P+IV E+ S DGT KWLL      +     +E V+IPEKSRGTLC+SSQVGC
Sbjct: 63  SKTALIRTPKIVSEQRSADGTIKWLLE-----VDNHNCVEAVFIPEKSRGTLCISSQVGC 117

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG Q   RNL   EI+ Q+ +A   LG             P   R ISN+V 
Sbjct: 118 ALECSFCSTGQQGFNRNLENWEIVAQMWVANKALG-----------CKPKEERIISNVVF 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  +   +  I  D      SKRR+T+ST+G VP I ++ E + V LAISLH
Sbjct: 167 MGMGEPLLNVKHTFPTARILMDDNAYGLSKRRVTISTAGVVPAIDKIKESLDVSLAISLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303
           A +N LR+ LVPIN+KYPLE+L+ A   Y    ++++ +T EYVML  +ND    A  LI
Sbjct: 227 APNNALRDELVPINKKYPLEVLMPALHRYVEGGHSKKHVTVEYVMLDHVNDRLEHAQQLI 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L  +P K+NLIPFNP+P  +Y  S    +  F + +  +G +  +R  RG DI AACG
Sbjct: 287 ELLGDLPCKVNLIPFNPFPNTDYKRSSNNAVHRFKDALMEAGVNCTVRRTRGDDIDAACG 346

Query: 364 QLKSLSKRIPKVPRQEMQI 382
           QL    K   K   Q + +
Sbjct: 347 QLAGKVKDRTKRTLQTVNL 365


>gi|117619957|ref|YP_856292.1| hypothetical protein AHA_1756 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|205829708|sp|A0KJ41|RLMN_AERHH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|117561364|gb|ABK38312.1| radical SAM enzyme, Cfr family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 367

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 214/382 (56%), Gaps = 28/382 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+ +    +++G        R  Q+ KWIY  G  DF  M+++++ +R  L 
Sbjct: 5   KTNLLDLDRDAMRAFFVELG----EKPFRADQVMKWIYHFGCDDFDQMNNVNKVLRERLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+  E+ S DGT KW L+       G  E+ETVYIPE+ R TLCVSSQVGC+
Sbjct: 61  AIAEIRAPEVSREQRSSDGTIKWALQV------GGQEVETVYIPEEDRATLCVSSQVGCA 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G                 R I+N+VMM
Sbjct: 115 LECKFCSTAQQGFNRNLKVSEIIGQVWRAAKIVG---------------GKRPITNVVMM 159

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ +  D  G   SKRR+T+STSG VP +  +G++I V LAISLHA
Sbjct: 160 GMGEPLLNLANVVPAMRLMMDDFGYGISKRRVTISTSGVVPALDMLGDQIDVALAISLHA 219

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
            ++ LR+ ++PIN KY +E  +   R Y G SN    R+T EYV+L  IND  + A  L 
Sbjct: 220 PNDKLRSEIMPINDKYNIEEFLAGVRRYLGKSNANGGRVTVEYVLLDHINDDMQHAHELA 279

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LK  P+KINLIPFNP+PG  Y       I  FS+ +   G++  +R  RG DI AACG
Sbjct: 280 KVLKDTPSKINLIPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACG 339

Query: 364 QLKSLS-KRIPKVPRQEMQITG 384
           QL      R  +  +  MQ  G
Sbjct: 340 QLVGEVIDRTKRTMKNRMQQDG 361


>gi|304398588|ref|ZP_07380460.1| radical SAM enzyme, Cfr family [Pantoea sp. aB]
 gi|304353799|gb|EFM18174.1| radical SAM enzyme, Cfr family [Pantoea sp. aB]
          Length = 389

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 162/383 (42%), Positives = 221/383 (57%), Gaps = 23/383 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E  L +G        R  Q+ KWIY     DF+ M+DI++++R+ L
Sbjct: 21  QKINLLDLNRQQMREFFLSLG----EKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+ +E  S DGT KW +R   +       +ETVYIPE  R TLCVSSQVGC
Sbjct: 77  MELTEIRAPEVAEEMRSTDGTIKWAIRVGDQL------VETVYIPEGDRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKITGQRPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ LR+ +VPIN+KY +E  + A + Y   SNA   R+T EYV+L  +NDS  DA  L
Sbjct: 241 AANDKLRDDIVPINKKYNIETFLAAVKRYIAKSNANQGRVTIEYVLLDHVNDSTDDAHEL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AAC
Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360

Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384
           GQL      R  +  R +M    
Sbjct: 361 GQLAGEVIDRTKRTMRIKMAGEA 383


>gi|56551928|ref|YP_162767.1| Cfr family radical SAM enzyme [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|81355066|sp|Q5NNQ4|RLMN_ZYMMO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|56543502|gb|AAV89656.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 391

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 190/372 (51%), Positives = 259/372 (69%), Gaps = 16/372 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ RE++  AL   G+ ++  ++RT Q+W W+Y RG   F GM+DI++ +R  L 
Sbjct: 27  RIDLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF+I  PE+V  +IS DGTRKWLL+          + E V+IP+  RGTLC+SSQ+GC+
Sbjct: 87  EHFAISRPEVVTMQISTDGTRKWLLKT-----DDGYDYEMVFIPDADRGTLCISSQIGCT 141

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC TGT +LVRNLT  EI+ Q++LAR  L ++P   +         GR ++N+VMM
Sbjct: 142 LNCRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPSKPE---------GRLLTNVVMM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV+ +L +  D  G++ S+RRITLSTSG VP +AR GEEIGV LA+SLHA
Sbjct: 193 GMGEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V+  +R+ +VPIN+KY ++ L+ AC  YPG++NARRITFEYVMLK  NDS  DA  L+++
Sbjct: 253 VTKVVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRL 312

Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           L+   +PAK+NLIPFNPWP   Y CS  + I  FSE +  +G S+P+R  RG DI+AACG
Sbjct: 313 LQYYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACG 372

Query: 364 QLKSLSKRIPKV 375
           QLKS ++R  K 
Sbjct: 373 QLKSAAERQSKR 384


>gi|91775976|ref|YP_545732.1| hypothetical protein Mfla_1623 [Methylobacillus flagellatus KT]
 gi|123078840|sp|Q1H0U6|RLMN_METFK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|91709963|gb|ABE49891.1| 23S rRNA m(2)A-2503 methyltransferase [Methylobacillus flagellatus
           KT]
          Length = 362

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 159/378 (42%), Positives = 220/378 (58%), Gaps = 20/378 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+   +  L E    IG        R  Q+ +W++  G+ DF  M+DI++ +R  L +
Sbjct: 3   VNLLNFNQAALAEYFQGIG----EKPFRAKQMMRWMHHFGVSDFGEMTDIAKALREKLAK 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +  P +  E+IS DGTRKWL+      +G    +ETV+IPE  RGTLCVSSQVGC+L
Sbjct: 59  EAVVAPPSVHLEQISEDGTRKWLI-----DVGAGNGVETVFIPEDDRGTLCVSSQVGCAL 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG Q   RNL+  EI+ Q+ +A   LG             P   R ISN+VMMG
Sbjct: 114 DCTFCSTGRQGFNRNLSVSEIIGQLWVANKALG-----------RDPKGDRIISNVVMMG 162

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NFDNV  +++I  D      S+RR+TLSTSG VP + R+ EE  V LA+SLHA 
Sbjct: 163 MGEPLANFDNVVAAMNIMLDDSAYGLSRRRVTLSTSGMVPAMDRLREECPVALAVSLHAP 222

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ +VPINRKYP+  L+ AC+ Y   +    +TFEYVML G+ND+   A  L+ I+
Sbjct: 223 NDALRDEIVPINRKYPIAQLMAACQRYLEKAPRDFVTFEYVMLDGVNDTAEHARQLLNIV 282

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+P   Y  S   +I  F + + ++GY    R  RG DI AACGQL 
Sbjct: 283 QDVPCKFNLIPFNPFPNSGYDTSKPDNIRRFRDILMQAGYVVTTRKTRGEDIDAACGQLA 342

Query: 367 SLSKRIPKVPRQEMQITG 384
              +   K   + +++  
Sbjct: 343 GKVQDKTKRSLRRIKVEA 360


>gi|303252097|ref|ZP_07338266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248296|ref|ZP_07530322.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649079|gb|EFL79266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855230|gb|EFM87407.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 393

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 156/377 (41%), Positives = 218/377 (57%), Gaps = 22/377 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKINLMNLTRKEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++          +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP +  + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ ++PIN+KY +EML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 245 APNDELRDEIMPINKKYNIEMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364

Query: 363 GQLKSLSKRIPKVPRQE 379
           GQL        K   ++
Sbjct: 365 GQLAGDVIDRTKRTMEK 381


>gi|261494121|ref|ZP_05990624.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496038|ref|ZP_05992448.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308288|gb|EEY09581.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310287|gb|EEY11487.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 415

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 158/378 (41%), Positives = 221/378 (58%), Gaps = 23/378 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 47  EKINLLNLNRQEMRELFAEMG----EKPFRADQLMKWIYHFGEENFDNMSNINKVLREKL 102

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+  E+ S DGT KW ++          +IETVYIPE  R TLCVSSQVGC
Sbjct: 103 KRIAEIKAPEVAVEQRSADGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 156

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL+  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 157 ALACTFCSTAQQGFNRNLSVAEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 206

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLSTSG VP + ++ E+I V LAISLH
Sbjct: 207 MGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLH 266

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ LVPIN+KY ++ML+D+   Y  +SNA   ++T EYVML  +NDS   A  L
Sbjct: 267 APNDELRDELVPINKKYNIKMLMDSVNKYLEVSNANHGKVTIEYVMLDHVNDSTDHAHQL 326

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 327 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVTVRKTRGDDIDAAC 386

Query: 363 GQLKSLS-KRIPKVPRQE 379
           GQL      R  +   + 
Sbjct: 387 GQLAGDVIDRTKRTLEKR 404


>gi|239997032|ref|ZP_04717556.1| hypothetical protein AmacA2_21513 [Alteromonas macleodii ATCC
           27126]
          Length = 372

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 163/384 (42%), Positives = 226/384 (58%), Gaps = 22/384 (5%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+ + RE L     ++G        R  Q+ KWIY  GI DF+ MS++++ +R +
Sbjct: 1   MAKTNLLNLNREGLRNFFKEMG----EKPFRADQVMKWIYQHGISDFEEMSNLNKNLRAM 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++  I  PEI   + + DGT K+ L        G  E+E+V+IPE  R TLCVSSQVG
Sbjct: 57  LIENCEIKAPEIAYFQEASDGTIKFALTLE-----GGQEVESVWIPETDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C+FC T  Q   RNL+  EI+ QV    + LG          +   S  R I+N+V
Sbjct: 112 CALECTFCSTAQQGFNRNLSVSEIIGQVWRVATFLG----------LSKDSSKRPITNVV 161

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP +  +G++I V LAISL
Sbjct: 162 MMGMGEPLLNLKNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALN 301
           HA +++LRN +VPIN+KY +E  +   R Y   S  N  R+T EYVML  INDS   A  
Sbjct: 222 HAPTDELRNEIVPINKKYNIEAFLAGVRRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQ 281

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L K+LK  P+KINLIPFNP+PG  Y CS    I  F++ +   G+++ +R  RG DI AA
Sbjct: 282 LAKVLKDTPSKINLIPFNPYPGSPYTCSSNSRIDRFAKVLMEYGFTTVVRKTRGDDIDAA 341

Query: 362 CGQL-KSLSKRIPKVPRQEMQITG 384
           CGQL   +  R  ++ +++++   
Sbjct: 342 CGQLVGDVVDRTKRMLKKQVKGEA 365


>gi|313201450|ref|YP_004040108.1| radical sam enzyme, cfr family [Methylovorus sp. MP688]
 gi|312440766|gb|ADQ84872.1| radical SAM enzyme, Cfr family [Methylovorus sp. MP688]
          Length = 367

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 158/376 (42%), Positives = 219/376 (58%), Gaps = 21/376 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+   + +L E    +G        R  Q+ +W++  G+ DF  M+DI++ +R  L  
Sbjct: 3   VNLLNYSQPQLAEYFHGLG----EKPFRAKQLMRWMHHFGVHDFDQMTDIAKSLRDKLKD 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P I  E+IS DGTRKWL+       G    +ETV+IPE  RGTLCVSSQVGC+L
Sbjct: 59  QAEITPPGIKLEQISEDGTRKWLI-----DAGTGNGVETVFIPEAERGTLCVSSQVGCAL 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG Q   RNL+  EI+ Q+ +A   LG             P   R ISN+VMMG
Sbjct: 114 ECTFCSTGRQGFNRNLSVSEIIGQLWVANKALG-----------RDPKGDRIISNVVMMG 162

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NFDNV  +L+I  D      S+RR+T+STSG VP + R+ E   V LA+SLHA 
Sbjct: 163 MGEPLANFDNVVTALNIMLDDSAYGLSRRRVTVSTSGMVPAMDRLREACPVALAVSLHAP 222

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+++VPIN+KYP++ L+ AC+ Y   +    +TFEYVML G+NDS   A  L+ I+
Sbjct: 223 NDALRDVIVPINKKYPIKELMAACQRYLEKAPRDFVTFEYVMLDGVNDSVEHARQLLDIV 282

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+P   Y  S  + I  F + + ++ Y    R  RG DI AACGQL 
Sbjct: 283 RDVPCKFNLIPFNPFPNSGYDTSKPEAIRRFRDVLMQADYVVTTRKTRGDDIDAACGQLA 342

Query: 367 SLSK-RIPKVPRQEMQ 381
              + +  +  R ++ 
Sbjct: 343 GKVQDKTRRTERNKVM 358


>gi|71908601|ref|YP_286188.1| hypothetical protein Daro_2988 [Dechloromonas aromatica RCB]
 gi|123760407|sp|Q47BR3|RLMN_DECAR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|71848222|gb|AAZ47718.1| 23S rRNA m(2)A-2503 methyltransferase [Dechloromonas aromatica RCB]
          Length = 364

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/369 (41%), Positives = 215/369 (58%), Gaps = 20/369 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+    E L     + G        R  Q+ +WI+  G+ DF  M+DI++ +R  L  
Sbjct: 3   VNLLDFDGESLTAWFAEQG----EKPFRAKQVLRWIHRSGVADFDAMTDIAKSLREKLKA 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +  P +V +K+S DGTRK+L+      +G    +ETV+IPE  RGTLC+S+Q GC+L
Sbjct: 59  KAVVAPPAVVSDKLSDDGTRKFLI-----DVGNGNAVETVFIPEDDRGTLCISTQAGCAL 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG Q   RNL+  EI+ Q+  A   LG   G E           R ISN+V+MG
Sbjct: 114 DCAFCSTGKQGFNRNLSVAEIIGQLWQANHALGAVHGDE-----------RVISNVVLMG 162

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+N   +L +  D      S+RRIT+STSG VP + R+G+E  V LA+SLHA 
Sbjct: 163 MGEPLANFENSVAALKLMLDDNAYGLSRRRITVSTSGLVPVMDRLGDECPVALAVSLHAP 222

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVPIN+KYPL+ L+ AC+ Y   +    ITFEY+ML GIND+   A  L+ ++
Sbjct: 223 NDKLRDQLVPINQKYPLKELMAACQRYLEKAPRDFITFEYIMLDGINDTDAHARELLALV 282

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           K +  K NLIPFNP+PG  +  S  + +  F++ + ++G  +  R  RG DI AACGQL 
Sbjct: 283 KSVHCKFNLIPFNPFPGSPFRRSPAERVRHFADILMQAGIVTTTRKTRGDDIDAACGQLA 342

Query: 367 SLSKRIPKV 375
              +   K 
Sbjct: 343 GQVQDKTKR 351


>gi|290476003|ref|YP_003468899.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
           bovienii SS-2004]
 gi|289175332|emb|CBJ82135.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
           bovienii SS-2004]
          Length = 392

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 158/378 (41%), Positives = 219/378 (57%), Gaps = 23/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ +  + +G        R  Q+ KW+Y     DF+ M+DI++ +R  L 
Sbjct: 25  KINLLDLNRKQMRQFFIDMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRMKLQ 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q   I  PE+ +E+ S DGT KW +           ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 81  QVAEIKAPEVAEEQRSADGTIKWAITVGD------QQVETVYIPEDERATLCVSSQVGCA 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  S  R I+N+VMM
Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSSGRRPITNVVMM 184

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ + V LAISLHA
Sbjct: 185 GMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMVDVALAISLHA 244

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +E  +   R Y   SNA   R+T EYVML  +NDS   A  L 
Sbjct: 245 PTDDVRDEIVPINRKYNIEEFLAGVRRYLAKSNANQGRVTVEYVMLDHVNDSVEQAHQLA 304

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P+KINLIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACG
Sbjct: 305 ECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 364

Query: 364 QLKSLS-KRIPKVPRQEM 380
           QL      R  +  ++ +
Sbjct: 365 QLAGDVIDRTKRTLKKRL 382


>gi|237654050|ref|YP_002890364.1| radical SAM protein [Thauera sp. MZ1T]
 gi|237625297|gb|ACR01987.1| radical SAM enzyme, Cfr family [Thauera sp. MZ1T]
          Length = 382

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/382 (41%), Positives = 217/382 (56%), Gaps = 14/382 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M+     +L+    + L      +G        R  Q+ +W++  G  DF  M+D+++ +
Sbjct: 1   MSTPNPVNLLDFDVDGLVAWFAGLG----EKPFRARQVMRWMHHEGCDDFDAMTDVAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L     I  P  V + IS DGTRKWLL      +G    +ETV+IPE SRGTLCVSS
Sbjct: 57  RAKLKDLAVIRPPVPVRDSISADGTRKWLL-----DVGNANAVETVFIPETSRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG----DFPGCEDIEGMVIPSVG 176
           Q GC+L C+FC TG Q   RNL+A EI+ Q+ LA  LLG    D               G
Sbjct: 112 QAGCALDCAFCSTGKQGFNRNLSAAEIIGQLWLANKLLGAARADAEEHATDLEAGEKDNG 171

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           R ISN+VMMGMGEPL NFDNV  +L +  D      S+RR+T+STSG VP + R+ +E  
Sbjct: 172 RIISNVVMMGMGEPLANFDNVVTALRLMLDDHAYGLSRRRVTVSTSGIVPAMDRLRDECP 231

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V LA+SLHA ++ LR+ LVPIN+KYPL  L+ AC+ Y   +    +TFEYVML+G+NDS 
Sbjct: 232 VALAVSLHASNDALRDRLVPINQKYPLRELMAACQRYLERAPRDFVTFEYVMLEGVNDSD 291

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L+ +++  P K NLIPFNP+P   +  S  + I  F+  +  +G  +  R  RG 
Sbjct: 292 AHARELVALVRDTPCKFNLIPFNPFPDSGFQRSPAERIRRFAGILIDAGIVTTTRKTRGD 351

Query: 357 DILAACGQLKSLSK-RIPKVPR 377
           D+ AACGQL    + R  +  R
Sbjct: 352 DVDAACGQLAGQVQDRTRRTVR 373


>gi|300704417|ref|YP_003746020.1| hypothetical protein RCFBP_20221 [Ralstonia solanacearum CFBP2957]
 gi|299072081|emb|CBJ43413.1| conserved protein of unknown function, predicted radical SAM enzyme
           [Ralstonia solanacearum CFBP2957]
          Length = 383

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 151/378 (39%), Positives = 218/378 (57%), Gaps = 18/378 (4%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN +   +L+    + L      +G        R  Q+ +WI+  G  DF  M+D+++ +
Sbjct: 1   MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    +I  P ++ + +S DGTRKWL+      +G    +ETVYIPE++RGTLCVSS
Sbjct: 55  REKLATRATIQAPAVISDHLSSDGTRKWLV-----DVGAGNAVETVYIPEETRGTLCVSS 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   +    G         P   R I+
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWMAEFAMRKQLGR-------GPKDDRVIT 162

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+  ++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSHDLPVALA 222

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR++LVP+N+KYPL  L+ ACR Y   +    ITFEY ML G+NDS   A 
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L++++  +P K NLIPFNP+P      S+ + I  FS+ +  +G  + IR  RG DI A
Sbjct: 283 ELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 343 ACGQLAGEVKDRTRLAER 360


>gi|326405176|ref|YP_004285258.1| ribosomal RNA large subunit methyltransferase N [Acidiphilium
           multivorum AIU301]
 gi|325052038|dbj|BAJ82376.1| ribosomal RNA large subunit methyltransferase N [Acidiphilium
           multivorum AIU301]
          Length = 394

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 186/365 (50%), Positives = 249/365 (68%), Gaps = 18/365 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ REEL  A+ +IG        R  Q+W WIY +G+ DF  M++I++ +R  L 
Sbjct: 41  RRDLVGLSREELAAAMAEIG----EQPFRAKQLWHWIYHQGVTDFAAMANIAKPLRAKLA 96

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123
           + F+I  PE+  + +S D TRK L RF          +ETVYIP+  + RG +C+SSQVG
Sbjct: 97  ERFAIGRPEVAADHLSADETRKMLFRFRDH-----EAVETVYIPDVTEDRGAVCLSSQVG 151

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C FC+TGTQ+L RNL+A EI+ Q +  R   G++P  +           R +S IV
Sbjct: 152 CTLSCRFCHTGTQRLTRNLSAAEIVGQFMAMRDAYGEWPSPKG-------ETPRLLSTIV 204

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++NV K++ I  D  G+  S+RRITLSTSG VP + R G E+GV LA+SL
Sbjct: 205 LMGMGEPLYNYENVAKAMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSL 264

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV++D+R+++VP+NRKY +  LI ACR YPG SNARRITFEYVMLKGINDS  DA  L+
Sbjct: 265 HAVTDDVRDVIVPLNRKYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLV 324

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG  Y  S    I  F+  +  +GY++P+RTPRG DILAACG
Sbjct: 325 ELIDGIPAKVNLIPFNPWPGSTYETSSGNAIRRFANIVMDAGYAAPVRTPRGQDILAACG 384

Query: 364 QLKSL 368
           QLKS 
Sbjct: 385 QLKSK 389


>gi|255292044|dbj|BAH90525.1| conserved hypothetical protein [uncultured bacterium]
 gi|255292512|dbj|BAH89627.1| radical SAM enzyme [uncultured bacterium]
 gi|255293032|dbj|BAH90127.1| radical SAM enzyme [uncultured bacterium]
          Length = 364

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 161/372 (43%), Positives = 216/372 (58%), Gaps = 22/372 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R  LE     +G        R  Q+ +W++  G  DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLDRPGLEGLFASLG----EKPFRAGQVLQWLHAHGCEDFAAMTNLSKALRERLA 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q   I  P++  + ++ DGTRKWL + P     G   IETVYIPE  RGTLCVSSQVGC 
Sbjct: 63  QESQIAAPQVQADHLASDGTRKWLFQLP-----GGSAIETVYIPETRRGTLCVSSQVGCQ 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC T  Q   RNL  +EI+ Q+  A  LL   P  E           + I+N+V M
Sbjct: 118 LNCSFCQTARQGFNRNLGVDEIVGQIWAASRLLPPHPARE-----------KPITNVVFM 166

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +    S RR+T+STSG VP I R+ EE  V LA+SLHA
Sbjct: 167 GMGEPLLNFDNVVAAIRVMLDDLAYGLSWRRVTVSTSGVVPMIDRLREECPVALAVSLHA 226

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             + LR  LVP+NR+YP+++L+DACR Y      RRITFEY +L G+ND P  A  L K+
Sbjct: 227 PDDALRAELVPLNRRYPIDVLLDACRRYVAGDQRRRITFEYTLLAGVNDHPGQAKALAKL 286

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L  +P+K+NLIP+NP  G  Y  S  + +  F + + R G  + +R  RG DI  ACGQL
Sbjct: 287 LARVPSKVNLIPYNPVAGLPYATSPPQAVAQFRDELLRHGLVATVRKTRGDDIAGACGQL 346

Query: 366 KSLSKRIPKVPR 377
                 +P+  R
Sbjct: 347 AGQV--LPRARR 356


>gi|88799903|ref|ZP_01115475.1| radical SAM enzyme, Cfr family protein [Reinekea sp. MED297]
 gi|88777334|gb|EAR08537.1| radical SAM enzyme, Cfr family protein [Reinekea sp. MED297]
          Length = 386

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/374 (40%), Positives = 219/374 (58%), Gaps = 20/374 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM    +E    +        R R +Q+ KWI+ RG+ DF  M+D+S+ +R  L 
Sbjct: 7   KVNLLGMGMAAMERFFTE---ELGEKRFRATQVLKWIHQRGVDDFDDMTDVSKSLREKLK 63

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+  +K S DGTRKW+++ P     G   +ETVYIPE  RGTLCVSSQ+GC+
Sbjct: 64  AVAVIDAPEVTFKKFSKDGTRKWVMKMP-----GGSAVETVYIPEDDRGTLCVSSQIGCA 118

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   R+L+A EI+ Q+ +A     +     +          R ++N+VMM
Sbjct: 119 LDCSFCSTGKQGFNRDLSAAEIIGQLWVAARSWDEPGKKRE----------RHVTNVVMM 168

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N+DNV +++++  +      SKRR+TLSTSG VP I  + EE  V +A+SLHA
Sbjct: 169 GMGEPLLNYDNVVEAMNLMMEDNAYGLSKRRVTLSTSGVVPRILDLAEETDVSMALSLHA 228

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304
            ++ LRN LVP+N++Y L+  +DA   Y      +R+ T EY ++  +ND P  A  L+ 
Sbjct: 229 PNDALRNELVPLNKRYGLKQTLDAVNTYFARLPDKRVPTIEYTLINEVNDKPEHAHELVD 288

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+  P KINLIPFNP+P   Y       I  F + + ++GY+  +R  RG DI AACGQ
Sbjct: 289 LLRETPCKINLIPFNPFPNSGYERPSNNRIHRFKDILHQAGYNVTVRKTRGDDIDAACGQ 348

Query: 365 L-KSLSKRIPKVPR 377
           L   ++ +  +  R
Sbjct: 349 LVGQVADKTRRSVR 362


>gi|148261683|ref|YP_001235810.1| radical SAM protein [Acidiphilium cryptum JF-5]
 gi|205829703|sp|A5G209|RLMN_ACICJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146403364|gb|ABQ31891.1| 23S rRNA m(2)A-2503 methyltransferase [Acidiphilium cryptum JF-5]
          Length = 390

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 186/365 (50%), Positives = 249/365 (68%), Gaps = 18/365 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ REEL  A+ +IG        R  Q+W WIY +G+ DF  M++I++ +R  L 
Sbjct: 37  RRDLVGLSREELAAAMAEIG----EQPFRAKQLWHWIYHQGVTDFAAMANIAKPLRAKLA 92

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123
           + F+I  PE+  + +S D TRK L RF          +ETVYIP+  + RG +C+SSQVG
Sbjct: 93  ERFAIGRPEVAADHLSADETRKMLFRFRDH-----EAVETVYIPDVTEDRGAVCLSSQVG 147

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C FC+TGTQ+L RNL+A EI+ Q +  R   G++P  +           R +S IV
Sbjct: 148 CTLSCRFCHTGTQRLTRNLSAAEIVGQFMAMRDAYGEWPSPKG-------ETPRLLSTIV 200

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++NV K++ I  D  G+  S+RRITLSTSG VP + R G E+GV LA+SL
Sbjct: 201 LMGMGEPLYNYENVAKAMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSL 260

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV++D+R+++VP+NRKY +  LI ACR YPG SNARRITFEYVMLKGINDS  DA  L+
Sbjct: 261 HAVTDDVRDVIVPLNRKYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLV 320

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG  Y  S    I  F+  +  +GY++P+RTPRG DILAACG
Sbjct: 321 ELIDGIPAKVNLIPFNPWPGSTYETSSGNAIRRFANIVMDAGYAAPVRTPRGQDILAACG 380

Query: 364 QLKSL 368
           QLKS 
Sbjct: 381 QLKSK 385


>gi|296282660|ref|ZP_06860658.1| Fe-S-cluster redox protein [Citromicrobium bathyomarinum JL354]
          Length = 417

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 189/382 (49%), Positives = 258/382 (67%), Gaps = 13/382 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  LIG+ +  + E     G+  +  ++R+ Q++ W+Y RG+ +F+ M+DI++ +R  L 
Sbjct: 29  RVDLIGLPKARIRELFEAAGLDAKAAKLRSKQVFHWLYHRGVTEFEAMTDIAKTMRPWLT 88

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  PE+V+   S DGTRKW+LR          + E V+IP+  RGTLC+SSQVGC+
Sbjct: 89  ERFVIGRPEVVEAHHSTDGTRKWVLRT-----ADGNDFEMVFIPDADRGTLCISSQVGCT 143

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC------EDIEGMVIPSVGRKI 179
           L C FC+TGT +LVRNLT  EI+ QV+LAR  LG++P        E  +     S GR +
Sbjct: 144 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDSLGEWPKGSMAGLDEVEDSAEYTSDGRLL 203

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +NIV+MGMGEPL NFDNV+ ++ +  D  GL+ SKRRITLSTSG VP + R GEEIGV L
Sbjct: 204 TNIVLMGMGEPLYNFDNVRDAMKLVMDGDGLALSKRRITLSTSGVVPMMERCGEEIGVNL 263

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHAV  D+R+ +VP+N+KY +E L+ AC  YPG SNARRITFEY+MLK  NDS  DA
Sbjct: 264 AVSLHAVRKDIRDEIVPLNKKYGIEELLQACADYPGASNARRITFEYIMLKDKNDSDEDA 323

Query: 300 LNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
             L+++LK   +PAK+NLIPFNPWPG +Y  S  + I  FS+ +   G S+P+RTPRG D
Sbjct: 324 RELVRLLKQYDLPAKVNLIPFNPWPGSDYETSLPERIRAFSDIVFEGGISAPVRTPRGRD 383

Query: 358 ILAACGQLKSLSKRIPKVPRQE 379
           I AACGQLK+ +++  +  R  
Sbjct: 384 IGAACGQLKTAAEKKSRAQRDR 405


>gi|212639614|ref|YP_002316134.1| ribosomal RNA large subunit methyltransferase N [Anoxybacillus
           flavithermus WK1]
 gi|212561094|gb|ACJ34149.1| Predicted Fe-S-cluster redox enzyme [Anoxybacillus flavithermus
           WK1]
          Length = 349

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 202/367 (55%), Gaps = 25/367 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  M  E+L+  + + G        R +QI++W+Y +    F+ M++I + +R  L 
Sbjct: 2   KPSIYSMRLEDLQSWVEQQG----EKPFRATQIFEWLYKKRATSFEDMTNIPKALRERLA 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I   + + ++ S DGT K+L             IETV +      ++CV++QVGC 
Sbjct: 58  EHFVITTLKTLVQQTSKDGTMKFLFELHD-----GYSIETVLMRHDYGNSICVTTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L RNL A EI+ QV+  +  L +                 ++S+IV+M
Sbjct: 113 IGCTFCASTLGGLKRNLQAGEIVAQVVKVQKALDE--------------TNERVSSIVVM 158

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+D + K L I +   GL    R IT+STSG +P I +  +E + +  AISLH
Sbjct: 159 GIGEPFDNYDELIKFLKIVNHPKGLHIGARHITVSTSGIIPKIYQFADENMQINFAISLH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A + +LR+ L+PINR Y L  L++A R+Y   +   R+TFEY +  G+ND    A  L +
Sbjct: 219 APNTELRSKLMPINRAYKLPELMEAVRYYIEKTGR-RVTFEYGLFGGVNDQIEHAEELAE 277

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KG+   +NLIP N  P   Y+ + ++ I  F + +K+ G +  IR  +G DI AACGQ
Sbjct: 278 LIKGLKCHVNLIPVNYVPERNYVRTPREQIFAFEKTLKKHGINVTIRREQGHDIDAACGQ 337

Query: 365 LKSLSKR 371
           L++  ++
Sbjct: 338 LRAKERK 344


>gi|85059741|ref|YP_455443.1| hypothetical protein SG1763 [Sodalis glossinidius str. 'morsitans']
 gi|123752598|sp|Q2NS37|RLMN_SODGM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|84780261|dbj|BAE75038.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 393

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 159/379 (41%), Positives = 212/379 (55%), Gaps = 23/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ M R++L E    +G        R  Q+ KWIY     DF  M+DI++ +R  L
Sbjct: 25  QKLNLLDMNRQQLREFFSSMG----EKPFRADQVMKWIYHYCCDDFDQMTDINKHLRARL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+ +E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC
Sbjct: 81  KALAEIRAPEVAEEQRSADGTIKWAIKVGD------QQVETVYIPEDDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 135 ALQCTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 185 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALEKLGDMIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302
           A ++ +R+ +VPINRKY +E  + A R Y   SN    R+T EYVML  IND    A  L
Sbjct: 245 APNDTIRDEIVPINRKYNIETFLSAVRCYLDKSNANKGRVTVEYVMLDHINDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
              LK  P KINLIP+NP+PG  Y  S    +  F++ +    +++ +R  RG DI AAC
Sbjct: 305 AACLKYTPCKINLIPWNPFPGAPYGRSSNSRVDRFAKVLMGYEFTTIVRKTRGDDIDAAC 364

Query: 363 GQLKSLS-KRIPKVPRQEM 380
           GQL      R  +  R+ M
Sbjct: 365 GQLAGEVIDRTKRTLRKRM 383


>gi|186476180|ref|YP_001857650.1| radical SAM protein [Burkholderia phymatum STM815]
 gi|205829685|sp|B2JIV3|RLMN_BURP8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|184192639|gb|ACC70604.1| radical SAM enzyme, Cfr family [Burkholderia phymatum STM815]
          Length = 382

 Score =  454 bits (1169), Expect = e-126,   Method: Composition-based stats.
 Identities = 151/382 (39%), Positives = 216/382 (56%), Gaps = 10/382 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+ +    L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSSPTVNLLDLDAAGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    SI  P +V + IS DGTRKWL+      +G    +ETVYIPE++RGTLCVSS
Sbjct: 57  REKLKGRASITMPPVVSDHISSDGTRKWLV-----DVGNGNAVETVYIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
           Q GC++ C FC TG Q   RNL   EI+ Q+ +A   L    G            G ++ 
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLGTGEIIGQLRMAEFALRASRGTAGGRATGGDGKGERVV 171

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA ++ LR+ LVP+N+KYPL  L+ AC+ Y  ++    ITFEY ML G+NDS   A
Sbjct: 232 AVSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAHA 291

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+ + + +P K NLIPFNP+P    L S  + I  F++ +  +G  + +R  RG DI 
Sbjct: 292 RELLAVTRDVPCKFNLIPFNPFPESGLLRSKSEQIKRFAQVLMDAGVVTTVRKTRGDDID 351

Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381
           AACGQL    K   ++  +  +
Sbjct: 352 AACGQLAGAVKDRTRLAERTGK 373


>gi|113868341|ref|YP_726830.1| Fe-S-cluster redox protein [Ralstonia eutropha H16]
 gi|123032871|sp|Q0K959|RLMN_RALEH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|113527117|emb|CAJ93462.1| Predicted Fe-S-cluster redox enzyme [Ralstonia eutropha H16]
          Length = 384

 Score =  454 bits (1169), Expect = e-126,   Method: Composition-based stats.
 Identities = 156/378 (41%), Positives = 217/378 (57%), Gaps = 19/378 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN L   +L+ +  + L     ++G        R  Q+ +WI+  G   F  MSD+++ +
Sbjct: 1   MNAL--VNLLDLDADALTAYCGELG----EKPFRARQLQRWIHHYGASRFDAMSDLAKSL 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L     I  P  + + +S DGTRKWLL      +G    +ETVYIPE++RGTLCVSS
Sbjct: 55  REKLATRAEIRAPAAITDHLSADGTRKWLL-----DVGQGNAVETVYIPEETRGTLCVSS 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   + +  G         P   R IS
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMREQLGR-------GPKDDRVIS 162

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+ +++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALA 222

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR++LVP+N+KYPL  L+ ACR Y   +    ITFEY ML G+ND    A 
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+K++  +P K NLIPFNP+P      S+   I  F++ +  +G  + IR  RG DI A
Sbjct: 283 ELLKLVADVPCKFNLIPFNPFPESGLKRSNNDQIRRFAQVLMDAGIVTTIRKTRGDDIDA 342

Query: 361 ACGQLKSLSK-RIPKVPR 377
           ACGQL    K R   V R
Sbjct: 343 ACGQLAGEVKDRTRLVER 360


>gi|254513997|ref|ZP_05126058.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
 gi|219676240|gb|EED32605.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
          Length = 381

 Score =  454 bits (1169), Expect = e-126,   Method: Composition-based stats.
 Identities = 157/378 (41%), Positives = 218/378 (57%), Gaps = 22/378 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ +L+GM R +LE+  L +G      R R  Q+ KW++ +G  DF  MS++ + +R  L
Sbjct: 12  ERINLLGMSRTQLEDFFLGLG----EKRFRAQQLMKWMHHQGECDFSAMSNLGKALRERL 67

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                +  P +  +  S DGTRKWL+R     + G   +ETV IP+ +R TLCVSSQVGC
Sbjct: 68  AAIAEVRPPPVESQHDSSDGTRKWLVR-----VDGGGLVETVLIPDGNRATLCVSSQVGC 122

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q   R+L+A EI+ QV LA +    F              GR ++N+VM
Sbjct: 123 SLDCSFCSTGKQGFQRDLSAAEIIGQVWLAINSYDAFKS----------GNGRVVTNVVM 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP + ++ E     LA+SLH
Sbjct: 173 MGMGEPLLNFDNVVTAMDLMMDDLGYGISKRRVTLSTSGVVPALDKLAEVSEASLAVSLH 232

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRDALNL 302
           A +++LRN LVP+NR+YP+  L+D+ R Y        R +T EY ++ G+ND P  A  L
Sbjct: 233 APNDELRNQLVPVNRRYPIAQLLDSARRYIDAQKDKKRVVTIEYTLMAGVNDQPDQAREL 292

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +L   P KINLIPFNP+P   Y       +  F + +  +G+   +RT RG DI AAC
Sbjct: 293 ATLLADFPCKINLIPFNPFPNSGYERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAAC 352

Query: 363 GQL-KSLSKRIPKVPRQE 379
           GQL   +  R  +  R  
Sbjct: 353 GQLVGDVVDRTRRSARHR 370


>gi|262371087|ref|ZP_06064409.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046]
 gi|262313973|gb|EEY95018.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046]
          Length = 411

 Score =  454 bits (1169), Expect = e-126,   Method: Composition-based stats.
 Identities = 165/391 (42%), Positives = 231/391 (59%), Gaps = 24/391 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N + K +L+GM R +LE+    +G      + R  Q+ KWI+   + DF  M++IS ++R
Sbjct: 26  NSVAKVNLLGMSRPQLEKFFEDMG----EKKFRAGQVMKWIHQFFVTDFAEMTNISGKLR 81

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG----TLC 117
             L +   I  PE+V +  S DGTRKW+ R      G    +ETV IP + R     TLC
Sbjct: 82  EKLEKLCEIKAPEVVHKNYSKDGTRKWVFRVGE---GEGSLVETVLIPAEHRSGLRRTLC 138

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +SSQVGC+L CSFC TG Q   R+L  +EI+ Q+ +A     +     + E        R
Sbjct: 139 ISSQVGCALDCSFCSTGKQGFQRDLNPDEIIGQLWVANYSYMEDVPVAERE--------R 190

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            ++N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V
Sbjct: 191 SVTNVVMMGMGEPLLNYDAVLSSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDV 250

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGIN 293
            LAISLHA +++LRN LVPIN+KYPL  LI AC+ Y       S  + +T EYVML G+N
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLDGVN 310

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D P  A  +IK+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  
Sbjct: 311 DHPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQT 370

Query: 354 RGLDILAACGQL-KSLSKRIPKVPRQEMQIT 383
           RG DI AACGQL   ++ R  +  + + ++ 
Sbjct: 371 RGDDIDAACGQLVGQVADRTRRAEQWKKKVA 401


>gi|83310223|ref|YP_420487.1| Fe-S-cluster redox protein [Magnetospirillum magneticum AMB-1]
 gi|82945064|dbj|BAE49928.1| Predicted Fe-S-cluster redox enzyme [Magnetospirillum magneticum
           AMB-1]
          Length = 546

 Score =  454 bits (1169), Expect = e-126,   Method: Composition-based stats.
 Identities = 195/370 (52%), Positives = 255/370 (68%), Gaps = 19/370 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +LIG+ R++L   +  IG        R  Q+W W+Y RG  DF  M+ IS+ +   L 
Sbjct: 176 KTNLIGLSRDQLIAEMASIG----EKPFRAKQLWHWMYNRGETDFAKMTSISKSMHGALA 231

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVG 123
           + + +  P +  E IS D TRKWLL+F         E ETVYIP+    RG +C+S+QVG
Sbjct: 232 ERYVVRRPGVTKELISADTTRKWLLKF-----DDGHEAETVYIPDADEERGAVCISTQVG 286

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTC FC+TGTQ LVRNL+A EI+ Q ++AR   G++P  +D         GR++SNIV
Sbjct: 287 CTLTCRFCHTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDD--------GGRQLSNIV 338

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NF+NV  +L IA D  G+  SKRRITLSTSG VP +   GE +GV LA+SL
Sbjct: 339 VMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKECGERLGVNLAVSL 398

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV++++R+ ++PIN+KYPL+ L+ ACR YPG SNARRITFEY+MLKGINDS  DA  L+
Sbjct: 399 HAVTDEIRDRIMPINKKYPLKELMQACREYPGASNARRITFEYIMLKGINDSAADARALL 458

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K++KG+PAK NLIPFNPWPG E+   D K    FS+ ++ +GYS+PIR PRG DILAACG
Sbjct: 459 KLVKGLPAKFNLIPFNPWPGSEFDTPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACG 518

Query: 364 QLKSLSKRIP 373
           QL+S S+R  
Sbjct: 519 QLRSESQRER 528


>gi|253988864|ref|YP_003040220.1| ribosomal RNA large subunit methyltransferase N [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780314|emb|CAQ83475.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 392

 Score =  454 bits (1169), Expect = e-126,   Method: Composition-based stats.
 Identities = 161/379 (42%), Positives = 219/379 (57%), Gaps = 22/379 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ +  + +G        R  Q+ KWIY     DF+ M+DI++ +R  L 
Sbjct: 25  KINLLDLDRKQMRQFFVDMG----EKPFRADQVMKWIYHYCYDDFEQMTDINKTLRAKLQ 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q   I  PE+ +E+ S DGT KW +           ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 81  QVAEIRAPEVAEEQRSADGTIKWAISVGD------QQVETVYIPEDDRATLCVSSQVGCA 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  S  R I+N+VMM
Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSSGRRPITNVVMM 184

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 185 GMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 244

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +E  +   R Y   SNA   R+T EYVML  INDS   A  L 
Sbjct: 245 PTDDIRDDIVPINRKYNIEQFLAGVRRYLAKSNANQGRVTVEYVMLDHINDSVEQAHQLA 304

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P+KINLIP+NP+PG  Y  S    I  F++ +   G+++ +R  RG DI AACG
Sbjct: 305 ECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFAKVLMGYGFTTIVRKTRGDDIDAACG 364

Query: 364 QLKSLSKRIPKVPRQEMQI 382
           QL        K   ++ Q+
Sbjct: 365 QLAGDVIDRTKRTLKKRQL 383


>gi|165976692|ref|YP_001652285.1| hypothetical protein APJL_1285 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|303250645|ref|ZP_07336842.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252906|ref|ZP_07534795.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307261750|ref|ZP_07543416.1| hypothetical protein appser12_13090 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263937|ref|ZP_07545541.1| hypothetical protein appser13_13460 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|205829706|sp|B0BQK6|RLMN_ACTPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|165876793|gb|ABY69841.1| hypothetical protein APJL_1285 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|302650633|gb|EFL80792.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859695|gb|EFM91719.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306868568|gb|EFN00379.1| hypothetical protein appser12_13090 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870802|gb|EFN02542.1| hypothetical protein appser13_13460 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 393

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 155/377 (41%), Positives = 218/377 (57%), Gaps = 22/377 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKINLMNLTRQEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++          +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP +  + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ ++PIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364

Query: 363 GQLKSLSKRIPKVPRQE 379
           GQL        K   ++
Sbjct: 365 GQLAGDVIDRTKRTMEK 381


>gi|307246190|ref|ZP_07528272.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255171|ref|ZP_07536989.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259608|ref|ZP_07541333.1| hypothetical protein appser11_14070 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853125|gb|EFM85348.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862044|gb|EFM94020.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866544|gb|EFM98407.1| hypothetical protein appser11_14070 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 393

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 155/377 (41%), Positives = 218/377 (57%), Gaps = 22/377 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKINLMNLTRKEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++          +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP +  + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ ++PIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364

Query: 363 GQLKSLSKRIPKVPRQE 379
           GQL        K   ++
Sbjct: 365 GQLAGDVIDRTKRTMEK 381


>gi|73541777|ref|YP_296297.1| hypothetical protein Reut_A2089 [Ralstonia eutropha JMP134]
 gi|123732898|sp|Q46ZI0|RLMN_RALEJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|72119190|gb|AAZ61453.1| Conserved hypothetical protein 48 [Ralstonia eutropha JMP134]
          Length = 384

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 154/378 (40%), Positives = 217/378 (57%), Gaps = 18/378 (4%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN L   +L+ +  + L     ++G        R  Q+ +WI+  G   F  MSD+++ +
Sbjct: 1   MNDL--VNLLDLDADALTAYCGELG----EKPFRARQLQRWIHQFGASRFDAMSDLAKSL 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L     I  P  + + +S DGTRKWLL      +G    +ETVYIPE++RGTLCVSS
Sbjct: 55  REKLATRAEIRSPAAITDNLSADGTRKWLL-----DVGNGNAVETVYIPEETRGTLCVSS 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNLT  EI+ Q+ +A   + +  G         P   R IS
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLWMAEFAMREQLGR-------GPKDDRVIS 162

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+ +++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALA 222

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR++LVP+N+KYPL  L+ ACR Y   +    ITFEY ML G+ND    A 
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+K++  +P K NLIPFNP+P      S+   I  F++ +  +G  + IR  RG DI A
Sbjct: 283 ELLKLVADVPCKFNLIPFNPFPESGLKRSNNDQIRRFAQVLMDAGIVTTIRKTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 343 ACGQLAGEVKDRTRLAER 360


>gi|46201028|ref|ZP_00207935.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum
           magnetotacticum MS-1]
          Length = 375

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 195/368 (52%), Positives = 257/368 (69%), Gaps = 19/368 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +LIG+ R++L   +  IG        R  Q+W W+Y RG  DF  M+ IS+ +   L 
Sbjct: 5   KINLIGLSRDQLIAEMAAIG----EKPFRAKQLWHWMYNRGETDFAKMTSISKSMHGALA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123
           + + +  P++  E IS D TRKWLL+F         E ETVYIP+  + RG +C+S+QVG
Sbjct: 61  ERYVVRRPQMTKELISADTTRKWLLKF-----DDGHEAETVYIPDADEDRGAVCISTQVG 115

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTC FC+TGTQ LVRNLTA EI+ Q ++AR   G++P  +D         GR++SNIV
Sbjct: 116 CTLTCRFCHTGTQLLVRNLTAAEIVGQFMVARDSYGEWPTPDD--------GGRQLSNIV 167

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NF+NV  +L IA D  G+  SKRRITLSTSG VP +   GE +GV LA+SL
Sbjct: 168 VMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKICGERLGVNLAVSL 227

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV++++R+ ++PIN+KYPL+ L+ ACR YPG SNARRITFEY+MLKG+NDS  DA  L+
Sbjct: 228 HAVTDEIRDRIMPINKKYPLKELMQACRDYPGASNARRITFEYIMLKGVNDSAADARALL 287

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K++KG+PAK NLIPFNPWPG E+   D K    FS+ ++ +GYS+PIR PRG DILAACG
Sbjct: 288 KLIKGLPAKFNLIPFNPWPGSEFETPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACG 347

Query: 364 QLKSLSKR 371
           QL+S S+R
Sbjct: 348 QLRSESQR 355


>gi|17545931|ref|NP_519333.1| hypothetical protein RSc1212 [Ralstonia solanacearum GMI1000]
 gi|81505540|sp|Q8Y032|RLMN_RALSO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|17428226|emb|CAD14914.1| conserved hypothetical protein 48 [Ralstonia solanacearum GMI1000]
          Length = 383

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 151/378 (39%), Positives = 219/378 (57%), Gaps = 18/378 (4%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN +   +L+    + L      +G        R  Q+ +WI+  G  DF  M+D+++ +
Sbjct: 1   MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    +I  P ++ + +S DGTRKWL+      +G    +ETVYIPE++RGTLCVSS
Sbjct: 55  REKLATRATIQAPAVISDHLSSDGTRKWLV-----DVGAGNAVETVYIPEETRGTLCVSS 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   +    G         P   R I+
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWMAEFAMRKQLGR-------GPKDDRVIT 162

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+ +++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSQDLPVALA 222

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR++LVP+N+KYPL  L+ ACR Y   +    ITFEY ML G+NDS   A 
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L++++  +P K NLIPFNP+P      S+ + I  FS+ +  +G  + IR  RG DI A
Sbjct: 283 ELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 343 ACGQLAGEVKDRTRLAER 360


>gi|312796090|ref|YP_004029012.1| radical SAM protein [Burkholderia rhizoxinica HKI 454]
 gi|312167865|emb|CBW74868.1| Radical SAM family enzyme [Burkholderia rhizoxinica HKI 454]
          Length = 391

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 153/378 (40%), Positives = 211/378 (55%), Gaps = 16/378 (4%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+      L      +G        R  Q+ +WI+  G+ DF  M+D+++ +
Sbjct: 13  MTMTDTVNLLDFDAAGLVAYCASLG----EKPFRARQLQRWIHHGGVSDFDAMTDLAKSL 68

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    SI +P ++ +  S DGTRKWLL      +G    +ETVYIPE+ RGTLCVSS
Sbjct: 69  RDKLKTRASIRHPAVLQDHTSADGTRKWLL-----DVGEGNAVETVYIPEQGRGTLCVSS 123

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL   EI+ Q+ +A   L    G        +    R I+
Sbjct: 124 QAGCAVNCRFCSTGKQGFSRNLGVGEIIGQLWMAEFALRAARGG-------LAPGERVIT 176

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL NFD V  ++ +  D      S+RR+TLSTSG VP I R+  E+ V LA
Sbjct: 177 NVVMMGMGEPLLNFDAVVPAMRLMLDDHAYGLSRRRVTLSTSGVVPMIDRLAAELPVALA 236

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+NRKYPL  L+ AC  Y  ++    ITFEY ML G+ND    A 
Sbjct: 237 VSLHAPNDALRDELVPLNRKYPLAELMAACNRYLRVAPRDFITFEYCMLDGVNDRDEHAR 296

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    L S  + I  F++ +  +G  + +R  RG DI A
Sbjct: 297 QLLALTRDVPCKFNLIPFNPFPESGLLRSHPERIKQFAQILIDAGVVTTVRRTRGDDIDA 356

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    +   +V  +
Sbjct: 357 ACGQLAGEVRDRTRVAER 374


>gi|307250523|ref|ZP_07532468.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307257327|ref|ZP_07539097.1| hypothetical protein appser10_13250 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306857465|gb|EFM89576.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306864177|gb|EFM96090.1| hypothetical protein appser10_13250 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 393

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 155/377 (41%), Positives = 218/377 (57%), Gaps = 22/377 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKINLMNLTRQEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++          +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGI----------TGVRPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP +  + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ ++PIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364

Query: 363 GQLKSLSKRIPKVPRQE 379
           GQL        K   ++
Sbjct: 365 GQLAGDVIDRTKRTMEK 381


>gi|32035054|ref|ZP_00135120.1| COG0820: Predicted Fe-S-cluster redox enzyme [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208740|ref|YP_001053965.1| hypothetical protein APL_1274 [Actinobacillus pleuropneumoniae L20]
 gi|205829705|sp|A3N1S4|RLMN_ACTP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|126097532|gb|ABN74360.1| hypothetical protein APL_1274 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 393

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 155/377 (41%), Positives = 218/377 (57%), Gaps = 22/377 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKINLMNLTRKEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++          +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGI----------TGVRPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP +  + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ ++PIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364

Query: 363 GQLKSLSKRIPKVPRQE 379
           GQL        K   ++
Sbjct: 365 GQLAGDVIDRTKRTMEK 381


>gi|325577793|ref|ZP_08148068.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160538|gb|EGC72664.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC
           33392]
          Length = 382

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 156/382 (40%), Positives = 220/382 (57%), Gaps = 24/382 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
              KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R
Sbjct: 10  TNTKKINLMDLTRQQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLR 65

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L     I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQ
Sbjct: 66  EKLKAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQ 119

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N
Sbjct: 120 VGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITN 169

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + ++I V LAI
Sbjct: 170 VVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMLRDKIDVALAI 229

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA +++LR+ ++PIN+KY + ML+D+   Y  +SNA   ++T EYV+L  +ND    A
Sbjct: 230 SLHAPNDELRDEIMPINKKYNIRMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDGTEHA 289

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L K+LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI 
Sbjct: 290 HQLAKVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDID 349

Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381
           AACGQL      I +  R  M+
Sbjct: 350 AACGQLAGDV--IDRTKRTAMK 369


>gi|221133865|ref|ZP_03560170.1| hypothetical protein GHTCC_02964 [Glaciecola sp. HTCC2999]
          Length = 389

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/380 (42%), Positives = 222/380 (58%), Gaps = 22/380 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R  + E L  IG        R  QI +WIY  G+     MS+I+++++  L
Sbjct: 18  KKTNLLDLTRSGMREFLSSIG----EKPFRADQIMQWIYHHGVSSVDEMSNINKQLKAKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N H  I+ PEI  ++ + DGT K+ L        G  E+E V+IPE  R TLCVSSQVGC
Sbjct: 74  NTHAEIVAPEIAYQQNATDGTIKFALTLN-----GGQEVEAVWIPETDRATLCVSSQVGC 128

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL+  EI+ QV    + +G          +   +  R I+N+VM
Sbjct: 129 ALECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIG----------LSKDTAKRPITNVVM 178

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ +  D  G   SKRR+TLSTSG VP +  +G++I V LAISLH
Sbjct: 179 MGMGEPLLNLKNVVPAMELMMDDYGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLH 238

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNL 302
           A ++ LR+ +VP+N+KY +E  +   R Y   S  N  ++T EYVML  INDS   A  L
Sbjct: 239 APNDTLRDEIVPVNKKYNIETFLAGVRRYLDKSKANQGKVTVEYVMLSHINDSTDQAHEL 298

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+L G P KINLIPFNP+PG  Y CS    I  FS+ +  +GY+  +R  RG DI AAC
Sbjct: 299 AKVLSGTPCKINLIPFNPYPGSPYTCSSNSRIDRFSKVLMAAGYTVMVRKTRGDDIDAAC 358

Query: 363 GQL-KSLSKRIPKVPRQEMQ 381
           GQL   +  R  ++ +++++
Sbjct: 359 GQLVGDVVDRTKRMLKKQLK 378


>gi|94311047|ref|YP_584257.1| hypothetical protein Rmet_2109 [Cupriavidus metallidurans CH34]
 gi|123260051|sp|Q1LLI8|RLMN_RALME RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|93354899|gb|ABF08988.1| Radical SAM enzyme, Cfr family [Cupriavidus metallidurans CH34]
          Length = 384

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 151/378 (39%), Positives = 214/378 (56%), Gaps = 18/378 (4%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN L   +L+ +  + L     ++G        R  Q+ +WI+  G   F  M+D+++ +
Sbjct: 1   MNNL--VNLLDLDADALTAYCGELG----EKPFRARQLQRWIHQFGASHFDAMTDLAKSL 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L     I  P  + +  S DGTRKWLL      +G    +ETVYIPE +RGTLCVSS
Sbjct: 55  REKLATRAEIRSPAAISDHTSSDGTRKWLL-----DVGAGNAVETVYIPEDTRGTLCVSS 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   +         +    P   R IS
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMR-------AQLGRGPKDERVIS 162

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+ +++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALA 222

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR++LVP+NRKYPL  L+ ACR Y   +    ITFEY ML G+ND    A 
Sbjct: 223 VSLHASNDALRDVLVPLNRKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+K++  +P K NLIPFNP+P      S+ + I  F++ +  +G  + IR  RG DI A
Sbjct: 283 ELLKLVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFAQVLMDAGIVTTIRKTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL        ++  +
Sbjct: 343 ACGQLAGEVMDRTRLAER 360


>gi|301154683|emb|CBW14146.1| predicted enzyme [Haemophilus parainfluenzae T3T1]
          Length = 382

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 221/382 (57%), Gaps = 24/382 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
              KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R
Sbjct: 10  TNTKKINLMDLTRQQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLR 65

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L     I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQ
Sbjct: 66  EKLKAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQ 119

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N
Sbjct: 120 VGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITN 169

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + ++I V LAI
Sbjct: 170 VVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMLRDKIDVALAI 229

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           SLHA +++LR+ ++PIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A
Sbjct: 230 SLHAPNDELRDEIMPINKKYNIKMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDGTEHA 289

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI 
Sbjct: 290 HQLAQVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDID 349

Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381
           AACGQL      I +  R  M+
Sbjct: 350 AACGQLAGDV--IDRTKRTAMK 369


>gi|300691809|ref|YP_003752804.1| hypothetical protein RPSI07_2165 [Ralstonia solanacearum PSI07]
 gi|299078869|emb|CBJ51530.1| conserved protein of unknown function, predicted radical SAM enzyme
           [Ralstonia solanacearum PSI07]
          Length = 383

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 151/378 (39%), Positives = 218/378 (57%), Gaps = 18/378 (4%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN +   +L+    + L      +G        R  Q+ +WI+  G  DF  M+D+++ +
Sbjct: 1   MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    +I  P ++ + +S DGTRKWL+      +G    +ETVYIPE++RGTLCVSS
Sbjct: 55  REKLATRATIQAPAVISDHLSSDGTRKWLV-----DVGAGNAVETVYIPEETRGTLCVSS 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   +    G         P   R I+
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAVRKQLGR-------GPKDDRVIT 162

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+  ++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSRDLPVALA 222

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR++LVP+N+KYPL  L+ ACR Y   +    ITFEY ML G+NDS   A 
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L++++  +P K NLIPFNP+P      S+ + I  FS+ +  +G  + IR  RG DI A
Sbjct: 283 ELLRVIADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 343 ACGQLAGEVKDRTRLAER 360


>gi|50083794|ref|YP_045304.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. ADP1]
 gi|81393776|sp|Q6FEM6|RLMN_ACIAD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|49529770|emb|CAG67482.1| conserved hypothetical protein; putative Fe-S-cluster redox enzyme
           [Acinetobacter sp. ADP1]
          Length = 414

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 172/392 (43%), Positives = 226/392 (57%), Gaps = 32/392 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM R ELE+   +IG      + R  QI KWI+   + D   M++IS ++R  L 
Sbjct: 33  KVNLLGMSRIELEQFFEQIG----EKKFRAGQIMKWIHQYFVTDLAEMTNISGKLRTKLE 88

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSSQ 121
           Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +     R TLC+SSQ
Sbjct: 89  QVCEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISSQ 145

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L CSFC TG Q   R+LT  EI+ Q+ +A            +E + +    R ++N
Sbjct: 146 VGCALDCSFCSTGKQGFQRDLTPAEIIGQLWVANQSY--------VEDVPVAERTRAVTN 197

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL NF  V  S+SI  D      SKRR+TLSTSG VP I ++ EE+ V LAI
Sbjct: 198 VVMMGMGEPLLNFKPVVHSMSIMLDDYAYGMSKRRVTLSTSGVVPMIDKLAEELDVALAI 257

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSPR 297
           SLHA +N LR+ LVPIN+KYPLE LI A + Y       S  + +T EYVML G+ND P 
Sbjct: 258 SLHAPNNPLRDELVPINKKYPLEQLIAAAQRYITKDGNESARKHVTIEYVMLDGVNDHPE 317

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L+K+LK +P+KINLIPFNP+P   Y  S +  I+ F + +  +G+   IR  RG D
Sbjct: 318 HAQQLVKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIMAFQKTLSDAGFVCTIRQTRGDD 377

Query: 358 ILAACGQL---------KSLSKRIPKVPRQEM 380
           I AACGQL         ++   +     RQE+
Sbjct: 378 IDAACGQLVGQVADRTRRAEQWKKKVAERQEI 409


>gi|83747944|ref|ZP_00944975.1| Radical SAM family enzyme [Ralstonia solanacearum UW551]
 gi|207743447|ref|YP_002259839.1| hypothetical protein 48 [Ralstonia solanacearum IPO1609]
 gi|83725362|gb|EAP72509.1| Radical SAM family enzyme [Ralstonia solanacearum UW551]
 gi|206594844|emb|CAQ61771.1| conserved hypothetical protein 48 [Ralstonia solanacearum IPO1609]
          Length = 383

 Score =  453 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 151/378 (39%), Positives = 218/378 (57%), Gaps = 18/378 (4%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN +   +L+    + L      +G        R  Q+ +WI+  G  DF  M+D+++ +
Sbjct: 1   MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    +I  P ++ + +S DGTRKWL+      +G    +ETVYIPE++RGTLCVSS
Sbjct: 55  REKLATRATIQAPAVISDHLSSDGTRKWLV-----DVGAGNAVETVYIPEETRGTLCVSS 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   +    G         P   R I+
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWMAEFAMRKQLGR-------GPKDDRVIT 162

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+  ++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSRDLPVALA 222

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR++LVP+N+KYPL  L+ ACR Y   +    ITFEY ML G+NDS   A 
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L++++  +P K NLIPFNP+P      S+ + I  FS+ +  +G  + IR  RG DI A
Sbjct: 283 ELLRVIADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 343 ACGQLAGEVKDRTRLAER 360


>gi|295676905|ref|YP_003605429.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1002]
 gi|295436748|gb|ADG15918.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1002]
          Length = 383

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 150/384 (39%), Positives = 219/384 (57%), Gaps = 10/384 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+ +  + L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSSPSVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    +I  P +V + IS DGTRKWL+      +G    +ETVYIPE++RGTLCVSS
Sbjct: 57  REKLKGRATITMPGVVSDHISSDGTRKWLI-----DVGNGNAVETVYIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
           Q GC++ C FC TG Q   RNLT  EI+ Q+ +A   L    G      +     G ++ 
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASRGDAGGRAIGGDGKGERVV 171

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADVPVAL 231

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA ++ LR++LVP+N+KYPL  L+ AC  Y  ++    ITFEY ML G+NDS   A
Sbjct: 232 AVSLHASNDALRDVLVPLNKKYPLRELMAACERYLKVAPRDFITFEYCMLDGVNDSEAHA 291

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI 
Sbjct: 292 RELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDID 351

Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
           AACGQL    K   ++  +  +  
Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375


>gi|88858483|ref|ZP_01133125.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster
           domain [Pseudoalteromonas tunicata D2]
 gi|88820100|gb|EAR29913.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster
           domain [Pseudoalteromonas tunicata D2]
          Length = 392

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 165/382 (43%), Positives = 228/382 (59%), Gaps = 21/382 (5%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
              KK +L+ + RE + E  +  G        R  Q+ KWIY  G+ +F  MS+I+++++
Sbjct: 15  TTKKKINLLDLNREGMRELFVSFG----EKPFRGDQVMKWIYHFGVDNFDEMSNINKKLK 70

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L +   I+ PEI  ++++ DGT K+ L        G  E+ETV+IPEK R TLCVSSQ
Sbjct: 71  ARLERECEIVAPEISAKQVAADGTIKYALLLE-----GGQEVETVWIPEKERATLCVSSQ 125

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C+FC T  Q   RNL   EI+ QV      +G          +   S  R ++N
Sbjct: 126 VGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG----------LYGDSTRRPVTN 175

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N +NV  ++ +  D      SKRR+TLSTSG VP +  + E I V LAI
Sbjct: 176 VVMMGMGEPLLNINNVVPAMELMMDDWAFGLSKRRVTLSTSGVVPALDILKERIDVALAI 235

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDAL 300
           SLHA  N LR++LVPIN+KYP+E  + ACR Y   S A + +T EYVML GINDS   A 
Sbjct: 236 SLHAPDNALRDVLVPINKKYPIEEFLAACRRYIDGSKANKDVTVEYVMLDGINDSMEQAH 295

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L++ LKG P+K+NLIPFNP+PG EY  S    I  FS+ ++ +G +  +R  RG DI A
Sbjct: 296 QLVETLKGTPSKVNLIPFNPFPGNEYGRSSNSRIDRFSKILQAAGITCIVRRTRGDDIDA 355

Query: 361 ACGQL-KSLSKRIPKVPRQEMQ 381
           ACGQL   +  R  ++ ++++Q
Sbjct: 356 ACGQLVGDVVDRTKRLAKRQLQ 377


>gi|311105357|ref|YP_003978210.1| radical SAM superfamily protein 2 [Achromobacter xylosoxidans A8]
 gi|310760046|gb|ADP15495.1| radical SAM superfamily protein 2 [Achromobacter xylosoxidans A8]
          Length = 384

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 151/380 (39%), Positives = 217/380 (57%), Gaps = 9/380 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  +++ +L+G+    L E + K G        R  Q+ +W++ RG   F  M+D++++ 
Sbjct: 1   METVERINLLGLDGSALSELVGKWG----GKPFRARQLQRWMHQRGADSFDAMTDLARDF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L QH  I    +  E+ S DGTRKWL       +G    IETV+IPE  RGTLC+SS
Sbjct: 57  RGQLAQHCRIEALPVNIEQRSTDGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG Q   RNL   EI+ Q+  A+ +L    G   +E        R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATEDTRVIS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  +L +  D      S+RR+T+STSG VP + R+ ++  V LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL+ L+ AC  Y   +    ITFEY ML GIND+ + A 
Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAK 291

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI+I + +  K+NLIPFNP+P      S+   +  F++ +  +G  + +R  RG DI A
Sbjct: 292 ELIQIARQLRCKLNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDA 351

Query: 361 ACGQLKSLSKRIPKVPRQEM 380
           ACGQL    +   ++  +  
Sbjct: 352 ACGQLAGEVRDRTRITERNA 371


>gi|254283024|ref|ZP_04957992.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
 gi|219679227|gb|EED35576.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
          Length = 380

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 157/382 (41%), Positives = 215/382 (56%), Gaps = 22/382 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM R ++E     +G      R R  Q+ KWI+  G+ D + M+ + + +R  L+
Sbjct: 16  KVNLLGMSRAQMEVFFTDLG----EKRFRAGQVMKWIHHHGVSDIEAMTTLGKALRERLS 71

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PEI D+K S DGTRKW +R     + G   +E V IPE SR TLCVSSQVGCS
Sbjct: 72  SIAEVRPPEIADQKDSADGTRKWAIR-----VDGGALVEAVLIPEGSRATLCVSSQVGCS 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC TG Q   R+LT+ EI+ QV LA      F   +          GR ++N+VMM
Sbjct: 127 LDCKFCSTGKQGFQRDLTSAEIIGQVWLAIKSYDAFQSGK----------GRVVTNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  S+S+ +D      SKRR+TLSTSG VP + ++ E   V LAISLH 
Sbjct: 177 GMGEPLLNFDNVVSSMSLMTDDWAYGLSKRRVTLSTSGVVPALDKLAECSDVSLAISLHG 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRDALNLI 303
            ++++RN +VPIN++YP+  L+ + R+Y        R +T EY +L G+ND    A  L 
Sbjct: 237 PTDEIRNRIVPINKRYPIAELLRSARNYIDAQSDTKRVVTIEYTLLAGVNDQVEHARQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LK  P KINLIPFN +P   +       +  F + +  +GY   +RT RG DI AACG
Sbjct: 297 VLLKDFPCKINLIPFNDFPHSGFTRPSGNAVSRFWQVLIDAGYVVTVRTTRGDDIDAACG 356

Query: 364 QLKSL-SKRIPKVPRQEMQITG 384
           QL      R  +  R   ++  
Sbjct: 357 QLVGEVVDRTRRAQRHRSRLEA 378


>gi|319775768|ref|YP_004138256.1| Fe-S-cluster redox enzyme [Haemophilus influenzae F3047]
 gi|317450359|emb|CBY86575.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae F3047]
          Length = 383

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 159/379 (41%), Positives = 219/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 354 GQLAGDV--IDRTKRTAMK 370


>gi|205829855|sp|Q2W897|RLMN_MAGMM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 456

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 195/370 (52%), Positives = 255/370 (68%), Gaps = 19/370 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +LIG+ R++L   +  IG        R  Q+W W+Y RG  DF  M+ IS+ +   L 
Sbjct: 86  KTNLIGLSRDQLIAEMASIG----EKPFRAKQLWHWMYNRGETDFAKMTSISKSMHGALA 141

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVG 123
           + + +  P +  E IS D TRKWLL+F         E ETVYIP+    RG +C+S+QVG
Sbjct: 142 ERYVVRRPGVTKELISADTTRKWLLKF-----DDGHEAETVYIPDADEERGAVCISTQVG 196

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTC FC+TGTQ LVRNL+A EI+ Q ++AR   G++P  +D         GR++SNIV
Sbjct: 197 CTLTCRFCHTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDD--------GGRQLSNIV 248

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NF+NV  +L IA D  G+  SKRRITLSTSG VP +   GE +GV LA+SL
Sbjct: 249 VMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKECGERLGVNLAVSL 308

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV++++R+ ++PIN+KYPL+ L+ ACR YPG SNARRITFEY+MLKGINDS  DA  L+
Sbjct: 309 HAVTDEIRDRIMPINKKYPLKELMQACREYPGASNARRITFEYIMLKGINDSAADARALL 368

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K++KG+PAK NLIPFNPWPG E+   D K    FS+ ++ +GYS+PIR PRG DILAACG
Sbjct: 369 KLVKGLPAKFNLIPFNPWPGSEFDTPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACG 428

Query: 364 QLKSLSKRIP 373
           QL+S S+R  
Sbjct: 429 QLRSESQRER 438


>gi|296113393|ref|YP_003627331.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
 gi|295921087|gb|ADG61438.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
 gi|326559237|gb|EGE09668.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1]
 gi|326560775|gb|EGE11142.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1]
 gi|326563516|gb|EGE13775.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1]
 gi|326570119|gb|EGE20164.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8]
 gi|326570857|gb|EGE20881.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7]
 gi|326574406|gb|EGE24348.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1]
 gi|326576000|gb|EGE25923.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72]
 gi|326576412|gb|EGE26321.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E]
          Length = 395

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 161/382 (42%), Positives = 226/382 (59%), Gaps = 29/382 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+GM ++EL    + +G        R +Q+ KWIY  G+ DF  M++IS++++H L
Sbjct: 18  KKVNLLGMSKDELSAFFVSLG----EKSFRATQVMKWIYQFGVTDFFEMTNISKKLQHKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVS 119
           ++   ++ P +  ++ S DGTRKW+       + G   +ETV IP        R TLC+S
Sbjct: 74  HEVACVVPPTVKYKEFSQDGTRKWVFE-----VAGGSLVETVLIPADDGKQFGRKTLCIS 128

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC+L CSFC TG Q   R+LT  EI+ Q+ +A     +     + E         ++
Sbjct: 129 SQVGCALDCSFCSTGKQGFERDLTPSEIIGQLWVANQSYMENVPPTEREN--------RV 180

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+D V  S+S+  D      SKRR+TLSTSG VP +  + ++I V L
Sbjct: 181 TNVVMMGMGEPLLNYDPVVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDIDVAL 240

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP---GLSNARRITFEYVMLKGINDSP 296
           AISLHA +++LRN LVPIN+KYPL+ LI A + Y       + + IT EYVML G+NDS 
Sbjct: 241 AISLHAPNDELRNELVPINKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDSD 300

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L+ +LK +P+KINLIPFNP+P   Y  S    I  FS  + ++G+   IR  RG 
Sbjct: 301 EHAHQLVDLLKDLPSKINLIPFNPFPHAPYGRSSNNRIHAFSHILNQAGFVCTIRQTRGD 360

Query: 357 DILAACGQL----KSLSKRIPK 374
           DI AACGQL       ++R  K
Sbjct: 361 DIDAACGQLVGQVADRTRRAKK 382


>gi|319896694|ref|YP_004134887.1| fe-s-cluster redox enzyme [Haemophilus influenzae F3031]
 gi|317432196|emb|CBY80548.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae F3031]
          Length = 383

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 159/379 (41%), Positives = 219/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 354 GQLAGDV--IDRTKRTAMK 370


>gi|119505391|ref|ZP_01627465.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
           HTCC2080]
 gi|119458846|gb|EAW39947.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
           HTCC2080]
          Length = 388

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 156/375 (41%), Positives = 223/375 (59%), Gaps = 22/375 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ R++LE+    +G      R R  Q+ KW++ +G+ DF  MS++ + +R  L 
Sbjct: 16  KVNLLGLSRQQLEDFFTDLG----EKRFRAQQVMKWMHHQGVIDFAAMSNLGKGLREKLE 71

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              +I  PEI D++ S DGTRKW +R     + G   +E V IPE  R TLCVSSQVGCS
Sbjct: 72  TLATITPPEIADQQDSADGTRKWAVR-----VAGGALVEAVLIPEAGRATLCVSSQVGCS 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC TG Q   R+LTA EI+ QV LA +    +   +          GR ++N+VMM
Sbjct: 127 LDCKFCSTGKQGFQRDLTAAEIIGQVWLAINSYSGWQSGK----------GRIVTNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++S+ +D +    SKR++TLSTSG VP + R+ E   V LA+SLHA
Sbjct: 177 GMGEPLLNFDNVVSAMSLMTDDLAYGLSKRKVTLSTSGVVPALDRLAEFSDVSLAVSLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRI-TFEYVMLKGINDSPRDALNLI 303
            ++++RN +VPINR+YP++ L+ + + Y    S+ +R+ T EY +L G+ND P  A  L 
Sbjct: 237 PNDEIRNKIVPINRRYPIQQLLQSAKSYIDAQSDRKRVVTIEYTLLAGVNDQPEHARELS 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LK  P KINLIPFN +P   +       +  F + +  +G+   +R+ RG DI AACG
Sbjct: 297 TLLKDFPCKINLIPFNHFPNSGFDRPSGNAVSRFWQVLVDAGFIVTVRSTRGDDIDAACG 356

Query: 364 QLKSL-SKRIPKVPR 377
           QL      R  +  R
Sbjct: 357 QLVGEVVDRTRRSER 371


>gi|238020955|ref|ZP_04601381.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
 gi|237867935|gb|EEP68941.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
          Length = 366

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 157/365 (43%), Positives = 216/365 (59%), Gaps = 20/365 (5%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
            +   ++G        R  Q+ +WI+  G + F  M+D+++ +R  L  +  I  P ++ 
Sbjct: 14  TDHFAQMG----EKPFRAKQVMRWIHQSGAQTFDEMTDLAKALRAKLEDNAVIGIPALMT 69

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
            + S DGTRKWLL      +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q 
Sbjct: 70  SQESRDGTRKWLL-----DVGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQG 124

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
             RNLTA EI+ Q+  A   LG           V P   R ISN+VMMGMGEP+ N+DNV
Sbjct: 125 FNRNLTAAEIIGQLWWANKALG-----------VTPKNERVISNVVMMGMGEPMANYDNV 173

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257
             +LSI  D  G   S+RR+T+STSG VP + R+ +++ V LA+SLHA ++ +R+ +VP+
Sbjct: 174 ITALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKDDMPVALAVSLHASNDKVRDEIVPL 233

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
           N+KYPL+ L+ AC  Y   +    ITFEYVML GIND P  A  L++++K  P K NLIP
Sbjct: 234 NKKYPLKELMAACNRYLAKAPRDFITFEYVMLDGINDKPEHARELVQLVKDTPCKFNLIP 293

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
           FNP+P   Y  S  K+I  F E +  +   + +R  RG DI AACGQL    +   K   
Sbjct: 294 FNPFPNSGYERSSNKNINIFKEILMEADLVTTVRKTRGDDIDAACGQLAGQVQDKTKRQA 353

Query: 378 QEMQI 382
           +  QI
Sbjct: 354 KWQQI 358


>gi|299067263|emb|CBJ38460.1| conserved protein of unknown function, predicted radical SAM enzyme
           [Ralstonia solanacearum CMR15]
          Length = 383

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 151/378 (39%), Positives = 218/378 (57%), Gaps = 18/378 (4%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN +   +L+    + L      +G        R  Q+ +WI+  G  DF  M+D+++ +
Sbjct: 1   MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    +I  P ++ + +S DGTRKWL+      +G    +ETVYIPE++RGTLCVSS
Sbjct: 55  REKLATRATIQAPAVISDNLSSDGTRKWLV-----DVGAGNAVETVYIPEETRGTLCVSS 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   +    G         P   R I+
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWMAEFAMRKQLGR-------GPKDDRVIT 162

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+  ++ V LA
Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSHDLPVALA 222

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR++LVP+N+KYPL  L+ ACR Y   +    ITFEY ML G+NDS   A 
Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELVAACRRYLEFAPRDFITFEYCMLDGVNDSVEHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L++++  +P K NLIPFNP+P      S+ + I  FS+ +  +G  + IR  RG DI A
Sbjct: 283 ELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 343 ACGQLAGEVKDRTRLAER 360


>gi|88703674|ref|ZP_01101390.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
 gi|88702388|gb|EAQ99491.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
          Length = 381

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 156/379 (41%), Positives = 216/379 (56%), Gaps = 22/379 (5%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K +L GM R +LE   L++G      R R  Q+ KW++ +G  DF  MS++ + +R  
Sbjct: 11  VEKVNLFGMSRTQLEAFFLEMG----EKRFRAQQLMKWMHHQGECDFSAMSNLGKALRER 66

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+    +  P +  +  S DGTRKWL+      + G   +ETV IP+ +R TLCVSSQVG
Sbjct: 67  LSAIAEVRPPVVESQHDSSDGTRKWLV-----HVDGGGLVETVLIPDGNRATLCVSSQVG 121

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL CSFC TG Q   R+L+A EI+ QV LA      F              GR ++N+V
Sbjct: 122 CSLDCSFCSTGKQGFQRDLSAAEIIGQVWLAIKSYDAFQS----------GNGRVVTNVV 171

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV  ++++  D +G   SKRR+TLSTSG VP + ++ E     LA+SL
Sbjct: 172 MMGMGEPLLNFDNVVTAMNLMMDDLGYGISKRRVTLSTSGVVPALDKLAEVSEASLAVSL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRDALN 301
           HA +++LRN LVP+NR+YP+  L+ + + Y        R +T EY ++ GIND P  A  
Sbjct: 232 HAPNDELRNQLVPVNRRYPIAQLLASAQRYIDAQKDKKRVVTIEYTLMAGINDQPEQARE 291

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +L   P KINLIPFNP+P   Y       +  F + +  +G+   +RT RG DI AA
Sbjct: 292 LALLLADFPCKINLIPFNPFPNSGYERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAA 351

Query: 362 CGQLKSL-SKRIPKVPRQE 379
           CGQL      R  +  R  
Sbjct: 352 CGQLVGEVVDRTRRSARHR 370


>gi|254499335|ref|ZP_05112006.1| radical SAM protein [Legionella drancourtii LLAP12]
 gi|254351440|gb|EET10304.1| radical SAM protein [Legionella drancourtii LLAP12]
          Length = 378

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 168/374 (44%), Positives = 226/374 (60%), Gaps = 20/374 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+    +++ E L   G        R  QI +WI+  G+ DF  M+++ + +R  L
Sbjct: 4   QKVNLLNYNYQQMRELLSSWG----EQPYRAQQIIQWIHQSGLVDFAQMTNLGKALREKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +Q   I  PEIV  + S DGT KWLL+           IETV+IPE +RGTLCVSSQVGC
Sbjct: 60  SQLSYIKVPEIVTCQKSSDGTHKWLLKLDC-----GNCIETVFIPEANRGTLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC T  Q   RNL+  EI+ QV LA   L    G  D          ++++N+VM
Sbjct: 115 ALNCSFCSTAKQGFNRNLSTAEIIGQVWLAVRELSTNQGVHD----------KRLTNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  +++I  D      SKRR+TLSTSG +P++ R+ +   V LA+SLH
Sbjct: 165 MGMGEPLLNFDNVVSAMNIMMDDFAYGLSKRRVTLSTSGVLPDLERLRQVSPVALAVSLH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++LRN LVPIN+KYPL  L+  C+ Y      R++TFEYVMLKG+ND P  A  LIK
Sbjct: 225 APNDELRNELVPINKKYPLAQLMALCKIYFKDEPRRKVTFEYVMLKGVNDQPEHATQLIK 284

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ +PAK+NLIPFNP+P  +Y  S Q  I  F + +  +G ++  R  RG DI AACGQ
Sbjct: 285 LLRDVPAKVNLIPFNPFPMTQYQRSSQAAIDAFRDKLIANGINTITRKTRGDDIDAACGQ 344

Query: 365 LKSLSK-RIPKVPR 377
           L    K R  +  R
Sbjct: 345 LAGEVKDRTSRSQR 358


>gi|254490112|ref|ZP_05103304.1| radical SAM enzyme, Cfr family [Methylophaga thiooxidans DMS010]
 gi|224464700|gb|EEF80957.1| radical SAM enzyme, Cfr family [Methylophaga thiooxydans DMS010]
          Length = 367

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 164/381 (43%), Positives = 233/381 (61%), Gaps = 24/381 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +  +L+G+  + LE   +++G        R  Q+ +WI+   + DF  M+++S+ +R 
Sbjct: 1   MTQSTNLLGLDLKGLEAFFVELG----EKPFRARQLLQWIHKYRVVDFAEMTNLSKALRE 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  PE++ E IS DGTRKW+++           IETV+IPE  RGTLCVSSQV
Sbjct: 57  KLQAVSDIRLPEVLHEHISTDGTRKWIIKLSC-----GNAIETVFIPEGGRGTLCVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+LTC+FC T  Q   RNL A EI+ Q+ +A   LG             P   R ++N+
Sbjct: 112 GCALTCTFCSTAQQGFNRNLDAAEIIAQLWIANEALGKD-----------PKGNRVVTNV 160

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N++NV  ++++  D  G   S RR+TLSTSG VP I ++ E+  V LAIS
Sbjct: 161 VMMGMGEPLANYNNVVTAMNLMRDDYGYGISWRRLTLSTSGIVPMIDKLREDCHVSLAIS 220

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +++LR+ +VPIN+KYP++ L+ AC+ Y      R IT EYVML GINDS +DA +L
Sbjct: 221 LHAANDELRDQIVPINQKYPIKELLAACKRYVVGQQRRHITVEYVMLDGINDSMQDAKDL 280

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           ++ILK +P KIN+IPFNP+PG +Y CS +  I  F   +   G  + +R  RG DI+AAC
Sbjct: 281 VRILKDLPTKINMIPFNPFPGTDYTCSSRNQIKRFQNYLIEQGMVATVRKTRGDDIVAAC 340

Query: 363 GQLKS----LSKRIPKVPRQE 379
           GQL       S+R  ++ +Q+
Sbjct: 341 GQLAGEVQDKSRRAERMAKQQ 361


>gi|92114968|ref|YP_574896.1| hypothetical protein Csal_2851 [Chromohalobacter salexigens DSM
           3043]
 gi|123387343|sp|Q1QTL1|RLMN_CHRSD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|91798058|gb|ABE60197.1| 23S rRNA m(2)A-2503 methyltransferase [Chromohalobacter salexigens
           DSM 3043]
          Length = 375

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/380 (42%), Positives = 225/380 (59%), Gaps = 22/380 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            + +L+G+ REE+E   + +G      + R +Q+ KWI+  G  DF  M+++S+ +R  L
Sbjct: 8   PRTNLLGLTREEMESFFVSLG----EKKFRAAQVMKWIHHEGCADFASMTNLSKALRTRL 63

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQV 122
            +   I  P +V E  S DGTRKW+L            +ETV IP +   R TLCVSSQV
Sbjct: 64  EELAEIRGPRVVYEGTSQDGTRKWVLEVED-----GSYVETVLIPAEGGKRRTLCVSSQV 118

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GCSL CSFC TG Q   RNLT+ EI+ QV +A +  G              +  R ++N+
Sbjct: 119 GCSLDCSFCSTGKQGFQRNLTSAEIIGQVWVASNSFG----------ARRDTTNRPVTNV 168

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N+DNV  ++ +  D  G   SKRR+TLSTSG VP + ++G+E+ V LA+S
Sbjct: 169 VMMGMGEPLLNYDNVVPAMKLMLDDNGYGLSKRRVTLSTSGVVPKLDQLGDELDVSLAVS 228

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALN 301
           LHA +++LRN LVP+NRKY +  L+DACR Y    +  R+ T EY ++K +ND    A  
Sbjct: 229 LHAANDELRNELVPLNRKYNIATLLDACRRYLAKCDDTRMLTIEYTLIKDVNDQQHHAEE 288

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +L  +P+KINLIPFNP+P   Y    +  ++ F + +   GY++ +RT RG DI AA
Sbjct: 289 LAALLADLPSKINLIPFNPFPHSGYEKPSRNQVMRFQQWLYDLGYTALVRTTRGDDIDAA 348

Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
           CGQL    K   K   + +Q
Sbjct: 349 CGQLVGRVKDRTKRHERYIQ 368


>gi|315634916|ref|ZP_07890198.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393]
 gi|315476468|gb|EFU67218.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393]
          Length = 384

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 153/378 (40%), Positives = 216/378 (57%), Gaps = 23/378 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R ++ E   ++G        R  Q+ KWIY  G  +F  M+++++++R  L
Sbjct: 16  KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKKLREKL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC
Sbjct: 72  KSVAEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 126 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 175

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 176 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 235

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VP+N+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 236 APNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVEHAHQL 295

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G +  +R  RG DI AAC
Sbjct: 296 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAAC 355

Query: 363 GQLKSLS-KRIPKVPRQE 379
           GQL      R  +  +++
Sbjct: 356 GQLAGDVIDRTKRTAQKK 373


>gi|37525329|ref|NP_928673.1| hypothetical protein plu1373 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81419944|sp|Q7N709|RLMN_PHOLL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|36784756|emb|CAE13666.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 392

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/377 (42%), Positives = 218/377 (57%), Gaps = 23/377 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ +  + +G        R  Q+ KWIY     DF+ M+DI++ +R  L 
Sbjct: 25  KINLLDLNRKQMRQFFIDMG----EKPFRADQVMKWIYHYCYDDFEQMTDINKILRAKLQ 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q   I  PE+ +E+ S DGT KW +           ++ETVYIPE  R TLCVSSQVGC+
Sbjct: 81  QVAEIRAPEVAEEQRSADGTIKWAITVGD------QQVETVYIPEDDRATLCVSSQVGCA 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  S  R I+N+VMM
Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSSGRRPITNVVMM 184

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 185 GMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 244

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++D+R+ +VPINRKY +E  +   R Y   SNA   R+T EYVML  INDS   A  L 
Sbjct: 245 PTDDVRDDIVPINRKYNIEQFLAGVRRYLTKSNANQGRVTVEYVMLDHINDSVEQAHQLA 304

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + LK  P+KINLIP+NP+PG  Y  S    I  F++ +   G+++ +R  RG DI AACG
Sbjct: 305 ECLKETPSKINLIPWNPFPGAPYGRSSNSRIDRFAKVLMEYGFTTIVRKTRGDDIDAACG 364

Query: 364 QLKSLS-KRIPKVPRQE 379
           QL      R  +  ++ 
Sbjct: 365 QLAGDVIDRTKRTLKKR 381


>gi|329123609|ref|ZP_08252169.1| cfr family radical SAM enzyme [Haemophilus aegyptius ATCC 11116]
 gi|327469808|gb|EGF15273.1| cfr family radical SAM enzyme [Haemophilus aegyptius ATCC 11116]
          Length = 390

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 159/379 (41%), Positives = 219/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 21  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 77  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 301 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 360

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 361 GQLAGDV--IDRTKRTAMK 377


>gi|114327110|ref|YP_744267.1| radical SAM protein [Granulibacter bethesdensis CGDNIH1]
 gi|122327908|sp|Q0BV08|RLMN_GRABC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|114315284|gb|ABI61344.1| radical SAM family enzyme [Granulibacter bethesdensis CGDNIH1]
          Length = 397

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 190/372 (51%), Positives = 252/372 (67%), Gaps = 18/372 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           ++ L+G+ RE+L EAL +IG P      R  Q+W WIY RG  DF+ MS I++  +  L 
Sbjct: 41  RKDLVGLSREQLTEALAEIGFPA----FRAKQLWHWIYHRGETDFRVMSSIAKPQQETLA 96

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123
           + F I  P + +   S D TRKWL RF         E ETVYIP+    RG +C+SSQVG
Sbjct: 97  ERFVISRPAVTECLTSVDETRKWLFRFRD-----GQEAETVYIPDPVEDRGAVCISSQVG 151

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C FC+TGTQ LVRNL   EI+ Q + AR   G++P  +           R +S IV
Sbjct: 152 CTLSCRFCHTGTQPLVRNLGPAEIVGQFMAARDAYGEWPSPKG-------ETPRLLSTIV 204

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++NVK+++ I  D  G++ S+RRITLSTSG VP + R G E+ V LAISL
Sbjct: 205 LMGMGEPLYNYENVKQAMRIVMDGDGIALSRRRITLSTSGVVPMMDRCGTELAVNLAISL 264

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV+++LR+ LVP+NRKYP+  LI ACR YP  SNARRITFEY+ML GINDS  +A  L+
Sbjct: 265 HAVTDELRDELVPLNRKYPIRELIAACRRYPAASNARRITFEYIMLDGINDSEAEARELV 324

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG +Y  S  K +  FS  +  +G++SPIRTPRG DILAACG
Sbjct: 325 RLIAGIPAKVNLIPFNPWPGSQYTPSRPKALERFSRIVMEAGFASPIRTPRGRDILAACG 384

Query: 364 QLKSLSKRIPKV 375
           QL++ S++  ++
Sbjct: 385 QLRTESRKERRI 396


>gi|256823058|ref|YP_003147021.1| radical SAM enzyme, Cfr family [Kangiella koreensis DSM 16069]
 gi|256796597|gb|ACV27253.1| radical SAM enzyme, Cfr family [Kangiella koreensis DSM 16069]
          Length = 374

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 166/377 (44%), Positives = 227/377 (60%), Gaps = 21/377 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E  +++G        R  Q+ KW++  G+ DF  M++IS+  R  L
Sbjct: 4   EKTNLLNLTRDEMVEFFVELG----EKPFRAQQVMKWVHQFGVEDFDEMTNISKVCRERL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE++  + S DGT KW L+ P     G   +E V+IPE+ RGTLCVSSQVGC
Sbjct: 60  KDVAEIKGPEVLSVQESKDGTVKWALKIP-----GGQAVEMVFIPERHRGTLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG Q   RNLT  EI+ QV LA   L               S  R ++N+VM
Sbjct: 115 ALECTFCSTGYQGFNRNLTTAEIIGQVWLAARYL----------HGKHKSDERVVTNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFD V KS+ +  D +    SKRR+TLSTSG VP + R+ +E+ V LAISLH
Sbjct: 165 MGMGEPLANFDPVVKSMQLMMDDLAYGLSKRRVTLSTSGMVPQLDRLIDEVDVALAISLH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLI 303
           A ++ LR++LVPIN+KYP++ L+ +   Y   SNA R  T EYVMLK +ND+ + A  L 
Sbjct: 225 APNDALRDVLVPINKKYPIKELMASVHRYLDRSNAARKATIEYVMLKDVNDTLQHAKELA 284

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  P KINLIPFNP+P   Y  S Q+ I  FS+ + + GY    R  RG DI AACG
Sbjct: 285 ELLKNTPCKINLIPFNPFPQANYQTSTQEAIDLFSDYLIKKGYVVVTRRTRGDDIDAACG 344

Query: 364 QLKSL-SKRIPKVPRQE 379
           QL    + +  +  R++
Sbjct: 345 QLAGKINDKTKRQERRQ 361


>gi|68248968|ref|YP_248080.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           influenzae 86-028NP]
 gi|81336620|sp|Q4QNH7|RLMN_HAEI8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|68057167|gb|AAX87420.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae
           86-028NP]
          Length = 390

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 159/379 (41%), Positives = 219/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 21  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 77  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 301 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 360

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 361 GQLAGDV--IDRTKRTAMK 377


>gi|319763716|ref|YP_004127653.1| radical sam enzyme, cfr family [Alicycliphilus denitrificans BC]
 gi|317118277|gb|ADV00766.1| radical SAM enzyme, Cfr family [Alicycliphilus denitrificans BC]
          Length = 374

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 151/382 (39%), Positives = 214/382 (56%), Gaps = 25/382 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +  + +     ++G      R R +Q+++WI+ RG  DF  MSD+++ +R  L  
Sbjct: 3   TNLLDLDLDAMAAFCERLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKG 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +   + + E  S DGT KWL       +GG   +ETV+IPE  RGTLC+SSQ GC++
Sbjct: 59  CAHVSGLQAISEHASADGTVKWLF-----DVGGGNAVETVFIPEDDRGTLCISSQAGCAV 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNLT  EI+ Q+  A  +L    G             R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLTTGEIVAQLWHAEHVLRQRRG----------DGERVISNVVMMG 163

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  +  +L I  D  G   S+RR+T+STSG VP + R+G +  V LA+SLHA 
Sbjct: 164 MGEPLQNYSALVPALRIMLDDHGYGLSRRRVTVSTSGVVPMMDRLGRDCPVALAVSLHAP 223

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +++LR+ LVP+NRKYPL+ L+ ACR Y   +    ITFEY ML G+ND P  A  LI ++
Sbjct: 224 NDELRDNLVPLNRKYPLQELLAACRRYLEHAPRDFITFEYCMLDGVNDQPEHARELIALV 283

Query: 307 K------GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
                  G+  K NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI A
Sbjct: 284 SRKAADGGVSCKFNLIPFNPFPASGLRRSPAAAVSAFAKLLSDAGIVTTVRKTRGDDIDA 343

Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382
           ACGQL    K   +V  +  ++
Sbjct: 344 ACGQLAGDVKDRTRVGERMARL 365


>gi|237807659|ref|YP_002892099.1| ribosomal RNA large subunit methyltransferase N [Tolumonas auensis
           DSM 9187]
 gi|259491997|sp|C4LC34|RLMN_TOLAT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|237499920|gb|ACQ92513.1| radical SAM enzyme, Cfr family [Tolumonas auensis DSM 9187]
          Length = 373

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 159/385 (41%), Positives = 213/385 (55%), Gaps = 25/385 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+   R  L                R  QI KWIY  G  DF  M+++++ +R  L
Sbjct: 4   NKVNLLDFDRNALRAFFAD---ELGEKAFRADQIMKWIYHFGCDDFSQMTNVNKALREKL 60

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PEI  E+ S DGT KW +R          E+ETVYIPE  R TLCVSSQVGC
Sbjct: 61  ARIAEIRAPEISTEQRSSDGTIKWAMRVGD------QEVETVYIPEADRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC TG Q   RNLT  EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 115 ALECKFCSTGQQGFNRNLTVSEIIGQVWRAAQVVG----------FPKDTGKRVITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  N+  +LS+  +  G   SKRR+T+STSG VP + ++G+ I V LAISLH
Sbjct: 165 MGMGEPLLNLSNLVPALSLMMEDFGFGLSKRRVTVSTSGVVPALDKLGDMIDVALAISLH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++ LR+ ++PIN KY ++  + + + Y   SNA   R+T EYV+L  +ND    A  L
Sbjct: 225 APNDKLRSEIMPINDKYNIQEFLGSVQRYLSKSNANHGRVTVEYVLLDHVNDDMEHAREL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P+KINLIPFNP+P   Y       +  FS+ +   GY+  +R  RG DI AAC
Sbjct: 285 AELLKDTPSKINLIPFNPFPSNPYGKPSNSRVDRFSKVLMEYGYTVIVRKTRGDDIDAAC 344

Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383
           GQL       +KR  K   QE +I+
Sbjct: 345 GQLVGDVIDRTKRTMKKRMQEQEIS 369


>gi|145628721|ref|ZP_01784521.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae
           22.1-21]
 gi|144979191|gb|EDJ88877.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae
           22.1-21]
          Length = 383

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 159/379 (41%), Positives = 219/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKQLG----EKPFRADQLVKWIYHFGEDNFDKMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 354 GQLAGDV--IDRTKRTAMK 370


>gi|293391771|ref|ZP_06636105.1| cfr family radical SAM enzyme [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952305|gb|EFE02424.1| cfr family radical SAM enzyme [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 379

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 154/378 (40%), Positives = 215/378 (56%), Gaps = 23/378 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R ++ E   ++G        R  Q+ KWIY  G  +F  M+++++ +R  L
Sbjct: 11  KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKL 66

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC
Sbjct: 67  KTMAEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQVGC 120

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 121 ALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 170

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 171 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 230

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VP+N+KY ++ LID+   Y  +SNA   ++T EYVML  IND    A  L
Sbjct: 231 APNDELRDEIVPLNKKYNIKNLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQL 290

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G +  +R  RG DI AAC
Sbjct: 291 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAAC 350

Query: 363 GQLKSLS-KRIPKVPRQE 379
           GQL      R  +  +++
Sbjct: 351 GQLAGDVIDRTKRTAQKK 368


>gi|326559876|gb|EGE10276.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169]
 gi|326569638|gb|EGE19690.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1]
          Length = 395

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/382 (41%), Positives = 226/382 (59%), Gaps = 29/382 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+GM ++EL    + +G        R +Q+ KWIY  G+ DF  M++IS+++++ L
Sbjct: 18  KKVNLLGMSKDELSAFFVSLG----EKSFRATQVMKWIYQFGVTDFFEMTNISKKLQYKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVS 119
           ++   ++ P +  ++ S DGTRKW+       + G   +ETV IP        R TLC+S
Sbjct: 74  HEVACVVPPTVKYKEFSQDGTRKWVFE-----VAGGSLVETVLIPADDGKQFGRKTLCIS 128

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC+L CSFC TG Q   R+LT  EI+ Q+ +A     +     + E         ++
Sbjct: 129 SQVGCALDCSFCSTGKQGFERDLTPSEIIGQLWVANQSYMENVPPTEREN--------RV 180

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+D V  S+S+  D      SKRR+TLSTSG VP +  + ++I V L
Sbjct: 181 TNVVMMGMGEPLLNYDPVVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDIDVAL 240

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP---GLSNARRITFEYVMLKGINDSP 296
           AISLHA +++LRN LVPIN+KYPL+ LI A + Y       + + IT EYVML G+NDS 
Sbjct: 241 AISLHAPNDELRNELVPINKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDSD 300

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L+ +LK +P+KINLIPFNP+P   Y  S    I  FS  + ++G+   IR  RG 
Sbjct: 301 EHAHQLVDLLKDLPSKINLIPFNPFPHAPYGRSSNNRIHAFSHILNQAGFVCTIRQTRGD 360

Query: 357 DILAACGQL----KSLSKRIPK 374
           DI AACGQL       ++R  K
Sbjct: 361 DIDAACGQLVGQVADRTRRAKK 382


>gi|297538107|ref|YP_003673876.1| radical SAM enzyme, Cfr family [Methylotenera sp. 301]
 gi|297257454|gb|ADI29299.1| radical SAM enzyme, Cfr family [Methylotenera sp. 301]
          Length = 374

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 156/384 (40%), Positives = 223/384 (58%), Gaps = 18/384 (4%)

Query: 1   MNFLKKE--SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
           M   KK   +L+   + +L +   + G        R  Q+ +W++  G+ DF+ M+DI++
Sbjct: 1   MIQGKKILVNLLNFNQPQLAKWFAEQG----EKPFRAKQLMRWMHHFGVYDFEQMTDIAK 56

Query: 59  EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
            +R  L     I  P +  E++S DGTRKWL+            IETV+IPE  RGTLC+
Sbjct: 57  VLREKLVVDAEITLPNVQLEQVSNDGTRKWLI-----GTDTANSIETVFIPEDDRGTLCI 111

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC+L C+FC TG Q   RNL+  EI+ Q+ +A   L    G +     ++ +  R 
Sbjct: 112 SSQVGCALECTFCSTGRQGFNRNLSVSEIIGQLAIANQSLRQESGYD-----LLSANDRI 166

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           ISN+VMMGMGEPL N+DNV  ++ I  D      S+RR+TLSTSG VP + R+ E+  V 
Sbjct: 167 ISNVVMMGMGEPLANYDNVVTAMQIMLDDNAYGLSRRRVTLSTSGMVPAMDRLKEDCPVA 226

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA ++ LR+++VPIN+KYPL+ L+ AC  Y   +    +TFEYVML G+ND+   
Sbjct: 227 LAVSLHAPNDALRDVIVPINKKYPLKELMAACNRYLEKAPRDFVTFEYVMLDGVNDTVEH 286

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L+ +++ +  K NLIPFNP+P   Y  S    I  F + + ++GY   +R  RG DI
Sbjct: 287 AHQLLDLVRNVSCKFNLIPFNPFPNSGYDTSKASHIRVFRDILMQAGYVVTVRKTRGEDI 346

Query: 359 LAACGQLKSLSKRIPKVPRQEMQI 382
            AACGQL      + K  R   +I
Sbjct: 347 DAACGQLAGKV--LDKTKRTANRI 368


>gi|240950291|ref|ZP_04754566.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305]
 gi|240295193|gb|EER46001.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305]
          Length = 386

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 163/378 (43%), Positives = 218/378 (57%), Gaps = 23/378 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ M R ++ E L  +G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 18  EKVNLMNMTRPQMREFLASLG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++       G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 74  KQVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQIETVYIPEADRATLCVSSQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL   EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 128 ALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 177

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLSTSG VP +  + E+I V LAISLH
Sbjct: 178 MGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKIDVALAISLH 237

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++++R+ +VPIN+KY ++MLID+   Y  +SNA   ++T EYVML  IND    A  L
Sbjct: 238 APNDEIRDEIVPINKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAHQL 297

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+LK  P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 298 AKVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKALMEYGFTVTIRKTRGDDIDAAC 357

Query: 363 GQLKSLS-KRIPKVPRQE 379
           GQL      R  +   + 
Sbjct: 358 GQLAGDVIDRTKRTLEKR 375


>gi|33602154|ref|NP_889714.1| hypothetical protein BB3178 [Bordetella bronchiseptica RB50]
 gi|81579923|sp|Q7WHM8|RLMN_BORBR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33576592|emb|CAE33670.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 382

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 149/383 (38%), Positives = 215/383 (56%), Gaps = 9/383 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  +++ +L+G+    L E + + G        R  Q+ +W++ RG   F  M+D++++ 
Sbjct: 1   MESVERVNLLGLDGAALSELVGQWG----GKPFRARQLQRWVHQRGADSFDAMTDLARDF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I    +  E+ S DGTRKWL       +G    IETV+IPE  RGTLC+SS
Sbjct: 57  RAQLARDCVIEALPVNTEQRSSDGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG Q   RNL A EI+ Q+  A+ +L        + G       R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVIS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  +L +  D      S+RR+T+STSG VP + R+ ++  V LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+NRKYPL  L+ AC  Y   +    ITFEY ML GIND+ + A 
Sbjct: 232 VSLHAPNDALRDELVPLNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHAR 291

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI++ + +  K+NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI A
Sbjct: 292 ELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDA 351

Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
           ACGQL    +   ++  +    T
Sbjct: 352 ACGQLAGEVRDRTRITERNATRT 374


>gi|304320170|ref|YP_003853813.1| hypothetical protein PB2503_02977 [Parvularcula bermudensis
           HTCC2503]
 gi|303299073|gb|ADM08672.1| hypothetical protein PB2503_02977 [Parvularcula bermudensis
           HTCC2503]
          Length = 382

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 189/379 (49%), Positives = 258/379 (68%), Gaps = 16/379 (4%)

Query: 5   KKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++  L G+ R  L+      +G+  +  +MR SQ+W+WIY  G+R+F  M++I + +R  
Sbjct: 15  QRRRLFGLSRAALQSLFAADLGLAPKAAKMRASQVWQWIYSHGVREFDQMTNIGKALRAQ 74

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQV 122
           ++  + +  PE+ + ++S DGTRK+L+RF        +E E V+IP   R G LCVSSQV
Sbjct: 75  MDALYDLSRPEVAERQVSQDGTRKYLIRFAP-----GIEAEAVFIPGVGRAGALCVSSQV 129

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C+FC+TGTQ LVRNLTAEEI+ Q+++ +  LG++P   D          R++SNI
Sbjct: 130 GCTLNCTFCHTGTQALVRNLTAEEIIAQIIVCKDDLGEWPSSRD---------DRQLSNI 180

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N D V +++ I +D  G+S S+RRIT+STSG V  +  +GE    MLAIS
Sbjct: 181 VFMGMGEPLYNLDAVAQAIDIIADGEGISISRRRITVSTSGVVSQMRALGERTEAMLAIS 240

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  + LRN LVPIN+K+PL+ L+ ACR YPG SNA+RITFEYVMLKGINDS  +A  L
Sbjct: 241 LHATHDALRNELVPINKKWPLDALLAACRDYPGTSNAKRITFEYVMLKGINDSDAEAREL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +++L+GIPAKINLIPFNPWP   Y CS    I  F++ + ++GY+SPIRTPRG DI AAC
Sbjct: 301 VRLLRGIPAKINLIPFNPWPDSPYECSSWDRIERFADIVNQAGYASPIRTPRGRDISAAC 360

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQLKS S +     R+  +
Sbjct: 361 GQLKSESVKERASARRRTE 379


>gi|332992286|gb|AEF02341.1| ribosomal RNA large subunit methyltransferase N [Alteromonas sp.
           SN2]
          Length = 372

 Score =  451 bits (1160), Expect = e-125,   Method: Composition-based stats.
 Identities = 163/384 (42%), Positives = 226/384 (58%), Gaps = 22/384 (5%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+ + RE L     + G        R  Q+ KWIY +G  DF+ MS++++ +R +
Sbjct: 1   MAKTNLLNLNREGLRNFFKEKG----EKPFRADQVMKWIYQQGESDFEKMSNLNKNLRAM 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +H  +  PEI   + + DGT K+ L        G  E+ETV+IPE  R TLCVSSQVG
Sbjct: 57  LIEHCEVKAPEIAYFQEASDGTIKFALALE-----GGQEVETVWIPEADRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C+FC T  Q   RNL+  EI+ QV    + LG          +   +  R I+N+V
Sbjct: 112 CALECTFCSTAQQGFNRNLSVSEIIGQVWRVATFLG----------LSKDTSKRPITNVV 161

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N  NV  +++I  D  G   SKRR+TLSTSG VP +  +G++I V LAISL
Sbjct: 162 MMGMGEPLLNLKNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALN 301
           HA +++LRN +VP+N+KY +E  +   R Y   S  N  R+T EYVML  INDS   A  
Sbjct: 222 HAPNDELRNEIVPVNKKYNIEAFLAGVRRYLEKSKANQGRVTVEYVMLSHINDSTDQAHE 281

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L K+LK  P KINLIPFNP+PG  YLCS    I  FS+ +   G+++ +R  RG DI AA
Sbjct: 282 LAKVLKDTPCKINLIPFNPYPGSPYLCSSNSRIDRFSKVLMDYGFTTVVRKTRGDDIDAA 341

Query: 362 CGQL-KSLSKRIPKVPRQEMQITG 384
           CGQL   +  R  ++ +++++   
Sbjct: 342 CGQLVGDVVDRTKRLLKKQVKGEA 365


>gi|33593205|ref|NP_880849.1| hypothetical protein BP2201 [Bordetella pertussis Tohama I]
 gi|81578506|sp|Q7VWK8|RLMN_BORPE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33563580|emb|CAE42479.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332382616|gb|AEE67463.1| hypothetical protein BPTD_2167 [Bordetella pertussis CS]
          Length = 382

 Score =  451 bits (1160), Expect = e-125,   Method: Composition-based stats.
 Identities = 148/383 (38%), Positives = 215/383 (56%), Gaps = 9/383 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  +++ +L+G+    L E + + G        R  Q+ +W++ RG   F  M+D++++ 
Sbjct: 1   MEAVERVNLLGLDGAALSELVGQWG----GKPFRARQLQRWVHQRGADSFDAMTDLARDF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I    +  E+ S DGTRKWL       +G    IETV+IPE  RGTLC+SS
Sbjct: 57  RAQLARDCVIEALPVNTEQRSSDGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG Q   RNL A EI+ Q+  A+ +L        + G       R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVIS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  +L +  D      S+RR+T+STSG VP + R+ ++  V LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL  L+ AC  Y   +    ITFEY ML GIND+ + A 
Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHAR 291

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI++ + +  K+NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI A
Sbjct: 292 ELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDA 351

Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
           ACGQL    +   ++  +    T
Sbjct: 352 ACGQLAGEVRDRTRITERNATRT 374


>gi|257465082|ref|ZP_05629453.1| hypothetical protein AM202_01135 [Actinobacillus minor 202]
 gi|257450742|gb|EEV24785.1| hypothetical protein AM202_01135 [Actinobacillus minor 202]
          Length = 386

 Score =  451 bits (1160), Expect = e-125,   Method: Composition-based stats.
 Identities = 163/378 (43%), Positives = 218/378 (57%), Gaps = 23/378 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ M R ++ E L  +G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 18  EKVNLMNMTRPQMREFLASLG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++       G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 74  KQVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQIETVYIPEADRATLCVSSQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL   EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 128 ALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 177

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLSTSG VP +  + E+I V LAISLH
Sbjct: 178 MGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKIDVALAISLH 237

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++++R+ +VPIN+KY +EMLI++   Y  +SNA   ++T EYVML  IND    A  L
Sbjct: 238 APNDEIRDEIVPINKKYNIEMLINSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAHQL 297

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+LK  P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 298 AKVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKALMEYGFTVTIRKTRGDDIDAAC 357

Query: 363 GQLKSLS-KRIPKVPRQE 379
           GQL      R  +   + 
Sbjct: 358 GQLAGDVIDRTKRTLEKR 375


>gi|103486196|ref|YP_615757.1| hypothetical protein Sala_0703 [Sphingopyxis alaskensis RB2256]
 gi|122985201|sp|Q1GV98|RLMN_SPHAL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|98976273|gb|ABF52424.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
          Length = 420

 Score =  451 bits (1160), Expect = e-125,   Method: Composition-based stats.
 Identities = 199/399 (49%), Positives = 257/399 (64%), Gaps = 25/399 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            +  L+G+ R+ +   L++ G+  +  ++R  QIW WIY RG+ DF GM+DI++ +R  L
Sbjct: 21  NRIDLVGLSRDAIGGVLVEAGLDAKAAKLRAKQIWHWIYHRGVTDFMGMTDIAKAMRPWL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              F I  P + + ++S DGTRKWLL           E E V+IP+  RGTLCVSSQVGC
Sbjct: 81  TDRFIIGRPTVREAQVSSDGTRKWLL-----AAADGQEYEMVFIPDADRGTLCVSSQVGC 135

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV------------- 171
           +L C FC+TGT +LVRNL A EI+ QVLLAR  LG++P                      
Sbjct: 136 TLNCRFCHTGTMRLVRNLGAGEIVGQVLLARDALGEWPKGNMAGFGAGSDADPEDDDADD 195

Query: 172 -----IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
                  + GR ++NIVMMGMGEPL NFD VK +L I  D  GL+ SKRRITLSTSG VP
Sbjct: 196 DAVGHYTADGRMLTNIVMMGMGEPLYNFDEVKAALKIVMDGDGLALSKRRITLSTSGVVP 255

Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
            +AR GEEIGV LA+SLHAVS ++R+ +VP+NRKY +E L+ AC  YPG +NARRITFEY
Sbjct: 256 MMARAGEEIGVNLAVSLHAVSKEIRDEIVPLNRKYGIEELLQACADYPGANNARRITFEY 315

Query: 287 VMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344
           VMLK  ND   DA  L++++K   +PAK+NLIPFNPWPG  Y CS  + +  FS  I ++
Sbjct: 316 VMLKDKNDRDEDARELVRLIKQYKLPAKVNLIPFNPWPGAPYECSTPERVRAFSNLIFKA 375

Query: 345 GYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
           G S+PIRTPRG DI+AACGQLKS + R  +     +   
Sbjct: 376 GISAPIRTPRGRDIMAACGQLKSAATRPTRAELDRIAEE 414


>gi|291613878|ref|YP_003524035.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1]
 gi|291583990|gb|ADE11648.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1]
          Length = 359

 Score =  451 bits (1160), Expect = e-125,   Method: Composition-based stats.
 Identities = 154/377 (40%), Positives = 219/377 (58%), Gaps = 20/377 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+      +     + G        R  Q+ +WIY  G  DF  MSD++  +R  L  
Sbjct: 2   QNLLDFEPAAMTAWFAEHG----EKPFRARQVLRWIYKGGESDFDAMSDLAISLREKLKL 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P+++ E+ + DGTRKWLL      +G    +ETV+IPE+ RGTLCVS+Q GC+L
Sbjct: 58  IACIQSPKVMREETASDGTRKWLL-----DVGTGNAVETVFIPEEGRGTLCVSTQAGCAL 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG Q   RNL+  EI+ QV  A   LG                   ++N+V+MG
Sbjct: 113 DCAFCSTGKQGFNRNLSTAEIIGQVWWANRELGKD-----------ADGNWPVTNVVLMG 161

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NFDN   +L +  D      S+RR+T+STSG VP + R+ +E  V LAISLHA 
Sbjct: 162 MGEPLLNFDNTVNALRLMLDDNAYGLSRRRVTVSTSGVVPAMDRLRDECPVALAISLHAP 221

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LRN+LVPIN+KYPL+ L+ AC+ Y   +    +TFEYVML G+NDS + A  LI+++
Sbjct: 222 NDALRNVLVPINQKYPLQELMAACQRYLEKAPRDFVTFEYVMLAGVNDSVQHARELIELV 281

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+P   Y  SD   ++ F + + ++G  + IR  RG DI AACGQL 
Sbjct: 282 RDVPCKFNLIPFNPFPQAPYQRSDMPTVLRFRDVLMQAGIVTTIRKVRGDDIAAACGQLA 341

Query: 367 SLSKRIPKVPRQEMQIT 383
              +   K   + M+++
Sbjct: 342 GQVQDKTKRTHRLMEVS 358


>gi|219872161|ref|YP_002476536.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           parasuis SH0165]
 gi|219692365|gb|ACL33588.1| predicted Fe-S-cluster redox enzyme [Haemophilus parasuis SH0165]
          Length = 386

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 156/383 (40%), Positives = 220/383 (57%), Gaps = 23/383 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++ +R  L
Sbjct: 18  EKINLLNLNRQQMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMTNINKVLREKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+  E+ S DGT KW +           +IETVYIP+  R TLCVSSQVGC
Sbjct: 74  KRIAEIKAPEVAVEQRSADGTIKWAMWVGD------QQIETVYIPKDDRATLCVSSQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL+  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 128 ALACTFCSTAQQGFNRNLSVSEIIGQVWRASKIIGNFGV----------TGIRPITNVVM 177

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLSTSG VP + ++ E+I V LAISLH
Sbjct: 178 MGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLH 237

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LRN L+P+N+KY ++MLID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 238 APNDELRNELIPLNKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLSHVNDDVEHAHQL 297

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P+KINLIP+NP+P   Y  S    I  F + +   G++  +R  RG DI AAC
Sbjct: 298 ADVLKNTPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVTVRKTRGDDIDAAC 357

Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384
           GQL      R  +   +     G
Sbjct: 358 GQLAGDVIDRTKRTLEKRKFGEG 380


>gi|296158994|ref|ZP_06841822.1| radical SAM enzyme, Cfr family [Burkholderia sp. Ch1-1]
 gi|295890869|gb|EFG70659.1| radical SAM enzyme, Cfr family [Burkholderia sp. Ch1-1]
          Length = 383

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 152/384 (39%), Positives = 220/384 (57%), Gaps = 10/384 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+ +  + L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSSPTVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    +I  P IV + IS DGTRKWL+      +G    +ETVYIPE++RGTLCVSS
Sbjct: 57  REKLKGRATISMPGIVSDHISTDGTRKWLI-----DVGNSNAVETVYIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
           Q GC++ C FC TG Q   RNLT  EI+ Q+ +A   L    G +          G ++ 
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASRGVDGGRATGGDGKGERVV 171

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S+ LR++LVP+N+KYPL  L+ AC+ Y  ++    ITFEY ML G+NDS   A
Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI 
Sbjct: 292 RELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLMDAGVVTTVRKTRGDDID 351

Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
           AACGQL    K   ++  +  +  
Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375


>gi|332970237|gb|EGK09230.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)]
          Length = 403

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/386 (40%), Positives = 227/386 (58%), Gaps = 27/386 (6%)

Query: 2   NFLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           + +  K +++GM +E+L +   +IG        R +Q+ KWIY  G+ DF  M+++S+ +
Sbjct: 20  DTMPAKTNILGMSQEQLGDYFKQIG----EKPFRATQVMKWIYQHGVTDFAQMTNLSKGL 75

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGT 115
           R  L++   +  PE+V ++ S DGTRKW+ +     + G   +ETV IP        R T
Sbjct: 76  REKLSEKACVETPEVVHKEFSEDGTRKWVFK-----VAGGSLVETVLIPADDSKVNGRKT 130

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           LC+SSQVGC+L CSFC TG Q   R+LTA EI+ Q+ +A +   +        G+     
Sbjct: 131 LCISSQVGCALDCSFCSTGKQGFERDLTAAEIIGQLWVANASYME--------GVDSSEW 182

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
              ++N+VMMGMGEPL N+  V  S+S+         SKRR+TLSTSG VP +  + ++I
Sbjct: 183 QNNVTNVVMMGMGEPLLNYKPVVSSMSLMLSDHAYGLSKRRVTLSTSGVVPKMYDLYKDI 242

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP---GLSNARRITFEYVMLKGI 292
            V LAISLHA +++LRN LVPIN+KYPL  LI A + Y       + + +T EYVML G+
Sbjct: 243 DVALAISLHAPNDELRNELVPINKKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGV 302

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           NDS   A  L+ +L+G+P+KINLIPFNP+P   Y  S    I  FS  +  +G+   IR 
Sbjct: 303 NDSDEHAHQLVALLEGLPSKINLIPFNPFPHAPYDRSSNNRIHAFSNILNNAGFVCTIRQ 362

Query: 353 PRGLDILAACGQL-KSLSKRIPKVPR 377
            RG DI AACGQL   ++ R  +  +
Sbjct: 363 TRGDDIDAACGQLVGQVADRTRRSAK 388


>gi|238027069|ref|YP_002911300.1| hypothetical protein bglu_1g14480 [Burkholderia glumae BGR1]
 gi|237876263|gb|ACR28596.1| Hypothetical protein bglu_1g14480 [Burkholderia glumae BGR1]
          Length = 378

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 151/378 (39%), Positives = 216/378 (57%), Gaps = 12/378 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+    E L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSDTPVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L     I  PEI  + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRAVIGMPEIASDHVSSDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   L +  G             R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIVGQLRMAEFALRESLGRAPGPNG---KAERVVT 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR++LVP+N+KYPL  L+ AC+ Y  ++    ITFEY ML GIND+   A 
Sbjct: 229 VSLHAPNDALRDMLVPLNKKYPLRELMAACQRYLAVAPRDFITFEYCMLDGINDTDAHAR 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    L S  + I  FS+ +  +G  + +R  RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLLRSKNERIKQFSQILIEAGVVTTVRKTRGDDIDA 348

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++ ++
Sbjct: 349 ACGQLAGAVKDRTRLQQR 366


>gi|301169067|emb|CBW28664.1| predicted enzyme [Haemophilus influenzae 10810]
          Length = 383

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 218/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGI----------TGVRPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++L   P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 294 AEVLNNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 354 GQLAGDV--IDRTKRTAMK 370


>gi|293604539|ref|ZP_06686944.1| cfr family radical SAM enzyme [Achromobacter piechaudii ATCC 43553]
 gi|292817120|gb|EFF76196.1| cfr family radical SAM enzyme [Achromobacter piechaudii ATCC 43553]
          Length = 384

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 149/380 (39%), Positives = 216/380 (56%), Gaps = 9/380 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  +++ +L+G+    L E + + G        R  Q+ +W++ RG   F  M+D+++E 
Sbjct: 1   MESVERINLLGLDGSALSELVGQWG----GKPFRARQLQRWMHQRGADSFDAMTDLAREF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L  +  I    +  E+ S DGTRKWL       +G    IETV+IPE  RGTLC+SS
Sbjct: 57  RSQLASNCRIEALPVNIEQRSADGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG Q   RNL   EI+ Q+  A+ +L    G   +E        R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESAKATEDTRVIS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  +L +  D      S+RR+T+STSG VP + R+ ++  V LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL+ L+ AC  Y   +    ITFEY ML GIND+ + A 
Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAK 291

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI+I + +  K+NLIPFNP+P      S+   +  F++ +  +G  + +R  RG DI A
Sbjct: 292 ELIQIARQLRCKLNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDA 351

Query: 361 ACGQLKSLSKRIPKVPRQEM 380
           ACGQL    +   ++  +  
Sbjct: 352 ACGQLAGEVRDRTRITERNA 371


>gi|221066031|ref|ZP_03542136.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
 gi|220711054|gb|EED66422.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
          Length = 373

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 155/383 (40%), Positives = 210/383 (54%), Gaps = 25/383 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+    E L     ++G      R R +Q+++WI+ RG  DF  M+D+++ +R  L  
Sbjct: 3   TNLLDFDLEGLTAYCEQLG----EKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKS 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I    +V E +S DGT KWL       +G    +E+V+IPE  RGTLCVSSQ GC++
Sbjct: 59  RAHITALPVVTEHVSADGTVKWLF-----DVGDGNAVESVFIPEDDRGTLCVSSQAGCAV 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL   EIL Q+  A   L    G ED          R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLDTGEILAQLWYAEHSLRKRFGTED----------RIISNVVMMG 163

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  +  +L +  D  G   S+RR+T+STSG VP + R+ ++  V LA+SLHA 
Sbjct: 164 MGEPLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAP 223

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+NRKYP+  L+DAC  Y   +    ITFEY ML G+ND P  A  LI+++
Sbjct: 224 NDPLRDNLVPLNRKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELV 283

Query: 307 KGIP-----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +         K NLIPFNP+P    L S    +  F+  +  +G  + +R  RG DI AA
Sbjct: 284 RARGDGKSWCKFNLIPFNPFPASGLLRSSAARVTEFATMLSNAGIVTTVRKTRGDDIDAA 343

Query: 362 CGQLKSLSK-RIPKVPRQEMQIT 383
           CGQL    K R     R   Q T
Sbjct: 344 CGQLAGDVKDRTRAAERMAKQRT 366


>gi|330824021|ref|YP_004387324.1| ribosomal RNA large subunit methyltransferase N [Alicycliphilus
           denitrificans K601]
 gi|329309393|gb|AEB83808.1| Ribosomal RNA large subunit methyltransferase N [Alicycliphilus
           denitrificans K601]
          Length = 374

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 151/382 (39%), Positives = 214/382 (56%), Gaps = 25/382 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +  + +     ++G      R R +Q+++WI+ RG  DF  MSD+++ +R  L  
Sbjct: 3   TNLLDLDLDAMAAFCERLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKG 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +   + + E  S DGT KWL       +GG   +ETV+IPE  RGTLC+SSQ GC++
Sbjct: 59  CAHVSGLQAISEHASADGTVKWLF-----DVGGGNAVETVFIPEDDRGTLCISSQAGCAV 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNLT  EI+ Q+  A  +L    G             R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLTTGEIVAQLWHAEHVLRQRRG----------DGERVISNVVMMG 163

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  +  +L I  D  G   S+RR+T+STSG VP + R+G +  V LA+SLHA 
Sbjct: 164 MGEPLQNYSALVPALRIMLDDHGYGLSRRRVTVSTSGVVPMMDRLGRDCPVALAVSLHAP 223

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +++LR+ LVP+NRKYPL+ L+ ACR Y   +    ITFEY ML G+ND P  A  LI ++
Sbjct: 224 NDELRDNLVPLNRKYPLQELLAACRRYLEHAPRDFITFEYCMLDGVNDQPEHARELIALV 283

Query: 307 K------GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
                  G+  K NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI A
Sbjct: 284 SRKAADGGVSCKFNLIPFNPFPASGLRRSPAVAVSAFAKLLSDAGIVTTVRKTRGDDIDA 343

Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382
           ACGQL    K   +V  +  ++
Sbjct: 344 ACGQLAGDVKDRTRVGERMARL 365


>gi|317403336|gb|EFV83849.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
           xylosoxidans C54]
          Length = 384

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 149/380 (39%), Positives = 213/380 (56%), Gaps = 9/380 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  +++ +L+G+    L E + + G        R  Q+ +W++ RG   F  M+D++++ 
Sbjct: 1   MESVERINLLGLDGSALSELVGQWG----GKPFRARQLQRWMHQRGADSFDAMTDLARDF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L     I    +  E+ S DGTRKWL       +G    IETV+IPE  RGTLC+SS
Sbjct: 57  RGQLASRCVIEALAVNTEQRSSDGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG Q   RNL   EI+ Q+  A+ +L    G   +E        R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATDDTRVIS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  +L +  D      S+RR+T+STSG VP + R+ ++  V LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL+ L+ AC  Y   +    ITFEY ML GIND+ + A 
Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAR 291

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI I + I  K+NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI A
Sbjct: 292 ELIHIARQIRCKLNLIPFNPFPASGLKRSPSARVKVFAQRLMDAGIITTVRKTRGDDIDA 351

Query: 361 ACGQLKSLSKRIPKVPRQEM 380
           ACGQL    +   ++  +  
Sbjct: 352 ACGQLAGEVRDRTRITERNA 371


>gi|187924520|ref|YP_001896162.1| radical SAM enzyme, Cfr family [Burkholderia phytofirmans PsJN]
 gi|205829686|sp|B2SXT2|RLMN_BURPP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|187715714|gb|ACD16938.1| radical SAM enzyme, Cfr family [Burkholderia phytofirmans PsJN]
          Length = 383

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 152/384 (39%), Positives = 220/384 (57%), Gaps = 10/384 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+ +  + L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSSPTVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    +I  P IV + IS DGTRKWL+      +G    +ETVYIPE++RGTLCVSS
Sbjct: 57  REKLKGRATISMPGIVSDNISTDGTRKWLI-----DVGNSNAVETVYIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
           Q GC++ C FC TG Q   RNLT  EI+ Q+ +A   L    G +          G ++ 
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTAEIIGQLRMAEFALRASRGIDGGRATGGDGKGERVV 171

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S+ LR++LVP+N+KYPL  L+ AC+ Y  ++    ITFEY ML G+NDS   A
Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI 
Sbjct: 292 RELLALTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLMDAGVVTTVRKTRGDDID 351

Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
           AACGQL    K   ++  +  +  
Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375


>gi|295399765|ref|ZP_06809746.1| radical SAM enzyme, Cfr family [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978168|gb|EFG53765.1| radical SAM enzyme, Cfr family [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 364

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 203/366 (55%), Gaps = 25/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+  +  E+L+  +++ G        R +QI++W+Y + +  F  M+++ + +R  L+ 
Sbjct: 19  PSIYSLTFEQLKNWIIEQG----EKPFRATQIYEWLYQKRVTHFSEMTNLPKALREKLSG 74

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           HF I   + + ++ S DGT K+L             IETV +      ++CV++QVGC +
Sbjct: 75  HFDITTLKTLVKQTSKDGTMKFLFELHD-----GYSIETVLMRHNYGNSICVTTQVGCRI 129

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L R+L A EI+ QV+  +  L +                 +IS+IV+MG
Sbjct: 130 GCTFCASTLGGLKRHLEAGEIVAQVVKVQKELDE--------------QNERISSIVVMG 175

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEP  N+D + K L I + + GL+   R IT+STSG +P I +  +E + V  AISLHA
Sbjct: 176 IGEPFDNYDELIKFLKIVNHAKGLNIGARHITVSTSGIIPKIYQFADEGMQVNFAISLHA 235

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + +LR  L+PIN+ YPL  L+DA R+Y   +   R+TFEY +  G+ND    A  L ++
Sbjct: 236 PTTELRTKLMPINKAYPLPKLMDAVRYYIEKTGR-RVTFEYGLFGGVNDQLEHAEQLAEL 294

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KG+   +NLIP N  P   Y+ + ++ I  F   +K+ G +  IR  +G DI AACGQL
Sbjct: 295 IKGLKCHVNLIPVNYVPERNYVRTPREQIFAFERALKKHGINVTIRREQGHDIDAACGQL 354

Query: 366 KSLSKR 371
           ++  ++
Sbjct: 355 RAKERK 360


>gi|319779677|ref|YP_004130590.1| Ribosomal RNA large subunit methyltransferase N [Taylorella
           equigenitalis MCE9]
 gi|317109701|gb|ADU92447.1| Ribosomal RNA large subunit methyltransferase N [Taylorella
           equigenitalis MCE9]
          Length = 378

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 151/381 (39%), Positives = 217/381 (56%), Gaps = 14/381 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  L+K++LIG+    L E + K G    H   R  Q+  WI+ +G  +F  M++++ + 
Sbjct: 1   MTILEKQNLIGLDYTVLTELVAKWG----HKPFRAKQLMNWIHQKGESNFSNMTNLANDF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  P+ + +++S DGT KWL       +     IETV+IPE  RGTLC+SS
Sbjct: 57  RKNLAEFAEISVPKELTKQVSTDGTTKWLF-----DVQNNNAIETVFIPEDDRGTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNLT  EI+ QV LAR  +           +      R IS
Sbjct: 112 QAGCTVACRFCSTGHQGFNRNLTTSEIIGQVWLARKEI-----LNSSTDIQKLPGDRVIS 166

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V MGMGEPL N+D V  ++ +  D      S+RR+T+STSG +P + ++ ++  V LA
Sbjct: 167 NVVFMGMGEPLLNYDQVLPAVKMLVDQNAYGLSRRRVTVSTSGVIPFMDKLSQDCPVALA 226

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LRN L+P+N+KYPL+ LIDAC  Y   +    ITFEY+ML+ +ND+   A 
Sbjct: 227 VSLHAPNDALRNQLIPLNKKYPLKELIDACNRYIEFAPRDFITFEYIMLEDVNDTDIHAN 286

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI+I + + +K+NLIPFNP+P      S  + +  FS  +  +G  +  R  RG DI A
Sbjct: 287 QLIEICREVKSKVNLIPFNPFPESGLKRSSSQRVKAFSAILNDAGIVATTRKTRGDDIDA 346

Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381
           ACGQL    K   K+     Q
Sbjct: 347 ACGQLAGDIKDKSKISELMKQ 367


>gi|322515331|ref|ZP_08068328.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976]
 gi|322118707|gb|EFX90919.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976]
          Length = 393

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 154/377 (40%), Positives = 216/377 (57%), Gaps = 22/377 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++         R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKINLMNLTRQEMRELFAEM----DEKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++          +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEADRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP    + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPAFDIMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ ++PIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364

Query: 363 GQLKSLSKRIPKVPRQE 379
           GQL        K   ++
Sbjct: 365 GQLAGDVIDRTKRTMEK 381


>gi|145638726|ref|ZP_01794335.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae PittII]
 gi|145272321|gb|EDK12229.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae PittII]
          Length = 383

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 218/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKQLG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++L   P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 294 AEVLNNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 354 GQLAGDV--IDRTKRTAMK 370


>gi|90021078|ref|YP_526905.1| Crp/FNR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|123090598|sp|Q21KT6|RLMN_SACD2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|89950678|gb|ABD80693.1| transcriptional regulator, Crp/Fnr family [Saccharophagus degradans
           2-40]
          Length = 398

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 167/375 (44%), Positives = 226/375 (60%), Gaps = 22/375 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + +LE     +G      R R +Q+ KWI+  G+ DF+ M++IS+ +R  L+
Sbjct: 11  KVNLMGLSQAKLEAFFDSLG----EKRFRATQVLKWIHQMGVTDFEQMTNISKPLRDKLS 66

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q    + PE+V++  S DGTRK+L+R     +GG   +ETVYIP+  RGTLCVSSQVGCS
Sbjct: 67  QVAEAVAPEVVNQWDSSDGTRKFLIR-----VGGGNAVETVYIPDGDRGTLCVSSQVGCS 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   R+LTA EI+ QV  A      F               RKI+N+VMM
Sbjct: 122 LDCSFCATGKQGFNRDLTAAEIIGQVWQAAKSFNQFGV----------GAQRKITNVVMM 171

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  S+++         SKRR+TLSTSG VP + ++GE     LAISLHA
Sbjct: 172 GMGEPLLNFDNVVDSMNLMMHDNCYGLSKRRVTLSTSGVVPALDKLGEYTDACLAISLHA 231

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303
            +N LRN LVPIN+KYP+EML+ + + Y       R  +T EY ++  +ND P  A  L 
Sbjct: 232 PNNALRNELVPINKKYPIEMLLASAKRYIDGLPDVRRKMTIEYTLIDQVNDRPEHAHELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK IP KINLIPFNP+    Y       +  F + +  +GY++ +RT RG DI AACG
Sbjct: 292 ELLKDIPVKINLIPFNPFNLSNYKRVSNNALRRFQQILIDAGYTTTVRTTRGDDIDAACG 351

Query: 364 QLKS-LSKRIPKVPR 377
           QL   ++ R  +  R
Sbjct: 352 QLAGQVNDRTKRSQR 366


>gi|163856328|ref|YP_001630626.1| hypothetical protein Bpet2017 [Bordetella petrii DSM 12804]
 gi|205829671|sp|A9IK57|RLMN_BORPD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|163260056|emb|CAP42357.1| conserved hypothetical protein [Bordetella petrii]
          Length = 381

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 149/383 (38%), Positives = 216/383 (56%), Gaps = 10/383 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   ++ +L+G+    L + + + G        R  Q+ +WI+ RG   F  M+D++++ 
Sbjct: 1   METAERVNLLGLDGAALSDLVGQWG----GKPFRARQLQRWIHQRGADSFDAMTDLARDF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L Q   I    +  E+ S DGTRKWL       +G    IETV+IPE  RGTLCVSS
Sbjct: 57  RGQLAQQCRIQALPVNTEQRSSDGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNLT+ EI+ Q+  A+ +L +        G       R +S
Sbjct: 112 QAGCAVNCRFCSTGHQGFNRNLTSSEIIGQLWWAKRVL-EADAGTARLGGAGNDDTRVVS 170

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D +  +L +  D      S+RR+T+STSG VP + R+  +  V LA
Sbjct: 171 NVVMMGMGEPLLNYDQLLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSRDCPVALA 230

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL  L+ AC  Y   +    ITFEY ML GIND+ + A 
Sbjct: 231 VSLHAPTDALRDELVPLNKKYPLAELLAACERYLASAPRDFITFEYCMLDGINDTDQHAR 290

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI++ + +  K+NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI A
Sbjct: 291 ALIQVARQVRCKLNLIPFNPFPASGLKRSPSARVKVFAQRLMDAGIVTTVRKTRGDDIDA 350

Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
           ACGQL    +   +V ++    T
Sbjct: 351 ACGQLAGEVRDRTRVAQRNAGRT 373


>gi|307729247|ref|YP_003906471.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1003]
 gi|307583782|gb|ADN57180.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1003]
          Length = 383

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 151/384 (39%), Positives = 219/384 (57%), Gaps = 10/384 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+ +  + L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSSSTVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    +I  P IV + IS DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRATISMPGIVSDHISADGTRKWLI-----DVGNSNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
           Q GC++ C FC TG Q   RNLT  EI+ Q+ +A   L    G            G ++ 
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASLGAAGGRATGGEGKGERVV 171

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S+ LR++LVP+N+KYPL  L+ AC+ Y  ++    ITFEY ML G+NDS   A
Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI 
Sbjct: 292 RELLALTRDVPCKFNLIPFNPFPESGLVRSRPEQIKRFAQVLVDAGVVTTVRKTRGDDID 351

Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
           AACGQL    K   ++  +  +  
Sbjct: 352 AACGQLAGAVKDRTRLAERSGKAA 375


>gi|145636367|ref|ZP_01792036.1| hypothetical protein CGSHiHH_07816 [Haemophilus influenzae PittHH]
 gi|148825353|ref|YP_001290106.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           influenzae PittEE]
 gi|145270532|gb|EDK10466.1| hypothetical protein CGSHiHH_07816 [Haemophilus influenzae PittHH]
 gi|148715513|gb|ABQ97723.1| hypothetical protein CGSHiEE_01185 [Haemophilus influenzae PittEE]
          Length = 383

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 217/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 294 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 354 GQLAGDV--IDRTKRTAMK 370


>gi|330817169|ref|YP_004360874.1| hypothetical protein bgla_1g22910 [Burkholderia gladioli BSR3]
 gi|327369562|gb|AEA60918.1| hypothetical protein bgla_1g22910 [Burkholderia gladioli BSR3]
          Length = 378

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 150/378 (39%), Positives = 214/378 (56%), Gaps = 12/378 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+    E L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L     I  PEI  + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRAMIGMPEIASDHVSSDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   L +  G             R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIVGQLRMAEFALRESLGRAPGPNG---KADRVVT 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL  L+ AC+ Y  ++    ITFEY ML G+ND+   A 
Sbjct: 229 VSLHAPNDALRDELVPLNKKYPLRELMAACQRYLTVAPRDFITFEYCMLDGVNDTDAHAR 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    L S  + I  FS+ +  +G  + +R  RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLLRSKNERIKQFSQILIDAGVVTTVRKTRGDDIDA 348

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366


>gi|145640315|ref|ZP_01795899.1| hypothetical protein CGSHiR3021_09660 [Haemophilus influenzae
           R3021]
 gi|145274901|gb|EDK14763.1| hypothetical protein CGSHiR3021_09660 [Haemophilus influenzae
           22.4-21]
          Length = 383

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 159/379 (41%), Positives = 219/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++MLID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIQMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 354 GQLAGDV--IDRTKRTAMK 370


>gi|323526580|ref|YP_004228733.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1001]
 gi|323383582|gb|ADX55673.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1001]
          Length = 383

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 150/384 (39%), Positives = 220/384 (57%), Gaps = 10/384 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+ +  + L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSSSTVNLLDLDAQGLVAYCESLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    ++  P IV + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRATLTMPGIVSDHVSADGTRKWLI-----DVGNSNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
           Q GC++ C FC TG Q   RNLT  EI+ Q+ +A   L    G            G ++ 
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASLGAAGGRATGGEGKGERVV 171

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S+ LR++LVP+N+KYPL  L+ AC+ Y  ++    ITFEY ML G+NDS   A
Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+ + + +P K NLIPFNP+P    + S Q+ I  F++ +  +G  + +R  RG DI 
Sbjct: 292 RELLALTRDVPCKFNLIPFNPFPESGLVRSKQEQIKRFAQVLMDAGVVTTVRKTRGDDID 351

Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
           AACGQL    K   ++  +  +  
Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375


>gi|254252255|ref|ZP_04945573.1| hypothetical protein BDAG_01475 [Burkholderia dolosa AUO158]
 gi|124894864|gb|EAY68744.1| hypothetical protein BDAG_01475 [Burkholderia dolosa AUO158]
          Length = 379

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 148/378 (39%), Positives = 215/378 (56%), Gaps = 12/378 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+    E L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNASDFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    SI  P+IV + +S DGTRKWL+      +G    +ETV+IPE +RGTLCVSS
Sbjct: 57  REKLKGRASIAMPDIVSDHVSADGTRKWLI-----DVGNGNAVETVFIPEGTRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   L    G             R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N++ V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A 
Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQILIDAGIVTTVRKTRGDDIDA 348

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366


>gi|261868678|ref|YP_003256600.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414010|gb|ACX83381.1| hypothetical protein D11S_2027 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 379

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 154/378 (40%), Positives = 214/378 (56%), Gaps = 23/378 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R ++ E   ++G        R  Q+ KWIY  G  +F  M+++++ +R  L
Sbjct: 11  KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKL 66

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC
Sbjct: 67  KTMAEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRTTLCVSSQVGC 120

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 121 ALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 170

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 171 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 230

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VP+N+KY ++ LID+   Y  +SNA   ++T EYVML  IND    A  L
Sbjct: 231 APNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQL 290

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+P   Y  S    I  F + +   G +  +R  RG DI AAC
Sbjct: 291 AAVLKNTPCKINLIPWNPFPQAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAAC 350

Query: 363 GQLKSLS-KRIPKVPRQE 379
           GQL      R  +  +++
Sbjct: 351 GQLAGDVIDRTKRTAQKK 368


>gi|170718501|ref|YP_001783713.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus
           2336]
 gi|205829771|sp|B0UWR0|RLMN_HAES2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829859|sp|Q0I3U8|RLMN_HAES1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|168826630|gb|ACA32001.1| radical SAM enzyme, Cfr family [Haemophilus somnus 2336]
          Length = 372

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 156/378 (41%), Positives = 218/378 (57%), Gaps = 23/378 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+ + R+++     ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 3   DKINLMNLTRQQMRAFFQELG----EKPFRADQLVKWIYHFGEDNFDHMTNINKKLREKL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PEI  E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC
Sbjct: 59  KTVAEIKAPEIAVEQRSADGTIKWAMQVGD------QQVETVYIPETDRATLCVSSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 113 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 162

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP + ++ E I V LAISLH
Sbjct: 163 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLH 222

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LRN +VPIN+KY ++ML+++   Y  +SNA   ++T EYVML  IND    A  L
Sbjct: 223 APNDELRNEIVPINKKYNIKMLMESVNRYLNVSNANHGKVTIEYVMLDHINDGTEHAHQL 282

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +   G++  +R  RG DI AAC
Sbjct: 283 AEVLKNTPCKINLIPWNPFPDAPYAKSSNTRIDRFQKTLMEYGFTVILRKTRGDDIDAAC 342

Query: 363 GQLKSLS-KRIPKVPRQE 379
           GQL      R  +  +++
Sbjct: 343 GQLAGDVIDRTKRTAQKK 360


>gi|82703494|ref|YP_413060.1| hypothetical protein Nmul_A2379 [Nitrosospira multiformis ATCC
           25196]
 gi|123768149|sp|Q2Y6F3|RLMN_NITMU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|82411559|gb|ABB75668.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosospira multiformis
           ATCC 25196]
          Length = 365

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 160/379 (42%), Positives = 217/379 (57%), Gaps = 17/379 (4%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+    + L     +IG        R  Q+ +WI+  G  DF  MSD+++ +R  L  
Sbjct: 3   INLLDFDAKGLTGFCAEIG----EKPFRARQLLRWIHRTGEADFDAMSDLAKGLREKLAA 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P+++ +  + DGTRKWLL      +G    IETVYIPE SRGTLC+SSQVGC+L
Sbjct: 59  AAVIEPPKVISDHTASDGTRKWLL-----SVGAGNGIETVYIPETSRGTLCISSQVGCAL 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG Q   RNLT  EI+ Q+  A   L +    E           R I+NIVMMG
Sbjct: 114 ACAFCSTGRQGFNRNLTVAEIIGQLWWANKALTETFTSEA-------GRERPITNIVMMG 166

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV  SL +  D      S+RR+T+STSG +P + R+ E   V LA+SLHA 
Sbjct: 167 MGEPLTNFENVVTSLDLMLDDNAYGLSRRRVTVSTSGIIPAMDRLRERCPVALAVSLHAP 226

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVPINRKYP+  L+ AC  Y   +    ITFEYVML G+NDS   A  L++++
Sbjct: 227 NDALRDQLVPINRKYPIRELLGACERYLQSAPRDFITFEYVMLDGVNDSVAQARELVQLV 286

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + IP K+NLIPFNP+P   +  S    +  F + +  +G  + +R  RG DI AACGQL 
Sbjct: 287 RDIPCKLNLIPFNPFPDSGFRRSSANAVSRFRDVLMEAGLVTTVRKTRGDDIAAACGQLA 346

Query: 367 SLS-KRIPKVPRQEMQITG 384
                +  +VPR   +  G
Sbjct: 347 GKVLDKTRRVPRNIAEAAG 365


>gi|332530539|ref|ZP_08406478.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
           19624]
 gi|332040014|gb|EGI76401.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
           19624]
          Length = 404

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 144/383 (37%), Positives = 205/383 (53%), Gaps = 24/383 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +   +L+    + L     ++G      R R +Q+++WI+ RG  DF  MSD+++ +R  
Sbjct: 1   MTTANLLDFDLDGLVVFCERLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSLRAK 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L     I    ++ ++ S DGT KWL       +G    +E VYIPE  RGTLCVSSQ G
Sbjct: 57  LKTAAHIQGLPVITQQESADGTIKWLF-----DVGDGNAVEAVYIPEDDRGTLCVSSQAG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TG Q   RNL+  EI+ Q+  A      F        +      R I+N+V
Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTGEIVAQLWHAE----HFLRARRQHPLQPGEDHRVITNVV 167

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N+  +  +L +  D  G   S+RR+T+STSG VP + R+ E+  V LA+SL
Sbjct: 168 MMGMGEPLQNYAALVPALRVMLDDHGYGLSRRRLTVSTSGVVPMMERLSEDCPVALAVSL 227

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL- 302
           HA ++ LR+ LVP+NRKYP+  L+D C  Y   +    ITFEY ML G+ND P  A  L 
Sbjct: 228 HAPNDGLRDGLVPLNRKYPIHELLDTCLSYLAHAPRDFITFEYCMLDGVNDQPEHARELL 287

Query: 303 ----------IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
                       +  G+  K+NLIPFNP+P      S  + +  F++ +  +G  + +R 
Sbjct: 288 ALMQVFRQRAADLGHGVGCKLNLIPFNPFPESGLKRSPGERVQAFAKILLEAGIVTTVRK 347

Query: 353 PRGLDILAACGQLKSLSKRIPKV 375
            RG DI AACGQL    +    V
Sbjct: 348 TRGDDIDAACGQLAGDVQDRTSV 370


>gi|325526956|gb|EGD04412.1| radical SAM superfamily protein [Burkholderia sp. TJI49]
          Length = 379

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 148/378 (39%), Positives = 214/378 (56%), Gaps = 12/378 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+    E L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    +I  PEI  + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRATISMPEIASDHVSADGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   L    G             R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL  L+ AC+ Y  ++    ITFEY ML G+ND+   A 
Sbjct: 229 VSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDA 348

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366


>gi|309750216|gb|ADO80200.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus
           influenzae R2866]
          Length = 390

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 218/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 21  KKINLMDLTRQQMREFFKQLG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 77  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++L   P KINLIP+NP+P   Y  S    I  F + +   G++  IR  RG DI AAC
Sbjct: 301 AEVLNNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 360

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 361 GQLAGDV--IDRTKRTAMK 377


>gi|145631818|ref|ZP_01787577.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae
           R3021]
 gi|144982537|gb|EDJ90091.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae
           R3021]
          Length = 383

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPINRKY ++MLID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINRKYNIQMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 354 GQLAGDV--IDRTKRTAMK 370


>gi|205829858|sp|A5UAC2|RLMN_HAEIE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|309972476|gb|ADO95677.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus
           influenzae R2846]
          Length = 390

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 217/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 21  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 77  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 301 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 360

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 361 GQLAGDV--IDRTKRTAMK 377


>gi|238897947|ref|YP_002923627.1| radical SAM domain protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465705|gb|ACQ67479.1| radical SAM domain protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 393

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 166/380 (43%), Positives = 223/380 (58%), Gaps = 23/380 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+   R++L +  +KIG        R  QI KWIY     DF  M+DI++++R  L
Sbjct: 33  KKINLLDFNRQKLRDFFVKIG----EKPFRADQIMKWIYHYCYDDFSLMTDINKQLRDKL 88

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+  E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC
Sbjct: 89  QKIAEIRAPEVAKEQSSSDGTIKWAIKVGD------QQVETVYIPESDRATLCVSSQVGC 142

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL+  EI+ QV  A  ++G           +     R I+N+VM
Sbjct: 143 ALECRFCSTAQQGFNRNLSVSEIIGQVWRAAKIIG----------SLKSKGQRPITNVVM 192

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  +++I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 193 MGMGEPLLNINNVVPAMAIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 252

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A ++D+RN LVPINRKY +E L+ A R Y   SNA   R+T EYVML  +NDS + A  L
Sbjct: 253 APTDDIRNELVPINRKYNIETLLAAVRRYLTKSNANQGRVTIEYVMLNHVNDSLKQAHQL 312

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
              LK  P KINLIP+NP+PG +Y  S    I  F++ + +  +++ IR  RG DI AAC
Sbjct: 313 ADCLKNTPCKINLIPWNPFPGADYGRSSNSRIDRFAKVLMQYDFTTIIRKTRGNDIDAAC 372

Query: 363 GQLKSLS-KRIPKVPRQEMQ 381
           GQL      R  +  ++  +
Sbjct: 373 GQLAGDVIDRTKRTLKKNNR 392


>gi|320539274|ref|ZP_08038944.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen
           [Serratia symbiotica str. Tucson]
 gi|320030666|gb|EFW12675.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen
           [Serratia symbiotica str. Tucson]
          Length = 399

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/378 (41%), Positives = 219/378 (57%), Gaps = 26/378 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E   ++G        R  Q+ KW+Y     DF+ M++I++ +R+ L 
Sbjct: 32  KINLLDLNRQQMREFFSQMG----EKPFRADQVMKWMYHYCCDDFEQMTEINKVLRNKLQ 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+ +E+ S DGT KW ++          ++ETVYIP+  R TLCVSSQVGC+
Sbjct: 88  RVAEIRAPEVAEEQCSADGTIKWAIKVGD------QQVETVYIPDGDRATLCVSSQVGCA 141

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I+N+VMM
Sbjct: 142 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ALKIAGERPITNVVMM 191

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 192 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 251

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++ +RN +VPINR Y +E  + A R Y   SNA   R+T EYVML  INDS  DA  L 
Sbjct: 252 PNDKIRNEIVPINRNYNIESFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSTDDAHQLA 311

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LK  P KINLIP+NP+P   Y  S    +  F++ +   G+++ +R  RG DI AACG
Sbjct: 312 NVLKNTPCKINLIPWNPFPAAPYGRSSNSRVDRFAKVLMEYGFTTIVRRTRGDDIDAACG 371

Query: 364 QLKS----LSKRIPKVPR 377
           QL       +KR  K  R
Sbjct: 372 QLAGEVIDRTKRTLKKKR 389


>gi|260582543|ref|ZP_05850333.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           influenzae NT127]
 gi|260094354|gb|EEW78252.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           influenzae NT127]
          Length = 390

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 217/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 21  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 77  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 301 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 360

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 361 GQLAGDV--IDRTKRTAMK 377


>gi|312111725|ref|YP_003990041.1| radical SAM protein [Geobacillus sp. Y4.1MC1]
 gi|311216826|gb|ADP75430.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y4.1MC1]
          Length = 364

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 203/366 (55%), Gaps = 25/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+  +  E+L+  +++ G        R +QI++W+Y + +  F  M+++ + +R  L+ 
Sbjct: 19  PSIYSLTFEQLKNWIIEQG----EKPFRATQIYEWLYQKRVTHFSEMTNLPKTLREKLSG 74

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           HF I   + + ++ S DGT K+L             IETV +      ++CV++QVGC +
Sbjct: 75  HFDITTLKTLVKQTSKDGTMKFLFELHD-----GYSIETVLMRHNYGNSICVTTQVGCRI 129

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L R+L A EI+ QV+  +  L +                 +IS+IV+MG
Sbjct: 130 GCTFCASTLGGLKRHLEAGEIVAQVVKVQKELDE--------------QNERISSIVVMG 175

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEP  N+D + K L I + + GL+   R IT+STSG +P I +  +E + V  AISLHA
Sbjct: 176 IGEPFDNYDELIKFLKIVNHAKGLNIGARHITVSTSGIIPKIYQFADEGMQVNFAISLHA 235

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + +LR  L+PIN+ YPL  L+DA R+Y   +   R+TFEY +  G+ND    A  L ++
Sbjct: 236 PTTELRTKLMPINKAYPLPKLMDAVRYYIEKTGR-RVTFEYGLFGGVNDQLEHAEQLAEL 294

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KG+   +NLIP N  P   Y+ + ++ I  F   +K+ G +  IR  +G DI AACGQL
Sbjct: 295 IKGLKCHVNLIPVNYVPERNYVRTPREQIFAFERALKKHGINVTIRREQGHDIDAACGQL 354

Query: 366 KSLSKR 371
           ++  ++
Sbjct: 355 RAKERK 360


>gi|109899434|ref|YP_662689.1| hypothetical protein Patl_3129 [Pseudoalteromonas atlantica T6c]
 gi|109701715|gb|ABG41635.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudoalteromonas atlantica
           T6c]
          Length = 380

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 217/379 (57%), Gaps = 22/379 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+   R  L E    IG        R  Q+ KWIY  G+ DF  M+++++ +R  L 
Sbjct: 11  KINLLNFNRAGLREYFSSIG----EKPFRADQMMKWIYQAGVSDFDQMTNLNKALREKLK 66

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PEI  ++ + DGT K+ LR       G  E+ETV+IP++ R TLCVSSQVGC+
Sbjct: 67  AQCEVKAPEIAYQQGASDGTIKFALRLE-----GGQEVETVWIPDEDRATLCVSSQVGCA 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T  Q   RNL+  EI+ QV    + +G          +   S  R I+N+VMM
Sbjct: 122 LECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIG----------LSNDSAKRPITNVVMM 171

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ +  D +    SKRR+TLSTSG VP +  +G++I V LAISLHA
Sbjct: 172 GMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHA 231

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
             + LR+ +VPIN+KYP++  +   R Y   SNA   ++T EYVML GINDS   A  L 
Sbjct: 232 PDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L   P KINLIPFNP+PG  Y  S    I  F++ +   G    +R  RG DI AACG
Sbjct: 292 KVLADTPCKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACG 351

Query: 364 QL-KSLSKRIPKVPRQEMQ 381
           QL   +  R  ++ +++M+
Sbjct: 352 QLVGDVVDRTKRMLKKQMK 370


>gi|91784209|ref|YP_559415.1| hypothetical protein Bxe_A1592 [Burkholderia xenovorans LB400]
 gi|123358658|sp|Q13X26|RLMN_BURXL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|91688163|gb|ABE31363.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia xenovorans
           LB400]
          Length = 383

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 152/384 (39%), Positives = 220/384 (57%), Gaps = 10/384 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+ +  + L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSSPTVNLLDLDAQGLVAYCDSLG----EKPFRARQLQRWIHQYNAADFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    +I  P IV + IS DGTRKWL+      +G    +ETVYIPE++RGTLCVSS
Sbjct: 57  REKLKGRATISMPGIVSDHISTDGTRKWLI-----DVGNSNAVETVYIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
           Q GC++ C FC TG Q   RNLT  EI+ Q+ +A   L    G +          G ++ 
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASRGVDGGRATGGDGKGERVV 171

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S+ LR++LVP+N+KYPL  L+ AC+ Y  ++    ITFEY ML G+NDS   A
Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI 
Sbjct: 292 RELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLMDAGVITTVRKTRGDDID 351

Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
           AACGQL    K   ++  +  +  
Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375


>gi|170694776|ref|ZP_02885927.1| radical SAM enzyme, Cfr family [Burkholderia graminis C4D1M]
 gi|170140407|gb|EDT08584.1| radical SAM enzyme, Cfr family [Burkholderia graminis C4D1M]
          Length = 383

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 150/384 (39%), Positives = 219/384 (57%), Gaps = 10/384 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+ +  + L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSSSTVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    +I  P IV + IS DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRATISMPGIVSDHISTDGTRKWLIE-----VGNSNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179
           Q GC++ C FC TG Q   RNLT  EI+ Q+ +A   L    G      +     G ++ 
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASLGAAGGRAVGGEGKGERVV 171

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGM EPL N+D V  ++ +  D      S+RR+TLSTSG VP + R+G ++ V L
Sbjct: 172 TNVVMMGMAEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S+ LR++LVP+N+KYPL  L+ AC+ Y  ++    ITFEY ML G+NDS   A
Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI 
Sbjct: 292 RELLALTRDVPCKFNLIPFNPFPESGLVRSKSEQIKRFAQVLMDAGVVTTVRKTRGDDID 351

Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383
           AACGQL    K   ++  +  +  
Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375


>gi|205829853|sp|Q15R53|RLMN_PSEA6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 376

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 217/379 (57%), Gaps = 22/379 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+   R  L E    IG        R  Q+ KWIY  G+ DF  M+++++ +R  L 
Sbjct: 7   KINLLNFNRAGLREYFSSIG----EKPFRADQMMKWIYQAGVSDFDQMTNLNKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PEI  ++ + DGT K+ LR       G  E+ETV+IP++ R TLCVSSQVGC+
Sbjct: 63  AQCEVKAPEIAYQQGASDGTIKFALRLE-----GGQEVETVWIPDEDRATLCVSSQVGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T  Q   RNL+  EI+ QV    + +G          +   S  R I+N+VMM
Sbjct: 118 LECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIG----------LSNDSAKRPITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ +  D +    SKRR+TLSTSG VP +  +G++I V LAISLHA
Sbjct: 168 GMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
             + LR+ +VPIN+KYP++  +   R Y   SNA   ++T EYVML GINDS   A  L 
Sbjct: 228 PDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELA 287

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L   P KINLIPFNP+PG  Y  S    I  F++ +   G    +R  RG DI AACG
Sbjct: 288 KVLADTPCKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACG 347

Query: 364 QL-KSLSKRIPKVPRQEMQ 381
           QL   +  R  ++ +++M+
Sbjct: 348 QLVGDVVDRTKRMLKKQMK 366


>gi|148653702|ref|YP_001280795.1| radical SAM protein [Psychrobacter sp. PRwf-1]
 gi|205829828|sp|A5WGQ4|RLMN_PSYWF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|148572786|gb|ABQ94845.1| radical SAM enzyme, Cfr family [Psychrobacter sp. PRwf-1]
          Length = 403

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/386 (40%), Positives = 223/386 (57%), Gaps = 26/386 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +++GM +E+L      IG        R +Q+ KWIY  G+ DF  M+++S+ +R  L+
Sbjct: 23  KTNILGMNQEQLGAYFKHIG----EKPFRATQVMKWIYQHGVTDFAQMTNLSKGLREKLS 78

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120
           +   I  PE++ ++ S DGTRKW+ +     + G   +ETV IP        R TLC+SS
Sbjct: 79  EQACIELPEVMHKEFSEDGTRKWVFK-----VAGGSLVETVLIPADDSKVNGRKTLCISS 133

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L CSFC TG Q   R+LTA EI+ Q+ +A +   +        G+        ++
Sbjct: 134 QVGCALDCSFCSTGKQGFERDLTAAEIIGQLWVANASYME--------GVDSTEWQNNVT 185

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+  V  S+ +         SKRR+TLSTSG VP +  + ++I V LA
Sbjct: 186 NVVMMGMGEPLLNYTPVVSSMGLMLSDHAYGLSKRRVTLSTSGVVPKMYELYKDIDVALA 245

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP---GLSNARRITFEYVMLKGINDSPR 297
           ISLHA +++LRN LVPIN+KYPL  LI A + Y       + + +T EYVML G+NDS  
Sbjct: 246 ISLHAPNDELRNELVPINKKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVNDSDE 305

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L+ +L G+P+KINLIPFNP+P   Y  S    I  FS  +  +G+   IR  RG D
Sbjct: 306 HAQQLVALLDGLPSKINLIPFNPFPHAPYDRSSNNRIHAFSNILNNAGFVCTIRQTRGDD 365

Query: 358 ILAACGQL-KSLSKRIPKVPRQEMQI 382
           I AACGQL   ++ R  +  + +  I
Sbjct: 366 IDAACGQLVGQVADRTRRSAKWQQSI 391


>gi|270156690|ref|ZP_06185347.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
 gi|289164863|ref|YP_003455001.1| Fe-S containing enzyme [Legionella longbeachae NSW150]
 gi|269988715|gb|EEZ94969.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
 gi|288858036|emb|CBJ11896.1| putative Fe-S containing enzyme [Legionella longbeachae NSW150]
          Length = 376

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 170/374 (45%), Positives = 225/374 (60%), Gaps = 20/374 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+    +++ E L            R  QI +WI+  G+ DF  M+++ + +R  L
Sbjct: 4   QKVNLLNYNYQQMRELLSSW----DEQPYRAQQIIQWIHQAGLTDFAKMTNLGKTLREKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +Q   I  PEI+  + S DGT KWLL+           IETV+IPE +RGTLCVSSQVGC
Sbjct: 60  SQLSCIKLPEIIACQKSNDGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC T  Q   RNLT  EI+ QV LA   L    G  D          ++++N+VM
Sbjct: 115 ALNCSFCSTAKQGFNRNLTTAEIIGQVWLAVRELSQSQGNHD----------KRVTNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++ I  D      SKRR+TLSTSG +P++ R+ E   V LA+SLH
Sbjct: 165 MGMGEPLLNFDNVVSAMDIMMDDFAYGLSKRRVTLSTSGVLPDLERLREVSPVALAVSLH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++LRN LVPIN+KYPL  L+  C+ Y      R++TFEYVMLKG+ND P  A+ LIK
Sbjct: 225 APNDELRNELVPINKKYPLAQLMALCKIYFKNEPRRKVTFEYVMLKGVNDQPEHAIQLIK 284

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ IPAK+NLIPFNP+P  +Y  S Q+ I  F E +   G ++  R  RG DI AACGQ
Sbjct: 285 LLRNIPAKVNLIPFNPFPMTQYERSSQETIDAFREKLMAHGINTITRKTRGDDIDAACGQ 344

Query: 365 LKSLSK-RIPKVPR 377
           L    K R  +  R
Sbjct: 345 LAGEVKDRTTRSQR 358


>gi|241662752|ref|YP_002981112.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12D]
 gi|240864779|gb|ACS62440.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12D]
          Length = 383

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 148/372 (39%), Positives = 215/372 (57%), Gaps = 16/372 (4%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+      L      +G        R  Q+ +WI+  G  DF  M+D+++ +R  L  
Sbjct: 5   VNLLDFDAHGLLAYCESLG----EKSFRAKQLQRWIHQSGASDFGEMTDLAKSLREKLAT 60

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             +I  P ++ + +S DGTRKWL+      +G    +ETVYIPE++RGTLCVSSQ GC++
Sbjct: 61  RANIQAPAVITDHLSSDGTRKWLV-----DVGQGNAVETVYIPEETRGTLCVSSQAGCAV 115

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL+  EI+ Q+ +A   +    G         P   R I+N+VMMG
Sbjct: 116 NCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMRKQLGR-------GPKDDRVITNVVMMG 168

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+D V  +L++  D      S+RR+T+STSG VP + R+  ++ V LA+SLHA 
Sbjct: 169 MGEPLLNYDAVVPALALMLDDNAYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHAS 228

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR++LVP+N+KYPL  L+ ACR Y   +    ITFEY ML G+ND+   A  L++++
Sbjct: 229 NDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVV 288

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             +P K NLIPFNP+P      S+ + I  FS+ +  +G  + IR  RG DI AACGQL 
Sbjct: 289 ADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLA 348

Query: 367 SLSKRIPKVPRQ 378
              K   ++  +
Sbjct: 349 GEVKDRTRLAER 360


>gi|254786618|ref|YP_003074047.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
 gi|237685384|gb|ACR12648.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
          Length = 399

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 155/382 (40%), Positives = 226/382 (59%), Gaps = 19/382 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM +  LE     +G      + R +Q+ KW++  G+ DF  M++IS+ +R  L 
Sbjct: 19  KVNLLGMSQGRLEAFFESLG----EKKFRATQVLKWVHQLGVTDFAQMTNISKALRERLA 74

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE++++  S DGTRK+L+R     +GG   IETV+IP+  RGTLCVSSQVGCS
Sbjct: 75  DIAEVRIPEVIEQWDSTDGTRKFLIR-----VGGGNAIETVFIPDGERGTLCVSSQVGCS 129

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   R+LT++EI+ QV +A    G                 RK++N+V+M
Sbjct: 130 LDCSFCATGKQGFNRDLTSDEIIGQVWIAAKSFGQL-------QEGGARGDRKVTNVVLM 182

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV +++ +         SKRR+TLSTSG VP + R+G+     LAISLHA
Sbjct: 183 GMGEPLLNFENVVEAMHLMMHDNCYGISKRRVTLSTSGVVPQLDRLGKYTDACLAISLHA 242

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
            +++LRN LVPIN+KYP+  L+ + + Y        R+IT EY ++  +ND    A  L+
Sbjct: 243 PNDELRNQLVPINKKYPIAQLLASAKRYIEGLPDAHRKITIEYTLIDQVNDRIEHAHELV 302

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK +P KINLIPFNP+    Y       +  F + +  +GY++ +RT RG DI AACG
Sbjct: 303 ELLKDVPVKINLIPFNPFGLSNYKKVSNNALRRFQQILIDAGYTATVRTTRGDDIDAACG 362

Query: 364 QLKS-LSKRIPKVPRQEMQITG 384
           QL   ++ R  +  R ++    
Sbjct: 363 QLAGQVNDRTKRSQRYKLDQAA 384


>gi|16272313|ref|NP_438526.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           influenzae Rd KW20]
 gi|260580572|ref|ZP_05848400.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           influenzae RdAW]
 gi|1175973|sp|P44665|RLMN_HAEIN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|1573332|gb|AAC22023.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092914|gb|EEW76849.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
           influenzae RdAW]
          Length = 390

 Score =  448 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 218/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 21  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 77  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 301 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 360

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 361 GQLAGDV--IDRTKRTAMK 377


>gi|229846452|ref|ZP_04466560.1| hypothetical protein CGSHi7P49H1_07265 [Haemophilus influenzae
           7P49H1]
 gi|229810545|gb|EEP46263.1| hypothetical protein CGSHi7P49H1_07265 [Haemophilus influenzae
           7P49H1]
          Length = 383

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 218/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KTVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 354 GQLAGDV--IDRTKRTAMK 370


>gi|167854516|ref|ZP_02477297.1| hypothetical protein HPS_02019 [Haemophilus parasuis 29755]
 gi|167854271|gb|EDS25504.1| hypothetical protein HPS_02019 [Haemophilus parasuis 29755]
          Length = 386

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 157/383 (40%), Positives = 220/383 (57%), Gaps = 23/383 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++ +R  L
Sbjct: 18  EKINLLNLNRQQMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMTNINKVLREKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE+  E+ S DGT KW +           +IETVYIPE  R TLCVSSQVGC
Sbjct: 74  KRIAEIKAPEVAVEQRSADGTIKWAMWVGD------QQIETVYIPEDDRATLCVSSQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL+  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 128 ALACTFCSTAQQGFNRNLSVSEIIGQVWRASKIIGNFGV----------TGIRPITNVVM 177

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLSTSG VP + ++ E+I V LAISLH
Sbjct: 178 MGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLH 237

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LRN L+P+N+KY ++MLID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 238 APNDELRNELIPLNKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLSHVNDDVEHAHQL 297

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P+KINLIP+NP+P   Y  S    I  F + +   G++  +R  RG DI AAC
Sbjct: 298 ADVLKNTPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVTVRKTRGDDIHAAC 357

Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384
           GQL      R  +   +     G
Sbjct: 358 GQLAGDVIDRTKRTFEKRKFGEG 380


>gi|329912290|ref|ZP_08275720.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545652|gb|EGF30807.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 388

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 149/382 (39%), Positives = 221/382 (57%), Gaps = 19/382 (4%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +   +L+ +   +L     ++G        R  Q+ +WI+  G  DF  M+D+++ +R  
Sbjct: 1   MALTNLLDLDPAQLVAYCGELG----EKPFRAKQLQRWIHQFGASDFTAMTDLAKSLRDK 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L     +  P ++ +  S DGTRKWLL      +G    +ETV+IPE++RGTLC+S+Q G
Sbjct: 57  LATRAVVQSPAVISDHTSTDGTRKWLL-----DVGQGNAVETVFIPEENRGTLCISTQAG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TG Q   RNLT  EI+ Q+ +A   L    G E       P   R+I+N+V
Sbjct: 112 CAVNCRFCSTGKQGFNRNLTVGEIIGQLWMAEFELRKTKGIEPG-----PKGERQITNVV 166

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N++    +L +  D      S+RR+TLSTSG VPNI ++G++  V LA+SL
Sbjct: 167 MMGMGEPLLNYEPTVTALKLMLDDNAYGLSRRRVTLSTSGVVPNIDKLGQDCPVALAVSL 226

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++ LR+ LVP+N+KYPL+ L+ AC  Y   +    +TFEY ML G+ND+ + A  L+
Sbjct: 227 HASNDALRDSLVPLNKKYPLKELMAACVRYLEFAPRDFVTFEYCMLDGVNDTEQHARELV 286

Query: 304 KILKG----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            +++     +P K NLIPFNP+P      S+   I  F++ +  +G  + IR  RG DI 
Sbjct: 287 ALVRHGAQLVPCKFNLIPFNPFPESGLTRSNNPQIKLFAQVLMDAGIVTTIRKTRGDDID 346

Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381
           AACGQL    +   KV ++ MQ
Sbjct: 347 AACGQLAGEVQDRTKV-QERMQ 367


>gi|33597413|ref|NP_885056.1| hypothetical protein BPP2857 [Bordetella parapertussis 12822]
 gi|81579190|sp|Q7W6P5|RLMN_BORPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33573840|emb|CAE38149.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 382

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 148/383 (38%), Positives = 215/383 (56%), Gaps = 9/383 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  +++ +L+G+    L E + + G        R  Q+ +W++ RG   F  M+D++++ 
Sbjct: 1   MESVERVNLLGLDGAALSELVGQWG----GKPFRARQLQRWVHQRGADSFDAMTDLARDF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I    +  E+ S DGTRKWL       +G    IETV+IPE  RGTLC+SS
Sbjct: 57  RAQLARDCVIEALPVNTEQRSSDGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG Q   RNL A EI+ Q+  A+ +L        + G       R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVIS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  +L +  D      S+RR+T+STSG VP + R+ ++  + LA
Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPLALA 231

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+NRKYPL  L+ AC  Y   +    ITFEY ML GIND+ + A 
Sbjct: 232 VSLHAPNDALRDELVPLNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHAR 291

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI++ + +  K+NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI A
Sbjct: 292 ELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDA 351

Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
           ACGQL    +   ++  +    T
Sbjct: 352 ACGQLAGEVRDRTRITERNATRT 374


>gi|309782324|ref|ZP_07677051.1| radical SAM enzyme, Cfr family [Ralstonia sp. 5_7_47FAA]
 gi|308918942|gb|EFP64612.1| radical SAM enzyme, Cfr family [Ralstonia sp. 5_7_47FAA]
          Length = 383

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 147/372 (39%), Positives = 215/372 (57%), Gaps = 16/372 (4%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+    + L      +G        R  Q+ +WI+  G  DF  M+D+++ +R  L  
Sbjct: 5   VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGASDFGEMTDLAKSLREKLAT 60

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             +I  P ++ + +S DGTRKWL+      +G    +ETVYIPE++RGTLCVSSQ GC++
Sbjct: 61  RANIQAPAVITDHLSSDGTRKWLV-----DVGQGNAVETVYIPEETRGTLCVSSQAGCAV 115

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL+  EI+ Q+ +A   +    G         P   R I+N+VMMG
Sbjct: 116 NCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMRKQLGR-------GPKDDRVITNVVMMG 168

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+D V  +L++  D      S+RR+T+STSG VP + R+  ++ V LA+SLHA 
Sbjct: 169 MGEPLLNYDAVVPALALMLDDNAYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHAS 228

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR++LVP+N+KYPL  L+ AC  Y   +    ITFEY ML G+ND+   A  L++++
Sbjct: 229 NDALRDVLVPLNKKYPLAELMAACCRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVV 288

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             +P K NLIPFNP+P      S+ + I  FS+ +  +G  + IR  RG DI AACGQL 
Sbjct: 289 ADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLA 348

Query: 367 SLSKRIPKVPRQ 378
              K   ++  +
Sbjct: 349 GEVKDRTRLAER 360


>gi|206560249|ref|YP_002231013.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
 gi|254807159|sp|B4EAX1|RLMN_BURCJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|198036290|emb|CAR52186.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
          Length = 379

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 149/378 (39%), Positives = 215/378 (56%), Gaps = 12/378 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+    E L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    SI+ PEI  + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRASIVMPEIASDHVSTDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   L    G             R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL  L+ AC+ Y  ++    ITFEY ML G+ND+   A 
Sbjct: 229 VSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366


>gi|289207917|ref|YP_003459983.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix]
 gi|288943548|gb|ADC71247.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix]
          Length = 377

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 167/359 (46%), Positives = 223/359 (62%), Gaps = 21/359 (5%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+G  R +L E L + G P    R R +Q+ KW++ RG+ DF  M+D+S+ +R  L + 
Sbjct: 10  NLLGYSRSQLTELLAQWGEP----RFRATQLVKWMHQRGVTDFDAMTDVSRTLRERLARE 65

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             I  PEI  EK S DGT KW+LR           IETV+IPE  RGTLC+SSQVGC+L 
Sbjct: 66  TEIALPEIALEKASGDGTVKWVLRL-----ADGNAIETVFIPESGRGTLCISSQVGCALD 120

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC T  Q   RNLTA EI+ QV LA   L    G +           R +SN+V+MGM
Sbjct: 121 CTFCSTAQQGFNRNLTAAEIIGQVWLAMQRLPAPEGRQ-----------RAVSNVVLMGM 169

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N+D V  +  + +D      S+RR+TLSTSG VP + R+ E   V LA+SLHA +
Sbjct: 170 GEPLANYDAVVAACQLMTDDNAYGLSRRRVTLSTSGLVPALDRLSEHTDVALAVSLHAPN 229

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLIKIL 306
           ++LR+ LVPINRKYP+  L+++CR Y   + A   +TFEYV+L G+ND P  A  L  +L
Sbjct: 230 DELRDRLVPINRKYPIARLMESCRRYVEATGAHSGVTFEYVLLAGVNDRPEHANQLAGVL 289

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +GIP KINLIPFNP+PG  +    + DI  F   ++++GY + +R  RG DI AACGQL
Sbjct: 290 RGIPGKINLIPFNPFPGAPFDRPAEGDIERFERQLQKAGYVTTVRRTRGDDIDAACGQL 348


>gi|187478836|ref|YP_786860.1| hypothetical protein BAV2346 [Bordetella avium 197N]
 gi|123725044|sp|Q2KY87|RLMN_BORA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|115423422|emb|CAJ49956.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 382

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 146/380 (38%), Positives = 217/380 (57%), Gaps = 10/380 (2%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M+ ++  +L+G+  + L + + + G        R  Q+ +W++ R +  F  M+D++++ 
Sbjct: 1   MDTVEPINLLGLDAKALTDLVGQWG----GKPFRARQLQRWVHQRSVDSFDAMTDLARDF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L++   I    +  E+ S DGTRKWL       +G    IETV+IPE  RGTLC+SS
Sbjct: 57  RAQLSERAIIEALPVNIEQRSSDGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG Q   RNL   EI+ Q+  A+ +L    G   +         R IS
Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRTSEIIGQLWWAKRVLEADIGSARLANAGAEDT-RVIS 170

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  +L +  D  G   S+RR+T+STSG VP + R+ ++  V LA
Sbjct: 171 NVVMMGMGEPLLNYDQVLPALRLMLDDNGYGLSRRRVTVSTSGVVPMMDRLAQDCPVALA 230

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL+ L+ AC  Y   +    ITFEY ML GIND+ + A 
Sbjct: 231 VSLHAPNDALRDDLVPLNKKYPLKELLAACERYLAHAPRDFITFEYCMLDGINDTDQHAK 290

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI++ + +  K+NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI A
Sbjct: 291 ELIQLARQVRCKLNLIPFNPFPASGLKRSAAPRVKVFAQRLMDAGIITTVRKTRGDDIDA 350

Query: 361 ACGQLKSLSKRIPKVPRQEM 380
           ACGQL    K   ++  +  
Sbjct: 351 ACGQLAGEVKDRTRITERNA 370


>gi|126668577|ref|ZP_01739531.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17]
 gi|126626982|gb|EAZ97625.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17]
          Length = 370

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 161/375 (42%), Positives = 225/375 (60%), Gaps = 21/375 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM + +LE     +G      R R +Q+ +W++ RG+ DF  M+++S+ +R  L
Sbjct: 6   EKTNLLGMPKAKLEAYFESLG----EKRFRATQVLQWVHQRGVGDFDEMTNMSKPLRDKL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                +  PE+V ++++ DGTRKW++R           IETV IP+  RGTLCVSSQ+GC
Sbjct: 62  KLIAEVRGPEVVYDELAKDGTRKWVMRM-----DNGNNIETVLIPDGERGTLCVSSQIGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG +   RNLT+ EI+ QV  AR     +           P   R I+N+VM
Sbjct: 117 SLDCSFCSTGKRGFNRNLTSAEIIGQVWAARKTFMPY----------APGPDRPITNVVM 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++++  + +    SKRR+TLSTSG VP I ++GE   V LAISLH
Sbjct: 167 MGMGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTLSTSGVVPAIDKLGEVTDVSLAISLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDALNLI 303
           A +++LRN LVPIN+KYP+  L+ A R Y   L + R+ T EY ++ G+ND    A  L 
Sbjct: 227 AANDELRNQLVPINKKYPIAELLAATRRYLSRLPDKRKATIEYTLMAGVNDHVDQARELA 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L+G+P KINLIPFNP+P   Y          F   +  +GY + +R PRG DI AACG
Sbjct: 287 EVLRGLPCKINLIPFNPFPESGYERPSMNATRRFQTVLNEAGYIATVRMPRGDDIDAACG 346

Query: 364 QLKSLSK-RIPKVPR 377
           QL    + R  +  R
Sbjct: 347 QLVGKVEDRTRRSAR 361


>gi|93005478|ref|YP_579915.1| hypothetical protein Pcryo_0648 [Psychrobacter cryohalolentis K5]
 gi|123264706|sp|Q1QD22|RLMN_PSYCK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|92393156|gb|ABE74431.1| conserved hypothetical protein [Psychrobacter cryohalolentis K5]
          Length = 413

 Score =  448 bits (1152), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/380 (41%), Positives = 224/380 (58%), Gaps = 19/380 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM + +L +    IG        R++Q+ KWIY +G+ DF+ M+++S+ +R  L+
Sbjct: 32  KTNLLGMTQAQLADYFKSIG----EKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLS 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120
            +  +I P+++  + S DGTRKW+       + G   +ETV IP        R TLCVSS
Sbjct: 88  ANACVIPPKVIHRQYSDDGTRKWVFE-----VTGGSLVETVLIPADDSKLNGRKTLCVSS 142

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L CSFC TG Q   R+LTA EIL Q+ +A +        + +E +        ++
Sbjct: 143 QVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYM-TDENDSLENVDHSLWENNVT 201

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+  V  S+ +         SKRR+TLSTSG VP +  + +E+ V LA
Sbjct: 202 NVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAQELDVALA 261

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARRITFEYVMLKGINDSPR 297
           ISLHA +++LRN LVPIN+KYPLE L+ A R+Y       + + +T EYVML G+NDS  
Sbjct: 262 ISLHAPNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNE 321

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L+ +L  +P+KINLIPFNP+P   Y  S    I  FS  +  +G+   IR  RG D
Sbjct: 322 HAEQLVALLGNLPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTIRQTRGDD 381

Query: 358 ILAACGQL-KSLSKRIPKVP 376
           I AACGQL   ++ R  +  
Sbjct: 382 IDAACGQLVGQVADRTRRSA 401


>gi|332284656|ref|YP_004416567.1| hypothetical protein PT7_1403 [Pusillimonas sp. T7-7]
 gi|330428609|gb|AEC19943.1| hypothetical protein PT7_1403 [Pusillimonas sp. T7-7]
          Length = 386

 Score =  448 bits (1152), Expect = e-124,   Method: Composition-based stats.
 Identities = 151/381 (39%), Positives = 215/381 (56%), Gaps = 12/381 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M+  +  +L+G+    L + + + G        R  Q+ +W++ RG   F  M+D+++E 
Sbjct: 1   MSINESINLLGLDTPALTDLVGQWG----GKPFRAKQLQRWVHQRGADSFDDMTDLAREF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +H SI  P +  E+ S DGTRKWL       +G    +E V+IPE  RGTLC+SS
Sbjct: 57  RLQLAEHCSIAAPPVSIEQRSADGTRKWLF-----DVGKNNAVEAVFIPEDDRGTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL---LGDFPGCEDIEGMVIPSVGR 177
           Q GC++ C FC TG Q   RNLT  EI+ Q+  AR +             E    P   R
Sbjct: 112 QAGCTVACPFCSTGYQGFNRNLTTAEIIGQLWHARRVLQSDMQSARTVSTETQTAPDPAR 171

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            ISN+VMMGMGEPL N+D V  +L +  D      S+RR+T+STSG VP + R+G +  V
Sbjct: 172 VISNVVMMGMGEPLLNYDQVLGALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLGRDCPV 231

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA ++ LR+ LVP+NRK+PL  L+ AC  Y   +    ITFEY+ML G+ND+ +
Sbjct: 232 ALAVSLHAPNDALRDKLVPLNRKHPLAELLAACNRYLEHAPRDFITFEYIMLDGVNDTDQ 291

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  LI I + +  K NLIPFNP+P      S    +  F++ +  +G  + +R  RG D
Sbjct: 292 HARELITIAQQVRCKFNLIPFNPFPQSGLKRSPAARVRLFAQRLMDAGIVTTVRKTRGDD 351

Query: 358 ILAACGQLKSLSKRIPKVPRQ 378
           I AACGQL    K   ++ ++
Sbjct: 352 IAAACGQLAGDVKDRTRISQR 372


>gi|160900454|ref|YP_001566036.1| radical SAM protein [Delftia acidovorans SPH-1]
 gi|160366038|gb|ABX37651.1| radical SAM enzyme, Cfr family [Delftia acidovorans SPH-1]
          Length = 397

 Score =  448 bits (1152), Expect = e-124,   Method: Composition-based stats.
 Identities = 155/389 (39%), Positives = 211/389 (54%), Gaps = 28/389 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN     +L+    + L     ++G      R R +Q+++WI+ RG  DF  MSD+++ +
Sbjct: 24  MNT----NLLDFDLDGLAAYCEQLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSL 75

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L     I    ++ E +S DGT KWL       +GG   +E V+IPE  RGTLCVSS
Sbjct: 76  REKLKACAHITALPVLTEHVSADGTVKWLF-----DVGGGDAVEAVFIPEDDRGTLCVSS 130

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EIL Q+  A   L    G             R IS
Sbjct: 131 QAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHSLRKRLGT---------GGERVIS 181

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+  +  +L    D  G   S+RR+T+STSG VP I R+ ++  V +A
Sbjct: 182 NVVMMGMGEPLQNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDCAVAMA 241

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +++LR+ LVP+NRKYP+  L+DAC  Y   +    ITFEY ML G+ND P  A 
Sbjct: 242 VSLHAPNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHAR 301

Query: 301 NLIKILKGIP-----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
            LI++++         K NLIPFNP+P    L S    +  F+  +  +G  + +R  RG
Sbjct: 302 QLIELVRARGDGRSWCKFNLIPFNPFPASGLLRSPAARVTEFASLLSNAGIVTTVRKTRG 361

Query: 356 LDILAACGQLKSLSK-RIPKVPRQEMQIT 383
            DI AACGQL    K R     R   Q T
Sbjct: 362 DDIDAACGQLAGDVKDRTRAAERMARQRT 390


>gi|253575779|ref|ZP_04853114.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844822|gb|EES72835.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 348

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 128/365 (35%), Positives = 200/365 (54%), Gaps = 25/365 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +     EEL+E  +  G P      R  QI+ W+YV+ +  F  M+++S+ +R  L 
Sbjct: 2   KPFIYDYTLEELQEWAVSQGEPA----FRGGQIFDWLYVKRVSSFDEMTNLSKALRQKLA 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F+ +  + + +  S DGT K+L             IETV +      ++CV++QVGC 
Sbjct: 58  DEFAFVTLQEITKLESKDGTVKFLFGLHDD-----HAIETVIMKHNYGNSICVTTQVGCK 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L RNLT  EI+ QV+ A+ +              + + G ++S+IV+M
Sbjct: 113 VGCTFCASTLGGLKRNLTPGEIVAQVVQAQKI--------------LDAKGERVSSIVIM 158

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEP  N+D   K L I     GL+  +R IT+STSG VPNI R  +E   + LAIS+H
Sbjct: 159 GTGEPFENYDATMKFLRIMIHEKGLNIGQRHITVSTSGIVPNIYRFADENTQINLAISIH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR+ L+P+NR++P + +++A R+Y   +   RITFEY ++ G+ND P  A  L  
Sbjct: 219 APNDALRSKLMPVNRRFPFDDVMEALRYYIAKTGR-RITFEYALIGGVNDQPEHAEELAD 277

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++K +   +NLIP N  P  +Y+ + + DI  F   +   G +  IR  +G DI AACGQ
Sbjct: 278 VIKDMLCHVNLIPVNYVPERKYVRTSRNDIFKFQRILADKGINVTIRREQGHDIAAACGQ 337

Query: 365 LKSLS 369
           L++  
Sbjct: 338 LRAKH 342


>gi|145632612|ref|ZP_01788346.1| hypothetical protein CGSHi3655_02319 [Haemophilus influenzae 3655]
 gi|144986807|gb|EDJ93359.1| hypothetical protein CGSHi3655_02319 [Haemophilus influenzae 3655]
          Length = 383

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 159/379 (41%), Positives = 217/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M +I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMININKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++MLID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 294 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 354 GQLAGDV--IDRTKRTAMK 370


>gi|145634639|ref|ZP_01790348.1| hypothetical protein CGSHiAA_05421 [Haemophilus influenzae PittAA]
 gi|229844547|ref|ZP_04464687.1| hypothetical protein CGSHi6P18H1_09535 [Haemophilus influenzae
           6P18H1]
 gi|145268184|gb|EDK08179.1| hypothetical protein CGSHiAA_05421 [Haemophilus influenzae PittAA]
 gi|229812796|gb|EEP48485.1| hypothetical protein CGSHi6P18H1_09535 [Haemophilus influenzae
           6P18H1]
          Length = 383

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 217/379 (57%), Gaps = 24/379 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R  L
Sbjct: 14  KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PE+  E+ S DGT KW ++       G  ++ETVYIPE  R TLCVSSQVGC
Sbjct: 70  KVVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLH
Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +++LR+ +VPIN+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L
Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIP+NP+P   Y  S    I  F + +    ++  IR  RG DI AAC
Sbjct: 294 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL      I +  R  M+
Sbjct: 354 GQLAGDV--IDRTKRTAMK 370


>gi|71065245|ref|YP_263972.1| hypothetical protein Psyc_0679 [Psychrobacter arcticus 273-4]
 gi|123748144|sp|Q4FTX0|RLMN_PSYA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|71038230|gb|AAZ18538.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 409

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 157/380 (41%), Positives = 224/380 (58%), Gaps = 19/380 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM + +L +    IG        R++Q+ KWIY +G+ DF+ M+++S+ +R  L+
Sbjct: 28  KTNLLGMTQAQLADYFKSIG----EKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLS 83

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120
            +  +I P+++  + S DGTRKW+       + G   +ETV IP        R TLC+SS
Sbjct: 84  ANACVIPPKVIHRQYSDDGTRKWVFE-----VTGGSLVETVLIPADDSKLNGRKTLCISS 138

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L CSFC TG Q   R+LTA EIL Q+ +A +        + +E +        ++
Sbjct: 139 QVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYMS-DENDSLENIDHSLWENNVT 197

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+  V  S+ +         SKRR+TLSTSG VP +  + +E+ V LA
Sbjct: 198 NVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAKELDVALA 257

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARRITFEYVMLKGINDSPR 297
           ISLHA +++LRN LVPIN+KYPLE L+ A R+Y       + + +T EYVML G+NDS  
Sbjct: 258 ISLHAPNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNE 317

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L+ +L  +P+KINLIPFNP+P   Y  S    I  FS  +  +G+   IR  RG D
Sbjct: 318 HAEQLVALLGDLPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTIRQTRGDD 377

Query: 358 ILAACGQL-KSLSKRIPKVP 376
           I AACGQL   ++ R  +  
Sbjct: 378 IDAACGQLVGQVADRTRRSA 397


>gi|254292458|ref|YP_003058481.1| radical SAM enzyme, Cfr family [Hirschia baltica ATCC 49814]
 gi|254040989|gb|ACT57784.1| radical SAM enzyme, Cfr family [Hirschia baltica ATCC 49814]
          Length = 390

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 195/378 (51%), Positives = 267/378 (70%), Gaps = 15/378 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L G+   +L E + +IGI ++  +MR +Q+  W++  G+ DF  M++I++++R  L +
Sbjct: 20  VNLSGLSLVKLRERMEEIGIDKKKAKMRANQVSHWMHNFGVTDFDDMTNIAKDMRAKLVE 79

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125
           +  I  P+I + K+S DGT+KWL RF     G  +E E+V+IP+ +R G LCVSSQVGC+
Sbjct: 80  NHIIARPDITEHKVSVDGTQKWLSRF-----GPGIEAESVFIPDVARSGALCVSSQVGCT 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L+C+FC+TGTQK+VRNLTA+EI+ QVL+AR  LG++P          PS  RK++NIV M
Sbjct: 135 LSCTFCHTGTQKMVRNLTAQEIVAQVLVARDTLGEWP---------TPSENRKLTNIVFM 185

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N DNV +++   SD  G+S  +RRIT+ST+G  P I  +G     MLAISLHA
Sbjct: 186 GMGEPLYNLDNVVEAIDTISDCEGISIGRRRITVSTAGVAPKIPELGARTNAMLAISLHA 245

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++DLR+ +VPIN+KY LE L DA R YP L N++R+TFEYVMLK +NDS  +A++LIK+
Sbjct: 246 TNDDLRDEIVPINKKYNLECLFDAIRSYPDLGNSKRVTFEYVMLKDVNDSLAEAVDLIKL 305

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+PAKINLIPFNPWPG  Y CSD   I TF+E + R+G S+PIRTPRG DI AACGQL
Sbjct: 306 LKGLPAKINLIPFNPWPGSPYECSDWDKIETFAEVLNRAGLSAPIRTPRGRDIFAACGQL 365

Query: 366 KSLSKRIPKVPRQEMQIT 383
           +S S +     R + +I 
Sbjct: 366 RSESIKERASDRLKAKIA 383


>gi|114797352|ref|YP_762004.1| radical SAM protein [Hyphomonas neptunium ATCC 15444]
 gi|122942041|sp|Q0BWY9|RLMN_HYPNA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|114737526|gb|ABI75651.1| radical SAM enzyme, Cfr family [Hyphomonas neptunium ATCC 15444]
          Length = 387

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/380 (50%), Positives = 263/380 (69%), Gaps = 15/380 (3%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L G+    L+  +  +G+  +   MR  QI +WI+  G  DF  M+DI++++R  L 
Sbjct: 17  KKRLTGLSVPALKAEMEALGLEPKAANMRARQIRRWIHHFGTTDFAAMTDIAKDLRAQLA 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
           + F +  PEI D ++S DGT+KWL R+     G  +E E+VYIP+  + G LCVSSQVGC
Sbjct: 77  EKFEVERPEIADHQVSRDGTQKWLTRY-----GPGIEGESVYIPDVGKAGALCVSSQVGC 131

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ LVRNLTA EI+ QV++AR  L ++P   +          R+++NIV 
Sbjct: 132 TLNCTFCHTGTQALVRNLTAAEIVQQVIIARDALSEWPSSIE---------ERRLTNIVF 182

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N DNV +++   SD  G++  +RRIT+ST+G  P I  +GE  G MLAISLH
Sbjct: 183 MGMGEPLYNLDNVAEAIDTISDGDGMAIGRRRITVSTAGVAPKIPELGERTGAMLAISLH 242

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLRN LVP+NRKY ++ L DA R YPGL NA+R+TFEYVMLKGIND+  +A +L+K
Sbjct: 243 ATNNDLRNELVPLNRKYDIQTLFDAIRAYPGLGNAKRVTFEYVMLKGINDTLAEARDLVK 302

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KG+P+KINLIPFNPWPG  Y CSD + I  F+E + R+GY+SPIRTPRG DILAACGQ
Sbjct: 303 LMKGVPSKINLIPFNPWPGSPYECSDWETIEEFAEVLNRAGYASPIRTPRGRDILAACGQ 362

Query: 365 LKSLSKRIPKVPRQEMQITG 384
           L+S S ++     ++ Q + 
Sbjct: 363 LRSESVKVRASELRKQQASA 382


>gi|307822494|ref|ZP_07652725.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96]
 gi|307736098|gb|EFO06944.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96]
          Length = 370

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 168/380 (44%), Positives = 237/380 (62%), Gaps = 25/380 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           K  +L+   R+ L    +++G        R +Q+ KWIY  G+ DF  M+++S+ +R  L
Sbjct: 11  KTINLLDFDRKGLAAFFVELG----EKPFRATQLLKWIYQEGVEDFDLMTNLSKSLRAYL 66

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            ++  I  PEIV EK++ DGT KW+++      G    IETV+IPE+ RGTLCVSSQ+GC
Sbjct: 67  TENCYIATPEIVLEKVATDGTCKWVMQT-----GCGNRIETVFIPEEGRGTLCVSSQIGC 121

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNLT  EI+ Q+ +A+  LG                G +I+N+VM
Sbjct: 122 ALACTFCSTAQQGFNRNLTTAEIIGQLFVAQKRLGP---------------GNRITNVVM 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++++  D      SKRR+T+STSG VP + R+ +   V LA+SLH
Sbjct: 167 MGMGEPLLNFDNVVAAMNLMMDDFTFGLSKRRVTISTSGVVPAMYRLTQVCDVSLAVSLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV+++LR+ LVPIN+KYPL+ L++ACR    ++  R +TFEYVML GINDS +DA  L+K
Sbjct: 227 AVTDELRDELVPINKKYPLKELMEACRDNAKIAPRRTVTFEYVMLDGINDSLQDARGLVK 286

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK +P+KINLIPFNP+P   Y CS ++ I  F   +  +G  + +R  RG DI AACGQ
Sbjct: 287 LLKTVPSKINLIPFNPFPNSAYRCSSKEAINCFKTLLNDAGIVTTVRKTRGEDIDAACGQ 346

Query: 365 LKSLSKRIPKVPRQEMQITG 384
           L    K   +    ++Q  G
Sbjct: 347 LVGQVKDKSR-RHLKIQPAG 365


>gi|221198083|ref|ZP_03571129.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2M]
 gi|221204358|ref|ZP_03577375.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2]
 gi|221212767|ref|ZP_03585743.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD1]
 gi|221166980|gb|EED99450.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD1]
 gi|221175215|gb|EEE07645.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2]
 gi|221182015|gb|EEE14416.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2M]
          Length = 378

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/378 (39%), Positives = 216/378 (57%), Gaps = 12/378 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+    E L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    SI  P+IV + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRASITMPDIVSDHVSADGTRKWLV-----DVGNGNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   L    G             R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N++ V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A 
Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDA 348

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366


>gi|78066584|ref|YP_369353.1| hypothetical protein Bcep18194_A5115 [Burkholderia sp. 383]
 gi|123770007|sp|Q39FQ7|RLMN_BURS3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|77967329|gb|ABB08709.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia sp. 383]
          Length = 379

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 149/378 (39%), Positives = 214/378 (56%), Gaps = 12/378 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+    E L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSETTVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    SI  PEI  + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRASIGMPEIASDHVSTDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   L    G             R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL  L+ AC+ Y  ++    ITFEY ML G+ND+   A 
Sbjct: 229 VSLHAPNDPLRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366


>gi|319790295|ref|YP_004151928.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
 gi|317114797|gb|ADU97287.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
          Length = 345

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 153/362 (42%), Positives = 217/362 (59%), Gaps = 26/362 (7%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
             +   EL+E +  +G        R  QI +W+Y + +  F  M+++S+E R LL++   
Sbjct: 5   KDLTLPELKEFVTSLGFEP----YRAKQIAQWLYKKRVSSFDQMTNLSKEARKLLSEKAQ 60

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           I   ++V  + S DGTRK+L             IE+V+IPEK   TLCVS+QVGC   C 
Sbjct: 61  IDLLKLVKVEESKDGTRKYLFELED-----GSRIESVFIPEKDWNTLCVSTQVGCPAGCR 115

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC T      RNLTA EI+ Q +  +  +G+                R+ISN+V MGMGE
Sbjct: 116 FCLTAKDGFTRNLTAGEIVDQYIQVQRDVGE---------------NRRISNVVFMGMGE 160

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSN 248
           PL NFDNVKK++ I +    L  S R++T+ST G VP I R+ +E+  V LA+SLHA ++
Sbjct: 161 PLLNFDNVKKAVEIMTHRDMLDLSTRKVTVSTVGIVPGIDRMAKEMNKVKLAVSLHATTD 220

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           ++RN+LVP+NRKYP+  ++ A R YP  +N  RI  EYVMLKG+NDS  DA  L+K++KG
Sbjct: 221 EVRNMLVPLNRKYPIGEIMAALRRYPADNNR-RIMIEYVMLKGVNDSLEDARRLVKLVKG 279

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           IP K+NLIPFNP+PG E+  + ++ I  F + +     ++ IR  RG DI AACG L++ 
Sbjct: 280 IPVKVNLIPFNPYPGAEFEPTPREQIEAFQKVLWDHNIAAFIRDSRGQDISAACGMLRTK 339

Query: 369 SK 370
            K
Sbjct: 340 EK 341


>gi|134295845|ref|YP_001119580.1| radical SAM protein [Burkholderia vietnamiensis G4]
 gi|205829687|sp|A4JEP2|RLMN_BURVG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|134139002|gb|ABO54745.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia vietnamiensis
           G4]
          Length = 379

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 147/378 (38%), Positives = 215/378 (56%), Gaps = 12/378 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+    E L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    +I  PEI  + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRATIGMPEIASDHVSADGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   L    G             R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N++ V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A 
Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366


>gi|205829861|sp|A9BMV6|RLMN_DELAS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 374

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 155/389 (39%), Positives = 211/389 (54%), Gaps = 28/389 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN     +L+    + L     ++G      R R +Q+++WI+ RG  DF  MSD+++ +
Sbjct: 1   MNT----NLLDFDLDGLAAYCEQLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSL 52

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L     I    ++ E +S DGT KWL       +GG   +E V+IPE  RGTLCVSS
Sbjct: 53  REKLKACAHITALPVLTEHVSADGTVKWLF-----DVGGGDAVEAVFIPEDDRGTLCVSS 107

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EIL Q+  A   L    G             R IS
Sbjct: 108 QAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHSLRKRLGT---------GGERVIS 158

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+  +  +L    D  G   S+RR+T+STSG VP I R+ ++  V +A
Sbjct: 159 NVVMMGMGEPLQNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDCAVAMA 218

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +++LR+ LVP+NRKYP+  L+DAC  Y   +    ITFEY ML G+ND P  A 
Sbjct: 219 VSLHAPNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHAR 278

Query: 301 NLIKILKGIP-----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
            LI++++         K NLIPFNP+P    L S    +  F+  +  +G  + +R  RG
Sbjct: 279 QLIELVRARGDGRSWCKFNLIPFNPFPASGLLRSPAARVTEFASLLSNAGIVTTVRKTRG 338

Query: 356 LDILAACGQLKSLSK-RIPKVPRQEMQIT 383
            DI AACGQL    K R     R   Q T
Sbjct: 339 DDIDAACGQLAGDVKDRTRAAERMARQRT 367


>gi|187928149|ref|YP_001898636.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12J]
 gi|254807195|sp|B2U9U6|RLMN_RALPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|187725039|gb|ACD26204.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12J]
          Length = 383

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 147/372 (39%), Positives = 216/372 (58%), Gaps = 16/372 (4%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+    + L      +G        R  Q+ +WI+  G  +F  M+D+++ +R  L  
Sbjct: 5   VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGASEFGEMTDLAKSLREKLAT 60

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             +I  P ++ + +S DGTRKWL+      +G    +ETVYIPE++RGTLCVSSQ GC++
Sbjct: 61  RANIQAPAVISDHLSSDGTRKWLV-----DVGQGNAVETVYIPEETRGTLCVSSQAGCAV 115

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL+  EI+ Q+ +A   +    G         P   R I+N+VMMG
Sbjct: 116 NCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMRKQLGR-------GPKDDRVITNVVMMG 168

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+D V  +L++  D      S+RR+T+STSG VP + R+  ++ V LA+SLHA 
Sbjct: 169 MGEPLLNYDAVVPALALMLDDNAYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHAS 228

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR++LVP+N+KYPL  L+ ACR Y   +    ITFEY ML G+ND+   A  L++++
Sbjct: 229 NDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVV 288

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             +P K NLIPFNP+P      S+ + I  FS+ +  +G  + IR  RG DI AACGQL 
Sbjct: 289 ADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLA 348

Query: 367 SLSKRIPKVPRQ 378
              K   ++  +
Sbjct: 349 GEVKDRTRLAER 360


>gi|192359958|ref|YP_001981965.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
 gi|190686123|gb|ACE83801.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
          Length = 402

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 159/375 (42%), Positives = 218/375 (58%), Gaps = 21/375 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+GM   +L      IG      + R  Q+ KWI+  G  +F  MS++S+ +R  L 
Sbjct: 32  KVNLLGMPEAKLIAFFESIG----EKKFRAIQVMKWIHQLGADNFDDMSNVSKALRAKLK 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V +  S DGTRK+L+R     + G   +ETV+IP+  RGTLCVSSQVGCS
Sbjct: 88  DCAEIYAPEVVRQLDSADGTRKFLIR-----VAGGNVVETVFIPDGDRGTLCVSSQVGCS 142

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   R+LTA EI+ QV +A    G           +  +  R ++N+VMM
Sbjct: 143 LDCSFCATGKQGFNRDLTAAEIIGQVWIAAKSFGQ----------LQANGPRTVTNVVMM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++++         SKRR+TLSTSG VP + R+ +     LAISLHA
Sbjct: 193 GMGEPLLNFDNVVDAMNLMMHDNAYGISKRRVTLSTSGVVPQLDRLSQYTDACLAISLHA 252

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRDALNLI 303
            +++LRN LVPINRKYP+ ML+D+ R Y        R+IT EY ++  +ND P+ A  L 
Sbjct: 253 PNDELRNELVPINRKYPIAMLLDSARRYIQSMPDTHRKITIEYTLIDQVNDRPQHAQQLA 312

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L+ +P KINLIPFNP+    Y       +  F + + + GY + +RT RG DI AACG
Sbjct: 313 ELLRDVPVKINLIPFNPFNLSNYKRVSNNALRKFQDILMQEGYITTVRTTRGDDIDAACG 372

Query: 364 QLKSLSKRIPKVPRQ 378
           QL      I +   +
Sbjct: 373 QLAGSVNDITRRSER 387


>gi|33151554|ref|NP_872907.1| hypothetical protein HD0319 [Haemophilus ducreyi 35000HP]
 gi|81423849|sp|Q7VNZ4|RLMN_HAEDU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33147774|gb|AAP95296.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 393

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 159/378 (42%), Positives = 218/378 (57%), Gaps = 23/378 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ M R+E+ E L  +G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKVNLMNMTRQEMREFLANLG----EKPFRADQLMKWIYHFGEDEFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  P I  E+ S DGT KW ++       G  +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KKVAEIKAPAIAIEQRSSDGTIKWAMQV------GNQQIETVYIPEGDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 135 ALECKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGI----------TGVRPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP +  + E+I V LAISLH
Sbjct: 185 MGMGEPLLNMNNVIPAMQIMLDDFAYGLSKRRVTLSTAGVVPALDLMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
           A +N+LRN ++PIN+KY ++ML+D+   Y  +SNA   ++T EYV+L  +ND    A  L
Sbjct: 245 APNNELRNEIMPINKKYNIKMLMDSVAKYLAVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI AAC
Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364

Query: 363 GQLKSLS-KRIPKVPRQE 379
           GQL      R  +   + 
Sbjct: 365 GQLAGEVIDRTKRTLEKR 382


>gi|292491212|ref|YP_003526651.1| radical SAM protein [Nitrosococcus halophilus Nc4]
 gi|291579807|gb|ADE14264.1| radical SAM enzyme, Cfr family [Nitrosococcus halophilus Nc4]
          Length = 372

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/384 (42%), Positives = 228/384 (59%), Gaps = 20/384 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M    + +L+ + R  LE    ++G        R  Q+ +W++ + + DF  M+D+S+ +
Sbjct: 1   MMTDSRINLLNLDRVGLEAFFARLG----EKPFRARQMLRWLHQQFVTDFSAMTDLSKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  PE+V +  S DGT KWLLR     + G   IETV+IPE+ RGTLCVSS
Sbjct: 57  RARLAETAVIALPEVVHQHHSTDGTYKWLLR-----VSGGNCIETVFIPEEDRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC L CSFC TG Q   RNL   EI+ Q+ LA   LG  P  E           R I+
Sbjct: 112 QVGCILDCSFCATGKQGFNRNLGVSEIIGQLWLANKALGRDPKGE-----------RIIT 160

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL NF+NV  ++++  D      S RR+TLST+G VP + R+     V LA
Sbjct: 161 NVVMMGMGEPLANFNNVVAAMNLMLDDFSYGLSWRRVTLSTAGMVPAMDRLRAICPVSLA 220

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +++LR+ LVP+N++YP+  L+ ACR Y      R +TFEYVML G+NDS + A 
Sbjct: 221 VSLHAPTDELRDELVPLNKRYPIGELLAACRRYVAGDRRRAVTFEYVMLAGVNDSLQHAR 280

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+++L+G+PAK+NLIPFNP+PG  Y  SD + I  F E + R G  +  R  RG DI A
Sbjct: 281 ALLRLLQGLPAKVNLIPFNPFPGSLYRRSDTETIDRFREELLRGGLMTVTRKTRGDDIAA 340

Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
           ACGQL    +   +    + ++ G
Sbjct: 341 ACGQLAGRVQDRTRRTLNQQRVAG 364


>gi|222110300|ref|YP_002552564.1| radical sam enzyme, cfr family [Acidovorax ebreus TPSY]
 gi|221729744|gb|ACM32564.1| radical SAM enzyme, Cfr family [Acidovorax ebreus TPSY]
          Length = 383

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 150/382 (39%), Positives = 211/382 (55%), Gaps = 25/382 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+    + L     ++G      R R +Q+++WI+ RG  DF  MSD+++ +R  L  
Sbjct: 12  TNLLDFDLDGLAAFCERLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLRG 67

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +   + + E +S DGT KWL       +G    +ETV+IPE  RGTLC+SSQ GC++
Sbjct: 68  CAHVAGLQAISEHVSADGTVKWLF-----DVGDGNAVETVFIPEDDRGTLCISSQAGCAV 122

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNLT  EIL Q+  A   L    G             R ISN+VMMG
Sbjct: 123 GCRFCSTGHQGFSRNLTTGEILAQLWYAEHALRQRRG----------DGERVISNVVMMG 172

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  +  +L +  D  G   S+RR+T+STSG VP + R+ ++  V LA+SLHA 
Sbjct: 173 MGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAP 232

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+NRKYPL  L+ ACR Y   +    ITFEY ML+G+ND P  A  LI ++
Sbjct: 233 NDVLRDNLVPLNRKYPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPEHARQLIDLV 292

Query: 307 ------KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
                  G+  K NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI A
Sbjct: 293 GRKAADGGVSCKFNLIPFNPFPASGLRRSPPAAVTAFAQLLSDAGIVTTVRKTRGDDIDA 352

Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382
           ACGQL    K   +V  +  ++
Sbjct: 353 ACGQLAGDVKDRTRVNERMAKL 374


>gi|107029007|ref|YP_626102.1| hypothetical protein Bcen_6265 [Burkholderia cenocepacia AU 1054]
 gi|116689835|ref|YP_835458.1| radical SAM protein [Burkholderia cenocepacia HI2424]
 gi|170733174|ref|YP_001765121.1| radical SAM protein [Burkholderia cenocepacia MC0-3]
 gi|123179922|sp|Q1BGX6|RLMN_BURCA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829678|sp|B1JT94|RLMN_BURCC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829679|sp|A0K7T8|RLMN_BURCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|105898171|gb|ABF81129.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia cenocepacia AU
           1054]
 gi|116647924|gb|ABK08565.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia cenocepacia
           HI2424]
 gi|169816416|gb|ACA90999.1| radical SAM enzyme, Cfr family [Burkholderia cenocepacia MC0-3]
          Length = 379

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/378 (39%), Positives = 215/378 (56%), Gaps = 12/378 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+    E L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    SI+ P+I  + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRASIVMPDIASDHVSTDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   L    G             R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL  L+ AC+ Y  ++    ITFEY ML G+ND+   A 
Sbjct: 229 VSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366


>gi|145589473|ref|YP_001156070.1| radical SAM protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|205829801|sp|A4SYE2|RLMN_POLSQ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145047879|gb|ABP34506.1| 23S rRNA m(2)A-2503 methyltransferase [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 402

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/380 (38%), Positives = 217/380 (57%), Gaps = 13/380 (3%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            + +L+    +++   +  +         R  Q+ +WI+ RG+ D   MSD+++  R  L
Sbjct: 4   PRVNLLDFDADQMAAYVAGL----NEKPFRAKQLMQWIHQRGVSDINDMSDLAKSFRATL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                ++   ++ ++ + DGTRKWLL      +G    +E+V+IPE  RGTLC+SSQ GC
Sbjct: 60  LDKVEVLSLPVIKDEHATDGTRKWLL-----DVGAGNAVESVFIPEDDRGTLCISSQAGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC----EDIEGMVIPSVGRKIS 180
           ++ C FC TG Q   RNLT+ EI+ Q+  A  LL + P      E          GR IS
Sbjct: 115 AVNCRFCSTGRQGFSRNLTSGEIIGQLWFAEHLLRNDPEAIRRIEKYPTPGWEHTGRVIS 174

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+DNV  +L +  D      S+RR+T+STSG VP I R+ ++  V LA
Sbjct: 175 NVVMMGMGEPLLNYDNVVSALRLMLDDRAYGLSRRRVTVSTSGVVPMIDRLAQDCPVALA 234

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL  L+DAC  Y   +    +TFEY ML G+NDS   A 
Sbjct: 235 VSLHAPNDALRDQLVPLNQKYPLRELLDACERYLPFAPRDFLTFEYCMLDGVNDSDIQAK 294

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+++L+ I  KINLIPFNP+P      S  + +  F+  +  +G  + +R  RG DI A
Sbjct: 295 ELVRLLRNIKCKINLIPFNPFPESGLKRSSAQRVNAFAGILLDAGMVATVRKTRGDDIAA 354

Query: 361 ACGQLKSLSKRIPKVPRQEM 380
           ACGQL        +V  +++
Sbjct: 355 ACGQLAGDVVDRTRVRERDI 374


>gi|171059552|ref|YP_001791901.1| radical SAM protein [Leptothrix cholodnii SP-6]
 gi|205829645|sp|B1XXL6|RLMN_LEPCP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|170776997|gb|ACB35136.1| radical SAM enzyme, Cfr family [Leptothrix cholodnii SP-6]
          Length = 393

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 149/384 (38%), Positives = 207/384 (53%), Gaps = 18/384 (4%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +   +L+    + L     ++G      R R  Q+++WI+ RG  DF  MSD+++ +R  
Sbjct: 1   MTAVNLLDFDLDALAAYCEQLG----EKRFRAVQLFRWIHQRGAADFGQMSDLAKSLRSK 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L     I    ++ E  S DGT KWL       +G    +ETVYIPE  R TLC+SSQ G
Sbjct: 57  LADVACIAPLRVLSEHRSSDGTIKWLF-----DVGDGNAVETVYIPEDDRATLCISSQAG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR---SLLGDFPGCEDIEGMVIPSVGRKIS 180
           C++ C FC TG Q   RNL+  EIL Q+  A                     P+  R IS
Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTAEILAQLWYAEHSLRRERAEGVSVGARAATGPASERIIS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+  V  +L +  D  G   S+RR+T+STSG VP I R+  ++ V LA
Sbjct: 172 NVVMMGMGEPLQNYAAVLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAADLPVALA 231

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA  + LR++LVP+NRKYPL  L+ AC+ Y   +    ITFEY ML G+NDS   A 
Sbjct: 232 VSLHACDDALRDVLVPLNRKYPLAELLGACQAYLASAPRDFITFEYCMLDGVNDSDEQAR 291

Query: 301 NLIKILKG------IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            L+K++        +P K NLIPFNP+P      S  + +  F++ +   G  + +R  R
Sbjct: 292 ALLKLVGDKGPVGRLPCKFNLIPFNPFPESGLKRSGNERVQAFAQVLIDGGLVTTVRKTR 351

Query: 355 GLDILAACGQLKSLSKRIPKVPRQ 378
           G DI AACGQL    +   +V  +
Sbjct: 352 GDDIDAACGQLAGEVQDRTRVQER 375


>gi|167587047|ref|ZP_02379435.1| radical SAM enzyme, Cfr family protein [Burkholderia ubonensis Bu]
          Length = 379

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/378 (39%), Positives = 217/378 (57%), Gaps = 12/378 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+    E L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    SI+ P+IV + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRASIVMPDIVSDHVSTDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   L    G             R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR++LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A 
Sbjct: 229 VSLHAPNDALRDMLVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDA 348

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366


>gi|52425971|ref|YP_089108.1| hypothetical protein MS1916 [Mannheimia succiniciproducens MBEL55E]
 gi|81386653|sp|Q65R87|RLMN_MANSM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|52308023|gb|AAU38523.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 371

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 156/380 (41%), Positives = 217/380 (57%), Gaps = 23/380 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+ + R+++ E   ++G        R  Q+ KWIY  G  +F  M++I++++R 
Sbjct: 1   MTEKINLMNLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLRD 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  PEI  E+ S DGT KW ++          +IETVYIPE  R TLCVSSQV
Sbjct: 57  KLKAVAEIKAPEIAVEQRSADGTIKWAMQVGD------QQIETVYIPEADRATLCVSSQV 110

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+
Sbjct: 111 GCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKVIGEFGV----------TGIRPITNV 160

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  NV  ++ +  D      SKRR+TLSTSG VP +  +   I V LAIS
Sbjct: 161 VMMGMGEPLLNVANVVPAMELMLDDFAYGLSKRRVTLSTSGVVPALDNLSGMIDVALAIS 220

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDAL 300
           LHA +++LR+ +VPIN+KY ++MLID+   Y  +SNA   ++T EYVML  +NDS   A 
Sbjct: 221 LHAPNDELRDEIVPINKKYNIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDSIEHAH 280

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L ++LK  P KINLIP+NP+P   Y  S    +  F + +   G++  +R  RG DI A
Sbjct: 281 QLAEVLKNTPCKINLIPWNPFPQAPYGKSSNTRVDKFQKTLMEYGFTVIVRKTRGDDIDA 340

Query: 361 ACGQLKSLS-KRIPKVPRQE 379
           ACGQL      R  +   + 
Sbjct: 341 ACGQLAGDVIDRTKRTAAKR 360


>gi|167562546|ref|ZP_02355462.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis
           EO147]
          Length = 378

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 147/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +  E L      +G        R  Q+ +WI+     DF GM+D+++ +R  L  
Sbjct: 7   VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P+I+ + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63  RAVIGTPDILSDHVSADGTRKWLI-----NVGSGNAVETVFIPEETRGTLCVSSQAGCAV 117

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL+  EI+ Q+ +A   L    G E           R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGREPGPNG---RADRVITNVVMMG 174

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + ++G E+ V LA+SLHA 
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDKLGAELPVALAVSLHAP 234

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A  L+ + 
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALT 294

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+P    + S    I  F++ +  +G  + IR  RG DI AACGQL 
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKPDQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354

Query: 367 SLSKRIPKVPRQ 378
              K   ++  +
Sbjct: 355 GAVKDRTRLAER 366


>gi|120610108|ref|YP_969786.1| radical SAM protein [Acidovorax citrulli AAC00-1]
 gi|205829658|sp|A1TM24|RLMN_ACIAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120588572|gb|ABM32012.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax citrulli AAC00-1]
          Length = 373

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 150/383 (39%), Positives = 215/383 (56%), Gaps = 25/383 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+    + L     ++G      R R  Q+++WI+ RG  DF  MSD+++ +R  L+ 
Sbjct: 3   KNLLDFDLDGLAAFCEQLG----EKRFRAVQLFRWIHQRGASDFARMSDLAKSLREKLSG 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +    ++ E +S DGT KWL       +G    +E+V+IPE  RGTLC+SSQ GC++
Sbjct: 59  CAHVAALPVISEHVSADGTVKWLF-----DVGDGNAVESVFIPEDDRGTLCISSQAGCAV 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNLT+ EI+ Q+  A   L    G ++          R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQE----------RVISNVVMMG 163

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  +  +L    D  G   S+RR+T+STSG VP + R+ ++  V +A+SLHA 
Sbjct: 164 MGEPLQNYTALVPALRTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDCAVAMAVSLHAP 223

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+NRKYPL  L+DAC  Y   +    ITFEY ML G+ND P  A  LI ++
Sbjct: 224 NDALRDQLVPLNRKYPLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPEHARQLIDLV 283

Query: 307 K-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +     G+  K NLIPFNP+P      S+ + +  F++ +  +G  + +R  RG DI AA
Sbjct: 284 RPRGGEGVRCKFNLIPFNPFPASGLHRSNPQQVAAFAKMLSDAGIVTTVRKTRGDDIDAA 343

Query: 362 CGQLKSLSK-RIPKVPRQEMQIT 383
           CGQL    K R     R   Q T
Sbjct: 344 CGQLAGDVKDRTRAAERMARQRT 366


>gi|254480238|ref|ZP_05093486.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
           HTCC2148]
 gi|214039800|gb|EEB80459.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
           HTCC2148]
          Length = 391

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 154/376 (40%), Positives = 218/376 (57%), Gaps = 22/376 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+G+    +E+  L++G      + R  Q+ KWI+  G+ D   MS++ + +R  L
Sbjct: 17  EKVNLLGLPLAAMEQYFLELG----EKKFRAQQVLKWIHHHGVTDIDEMSNLGKVLREKL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PEIV +  S DGTRKW +R     +     +E V IP+  R TLCVSSQVGC
Sbjct: 73  KSVAEIKPPEIVSQHDSNDGTRKWAIRVEGGGL-----VEAVLIPDGKRATLCVSSQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q   R+L+A EI+ QV LA      F   +          GR ++N+VM
Sbjct: 128 SLDCSFCSTGKQGFQRDLSAAEIIGQVWLAIKSYDAFQSAK----------GRIVTNVVM 177

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++ +  +      SKRR+TLSTSG VP + ++ +   V LA+SLH
Sbjct: 178 MGMGEPLLNFDNVVAAMDLMMEDNAYGISKRRVTLSTSGVVPALDKLAKVSEVSLAVSLH 237

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRI-TFEYVMLKGINDSPRDALNL 302
           A ++ LR+ LVPINRKYP+ +L+++ R+Y    S+ +R+ T EY ++ G+ND    A  L
Sbjct: 238 APNDALRSELVPINRKYPIAVLLESARNYIDAQSDKKRVVTIEYTLIAGVNDQREHAQEL 297

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LKG P KINLIPFN +   +Y       +  F + +  +GY   +RT RG DI AAC
Sbjct: 298 AQLLKGYPCKINLIPFNTFDQSDYRRPSGNAVSRFWQVLVDAGYIVTVRTTRGDDIDAAC 357

Query: 363 GQL-KSLSKRIPKVPR 377
           GQL   +  R  +  R
Sbjct: 358 GQLVGQVVDRTRRSER 373


>gi|264679426|ref|YP_003279333.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
 gi|262209939|gb|ACY34037.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
          Length = 369

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 153/380 (40%), Positives = 208/380 (54%), Gaps = 25/380 (6%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           +    E L     ++G      R R +Q+++WI+ RG  DF  M+D+++ +R  L     
Sbjct: 2   LDFDLEGLTAYCEQLG----EKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAH 57

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           I    +V E +S DGT KWL       +G    +E+V+IPE  RGTLCVSSQ GC++ C 
Sbjct: 58  ITALPVVTEHVSADGTVKWLF-----DVGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCR 112

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG Q   RNL   EIL Q+  A   L    G ED          R ISN+VMMGMGE
Sbjct: 113 FCSTGHQGFSRNLNTGEILAQLWYAEHSLRKRFGTED----------RIISNVVMMGMGE 162

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249
           PL N+  +  +L +  D  G   S+RR+T+STSG VP + R+ ++  V LA+SLHA ++ 
Sbjct: 163 PLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDP 222

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           LR+ LVP+N+KYP+  L+DAC  Y   +    ITFEY ML G+ND P  A  LI++++  
Sbjct: 223 LRDNLVPLNKKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRAR 282

Query: 310 P-----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
                  K NLIPFNP+P    L S    +  F+  +  +G  + +R  RG DI AACGQ
Sbjct: 283 GDGKSWCKFNLIPFNPFPASGLLRSPSARVTEFATLLSNAGIVTTVRKTRGDDIDAACGQ 342

Query: 365 LKSLSK-RIPKVPRQEMQIT 383
           L    K R     R   Q T
Sbjct: 343 LAGDVKDRTRAAERMAKQRT 362


>gi|119944920|ref|YP_942600.1| hypothetical protein Ping_1165 [Psychromonas ingrahamii 37]
 gi|205829827|sp|A1SU36|RLMN_PSYIN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|119863524|gb|ABM03001.1| radical SAM enzyme, Cfr family protein [Psychromonas ingrahamii 37]
          Length = 372

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 155/384 (40%), Positives = 219/384 (57%), Gaps = 24/384 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN +KK +L+ + RE L    +++G        R  Q+ KWIY  G  DF  MS++++++
Sbjct: 1   MN-IKKVNLLDLNREGLRAFFVELG----EKPFRAEQVMKWIYHYGCEDFDLMSNVNKKL 55

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I+ PEI  E+ S DGT KW +           E+ETVYIPEK R TLC+SS
Sbjct: 56  RQKLKECAEIVAPEIKVEQRSNDGTIKWAMTVGD------QEVETVYIPEKDRATLCISS 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC L C+FC T  Q   RNL+  EI+ QV  A  ++G          +   S  R I+
Sbjct: 110 QVGCVLACNFCSTAQQGFNRNLSVSEIIGQVWRAAKIVG----------VTGESGKRPIT 159

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N +N+  ++ +  D  G + SKRR+T+STSG VP +  +G+ I V LA
Sbjct: 160 NVVMMGMGEPLLNLNNLIPAMELMLDDFGYALSKRRVTVSTSGVVPALDILGDRIDVSLA 219

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRD 298
           ISLHA ++ LR+ ++PIN KY +   +   + Y   S A R  +  EY++L   NDS   
Sbjct: 220 ISLHAANDTLRSQMMPINDKYNIADFLAGVKRYIAKSKANRGKVYIEYLLLDHFNDSTDQ 279

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L  +LK  P KINLIPFNP+PG +Y       +  F++ +   GY+  +R  RG DI
Sbjct: 280 AHELAILLKDTPCKINLIPFNPFPGNDYQKPSNSRVDRFNKVLMEYGYTVTVRKTRGDDI 339

Query: 359 LAACGQL-KSLSKRIPKVPRQEMQ 381
            AACGQL   +  R  +  ++ +Q
Sbjct: 340 DAACGQLVGDVIDRTKRTMKKRLQ 363


>gi|161524634|ref|YP_001579646.1| radical SAM protein [Burkholderia multivorans ATCC 17616]
 gi|189350610|ref|YP_001946238.1| Cfr family radical SAM enzyme [Burkholderia multivorans ATCC 17616]
 gi|160342063|gb|ABX15149.1| radical SAM enzyme, Cfr family [Burkholderia multivorans ATCC
           17616]
 gi|189334632|dbj|BAG43702.1| Cfr family radical SAM enzyme [Burkholderia multivorans ATCC 17616]
          Length = 378

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 147/378 (38%), Positives = 216/378 (57%), Gaps = 12/378 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+    E L      +G        R  Q+ +WI+     +F GM+D+++ +
Sbjct: 1   MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGNFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    SI  P+IV + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRASITMPDIVSDHVSADGTRKWLV-----DVGNGNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   L    G             R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N++ V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A 
Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDA 348

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366


>gi|172060774|ref|YP_001808426.1| radical SAM protein [Burkholderia ambifaria MC40-6]
 gi|205829677|sp|B1YR46|RLMN_BURA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|171993291|gb|ACB64210.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MC40-6]
          Length = 379

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/383 (38%), Positives = 216/383 (56%), Gaps = 12/383 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+    E L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    SI+ PEI  + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRASIVMPEIASDHVSADGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   L    G             R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N++ V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A 
Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348

Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
           ACGQL    K   ++  +     
Sbjct: 349 ACGQLAGAVKDRTRLAERTGAAA 371


>gi|167569729|ref|ZP_02362603.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis
           C6786]
          Length = 378

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +  E L      +G        R  Q+ +WI+     DF GM+D+++ +R  L  
Sbjct: 7   VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P+I+ + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63  RAVIGTPDILSDHVSADGTRKWLI-----NVGSGNAVETVFIPEETRGTLCVSSQAGCAV 117

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL+  EI+ Q+ +A   L    G E           R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGREPGPNG---RADRVITNVVMMG 174

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + ++G E+ V LA+SLHA 
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDKLGAELPVALAVSLHAP 234

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+NRK+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A  L+ + 
Sbjct: 235 NDALRDELVPLNRKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALT 294

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+P    + S    I  F++ +  +G  + IR  RG DI AACGQL 
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKPDQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354

Query: 367 SLSKRIPKVPRQ 378
              K   ++  +
Sbjct: 355 GAVKDRTRLAER 366


>gi|260221248|emb|CBA29622.1| Ribosomal RNA large subunit methyltransferase N [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 466

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 153/371 (41%), Positives = 209/371 (56%), Gaps = 21/371 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+    E L      +G      + R +Q+++W++ +G   F  MSD+++ +R  L  
Sbjct: 3   VNLLDFDLEGLAAFCESLG----EKKFRATQLFRWVHQKGASQFDDMSDLAKSLRDKLRG 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           H  +    ++ + IS DGT KWL       +G    +ETV+IPE  RGTLC+SSQ GC++
Sbjct: 59  HAEVRALPVITQHISADGTIKWLF-----DVGNGDAVETVFIPESDRGTLCISSQAGCAV 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL   EIL Q+  A   L    G  D          R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLKTWEILAQLWFAEHFLRSHLGVSD----------RVISNVVMMG 163

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  +  +L +  D  G   S+RR+T+STSG VP + R+GE+  V LA+SLHA 
Sbjct: 164 MGEPLQNYVALVPALKVMLDDHGYGLSRRRVTVSTSGVVPMMDRLGEDCPVALAVSLHAP 223

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            + LR+ LVP+NRKYPL+ L++ACR Y   +    ITFEY ML G+ND P  A  L++++
Sbjct: 224 EDSLRDNLVPLNRKYPLKELMEACRRYLAHAPRDFITFEYCMLDGVNDHPEHAKLLLQLV 283

Query: 307 K--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           K  G+P K NLIPFNP+P    L S    +  F+  +   G  + IR  RG DI AACGQ
Sbjct: 284 KESGVPCKFNLIPFNPFPASGLLRSSNNAVQAFARILVDGGLVTTIRKTRGDDIDAACGQ 343

Query: 365 LKSLSKRIPKV 375
           L    K    V
Sbjct: 344 LAGDVKDRTNV 354


>gi|162147642|ref|YP_001602103.1| hypothetical protein GDI_1858 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209542271|ref|YP_002274500.1| radical SAM enzyme, Cfr family [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786219|emb|CAP55801.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209529948|gb|ACI49885.1| radical SAM enzyme, Cfr family [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 404

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 185/371 (49%), Positives = 256/371 (69%), Gaps = 18/371 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ REEL +AL++IG        RT Q+W WIY +G+ DF  MS I++ ++  L 
Sbjct: 46  RRELVGLSREELTQALVEIG----EKPFRTKQLWHWIYHQGVTDFARMSSIAKPLQAKLA 101

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123
           + F +  P+    + S D TRK+L RF         E ETVYIP++   RG +C+SSQVG
Sbjct: 102 ERFVVGRPDAAMVQTSTDETRKFLFRFRD-----GQEAETVYIPDRREDRGAVCISSQVG 156

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C+FC+TGTQKLVRNL A EI+ Q + AR   G++P  +           R +S IV
Sbjct: 157 CTLSCTFCHTGTQKLVRNLGAAEIVGQFMAARDSYGEWPSPKG-------DTPRLLSTIV 209

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N++N+ K++ I  D  G+  S+RRITLSTSG +P + + G E+G+ LAISL
Sbjct: 210 LMGMGEPLYNYENIAKAMKIIMDGEGIGLSRRRITLSTSGVIPMMDQCGSELGINLAISL 269

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV NDLR+ +VP+NRKYP+E LI ACR YP  SNARRITFEY+ML+G+NDS  +A  L+
Sbjct: 270 HAVRNDLRDEIVPLNRKYPIEDLIAACRRYPTASNARRITFEYIMLRGVNDSEAEARELV 329

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++ GIPAK+NLIPFNPWPG  Y  S ++ +  F++ +  +G++SPIR PRG DILAACG
Sbjct: 330 RLIAGIPAKVNLIPFNPWPGSAYKPSTREQLAKFAQIVMDAGFASPIRMPRGRDILAACG 389

Query: 364 QLKSLSKRIPK 374
           QL++ S+R  +
Sbjct: 390 QLRTESERERR 400


>gi|115351803|ref|YP_773642.1| radical SAM protein [Burkholderia ambifaria AMMD]
 gi|122323090|sp|Q0BEW5|RLMN_BURCM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|115281791|gb|ABI87308.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia ambifaria AMMD]
          Length = 379

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/383 (38%), Positives = 216/383 (56%), Gaps = 12/383 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+    E L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    SI+ PEI  + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRASIVMPEIASDHVSTDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   L    G             R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N++ V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A 
Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348

Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
           ACGQL    K   ++  +     
Sbjct: 349 ACGQLAGAVKDRTRLAERTGAAA 371


>gi|167836392|ref|ZP_02463275.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
           MSMB43]
          Length = 378

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 146/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +  E L      +G        R  Q+ +WI+     DF GM+D+++ +R  L  
Sbjct: 7   VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P+I+ + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63  RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL+  EI+ Q+ +A   L    G             R ++N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVVTNVVMMG 174

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA+SLHA 
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+NRK+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A  L+ + 
Sbjct: 235 NDALRDELVPLNRKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTQAHARELLALT 294

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+P    + S  + I  F++ +  +G  + IR  RG DI AACGQL 
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGIVTTIRKTRGDDIDAACGQLA 354

Query: 367 SLSKRIPKVPRQ 378
              +   ++  +
Sbjct: 355 GAVRDRTRLAER 366


>gi|121593579|ref|YP_985475.1| radical SAM protein [Acidovorax sp. JS42]
 gi|205829704|sp|A1W574|RLMN_ACISJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120605659|gb|ABM41399.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax sp. JS42]
          Length = 374

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 150/382 (39%), Positives = 211/382 (55%), Gaps = 25/382 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+    + L     ++G      R R +Q+++WI+ RG  DF  MSD+++ +R  L  
Sbjct: 3   TNLLDFDLDGLAAFCERLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLRG 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +   + + E +S DGT KWL       +G    +ETV+IPE  RGTLC+SSQ GC++
Sbjct: 59  CAHVAGLQAISEHVSADGTVKWLF-----DVGDGNAVETVFIPEDDRGTLCISSQAGCAV 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNLT  EIL Q+  A   L    G             R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLTTGEILAQLWYAEHALRQRRG----------DGERVISNVVMMG 163

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  +  +L +  D  G   S+RR+T+STSG VP + R+ ++  V LA+SLHA 
Sbjct: 164 MGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAP 223

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+NRKYPL  L+ ACR Y   +    ITFEY ML+G+ND P  A  LI ++
Sbjct: 224 NDVLRDNLVPLNRKYPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPEHARQLIDLV 283

Query: 307 ------KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
                  G+  K NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI A
Sbjct: 284 GRKAADGGVSCKFNLIPFNPFPASGLRRSPPAAVTAFAQLLSDAGIVTTVRKTRGDDIDA 343

Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382
           ACGQL    K   +V  +  ++
Sbjct: 344 ACGQLAGDVKDRTRVNERMAKL 365


>gi|169634407|ref|YP_001708143.1| hypothetical protein ABSDF3005 [Acinetobacter baumannii SDF]
 gi|169797246|ref|YP_001715039.1| hypothetical protein ABAYE3266 [Acinetobacter baumannii AYE]
 gi|184156828|ref|YP_001845167.1| Fe-S-cluster redox protein [Acinetobacter baumannii ACICU]
 gi|213155960|ref|YP_002318005.1| radical SAM enzyme, Cfr family [Acinetobacter baumannii AB0057]
 gi|215484687|ref|YP_002326922.1| UPF0063 protein yfgB [Acinetobacter baumannii AB307-0294]
 gi|239500768|ref|ZP_04660078.1| UPF0063 protein yfgB [Acinetobacter baumannii AB900]
 gi|260556128|ref|ZP_05828347.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           baumannii ATCC 19606]
 gi|301346479|ref|ZP_07227220.1| UPF0063 protein yfgB [Acinetobacter baumannii AB056]
 gi|301510159|ref|ZP_07235396.1| UPF0063 protein yfgB [Acinetobacter baumannii AB058]
 gi|301594216|ref|ZP_07239224.1| UPF0063 protein yfgB [Acinetobacter baumannii AB059]
 gi|332851249|ref|ZP_08433322.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332866104|ref|ZP_08436832.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
           6013113]
 gi|332873243|ref|ZP_08441200.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
           6014059]
 gi|205829659|sp|B2I3E2|RLMN_ACIBC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829701|sp|B0V4U0|RLMN_ACIBY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829716|sp|A3M208|RLMN_ACIBT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807143|sp|B7H072|RLMN_ACIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807144|sp|B7I5G4|RLMN_ACIB5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807145|sp|B0VKS2|RLMN_ACIBS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|169150173|emb|CAM88067.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|169153199|emb|CAP02291.1| conserved hypothetical protein [Acinetobacter baumannii]
 gi|183208422|gb|ACC55820.1| predicted Fe-S-cluster redox enzyme [Acinetobacter baumannii ACICU]
 gi|193076307|gb|ABO10952.2| putative Fe-S-cluster redox enzyme [Acinetobacter baumannii ATCC
           17978]
 gi|213055120|gb|ACJ40022.1| radical SAM enzyme, Cfr family [Acinetobacter baumannii AB0057]
 gi|213987723|gb|ACJ58022.1| UPF0063 protein yfgB [Acinetobacter baumannii AB307-0294]
 gi|260410183|gb|EEX03482.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           baumannii ATCC 19606]
 gi|332730129|gb|EGJ61456.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332734850|gb|EGJ65943.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
           6013113]
 gi|332738755|gb|EGJ69625.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
           6014059]
          Length = 410

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 168/388 (43%), Positives = 231/388 (59%), Gaps = 24/388 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM R ELE+    IG      + R  Q+ KWI+   + DF  M++IS ++R  L
Sbjct: 28  EKVNLLGMSRAELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 83

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120
            Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +     R TLC+SS
Sbjct: 84  EQICEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISS 140

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L CSFC TG Q   R+LT +EI+ Q+ +A     +     + E        R ++
Sbjct: 141 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERE--------RSVT 192

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 193 NVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 252

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296
           ISLHA +++LRN LVPIN+KYPL  LI AC+ Y       S  + +T EYVML+G+ND P
Sbjct: 253 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQP 312

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L+K+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  RG 
Sbjct: 313 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 372

Query: 357 DILAACGQL-KSLSKRIPKVPRQEMQIT 383
           DI AACGQL   ++ R  +  + + ++ 
Sbjct: 373 DIDAACGQLVGQVADRTRRAEQWQKKVA 400


>gi|294500981|ref|YP_003564681.1| radical SAM enzyme, Cfr family [Bacillus megaterium QM B1551]
 gi|294350918|gb|ADE71247.1| radical SAM enzyme, Cfr family [Bacillus megaterium QM B1551]
          Length = 363

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 205/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K S+  +   +LE  L++ G      + R  QI+ W+YV+ + DF  MS++S+ +R  L
Sbjct: 16  QKPSIYSLEMHDLENWLVEHG----DKKFRAKQIFDWLYVKRVTDFDDMSNLSKGLREQL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              F++   + V ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 72  KDKFALTTLKTVVQQTSGDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +               G ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------QGERVSSVVI 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D + + L   +   GL+   R IT+STSG +P I +  +E + +  AISL
Sbjct: 173 MGIGEPFDNYDEMMRFLKTINSDDGLNIGARHITVSTSGIIPKIYKFADEKMQINFAISL 232

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +ND+R+ L+PINR Y L  L++A ++Y   +   RI+FEY +  G+ND    A  L 
Sbjct: 233 HAPNNDIRSRLMPINRAYKLPDLMEAIKYYTDKTGR-RISFEYGLFGGVNDQVEHAEELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   +NLIP N  P  +Y+ + ++ I  F   +K+ G +  IR  +G DI AACG
Sbjct: 292 DLIKDVKCHVNLIPVNYVPERDYVRTPREQIFAFERTLKKRGVNVTIRREQGHDIDAACG 351

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 352 QLRAKERK 359


>gi|326316277|ref|YP_004233949.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373113|gb|ADX45382.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 373

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 150/383 (39%), Positives = 214/383 (55%), Gaps = 25/383 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+    + L     ++G      R R  Q+++WI+ RG  DF  MSD+++ +R  L+ 
Sbjct: 3   KNLLDFDLDGLAAFCEQLG----EKRFRAVQLFRWIHQRGASDFARMSDLAKSLREKLSG 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +    ++ E +S DGT KWL       +G    +E+V+IPE  RGTLC+SSQ GC++
Sbjct: 59  CAHVAALPVISEHVSADGTVKWLF-----DVGDGNAVESVFIPEDDRGTLCISSQAGCAV 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNLT+ EI+ Q+  A   L    G ++          R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQE----------RVISNVVMMG 163

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  +  +L    D  G   S+RR+T+STSG VP + R+ ++  V +A+SLHA 
Sbjct: 164 MGEPLQNYTALVPALRTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDCAVAMAVSLHAP 223

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+NRKYPL  L+DAC  Y   +    ITFEY ML G+ND P  A  LI ++
Sbjct: 224 NDALRDQLVPLNRKYPLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPEHARQLIDLV 283

Query: 307 K-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +     G+  K NLIPFNP+P      S+   +  F++ +  +G  + +R  RG DI AA
Sbjct: 284 RPRGAEGVRCKFNLIPFNPFPASGLHRSNPGQVAAFAKLLSDAGIVTTVRKTRGDDIDAA 343

Query: 362 CGQLKSLSK-RIPKVPRQEMQIT 383
           CGQL    K R     R   Q T
Sbjct: 344 CGQLAGDVKDRTRAAERMARQRT 366


>gi|170703874|ref|ZP_02894562.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria IOP40-10]
 gi|171321348|ref|ZP_02910305.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MEX-5]
 gi|170131219|gb|EDS99858.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria IOP40-10]
 gi|171093366|gb|EDT38556.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MEX-5]
          Length = 379

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/383 (38%), Positives = 215/383 (56%), Gaps = 12/383 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+    E L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    SI+ PEI  + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRASIVMPEIASDHVSTDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   L    G             R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A 
Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348

Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
           ACGQL    K   ++  +     
Sbjct: 349 ACGQLAGAVKDRTRLAERTGAAA 371


>gi|254358299|ref|ZP_04974572.1| radical SAM enzyme, Cfr family [Burkholderia mallei 2002721280]
 gi|148027426|gb|EDK85447.1| radical SAM enzyme, Cfr family [Burkholderia mallei 2002721280]
          Length = 378

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 147/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +  E L      +G        R  Q+ +WI+     DF GM+D+++ +R  L  
Sbjct: 7   VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNADDFDGMTDLAKSLREKLKG 62

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P+I+ + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63  RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL+  EI+ Q+ +A   L    G             R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA+SLHA 
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A  L+ + 
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVT 294

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+P    + S  + I  F++ +  +G  + IR  RG DI AACGQL 
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354

Query: 367 SLSKRIPKVPRQ 378
              K   ++  +
Sbjct: 355 GAVKDRTRLAER 366


>gi|295706329|ref|YP_003599404.1| radical SAM enzyme, Cfr family [Bacillus megaterium DSM 319]
 gi|294803988|gb|ADF41054.1| radical SAM enzyme, Cfr family [Bacillus megaterium DSM 319]
          Length = 363

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 205/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K S+  +   +LE  L++ G      + R  QI+ W+YV+ + DF  MS++S+ +R  L
Sbjct: 16  QKPSIYSLEMHDLENWLVEHG----DKKFRAKQIFDWLYVKRVTDFDDMSNLSKGLREQL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              F++   + V ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 72  KDKFALTTLKTVVQQTSGDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +               G ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------QGERVSSVVI 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D + + L   +   GL+   R IT+STSG +P I +  +E + +  AISL
Sbjct: 173 MGIGEPFDNYDEMMRFLKTINSDDGLNIGARHITVSTSGIIPKIYKFADEKMQINFAISL 232

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +ND+R+ L+PINR Y L  L++A ++Y   +   RI+FEY +  G+ND    A  L 
Sbjct: 233 HAPNNDIRSRLMPINRAYKLPDLMEAIKYYTDKTGR-RISFEYGLFGGVNDQVEHAEELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   +NLIP N  P  +Y+ + ++ I  F   +K+ G +  IR  +G DI AACG
Sbjct: 292 DLIKDVKCHVNLIPVNYVPERDYVRTPREQIFAFERTLKKRGVNVTIRREQGHDIDAACG 351

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 352 QLRAKERK 359


>gi|262371647|ref|ZP_06064926.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           junii SH205]
 gi|262311672|gb|EEY92757.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
           junii SH205]
          Length = 411

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 170/396 (42%), Positives = 229/396 (57%), Gaps = 32/396 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+GM R ELE    ++G      + R  Q+ KWI+   + DF  M++IS ++R  L
Sbjct: 29  KKVNLLGMSRTELEAFFEELG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLREKL 84

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120
            +   I  PE+V    S DGTRKW+ R      G    +ETV IP +     R TLC+SS
Sbjct: 85  EKICEIKAPEVVHRNYSKDGTRKWVFRVGD---GEGSLVETVLIPAEDKTGARKTLCISS 141

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L CSFC TG Q   R+LT  EI+ Q+ +A     +     + E        R ++
Sbjct: 142 QVGCALDCSFCSTGKQGFQRDLTPAEIIGQLWMANYSYMEDVPVAERE--------RTVT 193

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  S+ +  D      SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALA 253

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296
           ISLHA +++LRN LVPIN+KYPL  LI AC+ Y       S  R +T EYVML+G+ND P
Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYLAKDGNESARRHVTIEYVMLEGVNDQP 313

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L+K+LK +P+KINLIPFNP+P   Y  S +  I+ F + +  +G+   IR  RG 
Sbjct: 314 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGD 373

Query: 357 DILAACGQL---------KSLSKRIPKVPRQEMQIT 383
           DI AACGQL         ++   +     RQE+  T
Sbjct: 374 DIDAACGQLVGQVADRTRRAEQWKKKVAQRQEILRT 409


>gi|167719265|ref|ZP_02402501.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           DM98]
          Length = 378

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 147/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +  E L      +G        R  Q+ +WI+     DF GM+D+++ +R  L  
Sbjct: 7   VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P+I+ + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63  RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL+  EI+ Q+ +A   L    G             R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA+SLHA 
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A  L+ + 
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVT 294

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+P    + S  + I  F++ +  +G  + IR  RG DI AACGQL 
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQILIDAGVVTTIRKTRGDDIDAACGQLA 354

Query: 367 SLSKRIPKVPRQ 378
              K   ++  +
Sbjct: 355 GAVKDRTRLAER 366


>gi|167581703|ref|ZP_02374577.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
           TXDOH]
          Length = 378

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +  E L      +G        R  Q+ +WI+     DF GM+D+++ +R  L  
Sbjct: 7   VNLLDLDAEGLVAYCGGLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P+I+ + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63  RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL+  EI+ Q+ +A   L    G             R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA+SLHA 
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A  L+ + 
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALT 294

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+P    L S  + I  F++ +  +G  + IR  RG DI AACGQL 
Sbjct: 295 RDVPCKFNLIPFNPFPESGLLRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354

Query: 367 SLSKRIPKVPRQ 378
              K   ++  +
Sbjct: 355 GAVKDRTRLAER 366


>gi|322506720|gb|ADX02174.1| Fe-S-cluster redox protein [Acinetobacter baumannii 1656-2]
 gi|323516594|gb|ADX90975.1| Fe-S-cluster redox protein [Acinetobacter baumannii TCDC-AB0715]
          Length = 406

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 168/388 (43%), Positives = 231/388 (59%), Gaps = 24/388 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM R ELE+    IG      + R  Q+ KWI+   + DF  M++IS ++R  L
Sbjct: 24  EKVNLLGMSRAELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 79

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120
            Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +     R TLC+SS
Sbjct: 80  EQICEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISS 136

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L CSFC TG Q   R+LT +EI+ Q+ +A     +     + E        R ++
Sbjct: 137 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERE--------RSVT 188

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 189 NVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 248

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296
           ISLHA +++LRN LVPIN+KYPL  LI AC+ Y       S  + +T EYVML+G+ND P
Sbjct: 249 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQP 308

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L+K+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  RG 
Sbjct: 309 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 368

Query: 357 DILAACGQL-KSLSKRIPKVPRQEMQIT 383
           DI AACGQL   ++ R  +  + + ++ 
Sbjct: 369 DIDAACGQLVGQVADRTRRAEQWQKKVA 396


>gi|121604771|ref|YP_982100.1| radical SAM protein [Polaromonas naphthalenivorans CJ2]
 gi|205829800|sp|A1VNF1|RLMN_POLNA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120593740|gb|ABM37179.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas
           naphthalenivorans CJ2]
          Length = 382

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 151/384 (39%), Positives = 212/384 (55%), Gaps = 25/384 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+    E L     ++G      R R +Q+++WI+ +G  DF+ M+D+++ +R  L  
Sbjct: 3   TNLLDFDLEGLAAFCEQLG----QKRFRATQLFRWIHQKGASDFEQMTDLAKSLREKLAV 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I    +V    S DGT KWL       +G    IETV+IPE  RGTLC+SSQ GC++
Sbjct: 59  SAHIQGLNVVSRHESADGTIKWLF-----DVGAGDVIETVFIPETDRGTLCISSQAGCAV 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNLT  EI+ Q+  A   L    G  +          R ISN+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLTTGEIISQLWFAEHFLRKHLGRNE----------RVISNVVMMG 163

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  +  +L +  +  G   S+RR+T+STSG VP I R+ ++  V LA+SLHA 
Sbjct: 164 MGEPLQNYSQLLPALKVMLNDHGYGLSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAP 223

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            + LR+ LVP+N+KYP+  L++AC  Y   +    ITFEY ML G+ND P  A  L+ ++
Sbjct: 224 QDALRSNLVPLNKKYPIAELLEACTRYQSAAPRDFITFEYCMLDGVNDQPEHARQLVALM 283

Query: 307 K-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           K     G+  K NLIPFNP+P    L SD   ++ F++ +  +G  + +R  RG DI AA
Sbjct: 284 KTHAANGLSCKFNLIPFNPFPASGLLRSDMPQVMAFAKILMDAGIITTVRKTRGDDIDAA 343

Query: 362 CGQLKSLSK-RIPKVPRQEMQITG 384
           CGQL    + R     R   Q  G
Sbjct: 344 CGQLAGDVQDRTSVDQRMAAQRQG 367


>gi|167823864|ref|ZP_02455335.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           9]
 gi|226197115|ref|ZP_03792692.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pakistan
           9]
 gi|237812551|ref|YP_002897002.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei MSHR346]
 gi|225930494|gb|EEH26504.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pakistan
           9]
 gi|237502725|gb|ACQ95043.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei MSHR346]
          Length = 378

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/372 (39%), Positives = 215/372 (57%), Gaps = 12/372 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +  E L      +G        R  Q+ +WI+     DF GM+D+++ +R  L  
Sbjct: 7   VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P+I+ + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63  RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL+  EI+ Q+ +A   L    G           V R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KVERVITNVVMMG 174

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA+SLHA 
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A  L+ + 
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVT 294

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+P    + S  + I  F++ +  +G  + IR  RG DI AACGQL 
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354

Query: 367 SLSKRIPKVPRQ 378
              K   ++  +
Sbjct: 355 GAVKDRTRLAER 366


>gi|299530509|ref|ZP_07043929.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
 gi|298721485|gb|EFI62422.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
          Length = 369

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 152/380 (40%), Positives = 207/380 (54%), Gaps = 25/380 (6%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           +    E L     ++G      R R +Q+++WI+ RG  DF  M+D+++ +R  L     
Sbjct: 2   LDFDLEGLTAYCEQLG----EKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAH 57

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           I    +V E +S DGT KWL       +G    +E+V+IPE  RGTLCVSSQ GC++ C 
Sbjct: 58  ITALPVVTEHVSADGTVKWLF-----DVGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCR 112

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG Q   RNL   EIL Q+  A   L    G ED          R ISN+VMMGMGE
Sbjct: 113 FCSTGHQGFSRNLNTGEILAQLWYAEHSLRKRFGTED----------RIISNVVMMGMGE 162

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249
           PL N+  +  +L +  D  G   S+RR+T+STSG VP + R+ ++  V LA+SLHA ++ 
Sbjct: 163 PLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDP 222

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           LR+ LVP+N+KYP+  L+DAC  Y   +    ITFEY ML G+ND    A  LI++++  
Sbjct: 223 LRDNLVPLNKKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQLEHARQLIELVRAR 282

Query: 310 P-----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
                  K NLIPFNP+P    L S    +  F+  +  +G  + +R  RG DI AACGQ
Sbjct: 283 GDGKSWCKFNLIPFNPFPASGLLRSPSARVTEFATLLSNAGIVTTVRKTRGDDIDAACGQ 342

Query: 365 LKSLSK-RIPKVPRQEMQIT 383
           L    K R     R   Q T
Sbjct: 343 LAGDVKDRTRAAERMAKQRT 362


>gi|260549076|ref|ZP_05823297.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp.
           RUH2624]
 gi|260407804|gb|EEX01276.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp.
           RUH2624]
          Length = 410

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 167/388 (43%), Positives = 231/388 (59%), Gaps = 24/388 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+GM R +LE+    IG      + R  Q+ KWI+   + DF  M++IS ++R  L
Sbjct: 28  EKVNLLGMSRAQLEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 83

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120
            Q   I  PE+V    S DGTRKW+ R      G    +ETV IP +     R TLC+SS
Sbjct: 84  EQICEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISS 140

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L CSFC TG Q   R+LT +EI+ Q+ +A     +     + E        R ++
Sbjct: 141 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERE--------RSVT 192

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 193 NVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALA 252

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296
           ISLHA +++LRN LVPIN+KYPL  LI AC+ Y       S  + +T EYVML+G+ND P
Sbjct: 253 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQP 312

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L+K+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  RG 
Sbjct: 313 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 372

Query: 357 DILAACGQL-KSLSKRIPKVPRQEMQIT 383
           DI AACGQL   ++ R  +  + + ++ 
Sbjct: 373 DIDAACGQLVGQVADRTRRAEQWQKKVA 400


>gi|83720408|ref|YP_442753.1| radical SAM protein [Burkholderia thailandensis E264]
 gi|167619819|ref|ZP_02388450.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
           Bt4]
 gi|123753780|sp|Q2SWE6|RLMN_BURTA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|83654233|gb|ABC38296.1| radical SAM enzyme, Cfr family [Burkholderia thailandensis E264]
          Length = 378

 Score =  444 bits (1143), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +  E L      +G        R  Q+ +WI+     DF GM+D+++ +R  L  
Sbjct: 7   VNLLDLDAEGLVAYCGGLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P+I+ + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63  RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL+  EI+ Q+ +A   L    G             R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA+SLHA 
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A  L+ + 
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALT 294

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+P    L S  + I  F++ +  +G  + IR  RG DI AACGQL 
Sbjct: 295 RDVPCKFNLIPFNPFPESGLLRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354

Query: 367 SLSKRIPKVPRQ 378
              K   ++  +
Sbjct: 355 GAVKDRTRLAER 366


>gi|226328008|ref|ZP_03803526.1| hypothetical protein PROPEN_01899 [Proteus penneri ATCC 35198]
 gi|225203712|gb|EEG86066.1| hypothetical protein PROPEN_01899 [Proteus penneri ATCC 35198]
          Length = 357

 Score =  444 bits (1143), Expect = e-123,   Method: Composition-based stats.
 Identities = 157/368 (42%), Positives = 212/368 (57%), Gaps = 26/368 (7%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           + E  + +G        R  QI KW+Y     DF  M+DI++ +R+ L +   I  PE+ 
Sbjct: 1   MRELFVSMG----EKPFRADQIMKWMYHYCYDDFDQMTDINKVLRNKLKEIAEIKAPEVS 56

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
           +E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+L C FC T  Q
Sbjct: 57  EEQRSTDGTIKWAIKVGD------QQVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 110

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
              RNL   EI+ QV  A  ++G           +  +  R I+N+VMMGMGEPL N +N
Sbjct: 111 GFNRNLKVSEIIGQVWRAAKIIG----------SLKETGRRPITNVVMMGMGEPLLNLNN 160

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256
           V  +L I  D  G   SKRR+T+STSG VP + ++ + + V LAISLHA ++D+R+ +VP
Sbjct: 161 VIPALEIMMDDFGFGLSKRRVTVSTSGVVPALDKLADAVDVALAISLHAPTDDIRDEIVP 220

Query: 257 INRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
           IN+KY + M ++  R Y   SNA   R+T EYVML  INDS   A  L + LK  P KIN
Sbjct: 221 INKKYNIAMFLEGVRRYIAKSNANQGRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKIN 280

Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS----LSK 370
           LIP+NP+PG  Y  S    I  FS+ +   G+++ +R  RG DI AACGQL       +K
Sbjct: 281 LIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVIDRTK 340

Query: 371 RIPKVPRQ 378
           R  K  +Q
Sbjct: 341 RTLKKRQQ 348


>gi|53719145|ref|YP_108131.1| hypothetical protein BPSL1511 [Burkholderia pseudomallei K96243]
 gi|53723553|ref|YP_103007.1| radical SAM protein [Burkholderia mallei ATCC 23344]
 gi|67639886|ref|ZP_00438715.1| radical SAM enzyme, Cfr family [Burkholderia mallei GB8 horse 4]
 gi|76811596|ref|YP_333752.1| radical SAM protein [Burkholderia pseudomallei 1710b]
 gi|121600638|ref|YP_993156.1| radical SAM protein [Burkholderia mallei SAVP1]
 gi|124383540|ref|YP_001026069.1| radical SAM protein [Burkholderia mallei NCTC 10229]
 gi|126440813|ref|YP_001059227.1| radical SAM protein [Burkholderia pseudomallei 668]
 gi|126450494|ref|YP_001080663.1| radical SAM protein [Burkholderia mallei NCTC 10247]
 gi|126453816|ref|YP_001066494.1| radical SAM protein [Burkholderia pseudomallei 1106a]
 gi|134277659|ref|ZP_01764374.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 305]
 gi|167002245|ref|ZP_02268035.1| radical SAM enzyme, Cfr family [Burkholderia mallei PRL-20]
 gi|167738262|ref|ZP_02411036.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           14]
 gi|167815452|ref|ZP_02447132.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           91]
 gi|167845403|ref|ZP_02470911.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           B7210]
 gi|167902394|ref|ZP_02489599.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167910636|ref|ZP_02497727.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           112]
 gi|217421523|ref|ZP_03453027.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 576]
 gi|242316984|ref|ZP_04816000.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106b]
 gi|254177964|ref|ZP_04884619.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 10399]
 gi|254179549|ref|ZP_04886148.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1655]
 gi|254189060|ref|ZP_04895571.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pasteur
           52237]
 gi|254197853|ref|ZP_04904275.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei S13]
 gi|254199953|ref|ZP_04906319.1| radical SAM enzyme, Cfr family [Burkholderia mallei FMH]
 gi|254206286|ref|ZP_04912638.1| radical SAM enzyme, Cfr family [Burkholderia mallei JHU]
 gi|254259301|ref|ZP_04950355.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710a]
 gi|254297426|ref|ZP_04964879.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 406e]
 gi|81379862|sp|Q63UT5|RLMN_BURPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81604959|sp|Q62JW2|RLMN_BURMA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123744447|sp|Q3JRQ1|RLMN_BURP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829680|sp|A3MK77|RLMN_BURM7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829681|sp|A2S2A0|RLMN_BURM9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829682|sp|A1V4K3|RLMN_BURMS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829683|sp|A3NVX3|RLMN_BURP0 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829684|sp|A3NA56|RLMN_BURP6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|52209559|emb|CAH35512.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52426976|gb|AAU47569.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 23344]
 gi|76581049|gb|ABA50524.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710b]
 gi|121229448|gb|ABM51966.1| radical SAM enzyme, Cfr family [Burkholderia mallei SAVP1]
 gi|124291560|gb|ABN00829.1| radical SAM enzyme, Cfr family [Burkholderia mallei NCTC 10229]
 gi|126220306|gb|ABN83812.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 668]
 gi|126227458|gb|ABN90998.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106a]
 gi|126243364|gb|ABO06457.1| radical SAM enzyme, Cfr family [Burkholderia mallei NCTC 10247]
 gi|134251309|gb|EBA51388.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 305]
 gi|147749549|gb|EDK56623.1| radical SAM enzyme, Cfr family [Burkholderia mallei FMH]
 gi|147753729|gb|EDK60794.1| radical SAM enzyme, Cfr family [Burkholderia mallei JHU]
 gi|157807225|gb|EDO84395.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 406e]
 gi|157936739|gb|EDO92409.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pasteur
           52237]
 gi|160699003|gb|EDP88973.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 10399]
 gi|169654594|gb|EDS87287.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei S13]
 gi|184210089|gb|EDU07132.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1655]
 gi|217395265|gb|EEC35283.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 576]
 gi|238520497|gb|EEP83956.1| radical SAM enzyme, Cfr family [Burkholderia mallei GB8 horse 4]
 gi|242140223|gb|EES26625.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106b]
 gi|243062062|gb|EES44248.1| radical SAM enzyme, Cfr family [Burkholderia mallei PRL-20]
 gi|254217990|gb|EET07374.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710a]
          Length = 378

 Score =  444 bits (1143), Expect = e-123,   Method: Composition-based stats.
 Identities = 147/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +  E L      +G        R  Q+ +WI+     DF GM+D+++ +R  L  
Sbjct: 7   VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P+I+ + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63  RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL+  EI+ Q+ +A   L    G             R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA+SLHA 
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A  L+ + 
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVT 294

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+P    + S  + I  F++ +  +G  + IR  RG DI AACGQL 
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354

Query: 367 SLSKRIPKVPRQ 378
              K   ++  +
Sbjct: 355 GAVKDRTRLAER 366


>gi|302381137|ref|YP_003816960.1| radical SAM protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302191765|gb|ADK99336.1| radical SAM enzyme, Cfr family [Brevundimonas subvibrioides ATCC
           15264]
          Length = 385

 Score =  444 bits (1143), Expect = e-123,   Method: Composition-based stats.
 Identities = 196/380 (51%), Positives = 268/380 (70%), Gaps = 16/380 (4%)

Query: 7   ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
            +L G+ R  L +AL+   I P    +MR SQ+W WI+  G+ DF  M++++++ +  + 
Sbjct: 19  VNLSGLTRAGLRQALIDADICPPEKAKMRASQVWGWIHHFGVTDFDAMTNMAKDAKAKMA 78

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124
             F++  PEIV+ ++S DGTRKWL+R         +EIETVYIP+  R G LCVSSQVGC
Sbjct: 79  AAFTLARPEIVERQVSADGTRKWLIRTAP-----GIEIETVYIPDVGRAGALCVSSQVGC 133

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC+TGTQ LVRNLTA EI+ QV +AR  L ++P          P   R++SNIV 
Sbjct: 134 TLNCTFCHTGTQALVRNLTAAEIVAQVQVARDDLNEWPS---------PKEDRRLSNIVF 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N D+V  ++ I SD+ G++ S+RRIT+STSG VP +  +G     MLAISLH
Sbjct: 185 MGMGEPLYNLDHVSDAIDIISDNEGIALSRRRITVSTSGVVPQLEPLGTRTQAMLAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR++LVP+N+KYPL+ L+D  R YPG+SNARR+TFEYVMLKG+NDSP +A  L+K
Sbjct: 245 ATNDALRDVLVPLNKKYPLQQLMDGIRAYPGISNARRVTFEYVMLKGVNDSPDEARALVK 304

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +++GIPAK+NLIPFNPWPG +Y CSD K I  F+  + ++GY+SPIRTPRG DILAACGQ
Sbjct: 305 LIEGIPAKVNLIPFNPWPGTDYECSDWKTIERFAAILNKAGYASPIRTPRGRDILAACGQ 364

Query: 365 LKSLSKRIPKVPRQEMQITG 384
           LKS S+++     ++ +   
Sbjct: 365 LKSESEKVRASALRKAEQAA 384


>gi|167893945|ref|ZP_02481347.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           7894]
 gi|167918665|ref|ZP_02505756.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
           BCC215]
          Length = 378

 Score =  444 bits (1143), Expect = e-123,   Method: Composition-based stats.
 Identities = 147/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +  E L      +G        R  Q+ +WI+     DF GM+D+++ +R  L  
Sbjct: 7   VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P+I+ + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSSQ GC++
Sbjct: 63  RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL+  EI+ Q+ +A   L    G             R I+N+VMMG
Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA+SLHA 
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMERLGAELPVALAVSLHAP 234

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+N+K+PL  L+ AC+ Y  ++    ITFEY ML G+ND+   A  L+ + 
Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVT 294

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+P    + S  + I  F++ +  +G  + IR  RG DI AACGQL 
Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354

Query: 367 SLSKRIPKVPRQ 378
              K   ++  +
Sbjct: 355 GAVKDRTRLAER 366


>gi|332305581|ref|YP_004433432.1| radical SAM enzyme, Cfr family [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172910|gb|AEE22164.1| radical SAM enzyme, Cfr family [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 380

 Score =  444 bits (1143), Expect = e-123,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 217/379 (57%), Gaps = 22/379 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+   R  L E    IG        R  Q+ KWIY  G+ DF  M+++++ +R  L 
Sbjct: 11  KINLLNFNRAGLREYFSSIG----EKPFRADQVMKWIYQAGVSDFDQMTNLNKALREKLK 66

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PEI  ++ + DGT K+ LR       G  E+ETV+IP+  R TLCVSSQVGC+
Sbjct: 67  MQCEVKAPEIAYQQGATDGTIKFALRLE-----GGQEVETVWIPDADRATLCVSSQVGCA 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T  Q   RNL+  EI+ QV    + +G          +   S  R I+N+VMM
Sbjct: 122 LECTFCSTAQQGFNRNLSVAEIIGQVWRVATTIG----------LSNDSAKRPITNVVMM 171

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  NV  ++ +  D +    SKRR+TLSTSG VP +  +G++I V LAISLHA
Sbjct: 172 GMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHA 231

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
             + LR+ +VPIN+KYP++  +   R Y   SNA   ++T EYVML GINDS   A  L 
Sbjct: 232 PDDTLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L   P+KINLIPFNP+PG  Y  S    I  F++ +   G    +R  RG DI AACG
Sbjct: 292 KVLADTPSKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACG 351

Query: 364 QL-KSLSKRIPKVPRQEMQ 381
           QL   +  R  ++ +++M+
Sbjct: 352 QLVGDVVDRTKRMLKKQMK 370


>gi|190574019|ref|YP_001971864.1| putative SAM methylase protein [Stenotrophomonas maltophilia K279a]
 gi|254524361|ref|ZP_05136416.1| radical SAM enzyme, Cfr family [Stenotrophomonas sp. SKA14]
 gi|205829904|sp|B2FNQ6|RLMN_STRMK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|190011941|emb|CAQ45562.1| putative SAM methylase protein [Stenotrophomonas maltophilia K279a]
 gi|219721952|gb|EED40477.1| radical SAM enzyme, Cfr family [Stenotrophomonas sp. SKA14]
          Length = 401

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 161/382 (42%), Positives = 226/382 (59%), Gaps = 28/382 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L+ + R  LE+  +++       + R  Q+ KWI+ R + DF  M+D+ + +R  L 
Sbjct: 22  KQNLLDLDRAGLEKFFVEV---LGEKKFRAHQVMKWIHHRYVTDFDEMTDLGKVLRAKLQ 78

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            H  ++ P IV +K S DGT KWLL      + G   IETVYIP+K+RGTLCVSSQVGC 
Sbjct: 79  AHAEVLVPNIVFDKPSADGTHKWLLAM---GVDGKNAIETVYIPDKTRGTLCVSSQVGCG 135

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VMM
Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQMRRLTNVVMM 184

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSAESDVSLAVSLHA 244

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LR  LVP+N+KYP+  L+ +C  Y         +TFEY ++KGIND P  A  L +
Sbjct: 245 PNDALRETLVPLNKKYPIAELMASCARYLRANKRRESVTFEYTLMKGINDKPEHARELAR 304

Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
           +++            K+NLIPFNP+PG  Y  S++  I  F + +  S   + +R  RG 
Sbjct: 305 LMRQFDNAVQAKDSGKVNLIPFNPFPGTRYERSEEAHIRAFQKILLDSNVLTMVRRTRGD 364

Query: 357 DILAACGQLKSLSKRIPKVPRQ 378
           DI AACGQLK     + +  RQ
Sbjct: 365 DIDAACGQLKGQV--MDRTRRQ 384


>gi|118594986|ref|ZP_01552333.1| hypothetical protein MB2181_04920 [Methylophilales bacterium
           HTCC2181]
 gi|118440764|gb|EAV47391.1| hypothetical protein MB2181_04920 [Methylophilales bacterium
           HTCC2181]
          Length = 363

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 161/371 (43%), Positives = 219/371 (59%), Gaps = 14/371 (3%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+     EL E L K G    H   R  Q+ KWIY  G  DF  M+D+++  R  L   
Sbjct: 3   NLLDFNLRELTEYLEKFG----HKPYRAKQLLKWIYQSGEHDFSQMTDLAKSFRQSLQTT 58

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             I  P I  + +S DGTRKWLL      +G    IE V+IPE  RGTLC+SSQVGC+L 
Sbjct: 59  SEIATPSIQLDHLSTDGTRKWLL-----DVGAKNGIEAVFIPETDRGTLCISSQVGCALE 113

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC TG Q   RNLT+ EI+ Q+ LA  +L +          ++    R I+N+VMMGM
Sbjct: 114 CTFCSTGRQGFNRNLTSGEIVGQLWLANKMLREQANYR-----LLAHEDRIITNVVMMGM 168

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N+++V  +L +  D      S+RR+TLSTSG +P I ++ ++  V LAISLHA  
Sbjct: 169 GEPLTNYNHVVHALEMMLDDHVYGLSRRRVTLSTSGLIPAIDKLRDDCPVSLAISLHAPD 228

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           + LR+ +VPIN+KYPL+ L+ AC  Y   +    +TFEYVML+G+NDS   A  L+K++K
Sbjct: 229 DKLRDEIVPINKKYPLQDLMAACIRYIEKAPRDFVTFEYVMLEGVNDSVDQAKALVKLVK 288

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +P K NLIPFNP+P   YLCS +  I  F + +  +G  + +R  RG DI AACGQL  
Sbjct: 289 NVPCKFNLIPFNPFPNSGYLCSSRSVINAFKQVLMDAGLVATVRKTRGDDIDAACGQLAG 348

Query: 368 LSKRIPKVPRQ 378
             +   K   +
Sbjct: 349 QVQDKTKRTMR 359


>gi|91788473|ref|YP_549425.1| hypothetical protein Bpro_2611 [Polaromonas sp. JS666]
 gi|123164823|sp|Q12AB5|RLMN_POLSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|91697698|gb|ABE44527.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas sp. JS666]
          Length = 382

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 149/383 (38%), Positives = 209/383 (54%), Gaps = 25/383 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+    E L      +G      R R +Q+++WI+ +G  DF  M+D+++ +R  L   
Sbjct: 4   NLLDYDLEGLAAFCEGLG----EKRFRATQLFRWIHQKGASDFGQMTDLARSLREKLAGS 59

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             I  P++V    S DGT KWL       +G    IE V+IPE  RGTLC+SSQ GC++ 
Sbjct: 60  AHIQGPKVVSRHDSADGTIKWLF-----DVGAGDVIEAVFIPETDRGTLCISSQAGCAVG 114

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG Q   RNLT  EI+ Q+  A   L    G ++          R ISN+VMMGM
Sbjct: 115 CRFCSTGHQGFSRNLTTGEIVSQLWFAEHFLRQHLGRQE----------RVISNVVMMGM 164

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N+  +  +L +  D  G   S+RR+T+STSG VP I R+ ++  V LA+SLHA  
Sbjct: 165 GEPLQNYSQLVPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQ 224

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           + LR+ LVP+N+KYP+  L+ AC  Y   +    ITFEY ML G+ND P  A  L+ +++
Sbjct: 225 DALRDSLVPLNKKYPIAELLQACTRYQASAPRDFITFEYCMLDGVNDQPEHARQLVALMQ 284

Query: 308 -----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
                G+  K NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI AAC
Sbjct: 285 NHSAGGLSCKFNLIPFNPFPASGLKRSAMPQVAAFAKILMDAGIVTTVRKTRGDDIDAAC 344

Query: 363 GQLKSLSKRIPKVPRQ-EMQITG 384
           GQL    +    V R+   Q  G
Sbjct: 345 GQLAGDVQDRTSVDRRIAAQRQG 367


>gi|241764492|ref|ZP_04762513.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
 gi|241366076|gb|EER60673.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
          Length = 373

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 154/384 (40%), Positives = 214/384 (55%), Gaps = 25/384 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + +L+ +  + L +   ++G      R R +Q+++WI+ RG  DF  MSD++  +R  L 
Sbjct: 2   RTNLLELDLDGLADFCGQLG----EKRFRATQLFRWIHQRGASDFDAMSDLAVALRTKLK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +    ++ E +S DGT KWL       +G    +E+V+IPE  RGTLCVSSQ GC+
Sbjct: 58  GCAFVQALPVISEHVSADGTVKWLF-----DVGDGNAVESVFIPEDDRGTLCVSSQAGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q   RNLT  EI+ Q+  A   L             + +  R ISN+VMM
Sbjct: 113 VGCRFCSTGHQGFSRNLTTGEIVAQLWFAEHALRK----------RLATQSRVISNVVMM 162

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N+  +  +L +  D  G   S+RR+T+STSG VP + R+ ++  V LA+SLHA
Sbjct: 163 GMGEPLQNYTALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHA 222

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LR+ LVP+NRKYPLE L+DACR Y   +    ITFEY ML G+ND    A  LI +
Sbjct: 223 PNDALRDNLVPLNRKYPLEELLDACRRYLEHAPRDFITFEYCMLDGVNDQVEHARQLIAL 282

Query: 306 LK-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           +       I  K NLIPFNP+P    L S    +  F++ +  +G  + +R  RG DI A
Sbjct: 283 VNPAQGVPIRCKFNLIPFNPFPASGLLRSPSAQVAMFAKVLSDAGIVTTVRKTRGDDIDA 342

Query: 361 ACGQLKSLSK-RIPKVPRQEMQIT 383
           ACGQL    K R   V R   Q T
Sbjct: 343 ACGQLAGDVKDRTRAVERMAKQRT 366


>gi|149908872|ref|ZP_01897532.1| Hypothetical protein yfgB [Moritella sp. PE36]
 gi|149808146|gb|EDM68087.1| Hypothetical protein yfgB [Moritella sp. PE36]
          Length = 371

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 160/383 (41%), Positives = 217/383 (56%), Gaps = 25/383 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ + +    IG        R  Q+ KWIY  G  D   M+++++++R  L
Sbjct: 4   KKINLLDLDRKAMRQYFADIG----EKPFRADQVMKWIYHEGCDDINEMTNLNKKLREKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PEI  E+ S DGT KW L+          E ETVYIP+  R TLCVSSQVGC
Sbjct: 60  LRETVIQAPEISKEQRSADGTIKWALKV------DGQEYETVYIPDGDRATLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VM
Sbjct: 114 ALECTFCSTAQQGFNRNLRVSEIIGQVWRASQVIG------------FNNKKRAITNVVM 161

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  N+  +L+I  D  G   SKRR+T+STSG VP + ++ + I V LAISLH
Sbjct: 162 MGMGEPLLNMTNLVPALNIMLDDYGFGLSKRRVTVSTSGVVPALDKLADSIDVALAISLH 221

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302
           A ++ LR+ LVPIN+KY +EML+ + ++Y G SNA R  +T EYV+L  +NDS   A  L
Sbjct: 222 ASNDTLRDELVPINKKYNIEMLLASVKNYIGKSNANRKKVTIEYVLLDHVNDSTDQAHEL 281

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK  P KINLIPFNP+PG +Y       I  F++ +     +  IR  RG DI AAC
Sbjct: 282 AHLLKDTPCKINLIPFNPFPGSDYGKPSNSRIDRFNKVLMEYENTVTIRKTRGDDIDAAC 341

Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384
           GQL      R  +  ++ MQ   
Sbjct: 342 GQLAGDVIDRTKRTLKKRMQGEA 364


>gi|297183711|gb|ADI19836.1| predicted Fe-S cluster redox enzyme [uncultured alpha
           proteobacterium EB000_37G09]
          Length = 388

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 190/370 (51%), Positives = 258/370 (69%), Gaps = 18/370 (4%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + SL+    + LE  ++ +G+P    + R  Q+W W++  G+ DF  M+D+ + ++ LL+
Sbjct: 24  RRSLLSFEPDALEAEMIALGLP----KFRARQLWGWVWRHGVTDFSDMTDLGKPLQALLS 79

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F +  P +   + S DGT KWL++          E ETVYIP+  RGTLC+SSQ+GC+
Sbjct: 80  ERFHVDRPAVSRRQDSSDGTIKWLIKLSD-----GQEAETVYIPDDGRGTLCISSQIGCT 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQ+LVRNL+ +EI  Q+LLA   LGD+P             GR+++NIV+M
Sbjct: 135 LTCSFCHTGTQRLVRNLSVDEICGQILLAMDELGDWPATRP---------GRRLTNIVLM 185

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N+D V  ++ I   + G+  SKRRITLSTSG VP I R G ++GV LAISLHA
Sbjct: 186 GMGEPLYNYDYVASAMRIIMSNEGVGVSKRRITLSTSGIVPEITRCGNDLGVNLAISLHA 245

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           V ++LRN LVPINRKY L+ LID  R YPGLSNARR+T+EYVM+ G+NDS  DA  L+++
Sbjct: 246 VRDELRNTLVPINRKYNLKTLIDTVRAYPGLSNARRVTWEYVMIDGVNDSEADARALVRL 305

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           + GIP+KINLIPFNPWPG +Y CS+ + I  F++ + ++GY+SP+RTPRG DILAACGQL
Sbjct: 306 ISGIPSKINLIPFNPWPGTDYKCSNDETIDKFAKIVMKAGYASPVRTPRGRDILAACGQL 365

Query: 366 KSLSKRIPKV 375
           KS S R+   
Sbjct: 366 KSDSVRLRAS 375


>gi|226954474|ref|ZP_03824938.1| radical SAM protein [Acinetobacter sp. ATCC 27244]
 gi|294651490|ref|ZP_06728803.1| Fe-S-cluster oxidoreductase [Acinetobacter haemolyticus ATCC 19194]
 gi|226834823|gb|EEH67206.1| radical SAM protein [Acinetobacter sp. ATCC 27244]
 gi|292822640|gb|EFF81530.1| Fe-S-cluster oxidoreductase [Acinetobacter haemolyticus ATCC 19194]
          Length = 413

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 169/396 (42%), Positives = 228/396 (57%), Gaps = 32/396 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+GM R ELE+    +G      + R  Q+ KWI+   + DF  M++IS ++R  L
Sbjct: 31  NKVNLLGMSRAELEKFFEDLG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLREKL 86

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120
            +   I  PE+V    S DGTRKW+ R      G    +ETV IP +     R TLC+SS
Sbjct: 87  EKICEIKAPEVVHRNYSKDGTRKWVFRVGD---GEGSLVETVLIPAEDKTGARKTLCISS 143

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L CSFC TG Q   R+LT  EI+ Q+ +A     +     + E        R ++
Sbjct: 144 QVGCALDCSFCSTGKQGFQRDLTPAEIIGQLWMANYSYMEEVPVAERE--------RTVT 195

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N+D V  S+ +  D      SKRR+TLSTSG VP I ++ ++I V LA
Sbjct: 196 NVVMMGMGEPLLNYDAVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALA 255

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296
           ISLHA +++LRN LVPIN+KYPL+ LI AC+ Y       S  R +T EYVML G+ND P
Sbjct: 256 ISLHAPNDELRNELVPINKKYPLQQLIAACQRYLAKDGNESARRHVTIEYVMLDGVNDQP 315

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L+K+LK +P+KINLIPFNP+P   Y  S +  I+ F + +  +G+   IR  RG 
Sbjct: 316 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGD 375

Query: 357 DILAACGQL---------KSLSKRIPKVPRQEMQIT 383
           DI AACGQL         ++   +     RQE+  T
Sbjct: 376 DIDAACGQLVGQVADRTRRAEQWKKKVAQRQEILRT 411


>gi|302878623|ref|YP_003847187.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2]
 gi|302581412|gb|ADL55423.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2]
          Length = 363

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 158/371 (42%), Positives = 213/371 (57%), Gaps = 22/371 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+ +    L     ++G        R  Q+ +WIY  G  DF  M+DI+  +R+ L Q
Sbjct: 2   QNLLDLDAHALTAYFTEMG----EKPFRAKQLLRWIYQVGESDFAAMTDIAAVLRNKLAQ 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P+IV E++S DGTRKWLL      +G    +E VYIPE +RGTLC+SSQ GC+L
Sbjct: 58  SACITVPDIVREELSDDGTRKWLL-----SVGSGNAVEAVYIPESARGTLCISSQAGCAL 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC TG Q   RNLT  EI+ Q+  A   LG                   +SN+VMMG
Sbjct: 113 DCSFCSTGKQGFNRNLTVAEIIGQLWWANHQLGKNS-----------EGNWPVSNVVMMG 161

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NFDN   +L +  D      S+RR+T+STSG VP + R+ EE  V LA+SLHA 
Sbjct: 162 MGEPLLNFDNTVSALRLMLDDQAYGLSRRRVTVSTSGIVPAMDRLREECPVALAVSLHAP 221

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVP+N+KYPL+ L+ AC+ Y   +    ITFEYVML G+ND+ + A  L++++
Sbjct: 222 NDALRDKLVPVNQKYPLKELLGACQRYLEKAPRDFITFEYVMLDGVNDTVQHAHELVRLV 281

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           K  P K NLIPFNP+P   Y  S    I  F + + ++   +  R  RG DI AACGQL 
Sbjct: 282 KDTPCKFNLIPFNPFPLSPYKRSRPDAIQRFRDVLMQADIITTTRKTRGDDIAAACGQLA 341

Query: 367 SLSKRIPKVPR 377
                + K  R
Sbjct: 342 GQV--LDKTRR 350


>gi|218234565|ref|YP_002368665.1| conserved hypothetical protein TIGR00048 [Bacillus cereus B4264]
 gi|229152063|ref|ZP_04280258.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           m1550]
 gi|254807154|sp|B7HDY7|RLMN_BACC4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|218162522|gb|ACK62514.1| conserved hypothetical protein TIGR00048 [Bacillus cereus B4264]
 gi|228631412|gb|EEK88046.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           m1550]
          Length = 362

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 207/370 (55%), Gaps = 25/370 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            +KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R 
Sbjct: 13  EMKKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRD 68

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L+  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QV
Sbjct: 69  KLSNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQV 123

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++
Sbjct: 124 GCRIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSL 169

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AI
Sbjct: 170 VVMGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAI 229

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +++LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  
Sbjct: 230 SLHAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEE 288

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AA
Sbjct: 289 LAALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAA 348

Query: 362 CGQLKSLSKR 371
           CGQL++  ++
Sbjct: 349 CGQLRAKERK 358


>gi|213028233|ref|ZP_03342680.1| hypothetical protein Salmonelentericaenterica_40390 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 356

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 154/356 (43%), Positives = 203/356 (57%), Gaps = 19/356 (5%)

Query: 29  RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88
                R  Q+ KW+Y     +F  M+DI++ +R  L +   I  PE+V+E+ S DGT KW
Sbjct: 8   GEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKW 67

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
            +            +ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+
Sbjct: 68  AIAVGD------QRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEII 121

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            QV  A  ++G              +  R I+N+VMMGMGEPL N  NV  ++ I  D  
Sbjct: 122 GQVWRAAKIVG----------AAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDF 171

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           G   SKRR+TLSTSG VP + ++G+ I V LAISLHA ++ +R+ +VPIN+KY +E  + 
Sbjct: 172 GFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLG 231

Query: 269 ACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           A R Y   SNA   R+T EYVML  +ND    A  L ++LK  P KINLIP+NP+PG  Y
Sbjct: 232 AVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKETPCKINLIPWNPFPGAPY 291

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQ 381
             S    I  FS+ +   G+++ +R  RG DI AACGQL      R  +  R+ MQ
Sbjct: 292 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 347


>gi|152976230|ref|YP_001375747.1| radical SAM protein [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|205829663|sp|A7GRJ4|RLMN_BACCN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|152024982|gb|ABS22752.1| radical SAM enzyme, Cfr family [Bacillus cytotoxicus NVH 391-98]
          Length = 362

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 207/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E++E L + G P    + R  QI+ W+Y + +++++ M+++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQEWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMTNLSKGLREKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TNERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D++   L I +   G++   R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDHLMSFLRIVNHEKGINIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + +LR+ L+PINR Y L  L++A ++Y   +   R+TFEY +  G ND    A  L 
Sbjct: 232 HAPNTELRSKLMPINRAYKLPDLMEAIKYYINRTGR-RVTFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 QLLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKNRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|239815175|ref|YP_002944085.1| radical SAM enzyme, Cfr family [Variovorax paradoxus S110]
 gi|239801752|gb|ACS18819.1| radical SAM enzyme, Cfr family [Variovorax paradoxus S110]
          Length = 382

 Score =  443 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 146/380 (38%), Positives = 212/380 (55%), Gaps = 21/380 (5%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +   +L+    E L     K+G      R R +Q+++WI+ RG  DF  M+D+++ +R  
Sbjct: 1   MTTANLLEFDLEGLAAFCEKLG----EKRFRATQLFRWIHQRGASDFAQMTDLAKSLREK 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L     +    ++ +  S DGT KWL       +G    +E V+IPE  RGTLCVSSQ G
Sbjct: 57  LATTARVEALPVITQHESKDGTIKWLF-----DVGDGNAVEAVFIPEDDRGTLCVSSQAG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TG Q   RNL+  EI+ Q+  A   L      ++          R ISN+V
Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTGEIVAQLWFAEHFLRKHLKRDE----------RVISNVV 161

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N+  +  +L    D      S+RR+T+STSG VP I R+G +  V +A+SL
Sbjct: 162 MMGMGEPLQNYTALVPALRTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGADCPVAMAVSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++ LR+ LVP+NRKYP+  L++AC+ Y   +    ITFEY ML G+ND P  A  L+
Sbjct: 222 HAPNDALRDDLVPLNRKYPIAELLEACKRYLVHAPRDFITFEYCMLDGVNDQPEHARQLV 281

Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           ++++  G+  K NLIPFNP+P    L S Q  ++ F++ +  +G  + +R  RG DI AA
Sbjct: 282 ELVRTHGVSCKFNLIPFNPFPASGLLRSPQPRVLAFAKALSEAGLVTTVRKTRGDDIDAA 341

Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
           CGQL    K   +   +  Q
Sbjct: 342 CGQLAGDVKDRTRAAERMAQ 361


>gi|300113467|ref|YP_003760042.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
 gi|299539404|gb|ADJ27721.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
          Length = 372

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 171/379 (45%), Positives = 225/379 (59%), Gaps = 20/379 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + +L+ + R  LE     +G        R  Q+ +WIY R + DF  M+D+++ +R  L 
Sbjct: 5   RTNLLNLDRAGLEAFFTCLG----EKPFRARQVLRWIYQRFVTDFSAMTDLNKSLRKRLA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PEIV +  S DGTRKWLLR     I G   IETV+IPE+ RGTLC+SSQVGC 
Sbjct: 61  ESAVISLPEIVQQHRSADGTRKWLLR-----IHGNNCIETVFIPEEDRGTLCISSQVGCI 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL   EI+ Q+ LA  +LG  P  E           R I+N+VMM
Sbjct: 116 LDCSFCATGKQGFNRNLAISEIIGQLWLANKILGRTPKGE-----------RIITNVVMM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++++  D      S RR+TLST+G VP I R+     V LA+SLHA
Sbjct: 165 GMGEPLANFNNVVAAMNLMLDDFSYGLSWRRVTLSTAGMVPAIDRLRAVCPVSLAVSLHA 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LR+ LVP+N+KYPLE L+ ACR Y      R +TFEYVML  +NDS   A  L+++
Sbjct: 225 PTDKLRDELVPLNKKYPLEDLLSACRRYVAGDRRRAVTFEYVMLADVNDSFSHARALLRL 284

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+PAK+NLIPFNP+PG  Y  SD + I  F E + R G  +  R  RG DI AACGQL
Sbjct: 285 LQGLPAKVNLIPFNPFPGSVYRRSDAETIDRFREKLLRGGIMTVTRKTRGDDIAAACGQL 344

Query: 366 KSLSKRIPKVPRQEMQITG 384
               +   +      ++ G
Sbjct: 345 AGQVQDRTRRTMDRQRLVG 363


>gi|194365435|ref|YP_002028045.1| radical SAM enzyme, Cfr family [Stenotrophomonas maltophilia
           R551-3]
 gi|254807214|sp|B4SSW3|RLMN_STRM5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|194348239|gb|ACF51362.1| radical SAM enzyme, Cfr family [Stenotrophomonas maltophilia
           R551-3]
          Length = 401

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 160/382 (41%), Positives = 227/382 (59%), Gaps = 28/382 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L+ + R  LE+  +++       + R  Q+ KWI+ R + +F  M+D+ + +R  L 
Sbjct: 22  KQNLLDLDRAGLEKFFVEV---LGEKKFRAHQVMKWIHHRYVTEFDEMTDLGKVLRAKLQ 78

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +H  ++ P IV +K S DGT KWLL      + G   IETVYIP+K+RGTLCVSSQVGC 
Sbjct: 79  EHAEVLVPNIVFDKPSADGTHKWLLAM---GVDGKNAIETVYIPDKTRGTLCVSSQVGCG 135

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VMM
Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWIAARHLGN-----------VPHQMRRLTNVVMM 184

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSTESDVSLAVSLHA 244

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LR  LVP+N+KYP+  L+ +C  Y         +TFEY ++KGIND P  A  L +
Sbjct: 245 PNDALRETLVPLNKKYPIAELMASCARYLRANKRRESVTFEYTLMKGINDKPEHARELAR 304

Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
           +++            K+NLIPFNP+PG  Y  S++  I  F + +  S   + +R  RG 
Sbjct: 305 LMRQFDNAVQAKDSGKVNLIPFNPFPGTRYERSEEAHIRAFQKILLDSNVLTMVRRTRGD 364

Query: 357 DILAACGQLKSLSKRIPKVPRQ 378
           DI AACGQLK     + +  RQ
Sbjct: 365 DIDAACGQLKGQV--MDRTRRQ 384


>gi|205829851|sp|Q82XV4|RLMN_NITEU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 379

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 158/383 (41%), Positives = 217/383 (56%), Gaps = 16/383 (4%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+   + EL     ++G        R  Q+ +W++  G  DF  MSD+++  RH L +
Sbjct: 2   INLLDFNKTELVRFCGEMG----EKPYRARQLLRWVHQSGKTDFMEMSDLAKGFRHKLME 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +  PEIV +  + DGTRKWLL       G    +E V+IPE SRGTLCVSSQVGC+L
Sbjct: 58  CAVVQLPEIVSDHTAGDGTRKWLL-----STGAGNAVEMVFIPEPSRGTLCVSSQVGCAL 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSL-----LGDFPGCEDIEGMVIPSVGRKISN 181
            CSFC TG Q   RNL+  EI+ Q+  A  L        FP          P   R ++N
Sbjct: 113 ACSFCSTGRQGFNRNLSVAEIIGQLWWANRLLEAGSHDPFPLDTTRVQTDKPETRRPVTN 172

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL NF+N+  +L +         S+RR+T+STSG VP + R+ E   V LA+
Sbjct: 173 VVMMGMGEPLANFENLVTALDLMLSDDAYGLSRRRVTVSTSGLVPALDRLRERCPVALAV 232

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA ++ LR+ LVPIN+KYP+  L+ AC  Y   +    ITFEYVMLKG+NDS   A  
Sbjct: 233 SLHAPNDALRDQLVPINKKYPIRDLLAACERYLPAAPRDFITFEYVMLKGVNDSVALARE 292

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++++ +P K+NLIPFN + G  Y  S  + I  F + + ++G  + +R  RG DI AA
Sbjct: 293 LVQLVRNVPCKLNLIPFNAFSGSGYERSGAEAIGNFRDVLMQAGIVTTVRKTRGDDIAAA 352

Query: 362 CGQLKSLSKRIPKVPRQEMQITG 384
           CGQL    +   K  R     TG
Sbjct: 353 CGQLAGQVR--DKTRRTSGCGTG 373


>gi|325915372|ref|ZP_08177689.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538419|gb|EGD10098.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 401

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/384 (42%), Positives = 228/384 (59%), Gaps = 28/384 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K++L+ + RE LE    +        R R  Q+ KWI+ R + DF  M+D+ + +R  
Sbjct: 20  MRKQNLLDLDREGLERFFAE---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAK 76

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+QH  ++ P +V +K S DGT KWLL        G   +ETVYIP+KSRGTLCVSSQVG
Sbjct: 77  LHQHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAVETVYIPDKSRGTLCVSSQVG 133

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+V
Sbjct: 134 CGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 182

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SL
Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSAESDVSLAVSL 242

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNL 302
           HA ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  L
Sbjct: 243 HAANDSLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 302

Query: 303 IKILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  R
Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 362

Query: 355 GLDILAACGQLKSLSKRIPKVPRQ 378
           G DI AACGQLK     + +  RQ
Sbjct: 363 GDDIDAACGQLKGQV--MDRTRRQ 384


>gi|15615069|ref|NP_243372.1| hypothetical protein BH2506 [Bacillus halodurans C-125]
 gi|81786443|sp|Q9K9Y8|RLMN_BACHD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|10175126|dbj|BAB06225.1| BH2506 [Bacillus halodurans C-125]
          Length = 362

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 203/366 (55%), Gaps = 25/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+  +  EELE  L + G P    + R +QI++W+Y + ++ FQ M+++S+++R  L +
Sbjct: 17  PSIYTLQFEELEMWLKEQGEP----KFRATQIFEWLYEKRVKQFQEMTNLSKDLRAKLEK 72

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           HF++   + V ++ S DGT K+L             IETV +      ++CV++QVGC L
Sbjct: 73  HFNLTTLKTVTKQQSSDGTIKFLFELHD-----GYSIETVVMRHNYGNSVCVTTQVGCRL 127

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L RNL A EI+ QV+ A+  + +               G ++ +IV+MG
Sbjct: 128 GCTFCASTLGGLKRNLEAGEIVAQVVEAQRAMDE--------------QGERVGSIVVMG 173

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEP  N+  +   L   +   GL+   R IT+STSG VP I +  +E + +  AISLHA
Sbjct: 174 IGEPFDNYQALMPFLKTVNHDKGLNIGARHITVSTSGVVPKIYQFADEGLQINFAISLHA 233

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + +LR+ L+P+NR +PL  L+DA R+Y   +   R+TFEY +  G ND    A  L  +
Sbjct: 234 PNTELRSKLMPVNRAWPLPKLMDAIRYYIDKTGR-RVTFEYGLFGGENDQVEHAEELADL 292

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +K I   +NLIP N  P  +Y+ + +  I  F   +K  G +  IR  +G DI AACGQL
Sbjct: 293 IKDIKCHVNLIPVNYVPERDYVRTPRDQIFAFERTLKERGVNVTIRREQGHDIDAACGQL 352

Query: 366 KSLSKR 371
           ++  ++
Sbjct: 353 RAKERK 358


>gi|30263867|ref|NP_846244.1| hypothetical protein BA_4002 [Bacillus anthracis str. Ames]
 gi|42782956|ref|NP_980203.1| hypothetical protein BCE_3906 [Bacillus cereus ATCC 10987]
 gi|47529293|ref|YP_020642.1| hypothetical protein GBAA_4002 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186714|ref|YP_029966.1| ribosomal RNA large subunit methyltransferase N [Bacillus anthracis
           str. Sterne]
 gi|52141624|ref|YP_085205.1| hypothetical protein BCZK3623 [Bacillus cereus E33L]
 gi|65321191|ref|ZP_00394150.1| COG0820: Predicted Fe-S-cluster redox enzyme [Bacillus anthracis
           str. A2012]
 gi|118479086|ref|YP_896237.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           thuringiensis str. Al Hakam]
 gi|167636419|ref|ZP_02394718.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0442]
 gi|167641154|ref|ZP_02399409.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0193]
 gi|170688817|ref|ZP_02880020.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0465]
 gi|170708820|ref|ZP_02899256.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0389]
 gi|190565819|ref|ZP_03018738.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis
           Tsiankovskii-I]
 gi|196035941|ref|ZP_03103343.1| conserved hypothetical protein TIGR00048 [Bacillus cereus W]
 gi|196038756|ref|ZP_03106064.1| conserved hypothetical protein TIGR00048 [Bacillus cereus
           NVH0597-99]
 gi|196047439|ref|ZP_03114651.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB108]
 gi|206976736|ref|ZP_03237640.1| conserved hypothetical protein TIGR00048 [Bacillus cereus H3081.97]
 gi|217961284|ref|YP_002339852.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH187]
 gi|218904994|ref|YP_002452828.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH820]
 gi|222097309|ref|YP_002531366.1| ribosomal RNA large subunit methyltransferase n [Bacillus cereus
           Q1]
 gi|225865845|ref|YP_002751223.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB102]
 gi|228916501|ref|ZP_04080067.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928912|ref|ZP_04091944.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935178|ref|ZP_04098005.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947583|ref|ZP_04109873.1| Radical SAM family enzyme [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228987007|ref|ZP_04147133.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229092907|ref|ZP_04224041.1| Radical SAM family enzyme [Bacillus cereus Rock3-42]
 gi|229123378|ref|ZP_04252582.1| Radical SAM family enzyme [Bacillus cereus 95/8201]
 gi|229140510|ref|ZP_04269065.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST26]
 gi|229157440|ref|ZP_04285518.1| Radical SAM family enzyme [Bacillus cereus ATCC 4342]
 gi|229186104|ref|ZP_04313273.1| Radical SAM family enzyme [Bacillus cereus BGSC 6E1]
 gi|229197975|ref|ZP_04324689.1| Radical SAM family enzyme [Bacillus cereus m1293]
 gi|229603263|ref|YP_002868101.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0248]
 gi|254683427|ref|ZP_05147287.1| hypothetical protein BantC_06200 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721396|ref|ZP_05183185.1| hypothetical protein BantA1_02905 [Bacillus anthracis str. A1055]
 gi|254735903|ref|ZP_05193609.1| hypothetical protein BantWNA_12161 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254739849|ref|ZP_05197542.1| hypothetical protein BantKB_02319 [Bacillus anthracis str. Kruger
           B]
 gi|254756704|ref|ZP_05208733.1| hypothetical protein BantA9_00135 [Bacillus anthracis str.
           Australia 94]
 gi|301055355|ref|YP_003793566.1| radical SAM enzyme [Bacillus anthracis CI]
 gi|81409444|sp|Q732K6|RLMN_BACC1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81686555|sp|Q636G2|RLMN_BACCZ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81715534|sp|Q81WH4|RLMN_BACAN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829662|sp|A0RHN7|RLMN_BACAH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807149|sp|C3P635|RLMN_BACAA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807151|sp|B7JJV1|RLMN_BACC0 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807153|sp|C1EP88|RLMN_BACC3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807155|sp|B7HLJ7|RLMN_BACC7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807156|sp|B9IVF3|RLMN_BACCQ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|30258511|gb|AAP27730.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           Ames]
 gi|42738883|gb|AAS42811.1| conserved hypothetical protein TIGR00048 [Bacillus cereus ATCC
           10987]
 gi|47504441|gb|AAT33117.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49180641|gb|AAT56017.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           Sterne]
 gi|51975093|gb|AAU16643.1| conserved hypothetical protein; radical SAM family [Bacillus cereus
           E33L]
 gi|118418311|gb|ABK86730.1| 23S rRNA m(2)A-2503 methyltransferase [Bacillus thuringiensis str.
           Al Hakam]
 gi|167510934|gb|EDR86325.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0193]
 gi|167528161|gb|EDR90948.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0442]
 gi|170126305|gb|EDS95196.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0389]
 gi|170667172|gb|EDT17932.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0465]
 gi|190562738|gb|EDV16704.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991590|gb|EDX55556.1| conserved hypothetical protein TIGR00048 [Bacillus cereus W]
 gi|196021747|gb|EDX60442.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB108]
 gi|196030479|gb|EDX69078.1| conserved hypothetical protein TIGR00048 [Bacillus cereus
           NVH0597-99]
 gi|206745046|gb|EDZ56449.1| conserved hypothetical protein TIGR00048 [Bacillus cereus H3081.97]
 gi|217063048|gb|ACJ77298.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH187]
 gi|218536040|gb|ACK88438.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH820]
 gi|221241367|gb|ACM14077.1| conserved hypothetical protein [Bacillus cereus Q1]
 gi|225788055|gb|ACO28272.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB102]
 gi|228585454|gb|EEK43558.1| Radical SAM family enzyme [Bacillus cereus m1293]
 gi|228597280|gb|EEK54931.1| Radical SAM family enzyme [Bacillus cereus BGSC 6E1]
 gi|228626167|gb|EEK82916.1| Radical SAM family enzyme [Bacillus cereus ATCC 4342]
 gi|228643071|gb|EEK99347.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST26]
 gi|228660154|gb|EEL15790.1| Radical SAM family enzyme [Bacillus cereus 95/8201]
 gi|228690529|gb|EEL44312.1| Radical SAM family enzyme [Bacillus cereus Rock3-42]
 gi|228772785|gb|EEM21225.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228812103|gb|EEM58434.1| Radical SAM family enzyme [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228824543|gb|EEM70348.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830719|gb|EEM76324.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843080|gb|EEM88162.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229267671|gb|ACQ49308.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0248]
 gi|300377524|gb|ADK06428.1| radical SAM enzyme [Bacillus cereus biovar anthracis str. CI]
 gi|324327762|gb|ADY23022.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 362

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------SEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|325981894|ref|YP_004294296.1| ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp.
           AL212]
 gi|325531413|gb|ADZ26134.1| Ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp.
           AL212]
          Length = 366

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 159/379 (41%), Positives = 220/379 (58%), Gaps = 19/379 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+    + L +   +IG        R  Q+ +WI+  GI DF  MSD+++ +R  L  
Sbjct: 3   VNLLNYDNKSLVDFCTEIG----EKPFRARQLLRWIHQFGIADFDLMSDLAKGLREKLAT 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P I+ + ++ DGTRKWLL      +G    IETV+IPE SRGTLC+SSQVGC+L
Sbjct: 59  QAVIELPTIMSDYVAADGTRKWLL-----SVGAGNGIETVFIPEISRGTLCISSQVGCAL 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG Q   RNLT  EI+ Q+ +A  +       E           R ++N+VMMG
Sbjct: 114 ACTFCSTGKQGFNRNLTVAEIIGQLWIANKM------LETCGDDTKLQTKRAVTNVVMMG 167

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+NV  +L +  D      S+RR+T+STSG VP I R+ E   V LA+SLHA 
Sbjct: 168 MGEPLANFENVVTALDLMLDDHAYGLSRRRVTVSTSGLVPAIDRLRERCPVALAVSLHAP 227

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVPIN+KYP++ L+ AC+ Y   +    ITFEYVML GINDS   A  L+K++
Sbjct: 228 NDTLRDQLVPINKKYPIKELLAACQRYLSAAPRDFITFEYVMLDGINDSVAHACELVKLV 287

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + IP K NLIPFN +    Y  S  + I  F + +  +G  + +R  RG DI AACGQL 
Sbjct: 288 QDIPCKFNLIPFNSFSDSGYKRSSTEAIRVFRDVLVHAGLITTVRKTRGDDIAAACGQLA 347

Query: 367 SLSK----RIPKVPRQEMQ 381
              K    R+ ++  + +Q
Sbjct: 348 GQVKDKTHRLTRLKIETIQ 366


>gi|165872311|ref|ZP_02216948.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0488]
 gi|227813228|ref|YP_002813237.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           CDC 684]
 gi|254751039|ref|ZP_05203078.1| hypothetical protein BantV_01167 [Bacillus anthracis str. Vollum]
 gi|254807150|sp|C3L763|RLMN_BACAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|164711987|gb|EDR17527.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           A0488]
 gi|227006974|gb|ACP16717.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str.
           CDC 684]
          Length = 362

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLHTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------SEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|258619955|ref|ZP_05714995.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258627187|ref|ZP_05721975.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580489|gb|EEW05450.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258587688|gb|EEW12397.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 396

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 146/386 (37%), Positives = 209/386 (54%), Gaps = 27/386 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ L     +          R  Q+ KWIY  G  DF  M++I++++R 
Sbjct: 25  TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 81

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW +R          ++ETVYIPE+ R TLCVSSQV
Sbjct: 82  KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQV 135

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 136 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 185

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 186 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 245

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA +++LR+ ++PIN ++ ++  +   R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 246 LHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 305

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++KG P KINLIPFNP+PG  Y       I  F + + +  ++  IR  RG DI A
Sbjct: 306 ELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 365

Query: 361 ACGQL------KSLSKRIPKVPRQEM 380
           ACGQL      ++   +  +   Q +
Sbjct: 366 ACGQLVGDVIDRTKRTKAKQFAEQAI 391


>gi|260773387|ref|ZP_05882303.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           metschnikovii CIP 69.14]
 gi|260612526|gb|EEX37729.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           metschnikovii CIP 69.14]
          Length = 373

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 149/386 (38%), Positives = 212/386 (54%), Gaps = 27/386 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ L     +          R  QI KWIY  G  DF+ M++I++ +R 
Sbjct: 2   TTEKVNLLDFDRKGLRTYFAE---ELGEKAFRADQIMKWIYHFGCDDFEKMTNINKNLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L  H  I  P + D + S DGT KW +R          ++ETVYIPE+ R TLCVSSQV
Sbjct: 59  KLQTHCEIRAPYVSDAQYSSDGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L +  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++KG P KINLIPFNP+PG  Y       I  F + + +  ++  IR  RG DI A
Sbjct: 283 ELAQLMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342

Query: 361 ACGQL------KSLSKRIPKVPRQEM 380
           ACGQL      ++   ++ + P Q +
Sbjct: 343 ACGQLVGDVIDRTKRTKLKQQPEQII 368


>gi|49481621|ref|YP_037925.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|81395090|sp|Q6HEV1|RLMN_BACHK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|49333177|gb|AAT63823.1| conserved hypothetical protein, radical SAM family [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 362

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKTSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------SEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|53802993|ref|YP_115280.1| hypothetical protein MCA2887 [Methylococcus capsulatus str. Bath]
 gi|81680833|sp|Q603C0|RLMN_METCA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|53756754|gb|AAU91045.1| conserved hypothetical protein TIGR00048 [Methylococcus capsulatus
           str. Bath]
          Length = 366

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/377 (43%), Positives = 228/377 (60%), Gaps = 26/377 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           +   + +L+ + RE +E   +++G        R SQ+ +WI+ RG+ DF  M+++S+ +R
Sbjct: 9   DTETRVNLLDLDREGMEAFFVRLG----EKPFRASQLLQWIHQRGVTDFGLMTNLSKTLR 64

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L     I  PE+V E+ S DGTRKW+L+     +     +ETV IP++ R TLCVSSQ
Sbjct: 65  SRLEAVSEIRPPELVLEQRSADGTRKWVLQ-----VDAVNRVETVLIPDEGRNTLCVSSQ 119

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGCSL CSFC T  Q   RNLT  EI+ Q+ +A+  L +                ++ISN
Sbjct: 120 VGCSLECSFCSTARQGFNRNLTTAEIIGQLWVAQHRLDE---------------EQRISN 164

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +V+MGMGEPL NF NV  +  +  D      SKRR+TLSTSG VP + R+ E   + LA+
Sbjct: 165 VVLMGMGEPLLNFGNVVAATRLMMDDFAYGLSKRRVTLSTSGIVPALDRLAEVSDISLAV 224

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  + LRN LVPINRKYP+  L+ AC+ Y G  N R++TFEYVML G+ND P  A  
Sbjct: 225 SLHAPDDTLRNELVPINRKYPIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARA 284

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++L  +P+K+NLIPFNP+P   Y CS  + I  F++ ++ +G  +  R  RG DI AA
Sbjct: 285 LVRLLSHVPSKVNLIPFNPFPNSAYRCSHPETIARFAQTLQDAGLITTTRKTRGRDIDAA 344

Query: 362 CGQLKSLSKRIPKVPRQ 378
           CGQL  + K   +  RQ
Sbjct: 345 CGQL--VGKVNDRSRRQ 359


>gi|30021952|ref|NP_833583.1| radical SAM protein [Bacillus cereus ATCC 14579]
 gi|206971090|ref|ZP_03232041.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH1134]
 gi|228960080|ref|ZP_04121744.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229047551|ref|ZP_04193141.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           AH676]
 gi|229111335|ref|ZP_04240888.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock1-15]
 gi|229129140|ref|ZP_04258113.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           BDRD-Cer4]
 gi|229146435|ref|ZP_04274806.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           BDRD-ST24]
 gi|81580507|sp|Q819U3|RLMN_BACCR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|29897508|gb|AAP10784.1| Radical SAM family enzyme [Bacillus cereus ATCC 14579]
 gi|206733862|gb|EDZ51033.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH1134]
 gi|228637068|gb|EEK93527.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           BDRD-ST24]
 gi|228654377|gb|EEL10242.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           BDRD-Cer4]
 gi|228672111|gb|EEL27402.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock1-15]
 gi|228723798|gb|EEL75153.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           AH676]
 gi|228799596|gb|EEM46549.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 362

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 207/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I   + + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLKTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|319794361|ref|YP_004156001.1| radical SAM protein [Variovorax paradoxus EPS]
 gi|315596824|gb|ADU37890.1| radical SAM enzyme, Cfr family [Variovorax paradoxus EPS]
          Length = 384

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 21/380 (5%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +   +L+    E L     K+G      R R +Q+++WI+ RG  DF  M+D+++ +R  
Sbjct: 1   MTTANLLDFDLEGLAAFCEKLG----EKRFRATQLFRWIHQRGASDFTQMTDLAKSLREK 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L     +    ++ +  S DGT KWL       +G    +E V+IPE  RGTLCVSSQ G
Sbjct: 57  LATTARVEALPVLTQHESKDGTIKWLF-----DVGDGNAVEAVFIPEDDRGTLCVSSQAG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TG Q   RNL+  EI+ Q+  A   L      ++          R ISN+V
Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTGEIVAQLWFAEHFLRKHLKRDE----------RVISNVV 161

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N+  +  +L    D      S+RR+T+STSG VP I R+G +  V +A+SL
Sbjct: 162 MMGMGEPLQNYTALVPALRTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGTDCAVAMAVSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++ LR+ LVP+NRKYP+  L++AC+ Y   +    ITFEY ML G+ND P  A  L+
Sbjct: 222 HAPNDALRDDLVPLNRKYPIAELLEACKRYLEHAPRDFITFEYCMLDGVNDQPEHARQLV 281

Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           ++++   +  K NLIPFNP+P    L S Q  ++ F+  +  +G  + +R  RG DI AA
Sbjct: 282 ELVRKHDVSCKFNLIPFNPFPASGLLRSPQPRVLAFARTLSEAGLVTTVRKTRGDDIDAA 341

Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
           CGQL    K   +   +  Q
Sbjct: 342 CGQLAGDVKDRTRAAERMAQ 361


>gi|261856771|ref|YP_003264054.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2]
 gi|261837240|gb|ACX97007.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2]
          Length = 392

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 155/377 (41%), Positives = 220/377 (58%), Gaps = 24/377 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G+  ++L++  +++G        R +Q+ KW++ R +  F  M+D+++ +R  L
Sbjct: 21  NKINLLGLTPQQLKDWFVELG----EKPFRATQLLKWVHQRRVDSFDDMTDLAKSLRDKL 76

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  P I  ++ S DGTRK+LL        G   +E VYIPE  R TLC+SSQVGC
Sbjct: 77  RDLACIRAPAIRLDQQSSDGTRKFLLEL-----DGGGSVEMVYIPEDDRATLCISSQVGC 131

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C+FC TG Q   RNLT  EI+ Q+ LA  ++               +  R ISN+V 
Sbjct: 132 SLACTFCSTGRQGFNRNLTTAEIVGQLWLAERMID-----------RAVNHNRAISNVVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF++V  + +I  D      S+RR+T+STSG +P I R+ E + V LAISLH
Sbjct: 181 MGMGEPLLNFESVVDAATIMLDDNAYGLSRRRVTISTSGIIPAIDRLAERLPVALAISLH 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR++LVPIN+KYPL+ L+ AC  Y  +     I +EYVML+G+ND P  A  +I+
Sbjct: 241 APNDALRDVLVPINQKYPLDDLMAACDRYAKVVPHGAIIYEYVMLEGVNDEPVHAEEMIR 300

Query: 305 IL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +L  +    K+NLIPFNP+P   Y  S +  I  F   +K +G ++  R  RG DI AAC
Sbjct: 301 LLAPRKDAVKVNLIPFNPFPSSGYKRSSRNRIERFRATLKAAGINTVPRKTRGDDIDAAC 360

Query: 363 GQLKSLSKRIPKVPRQE 379
           GQL    +   K  RQE
Sbjct: 361 GQLVGEFE--DKARRQE 375


>gi|149926356|ref|ZP_01914617.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
 gi|149824719|gb|EDM83933.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
          Length = 379

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 154/371 (41%), Positives = 215/371 (57%), Gaps = 16/371 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+     EL +    +G        R  Q+ KWI+  G+ +F  M+D+++  R  LN  
Sbjct: 7   NLLDYSVPELIQWCGNLG----EKPFRAKQLAKWIHQSGMDNFDSMTDLAKSFRQNLNSR 62

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             I  P I+ + +S DGTRKWL       +G    +ETV+IPE+ RGTLCVSSQ GC++ 
Sbjct: 63  ACIKAPSIISDNVSKDGTRKWLF-----DVGNGDAVETVFIPEERRGTLCVSSQAGCAVN 117

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG Q   RNL+  EI+ Q+  A  LL +        G  + +  R ++N+VMMGM
Sbjct: 118 CRFCSTGKQGFSRNLSTAEIVAQLWKANVLLRE-------AGDRVYAQERPVTNVVMMGM 170

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N+D +  +L +  D      S+RR+T+STSG VP + R+ ++  V LA+SLHA +
Sbjct: 171 GEPLLNYDALVPALQLMLDDTAYGLSRRRVTVSTSGVVPFMDRLSQDCPVALAVSLHAPN 230

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           + LR+ LVP+N+KYPL  L+DAC  Y   +    ITFEYVML G+ND P  A  L++I K
Sbjct: 231 DALRDHLVPLNKKYPLRELLDACLRYLKFAPRDFITFEYVMLDGVNDKPEHAQQLLEIAK 290

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +P K NLIPFNP+P    L S    I TF + +  +G  + +R  RG DI AACGQL  
Sbjct: 291 IVPCKFNLIPFNPFPESGLLKSTSPAIKTFVDILGGAGVVTTVRKTRGDDIDAACGQLAG 350

Query: 368 LSKRIPKVPRQ 378
             +   KV  +
Sbjct: 351 EVRDRTKVKER 361


>gi|254449223|ref|ZP_05062672.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
 gi|198261200|gb|EDY85496.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
          Length = 380

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 151/381 (39%), Positives = 215/381 (56%), Gaps = 22/381 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M+   K +L+ +  E+L+      G        R +Q+ KWI+ R + DF  M+D+S+ +
Sbjct: 1   MSDTAKINLLDLNFEQLKAFFSDRG----EKAFRATQVTKWIHHRCVDDFDEMTDLSKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG------PVEIETVYIPEKSRG 114
           R +L +   +  PE+V E+ S DGTRKW+L    +            ++E V+IPE  RG
Sbjct: 57  REMLKRDAEVRAPEVVLEQKSADGTRKWVLDLDNQATASRTTPAIGNKVEMVFIPEDGRG 116

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           TLCVSSQVGCSL CSFC T  Q   RNL+  EI+ QV  A+  L +              
Sbjct: 117 TLCVSSQVGCSLDCSFCSTARQGFSRNLSVAEIIGQVWQAKRTLLEL------------G 164

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
              +++N+VMMGMGEPL N+  V ++++   D MG   SKR++T+STSG VP + R+ E+
Sbjct: 165 EDERLTNVVMMGMGEPLMNYRPVIQAVNTMMDDMGYGLSKRKVTISTSGMVPAMERMIED 224

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               LA+SLHA ++ LR+ LVPIN+K+PL  L+  C  +      R +T+EYVML+G+ND
Sbjct: 225 TQCALAVSLHAPNDSLRDELVPINKKHPLNELMGVCDRWVEAGPKRNVTYEYVMLEGVND 284

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           +   A  L K+LK   AK+NLIPFNP+P   Y  S +  I  F   +   G  +  R  R
Sbjct: 285 NREQAHELGKLLKAREAKVNLIPFNPFPNSGYKRSSEARIKEFKRILNSYGVFTFPRKTR 344

Query: 355 GLDILAACGQLKSLSKRIPKV 375
           G DI AACGQL    +   + 
Sbjct: 345 GDDIDAACGQLVGKVQDRSRR 365


>gi|114320405|ref|YP_742088.1| radical SAM protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|122941195|sp|Q0A989|RLMN_ALHEH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|114226799|gb|ABI56598.1| 23S rRNA m(2)A-2503 methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 360

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 158/381 (41%), Positives = 227/381 (59%), Gaps = 27/381 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+ + R+ L+     +G        R +Q+ KW++ R +  F+ M+DIS+ +R  L + 
Sbjct: 2   NLLDLDRQALKRLFADLG----EKPFRATQVLKWVHQRRVTGFEEMTDISKALRARLAER 57

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            ++  PE++ E++S DGTRKWLLR     + G   IETV+IP+  RGTLCVSSQVGC+L 
Sbjct: 58  VALRLPEVLAEQVSEDGTRKWLLR-----VDGGQAIETVFIPDSGRGTLCVSSQVGCALD 112

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC T  Q   RNL+  EI+ Q  +A                 +   G +I+N+V MGM
Sbjct: 113 CSFCSTAQQGFNRNLSTAEIIGQYYVAYDQ--------------LTGTGEQITNVVFMGM 158

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N + V  ++ + +D      SKR++T+STSG V  + R+ E+  V LA+SLHA +
Sbjct: 159 GEPLLNLEAVIPAVRLMTDDDAYGLSKRKVTISTSGVVTMLERMREQTDVSLAVSLHAPN 218

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           N LR+ LVPINRK+PLE LI AC  Y      RRIT+EYVML G+ND    A  L ++L 
Sbjct: 219 NALRDELVPINRKHPLERLIPACAAYIADKPHRRITWEYVMLDGVNDQDHHAHELARLLG 278

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            IP+K+NLIPFNP+PG  Y CS +  I+ F   ++  G ++  R  RG DI  ACGQL  
Sbjct: 279 DIPSKVNLIPFNPFPGARYRCSPRGRILRFVRILQSHGLTATTRVTRGQDIDGACGQLVG 338

Query: 368 L----SKRIPKVPRQEMQITG 384
                ++R  ++ ++E++  G
Sbjct: 339 KVQDRTRRQQRLVQRELRREG 359


>gi|260771398|ref|ZP_05880323.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii
           CIP 102972]
 gi|260613524|gb|EEX38718.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii
           CIP 102972]
 gi|315180979|gb|ADT87893.1| predicted Fe-S-cluster redox enzyme [Vibrio furnissii NCTC 11218]
          Length = 373

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 145/385 (37%), Positives = 206/385 (53%), Gaps = 22/385 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ L                R  QI KWIY  G  DF  M++I++++R 
Sbjct: 2   TTEKVNLLDFDRKGLRAYFAD---ELGEKAFRADQIMKWIYHFGCDDFDKMTNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L +   I  P + + + S DGT KW +R          ++ETVYIPE  R TLCVSSQV
Sbjct: 59  QLKERCEIRAPYVSEAQHSSDGTIKWAMRVGD------QDVETVYIPEDDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDTLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++K  P KINLIPFNP+PG  Y       I  F + + +  ++  +R  RG DI A
Sbjct: 283 ELAQLMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYDHTVTVRKTRGDDIDA 342

Query: 361 ACGQL-KSLSKRIPKVPRQEMQITG 384
           ACGQL   +  R  +   ++     
Sbjct: 343 ACGQLVGDVIDRTKRTKMKQADENA 367


>gi|113461341|ref|YP_719410.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus
           129PT]
 gi|112823384|gb|ABI25473.1| 23S rRNA m(2)A-2503 methyltransferase [Haemophilus somnus 129PT]
          Length = 365

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 154/373 (41%), Positives = 215/373 (57%), Gaps = 23/373 (6%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           + + R+++     ++G        R  Q+ KWIY  G  +F  M++I++++R  L     
Sbjct: 1   MNLTRQQMRAFFQELG----EKPFRADQLVKWIYHFGEDNFDHMTNINKKLREKLKTVAE 56

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           I  PEI  E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+L C+
Sbjct: 57  IKAPEIAVEQRSADGTIKWAMQVGD------QQVETVYIPETDRATLCVSSQVGCALACT 110

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VMMGMGE
Sbjct: 111 FCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVMMGMGE 160

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249
           PL N  NV  ++ I  D      SKRR+TLSTSG VP + ++ E I V LAISLHA +++
Sbjct: 161 PLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDE 220

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILK 307
           LRN +VPIN+KY ++ML+++   Y  +SNA   ++T EYVML  IND    A  L ++LK
Sbjct: 221 LRNEIVPINKKYNIKMLMESVNRYLNVSNANHGKVTIEYVMLDHINDGTEHAHQLAEVLK 280

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             P KINLIP+NP+P   Y  S    I  F + +   G++  +R  RG DI AACGQL  
Sbjct: 281 NTPCKINLIPWNPFPDAPYAKSSNTRIDRFQKTLMEYGFTVILRKTRGDDIDAACGQLAG 340

Query: 368 LS-KRIPKVPRQE 379
               R  +  +++
Sbjct: 341 DVIDRTKRTAQKK 353


>gi|262165069|ref|ZP_06032806.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
           VM223]
 gi|262172172|ref|ZP_06039850.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
           MB-451]
 gi|261893248|gb|EEY39234.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
           MB-451]
 gi|262024785|gb|EEY43453.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
           VM223]
          Length = 373

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 146/386 (37%), Positives = 209/386 (54%), Gaps = 27/386 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ L     +          R  Q+ KWIY  G  DF  M++I++++R 
Sbjct: 2   TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW +R          ++ETVYIPE+ R TLCVSSQV
Sbjct: 59  KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA +++LR+ ++PIN ++ ++  +   R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++KG P KINLIPFNP+PG  Y       I  F + + +  ++  IR  RG DI A
Sbjct: 283 ELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342

Query: 361 ACGQL------KSLSKRIPKVPRQEM 380
           ACGQL      ++   +  +   Q +
Sbjct: 343 ACGQLVGDVIDRTKRTKAKQFAEQAI 368


>gi|15640776|ref|NP_230406.1| hypothetical protein VC0757 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591437|ref|ZP_01678715.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153817298|ref|ZP_01969965.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153822713|ref|ZP_01975380.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|153824544|ref|ZP_01977211.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|254847894|ref|ZP_05237244.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744563|ref|ZP_05418514.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera
           CIRS 101]
 gi|262161302|ref|ZP_06030413.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           INDRE 91/1]
 gi|81623203|sp|Q9KTX3|RLMN_VIBCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|9655203|gb|AAF93922.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546714|gb|EAX56891.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126512214|gb|EAZ74808.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126519744|gb|EAZ76967.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|149741762|gb|EDM55791.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|254843599|gb|EET22013.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255737594|gb|EET92988.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera
           CIRS 101]
 gi|262029052|gb|EEY47705.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           INDRE 91/1]
          Length = 373

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 148/380 (38%), Positives = 207/380 (54%), Gaps = 22/380 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ L     +          R  Q+ KWIY  G  DF  M++I++++R 
Sbjct: 2   TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW +R          ++ETVYIPE  R TLCVSSQV
Sbjct: 59  KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEDDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ +E  ++  R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L ++LKG P KINLIPFNP+PG  Y       I  F + + +  ++  IR  RG DI A
Sbjct: 283 ELAELLKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342

Query: 361 ACGQL-KSLSKRIPKVPRQE 379
           ACGQL   +  R  +   ++
Sbjct: 343 ACGQLVGDVIDRTKRTKAKQ 362


>gi|37678948|ref|NP_933557.1| hypothetical protein VV0764 [Vibrio vulnificus YJ016]
 gi|81758246|sp|Q7MNF3|RLMN_VIBVY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|37197690|dbj|BAC93528.1| predicted Fe-S-cluster redox enzyme [Vibrio vulnificus YJ016]
          Length = 374

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 150/379 (39%), Positives = 212/379 (55%), Gaps = 25/379 (6%)

Query: 5   KKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K +L+   R+ L E    ++G        R  Q+ KWIY  G+ DF  M++I++++R  
Sbjct: 4   EKINLLDFDRKGLRELFAQELG----EKAFRADQVMKWIYHFGVDDFDNMTNINKQLREK 59

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q   I+ P + + + S DGT KW +R          ++ETVYIPE+ R TLCVSSQVG
Sbjct: 60  LKQKCEIVAPVVSEAQHSSDGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQVG 113

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+V
Sbjct: 114 CALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREVG----------LEKETGRRPITNVV 163

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAISL
Sbjct: 164 MMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISL 223

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301
           HA ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A  
Sbjct: 224 HAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHE 283

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L +++K  P KINLIPFNP+PG  Y       I  F + + +  ++  IR  RG DI AA
Sbjct: 284 LAQLMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAA 343

Query: 362 CGQLKSLSKRIPKVPRQEM 380
           CGQL      I +  R  M
Sbjct: 344 CGQLVGDV--IDRTKRTAM 360


>gi|311029975|ref|ZP_07708065.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp.
           m3-13]
          Length = 363

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 208/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K S+  +   ELEE LL IG      + RT+QI++W+Y + +  F+ MS++S+ +R  L
Sbjct: 16  RKPSIYSLQLHELEEWLLSIG----EKKFRTTQIFEWLYQKRVTSFEEMSNLSKSLRDKL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + +++   + + ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 72  EETYALTTLKTIVQQTSSDGTMKFLFELHD-----GYSIETVLMKHEYGNSVCVTTQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDEMD--------------ERVSHVVI 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  NFD +   L I +    L+   R IT+STSG +P I +  +E + +  A+SL
Sbjct: 173 MGIGEPFDNFDEMLDFLKIINHDQALNIGARHITVSTSGIIPKIYKFADENMQINFAVSL 232

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PINR Y L  L+++ R+Y   +   R++FEY +  G+ND    A  L 
Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMESIRYYINKTGR-RVSFEYGLFGGVNDQVEHAEELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  +R  +G DI AACG
Sbjct: 292 QLLKGMKCHVNLIPVNYVPERDYVRTPKEQINLFEKTLKNLGVNVTVRREQGHDIDAACG 351

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 352 QLRAKERK 359


>gi|121726066|ref|ZP_01679365.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|153216236|ref|ZP_01950336.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153800552|ref|ZP_01955138.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|153829401|ref|ZP_01982068.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|227080936|ref|YP_002809487.1| hypothetical protein VCM66_0715 [Vibrio cholerae M66-2]
 gi|229513104|ref|ZP_04402570.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           TMA 21]
 gi|229523420|ref|ZP_04412827.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM
           11079-80]
 gi|229525403|ref|ZP_04414808.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           bv. albensis VL426]
 gi|229530113|ref|ZP_04419503.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           12129(1)]
 gi|254225020|ref|ZP_04918634.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|254285475|ref|ZP_04960439.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|262192502|ref|ZP_06050653.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT
           5369-93]
 gi|297581156|ref|ZP_06943080.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298499110|ref|ZP_07008917.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757]
 gi|254807221|sp|C3LT10|RLMN_VIBCM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|121631548|gb|EAX63918.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124114381|gb|EAY33201.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124123841|gb|EAY42584.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|125622407|gb|EAZ50727.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|148875121|gb|EDL73256.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|150424337|gb|EDN16274.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227008824|gb|ACP05036.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|229333887|gb|EEN99373.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           12129(1)]
 gi|229338984|gb|EEO04001.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           bv. albensis VL426]
 gi|229339783|gb|EEO04798.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM
           11079-80]
 gi|229349997|gb|EEO14951.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           TMA 21]
 gi|262031661|gb|EEY50248.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT
           5369-93]
 gi|297534472|gb|EFH73309.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297543443|gb|EFH79493.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757]
 gi|327483542|gb|AEA77949.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           LMA3894-4]
          Length = 373

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 148/380 (38%), Positives = 207/380 (54%), Gaps = 22/380 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ L     +          R  Q+ KWIY  G  DF  M++I++++R 
Sbjct: 2   TTEKVNLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW +R          ++ETVYIPE  R TLCVSSQV
Sbjct: 59  KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEDDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ +E  ++  R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L ++LKG P KINLIPFNP+PG  Y       I  F + + +  ++  IR  RG DI A
Sbjct: 283 ELAELLKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342

Query: 361 ACGQL-KSLSKRIPKVPRQE 379
           ACGQL   +  R  +   ++
Sbjct: 343 ACGQLVGDVIDRTKRTKAKQ 362


>gi|257093692|ref|YP_003167333.1| radical SAM enzyme, Cfr family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046216|gb|ACV35404.1| radical SAM enzyme, Cfr family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 373

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 154/373 (41%), Positives = 211/373 (56%), Gaps = 16/373 (4%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +    L     + G        R  Q+ +W++  G  DF  M+DI++ +R  L  
Sbjct: 3   VNLLDLDAAGLTAFFAECG----EKPFRARQVLRWLHRFGQLDFDAMTDIARSLREKLRA 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              ++ P ++ +++S DGTRK+L       +GG   +E V+IPE  RGTLC+S+Q GC+L
Sbjct: 59  TAQVLPPVVIADRLSDDGTRKFLF-----DVGGGNAVEAVFIPEAERGTLCISTQAGCAL 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC TG Q   RNLT  EI+ Q+  AR  LG +   E   G       R ISN+V+MG
Sbjct: 114 DCSFCSTGKQGFNRNLTVAEIVGQLWQARHSLGAYAAGETAGGE------RVISNVVLMG 167

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N DN   +L +  D      S+RR+T+STSG VP + R+  E  V LA+SLHA 
Sbjct: 168 MGEPLANLDNTVTALRLMLDDNAYGLSRRRVTVSTSGLVPAMDRLRNECPVALAVSLHAP 227

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ LVPINRKYPL  L+ AC  Y   +    +TFEYVML G+NDS   A  L+ + 
Sbjct: 228 NDRLRDELVPINRKYPLHELMSACLRYLEKAPRDFVTFEYVMLAGVNDSDAQAHELLALT 287

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +P K NLIPFNP+PG  Y  S    I  F+E +  +G  +  R  RG DI AACGQL 
Sbjct: 288 RDVPCKFNLIPFNPFPGSPYHRSSAPRIRQFAETLIDAGVVTTTRKTRGDDIDAACGQLA 347

Query: 367 SLS-KRIPKVPRQ 378
                R  +  R+
Sbjct: 348 GQVLDRTQRTGRR 360


>gi|228922618|ref|ZP_04085918.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228954141|ref|ZP_04116169.1| Radical SAM family enzyme [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229071362|ref|ZP_04204585.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           F65185]
 gi|229081119|ref|ZP_04213629.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock4-2]
 gi|229180140|ref|ZP_04307484.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           172560W]
 gi|229192033|ref|ZP_04319003.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           ATCC 10876]
 gi|228591584|gb|EEK49433.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           ATCC 10876]
 gi|228603349|gb|EEK60826.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           172560W]
 gi|228702163|gb|EEL54639.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock4-2]
 gi|228711816|gb|EEL63768.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           F65185]
 gi|228805461|gb|EEM52052.1| Radical SAM family enzyme [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228837047|gb|EEM82388.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 362

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|296504359|ref|YP_003666059.1| radical SAM protein [Bacillus thuringiensis BMB171]
 gi|296325411|gb|ADH08339.1| radical SAM protein [Bacillus thuringiensis BMB171]
          Length = 362

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 207/368 (56%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAVQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I   + + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLKTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|47569490|ref|ZP_00240170.1| radical SAM enzyme, Cfr family [Bacillus cereus G9241]
 gi|47553819|gb|EAL12190.1| radical SAM enzyme, Cfr family [Bacillus cereus G9241]
          Length = 362

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------SEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|229505629|ref|ZP_04395139.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX
           330286]
 gi|229510699|ref|ZP_04400178.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           B33]
 gi|229517821|ref|ZP_04407265.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           RC9]
 gi|229608647|ref|YP_002879295.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           MJ-1236]
 gi|229344536|gb|EEO09510.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           RC9]
 gi|229350664|gb|EEO15605.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           B33]
 gi|229357852|gb|EEO22769.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX
           330286]
 gi|229371302|gb|ACQ61725.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           MJ-1236]
          Length = 377

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 148/380 (38%), Positives = 207/380 (54%), Gaps = 22/380 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ L     +          R  Q+ KWIY  G  DF  M++I++++R 
Sbjct: 6   TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 62

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW +R          ++ETVYIPE  R TLCVSSQV
Sbjct: 63  KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEDDRATLCVSSQV 116

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 117 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 166

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 167 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 226

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ +E  ++  R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 227 LHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 286

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L ++LKG P KINLIPFNP+PG  Y       I  F + + +  ++  IR  RG DI A
Sbjct: 287 ELAELLKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 346

Query: 361 ACGQL-KSLSKRIPKVPRQE 379
           ACGQL   +  R  +   ++
Sbjct: 347 ACGQLVGDVIDRTKRTKAKQ 366


>gi|262402858|ref|ZP_06079419.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586]
 gi|262351640|gb|EEZ00773.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586]
          Length = 373

 Score =  441 bits (1134), Expect = e-122,   Method: Composition-based stats.
 Identities = 146/380 (38%), Positives = 207/380 (54%), Gaps = 22/380 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ L     +          R  Q+ KWIY  G  DF  M++I++++R 
Sbjct: 2   TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P +   + S DGT KW +R          ++ETVYIPE+ R TLCVSSQV
Sbjct: 59  KLKAKCEIRAPYVSAAQHSADGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA +++LR+ ++PIN ++ ++  +   R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++KG P KINLIPFNP+PG  Y       I  F + + +  ++  IR  RG DI A
Sbjct: 283 ELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342

Query: 361 ACGQL-KSLSKRIPKVPRQE 379
           ACGQL   +  R  +   ++
Sbjct: 343 ACGQLVGDVIDRTKRTKAKQ 362


>gi|90408602|ref|ZP_01216757.1| hypothetical protein PCNPT3_04766 [Psychromonas sp. CNPT3]
 gi|90310294|gb|EAS38424.1| hypothetical protein PCNPT3_04766 [Psychromonas sp. CNPT3]
          Length = 372

 Score =  441 bits (1134), Expect = e-122,   Method: Composition-based stats.
 Identities = 156/380 (41%), Positives = 217/380 (57%), Gaps = 23/380 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            +KK +L+ + RE L    + +G        R  Q+ KWIY  G  DF  MS+I++++R 
Sbjct: 2   SIKKVNLLNLNREGLRAFFVDMG----EKAFRAEQVMKWIYHYGCDDFSEMSNINKKLRE 57

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I+ PE+  E+ S DGT KW+++          +IETVYIPEK R TLCVSSQV
Sbjct: 58  KLTLCAEIVAPEVRVEQRSKDGTIKWVMKVGD------QDIETVYIPEKDRATLCVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C+FC T  Q   RNLT  EI+ QV  A  ++G          ++  S  R I+N+
Sbjct: 112 GCALACNFCSTAQQGFNRNLTVSEIIGQVWRAAKIVG----------VMGESGKRPITNV 161

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N +NV  ++ +  D  G + SKRR+T+STSG VP +  +G+ I V LAIS
Sbjct: 162 VMMGMGEPLLNLNNVIPAMELMLDDFGYALSKRRVTISTSGVVPALDILGDRIDVALAIS 221

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA +++LR+ ++PIN KY +   +   + Y   S A R  +T EY++L   NDS   A 
Sbjct: 222 LHASNDELRSQMMPINDKYNIADFLAGVKRYIAKSKANRGKVTIEYLLLDHFNDSTDQAH 281

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L  +LK  P KINLIPFNP+P   Y       +  F++ +   GY+  +R  RG DI A
Sbjct: 282 ELAILLKDTPCKINLIPFNPFPDNSYKKPSNSRVDRFNKVLMEYGYTVIVRKTRGDDIDA 341

Query: 361 ACGQL-KSLSKRIPKVPRQE 379
           ACGQL   +  R  +  R+ 
Sbjct: 342 ACGQLVGDVIDRTKRTMRKR 361


>gi|257084807|ref|ZP_05579168.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256992837|gb|EEU80139.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
          Length = 357

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 217/379 (57%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+I + +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNIPKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    +              +  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N  R+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVENQ 357


>gi|300312259|ref|YP_003776351.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1]
 gi|300075044|gb|ADJ64443.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 152/379 (40%), Positives = 217/379 (57%), Gaps = 19/379 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ M   +L     ++G        R  Q+ +WI+  G+ DF  M+D+++ +R  L  
Sbjct: 6   TNLLDMDPAQLVAYCGELG----EKPFRAKQLQRWIHQFGVADFDQMTDLAKSLRDKLKT 61

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +  P I+ +  S DGTRKWL+      +G    +ETV+IPE++RGTLCVS+Q GC++
Sbjct: 62  RAEVRAPAIISDHTSTDGTRKWLV-----DVGQGNAVETVFIPEENRGTLCVSTQAGCAV 116

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL+  EI+ Q+ +A   L    G E       P   R+I+N+VMMG
Sbjct: 117 NCRFCSTGKQGFNRNLSVAEIIGQLWMAEFELRKTKGIE-----GGPKGERQITNVVMMG 171

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+    +L +  D      S+RR+TLSTSG VP I ++ +E  V LA+SLHA 
Sbjct: 172 MGEPLLNFEPTVTALRLMLDDNAYGLSRRRVTLSTSGVVPMIGKLSQECPVALAVSLHAS 231

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ L+P+NRK+PL  L+ AC+ Y   +    ITFEY ML G+ND+   A  L+ ++
Sbjct: 232 NDALRDSLIPLNRKHPLRELMLACKRYLEFAPRDFITFEYCMLDGVNDTDTHARELVALV 291

Query: 307 K----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           K     IP K NLIPFNP+P      S    I  F++ +  +G  + IR  RG DI AAC
Sbjct: 292 KEGETAIPCKFNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAAC 351

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL    K   +V ++ MQ
Sbjct: 352 GQLAGEVKDRTRV-QERMQ 369


>gi|261212143|ref|ZP_05926429.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
 gi|260838751|gb|EEX65402.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
          Length = 373

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 146/380 (38%), Positives = 207/380 (54%), Gaps = 22/380 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ L     +          R  Q+ KWIY  G  DF  M++I++++R 
Sbjct: 2   TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P +   + S DGT KW +R          ++ETVYIPE+ R TLCVSSQV
Sbjct: 59  KLKAKCEIRAPYVSAAQHSADGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA +++LR+ ++PIN ++ ++  +   R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++KG P KINLIPFNP+PG  Y       I  F + + +  ++  IR  RG DI A
Sbjct: 283 ELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342

Query: 361 ACGQL-KSLSKRIPKVPRQE 379
           ACGQL   +  R  +   ++
Sbjct: 343 ACGQLVGDVIDRTKRTKTKQ 362


>gi|229086417|ref|ZP_04218593.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock3-44]
 gi|228696933|gb|EEL49742.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock3-44]
          Length = 362

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E++E L + G P    + R  QI+ W+Y + +++++ M+++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQEWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMTNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   G+    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMAFLRIVNHEKGIHIGARHMTVSTSGIIPKIYKFAEEDMQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + +LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAPNTELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 QLLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|320157276|ref|YP_004189655.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
           MO6-24/O]
 gi|326423711|ref|NP_759425.2| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
           CMCP6]
 gi|319932588|gb|ADV87452.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
           MO6-24/O]
 gi|319999069|gb|AAO08952.2| Ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
           CMCP6]
          Length = 374

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 149/379 (39%), Positives = 212/379 (55%), Gaps = 25/379 (6%)

Query: 5   KKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K +L+   R+ + E    ++G        R  Q+ KWIY  G+ DF  M++I++++R  
Sbjct: 4   EKINLLDFDRKGMRELFAQELG----EKAFRADQVMKWIYHFGVDDFDNMTNINKQLREK 59

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q   I+ P + + + S DGT KW +R          ++ETVYIPE+ R TLCVSSQVG
Sbjct: 60  LKQKCEIVAPVVSEAQHSSDGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQVG 113

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+V
Sbjct: 114 CALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREVG----------LEKETGRRPITNVV 163

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAISL
Sbjct: 164 MMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISL 223

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301
           HA ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A  
Sbjct: 224 HAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHE 283

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L +++K  P KINLIPFNP+PG  Y       I  F + + +  ++  IR  RG DI AA
Sbjct: 284 LAQLMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAA 343

Query: 362 CGQLKSLSKRIPKVPRQEM 380
           CGQL      I +  R  M
Sbjct: 344 CGQLVGDV--IDRTKRTAM 360


>gi|88812659|ref|ZP_01127906.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
 gi|88790075|gb|EAR21195.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
          Length = 378

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 159/360 (44%), Positives = 219/360 (60%), Gaps = 21/360 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+   R+ L+E L ++G P      R  Q+ KWI+ R + DF  M+D+ + +R  L 
Sbjct: 17  KANLLNFDRQALQEWLAQLGEPP----FRAVQLIKWIHQRRVFDFDRMTDLGKPLRARLA 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P  V ++ S DG RKWLL        G   IETV+IPE  RGTLCVSSQ+GC 
Sbjct: 73  EIAEIRLPSAVFDRTSADGVRKWLLTL-----DGDNAIETVFIPEPGRGTLCVSSQLGCP 127

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG Q   RNLTA EI+ Q+L               + +    V  +++N+V M
Sbjct: 128 LACTFCSTGQQGFNRNLTAAEIVGQLLFV------------TQALAADGVAGRVTNVVFM 175

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF +V K+ ++  D    + S+RR+TLSTSG VP + R+ E   + LA+SLHA
Sbjct: 176 GMGEPLANFASVLKASNLMVDEHAYNLSRRRVTLSTSGIVPALYRLAEVSRISLAVSLHA 235

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             + LR+ LVPINRKYP+  L+ ACR+Y   +   RIT+EYVML  +ND+   A  L ++
Sbjct: 236 PDDALRDELVPINRKYPIAELLAACRNYVECTPHHRITWEYVMLDAVNDTDGHAQALARL 295

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+P+KINLIPFN +PG  Y  S  + +  F+E ++R+GY + +R  RG DI  ACGQL
Sbjct: 296 LKGVPSKINLIPFNAFPGAPYRSSPPQRVARFTEILQRAGYITTVRKTRGDDIDGACGQL 355


>gi|167627914|ref|YP_001678414.1| radical SAM superfamily protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|205829762|sp|B0U083|RLMN_FRAP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|167597915|gb|ABZ87913.1| radical SAM superfamily protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 370

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 157/382 (41%), Positives = 232/382 (60%), Gaps = 22/382 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G+ ++ +E+  + IG      +    Q++KWI+ +G+ DF  M+D+ + +R+ L
Sbjct: 4   DKINLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDSMTDLGKNLRNKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            ++  I+ P++V  K S DGT KWL+        G   +ETV+IPE+ RGTLCVSSQVGC
Sbjct: 60  KENAEIVIPKVVFNKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG Q   RNL++ E++ Q+ +A   L    G  D            ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSSAEVISQLWIAARTLSKNNGEHDFS----------VTNIVM 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  LI+
Sbjct: 224 APTDSLRNEIVPINKKYNIDELLEACKLYAEKGPHKHITFEYTLMEEVNDNLSDAEQLIE 283

Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +L+    PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AAC
Sbjct: 284 LLRSREVPAKINLIPFNPYPGTPYRKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL        K   + ++  G
Sbjct: 344 GQLAGDVMDKTKRKERYLKKLG 365


>gi|152980879|ref|YP_001353820.1| hypothetical protein mma_2130 [Janthinobacterium sp. Marseille]
 gi|205829777|sp|A6SZX3|RLMN_JANMA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|151280956|gb|ABR89366.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 387

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 143/380 (37%), Positives = 215/380 (56%), Gaps = 18/380 (4%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  L   +L+ +   +L     ++G        R  Q+ +WI+  G  DF  M+D+++ +
Sbjct: 1   MTTL--TNLLDLDPAQLIAYCGELG----EKPFRAKQLQRWIHQFGASDFDAMTDLAKSL 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L     I  P ++ +  S DGTRKWL+      +G    +ETV+IPE++RGTLC+S+
Sbjct: 55  RDKLATRAIIAAPAVISDHTSADGTRKWLV-----DVGQGNAVETVFIPEENRGTLCIST 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  E++ Q+ +A     +F           P   R+I+
Sbjct: 110 QAGCAVNCRFCSTGKQGFNRNLSVGEVIGQLWMA-----EFELRRTKGIEPGPKGERQIT 164

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N++    +L +  D      S+RR+TLSTSG VP I ++ ++  V LA
Sbjct: 165 NVVMMGMGEPLLNYEPTVTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALA 224

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL  L+ AC+ Y   +    +TFEY ML G+NDS + A 
Sbjct: 225 VSLHASNDALRDGLVPLNKKYPLVELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDQHAR 284

Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
            LI +++   +P K NLIPFNP+P      S    I  F++ +  +G  + +R  RG DI
Sbjct: 285 ELIALVRQADVPCKFNLIPFNPFPESGLTRSHNPRIKAFAQVLMDAGIVTTVRKTRGDDI 344

Query: 359 LAACGQLKSLSKRIPKVPRQ 378
            AACGQL    +   +V  +
Sbjct: 345 DAACGQLAGEVQDRTRVQDR 364


>gi|319892212|ref|YP_004149087.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161908|gb|ADV05451.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464690|gb|ADX76843.1| radical SAM enzyme, Cfr family [Staphylococcus pseudintermedius
           ED99]
          Length = 364

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 205/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+S+  +  +EL+  L + G        R  QI++W+Y + +  F+ M+++S+ +R LL
Sbjct: 17  EKQSIYSLRFDELQGWLKENG----QQSFRAKQIYEWLYDKRVDSFEEMTNLSKALRQLL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             HF+I     V  + S DGT K+L             IETV +      ++CV++QVGC
Sbjct: 73  ADHFTITTLATVVRQESRDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +  L +                 ++S+IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSSIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG VP I    +E + +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLKIVNDDHSLNIGARHITVSTSGIVPRIYDFADESLQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N++R+ L+PINR Y ++ L++A ++Y   +   RITFEY +  G+ND    A  L 
Sbjct: 234 HAANNEIRSKLMPINRAYDVDKLMEAIQYYQEKTKR-RITFEYGLFGGVNDQLEHARELA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K++K +   +NLIP N  P   Y+ + + DI  F + +K+ G ++ IR  +G DI AACG
Sbjct: 293 KLIKPLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKKLGINATIRREQGADIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  ++  
Sbjct: 353 QLRAKERQAE 362


>gi|241668466|ref|ZP_04756044.1| radical SAM superfamily protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877000|ref|ZP_05249710.1| radical SAM family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843021|gb|EET21435.1| radical SAM family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 370

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 156/382 (40%), Positives = 232/382 (60%), Gaps = 22/382 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G+ ++ +E+  + IG      +    Q++KWI+ +G+ DF  M+D+ + +R+ L
Sbjct: 4   DKINLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDSMTDLGKNLRNKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            ++  I+ P++V  K S DGT KWL+        G   +ETV+IPE+ RGTLCVSSQVGC
Sbjct: 60  RENAEIVIPKVVFNKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG Q   RNL++ E++ Q+ +A   L    G  D            ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSSAEVISQLWIAARTLSKNNGEHDFS----------VTNIVM 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L++
Sbjct: 224 APTDSLRNEIVPINKKYNIDELLEACKLYAEKGPHKHITFEYTLMEEVNDNLSDAEQLVE 283

Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +L+    PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AAC
Sbjct: 284 LLRSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL        K   + ++  G
Sbjct: 344 GQLAGDVMDKTKRKERYLKKLG 365


>gi|258545517|ref|ZP_05705751.1| Cfr family radical SAM enzyme [Cardiobacterium hominis ATCC 15826]
 gi|258519217|gb|EEV88076.1| Cfr family radical SAM enzyme [Cardiobacterium hominis ATCC 15826]
          Length = 367

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 160/382 (41%), Positives = 218/382 (57%), Gaps = 24/382 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L  + RE +    +  G        R  Q+ KWIY   + DF  M+D+S+ +R  L
Sbjct: 3   DKINLFDLDREAMTAWFIDNG----EKPFRAKQLLKWIYHERVTDFDAMTDLSKPLREKL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                + +P I+ +K + DGTRKW+ R+          IE V+IPE  RGTLC+SSQ GC
Sbjct: 59  KNIAELRFPTIIADKTASDGTRKWIFRYDC-----GNSIEAVFIPEDDRGTLCISSQAGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC TG     RNLT  EI++QV LA+          DI         R ++N+V+
Sbjct: 114 ALACPFCSTGHAGFNRNLTTGEIIVQVWLAK----------DILNCDRHGNNRVVTNVVL 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV  +  +  D      SKRR+TLSTSG VP I  + E   + LA+SLH
Sbjct: 164 MGMGEPLVNFNNVLPATRLMMDDHAFGLSKRRVTLSTSGIVPAIHALREVTDLSLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303
           A +++LRN +VP+N +Y L  L+DAC  Y   +     +T+EYVML+ +NDS   A  L 
Sbjct: 224 APNDELRNQIVPVNARYGLAALLDACHQYVRHNGQHGGVTWEYVMLRDVNDSLEHARQLA 283

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L+GIP KINLIPFN +PG  Y CS + DI+ F   +  +GY + IR  RG DI AACG
Sbjct: 284 ELLRGIPGKINLIPFNAFPGSRYQCSRRSDILAFQRYLTENGYVATIRKTRGEDIDAACG 343

Query: 364 QLKSLSK----RIPKVPRQEMQ 381
           QL    K    R  K  R+E++
Sbjct: 344 QLVGQFKDRLIRERKQTRKEVE 365


>gi|311068096|ref|YP_003973019.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           atrophaeus 1942]
 gi|310868613|gb|ADP32088.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           atrophaeus 1942]
          Length = 363

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 119/368 (32%), Positives = 200/368 (54%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +  S+     +EL+  L + G        R +QI++W+Y + +  F+ M+++S+ +R  L
Sbjct: 16  ENPSIYSFELDELQTWLTENG----EKPFRAAQIFEWLYEKRVSSFEDMTNLSKSLREKL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + HF +   +   ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 72  SSHFVLTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  NF+ +   L I +   GL+   R IT+STSG +P I    ++ + +  AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYDFADQQMQINFAISL 232

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PIN+ Y L  L++A ++Y   +   RI+FEY +  G+ND    A  L 
Sbjct: 233 HAPNTEIRSRLMPINKAYKLPELMEAVKYYIEKTGR-RISFEYGLFGGVNDQVEHAEELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + +  I  F + +K  G +  IR  +G DI AACG
Sbjct: 292 ALLKGVKCHVNLIPVNYVPERDYVRTPKDQIFAFEKTLKSHGVNVTIRREQGHDIDAACG 351

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 352 QLRAKERQ 359


>gi|325919431|ref|ZP_08181457.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas gardneri ATCC
           19865]
 gi|325550097|gb|EGD20925.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas gardneri ATCC
           19865]
          Length = 401

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/385 (42%), Positives = 226/385 (58%), Gaps = 28/385 (7%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            L+K++L+ + RE LE             R R  Q+ KWI+ R + DF  M+D+ + +R 
Sbjct: 19  ELRKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRA 75

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L+QH  ++ P +V +K S DGT KWLL        G   IETVYIP+K RGTLCVSSQV
Sbjct: 76  KLHQHAEVLVPTVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQV 132

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+
Sbjct: 133 GCGLNCTFCSTATQGFNRNLTTAEIVGQVWVAARHLGN-----------VPHQQRRLTNV 181

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+S
Sbjct: 182 VMMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALN 301
           LHA ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  
Sbjct: 242 LHAANDALRESLVPLNKKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQ 301

Query: 302 LIKILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           L ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  
Sbjct: 302 LARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRT 361

Query: 354 RGLDILAACGQLKSLSKRIPKVPRQ 378
           RG DI AACGQLK     + +  RQ
Sbjct: 362 RGDDIDAACGQLKGQV--MDRTRRQ 384


>gi|228992592|ref|ZP_04152519.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
           pseudomycoides DSM 12442]
 gi|228998640|ref|ZP_04158227.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides
           Rock3-17]
 gi|229006141|ref|ZP_04163828.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides
           Rock1-4]
 gi|228755094|gb|EEM04452.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides
           Rock1-4]
 gi|228761108|gb|EEM10067.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides
           Rock3-17]
 gi|228767226|gb|EEM15862.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
           pseudomycoides DSM 12442]
          Length = 362

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 205/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E++  L + G P    + R  QI+ W+Y + +++++ M+++S+ +R  L
Sbjct: 15  KKTSIYSLQLHEMQNWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMTNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TDERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   G+    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIINHEKGIHIGARHMTVSTSGIIPKIYKFAEEDMQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + +LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAPNTELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 QLLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|121998570|ref|YP_001003357.1| radical SAM protein [Halorhodospira halophila SL1]
 gi|205829772|sp|A1WXZ3|RLMN_HALHL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|121589975|gb|ABM62555.1| 23S rRNA m(2)A-2503 methyltransferase [Halorhodospira halophila
           SL1]
          Length = 359

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 160/371 (43%), Positives = 215/371 (57%), Gaps = 27/371 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G+ R  L      +G      R R  QI +W++ R + DF  M+D+S+ +R  L +H 
Sbjct: 12  LLGLDRPRLAAFFDTLG----EKRFRARQIMQWLHQRHVYDFDEMTDLSKALRQRLREHA 67

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            +  PE+  ++ + DGTRKW++R           +E VYIPE  RGTLC+SSQ GC + C
Sbjct: 68  RVGLPEVAADQQASDGTRKWVVRL-----ADGNCVEAVYIPEPKRGTLCISSQAGCPMGC 122

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
           +FC TG     RNLTA EI+ QV +AR  L +                  I+NIV MGMG
Sbjct: 123 TFCATGEGGFSRNLTAAEIVGQVHVARQHLPEGA----------------ITNIVFMGMG 166

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EPL NFD V  +  + +D  G   SKRR+T+STSG V  I R+     V LA+SLHA +N
Sbjct: 167 EPLLNFDPVISASRVFTDDYGFVLSKRRVTISTSGVVHAIERMQRVTDVSLAVSLHAPNN 226

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           +LRN LVP+NRK PLE L+ AC  Y      RRIT+EYVML G+ND    A  L++ L+G
Sbjct: 227 ELRNQLVPLNRKNPLERLLPACHAYIAEKPHRRITWEYVMLDGVNDQDEHARELLQRLRG 286

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           IP+K+NLIPFNP+PG  Y  +  + +  F++ +   G ++ IR  RG DI  ACGQL   
Sbjct: 287 IPSKVNLIPFNPYPGARYGRTPDRQVRRFADRLLEHGLTATIRETRGDDIDGACGQLVGE 346

Query: 369 SK--RIPKVPR 377
            +  R  KV R
Sbjct: 347 IRDARASKVAR 357


>gi|319649619|ref|ZP_08003775.1| hypothetical protein HMPREF1013_00379 [Bacillus sp. 2_A_57_CT2]
 gi|317398781|gb|EFV79463.1| hypothetical protein HMPREF1013_00379 [Bacillus sp. 2_A_57_CT2]
          Length = 361

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 201/368 (54%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K S+  +   EL++ L +          R  QI+ W+Y + I  F+ M+++S+ +R  L
Sbjct: 14  QKPSIYTLQLNELKDWLKEN----NEKAFRAEQIFDWLYTKRITSFEDMTNLSKGLRDTL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + +FS+   + + ++ S DGT K+L             IETV +      ++CV++QVGC
Sbjct: 70  SANFSLTTLKTIIQQESADGTIKFLFELHD-----GYSIETVLMRHDYGNSVCVTTQVGC 124

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 125 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDE--------------TDERVSSVVI 170

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D++   L I +   GL+   R IT+STSG +P I +  +E + +  AISL
Sbjct: 171 MGIGEPFDNYDSMLSFLKIINHDKGLNIGARHITVSTSGIIPKIYKFADENMQINFAISL 230

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PINR Y L  L+D+ R+Y   +   R++FEY +  G+ND    A  L 
Sbjct: 231 HAPNTEIRSRLMPINRAYKLPDLMDSIRYYINKTGR-RVSFEYGLFGGVNDQVEHAEELA 289

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K++K +   +NLIP N  P  +Y+ + +  I  F + +K  G +  IR   G DI AACG
Sbjct: 290 KLIKNVKCHVNLIPVNYVPERDYVRTPKDQIFAFEKTLKNHGINVTIRREHGHDIDAACG 349

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 350 QLRAKERK 357


>gi|294666609|ref|ZP_06731848.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603629|gb|EFF47041.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 405

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE             R R  Q+ KWI+ R + DF  M+D+ + +R  L
Sbjct: 25  RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKL 81

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +QH  ++ P +V +K S DGT KWLL        G   IETVYIP+K RGTLCVSSQVGC
Sbjct: 82  HQHAEVLVPNVVFDKPSSDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 138

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 139 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 187

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 188 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 247

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  L 
Sbjct: 248 AANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 307

Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  RG
Sbjct: 308 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 367

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 368 DDIDAACGQLKGQV--MDRTRRQ 388


>gi|188991676|ref|YP_001903686.1| Radical SAM superfamily protein, probable [Xanthomonas campestris
           pv. campestris str. B100]
 gi|205829934|sp|B0RT51|RLMN_XANCB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|167733436|emb|CAP51637.1| Radical SAM superfamily protein, probable [Xanthomonas campestris
           pv. campestris]
          Length = 401

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/385 (42%), Positives = 225/385 (58%), Gaps = 28/385 (7%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            + K++L+ + RE LE             R R  Q+ KWI+ R + DF  M+D+ + +R 
Sbjct: 19  TVHKQNLLDLDREGLEHFFAD---TLGEARYRAHQMMKWIHHRYVTDFDQMTDLGKALRA 75

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L+QH  ++ P +V +K S DGT KWLL        G   IETVYIP+K RGTLCVSSQV
Sbjct: 76  KLHQHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQV 132

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+
Sbjct: 133 GCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNV 181

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+S
Sbjct: 182 VMMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLATESDVSLAVS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALN 301
           LHA ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  
Sbjct: 242 LHAANDALRESLVPLNKKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQ 301

Query: 302 LIKILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           L ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  
Sbjct: 302 LARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRT 361

Query: 354 RGLDILAACGQLKSLSKRIPKVPRQ 378
           RG DI AACGQLK     + +  RQ
Sbjct: 362 RGDDIDAACGQLKGQV--MDRTRRQ 384


>gi|331005925|ref|ZP_08329273.1| transcriptional regulator, Crp/Fnr family [gamma proteobacterium
           IMCC1989]
 gi|330420281|gb|EGG94599.1| transcriptional regulator, Crp/Fnr family [gamma proteobacterium
           IMCC1989]
          Length = 403

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 157/378 (41%), Positives = 220/378 (58%), Gaps = 21/378 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+G+   +L      IG      + R  Q+ KWI+  G+ DF  MS+IS+ +R  L
Sbjct: 18  EKINLLGLSTSKLTAFFESIG----EKKFRAIQVQKWIHQNGVDDFSAMSNISKPLREKL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++   I  PE++ +  S DGTRK+L++     +     +ETV+IP+  RGTLCVSSQVGC
Sbjct: 74  SRIAEIRAPEVIKQLDSVDGTRKFLIKVSGDNV-----VETVFIPDGDRGTLCVSSQVGC 128

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q   R+LTA EI+ QV +A    G             P   R ++N+VM
Sbjct: 129 SLDCSFCATGKQGFNRDLTAAEIIGQVWIAAKSYGQLD----------PKADRTVTNVVM 178

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  S+++  D      SKRR+TLSTSG VP + R+GE   V LA+SLH
Sbjct: 179 MGMGEPLLNFDNVVDSMNLMMDDNAYGLSKRRVTLSTSGVVPALDRLGEHCDVSLAVSLH 238

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRDALNL 302
           A ++ LRN LVPIN+KYP+ +L+ + + Y      N R++T EY ++  +ND P  A  L
Sbjct: 239 APNDALRNELVPINKKYPIAVLLASAKRYIDGLPDNRRKMTIEYTLIDQVNDRPHHAYEL 298

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++L+ IP KINLIPFNP+    Y       +  F   +   G+++ +RT RG DI AAC
Sbjct: 299 AELLREIPVKINLIPFNPFDLVNYKRVSNNALRNFQNILINEGFTTTVRTTRGDDIDAAC 358

Query: 363 GQLKSLSKRIPKVPRQEM 380
           GQL      +     + +
Sbjct: 359 GQLAGDINDLTSRSARHL 376


>gi|229162800|ref|ZP_04290757.1| Radical SAM family enzyme [Bacillus cereus R309803]
 gi|228620682|gb|EEK77551.1| Radical SAM family enzyme [Bacillus cereus R309803]
          Length = 362

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TSERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|229098333|ref|ZP_04229280.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock3-29]
 gi|229104426|ref|ZP_04235095.1| Radical SAM family enzyme [Bacillus cereus Rock3-28]
 gi|229117350|ref|ZP_04246728.1| Radical SAM family enzyme [Bacillus cereus Rock1-3]
 gi|228666250|gb|EEL21714.1| Radical SAM family enzyme [Bacillus cereus Rock1-3]
 gi|228679124|gb|EEL33332.1| Radical SAM family enzyme [Bacillus cereus Rock3-28]
 gi|228685231|gb|EEL39162.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           Rock3-29]
          Length = 362

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEELQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|205829947|sp|Q8PKZ1|RLMN_XANAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 401

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE             R R  Q+ KWI+ R + DF  M+D+ + +R  L
Sbjct: 21  RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKL 77

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +QH  ++ P +V +K S DGT KWLL        G   IETVYIP+K RGTLCVSSQVGC
Sbjct: 78  HQHAEVLVPNVVFDKPSADGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L CSFC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 135 GLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  L 
Sbjct: 244 AANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 303

Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  RG
Sbjct: 304 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 363

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 364 DDIDAACGQLKGQV--MDRTRRQ 384


>gi|29376559|ref|NP_815713.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecalis V583]
 gi|227520169|ref|ZP_03950218.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104]
 gi|227555397|ref|ZP_03985444.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22]
 gi|229549611|ref|ZP_04438336.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200]
 gi|255972309|ref|ZP_05422895.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255975469|ref|ZP_05426055.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256956502|ref|ZP_05560673.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256961519|ref|ZP_05565690.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256962655|ref|ZP_05566826.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257079424|ref|ZP_05573785.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1]
 gi|257082189|ref|ZP_05576550.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257090325|ref|ZP_05584686.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257416428|ref|ZP_05593422.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257419673|ref|ZP_05596667.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|293382216|ref|ZP_06628158.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712]
 gi|293388635|ref|ZP_06633131.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613]
 gi|294780328|ref|ZP_06745697.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1]
 gi|300860541|ref|ZP_07106628.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD
           Ef11]
 gi|307270284|ref|ZP_07551592.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248]
 gi|307277716|ref|ZP_07558802.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860]
 gi|307287862|ref|ZP_07567895.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109]
 gi|312900861|ref|ZP_07760155.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470]
 gi|312902828|ref|ZP_07762032.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
 gi|312908292|ref|ZP_07767256.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512]
 gi|312951214|ref|ZP_07770116.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102]
 gi|81585123|sp|Q833B6|RLMN_ENTFA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|29344023|gb|AAO81783.1| conserved hypothetical protein TIGR00048 [Enterococcus faecalis
           V583]
 gi|227072382|gb|EEI10345.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104]
 gi|227175440|gb|EEI56412.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22]
 gi|229305276|gb|EEN71272.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200]
 gi|255963327|gb|EET95803.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255968341|gb|EET98963.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256946998|gb|EEU63630.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256952015|gb|EEU68647.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256953151|gb|EEU69783.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256987454|gb|EEU74756.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1]
 gi|256990219|gb|EEU77521.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256999137|gb|EEU85657.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257158256|gb|EEU88216.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|257161501|gb|EEU91461.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|291080400|gb|EFE17764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712]
 gi|291082010|gb|EFE18973.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613]
 gi|294452592|gb|EFG21025.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1]
 gi|300849580|gb|EFK77330.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD
           Ef11]
 gi|306501007|gb|EFM70314.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109]
 gi|306505595|gb|EFM74779.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860]
 gi|306513338|gb|EFM81962.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248]
 gi|310625706|gb|EFQ08989.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512]
 gi|310630748|gb|EFQ14031.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102]
 gi|310633882|gb|EFQ17165.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
 gi|311291960|gb|EFQ70516.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470]
 gi|315031044|gb|EFT42976.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0017]
 gi|315034600|gb|EFT46532.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0027]
 gi|315143477|gb|EFT87493.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2141]
 gi|315149242|gb|EFT93258.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0012]
 gi|315152618|gb|EFT96634.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0031]
 gi|315159454|gb|EFU03471.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0312]
 gi|315164747|gb|EFU08764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1302]
 gi|315167578|gb|EFU11595.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1341]
 gi|315171638|gb|EFU15655.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1342]
 gi|315173222|gb|EFU17239.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1346]
 gi|315575041|gb|EFU87232.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309B]
 gi|315576758|gb|EFU88949.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0630]
 gi|315582467|gb|EFU94658.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309A]
 gi|327535508|gb|AEA94342.1| cfr family radical SAM enzyme [Enterococcus faecalis OG1RF]
 gi|329568816|gb|EGG50616.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TX1467]
          Length = 357

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 218/379 (57%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    +              +  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N  R+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|52080178|ref|YP_078969.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           licheniformis ATCC 14580]
 gi|52785555|ref|YP_091384.1| YloN [Bacillus licheniformis ATCC 14580]
 gi|319646042|ref|ZP_08000272.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp.
           BT1B_CT2]
 gi|81385601|sp|Q65JS3|RLMN_BACLD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|52003389|gb|AAU23331.1| Conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
 gi|52348057|gb|AAU40691.1| YloN [Bacillus licheniformis ATCC 14580]
 gi|317391792|gb|EFV72589.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp.
           BT1B_CT2]
          Length = 361

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 202/368 (54%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ S+     EEL+  L + G        R +QI++W+Y + +  F+ M+++S+E+R  L
Sbjct: 14  ERPSIYSFEIEELKSWLSENG----EKPFRAAQIFEWLYEKRVTSFEKMTNLSKELRTKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N+HF +   +   ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 70  NEHFVLTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 124

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S+IV+
Sbjct: 125 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDE--------------TDERVSSIVI 170

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  NF  +   L I +   GL+   R IT+STSG +P I    +E + +  AISL
Sbjct: 171 MGIGEPFDNFQEMLAFLKIVNHDKGLNIGARHITVSTSGIIPKIYEFADEKLQINFAISL 230

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PINR Y L  L+ A  +Y   +   R+TFEY +  G+ND    A  L 
Sbjct: 231 HAPNTEIRSRLMPINRAYKLPDLMKAVDYYIKKTGR-RVTFEYGLFGGVNDQVEHAEELA 289

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKGI   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 290 ELLKGIKCHVNLIPVNYVPERDYVRTPKEQIFAFEKTLKSHGVNVTIRREQGHDIDAACG 349

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 350 QLRAKERQ 357


>gi|118497539|ref|YP_898589.1| radical SAM superfamily protein [Francisella tularensis subsp.
           novicida U112]
 gi|195536235|ref|ZP_03079242.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp.
           novicida FTE]
 gi|208779338|ref|ZP_03246684.1| radical SAM enzyme, Cfr family [Francisella novicida FTG]
 gi|254372900|ref|ZP_04988389.1| hypothetical protein FTCG_00471 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|205829766|sp|A0Q6H0|RLMN_FRATN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118423445|gb|ABK89835.1| radical SAM superfamily protein [Francisella novicida U112]
 gi|151570627|gb|EDN36281.1| hypothetical protein FTCG_00471 [Francisella novicida GA99-3549]
 gi|194372712|gb|EDX27423.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp.
           novicida FTE]
 gi|208745138|gb|EDZ91436.1| radical SAM enzyme, Cfr family [Francisella novicida FTG]
          Length = 370

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 158/382 (41%), Positives = 229/382 (59%), Gaps = 22/382 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G+ ++ +E+  + IG      +    Q++KWI+ +G+ DF  M+D+ + +RH L
Sbjct: 4   DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  P++V  K S DGT KWL+        G   +ETV+IPE+ RGTLCVSSQVGC
Sbjct: 60  KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+ 
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVA 283

Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +LK    PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL           ++ ++  G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365


>gi|89095332|ref|ZP_01168250.1| hypothetical protein MED92_00580 [Oceanospirillum sp. MED92]
 gi|89080407|gb|EAR59661.1| hypothetical protein MED92_00580 [Oceanospirillum sp. MED92]
          Length = 371

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 158/375 (42%), Positives = 224/375 (59%), Gaps = 24/375 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+G+   ++E    +IG      + R +Q+ KWI+  G   F  M++IS+ +R  L
Sbjct: 6   KKVNLLGLSPAKMEAFFDEIG----EKKFRATQVLKWIHQLGATSFDEMTNISKALRAKL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PE++ EK S DGTRKW++R  +        +E V IP+  R TLCVSSQVGC
Sbjct: 62  EEVAEIREPEVLLEKTSKDGTRKWVIRTDS-----GSSVEAVLIPDGERKTLCVSSQVGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q    NLT  EI+ Q+ +A    G++               R +SN+V+
Sbjct: 117 SLDCSFCSTGKQGFNSNLTTAEIIGQLRIAIRSYGEYNTTSQ----------RVVSNVVL 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV  ++++  +      SKRR+TLST+G VP I ++ E   V LAISLH
Sbjct: 167 MGMGEPLMNFDNVVDAITLMMEDNAYCLSKRRVTLSTAGVVPAIDKLREVTDVSLAISLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303
           A ++DLR+ILVPIN++YP++ L+ AC  Y    N +R IT EY ++ G+ND P  A  L+
Sbjct: 227 APNDDLRDILVPINKRYPIKELVAACNRYLDNLNDKRVITVEYTLINGVNDKPEHAKQLL 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           KIL+ +P+K+N+IPFNP+P   Y    ++ I+ F E I   G  + +R  RG +I AACG
Sbjct: 287 KILRRMPSKLNIIPFNPFPNSGYERPSEERILAFKEIIVHGGIVTTVRRTRGDEIDAACG 346

Query: 364 QL----KSLSKRIPK 374
           QL       ++R  K
Sbjct: 347 QLVGQVADRTRRSQK 361


>gi|294625018|ref|ZP_06703668.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600693|gb|EFF44780.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 405

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE             R R  Q+ KWI+ R + DF  M+D+ + +R  L
Sbjct: 25  RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKL 81

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +QH  ++ P +V +K S DGT KWLL        G   IETVYIP+K RGTLCVSSQVGC
Sbjct: 82  HQHAEVLVPNVVFDKPSADGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 138

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 139 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 187

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 188 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 247

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  L 
Sbjct: 248 AANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 307

Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  RG
Sbjct: 308 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 367

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 368 DDIDAACGQLKGQV--MDRTRRQ 388


>gi|315123120|ref|YP_004065126.1| hypothetical protein PSM_B0177 [Pseudoalteromonas sp. SM9913]
 gi|315016880|gb|ADT70217.1| hypothetical protein PSM_B0177 [Pseudoalteromonas sp. SM9913]
          Length = 376

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/383 (43%), Positives = 226/383 (59%), Gaps = 21/383 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   KK +L+ + R+ + E  +  G        R  Q+ KWIY  G+ +F  MS++++++
Sbjct: 1   MTEQKKINLLDLNRDAMRELFVSFG----EKPFRGDQVMKWIYHFGVDNFDEMSNVNKKL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           +  L     I+ PEI   + + DGT K+ L        G  E+E V+IPEK R TLCVSS
Sbjct: 57  KEKLKNECEIVAPEISVRQQASDGTIKYALVLE-----GGQEVEAVWIPEKDRATLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C+FC T  Q   RNL   EI+ QV      +G          +   S  R ++
Sbjct: 112 QVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG----------LDGNSEKRPVT 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  NV  ++ +  D  G   SKRR+TLSTSG VP +  + E+I V LA
Sbjct: 162 NVVMMGMGEPLLNVKNVVPAMELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299
           ISLHA  N LR+ILVPIN+KYP+E  + ACR Y   S A + +T EYVML G+NDS   A
Sbjct: 222 ISLHAPDNALRDILVPINKKYPIEEFLAACRRYIDGSKANKDVTIEYVMLNGVNDSTDQA 281

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+K LKG P+K+NLIPFNP+PG EY  S    I  FS+ ++ +G +  +R  RG DI 
Sbjct: 282 HELVKTLKGTPSKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRTRGDDID 341

Query: 360 AACGQLKS-LSKRIPKVPRQEMQ 381
           AACGQL   +  R  ++ +++M+
Sbjct: 342 AACGQLAGDVVDRTKRMAKKKMR 364


>gi|21231430|ref|NP_637347.1| hypothetical protein XCC1982 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768516|ref|YP_243278.1| hypothetical protein XC_2202 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|81305512|sp|Q4UUL5|RLMN_XANC8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81794005|sp|Q8P984|RLMN_XANCP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|21113100|gb|AAM41271.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573848|gb|AAY49258.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 401

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/382 (42%), Positives = 224/382 (58%), Gaps = 28/382 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L+ + RE LE             R R  Q+ KWI+ R + DF  M+D+ + +R  L+
Sbjct: 22  KQNLLDLDREGLEHFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLH 78

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QH  ++ P +V +K S DGT KWLL        G   IETVYIP+K RGTLCVSSQVGC 
Sbjct: 79  QHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGCG 135

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VMM
Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVMM 184

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLATESDVSLAVSLHA 244

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  L +
Sbjct: 245 ANDVLRESLVPLNKKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQLAR 304

Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
           +++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  RG 
Sbjct: 305 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGD 364

Query: 357 DILAACGQLKSLSKRIPKVPRQ 378
           DI AACGQLK     + +  RQ
Sbjct: 365 DIDAACGQLKGQV--MDRTRRQ 384


>gi|319786998|ref|YP_004146473.1| radical SAM enzyme, Cfr family [Pseudoxanthomonas suwonensis 11-1]
 gi|317465510|gb|ADV27242.1| radical SAM enzyme, Cfr family [Pseudoxanthomonas suwonensis 11-1]
          Length = 418

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/382 (42%), Positives = 224/382 (58%), Gaps = 28/382 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L+ + RE LE    +        R R  Q+ KWI+ R + DF  M+D+ + +R  L+
Sbjct: 35  KQNLLELDREGLERFFEE---TLGEKRYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLH 91

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            H  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVGC 
Sbjct: 92  AHAEVVVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVGCG 148

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VMM
Sbjct: 149 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVMM 197

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLHA
Sbjct: 198 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSVESDVSLAVSLHA 257

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LR  LVP+NRKYP+  L+ +C  Y         +TFEY ++KG+ND P  A  L +
Sbjct: 258 PNDALRETLVPLNRKYPIAELMASCARYLRANKKRESVTFEYTLMKGVNDQPEHARQLAR 317

Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
           +++            K+NLIPFNP+PG  Y  SD+  I  F + +  S   + +R  RG 
Sbjct: 318 LMRQFDNAVQARDSGKVNLIPFNPFPGTRYERSDEATIRAFQKILLDSQVLTMVRRTRGD 377

Query: 357 DILAACGQLKSLSKRIPKVPRQ 378
           DI AACGQLK     + +  RQ
Sbjct: 378 DIDAACGQLKGQV--MDRTRRQ 397


>gi|149190092|ref|ZP_01868369.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1]
 gi|148836122|gb|EDL53082.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1]
          Length = 374

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 149/382 (39%), Positives = 210/382 (54%), Gaps = 21/382 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+   R+ + +   +          R  Q+ KWIY  G  DF+ M++I++++R  L
Sbjct: 4   QKVNLLDFDRKGMRKFFQE---ELGEKAFRADQVMKWIYHFGCDDFEKMTNINKKLREKL 60

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  P + + + S DGT KW +R          ++ETVYIP+  R TLCVSSQVGC
Sbjct: 61  IRLAEIKAPTVSEAQHSSDGTIKWAMRVGD------QDVETVYIPDDDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+VM
Sbjct: 115 ALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREVG----------LEKETGRRPITNVVM 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  EI V LAISLH
Sbjct: 165 MGMGEPLLNMKNLMPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGEIDVALAISLH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302
           A ++ LR+ ++PIN ++ +E  + + R Y   SNA R  +T EYV+L  +ND    A  L
Sbjct: 225 APNDKLRSEIMPINDRWDIEDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAREL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LK  PAKINLIPFNP+PG  Y       I  F + + +  Y+  +R  RG DI AAC
Sbjct: 285 AELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMQYDYTVTVRKTRGDDIDAAC 344

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL        K  +Q  +  G
Sbjct: 345 GQLVGDVIDRTKRTKQLAEQKG 366


>gi|21242760|ref|NP_642342.1| hypothetical protein XAC2016 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108240|gb|AAM36878.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 405

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE             R R  Q+ KWI+ R + DF  M+D+ + +R  L
Sbjct: 25  RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKL 81

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +QH  ++ P +V +K S DGT KWLL        G   IETVYIP+K RGTLCVSSQVGC
Sbjct: 82  HQHAEVLVPNVVFDKPSADGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 138

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L CSFC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 139 GLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 187

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 188 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 247

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  L 
Sbjct: 248 AANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 307

Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  RG
Sbjct: 308 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 367

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 368 DDIDAACGQLKGQV--MDRTRRQ 388


>gi|228940952|ref|ZP_04103511.1| Radical SAM family enzyme [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228973881|ref|ZP_04134457.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980471|ref|ZP_04140781.1| Radical SAM family enzyme [Bacillus thuringiensis Bt407]
 gi|228779291|gb|EEM27548.1| Radical SAM family enzyme [Bacillus thuringiensis Bt407]
 gi|228785906|gb|EEM33909.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818788|gb|EEM64854.1| Radical SAM family enzyme [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326941633|gb|AEA17529.1| radical SAM protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 362

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEELQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|257087248|ref|ZP_05581609.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256995278|gb|EEU82580.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|315026051|gb|EFT37983.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2137]
          Length = 357

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 218/379 (57%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    +              +  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N  R+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIQKTNR-RVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|256619523|ref|ZP_05476369.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|307275985|ref|ZP_07557118.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2134]
 gi|256599050|gb|EEU18226.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|306507315|gb|EFM76452.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2134]
 gi|315146175|gb|EFT90191.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4244]
          Length = 357

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 218/379 (57%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    +              +  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYVNVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N  R+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|262274790|ref|ZP_06052601.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae
           CIP 101886]
 gi|262221353|gb|EEY72667.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae
           CIP 101886]
          Length = 373

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 150/383 (39%), Positives = 208/383 (54%), Gaps = 21/383 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ L     +          R  QI KW+Y  G+ DF  MS+I++ +R 
Sbjct: 2   TTEKINLLDFDRQALRAFFAE---ELGEKAFRADQIMKWMYHFGVDDFDQMSNINKVLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  PE+   + S DGT KW +R       G  ++ETVYIPE  R TLCVSSQV
Sbjct: 59  KLKARCEIRAPEVSAAQYSADGTIKWAMRV------GNQDVETVYIPEDDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALDCKFCSTAQQGFNRNLKVSEIIGQVWRAAKEIG----------VEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L++  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALNLMLDDLGYGLSKRRVTVSTSGVVSGLEQMIGKIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDAL 300
           LHA +++LR+ ++PIN +Y +E  + + R Y   SN    R+T EY++L  +ND    A 
Sbjct: 223 LHAPNDELRSQIMPINDRYDIETFLASVRRYIASSNANRGRVTVEYILLDHVNDDMEHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L ++LK  PAKINLIPFNP+PG  Y       I  F + + +  Y+  +R  RG DI A
Sbjct: 283 QLAELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYDYTVIVRKTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383
           ACGQL        K  +  + I 
Sbjct: 343 ACGQLVGDVIDRTKRTQNRLNIE 365


>gi|222151049|ref|YP_002560203.1| hypothetical protein MCCL_0800 [Macrococcus caseolyticus JCSC5402]
 gi|222120172|dbj|BAH17507.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 363

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 129/372 (34%), Positives = 207/372 (55%), Gaps = 25/372 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M    K S+  +   EL+E L   G        R  QI+ W+YV+ +  F+ MS++S+E+
Sbjct: 12  MPNFDKPSIYSLQLGELKEWLATHG----QQSFRAKQIYDWLYVKRVNSFEEMSNLSKEL 67

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R +L  +F++   + V ++ S DGT K+L             IETV +      ++CV++
Sbjct: 68  RKVLEDNFTMTTLKTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTT 122

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C+FC +    L RNL A EI+ QVL  +  L +              V  ++S
Sbjct: 123 QVGCRIGCTFCASTLGGLKRNLEAGEIVAQVLNVQKALDE--------------VEERVS 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           ++V+MG+GEP  N++ +   L + +   GL+   R IT+STSG +P I     EE+ +  
Sbjct: 169 HVVIMGIGEPFENYEEMMDFLKVINHDDGLNIGARHITVSTSGIIPRIYDFADEELQINF 228

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH  +ND+R+ L+PINR Y LE L+++  +Y   +   RITFEY +  G+ND    A
Sbjct: 229 ALSLHGPNNDIRSRLMPINRAYDLEKLMESIEYYVNKTGR-RITFEYGLFGGVNDQVHHA 287

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L +++K +   +NLIP N  P  +Y+ + ++DI  F + +KR+G ++ IR   G DI 
Sbjct: 288 KELAQLIKHLNCHVNLIPVNHVPERDYVRTPKEDIFKFEKELKRNGINATIRREHGSDID 347

Query: 360 AACGQLKSLSKR 371
           AACGQL++  ++
Sbjct: 348 AACGQLRAKERQ 359


>gi|289551002|ref|YP_003471906.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180534|gb|ADC87779.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
           lugdunensis HKU09-01]
          Length = 364

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 207/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K+S+  +  +E+++ L++ G      + R  QI++W+Y + +  F+ M+++S+++R LL
Sbjct: 17  DKQSIYSLRFDEMQQWLVEQG----QQKFRAKQIYEWLYQKRVNSFEEMTNLSKDLRKLL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             HF +     V ++ S DGT K+L             IETV +      ++CV++QVGC
Sbjct: 73  ADHFVMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +                + +   ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG VP I    +E I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIVPRIYDFADEGIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  +D+R+ L+PINR Y ++ L++A R+Y   +N  RITFEY +  G+ND    A  L 
Sbjct: 234 HAAKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTNR-RITFEYGLFGGVNDQLEHARELA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTSKDDIFKFEKELKRLGVNATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|160871646|ref|ZP_02061778.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
 gi|159120445|gb|EDP45783.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
          Length = 372

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 179/381 (46%), Positives = 227/381 (59%), Gaps = 25/381 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+   + E+E    ++G        R  Q  KWI+  GI D   MS+ S+ +R  L  
Sbjct: 6   KNLLDYDKVEMELFFQELG----EKSFRAQQALKWIHQEGITDIDKMSNFSKSLRSRLKT 61

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  PEI+ EK S DGT+KWLLR           +ETV+IPE+ RGTLCVSSQVGC+L
Sbjct: 62  IAQIDLPEIIIEKKSEDGTKKWLLRLTD-----ANCVETVFIPERGRGTLCVSSQVGCAL 116

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC T  Q   RNLT  EI+ QV LA   L       D            +SNIVMMG
Sbjct: 117 NCSFCSTAQQGFNRNLTVAEIIGQVWLAVRCLSRDSLRHD----------HTVSNIVMMG 166

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NFD+V K++++  D  G  FSKRR+TLSTSG VP + R+ +   V LAISLHA 
Sbjct: 167 MGEPLLNFDSVVKAMNLMMDDFGYGFSKRRVTLSTSGVVPALRRLSKASEVSLAISLHAP 226

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +++LR+ LVPIN+KYPL  L++ CR+Y    + RR+T EYVML+GIND P  A  LIKIL
Sbjct: 227 NDELRDRLVPINKKYPLSELLEVCRNYFRSEHRRRVTMEYVMLEGINDQPEHARQLIKIL 286

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL- 365
           +GIP KINLIPFNP+P   Y  S Q  I  F   + ++G ++  R  RG DI AACGQL 
Sbjct: 287 EGIPVKINLIPFNPFPFARYRRSSQITIERFKSILVKAGLNTITRKTRGEDIDAACGQLV 346

Query: 366 -----KSLSKRIPKVPRQEMQ 381
                +S  KR  K     +Q
Sbjct: 347 GYVHDRSYHKRHQKAVSTSIQ 367


>gi|254374354|ref|ZP_04989836.1| hypothetical protein FTDG_00521 [Francisella novicida GA99-3548]
 gi|151572074|gb|EDN37728.1| hypothetical protein FTDG_00521 [Francisella novicida GA99-3548]
          Length = 370

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 229/382 (59%), Gaps = 22/382 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G+ ++ +E+  + IG      +    Q++KWI+ +G+ DF  M+D+ + +RH L
Sbjct: 4   DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  P++V  K S DGT KWL+        G   +ETV+IPE+ RGTLCVSSQVGC
Sbjct: 60  KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ IND+  DA  L+ 
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEINDNLSDAEELVA 283

Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +LK    PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL           ++ ++  G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365


>gi|15837061|ref|NP_297749.1| hypothetical protein XF0459 [Xylella fastidiosa 9a5c]
 gi|81623829|sp|Q9PG43|RLMN_XYLFA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|9105305|gb|AAF83269.1|AE003896_6 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 406

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 159/383 (41%), Positives = 222/383 (57%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE     +       R R  Q+ KWI+ R + DF+ M+D+ + +R  L
Sbjct: 26  RKQNLLELNREGLERFFENV---LGEKRYRAHQVMKWIHHRYVSDFEQMTDVGKALRARL 82

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                +  P +V +K S DGT KWLL            IETVYIP+K RGTLCVSSQ+GC
Sbjct: 83  QACAEVRVPCVVFDKHSADGTHKWLLAMD---TDSKNAIETVYIPDKGRGTLCVSSQIGC 139

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 140 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 188

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   S +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 189 MGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 248

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+ +C  Y  +      +TFEY ++KG+ND    A  L+
Sbjct: 249 APNDKLREQLVPLNKKYPIAELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELV 308

Query: 304 KILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           K+++            K+NLIPFNP+PG  Y  S + DI  F + +  +   + +R  RG
Sbjct: 309 KLMRQFDCAMQVKGAAKVNLIPFNPFPGTYYERSTEVDIRAFQKILLDAQILAMVRRTRG 368

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 369 DDIDAACGQLKGQV--VDRTRRQ 389


>gi|315658497|ref|ZP_07911369.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590]
 gi|315496826|gb|EFU85149.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590]
          Length = 364

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 129/370 (34%), Positives = 207/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K+S+  +  +E+++ L++ G      + R  QI++W+Y + +  F+ M+++S+++R LL
Sbjct: 17  DKQSIYSLRFDEMQQWLVEQG----QQKFRAKQIYEWLYQKRVNSFEEMTNLSKDLRKLL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             HF +     V ++ S DGT K+L             IETV +      ++CV++QVGC
Sbjct: 73  ADHFVMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +                + +   ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG VP I     EEI +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIVPRIYDFADEEIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  +D+R+ L+PINR Y ++ L++A R+Y   +N  RITFEY +  G+ND    A  L 
Sbjct: 234 HAAKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTNR-RITFEYGLFGGVNDQLEHARELA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTSKDDIFKFEKELKRLGVNATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|194014876|ref|ZP_03053493.1| radical SAM enzyme, Cfr family [Bacillus pumilus ATCC 7061]
 gi|194013902|gb|EDW23467.1| radical SAM enzyme, Cfr family [Bacillus pumilus ATCC 7061]
          Length = 360

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 200/366 (54%), Gaps = 25/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+      E++E L +    Q     R +QI++W+Y + +  F  MS++S+++R  L  
Sbjct: 15  PSIYSFELHEMKEWLKE----QDEKPFRAAQIFEWLYEKRVTSFDEMSNLSKDLREKLKD 70

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F+I   + V ++ S DGT K+L             IETV +  +   ++CV++QVGC +
Sbjct: 71  QFTITTLKTVIKQTSQDGTIKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGCRI 125

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L RNL A EI+ QVL  +  L +                 ++S++V+MG
Sbjct: 126 GCTFCASTLGGLKRNLEAGEIVAQVLKVQQALDE--------------TDERVSSVVIMG 171

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEP  NF+ +   L I +   GL+   R IT+STSG +P I +  +E + +  A+SLHA
Sbjct: 172 IGEPFDNFEEMLAFLKIINHDHGLNIGARHITVSTSGIIPKIYQFADEQMQINFAVSLHA 231

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + ++R+ L+PIN+ Y L  L++A  +Y   +   R++FEY +  G+ND    A  L  +
Sbjct: 232 PNTEIRSRLMPINKAYKLPKLMEAIEYYIQKTGR-RVSFEYGLFGGVNDQVHHAEELADL 290

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGI   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACGQL
Sbjct: 291 LKGIKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKERGVNVTIRREQGHDIDAACGQL 350

Query: 366 KSLSKR 371
           ++  ++
Sbjct: 351 RAKERQ 356


>gi|156973378|ref|YP_001444285.1| hypothetical protein VIBHAR_01065 [Vibrio harveyi ATCC BAA-1116]
 gi|205829926|sp|A7MU39|RLMN_VIBHB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|156524972|gb|ABU70058.1| hypothetical protein VIBHAR_01065 [Vibrio harveyi ATCC BAA-1116]
          Length = 375

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 141/365 (38%), Positives = 203/365 (55%), Gaps = 21/365 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ + +              R  Q+ KWIY  G+ DF  M++I++++R 
Sbjct: 2   TTEKINLLDFDRKGMRQFFAD---ELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW ++          ++ETVYIPE  R TLCVSSQV
Sbjct: 59  KLQHKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA +++LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++K  P KINLIPFNP+PG  Y       I  F + + +  ++  +R  RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342

Query: 361 ACGQL 365
           ACGQL
Sbjct: 343 ACGQL 347


>gi|325927620|ref|ZP_08188849.1| 23S rRNA m(2)A-2503 methyltransferase family [Xanthomonas perforans
           91-118]
 gi|325541987|gb|EGD13500.1| 23S rRNA m(2)A-2503 methyltransferase family [Xanthomonas perforans
           91-118]
          Length = 401

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/383 (42%), Positives = 226/383 (59%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE             R R  Q+ KWI+ R + DF  M+D+ + +R  L
Sbjct: 21  RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKL 77

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVGC
Sbjct: 78  HQHAEVLVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 135 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  L 
Sbjct: 244 AANDTLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 303

Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  RG
Sbjct: 304 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 363

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 364 DDIDAACGQLKGQV--MDRTRRQ 384


>gi|308069673|ref|YP_003871278.1| hypothetical protein PPE_02915 [Paenibacillus polymyxa E681]
 gi|305858952|gb|ADM70740.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 346

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 196/365 (53%), Gaps = 25/365 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +  +  EEL++     G P      R  QI+ W+YV+ + DF  M+++S+ +R  L 
Sbjct: 2   KPFIYDLTLEELQDWAKNNGEPA----FRGGQIFDWLYVKRVNDFSEMTNLSKALREKLE 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + FS +    + +  S DGT K+L             IETV +      ++CV++QVGC 
Sbjct: 58  EQFSFVTLSEITKLESKDGTVKFLFGLHDD-----HAIETVIMRHNYGNSICVTTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L RNLTA EI  QV+ A+ +              +     ++S+IV+M
Sbjct: 113 IGCTFCASTLGGLKRNLTAGEITAQVVQAQKI--------------LDKTNERVSSIVIM 158

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEP  N++     L       GL+  +R IT+STSG VPNI +  +E   + LAIS+H
Sbjct: 159 GSGEPFENYEATMTFLRTMVHEKGLNIGQRHITVSTSGIVPNIYKFADEDTQINLAISIH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR+ L+P+NR+YP + ++D+ R+Y   +   RI+FEY ++ G+ND    A  L  
Sbjct: 219 APNDALRSKLMPVNRRYPFKDVMDSLRYYLAKTGR-RISFEYALIGGVNDQAEHAEELAD 277

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK +   +NLIP N  P  +Y+ + + DI  F   +   G +  IR  +G DI AACGQ
Sbjct: 278 VLKDMLCHVNLIPVNHVPERKYVRTSRSDIFNFQRILAEKGVNVTIRREQGHDIAAACGQ 337

Query: 365 LKSLS 369
           L++  
Sbjct: 338 LRAKH 342


>gi|289666007|ref|ZP_06487588.1| hypothetical protein XcampvN_23775 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 401

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE             R R  Q+ KWI+ R + DF  M+D+ + +R  L
Sbjct: 21  RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKPLRAKL 77

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +QH  ++ P +V +K S DGT KWLL        G   IETVYIP+K RGTLCVSSQVGC
Sbjct: 78  HQHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 135 GLNCTFCSTATQGFNRNLTTAEIVGQVWVAARHLGN-----------VPHQQRRLTNVVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  L 
Sbjct: 244 AANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 303

Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  RG
Sbjct: 304 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 363

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 364 DDIDAACGQLKGQV--MDRTRRQ 384


>gi|319941514|ref|ZP_08015841.1| ribosomal RNA large subunit methyltransferase N [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804988|gb|EFW01827.1| ribosomal RNA large subunit methyltransferase N [Sutterella
           wadsworthensis 3_1_45B]
          Length = 400

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 152/384 (39%), Positives = 216/384 (56%), Gaps = 22/384 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + +L+      L+     IG        R  Q+ +W++   + DF  M+D+++  R  L 
Sbjct: 24  RVNLLDFDAAGLKAWCESIG----EKPFRARQLTRWVHRHLVCDFNEMTDLAKTFRAKLL 79

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE++ EK S DGTRKWL       +G    +E V+IPE  RGTLC+SSQ GC+
Sbjct: 80  KLAEIRPPEVIHEKKSSDGTRKWLF-----AVGNGNAVEAVFIPEDDRGTLCISSQAGCA 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q   RNLT  EI+ Q+  A   L    G  D          R ISN+V+M
Sbjct: 135 MGCLFCSTGKQGFNRNLTTAEIVGQLWTAERELCRDRGITDPN-------DRVISNVVLM 187

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V  ++ I  D  G   S+RR+T+STSG V  I ++ E   V LA+SLHA
Sbjct: 188 GMGEPLQNLDAVIPAIKIFLDDDGYGLSRRRVTVSTSGLVRQIDKLAEAAPVALAVSLHA 247

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             + LR+ L+PIN+K+PL  L+ ACR Y  ++    ITFEYVML GINDS  DA +L  +
Sbjct: 248 ADDGLRDKLMPINKKHPLGDLMAACRRYLRVAPRDFITFEYVMLGGINDSLADADHLAAL 307

Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++   +P K NLIPFNP+P  +    D++ ++ F   +   GY + +R  RG DI AACG
Sbjct: 308 VRREHVPCKFNLIPFNPFPQSDLEKPDREKVLAFCRRLNELGYVTTVRKTRGDDIDAACG 367

Query: 364 QL----KSLSKRIPKVPRQEMQIT 383
           QL    +  ++R  ++ +Q+ +  
Sbjct: 368 QLAGEVRDRTRRAERLAQQKAEAA 391


>gi|229031494|ref|ZP_04187494.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           AH1271]
 gi|228729783|gb|EEL80763.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus
           AH1271]
          Length = 362

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 204/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + ++++  MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYDDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   G+    R +T+STSG VP I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIINHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+ + +LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HSANTELRSKLMPINRAYKLPDLMEAVKYYVNKTGR-RITFEYGLFGGENDQVEQAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|147675306|ref|YP_001216242.1| hypothetical protein VC0395_A0286 [Vibrio cholerae O395]
 gi|262168795|ref|ZP_06036490.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           RC27]
 gi|205829925|sp|A5F3F8|RLMN_VIBC3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146317189|gb|ABQ21728.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227012581|gb|ACP08791.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|262022913|gb|EEY41619.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
           RC27]
          Length = 373

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 147/380 (38%), Positives = 206/380 (54%), Gaps = 22/380 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ L     +          R  Q+ KWIY  G  DF  M++I++++R 
Sbjct: 2   TTEKVNLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW +R          ++ETVYIPE  R TLCVSSQV
Sbjct: 59  KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEDDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ +E  ++  R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L ++LK  P KINLIPFNP+PG  Y       I  F + + +  ++  IR  RG DI A
Sbjct: 283 ELAELLKRTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342

Query: 361 ACGQL-KSLSKRIPKVPRQE 379
           ACGQL   +  R  +   ++
Sbjct: 343 ACGQLVGDVIDRTKRTKAKQ 362


>gi|332678238|gb|AEE87367.1| radical SAM superfamily protein [Francisella cf. novicida Fx1]
          Length = 370

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 229/382 (59%), Gaps = 22/382 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G+ ++ +E+  + IG      +    Q++KWI+ +G+ DF  M+D+ + +RH L
Sbjct: 4   DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  P++V  K S DGT KWL+        G   +ETV+IPE+ RGTLCVSSQVGC
Sbjct: 60  KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ IND+  DA  L+ 
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEINDNLSDAEQLVA 283

Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +LK    PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL           ++ ++  G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365


>gi|229918582|ref|YP_002887228.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium
           sp. AT1b]
 gi|229470011|gb|ACQ71783.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
          Length = 361

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 195/366 (53%), Gaps = 25/366 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SL  +   ELE  +++ G        R  Q++ W+YV+ +  F  M+++ + +R  L 
Sbjct: 15  KPSLYSLTFPELEAWVIEAG----EKAFRAKQLYDWMYVKRVTTFDDMTNVPKALRDKLE 70

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   + + ++ S DGT K+L             IETV +  +   ++CV++QVGC 
Sbjct: 71  ASFQLTTLKELVKQESQDGTIKFLFELQD-----GYSIETVLMRHEYGNSICVTTQVGCR 125

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L RNL A EI  QVL  +                + + G ++ +IV+M
Sbjct: 126 IGCTFCASTLGGLKRNLEAGEITAQVLDVQR--------------ALDATGERVDSIVVM 171

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+D + + L   +   GL+   R IT+STSG VP I +  +E + +  AISLH
Sbjct: 172 GIGEPFDNYDELMRFLRTVNHDNGLNIGARHITVSTSGIVPKIYKFADEGMRINFAISLH 231

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A + +LR  L+PINR + L+ L+DA R+Y   S   RITFEY +  G+ND+   A  L  
Sbjct: 232 APTTELRTKLMPINRAFDLDKLMDAVRYYTEKSGR-RITFEYGLFGGVNDTEEYAHLLAD 290

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKGI   +NLIP N     +Y+ + +  I  F + +K    +  IR  +G DI AACGQ
Sbjct: 291 LLKGIKCHVNLIPVNHVLERDYVRTPRAQIFAFEKVLKDRNVNVTIRREQGSDIDAACGQ 350

Query: 365 LKSLSK 370
           L++  +
Sbjct: 351 LRAKER 356


>gi|187931627|ref|YP_001891611.1| radical SAM enzyme domain, Cfr family [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|205829765|sp|B2SGH6|RLMN_FRATM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|187712536|gb|ACD30833.1| radical SAM enzyme domain, Cfr family [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 370

 Score =  438 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 158/382 (41%), Positives = 229/382 (59%), Gaps = 22/382 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G+ ++ +E+  + IG      +    Q++KWI+ +G+ DF  M+D+ + +RH L
Sbjct: 4   DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  P++V  K S DGT KWL+        G   +ETV+IPE+ RGTLCVSSQVGC
Sbjct: 60  KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+ 
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQNGPHKHITFEYTLMEEVNDNLSDAEELVA 283

Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +LK    PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL           ++ ++  G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365


>gi|228909689|ref|ZP_04073512.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 200]
 gi|228849978|gb|EEM94809.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 200]
          Length = 362

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQIHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|304404145|ref|ZP_07385807.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
 gi|304347123|gb|EFM12955.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
          Length = 356

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 199/365 (54%), Gaps = 25/365 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +     EEL+  +   G P      R  Q++ W+YV+ +R F  MS++ +  R  L+
Sbjct: 10  KPFIYDYTLEELQAWVKDNGEPA----FRAGQLFDWLYVKRVRSFDEMSNLPKAFRQKLD 65

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F+ +    + +  S DGT K+L             IETV +      ++CV++QVGC 
Sbjct: 66  DQFAFVTLSEITKFESKDGTVKFLFGLHDN-----HAIETVVMRHNYGNSICVTTQVGCR 120

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L RNLTA EI+ QV+ A+ L              + +   ++S+IV+M
Sbjct: 121 VGCTFCASTLGGLKRNLTAGEIVAQVVWAQQL--------------LDATNERVSSIVIM 166

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEP  N++     L I     GL+  +R IT+STSG VPNI +  +E   + LAIS+H
Sbjct: 167 GTGEPFENYEPTMNFLRIMIHEKGLNIGQRHITVSTSGIVPNIYKFADENTQINLAISIH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR+ L+P+NR++P   ++++ R+Y   +   RITFEY ++ G+ND P  A  L +
Sbjct: 227 APNDALRSKLMPVNRRFPFNDVMESLRYYIAKTGR-RITFEYALIGGVNDRPEHAEELAQ 285

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+G+   +NLIP N  P   Y+ + + DI  F   +++   ++ IR  +G DI AACGQ
Sbjct: 286 VLQGMLCHVNLIPVNHVPERNYVRTPRDDIFEFQRILEKHKINATIRREQGHDIAAACGQ 345

Query: 365 LKSLS 369
           L++  
Sbjct: 346 LRAKH 350


>gi|56476113|ref|YP_157702.1| Fe-S-cluster redox protein [Aromatoleum aromaticum EbN1]
 gi|81358332|sp|Q5P7B0|RLMN_AZOSE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|56312156|emb|CAI06801.1| predicted Fe-S-cluster redox enzyme [Aromatoleum aromaticum EbN1]
          Length = 408

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 154/409 (37%), Positives = 215/409 (52%), Gaps = 43/409 (10%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            L   +L+    + L     + G        R  Q+ +W++  G  DF  M+D+++ +R 
Sbjct: 1   MLTPVNLLDFDVDGLVTWFAERG----EKPFRARQVMRWMHRFGETDFGNMTDVAKSLRA 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L +   I  P  + + +S DGTRKWLL      +G    +E V+IPE +RGTLC+SSQ 
Sbjct: 57  KLAEEACIRAPRAIRDAVSVDGTRKWLL-----DVGSANAVEAVFIPETNRGTLCISSQA 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV----------- 171
           GC+L C+FC TG Q   RNL+A EI+ Q+ LA  LLG        +              
Sbjct: 112 GCALDCAFCSTGKQGFNRNLSAAEIIGQLWLANRLLGGSASPAGSKDGDGGPDHASRATK 171

Query: 172 ----------------------IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
                                     GR ISN+VMMGMGEPL NFDNV  +L +  D   
Sbjct: 172 LDHRAADAKGVQSDSWRSSDPEEDHNGRVISNVVMMGMGEPLANFDNVVTALRLMLDDHA 231

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
              S+RR+T+STSG VP + R+ +E  V LA+SLHA  + LR+ LVPINRKYPL  L+ A
Sbjct: 232 YGLSRRRVTVSTSGIVPAMDRLRDECPVALAVSLHAPDDALRDRLVPINRKYPLRELMAA 291

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           C+ Y   +    +TFEYVML  +NDS   A  L+++++ +P K NLIPFNP+P   +  S
Sbjct: 292 CQRYLERAPRDFVTFEYVMLDDVNDSDAHARALVELVRDVPCKFNLIPFNPFPNSGFDRS 351

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK-RIPKVPR 377
             + I  F+  +  +G  +  R  RG D+ AACGQL    + R  +  R
Sbjct: 352 PAERIRRFAAILIDAGIVTTTRKTRGDDVNAACGQLAGQVQDRSRRTVR 400


>gi|257422170|ref|ZP_05599160.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|257163994|gb|EEU93954.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|315157206|gb|EFU01223.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0043]
          Length = 357

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 218/379 (57%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVATFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    +              +  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N  R+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|218899017|ref|YP_002447428.1| hypothetical protein BCG9842_B1280 [Bacillus cereus G9842]
 gi|228902368|ref|ZP_04066524.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 4222]
 gi|228966814|ref|ZP_04127858.1| Radical SAM family enzyme [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|254807152|sp|B7IUM3|RLMN_BACC2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|218543794|gb|ACK96188.1| conserved hypothetical protein TIGR00048 [Bacillus cereus G9842]
 gi|228792913|gb|EEM40471.1| Radical SAM family enzyme [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857266|gb|EEN01770.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 4222]
          Length = 362

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQIHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   GL    R +T+STSG +P I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEELQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|58582157|ref|YP_201173.1| hypothetical protein XOO2534 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624049|ref|YP_451421.1| hypothetical protein XOO_2392 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|75435230|sp|Q5GZT3|RLMN_XANOR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123521888|sp|Q2P2T0|RLMN_XANOM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829944|sp|B2SMB3|RLMN_XANOP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|58426751|gb|AAW75788.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367989|dbj|BAE69147.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 401

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE             R R  Q+ KWI+ R + DF  M+D+ + +R  L
Sbjct: 21  RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAKL 77

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +QH  ++ P +V +K S DGT KWLL        G   IETVYIP+K RGTLCVSSQVGC
Sbjct: 78  HQHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L CSFC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 135 GLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  L 
Sbjct: 244 AANDALRETLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 303

Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  RG
Sbjct: 304 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTIVRRTRG 363

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 364 DDIDAACGQLKGQV--MDRTRRQ 384


>gi|332184101|gb|AEE26355.1| radical SAM superfamily protein [Francisella cf. novicida 3523]
          Length = 370

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 158/382 (41%), Positives = 228/382 (59%), Gaps = 22/382 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G+ ++ +E+  + IG      +    Q++KWI+ +G+ DF  M+D+ + +R+ L
Sbjct: 4   DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRNKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  P++V  K S DGT KWL+        G   +ETV+IPE+ RGTLCVSSQVGC
Sbjct: 60  KEKTEITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LRN +VPIN+KY ++ L+ AC+ Y      + ITFEY +++ IND+  DA  L+ 
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLKACKLYAEKGPHKHITFEYTLMEEINDNLSDAEELVA 283

Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +LK    PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL           ++ ++  G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365


>gi|90417489|ref|ZP_01225412.1| hypothetical protein GB2207_07422 [marine gamma proteobacterium
           HTCC2207]
 gi|90330730|gb|EAS46009.1| hypothetical protein GB2207_07422 [marine gamma proteobacterium
           HTCC2207]
          Length = 392

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 159/375 (42%), Positives = 222/375 (59%), Gaps = 22/375 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+    + + L  +G      R R +QI KWI+  GI D   M++IS+ +R  L 
Sbjct: 19  KTNLLGLSASRIGDFLESLG----EKRFRGTQILKWIHQYGIDDLNEMTNISKSLRESLA 74

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               ++ PE+V  + S DGTRKWL++     + G   IE VYIPE+ RGTLCVSSQ+GC+
Sbjct: 75  DVAEVVMPEVVSCQDSVDGTRKWLIK-----VDGGSCIEMVYIPERDRGTLCVSSQIGCA 129

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   R+LT  EI+ Q+ +A      F               R+++N+VMM
Sbjct: 130 LDCSFCATGKQGFARDLTTAEIIGQLWIAAKSFDQFDTKNP----------RRVTNVVMM 179

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++S+  D      SKRR+TLST+G VP + ++G+   V LAISLHA
Sbjct: 180 GMGEPLMNFNNVVDAMSLMMDDNAYGLSKRRVTLSTAGVVPELDKLGDVSDVSLAISLHA 239

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRDALNLI 303
            +++LRN LVPINRKYPL   I + + Y      N R++T EY ++  +ND    A  L 
Sbjct: 240 PNDELRNQLVPINRKYPLVDFIGSAKRYLDKMPDNRRKVTVEYTLMDRVNDRDEHAKELS 299

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L+ +P KINLIPFNP+PG EY    +  +  F + ++  GY+  +RT RG DI AACG
Sbjct: 300 VLLRDLPCKINLIPFNPFPGSEYKKVTKVALNRFRDILQNDGYTVTVRTTRGDDIAAACG 359

Query: 364 QLKSL-SKRIPKVPR 377
           QL    + R  +  R
Sbjct: 360 QLAGEVNDRTKRQER 374


>gi|229545365|ref|ZP_04434090.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX1322]
 gi|307295833|ref|ZP_07575665.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0411]
 gi|229309472|gb|EEN75459.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX1322]
 gi|306496164|gb|EFM65743.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0411]
 gi|315028571|gb|EFT40503.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4000]
          Length = 357

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 219/379 (57%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    +              +  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYVNVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R +++ INR +P+E L+ A   Y   +N  R+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTLIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|269103278|ref|ZP_06155975.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163176|gb|EEZ41672.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 372

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 150/381 (39%), Positives = 205/381 (53%), Gaps = 23/381 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+   R+ + +   +          R  QI KWIY  G  DF  M++I++++R  L 
Sbjct: 5   KVNLLDFDRKGMRKFFAE---ELEEKAFRADQIMKWIYHFGCDDFDQMTNINKKLREKLK 61

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  P +   + S DGT KW +R          ++ETVYIP+  R TLCVSSQVGC+
Sbjct: 62  VIAEIKAPTVSAAQYSKDGTIKWAMRVGD------QDVETVYIPDDDRATLCVSSQVGCA 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+VMM
Sbjct: 116 LECKFCSTAQQGFNRNLCVSEIIGQVWRAAKEIG----------VQKETGRRPITNVVMM 165

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++   I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLLPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHA 225

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
            +++LR+ ++PIN ++ +E  +DA R Y   +N    R+T EYV+L  IND    A  L 
Sbjct: 226 PTDELRSQIMPINNRWNIEEFLDAVRRYVNSTNANRGRVTVEYVLLDHINDDMEHARQLA 285

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LK  PAKINLIPFNP+PG  Y       I  F + +     +  +R  RG DI AACG
Sbjct: 286 KVLKDTPAKINLIPFNPYPGSPYNKPSNSRIDRFMKTLMEYDITVTVRKTRGDDIDAACG 345

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QL      I +  R + +  G
Sbjct: 346 QLVGDV--IDRTKRTQAKQQG 364


>gi|323481183|gb|ADX80622.1| radical SAM superfamily protein [Enterococcus faecalis 62]
          Length = 357

 Score =  438 bits (1126), Expect = e-121,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 218/379 (57%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    +              +  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N  R+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKNNR-RVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|166712105|ref|ZP_02243312.1| hypothetical protein Xoryp_11775 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 393

 Score =  438 bits (1126), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE             R R  Q+ KWI+ R + DF  M+D+ + +R  L
Sbjct: 13  RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +QH  ++ P +V +K S DGT KWLL        G   IETVYIP+K RGTLCVSSQVGC
Sbjct: 70  HQHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L CSFC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 127 GLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 175

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 176 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 235

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  L 
Sbjct: 236 AANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 295

Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  RG
Sbjct: 296 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 355

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 356 DDIDAACGQLKGQV--MDRTRRQ 376


>gi|257880074|ref|ZP_05659727.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,230,933]
 gi|257882309|ref|ZP_05661962.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,502]
 gi|257885503|ref|ZP_05665156.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,501]
 gi|257891165|ref|ZP_05670818.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,410]
 gi|257893979|ref|ZP_05673632.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,408]
 gi|258614592|ref|ZP_05712362.1| hypothetical protein EfaeD_02673 [Enterococcus faecium DO]
 gi|260560313|ref|ZP_05832489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium C68]
 gi|261208250|ref|ZP_05922923.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium TC 6]
 gi|289565948|ref|ZP_06446387.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF]
 gi|293563079|ref|ZP_06677545.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162]
 gi|293567506|ref|ZP_06678851.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071]
 gi|294615994|ref|ZP_06695821.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636]
 gi|294617653|ref|ZP_06697281.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679]
 gi|294623617|ref|ZP_06702455.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317]
 gi|314940253|ref|ZP_07847426.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04]
 gi|314941689|ref|ZP_07848568.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C]
 gi|314947667|ref|ZP_07851076.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082]
 gi|314950654|ref|ZP_07853734.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A]
 gi|314992479|ref|ZP_07857900.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B]
 gi|314996873|ref|ZP_07861878.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01]
 gi|257814302|gb|EEV43060.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,230,933]
 gi|257817967|gb|EEV45295.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,502]
 gi|257821359|gb|EEV48489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,501]
 gi|257827525|gb|EEV54151.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,410]
 gi|257830358|gb|EEV56965.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,231,408]
 gi|260073658|gb|EEW61984.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium C68]
 gi|260077507|gb|EEW65225.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium TC 6]
 gi|289162232|gb|EFD10093.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF]
 gi|291589749|gb|EFF21552.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071]
 gi|291591180|gb|EFF22862.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636]
 gi|291596117|gb|EFF27382.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679]
 gi|291596943|gb|EFF28156.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317]
 gi|291604993|gb|EFF34461.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162]
 gi|313589016|gb|EFR67861.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01]
 gi|313592939|gb|EFR71784.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B]
 gi|313597201|gb|EFR76046.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A]
 gi|313599461|gb|EFR78304.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C]
 gi|313640573|gb|EFS05153.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04]
 gi|313645908|gb|EFS10488.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082]
          Length = 355

 Score =  438 bits (1126), Expect = e-121,   Method: Composition-based stats.
 Identities = 133/376 (35%), Positives = 222/376 (59%), Gaps = 28/376 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+S+ G+  EEL    ++ G      + R +Q+W+W+Y + + +F  M+++S+++   
Sbjct: 1   MEKQSIYGLTNEELINWFIENG----EKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEK 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L++HF I   + +  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LSEHFIINPLKQMVVQEASDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q+++ +    +             ++G ++S++V
Sbjct: 112 CNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDE------------RNLGERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV   L I +D+ GL+   R IT+STSG    I       + V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L++A   Y   +N  RITFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNR-RITFEYIMLNQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +LK     A +NLIP+NP    + Y  S + D++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLKDKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKNGVNCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKV 375
           AACGQL+  SK++ K 
Sbjct: 339 AACGQLR--SKQMKKT 352


>gi|89072699|ref|ZP_01159264.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34]
 gi|89051519|gb|EAR56973.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34]
          Length = 373

 Score =  438 bits (1126), Expect = e-121,   Method: Composition-based stats.
 Identities = 150/386 (38%), Positives = 211/386 (54%), Gaps = 24/386 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  + K +L+   R+ L +   +          R  QI KWIY  G  DF  M++I++++
Sbjct: 1   MTTV-KINLLDFDRKGLRKYFAE---ELNEKPFRADQIMKWIYHFGCDDFDQMTNINKKL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  P + + + S DGT KW +R          ++ETVYIP++ R TLCVSS
Sbjct: 57  REKLKRVAEIRAPHVSEAQYSTDGTIKWAMRVGD------QDVETVYIPDEDRATLCVSS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+
Sbjct: 111 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKEVG----------IQKDTGRRPIT 160

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIVMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++ + I V LA
Sbjct: 161 NIVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIDTIDVALA 220

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRD 298
           ISLHA +++LR+ ++PIN ++ +E  +D  R Y   +N    R+T EYV+L  +ND    
Sbjct: 221 ISLHAPTDELRSQIMPINDRWNIEAFLDVVRRYVNSTNANRGRVTVEYVLLDHVNDDMEH 280

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L K+LK  PAKINLIPFNP+PG  Y       I  F + +    ++  +R  RG DI
Sbjct: 281 ARQLAKVLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDI 340

Query: 359 LAACGQLKSLSKRIPKVPRQEMQITG 384
            AACGQL      I +  R + ++  
Sbjct: 341 DAACGQLVGDV--IDRTKRTQAKLNA 364


>gi|163802471|ref|ZP_02196364.1| hypothetical protein 1103602000590_AND4_19477 [Vibrio sp. AND4]
 gi|159173772|gb|EDP58587.1| hypothetical protein AND4_19477 [Vibrio sp. AND4]
          Length = 375

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 142/365 (38%), Positives = 204/365 (55%), Gaps = 21/365 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ + +   +          R  Q+ KWIY  G+ DF  M++I++++R 
Sbjct: 2   TTEKINLLDFDRKGMRQFFAE---ELGEKSFRADQVMKWIYHFGVDDFDNMTNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW ++          ++ETVYIPE  R TLCVSSQV
Sbjct: 59  KLQYKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA +++LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  IND    A 
Sbjct: 223 LHAPNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHINDDMDHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++K  P KINLIPFNP+PG  Y       I  F + + +  ++  +R  RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342

Query: 361 ACGQL 365
           ACGQL
Sbjct: 343 ACGQL 347


>gi|124267188|ref|YP_001021192.1| hypothetical protein Mpe_A1999 [Methylibium petroleiphilum PM1]
 gi|205829632|sp|A2SHB8|RLMN_METPP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|124259963|gb|ABM94957.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 394

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 149/386 (38%), Positives = 216/386 (55%), Gaps = 32/386 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +   +L+    + L     ++G      R R +Q+++WI+ +G  DF  MSD+++ +R  
Sbjct: 1   MTAANLLEFDLDALAAFCEQLG----EKRFRATQLFRWIHQKGQSDFAQMSDLAKSLREK 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L     +    ++ E +S DGT KWL       +GG   +ETV+IPE  RGTLC+SSQ G
Sbjct: 57  LAGRAVVRPLAVLSEHVSADGTVKWLF-----DVGGGNAVETVFIPENDRGTLCISSQAG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TG Q   RNL+  EI+ Q+  A   L    G  +          R ISN+V
Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTGEIVAQLWHAEHQLRARLGTTE----------RVISNVV 161

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N+  +  +L +  D  G   S+RR+T+STSG VP I R+ E+  V LA+SL
Sbjct: 162 MMGMGEPLQNYAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLREDCPVALAVSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++ LR+ LVP+NRKYP+  L++AC+ Y   +    ITFEY ML G+NDS   A  L+
Sbjct: 222 HAPTDALRDDLVPLNRKYPIAELLEACQRYLEAAPRDFITFEYCMLDGVNDSEAQARELL 281

Query: 304 KIL--KG----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
           +++  +G    +P KINLIPFNP+P      S    +  F++ +   G  + +R  RG D
Sbjct: 282 RLVGERGPVGRVPCKINLIPFNPFPASGLTRSSVARVQAFAQLLVDGGLVTTVRRTRGDD 341

Query: 358 ILAACGQLKSLSK-------RIPKVP 376
           I AACGQL    +       R+ + P
Sbjct: 342 IDAACGQLAGEVQDRTNAQARMRRAP 367


>gi|89098703|ref|ZP_01171585.1| hypothetical protein B14911_00900 [Bacillus sp. NRRL B-14911]
 gi|89086665|gb|EAR65784.1| hypothetical protein B14911_00900 [Bacillus sp. NRRL B-14911]
          Length = 362

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/368 (32%), Positives = 205/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K S+  +  +EL++ L +          R +QI++W+Y + +  F+ M+++S+ +R  L
Sbjct: 15  QKPSIYSLQLDELKDWLKEN----NEKAFRAAQIFEWLYQKRVASFEDMTNLSKALRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N+ F++   + + ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 71  NETFTLTTLKTLIQQTSSDGTIKFLFELHD-----GYSIETVLMRHEYGNSVCVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDE--------------TDERVSSVVI 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D++   L I +   GL+   R IT+STSG +P I +  +E + +  A+SL
Sbjct: 172 MGIGEPFDNYDHMMSFLRIINHDDGLNIGARHITVSTSGIIPKIYKFADENMQINFAVSL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PINR Y L  L++A R+Y   +   R++FEY +   +ND    A  L 
Sbjct: 232 HAPNTEIRSRLMPINRAYKLPDLMEAIRYYVDKTGR-RVSFEYGLFGSVNDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++KG+   +NLIP N  P  +Y+ + +  I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 SLIKGLKCHVNLIPVNYVPERDYVRTPKDQIFAFEKALKNRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|188576716|ref|YP_001913645.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188576907|ref|YP_001913836.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521168|gb|ACD59113.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521359|gb|ACD59304.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 393

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 163/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE             R R  Q+ KWI+ R + DF  M+D+ + +R  L
Sbjct: 13  RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAKL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +QH  ++ P +V +K S DGT KWLL        G   IETVYIP+K RGTLCVSSQVGC
Sbjct: 70  HQHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L CSFC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 127 GLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 175

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 176 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 235

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  L 
Sbjct: 236 AANDALRETLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 295

Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  RG
Sbjct: 296 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTIVRRTRG 355

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 356 DDIDAACGQLKGQV--MDRTRRQ 376


>gi|148979605|ref|ZP_01815610.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3]
 gi|145961690|gb|EDK26987.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3]
          Length = 380

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 143/387 (36%), Positives = 213/387 (55%), Gaps = 27/387 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+   R+ L +   +          R  Q+ KW+Y  G+ DF+ M++I++++R  L 
Sbjct: 5   KVNLLDFDRKGLRKFFTE---ELNEKAFRADQVMKWMYHFGVDDFENMNNINKKLREKLQ 61

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I+ P + + + S DGT KW +           ++ETVYIP+  R TLCVSSQVGC+
Sbjct: 62  RRCEIVAPVVSEAQHSSDGTIKWAMSVGD------QDVETVYIPDGDRATLCVSSQVGCA 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ Q+  A   +G          +   +  R I+N+VMM
Sbjct: 116 LECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKETGRRPITNVVMM 165

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  N+  SL I  D +G + SKRR+T+STSG V  + ++ + I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLMPSLEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHA 225

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303
            +++LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A  L 
Sbjct: 226 PNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++K  P KINLIPFNP+PG  Y       I  F + +    Y+  +R  RG DI AACG
Sbjct: 286 ELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMEYDYTVTVRKTRGDDIDAACG 345

Query: 364 QL------KSLSKRIPKVPRQEMQITG 384
           QL      ++   ++ K   +   + G
Sbjct: 346 QLVGDVIDRTKRTKMLKAASEANLVAG 372


>gi|256762921|ref|ZP_05503501.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256684172|gb|EEU23867.1| conserved hypothetical protein [Enterococcus faecalis T3]
          Length = 357

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 217/379 (57%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVTSFSEMSNISKSLMIL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    +              +  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG  P I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLAPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N  R+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|329767014|ref|ZP_08258542.1| ribosomal RNA large subunit methyltransferase N [Gemella
           haemolysans M341]
 gi|328837739|gb|EGF87364.1| ribosomal RNA large subunit methyltransferase N [Gemella
           haemolysans M341]
          Length = 377

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 123/372 (33%), Positives = 205/372 (55%), Gaps = 25/372 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +    K S+  +  ++LEE ++ IG      + R  QI+ W+Y + + DF  M ++ + +
Sbjct: 15  LKDFDKMSIYSLRLDQLEEYIVSIG----EKKFRAKQIYDWLYKKRVTDFSEMKNVPKSL 70

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           +  L + F I   + + ++ S DGT K+L     +       IE+V +  K   +LCV++
Sbjct: 71  QEKLAEEFEITTLKTIIKQESADGTMKFLFELQDKYT-----IESVLMKNKYGNSLCVTT 125

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C+FC +    L RNL A EI+ QVL  +                +   G +IS
Sbjct: 126 QVGCRIGCTFCASTLGGLKRNLDAGEIVSQVLKVQQE--------------LDKKGERIS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           +IV+MG+GEP  N+D +   + I +     +   R IT+STSG VP I     E++ +  
Sbjct: 172 SIVIMGIGEPFENYDEMMDFIRIVNSDESFNIGARHITVSTSGIVPKIYDFANEKVQINF 231

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +N+LR+ ++P+NR Y ++ L++A ++Y   +N  RITFEY ++  +ND    A
Sbjct: 232 AVSLHAPTNELRSKIMPVNRAYNIDKLMEALKYYQETTNR-RITFEYGLMGKVNDQKEHA 290

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L +I+KG+   +NLIP N  P   Y+ + + DI  F + +K++  +  IR  +G DI 
Sbjct: 291 EKLSEIIKGLNCHVNLIPINYVPERNYVRTSKSDIFAFEKILKKNKVNVTIRRTQGDDID 350

Query: 360 AACGQLKSLSKR 371
           AACGQL++  ++
Sbjct: 351 AACGQLRAKERK 362


>gi|303257588|ref|ZP_07343600.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
 gi|302859558|gb|EFL82637.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
          Length = 384

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 156/379 (41%), Positives = 219/379 (57%), Gaps = 16/379 (4%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+G   E L++    +G        R  Q+ +WI+ RG RDF  M+D+++  R  L
Sbjct: 3   QKVNLLGFDAEGLKKFCEDLG----EKPFRAKQLERWIHRRGARDFSEMTDLAKSFRAKL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PEI+ +K + DGTRKWLL      +G    +E VYIP+  RGTLCVSSQ GC
Sbjct: 59  EKVAEIRGPEIIRDKTAADGTRKWLL-----DVGSGNAVEMVYIPQDGRGTLCVSSQAGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC TG Q   RNL A EI+ Q+  A   L    G  D          R ISN+VM
Sbjct: 114 AMNCLFCSTGKQGFNRNLKASEIIGQLRHAEHTLRKDLGITD-------ENERVISNVVM 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N D V  SL +  D      S+RR+T+STSG V  + ++ E+  V LA+SLH
Sbjct: 167 MGMGEPLQNLDAVIPSLKLMLDDNAYGLSRRRVTVSTSGLVRQMDKLAEQCPVALAVSLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++P+NRK+PLE L+ AC+ Y   +    ITFEY+++ G+NDS   A  LI 
Sbjct: 227 APNNELRDKIMPVNRKHPLEQLLAACKRYLEHAPRDFITFEYILIGGVNDSLAQAKELIT 286

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +++ IP K NLIPFNP+PG     S  +++  F++ +  +G  + +R  RG DI AACGQ
Sbjct: 287 LVQDIPCKFNLIPFNPFPGSGLERSKPEEVKAFADRLNGAGIVTTVRKVRGDDIDAACGQ 346

Query: 365 LKSLSKRIPKVPRQEMQIT 383
           L    K   K+  +     
Sbjct: 347 LAGEIKDRTKLAEKRANRE 365


>gi|330446674|ref|ZP_08310326.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490865|dbj|GAA04823.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 373

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 150/386 (38%), Positives = 211/386 (54%), Gaps = 24/386 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  + K +L+   R+ L +   +          R  QI KWIY  G  DF  M++I++++
Sbjct: 1   MTTV-KINLLDFDRKGLRKYFAE---ELNEKPFRADQIMKWIYHFGCDDFDQMTNINKKL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  P + + + S DGT KW +R          ++ETVYIP++ R TLCVSS
Sbjct: 57  REKLKRVAEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPDEDRATLCVSS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+
Sbjct: 111 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKEIG----------VQKETGRRPIT 160

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++   I V LA
Sbjct: 161 NVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNIDVALA 220

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRD 298
           ISLHA +++LR+ ++PIN ++ +E  +DA R Y   +N    R+T EYV+L  +ND    
Sbjct: 221 ISLHAPTDELRSQIMPINNRWDIETFLDAVRRYVNSTNANRGRVTVEYVLLDHVNDDMEH 280

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L K+LK  PAKINLIPFNP+PG  Y       I  F + +    ++  +R  RG DI
Sbjct: 281 ARQLAKVLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDI 340

Query: 359 LAACGQLKSLSKRIPKVPRQEMQITG 384
            AACGQL      I +  R + ++  
Sbjct: 341 DAACGQLVGDV--IDRTKRTQAKLNA 364


>gi|289670467|ref|ZP_06491542.1| hypothetical protein XcampmN_18763 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 401

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 162/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE             R R  Q+ KWI+ R + DF  M+D+ + +R  L
Sbjct: 21  RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHRRYVTDFDQMTDLGKPLRAKL 77

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +QH  ++ P +V +K S DGT KWLL        G   IETVYIP+K RGTLCVSSQVGC
Sbjct: 78  HQHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 135 GLNCTFCSTATQGFNRNLTTAEIVGQVWVAARHLGN-----------VPHQQRRLTNVVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  L 
Sbjct: 244 AANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 303

Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  RG
Sbjct: 304 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 363

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 364 DDIDAACGQLKGQV--MDRTRRQ 384


>gi|229174530|ref|ZP_04302062.1| Radical SAM family enzyme [Bacillus cereus MM3]
 gi|228609090|gb|EEK66380.1| Radical SAM family enzyme [Bacillus cereus MM3]
          Length = 362

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 204/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + ++++  MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYDDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   G+    R +T+STSG VP I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+ + +LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HSANTELRSKLMPINRAYKLPDLMEAVKYYVNRTGR-RITFEYGLFGGENDQVEQAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|254369341|ref|ZP_04985353.1| radical SAM superfamily protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122291|gb|EDO66431.1| radical SAM superfamily protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 370

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 157/382 (41%), Positives = 229/382 (59%), Gaps = 22/382 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G+ ++ +E+  + IG      +    Q++KWI+ +G+ DF  M+D+ + +RH L
Sbjct: 4   DKVNLLGLNQKAIEDFFISIG----KKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  P++V  K+S DGT KWL+        G   +ETV+IPE+ RGTLCVSSQ+GC
Sbjct: 60  KDKAQITIPKVVFSKVSKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQIGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+ 
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVA 283

Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +LK    PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL           ++ ++  G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365


>gi|325294881|ref|YP_004281395.1| ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065329|gb|ADY73336.1| Ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 345

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 147/363 (40%), Positives = 215/363 (59%), Gaps = 26/363 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           +  +  EEL+  +  +G        R  QI +WIY + ++ F  M++IS+  R +L+++ 
Sbjct: 4   IKNLNFEELQNFVQSLGFEN----YRAKQIAQWIYKKRVKSFDEMTNISKAARKVLSENA 59

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I   ++V  + S DGT+K+L             +E+V+IPEK   TLCVS+QVGC + C
Sbjct: 60  KIDVLKLVKVEKSMDGTKKYLFELED-----GNRVESVFIPEKDWNTLCVSTQVGCPVGC 114

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC T      RNLTA EI+ Q +  +  +G+                ++ISN+V MGMG
Sbjct: 115 KFCLTAKDGFTRNLTAAEIVDQYIHVQRDVGE---------------DKRISNVVFMGMG 159

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247
           EP  NF+NVKK++ I +D   L  S R+IT+ST G VP I R+ +E+  V LAISLHA +
Sbjct: 160 EPFLNFENVKKAVEIMTDKNMLDLSTRKITISTVGVVPGIDRMAKEMNKVKLAISLHATT 219

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +++R  +VP+NRKYP+  ++ A R YP   N RRI  EYVML+G+NDS  DA  L+K++K
Sbjct: 220 DEVREKIVPLNRKYPISEIMAALRRYPA-DNIRRIMIEYVMLEGVNDSVEDAKRLVKLVK 278

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           GIP K+NLIPFN +PG  +  S ++    F + +     ++ IR  RG DI AACG L++
Sbjct: 279 GIPVKVNLIPFNSYPGAPFKPSSKEQTEKFQKVLWDHNIAAFIRDSRGQDISAACGMLRT 338

Query: 368 LSK 370
             K
Sbjct: 339 KEK 341


>gi|224476327|ref|YP_002633933.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|254807211|sp|B9DPM7|RLMN_STACT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|222420934|emb|CAL27748.1| putative Radical SAM family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 364

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 211/370 (57%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K+S+  +  EE+++ L++ G      + R  QI++W+Y + +     M+++S+++R +L
Sbjct: 17  DKQSIYSLRYEEMQDWLVEHG----QQKFRAKQIFQWLYEKRVDSIDEMTNLSKDLREVL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F++   E V ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 73  KDNFTMTTLETVVKQESRDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +               V+ +   ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------VLDATDERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +   GL+   R IT+STSG +P I    EE I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLKIVNYDNGLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++++R+ L+PINR Y ++ L++A ++Y   +N  RITFEY +  G+ND    A  L 
Sbjct: 234 HAANDEIRSKLMPINRAYSIDKLMEAIQYYQEKTNR-RITFEYGLFGGVNDQLTHARELA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +++ +   +NLIP N  P   Y+ + ++DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIQNLNCHVNLIPVNHVPERNYVKTPKEDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|239636303|ref|ZP_04677305.1| radical SAM enzyme, Cfr family [Staphylococcus warneri L37603]
 gi|239597658|gb|EEQ80153.1| radical SAM enzyme, Cfr family [Staphylococcus warneri L37603]
          Length = 364

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 207/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R LL
Sbjct: 17  EKQSIYSLRYDEMQNWLIEHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F++     V ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 73  KDNFAMTTLTTVVKQESRDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TEERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H   +++R+ L+PINR Y +E L++A  +Y   +N  RITFEY +  G+ND    A +L 
Sbjct: 234 HGAKDEVRSRLMPINRAYNVEKLMEAIEYYQEKTNR-RITFEYGLFGGVNDQLEHARDLA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|226313314|ref|YP_002773208.1| ribosomal RNA large subunit methyltransferase N [Brevibacillus
           brevis NBRC 100599]
 gi|226096262|dbj|BAH44704.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 356

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 204/367 (55%), Gaps = 25/367 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +  + ++E++E L+  G        R  QI+ W+YV+ +  F+ MS++S+E+R  L 
Sbjct: 10  KPLIYSLTQDEMKEWLVSAGDKA----FRAQQIFDWLYVKRVSSFEEMSNLSKELREKLA 65

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   + +  + S DGT K+L +           IETV +      ++CV++QVGC 
Sbjct: 66  DTFRMEPLKEITHQESQDGTIKFLFQLVD-----GHAIETVIMRHNYGNSICVTTQVGCR 120

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L RNL A EI+ QVL A+                + + G ++S++V+M
Sbjct: 121 IGCTFCASTLGGLKRNLDAGEIVSQVLTAQR--------------RLDAEGERVSHVVVM 166

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           G+GEP  NF+++   LS+ +D+ GL+   R IT+STSG VP I    E    V LAISLH
Sbjct: 167 GIGEPFENFESLMAFLSVINDNRGLNIGARHITVSTSGIVPKIYEFAERGGQVNLAISLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A + +LR+ L+PINR +PL  L++AC HY   +   RI+FEY +  G ND P  A  L +
Sbjct: 227 APNTELRSQLMPINRGFPLAKLMEACHHYINKTGR-RISFEYGLFGGKNDQPEHAEELAE 285

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++  +   +NLIP N  P  +Y+ + + +I  F   ++  G +  IR  +G DI AACGQ
Sbjct: 286 LIGDMLCHVNLIPVNYVPERDYVRTPRNEIFQFKRILEEKGINVTIRREQGSDIAAACGQ 345

Query: 365 LKSLSKR 371
           L++   +
Sbjct: 346 LRAQHAK 352


>gi|330999629|ref|ZP_08323338.1| 23S rRNA m2A2503 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|329574135|gb|EGG55711.1| 23S rRNA m2A2503 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 389

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 156/379 (41%), Positives = 219/379 (57%), Gaps = 16/379 (4%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+G   E L++    +G        R  Q+ +WI+ RG RDF  M+D+++  R  L
Sbjct: 8   QKVNLLGFDAEGLKKFCEDLG----EKPFRAKQLERWIHRRGARDFSEMTDLAKSFRAKL 63

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  PEI+ +K + DGTRKWLL      +G    +E VYIP+  RGTLCVSSQ GC
Sbjct: 64  EKVAEIRGPEIIRDKTAADGTRKWLL-----DVGSGNAVEMVYIPQDGRGTLCVSSQAGC 118

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC TG Q   RNL A EI+ Q+  A   L    G  D          R ISN+VM
Sbjct: 119 AMNCLFCSTGKQGFNRNLKASEIIGQLRHAEHTLRKDLGITD-------ENERVISNVVM 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N D V  SL +  D      S+RR+T+STSG V  + ++ E+  V LA+SLH
Sbjct: 172 MGMGEPLQNLDAVIPSLKLMLDDNAYGLSRRRVTVSTSGLVRQMDKLAEQCPVALAVSLH 231

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++P+NRK+PLE L+ AC+ Y   +    ITFEY+++ G+NDS   A  LI 
Sbjct: 232 APNNELRDKIMPVNRKHPLEQLLAACKRYLEHAPRDFITFEYILIGGVNDSLAQAKELIT 291

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +++ IP K NLIPFNP+PG     S  +++  F++ +  +G  + +R  RG DI AACGQ
Sbjct: 292 LVQDIPCKFNLIPFNPFPGSGLERSKPEEVKAFADRLNGAGIVTTVRKVRGDDIDAACGQ 351

Query: 365 LKSLSKRIPKVPRQEMQIT 383
           L    K   K+  +     
Sbjct: 352 LAGEIKDRTKLAEKRANRE 370


>gi|296136235|ref|YP_003643477.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
 gi|295796357|gb|ADG31147.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
          Length = 379

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 149/376 (39%), Positives = 214/376 (56%), Gaps = 20/376 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+   R+ L E   + G    H   R  Q+++W++ +G+ DF+ MSD+++ +R  L +
Sbjct: 8   TNLLQFDRDGLVEWFGRHG----HAAFRARQVFRWMHQKGVADFEAMSDLAKPLRQFLRE 63

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           H  I    ++ E+ S DGT KWL       +G    +E V+IPE  R TLCVSSQ GC++
Sbjct: 64  HAHIAALPVLSEQRSADGTVKWLF-----DVGQGNAVEAVFIPEAQRNTLCVSSQAGCAV 118

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL   EIL Q+  A   +    G        +P   R ISN+VMMG
Sbjct: 119 NCKFCSTGHQGFSRNLQTWEILAQLWHAEFTMRRELG--------LPGGERAISNVVMMG 170

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  +  +L    D  G   S+RR+T+STSG VP I R+ ++  V LA+SLHA 
Sbjct: 171 MGEPLQNYSALVPALRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCPVALAVSLHAP 230

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            + LR+ LVP+NRKYPL  L+ AC+ Y   +    ITFEY ML G+ND+P  A +L++++
Sbjct: 231 VDALRDELVPLNRKYPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALAEDLVRLV 290

Query: 307 K--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +   +  K NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI AACGQ
Sbjct: 291 RAAQVNCKFNLIPFNPFPQSGLKRSSAARVAAFAQVLLDAGLVTTVRKTRGDDIDAACGQ 350

Query: 365 LKSLSK-RIPKVPRQE 379
           L    + R  +V R +
Sbjct: 351 LAGEVQDRTRRVIRMQ 366


>gi|163941602|ref|YP_001646486.1| radical SAM protein [Bacillus weihenstephanensis KBAB4]
 gi|229013048|ref|ZP_04170213.1| Radical SAM family enzyme [Bacillus mycoides DSM 2048]
 gi|229061467|ref|ZP_04198812.1| Radical SAM family enzyme [Bacillus cereus AH603]
 gi|229168604|ref|ZP_04296327.1| Radical SAM family enzyme [Bacillus cereus AH621]
 gi|205829666|sp|A9VTA2|RLMN_BACWK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|163863799|gb|ABY44858.1| radical SAM enzyme, Cfr family [Bacillus weihenstephanensis KBAB4]
 gi|228615010|gb|EEK72112.1| Radical SAM family enzyme [Bacillus cereus AH621]
 gi|228717890|gb|EEL69538.1| Radical SAM family enzyme [Bacillus cereus AH603]
 gi|228748302|gb|EEL98162.1| Radical SAM family enzyme [Bacillus mycoides DSM 2048]
          Length = 362

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 205/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++++ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLAKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   G+    R +T+STSG VP I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAANTEIRSKLMPINRAYKLPDLMEAVKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|229019062|ref|ZP_04175900.1| Radical SAM family enzyme [Bacillus cereus AH1273]
 gi|229025306|ref|ZP_04181725.1| Radical SAM family enzyme [Bacillus cereus AH1272]
 gi|228735997|gb|EEL86573.1| Radical SAM family enzyme [Bacillus cereus AH1272]
 gi|228742230|gb|EEL92392.1| Radical SAM family enzyme [Bacillus cereus AH1273]
          Length = 362

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 205/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   G+    R +T+STSG VP I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+ + +LR+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HSANTELRSKLMPINRAYKLPDLMEAVKYYVNRTGR-RITFEYGLFGGENDQVEQAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|119471078|ref|ZP_01613637.1| predicted enzyme [Alteromonadales bacterium TW-7]
 gi|119445918|gb|EAW27199.1| predicted enzyme [Alteromonadales bacterium TW-7]
          Length = 377

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 164/379 (43%), Positives = 225/379 (59%), Gaps = 21/379 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ + R+ + E  +  G        R  Q+ KWIY  G+ +F  MS+++++++  L
Sbjct: 6   KKINLLDLNRDAMRELFVSFG----EKPFRGDQVMKWIYHFGVDNFDEMSNVNKKLKEKL 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I+ PEI   + + DGT K+ L        G  E+E V+IPEK R TLCVSSQVGC
Sbjct: 62  KAECEIVAPEISVRQQASDGTIKYALVLE-----GGQEVEAVWIPEKERATLCVSSQVGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC T  Q   RNL   EI+ QV      +G          +   S  R ++N+VM
Sbjct: 117 ALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG----------LDGNSEKRPVTNVVM 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ +  D  G   SKRR+TLSTSG VP +  + E+I V LAISLH
Sbjct: 167 MGMGEPLLNVKNVVPAMELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALAISLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303
           A  N LR+ILVPIN+KYP+E  + ACR Y   S A + +T EYVML G+NDS   A  L+
Sbjct: 227 APDNALRDILVPINKKYPIEEFLAACRRYIDGSKANKDVTIEYVMLNGVNDSTDQAHELV 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K LKG P+K+NLIPFNP+PG EY  S    I  FS+ ++ +G +  +R  RG DI AACG
Sbjct: 287 KTLKGTPSKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRTRGDDIDAACG 346

Query: 364 QLKS-LSKRIPKVPRQEMQ 381
           QL   +  R  ++ +++M+
Sbjct: 347 QLAGDVVDRTKRMAKKKMR 365


>gi|294340470|emb|CAZ88851.1| putative radical SAM enzyme, Cfr family, yfgB [Thiomonas sp. 3As]
          Length = 379

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 149/376 (39%), Positives = 214/376 (56%), Gaps = 20/376 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+   R+ L E   + G    H   R  Q+++W++ +G+ DF+ MSD+++ +R  L +
Sbjct: 8   TNLLQFDRDGLVEWFGRHG----HAAFRARQVFRWMHQKGVADFEAMSDLAKPLRQFLRE 63

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           H  I    ++ E+ S DGT KWL       +G    +E V+IPE  R TLCVSSQ GC++
Sbjct: 64  HAHIAALPVLSEQRSADGTVKWLF-----DVGQGNAVEAVFIPEAQRNTLCVSSQAGCAV 118

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL   EIL Q+  A   +    G        +P   R ISN+VMMG
Sbjct: 119 NCKFCSTGHQGFSRNLQTWEILAQLWHAEFTMRRELG--------LPGGERAISNVVMMG 170

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  +  +L    D  G   S+RR+T+STSG VP I R+ ++  V LA+SLHA 
Sbjct: 171 MGEPLQNYSALVPALRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCPVALAVSLHAP 230

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            + LR+ LVP+NRKYPL  L+ AC+ Y   +    ITFEY ML G+ND+P  A +L++++
Sbjct: 231 VDALRDELVPLNRKYPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALAQDLVRLV 290

Query: 307 K--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +   +  K NLIPFNP+P      S    +  F++ +  +G  + +R  RG DI AACGQ
Sbjct: 291 RAAQVNCKFNLIPFNPFPQSGLKRSSAARVAAFAQVLLDAGLVTTVRKTRGDDIDAACGQ 350

Query: 365 LKSLSK-RIPKVPRQE 379
           L    + R  +V R +
Sbjct: 351 LAGEVQDRTRRVIRMQ 366


>gi|227552455|ref|ZP_03982504.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330]
 gi|257888305|ref|ZP_05667958.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,141,733]
 gi|257896805|ref|ZP_05676458.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium Com12]
 gi|257899742|ref|ZP_05679395.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium Com15]
 gi|293378566|ref|ZP_06624729.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1]
 gi|293573136|ref|ZP_06684073.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980]
 gi|227178412|gb|EEI59384.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330]
 gi|257824359|gb|EEV51291.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium 1,141,733]
 gi|257833370|gb|EEV59791.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium Com12]
 gi|257837654|gb|EEV62728.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecium Com15]
 gi|291606774|gb|EFF36159.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980]
 gi|292642895|gb|EFF61042.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1]
          Length = 355

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 218/377 (57%), Gaps = 26/377 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+S+ G+  EEL    ++ G      + R +Q+W+W+Y + + +F  M+++S+++   
Sbjct: 1   MEKQSIYGLTNEELINWFIENG----EKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEK 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+ HF I   + +  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LSAHFIINPLKQMVVQEASDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q+++ +    +             ++G ++S++V
Sbjct: 112 CNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDE------------RNLGERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV   L I +D+ GL+   R IT+STSG    I       + V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L++A   Y   +N  RITFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNR-RITFEYIMLNQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +LK     A +NLIP+NP    + Y  S + D++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLKDKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKNGVNCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVP 376
           AACGQL+S   +     
Sbjct: 339 AACGQLRSKQMKKTAAK 355


>gi|229134672|ref|ZP_04263481.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST196]
 gi|228648718|gb|EEL04744.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST196]
          Length = 362

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 205/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++++ +R  L
Sbjct: 15  KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLAKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+DN+   L I +   G+    R +T+STSG VP I +  EE + +  AISL
Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PINR Y L  L++A ++Y   +   RITFEY +  G ND    A  L 
Sbjct: 232 HAANTEIRSKLMPINRAYKLPDLMEAVKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACG
Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|323440993|gb|EGA98700.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus O11]
          Length = 364

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R LL
Sbjct: 17  DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F++     V ++ S DGT K+L             IETV +      ++CV++QVGC
Sbjct: 73  KDNFTVTSLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +                + +   ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    +E I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  +++R+ L+PINR Y +E LI+A ++Y   +N  R+TFEY +  G+ND    A  L 
Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|328553529|gb|AEB24021.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           amyloliquefaciens TA208]
 gi|328911679|gb|AEB63275.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus
           amyloliquefaciens LL3]
          Length = 363

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 201/368 (54%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ S+     +E+++ L + G        R +QI++W+Y + +  F  M+++S+ +R  L
Sbjct: 16  EQPSIYSFELDEIKQWLTENG----EKPFRAAQIFEWLYEKRVSSFDEMTNLSKSLREKL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F +   +   ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 72  ESNFVMTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  NF+ +   L I +   GL+   R IT+STSG +P I    ++ + +  AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYDFADQKMQINFAISL 232

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PIN+ Y L  L++A ++Y   +   RI+FEY +  G+ND    A  L 
Sbjct: 233 HAPNTEIRSRLMPINKAYKLPDLMEAVKYYIEKTGR-RISFEYGLFGGVNDQVEHAEELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG+   +NLIP N  P  +Y+ + +  I  F + +K  G +  IR  +G DI AACG
Sbjct: 292 ELLKGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 352 QLRAKERQ 359


>gi|323491629|ref|ZP_08096808.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           brasiliensis LMG 20546]
 gi|323314205|gb|EGA67290.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           brasiliensis LMG 20546]
          Length = 375

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 144/384 (37%), Positives = 207/384 (53%), Gaps = 23/384 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ + +              R  Q+ KWIY  G+ +F  M++I++++R 
Sbjct: 2   TTEKINLLDFDRQGMRKFFADQ---LGEKAFRADQVMKWIYHFGVDNFDDMTNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW ++          ++ETVYIPE+ R TLCVSSQV
Sbjct: 59  KLQHRCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEEDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+NI
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNI 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++K  P KINLIPFNP+PG  Y       I  F + + +  ++  +R  RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
           ACGQL      I +  R  M    
Sbjct: 343 ACGQLVGDV--IDRTKRTAMNKAA 364


>gi|77362060|ref|YP_341634.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123757670|sp|Q3ID16|RLMN_PSEHT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|76876971|emb|CAI89188.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster
           domain [Pseudoalteromonas haloplanktis TAC125]
          Length = 376

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 166/383 (43%), Positives = 226/383 (59%), Gaps = 21/383 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   KK +L+ + RE + E     G        R+ Q+ KWIY  G+ +F  MS++++++
Sbjct: 1   MTEQKKINLLDLNREGMRELFASFG----EKPFRSDQVMKWIYHFGVDNFDDMSNVNKKL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           +  L     I+ PEI   + + DGT K+ L        G  E+E V+IPEK R TLCVSS
Sbjct: 57  KEKLKAECEIVAPEISVRQQAKDGTIKYALVLE-----GGQEVEAVWIPEKERATLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C+FC T  Q   RNL   EI+ QV      +G          +   S  R ++
Sbjct: 112 QVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG----------LDGHSEKRPVT 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  NV  ++ +  D  G   SKRR+TLSTSG VP +  + E+I V LA
Sbjct: 162 NVVMMGMGEPLLNVKNVVPAMELMLDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299
           ISLHA  N LR+ILVP+N+KYP+E  + ACR Y   S A + +T EYVML GINDS   A
Sbjct: 222 ISLHAPDNALRDILVPVNKKYPIEEFLAACRRYIDGSKANKDVTVEYVMLNGINDSTDQA 281

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L++ LKG P K+NLIPFNP+PG EY  S    I  FS+ ++ +G +  +R PRG DI 
Sbjct: 282 HALVQTLKGTPCKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRPRGDDID 341

Query: 360 AACGQLKS-LSKRIPKVPRQEMQ 381
           AACGQL   +  R  ++ +++M+
Sbjct: 342 AACGQLAGDVVDRTKRLAKKKMR 364


>gi|81587943|sp|Q8DEZ6|RLMN_VIBVU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 374

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 148/379 (39%), Positives = 212/379 (55%), Gaps = 25/379 (6%)

Query: 5   KKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K +L+   R+ + +    ++G        R  Q+ KWIY  G+ DF  M++I++++R  
Sbjct: 4   EKINLLVFDRKGMRDLFAQELG----EKAFRADQVMKWIYHFGVDDFDNMTNINKQLREK 59

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q   I+ P + + + S DGT KW +R          ++ETVYIPE+ R TLCVSSQVG
Sbjct: 60  LKQKCEIVAPVVSEAQHSSDGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQVG 113

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+V
Sbjct: 114 CALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREVG----------LEKETGRRPITNVV 163

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAISL
Sbjct: 164 MMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISL 223

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301
           HA ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A  
Sbjct: 224 HAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHE 283

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L +++K  P KINLIPFNP+PG  Y       I  F + + +  ++  IR  RG DI AA
Sbjct: 284 LAQLMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAA 343

Query: 362 CGQLKSLSKRIPKVPRQEM 380
           CGQL      I +  R  M
Sbjct: 344 CGQLVGDV--IDRTKRTAM 360


>gi|157692255|ref|YP_001486717.1| Fe-S-cluster redox protein [Bacillus pumilus SAFR-032]
 gi|205829664|sp|A8FD40|RLMN_BACP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157681013|gb|ABV62157.1| possible Fe-S-cluster redox protein [Bacillus pumilus SAFR-032]
          Length = 360

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 200/366 (54%), Gaps = 25/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+      E++E L +    Q     R +QI++W+Y + +  F  MS++S+E+R  L  
Sbjct: 15  PSIYSFELHEMKEWLKE----QDEKPFRAAQIFEWLYEKRVTSFDAMSNLSKELREKLKA 70

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F+I   + V ++ S DGT K+L             IETV +  +   ++CV++QVGC +
Sbjct: 71  QFAITTLKTVIKQTSQDGTIKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGCRI 125

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L RNL A EI+ QVL  +  L +                 ++S++V+MG
Sbjct: 126 GCTFCASTLGGLKRNLEAGEIVAQVLKVQQALDE--------------TDERVSSVVIMG 171

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEP  NF+ +   L I +   GL+   R IT+STSG +P I +  +E + +  A+SLHA
Sbjct: 172 IGEPFDNFEEMLAFLKIINHDNGLNIGARHITVSTSGIIPKIYQFADEQMQINFAVSLHA 231

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + ++R+ L+PIN+ Y L  L++A  +Y   +   R++FEY +  G+ND    A  L  +
Sbjct: 232 PNTEIRSRLMPINKAYKLPKLMEAIEYYIQKTGR-RVSFEYGLFGGVNDQVHHAEELADL 290

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGI   +NLIP N  P  +Y+ + ++ I  F + +K  G +  IR  +G DI AACGQL
Sbjct: 291 LKGIKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKERGVNVTIRREQGHDIDAACGQL 350

Query: 366 KSLSKR 371
           ++  ++
Sbjct: 351 RAKERQ 356


>gi|134094488|ref|YP_001099563.1| hypothetical protein HEAR1261 [Herminiimonas arsenicoxydans]
 gi|205829776|sp|A4G4J9|RLMN_HERAR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|133738391|emb|CAL61436.1| putative Fe-S-cluster redox enzyme [Herminiimonas arsenicoxydans]
          Length = 386

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 141/365 (38%), Positives = 210/365 (57%), Gaps = 14/365 (3%)

Query: 14  REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73
             +L     ++G        R  Q+ +WI+  G  DF  M+D+++ +R  L     I  P
Sbjct: 13  PAQLIAYCGELG----EKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLKTRAMIAAP 68

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
            ++ +  S DGTRKWL+      +G    +ETV+IPE++RGTLC+S+Q GC++ C FC T
Sbjct: 69  AVISDHTSSDGTRKWLI-----DVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCST 123

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G Q   RNL+  EI+ Q+ +A     +F           P   R+I+N+VMMGMGEPL N
Sbjct: 124 GKQGFNRNLSVGEIIGQLWMA-----EFELRRTKGIEPGPKGERQITNVVMMGMGEPLLN 178

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253
           ++    +L +  D      S+RR+TLSTSG VP I ++ ++  V LA+SLHA ++ LR+ 
Sbjct: 179 YEPTVTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDG 238

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           LVP+N+KYPL+ L+ AC+ Y   +    +TFEY ML G+NDS + A  L+ +++ +P K 
Sbjct: 239 LVPLNKKYPLQELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDQHARELLTLVRDVPCKF 298

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
           NLIPFNP+P      S+   I  F++ +   G  + IR  RG DI AACGQL    +   
Sbjct: 299 NLIPFNPFPESGLTRSNNPRIKAFAQVLMDGGLVTTIRKTRGDDIDAACGQLAGEVQDRT 358

Query: 374 KVPRQ 378
           +V  +
Sbjct: 359 RVQDR 363


>gi|269962413|ref|ZP_06176763.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832909|gb|EEZ87018.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 375

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 141/365 (38%), Positives = 203/365 (55%), Gaps = 21/365 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ + +   +          R  Q+ KWIY  G+ DF  M++I++++R 
Sbjct: 2   TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW ++          ++ETVYIPE  R TLCVSSQV
Sbjct: 59  KLQHKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++K  P KINLIPFNP+PG  Y       I  F + + +  ++  +R  RG DI A
Sbjct: 283 ELAELMKETPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYDHTVTVRKTRGDDIDA 342

Query: 361 ACGQL 365
           ACGQL
Sbjct: 343 ACGQL 347


>gi|89901088|ref|YP_523559.1| hypothetical protein Rfer_2310 [Rhodoferax ferrireducens T118]
 gi|123397164|sp|Q21W25|RLMN_RHOFD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|89345825|gb|ABD70028.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
          Length = 382

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 143/379 (37%), Positives = 211/379 (55%), Gaps = 24/379 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+    + L     ++G      R R  Q+++WI+ +G  +F  MSD+++ +R  L   
Sbjct: 4   NLLDFDLDGLAVFCERLG----EKRYRAVQLFRWIHQKGASNFDDMSDLAKSLREKLKVS 59

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             +  P+++ + IS DGT KWL       +GG   +E V+IPE+ RGTLC+SSQ GC++ 
Sbjct: 60  AQVKAPDLISQHISSDGTIKWLF-----DVGGGDAVEAVFIPEEDRGTLCISSQAGCAMG 114

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG Q   RNL   EI+ Q+  A   L      ++          R ISN+VMMGM
Sbjct: 115 CRFCSTGHQGFSRNLKTGEIIAQLWFAEHFLRKHLQRDE----------RVISNVVMMGM 164

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N+  +  +L    D  G   S+RR+T+STSG VP + R+  +  V LA+SLHA +
Sbjct: 165 GEPLQNYAELVPALRAMLDDHGYGLSRRRVTVSTSGVVPMMDRLARDCPVALAVSLHAPN 224

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           + LR+ LVP+N+KY L  L++AC  Y   +    ITFEY ML+ +ND P  A  L+++++
Sbjct: 225 DLLRDDLVPLNKKYSLAELLNACNRYLAYAPRDFITFEYCMLEDVNDQPEHAQQLVRLVQ 284

Query: 308 -----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
                G+  K NLIPFNP+P      S  + I  F++ +  +G  + IR  RG DI AAC
Sbjct: 285 HYSSGGVWCKFNLIPFNPFPASGLTRSTPERIQAFAKILSDAGIVTTIRKTRGDDIDAAC 344

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQL    K   +V  +  +
Sbjct: 345 GQLAGEVKDRTRVGERIAR 363


>gi|323499824|ref|ZP_08104783.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis
           DSM 21326]
 gi|323315065|gb|EGA68117.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis
           DSM 21326]
          Length = 374

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 142/365 (38%), Positives = 204/365 (55%), Gaps = 21/365 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ L +              R  Q+ KWIY  G+ +F  M++I++++R 
Sbjct: 2   TTEKINLLDFDRQGLRKFFAD---ELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L +   I+ P + + + S DGT KW ++          ++ETVYIPE  R TLCVSSQV
Sbjct: 59  KLQRRCEIVAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L +  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ +E  + + R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDKLRSDIMPINDRWDIEDFLASVRRYIQSSNANRGKVTVEYVLLDHVNDDMDHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L ++LK  P KINLIPFNP+PG  Y       I  F + + +  ++  +R  RG DI A
Sbjct: 283 ELAELLKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342

Query: 361 ACGQL 365
           ACGQL
Sbjct: 343 ACGQL 347


>gi|154685991|ref|YP_001421152.1| YloN [Bacillus amyloliquefaciens FZB42]
 gi|205829638|sp|A7Z4J5|RLMN_BACA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|154351842|gb|ABS73921.1| YloN [Bacillus amyloliquefaciens FZB42]
          Length = 363

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 200/368 (54%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ S+     +E+++ L + G        R +QI++W+Y + +  F  M+++S+ +R  L
Sbjct: 16  EQPSIYSFELDEIKQWLTENG----EKPFRAAQIFEWLYEKRVSSFDEMTNLSKSLREKL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F +   +   ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 72  ESNFVLTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  NF+ +   L I +   GL+   R IT+STSG +P I    ++ + +  AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYDFADQKMQINFAISL 232

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PIN+ Y L  L++A ++Y   +   RI+FEY +  G+ND    A  L 
Sbjct: 233 HAPNTEIRSRLMPINKAYKLPDLMEAVKYYIEKTGR-RISFEYGLFGGVNDQVEHAEELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK +   +NLIP N  P  +Y+ + +  I  F + +K  G +  IR  +G DI AACG
Sbjct: 292 ELLKDVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 352 QLRAKERQ 359


>gi|315161444|gb|EFU05461.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0645]
          Length = 357

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 218/379 (57%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    +              +  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N  R+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMVAIDEYIEKNNR-RVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|296331150|ref|ZP_06873624.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305674306|ref|YP_003865978.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151794|gb|EFG92669.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412550|gb|ADM37669.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 363

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 202/368 (54%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ S+     +E+++ L   G        R +QI++W+Y + +  F+ M+++S+++R  L
Sbjct: 16  ERPSIYSFELDEIKQWLTDNG----EKPFRAAQIFEWLYEKRVSSFEEMTNLSKDLREKL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + HF +   +   ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 72  SAHFEMTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +  L +                 ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVLKVQKALDE--------------TDERVSSVVI 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  NF+ +   L I +   GL+   R IT+STSG +P I    ++ + +  AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYEFADQQMQINFAISL 232

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PINR Y L  L++A ++Y   +   RI+FEY +  G+ND    A  L 
Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKTGR-RISFEYGLFGGVNDQVEHAEELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L+GI   +NLIP N  P  +Y+ + +  I  F + +K  G +  IR  +G DI AACG
Sbjct: 292 DLLEGIKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 352 QLRAKERQ 359


>gi|296133296|ref|YP_003640543.1| radical SAM enzyme, Cfr family [Thermincola sp. JR]
 gi|296031874|gb|ADG82642.1| radical SAM enzyme, Cfr family [Thermincola potens JR]
          Length = 356

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 124/363 (34%), Positives = 192/363 (52%), Gaps = 28/363 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L  +  EEL   L+++G        R  QI  W++ +G+ +   M+++   +R  L++
Sbjct: 5   TNLKDLSLEELTAFLIELG----EKPFRAKQIADWVFKKGVAEIADMTNLPLSLRERLSK 60

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I   EI+ E+ S DGT K+L             +ETV++      ++CVS+QVGC +
Sbjct: 61  TAYIGRLEIMKEQQSRDGTTKYLFEL-----ADGNTVETVFLKHNYGNSVCVSTQVGCKM 115

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +      RNL+  EI  QVL                        +++S++V+MG
Sbjct: 116 GCLFCASTIGGFYRNLSPGEIYDQVLRIEQ-----------------DKKKRVSSVVIMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N++ V K + + +    L+   R ITLST G VP I ++ EE + + L++SLHA
Sbjct: 159 SGEPLDNYEAVLKFIRLITAPYALNVGMRHITLSTCGLVPQIYKLAEEKLALTLSVSLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+LRN L+P+NRKYPLE LI AC  Y   +   RITFEY ++K +NDS   A  L ++
Sbjct: 219 PNNELRNKLMPVNRKYPLEELIPACHEYIKKTGR-RITFEYTLIKDVNDSQGHAEELARL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KG+   +NLIP NP     +     + +  F   ++R+   + +R   G DI AACGQL
Sbjct: 278 IKGMLCHVNLIPVNPVAERRWYRPSTETVKRFQTILERNRVPATVRREMGTDIDAACGQL 337

Query: 366 KSL 368
           +  
Sbjct: 338 RRK 340


>gi|70726698|ref|YP_253612.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           haemolyticus JCSC1435]
 gi|123776132|sp|Q4L5R9|RLMN_STAHJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|68447422|dbj|BAE05006.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 364

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 208/370 (56%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+S+  +  +E++E L++ G      + R  QI++W+Y + +     M+++S+++R +L
Sbjct: 17  EKQSIYSLRYDEMQEWLVEHG----QQKFRAKQIFEWLYQKRVDSIDDMTNLSKDLRQVL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F++     V ++ S DGT K+L             IETV +      ++CV++QVGC
Sbjct: 73  KDNFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +                + +   ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATDERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  +++R+ L+PINR Y ++ L++A ++Y   +N  R+TFEY +  G+ND    A +L 
Sbjct: 234 HAAKDEIRSKLMPINRAYHVDKLMEAIKYYQEKTNR-RVTFEYGLFGGVNDQLEHARDLA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|153873084|ref|ZP_02001783.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152070449|gb|EDN68216.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 358

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 155/355 (43%), Positives = 207/355 (58%), Gaps = 15/355 (4%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           +L     ++G        R +Q+ KWI+ + + DF  M+++S+ +R  L +   I  P++
Sbjct: 2   DLPPFFEELG----EKPFRATQVMKWIHQQAVLDFDAMTNLSKTLRQRLKEIACISLPQV 57

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
              +IS D TRKWLL+           IE V+IPE  RGTLC+SSQ+GC+L CSFC T  
Sbjct: 58  YKTQISQDDTRKWLLQL-----DNGNSIEMVFIPEDGRGTLCISSQIGCALDCSFCATAQ 112

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
           Q   RNL   EI+ Q+ LA   L               +  R ISN+VMMGMGEPL N +
Sbjct: 113 QGFNRNLNTAEIIAQLWLAEHQLCSTKDDRP------KNYQRTISNVVMMGMGEPLTNLN 166

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255
           NV K++ I  D  G   S +RITLST+G VP   R+ E+  V LA+SLHA  + LR+ LV
Sbjct: 167 NVIKAIKIMKDDFGYGLSWQRITLSTAGIVPAFKRLKEQCPVSLAVSLHAPDDALRDQLV 226

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
           PIN+KYP+  L+ ACR Y      R ITFEY+MLK INDS   A  L+K+++GIPAK+NL
Sbjct: 227 PINKKYPINELLAACRAYVKGEPRRTITFEYIMLKNINDSQSHAHALVKLIQGIPAKVNL 286

Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           IPFN +P   Y  S  K I  F + + ++G  +  R  RG DI AACGQL    +
Sbjct: 287 IPFNTFPDTPYQSSSIKTIDDFRDILLKAGLITITRKTRGDDIDAACGQLAGKVR 341


>gi|90579368|ref|ZP_01235178.1| hypothetical protein VAS14_06663 [Vibrio angustum S14]
 gi|90440201|gb|EAS65382.1| hypothetical protein VAS14_06663 [Vibrio angustum S14]
          Length = 373

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 150/384 (39%), Positives = 210/384 (54%), Gaps = 24/384 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  + K +L+   R+ L +   +          R  QI KWIY  G  DF  M++I++++
Sbjct: 1   MTTV-KINLLDFDRKGLRKYFAE---ELNEKPFRADQIMKWIYHFGCDDFDQMTNINKKL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  P + + + S DGT KW +R          ++ETVYIP++ R TLCVSS
Sbjct: 57  REKLKRVAEIRAPYVSEAQHSTDGTIKWAMRVGD------QDVETVYIPDEDRATLCVSS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+
Sbjct: 111 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKEIG----------VQKETGRRPIT 160

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIVMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++   I V LA
Sbjct: 161 NIVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNIDVALA 220

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRD 298
           ISLHA +++LR+ ++PIN ++ +E  +D  R Y   +N    R+T EYV+L  +ND    
Sbjct: 221 ISLHAPTDELRSQIMPINDRWNIEAFLDVVRRYVNSTNANRGRVTVEYVLLDHVNDDMEH 280

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L K+LK  PAKINLIPFNP+PG  Y       I  F + +    ++  +R  RG DI
Sbjct: 281 ARQLAKVLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDI 340

Query: 359 LAACGQLKSLSKRIPKVPRQEMQI 382
            AACGQL      I +  R + ++
Sbjct: 341 DAACGQLVGDV--IDRTKRTQAKL 362


>gi|205829948|sp|Q3BTW5|RLMN_XANC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 401

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 163/383 (42%), Positives = 226/383 (59%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE             R R  Q+ KWI+ R + DF  M+D+ + +R  L
Sbjct: 21  RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLCKALRAKL 77

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVGC
Sbjct: 78  HQHAEVLVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 135 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  L 
Sbjct: 244 AANDTLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 303

Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  RG
Sbjct: 304 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 363

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 364 DDIDAACGQLKGQV--MDRTRRQ 384


>gi|28897379|ref|NP_796984.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153838534|ref|ZP_01991201.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ3810]
 gi|260363554|ref|ZP_05776383.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus K5030]
 gi|260876339|ref|ZP_05888694.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AN-5034]
 gi|260898610|ref|ZP_05907106.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus Peru-466]
 gi|260899290|ref|ZP_05907685.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ4037]
 gi|81728415|sp|Q87S19|RLMN_VIBPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|28805591|dbj|BAC58868.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748049|gb|EDM58908.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ3810]
 gi|308086920|gb|EFO36615.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus Peru-466]
 gi|308092880|gb|EFO42575.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AN-5034]
 gi|308106603|gb|EFO44143.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ4037]
 gi|308113028|gb|EFO50568.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus K5030]
          Length = 375

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 141/365 (38%), Positives = 204/365 (55%), Gaps = 21/365 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ + +   +          R  Q+ KWIY  G+ DF  M++I++++R 
Sbjct: 2   TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW ++          ++ETVYIPE+ R TLCVSSQV
Sbjct: 59  KLQHKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEEDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMGHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++K  P KINLIPFNP+PG  Y       I  F + + +  ++  +R  RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342

Query: 361 ACGQL 365
           ACGQL
Sbjct: 343 ACGQL 347


>gi|254506728|ref|ZP_05118868.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16]
 gi|219550309|gb|EED27294.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16]
          Length = 374

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 144/380 (37%), Positives = 206/380 (54%), Gaps = 23/380 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ + +              R  Q+ KWIY  G+ +F  M++I++++R 
Sbjct: 2   TTEKINLLDFDRQGMRKFFAD---ELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW ++          ++ETVYIPE  R TLCVSSQV
Sbjct: 59  KLQHRCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++K  P KINLIPFNP+PG  Y       I  F + + +  ++  IR  RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQEM 380
           ACGQL      I +  R  M
Sbjct: 343 ACGQLVGDV--IDRTKRTAM 360


>gi|146329686|ref|YP_001209425.1| hypothetical protein DNO_0514 [Dichelobacter nodosus VCS1703A]
 gi|205829748|sp|A5EVN1|RLMN_DICNV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146233156|gb|ABQ14134.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
          Length = 364

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 153/377 (40%), Positives = 221/377 (58%), Gaps = 20/377 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L     + L +  +  G        R  Q+ KW+Y   + DF+ M+D+S+++R 
Sbjct: 1   MTEKINLFDYTPKALADWFVAQG----EQPFRAKQVLKWLYHERVYDFERMTDLSKKLRA 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +L++   +I P+++ +K + DGTRKW+ ++          IE V+IPE  RGTLC+SSQ 
Sbjct: 57  MLSEKACVILPQVIADKTARDGTRKWVFQYAC-----TNSIEAVFIPEDDRGTLCISSQA 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T      RNLT  EI++QV LA+ L+                  R I+N+
Sbjct: 112 GCALACPFCSTARAGFNRNLTTGEIVVQVWLAKELV----------HCERNGNSRLITNV 161

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V+MGMGEPL NF+ V  +  I     G   SKRR+TLSTSG VP I ++ E   + LA+S
Sbjct: 162 VLMGMGEPLINFNQVLPATEIFMSDWGFGLSKRRVTLSTSGVVPAIHKLREVTDLSLAVS 221

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALN 301
           LHA +++LRN +VPIN++Y L+ LI+AC  Y   +     IT+EYVMLKG+ND+   A  
Sbjct: 222 LHAPNDELRNKIVPINQRYGLKALIEACALYAENNKQHGGITWEYVMLKGVNDTLEHAQQ 281

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +L+ +P KINLIPFN +P   + CS  +DIV F + ++++GY + IR  RG DI AA
Sbjct: 282 LADLLRNVPGKINLIPFNEFPNSPFQCSSWEDIVRFQQFLQKAGYIATIRKTRGDDIDAA 341

Query: 362 CGQLKSLSKRIPKVPRQ 378
           CGQL        +  RQ
Sbjct: 342 CGQLVGRVNDRIRRERQ 358


>gi|197336065|ref|YP_002155383.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11]
 gi|254807222|sp|B5FAW9|RLMN_VIBFM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|197317555|gb|ACH67002.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11]
          Length = 372

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 145/381 (38%), Positives = 208/381 (54%), Gaps = 23/381 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+   R+ L     +          R  Q+ KW+Y  G  DF  M++I++++R  L 
Sbjct: 5   KINLLDFDRKGLRAFFSE---ELGEKAFRADQVMKWMYHFGCDDFDQMNNINKKLREKLK 61

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  P + + + S DGT KW ++          ++ETVYIP+  R TLCVSSQVGC+
Sbjct: 62  NKCEIRAPYVSEAQHSSDGTIKWAMKVGD------QDVETVYIPDGDRATLCVSSQVGCA 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ Q+  A   +G          +   +  R I+N+VMM
Sbjct: 116 LECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKETGRRPITNVVMM 165

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  N+  +L I  D +G + SKRR+T+STSG V  + ++  +I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLIPALEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHA 225

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
            +++LR+ ++PIN ++ ++  + + R Y   SN    R+T EYV+L  +ND    A  L 
Sbjct: 226 PTDELRSQIMPINDRWDIDAFLASVRRYIASSNANRGRVTVEYVLLDHVNDDMDHARQLA 285

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  PAKINLIPFNP+PG  Y       I  F + +    Y+  IR  RG DI AACG
Sbjct: 286 ELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDYTVTIRKTRGDDIDAACG 345

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QL      I +  R +++  G
Sbjct: 346 QLVGDV--IDRTKRTKVKQQG 364


>gi|62260668|gb|AAX77923.1| unknown protein [synthetic construct]
          Length = 405

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 157/388 (40%), Positives = 230/388 (59%), Gaps = 24/388 (6%)

Query: 1   MNFLK--KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
           M  ++  K +L+G+ ++ +E+  + IG      +    Q++KWI+ +G+ DF  M+D+ +
Sbjct: 24  MLEMQQDKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGK 79

Query: 59  EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
            +RH L +   I  P++V  K S DGT KWL+        G   +ETV+I  + RGTLCV
Sbjct: 80  NLRHKLKEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFILAEGRGTLCV 133

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC+L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            
Sbjct: 134 SSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT---------- 183

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           ++NIVMMGMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV 
Sbjct: 184 VTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVS 243

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  D
Sbjct: 244 LAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSD 303

Query: 299 ALNLIKILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
           A  L+ +LK    PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG 
Sbjct: 304 AEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGD 363

Query: 357 DILAACGQLKSLSKRIPKVPRQEMQITG 384
           DI AACGQL           ++ ++  G
Sbjct: 364 DIDAACGQLAGDVMDKTNRKQRYLKKLG 391


>gi|285018369|ref|YP_003376080.1| hypothetical protein XALc_1591 [Xanthomonas albilineans GPE PC73]
 gi|283473587|emb|CBA16090.1| conserved hypothetical protein 48 [Xanthomonas albilineans]
          Length = 401

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 164/382 (42%), Positives = 225/382 (58%), Gaps = 28/382 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +++L+ + RE LE    +        R R  Q+ KWI+ R + DF+ M+D+ + +R  L 
Sbjct: 22  RQNLLDLDREGLERFFAE---TLGEARYRAHQVMKWIHHRYVTDFEQMTDLGKALRAKLQ 78

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QH  +I P IV +K S DGT KWLL      + G   IETVYIP+K RGTLCVSSQVGC 
Sbjct: 79  QHAEVIVPNIVFDKPSADGTHKWLLAM---GVDGKNAIETVYIPDKGRGTLCVSSQVGCG 135

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC T TQ   RNL+  EI+ QV +A   LG+           +P   R+++N+VMM
Sbjct: 136 LNCSFCSTATQGFNRNLSTAEIVGQVWVAARHLGN-----------VPHQQRRLTNVVMM 184

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLHA
Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSGESDVSLAVSLHA 244

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIK 304
            ++ LR  LVP+N+KYP+  L+ AC  Y         +TFEY ++KGIND P  A  L +
Sbjct: 245 PNDTLRETLVPLNKKYPIAELMAACARYLRANKRRESVTFEYTLMKGINDQPEHARQLAR 304

Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
           +++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  RG 
Sbjct: 305 LMRQFDNAVQAANAGKVNLIPFNPFPGTRYARSGETEIRAFQKILLDAQVLTMVRRTRGD 364

Query: 357 DILAACGQLKSLSKRIPKVPRQ 378
           DI AACGQLK     + +  RQ
Sbjct: 365 DIDAACGQLKGQV--MDRTRRQ 384


>gi|291484127|dbj|BAI85202.1| hypothetical protein BSNT_02588 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 363

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 119/368 (32%), Positives = 202/368 (54%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ S+     +E+++ L   G        R +QI++W+Y + +  F+ M+++S+++R  L
Sbjct: 16  ERPSIYSFELDEIKQWLTDNG----EKPFRAAQIFEWLYEKRVSSFEEMTNLSKDLREKL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N HF +   +   ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 72  NTHFVLTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  NF+ +   L I +   GL+   R IT+STSG +P I    ++ + +  AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYEFADQQMQINFAISL 232

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PINR Y L  L++A ++Y   +   RI+FEY +  G+ND    A  L 
Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKTGR-RISFEYGLFGGVNDQVEHAEELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L+G+   +NLIP N  P  +Y+ + +  I  F + +K  G +  IR  +G DI AACG
Sbjct: 292 DLLEGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 352 QLRAKERQ 359


>gi|156502452|ref|YP_001428517.1| radical SAM enzyme, Cfr family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|205829764|sp|A7NC58|RLMN_FRATF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|156253055|gb|ABU61561.1| radical SAM enzyme, Cfr family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 370

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 157/378 (41%), Positives = 228/378 (60%), Gaps = 24/378 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G+ ++ +E+  + IG      +    Q++KWI+ +G+ DF  M+D+ + +RH L
Sbjct: 4   DKVNLLGLNQKAIEDFFISIG----KKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  P++V  K S DGT KWL+        G   +ETV+IPE+ RGTLCVSSQ+GC
Sbjct: 60  KDKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQIGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
             ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+ 
Sbjct: 224 TPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVA 283

Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +LK    PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343

Query: 363 GQLKSLSKRIPKVPRQEM 380
           GQL      + K  R+++
Sbjct: 344 GQLAGDV--MDKTNRKQI 359


>gi|78047623|ref|YP_363798.1| radical SAM superfamily protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036053|emb|CAJ23744.1| radical SAM superfamily protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 405

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 163/383 (42%), Positives = 226/383 (59%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE             R R  Q+ KWI+ R + DF  M+D+ + +R  L
Sbjct: 25  RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLCKALRAKL 81

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +QH  ++ P +V +K S DGT KWLL   A    G   IETVYIP+K RGTLCVSSQVGC
Sbjct: 82  HQHAEVLVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVGC 138

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 139 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 187

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   + +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 188 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 247

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+++C  Y         +TFEY ++KGIND P  A  L 
Sbjct: 248 AANDTLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 307

Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           ++++            K+NLIPFNP+PG  Y  S + +I  F + +  +   + +R  RG
Sbjct: 308 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 367

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 368 DDIDAACGQLKGQV--MDRTRRQ 388


>gi|308173538|ref|YP_003920243.1| Fe-S-cluster AdoMet radical enzyme [Bacillus amyloliquefaciens DSM
           7]
 gi|307606402|emb|CBI42773.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus
           amyloliquefaciens DSM 7]
          Length = 363

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 201/368 (54%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ S+     +E+++ L + G        R +QI++W+Y + +  F  M+++S+ +R  L
Sbjct: 16  EQPSIYSFELDEIKQWLTENG----EKPFRAAQIFEWLYEKRVSSFDEMTNLSKSLREKL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F +   +   ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 72  ESNFVMTTMKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  NF+ +   L I +   GL+   R IT+STSG +P I    ++ + +  AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYDFADQKMQINFAISL 232

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PIN+ Y L  L++A ++Y   +   RI+FEY +  G+ND    A  L 
Sbjct: 233 HAPNTEIRSRLMPINKAYKLPDLMEAVKYYIEKTGR-RISFEYGLFGGVNDQVEHAEELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG+   +NLIP N  P  +Y+ + +  I  F + +K  G +  IR  +G DI AACG
Sbjct: 292 ELLKGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 352 QLRAKERQ 359


>gi|28199501|ref|NP_779815.1| hypothetical protein PD1624 [Xylella fastidiosa Temecula1]
 gi|81585666|sp|Q87B36|RLMN_XYLFT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829942|sp|B2I7V5|RLMN_XYLF2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|28057616|gb|AAO29464.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|307578508|gb|ADN62477.1| hypothetical protein XFLM_02390 [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 406

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 159/383 (41%), Positives = 221/383 (57%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE     +       R R  Q+ KWI+ R + DF+ M+D+ + +R  L
Sbjct: 26  RKQNLLELDREGLERFFEDV---LGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRL 82

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                +  P +V +K S DGT KWLL            IETVYIP+K RGTLCVSSQ+GC
Sbjct: 83  QACAEVRVPRVVFDKHSADGTHKWLLAM---GTDRKNAIETVYIPDKGRGTLCVSSQIGC 139

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 140 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 188

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   S +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 189 MGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 248

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+ +C  Y  +      +TFEY ++KG+ND    A  L 
Sbjct: 249 APNDKLREQLVPLNKKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELA 308

Query: 304 KILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           K+++            K+NLIPFNP+PG  Y  S + DI  F + +  +   + +R  RG
Sbjct: 309 KLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRG 368

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 369 DDIDAACGQLKGQV--VDRTRRQ 389


>gi|59711233|ref|YP_204009.1| hypothetical protein VF_0626 [Vibrio fischeri ES114]
 gi|75354452|sp|Q5E775|RLMN_VIBF1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|59479334|gb|AAW85121.1| predicted enzyme [Vibrio fischeri ES114]
          Length = 372

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 145/381 (38%), Positives = 208/381 (54%), Gaps = 23/381 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+   R+ L     +          R  Q+ KW+Y  G  DF  M++I++++R  L 
Sbjct: 5   KINLLDFDRKGLRAFFSE---ELGEKAFRADQVMKWMYHFGCDDFDQMNNINKKLREKLK 61

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  P + + + S DGT KW ++          ++ETVYIP+  R TLCVSSQVGC+
Sbjct: 62  HKCEIRAPYVSEAQHSSDGTIKWAMKVGD------QDVETVYIPDGDRATLCVSSQVGCA 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ Q+  A   +G          +   +  R I+N+VMM
Sbjct: 116 LECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKETGRRPITNVVMM 165

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  N+  +L I  D +G + SKRR+T+STSG V  + ++  +I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLIPALEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHA 225

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303
            +++LR+ ++PIN ++ ++  + + R Y   SN    R+T EYV+L  +ND    A  L 
Sbjct: 226 PTDELRSQIMPINDRWDIDAFLASVRRYIASSNANRGRVTVEYVLLDHVNDDMDHARQLA 285

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LK  PAKINLIPFNP+PG  Y       I  F + +    Y+  IR  RG DI AACG
Sbjct: 286 ELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDYTVTIRKTRGDDIDAACG 345

Query: 364 QLKSLSKRIPKVPRQEMQITG 384
           QL      I +  R +++  G
Sbjct: 346 QLVGDV--IDRTKRTKVKQQG 364


>gi|321315341|ref|YP_004207628.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
           BSn5]
 gi|320021615|gb|ADV96601.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
           BSn5]
          Length = 363

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 119/368 (32%), Positives = 202/368 (54%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ S+     +E+++ L   G        R +QI++W+Y + +  F+ M+++S+++R  L
Sbjct: 16  ERPSIYSFELDEIKQWLTDNG----EKPFRAAQIFEWLYEKRVSSFEDMTNLSKDLREKL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N HF +   +   ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 72  NTHFVLTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  NF+ +   L I +   GL+   R IT+STSG +P I    ++ + +  AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYEFADQQMQINFAISL 232

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PINR Y L  L++A ++Y   +   RI+FEY +  G+ND    A  L 
Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKTGR-RISFEYGLFGGVNDQVEHAEELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L+G+   +NLIP N  P  +Y+ + +  I  F + +K  G +  IR  +G DI AACG
Sbjct: 292 DLLEGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 352 QLRAKERQ 359


>gi|134301956|ref|YP_001121925.1| radical SAM protein [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|205829767|sp|A4IY03|RLMN_FRATW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|134049733|gb|ABO46804.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 370

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 157/382 (41%), Positives = 228/382 (59%), Gaps = 22/382 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G+ ++ +E+  + IG      +    Q++KWI+ +G+ DF  M+D+ + +RH L
Sbjct: 4   DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  P++V  K S DGT KWL+        G   +ETV+I E+ RGTLCVSSQVGC
Sbjct: 60  KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFILEEGRGTLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+ 
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVA 283

Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +LK    PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL           ++ ++  G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365


>gi|328472598|gb|EGF43461.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           parahaemolyticus 10329]
          Length = 375

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 141/365 (38%), Positives = 204/365 (55%), Gaps = 21/365 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ + +   +          R  Q+ KWIY  G+ DF  M++I++++R 
Sbjct: 2   TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW ++          ++ETVYIPE+ R TLCVSSQV
Sbjct: 59  KLQHKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEEDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++K  P KINLIPFNP+PG  Y       I  F + + +  ++  +R  RG DI A
Sbjct: 283 ELAELMKETPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342

Query: 361 ACGQL 365
           ACGQL
Sbjct: 343 ACGQL 347


>gi|307272756|ref|ZP_07554003.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0855]
 gi|306510370|gb|EFM79393.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0855]
          Length = 357

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 217/379 (57%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    +              +  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N  R+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AA GQL+S   +  KV  Q
Sbjct: 339 AAFGQLRSKQMKKEKVKNQ 357


>gi|205373324|ref|ZP_03226128.1| YloN [Bacillus coahuilensis m4-4]
          Length = 362

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 119/368 (32%), Positives = 206/368 (55%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +  +E++  + + G        R +Q+++W+Y++ +  F+ M+++S+ +R  L
Sbjct: 15  KKPSIFSLELDEIKNWMSENG----EKPFRAAQVFEWLYIKRVTSFEDMTNLSKPLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + F +   + + ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 71  TESFEMTTLKTLIQQQSSDGTIKFLFELHD-----GYSIETVLMRHEYGNSVCVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVLKVQQALDE--------------TEERVSSVVI 171

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N++++   L   ++  GL+   R IT+STSG +P I +  +E   +  AISL
Sbjct: 172 MGIGEPFDNYESMMSFLRTINNEKGLNIGARHITVSTSGIIPKIYKFADEKTQINFAISL 231

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + +LR+ L+PINR Y L  L+DA ++Y   +   R++FEY +  G+NDS   A  L 
Sbjct: 232 HAANTELRSRLMPINRAYKLPDLMDAVKYYIDKTGR-RVSFEYGLFGGVNDSVEHAEELA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   INLIP N  P  +Y+ + ++ I  F + +K+ G +  IR  +G DI AACG
Sbjct: 291 DLVKDVKCHINLIPVNYVPERDYVRTPKEKIFEFEKALKKRGVNVTIRREQGHDIDAACG 350

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 351 QLRAKERK 358


>gi|90410870|ref|ZP_01218884.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK]
 gi|90328083|gb|EAS44394.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK]
          Length = 373

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 147/383 (38%), Positives = 209/383 (54%), Gaps = 24/383 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  + K +L+ + R+ L     +          R  QI KWIY  G  DF  M++I++++
Sbjct: 1   MTTV-KTNLLDLDRKGLRTYFAE---ELNEKAFRADQIMKWIYQFGCDDFDQMTNINKKL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  P + + + S DGT KW +R          ++ETVYIP+  R TLCVSS
Sbjct: 57  REKLKRVAEIRAPYVSEAQHSVDGTIKWAMRVGD------QDVETVYIPDGDRATLCVSS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C+FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+
Sbjct: 111 QVGCALACTFCSTAQQGFNRNLRVSEIIGQVWRAAKEIG----------IEKETGRRPIT 160

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++   I V LA
Sbjct: 161 NVVMMGMGEPLLNMKNLIPALEIMLDDIGFGLSKRRVTVSTSGVVSGLDQMTGNIDVALA 220

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRD 298
           ISLHA +++LR+ ++PIN ++ +   +++ R Y   SN    R+T EYV+L  +ND    
Sbjct: 221 ISLHAPTDELRSQIMPINDRFNIATFLESVRRYVEQSNANRGRVTVEYVLLDHVNDDMEH 280

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L  +LK  PAKINLIPFNP+PG  Y       I  F + +    ++  +R  RG DI
Sbjct: 281 ARQLAVLLKDTPAKINLIPFNPYPGSPYRKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDI 340

Query: 359 LAACGQLKSLSKRIPKVPRQEMQ 381
            AACGQL      I +  R +++
Sbjct: 341 DAACGQLVGDV--IDRTKRTQVK 361


>gi|332527850|ref|ZP_08403887.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2]
 gi|332112427|gb|EGJ12220.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2]
          Length = 372

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 148/366 (40%), Positives = 205/366 (56%), Gaps = 23/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+    E L      +G      R R  Q+++WI+ +G  DF  MSD+++ +R  L  
Sbjct: 3   VNLLDFDLEGLAAFCDSLG----EKRFRAVQLFRWIHQKGESDFDKMSDLAKSLRGKLAG 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +    ++ E +S DGT KWL       +GG   +ETVYIPE  RGTLCVSSQ GC++
Sbjct: 59  AAVVESLPVISEHVSADGTTKWLF-----DVGGGNAVETVYIPEDDRGTLCVSSQAGCAV 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q   RNL+  EI+ Q+  A               +  P   R I N+VMMG
Sbjct: 114 GCRFCSTGHQGFSRNLSTGEIIAQLRYAEH------------RLRGPDGQRVIDNVVMMG 161

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+  V  +L +  D  G   S+RR+T+STSG V  I R+ E+  V LA+SLHA 
Sbjct: 162 MGEPLQNYAAVVPALRVMLDDHGYGLSRRRVTVSTSGMVAMIDRLREDCPVALAVSLHAP 221

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            + LR++LVPINRK  +E L+DAC  Y   +    ITFEY ML G+ND+P  A  L+ ++
Sbjct: 222 DDALRDMLVPINRKDGIEALLDACLRYVEAAPRDFITFEYCMLDGVNDAPEQAQQLVHLV 281

Query: 307 KGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +    P K NLIPFNP+P      S ++ +  F++ ++ +G  + IR  RG DI AACGQ
Sbjct: 282 RRRRVPCKFNLIPFNPFPESGLKRSPRERVTAFAKVLQDAGIVTTIRKVRGDDIDAACGQ 341

Query: 365 LKSLSK 370
           L    +
Sbjct: 342 LAGEVQ 347


>gi|242373506|ref|ZP_04819080.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis M23864:W1]
 gi|242348869|gb|EES40471.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis M23864:W1]
          Length = 364

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 207/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+S+  +  +E+++ L+  G      + R  QI++W+Y + +     M+++S+++R +L
Sbjct: 17  EKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNSIDEMTNLSKDLRQVL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F++     V ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 73  KDNFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H   +++R+ L+PINR Y +E L++A ++Y   +N  R+TFEY +  G+ND    A  L 
Sbjct: 234 HGAKDEIRSRLMPINRAYNVEKLMEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   +NLIP N  P   Y+ + ++DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKDLNCHVNLIPVNHVPERNYVKTPREDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|89256367|ref|YP_513729.1| radical SAM superfamily protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314812|ref|YP_763535.1| Fe-S-cluster oxidoreductase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010712|ref|ZP_02275643.1| probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367703|ref|ZP_04983724.1| radical SAM superfamily protein; probable Fe-S-cluster
           oxidoreductase [Francisella tularensis subsp. holarctica
           257]
 gi|122325172|sp|Q0BLY6|RLMN_FRATO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|122999743|sp|Q2A3H3|RLMN_FRATH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|89144198|emb|CAJ79467.1| Radical SAM superfamily protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129711|gb|ABI82898.1| probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253514|gb|EBA52608.1| radical SAM superfamily protein; probable Fe-S-cluster
           oxidoreductase [Francisella tularensis subsp. holarctica
           257]
          Length = 370

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 156/382 (40%), Positives = 227/382 (59%), Gaps = 22/382 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G+ ++ +E+  + IG      +    Q++KWI+ +G+ DF  M+D+ + +RH L
Sbjct: 4   DKVNLLGLNQKAIEDFFISIG----KKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  P++V  K S DGT KWL+        G   +ETV+IPE+ RGTLCVSSQ+GC
Sbjct: 60  KDKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQIGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
             ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+ 
Sbjct: 224 TPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVA 283

Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +LK    PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL           ++ ++  G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365


>gi|71274608|ref|ZP_00650896.1| Conserved hypothetical protein 48 [Xylella fastidiosa Dixon]
 gi|170730870|ref|YP_001776303.1| hypothetical protein Xfasm12_1780 [Xylella fastidiosa M12]
 gi|205829927|sp|B0U494|RLMN_XYLFM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|71164340|gb|EAO14054.1| Conserved hypothetical protein 48 [Xylella fastidiosa Dixon]
 gi|167965663|gb|ACA12673.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 406

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 159/383 (41%), Positives = 220/383 (57%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE     +       R R  Q+ KWI+ R + DF+ M+D+ + +R  L
Sbjct: 26  RKQNLLELDREGLERFFEDV---LGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRL 82

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                +  P +V +K S DGT KWLL            IETVYIP+K RGTLCVSSQ+GC
Sbjct: 83  QACAEVRVPRVVFDKHSADGTHKWLLAM---GTDRKNAIETVYIPDKGRGTLCVSSQIGC 139

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC T TQ   RNLT  EI+ QV +A   LG+ P              R+++N+VM
Sbjct: 140 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVPHQR-----------RRLTNVVM 188

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   S +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 189 MGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 248

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+ +C  Y  +      +TFEY ++KG+ND    A  L 
Sbjct: 249 APNDKLREQLVPLNKKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELA 308

Query: 304 KILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           K+++            K+NLIPFNP+PG  Y  S + DI  F + +  +   + +R  RG
Sbjct: 309 KLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRG 368

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 369 DDIDAACGQLKGQV--VDRTRRQ 389


>gi|71898147|ref|ZP_00680333.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1]
 gi|71732121|gb|EAO34177.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1]
          Length = 401

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/383 (42%), Positives = 224/383 (58%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE     +       R R  Q+ KWI+ R + DF+ M+D+ + +R  L
Sbjct: 21  RKQNLLELDREGLERFFEDV---LGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRL 77

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                +  P +V +K S DGT KWLL   A        IETVYIP+K RGTLCVSSQ+GC
Sbjct: 78  QACAEVRVPRVVFDKHSVDGTHKWLLAMGA---DRKNAIETVYIPDKGRGTLCVSSQIGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 135 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   S +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+ +C  Y  ++  R  +TFEY ++KG+ND    A  L 
Sbjct: 244 APNDKLREQLVPLNKKYPIVELMASCERYLSVNPKRDSVTFEYTLMKGVNDKQEHAHELA 303

Query: 304 KILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           K+++            K+NLIPFNP+PG  Y  S + DI  F + +  +   + +R  RG
Sbjct: 304 KLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRG 363

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 364 DDIDAACGQLKGQV--VDRTRRQ 384


>gi|182682234|ref|YP_001830394.1| radical SAM protein [Xylella fastidiosa M23]
 gi|182632344|gb|ACB93120.1| radical SAM enzyme, Cfr family [Xylella fastidiosa M23]
          Length = 401

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 159/383 (41%), Positives = 221/383 (57%), Gaps = 28/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K++L+ + RE LE     +       R R  Q+ KWI+ R + DF+ M+D+ + +R  L
Sbjct: 21  RKQNLLELDREGLERFFEDV---LGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRL 77

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                +  P +V +K S DGT KWLL            IETVYIP+K RGTLCVSSQ+GC
Sbjct: 78  QACAEVRVPRVVFDKHSADGTHKWLLAM---GTDRKNAIETVYIPDKGRGTLCVSSQIGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC T TQ   RNLT  EI+ QV +A   LG+           +P   R+++N+VM
Sbjct: 135 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NFDNV +++S+  D +G   S +R+TLSTSG VP I R+  E  V LA+SLH
Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR  LVP+N+KYP+  L+ +C  Y  +      +TFEY ++KG+ND    A  L 
Sbjct: 244 APNDKLREQLVPLNKKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELA 303

Query: 304 KILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           K+++            K+NLIPFNP+PG  Y  S + DI  F + +  +   + +R  RG
Sbjct: 304 KLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRG 363

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACGQLK     + +  RQ
Sbjct: 364 DDIDAACGQLKGQV--VDRTRRQ 384


>gi|56708143|ref|YP_170039.1| radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670614|ref|YP_667171.1| radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457239|ref|ZP_03665712.1| radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370628|ref|ZP_04986633.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874946|ref|ZP_05247656.1| radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|81597446|sp|Q5NG03|RLMN_FRATT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123063459|sp|Q14HF5|RLMN_FRAT1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|54112615|gb|AAV28941.1| NT02FT0031 [synthetic construct]
 gi|56604635|emb|CAG45691.1| Radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320947|emb|CAL09074.1| Radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568871|gb|EDN34525.1| hypothetical protein FTBG_00416 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840945|gb|EET19381.1| radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159349|gb|ADA78740.1| Radical SAM superfamily protein [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 370

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 156/382 (40%), Positives = 227/382 (59%), Gaps = 22/382 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G+ ++ +E+  + IG      +    Q++KWI+ +G+ DF  M+D+ + +RH L
Sbjct: 4   DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +   I  P++V  K S DGT KWL+        G   +ETV+I  + RGTLCVSSQVGC
Sbjct: 60  KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFILAEGRGTLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L CSFC TG Q   RNL+A E++ Q+ +A   L    G  D            ++NIVM
Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL NF+NV  ++ I  D +    S+R++TLSTSG VP I  + E+ GV LA+SLH
Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LRN +VPIN+KY ++ L++AC+ Y      + ITFEY +++ +ND+  DA  L+ 
Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSDAEELVA 283

Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +LK    PAKINLIPFNP+PG  Y       I  F E ++ +G+ + +R  RG DI AAC
Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL           ++ ++  G
Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365


>gi|293557268|ref|ZP_06675815.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039]
 gi|291600555|gb|EFF30860.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039]
          Length = 355

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 132/376 (35%), Positives = 221/376 (58%), Gaps = 28/376 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+S+ G+  EEL    ++ G      + R +Q+W+W+Y + + +F  M+++S+++   
Sbjct: 1   MEKQSIYGLTNEELINWFIENG----EKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEK 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L++HF I   + +  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LSEHFIINPLKQMVVQEASDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q+++ +    +             ++G ++S++V
Sbjct: 112 CNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDE------------RNLGERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DNV   L I +D+ GL+   R IT+STSG    I       + V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L++A   Y   +N  RITFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNR-RITFEYIMLNQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +LK     A +NLIP+NP    + Y    + D++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLKDKKKLAYVNLIPYNPVSEHDQYSRCPKADVLRFYDVLKKNGVNCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKV 375
           AACGQL+  SK++ K 
Sbjct: 339 AACGQLR--SKQMKKT 352


>gi|54307955|ref|YP_128975.1| hypothetical protein PBPRA0760 [Photobacterium profundum SS9]
 gi|81615490|sp|Q6LU52|RLMN_PHOPR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|46912381|emb|CAG19173.1| Conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 373

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 145/383 (37%), Positives = 207/383 (54%), Gaps = 24/383 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  + K +L+ + R+ L     +          R  QI KWIY  G  DF  M++I++++
Sbjct: 1   MTTV-KTNLLDLDRKGLRTYFAE---ELNEKAFRADQIMKWIYQFGCDDFDQMTNINKKL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  P +   + S DGT KW +R          ++ETVYIP+  R TLCVSS
Sbjct: 57  REKLKRVAEIRAPYVSQAQHSVDGTIKWAMRVGD------QDVETVYIPDGDRATLCVSS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C+FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+
Sbjct: 111 QVGCALACTFCSTAQQGFNRNLRVSEIIGQVWRAAKEIG----------IEKDTGRRPIT 160

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++   I V LA
Sbjct: 161 NVVMMGMGEPLLNMKNLIPALEIMLDDIGFGLSKRRVTVSTSGVVSGLDQMTGNIDVALA 220

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRD 298
           ISLHA +++LR+ ++PIN ++ +   +++   Y   SN    R+T EY++L  +ND    
Sbjct: 221 ISLHAPTDELRSQIMPINDRFNIATFLESVSRYIEQSNANRGRVTVEYILLDHVNDDMEH 280

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L  +LK  PAKINLIPFNP+PG  Y       I  F + +    ++  +R  RG DI
Sbjct: 281 ARQLAVLLKDTPAKINLIPFNPYPGSPYRKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDI 340

Query: 359 LAACGQLKSLSKRIPKVPRQEMQ 381
            AACGQL      I +  R +++
Sbjct: 341 DAACGQLVGDV--IDRTKRTQVK 361


>gi|332534669|ref|ZP_08410500.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035881|gb|EGI72363.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 376

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 162/383 (42%), Positives = 226/383 (59%), Gaps = 21/383 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   KK +L+ + R+ + E     G        R+ Q+ KWIY  G+ +F  M+++++++
Sbjct: 1   MTEQKKINLLDLNRDAMRELFASFG----EKPFRSDQVMKWIYHFGVDNFDEMTNVNKKL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           +  L     I+ PEI   + + DGT K+ L        G  E+E V+IPEK R TLCVSS
Sbjct: 57  KEKLKAECEIVAPEITVRQQASDGTIKYALILE-----GGQEVEAVWIPEKERATLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C+FC T  Q   RNL   EI+ QV      +G          +   S  R ++
Sbjct: 112 QVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG----------LDGHSEKRPVT 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  NV  ++ +  D  G   SKRR+TLSTSG VP +  + E+I V LA
Sbjct: 162 NVVMMGMGEPLLNLKNVVPAMELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299
           ISLHA  N LR+ILVP+N+KYP+E  + ACR Y   S A + +T EYVML GINDS   A
Sbjct: 222 ISLHAPDNALRDILVPVNKKYPIEEFLAACRRYIDGSKANKDVTVEYVMLNGINDSTDQA 281

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L++ LKG P+K+NLIPFNP+PG EY  S    I  FS+ ++ +G +  +R  RG DI 
Sbjct: 282 HALVQTLKGTPSKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGVTCIVRRTRGDDID 341

Query: 360 AACGQL-KSLSKRIPKVPRQEMQ 381
           AACGQL   +  R  ++ +++++
Sbjct: 342 AACGQLVGDVVDRTKRLAKKKIR 364


>gi|209694315|ref|YP_002262243.1| hypothetical protein VSAL_I0726 [Aliivibrio salmonicida LFI1238]
 gi|254807148|sp|B6EGY4|RLMN_ALISL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|208008266|emb|CAQ78411.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 383

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 147/384 (38%), Positives = 207/384 (53%), Gaps = 23/384 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
              K +L+   R+ L     +          R  QI KW+Y  G  DF  M++I++++R 
Sbjct: 2   TTTKTNLLDFDRKGLRAFFSE---ELGEKAFRADQIMKWMYHFGCDDFDQMNNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L Q   I  P + + + S DGT KW ++          ++ETVYIP+  R TLCVSSQV
Sbjct: 59  KLKQKCEIRAPYVSEAQHSVDGTIKWAMKVGD------QDVETVYIPDGDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C+FC T  Q   RNL   EI+ Q+  A   +G          +   +  R I+N+
Sbjct: 113 GCALACTFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  SL I  D +G   SKRR+T+STSG V  + ++  ++ V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLMPSLDIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGKVDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ +E  +   R Y   SN    R+T EYV+L  IND    A 
Sbjct: 223 LHAPTDKLRSEIMPINDRWNIEAFLACVREYIASSNANRGRVTVEYVLLDHINDDMDHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L ++LK  PAKINLIPFNP+PG  Y       I  F + +    ++  +R  RG DI A
Sbjct: 283 QLAELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRRTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
           ACGQL      I +  R +++  G
Sbjct: 343 ACGQLVGDV--IDRTKRTQVKQQG 364


>gi|310642737|ref|YP_003947495.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus
           polymyxa SC2]
 gi|309247687|gb|ADO57254.1| Ribosomal RNA large subunit methyltransferase N [Paenibacillus
           polymyxa SC2]
          Length = 355

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 196/365 (53%), Gaps = 25/365 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +  +  EEL++     G P      R  QI+ W+YV+ I +F  M+++S+ +R  L 
Sbjct: 11  KPFIYDLTLEELQDWAKNNGEPA----FRGGQIFDWLYVKRINNFSEMTNLSKALREKLE 66

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + FS +    + +  S DGT K+L             IETV +      ++CV++QVGC 
Sbjct: 67  EQFSFVTLHEITKLESKDGTVKFLFGLHDD-----HAIETVIMRHNYGNSICVTTQVGCR 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L RNLTA EI  QV+ A+ +              +     ++S+IV+M
Sbjct: 122 IGCTFCASTLGGLKRNLTAGEITAQVVQAQKI--------------LDKTNERVSSIVIM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEP  N++     L       GL+  +R IT+STSG VPNI +  +E   + LAIS+H
Sbjct: 168 GSGEPFENYEATMTFLRTMIHEKGLNIGQRHITVSTSGIVPNIYKFADEDTQINLAISIH 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR+ L+P+NR+YP + ++D+ R+Y   +   RI+FEY ++ G+ND    A  L  
Sbjct: 228 APNDALRSKLMPVNRRYPFKDVMDSLRYYLAKTGR-RISFEYALIGGVNDQAEHAEELAD 286

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK +   +NLIP N  P  +Y+ + + DI  F   +   G +  IR  +G DI AACGQ
Sbjct: 287 VLKDMLCHVNLIPVNHVPERKYVRTSRSDIFNFQRILAEKGVNVTIRREQGHDIAAACGQ 346

Query: 365 LKSLS 369
           L++  
Sbjct: 347 LRAKH 351


>gi|317129257|ref|YP_004095539.1| radical SAM enzyme, Cfr family [Bacillus cellulosilyticus DSM 2522]
 gi|315474205|gb|ADU30808.1| radical SAM enzyme, Cfr family [Bacillus cellulosilyticus DSM 2522]
          Length = 362

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 131/367 (35%), Positives = 200/367 (54%), Gaps = 25/367 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K S+  +  EEL + +  IG      + R  QI+ W+YV+ +  F+ M+++S+++RH L
Sbjct: 14  EKPSIYSLTYEELIQWIEGIG----ESKFRAKQIFDWLYVKRVTSFEEMTNLSKDLRHNL 69

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              +SI     +  + S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 70  ANEYSITTLSTITNQTSKDGTIKFLFELQD-----GYSIETVVMRHEYGNSVCVTTQVGC 124

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC +    L RNL A EI+ QVL A+  L D                 ++ ++V+
Sbjct: 125 RLGCTFCASTLGGLKRNLEAGEIVAQVLKAQQFLDD--------------TDERVDSVVV 170

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D + + L   +   GL+   R IT+STSG VP I +  +E + +  AISL
Sbjct: 171 MGIGEPFDNYDELIRFLKTINHDNGLNIGARHITVSTSGVVPKIYQFADENMQINFAISL 230

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA   + R  L+PINR YP++ L+DA R+Y   +N  RITFEY +  G+NDS  DA  L 
Sbjct: 231 HAAKTETRTRLMPINRAYPIDKLMDAIRYYIKKTNR-RITFEYGLFGGVNDSIEDAELLA 289

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K I   +NLIP N      Y+ + ++ I  F   +K    +  IR  +G DI AACG
Sbjct: 290 DLIKDIKCHVNLIPVNDVLERNYVRTPKEQIFAFERALKNRDINVTIRREQGHDIDAACG 349

Query: 364 QLKSLSK 370
           QL++  +
Sbjct: 350 QLRAKER 356


>gi|91225141|ref|ZP_01260363.1| hypothetical protein V12G01_12975 [Vibrio alginolyticus 12G01]
 gi|91190084|gb|EAS76355.1| hypothetical protein V12G01_12975 [Vibrio alginolyticus 12G01]
          Length = 375

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 143/380 (37%), Positives = 208/380 (54%), Gaps = 23/380 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ + +   +          R  Q+ KWIY  G+ DF+ M++I++++R 
Sbjct: 2   TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFEKMTNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW ++          ++ETVYIPE  R TLCVSSQV
Sbjct: 59  KLLHKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L +  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDEMDHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++K  P KINLIPFNP+PG  Y       I  F + + +  ++  +R  RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQEM 380
           ACGQL      I +  R  M
Sbjct: 343 ACGQLVGDV--IDRTKRTAM 360


>gi|256853566|ref|ZP_05558931.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecalis T8]
 gi|256710509|gb|EEU25552.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           faecalis T8]
          Length = 357

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 219/379 (57%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ +++  +    +              +  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAKIMWVQHYFDE------------RGLDERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYVNVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R +++ INR +P+E L+ A   Y   +N  R+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTLIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  KV  Q
Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357


>gi|251797737|ref|YP_003012468.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp.
           JDR-2]
 gi|247545363|gb|ACT02382.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
          Length = 348

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 203/365 (55%), Gaps = 25/365 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +     ++L++ + + G P      R  Q++ W+YV+ ++ F+ MS++ + +R  L 
Sbjct: 2   KPIIYDYNLDQLQDWMKENGEPA----FRGGQLFDWLYVKRVKSFEEMSNLPKPLREKLE 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F  +    + +  S DGT K+L             IETV +  +   ++CV++QVGC 
Sbjct: 58  ESFQFVTLSEITKFESKDGTVKFLFGLHDN-----HAIETVIMRHEYGNSICVTTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L RNLTA EI+ QV+ A+ +              + + G ++S+IV+M
Sbjct: 113 IGCTFCASTLGGLKRNLTAGEIVAQVVTAQQM--------------LDATGERVSSIVIM 158

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEP  N+D     L I     GL+  +R IT+STSG VP++ +  EE   + LAIS+H
Sbjct: 159 GSGEPFENYDATMTFLRIMIHEKGLNIGQRHITVSTSGIVPSMYKFTEENTQINLAISIH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR+ L+P+NR++P E ++ ACR++   +   RITFEY ++ G+ND    A  L  
Sbjct: 219 APNDKLRSKLMPVNRRFPFEDVMAACRNHIAKTGR-RITFEYALIGGVNDQAEHAQELAD 277

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+G+   +NLIP N  P   Y+ + + DI  F   ++++  +  IR  +G DI AACGQ
Sbjct: 278 VLQGMLCHVNLIPVNHVPERNYVRTPRNDIFEFQRILEKNKINCTIRREQGHDIAAACGQ 337

Query: 365 LKSLS 369
           L++  
Sbjct: 338 LRAKH 342


>gi|319401489|gb|EFV89699.1| radical SAM superfamily protein [Staphylococcus epidermidis FRI909]
          Length = 364

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+S+  +  +E+++ L+  G      + R  QI++W+Y + +     M+++S+E+R  L
Sbjct: 17  EKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQTL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             HF++     V ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 73  KDHFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H   +++R+ L+PINR Y ++ L++A R+Y   +N  R+TFEY +  G+ND    A +L 
Sbjct: 234 HGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNR-RVTFEYGLFGGVNDQLEHARDLA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|16078638|ref|NP_389457.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309450|ref|ZP_03591297.1| hypothetical protein Bsubs1_08696 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313775|ref|ZP_03595580.1| hypothetical protein BsubsN3_08632 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318699|ref|ZP_03599993.1| hypothetical protein BsubsJ_08566 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322970|ref|ZP_03604264.1| hypothetical protein BsubsS_08672 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3287951|sp|O34617|RLMN_BACSU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|2337804|emb|CAA74265.1| YloN protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633947|emb|CAB13448.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 363

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 118/368 (32%), Positives = 201/368 (54%), Gaps = 25/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ S+     +E+++ L   G        R +QI++W+Y + +  F+ M+++S+++R  L
Sbjct: 16  ERPSIYSFELDEIKQWLTDNG----EKPFRAAQIFEWLYEKRVSSFEDMTNLSKDLREKL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N  F +   +   ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 72  NTRFVLTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  NF+ +   L I +   GL+   R IT+STSG +P I    ++ + +  AISL
Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYEFADQQMQINFAISL 232

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + ++R+ L+PINR Y L  L++A ++Y   +   RI+FEY +  G+ND    A  L 
Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKTGR-RISFEYGLFGGVNDQVEHAEELA 291

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L+G+   +NLIP N  P  +Y+ + +  I  F + +K  G +  IR  +G DI AACG
Sbjct: 292 DLLEGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351

Query: 364 QLKSLSKR 371
           QL++  ++
Sbjct: 352 QLRAKERQ 359


>gi|269965168|ref|ZP_06179302.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269830154|gb|EEZ84381.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 375

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 143/380 (37%), Positives = 208/380 (54%), Gaps = 23/380 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ + +   +          R  Q+ KWIY  G+ DF+ M++I++++R 
Sbjct: 2   TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFEKMTNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW ++          ++ETVYIPE  R TLCVSSQV
Sbjct: 59  KLLYKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L +  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++K  P KINLIPFNP+PG  Y       I  F + + +  ++  +R  RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQEM 380
           ACGQL      I +  R  M
Sbjct: 343 ACGQLVGDV--IDRTKRTAM 360


>gi|312973242|ref|ZP_07787414.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
 gi|310331837|gb|EFP99072.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
          Length = 339

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 152/349 (43%), Positives = 202/349 (57%), Gaps = 19/349 (5%)

Query: 39  WKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG 98
            KW+Y     +F  M+DI++ +R  L +   I  PE+V+E+ S DGT KW +        
Sbjct: 1   MKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD---- 56

Query: 99  GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
               +ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV  A  ++
Sbjct: 57  --QRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIV 114

Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
           G              +  R I+N+VMMGMGEPL N +NV  ++ I  D  G   SKRR+T
Sbjct: 115 G----------AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVT 164

Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           LSTSG VP + ++G+ I V LAISLHA ++++R+ +VPIN+KY +E  + A R Y   SN
Sbjct: 165 LSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSN 224

Query: 279 AR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
           A   R+T EYVML  +ND    A  L ++LK  P KINLIP+NP+PG  Y  S    I  
Sbjct: 225 ANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDR 284

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
           FS+ +   G+++ +R  RG DI AACGQL      R  +  R+ MQ   
Sbjct: 285 FSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEA 333


>gi|241890016|ref|ZP_04777314.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379]
 gi|241863638|gb|EER68022.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379]
          Length = 377

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 124/372 (33%), Positives = 205/372 (55%), Gaps = 25/372 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +    K S+  +  ++LEE ++ IG      + R  QI+ W+Y + I DF  M ++ + +
Sbjct: 15  LKDFDKMSIYSIRLDQLEEYIVSIG----EKKFRAKQIFDWLYKKRITDFSEMKNVPKSL 70

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           +  L + F I   + + ++ S DGT K+L     +       IE+V +  K   +LCV++
Sbjct: 71  QEKLAEEFEITTLKTIIKQESADGTMKFLFELQDKYT-----IESVLMKNKYGNSLCVTT 125

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C+FC +    L RNL A EI+ QVL  +                +   G +IS
Sbjct: 126 QVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQE--------------LDKKGERIS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           +IV+MG+GEP  N+D +   + I +     +   R IT+STSG VP I     E++ +  
Sbjct: 172 SIVIMGIGEPFENYDEMMDFIRIVNSDESFNIGARHITVSTSGIVPKIYDFANEKVQINF 231

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +N+LR+ ++P+NR Y ++ L++A ++Y   +N  RITFEY ++  +ND    A
Sbjct: 232 AVSLHAPTNELRSKIMPVNRAYNIDKLMEALKYYQETTNR-RITFEYGLMGKVNDQKEHA 290

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L +I+KG+   +NLIP N  P   Y+ + + DI  F + +K++  +  IR  +G DI 
Sbjct: 291 EKLSEIIKGLNCHVNLIPINYVPERNYVRTSKSDIFAFEKVLKKNKVNVTIRRTQGDDID 350

Query: 360 AACGQLKSLSKR 371
           AACGQL++  ++
Sbjct: 351 AACGQLRAKERK 362


>gi|312884301|ref|ZP_07744010.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309368074|gb|EFP95617.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 375

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 139/365 (38%), Positives = 202/365 (55%), Gaps = 21/365 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ L +              R  Q+ KWIY  G+ +F  M++I++++R 
Sbjct: 2   TTEKVNLLDFDRQGLRKFFAD---ELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L Q  ++  P + + + S DGT KW ++          ++ETVYIPE  R TLC+SSQV
Sbjct: 59  KLQQRCTVTAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCISSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ Q+  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQLWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L +  D +    SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLAFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDALRSEIMPINDRWNIDDFLASVRRYIQSSNANRGKVTIEYVLLDHVNDDMDHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L   LK  P KINLIPFNP+PG  Y       I  F + + + G++  +R  RG DI A
Sbjct: 283 ELSHTLKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQLGHTVTVRKTRGDDIDA 342

Query: 361 ACGQL 365
           ACGQL
Sbjct: 343 ACGQL 347


>gi|261252176|ref|ZP_05944749.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis
           CIP 102891]
 gi|260935567|gb|EEX91556.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis
           CIP 102891]
          Length = 374

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 140/365 (38%), Positives = 203/365 (55%), Gaps = 21/365 (5%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ + +   +          R  Q+ KWIY  G+ +F  M++I++++R 
Sbjct: 2   TTEKINLLDFDRQGMRKFFAE---ELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW ++          ++ETVYIPE  R TLCVSSQV
Sbjct: 59  KLLHRCEIKAPVVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L I  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA +++LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L  ++K  P KINLIPFNP+PG  Y       I  F + + +  ++  +R  RG DI A
Sbjct: 283 ELAVLMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342

Query: 361 ACGQL 365
           ACGQL
Sbjct: 343 ACGQL 347


>gi|229542943|ref|ZP_04432003.1| radical SAM enzyme, Cfr family [Bacillus coagulans 36D1]
 gi|229327363|gb|EEN93038.1| radical SAM enzyme, Cfr family [Bacillus coagulans 36D1]
          Length = 355

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 137/377 (36%), Positives = 223/377 (59%), Gaps = 27/377 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+S+ G+  ++L   +L+ G      + R  Q+W+W+Y + ++ F  M++++++   L
Sbjct: 1   MEKKSIFGLTIDQLTGWMLEHG----QKKFRAQQVWEWLYQKRVKSFAEMTNVNKDCLAL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +HF I   + V ++ S DGT K+L +     +     IETV + +    ++CV++QVG
Sbjct: 57  LEEHFHIHTLKQVVKQESKDGTVKFLFQLKDGNL-----IETVLMRQHYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  +  R+L + EI+ Q++  +    +               G ++S++V
Sbjct: 112 CNIGCSFCASGLLRKNRDLESGEIVEQIMYVQKHFDE------------AGKGERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  NF+NV   L I +   GL+   R IT+STSG  P I    + ++ V LAIS
Sbjct: 160 VMGIGEPFDNFENVVNFLKIINAPKGLAIGARHITVSTSGLAPKIYAFADLDLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ INR YPLE L+ A  +Y   +N  RITFEY++LK +ND   +AL L
Sbjct: 220 LHAPNNELRSRIMKINRAYPLEKLMPAIDYYLEKTNR-RITFEYILLKDVNDHKEEALQL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            K+L  K   A +NLIP+NP     Y  S+++ I+TF + +K++G +  +R   G DI A
Sbjct: 279 AKLLQDKRHLAYVNLIPYNPVNEHGYQRSEKESIMTFYDTLKKNGINCVVRQEHGTDIDA 338

Query: 361 ACGQLKSLSKRIPKVPR 377
           ACGQL+  SK+I K  R
Sbjct: 339 ACGQLR--SKQIKKANR 353


>gi|261405801|ref|YP_003242042.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp.
           Y412MC10]
 gi|329926635|ref|ZP_08281048.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
 gi|261282264|gb|ACX64235.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
 gi|328939176|gb|EGG35539.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
          Length = 346

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 128/369 (34%), Positives = 201/369 (54%), Gaps = 25/369 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +     EEL+    + G P      R +QI+ W+YV+ + DF  M+++S+E+R  L 
Sbjct: 2   KPFIYDYSLEELQAWAQENGEPA----FRGTQIYDWLYVKRVNDFAEMTNLSKELRAKLE 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q FS +    + +  S DGT K+L             IETV +      ++CV++QVGC 
Sbjct: 58  QEFSFVTLTEITKLESKDGTVKFLFGLHDD-----HAIETVIMRHNYGNSICVTTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L RNLT+ EI+ QV+ A+ +              +   G ++S+IV+M
Sbjct: 113 IGCTFCASTLGGLKRNLTSGEIVAQVVQAQKI--------------LDKTGERVSSIVIM 158

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEP  N++   K L       GL+  +R IT+STSG VPNI +  EE   + LAIS+H
Sbjct: 159 GSGEPFENYEATMKFLRTMIHEKGLNIGQRHITVSTSGIVPNIYKFTEEDTQINLAISIH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR+ L+P+NR++P + +I++ R+Y   +   RITFEY ++ G+ND    A  L  
Sbjct: 219 APNDKLRSKLMPVNRRFPFDDVIESLRYYQAKTGR-RITFEYALIGGVNDQVEHAEELAD 277

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++K +   +NLIP N  P  +Y+ + + DI  F   +   G +  IR  +G DI AACGQ
Sbjct: 278 VIKDMNCFVNLIPVNHVPERKYVRTSRNDIFKFQRALADKGVNVTIRREQGHDIAAACGQ 337

Query: 365 LKSLSKRIP 373
           L++    + 
Sbjct: 338 LRAKHMELR 346


>gi|57866756|ref|YP_188367.1| radical SAM protein [Staphylococcus epidermidis RP62A]
 gi|242242500|ref|ZP_04796945.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis W23144]
 gi|81674923|sp|Q5HPX3|RLMN_STAEQ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|57637414|gb|AAW54202.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis RP62A]
 gi|242234074|gb|EES36386.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis W23144]
          Length = 364

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 207/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+S+  +  +E+++ L+  G      + R  QI++W+Y + +     M+++S+E+R +L
Sbjct: 17  EKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQIL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             HF++     V ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 73  KDHFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H   +++R+ L+PINR Y ++ L++A R+Y   +N  R+TFEY +  G+ND    A +L 
Sbjct: 234 HGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNR-RVTFEYGLFGGVNDQLEHARDLA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|20807945|ref|NP_623116.1| Fe-S-cluster redox protein [Thermoanaerobacter tengcongensis MB4]
 gi|81590646|sp|Q8R9T4|RLMN_THETN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|20516515|gb|AAM24720.1| predicted Fe-S-cluster redox enzyme [Thermoanaerobacter
           tengcongensis MB4]
          Length = 342

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 143/366 (39%), Positives = 205/366 (56%), Gaps = 30/366 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  M  EE+EE  + +G      + R  Q++KWIY + + DF  M+DIS+ +R  L + 
Sbjct: 3   NLKDMTLEEMEEFFVNLG----ESKFRAKQLYKWIYDKRVTDFDLMTDISKNLRAKLKEI 58

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   +I++ ++S  D T K+L     + I     IE V I  K   T CVS+QVGC++
Sbjct: 59  AYISELKIIERRVSQIDDTVKYLFLLEDKNI-----IEGVAIKYKFGNTACVSTQVGCNM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +     VR+L A E++ QV+   S  G                  KISNIV+MG
Sbjct: 114 KCKFCASAIGGKVRDLKASEMVDQVMAIDSDYG------------------KISNIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
            GEP  N+D V K + I ++  GL   KR IT+ST G VP I +   EE+ V L+ISLHA
Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+LRN L+PINR YPLE L+ ACR+Y   +N  RITFEY ++ G+ND    A  L+ +
Sbjct: 216 PNNELRNELMPINRAYPLEELMKACRYYIEKTNR-RITFEYALIDGVNDKKEHAYQLVDL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N      +  S+ + ++ F + I+ +G +  +R   G DI AACGQL
Sbjct: 275 LKGMLCHVNLIPINYVKEIGFRKSNNEKVMMFKKIIENAGITCTVRRELGSDIEAACGQL 334

Query: 366 KSLSKR 371
           +    +
Sbjct: 335 RRKYLK 340


>gi|329770490|ref|ZP_08261868.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis
           M325]
 gi|328836239|gb|EGF85908.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis
           M325]
          Length = 377

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 127/372 (34%), Positives = 203/372 (54%), Gaps = 25/372 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +   +K S+  +  ++LEE ++ IG      + R  QI+ W+Y + + DF  M +I + +
Sbjct: 15  LKDFEKMSIYSIRLDQLEEYMISIG----EKKFRAKQIYDWLYKKRVTDFSEMKNIPKSL 70

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           +  L   F I     + ++ S DGT K+L     +       IE+V +  K   +LCV++
Sbjct: 71  QEKLKDEFEITTLNTIIKQESADGTMKFLFELQDKFT-----IESVLMRNKYGNSLCVTT 125

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C+FC +    L RNL A EI+ QVL  +                +   G +IS
Sbjct: 126 QVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQE--------------LDKKGERIS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           +IV+MG+GEP  N+D +   + I +     +   R IT+STSG VP I     E I +  
Sbjct: 172 SIVIMGIGEPFENYDEMMDFIKIVNSDESFNIGARHITVSTSGIVPRIYDFANENIQINF 231

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +N+LR+ ++P+NR Y ++ L++A R+Y   +N  RITFEY ++  +ND    A
Sbjct: 232 AVSLHAPTNELRSKIMPVNRAYNIDKLMEALRYYQKTTNR-RITFEYGLMGKVNDQKEHA 290

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L +I+KGI   +NLIP N  P   Y+ + + DI  F + +K++  +  IR  +G DI 
Sbjct: 291 EKLSEIIKGINCHVNLIPINYVPERNYVRTSKNDIFAFEKILKKNKVNVTIRRTQGDDID 350

Query: 360 AACGQLKSLSKR 371
           AACGQL++  ++
Sbjct: 351 AACGQLRAKERK 362


>gi|228474965|ref|ZP_04059693.1| radical SAM enzyme, Cfr family [Staphylococcus hominis SK119]
 gi|314936620|ref|ZP_07843967.1| radical SAM enzyme, Cfr family [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270950|gb|EEK12338.1| radical SAM enzyme, Cfr family [Staphylococcus hominis SK119]
 gi|313655239|gb|EFS18984.1| radical SAM enzyme, Cfr family [Staphylococcus hominis subsp.
           hominis C80]
          Length = 364

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 205/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R LL
Sbjct: 17  EKQSIYSLRYDEMQNWLVEHG----QQKFRAKQIFEWLYQKRVDTIDEMTNLSKDLRQLL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F +     V ++ S DGT K+L             IETV +      ++CV++QVGC
Sbjct: 73  KDNFVMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +                + +   ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATNERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    +E I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLKIVNDDNSLNIGARHITVSTSGIIPRIYDFADEQIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  +++R+ L+PINR Y +  L++A ++Y   +N  RITFEY +  G+ND    A +L 
Sbjct: 234 HAAKDEIRSKLMPINRAYNVGKLMEAIKYYQEKTNR-RITFEYGLFGGVNDQLEHARDLA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|86145592|ref|ZP_01063922.1| hypothetical protein MED222_01522 [Vibrio sp. MED222]
 gi|218708638|ref|YP_002416259.1| hypothetical protein VS_0616 [Vibrio splendidus LGP32]
 gi|254807223|sp|B7VJT5|RLMN_VIBSL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|85836563|gb|EAQ54689.1| hypothetical protein MED222_01522 [Vibrio sp. MED222]
 gi|218321657|emb|CAV17609.1| Predicted Fe-S-cluster redox enzyme [Vibrio splendidus LGP32]
          Length = 380

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 145/387 (37%), Positives = 211/387 (54%), Gaps = 27/387 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+   R+ L +   +          R  Q+ KWIY  G+ DF+ M++I++++R  L 
Sbjct: 5   KVNLLDFDRKGLRKFFTE---ELNEKAFRAEQVMKWIYHFGVDDFEQMNNINKKLREKLL 61

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I+ P + + + S DGT KW +           ++ETVYIP+  R TLCVSSQVGC+
Sbjct: 62  HRCEIVAPIVSEAQHSADGTIKWAMSVGD------QDVETVYIPDGDRATLCVSSQVGCA 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ Q+  A   +G          +   +  R I+N+VMM
Sbjct: 116 LECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKETGRRPITNVVMM 165

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  N+  SL +  D +G S SKRR+T+STSG V  + ++ + I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLIPSLELMLDDLGFSLSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHA 225

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303
            ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A  L 
Sbjct: 226 PNDALRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++K  P KINLIPFNP+PG  Y       I  F + +    Y+  +R  RG DI AACG
Sbjct: 286 ELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMEYNYTVTVRKTRGDDIDAACG 345

Query: 364 QL------KSLSKRIPKVPRQEMQITG 384
           QL      ++   ++ K   +   I G
Sbjct: 346 QLVGDVIDRTKRTKMLKAASEANLIAG 372


>gi|254228668|ref|ZP_04922092.1| radical SAM enzyme, Cfr family [Vibrio sp. Ex25]
 gi|262395120|ref|YP_003286974.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. Ex25]
 gi|151938847|gb|EDN57681.1| radical SAM enzyme, Cfr family [Vibrio sp. Ex25]
 gi|262338714|gb|ACY52509.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. Ex25]
          Length = 375

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 143/380 (37%), Positives = 207/380 (54%), Gaps = 23/380 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ + +   +          R  Q+ KWIY  G+ DF+ M++I++++R 
Sbjct: 2   TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFEKMTNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW +           ++ETVYIPE  R TLCVSSQV
Sbjct: 59  KLLHKCEIKAPTVAEAQHSSDGTIKWAMNVGD------QDVETVYIPEDDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L +  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++K  P KINLIPFNP+PG  Y       I  F + + +  ++  +R  RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQEM 380
           ACGQL      I +  R  M
Sbjct: 343 ACGQLVGDV--IDRTKRTAM 360


>gi|329729989|gb|EGG66380.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
           VCU144]
          Length = 364

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 207/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+S+  +  +E+++ L+  G      + R  QI++W+Y + +     M+++S+E+R +L
Sbjct: 17  EKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQIL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             HF++     V ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 73  KDHFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H   +++R+ L+PINR Y ++ L++A R+Y   +N  R+TFEY +  G+ND    A +L 
Sbjct: 234 HGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNR-RVTFEYGLFGGVNDQLEHARDLA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|29654554|ref|NP_820246.1| radical SAM protein [Coxiella burnetii RSA 493]
 gi|154706747|ref|YP_001424689.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111]
 gi|161830060|ref|YP_001597102.1| radical SAM protein [Coxiella burnetii RSA 331]
 gi|81628860|sp|Q83C77|RLMN_COXBU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829741|sp|A9KFV0|RLMN_COXBN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829742|sp|A9NDW2|RLMN_COXBR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|29541821|gb|AAO90760.1| radical SAM family enzyme [Coxiella burnetii RSA 493]
 gi|154356033|gb|ABS77495.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111]
 gi|161761927|gb|ABX77569.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 331]
          Length = 370

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 225/382 (58%), Gaps = 24/382 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+ +   EL+  +   G P      R +Q+ +WI+ RG+ DF  M+D+S+  R 
Sbjct: 1   MTEKINLLNLSEPELQGFIASQGQPL----YRATQLLQWIHQRGVTDFSLMTDLSKPFRQ 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L++   +  PE+  E++S DGT KWL R          +IETV+IP++ RGTLCVSSQV
Sbjct: 57  QLSEASFVRVPELALERVSADGTHKWLFRLADNN-----KIETVFIPDRKRGTLCVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L CSFC TG +   RNLT  EI+ QV LA  LL                   KI+N+
Sbjct: 112 GCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLL---------------KSPYKITNV 156

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N++ V  ++ +         SK R+TLSTSG +P + R+ EE  V LA+S
Sbjct: 157 VMMGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVS 216

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++ LRN+L+P+N+KY L+ LI  CR Y    + R +TFEYVM++G+ND   DA  L
Sbjct: 217 LHAPNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQL 276

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           I++L  +P KINLIPFN + G  Y CS +  I  F +C+  +G+++ +R  RG DI  AC
Sbjct: 277 IRLLADVPCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGAC 336

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL           ++ +Q  G
Sbjct: 337 GQLAGQFHDRTGRHQRWVQKQG 358


>gi|71278436|ref|YP_270905.1| ribosomal RNA large subunit methyltransferase N [Colwellia
           psychrerythraea 34H]
 gi|123774847|sp|Q47WB7|RLMN_COLP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|71144176|gb|AAZ24649.1| radical SAM enzyme, Cfr family [Colwellia psychrerythraea 34H]
          Length = 386

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 158/372 (42%), Positives = 212/372 (56%), Gaps = 21/372 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+    + + E L  IG        R  QI KWIY  G  DF+ M++I++++R  L 
Sbjct: 7   KVNLLNFDHKSMREYLESIG----EKPFRADQIMKWIYHFGYSDFEQMTNINKKLREKLQ 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++  I  P+I ++++S DGT K+ L+       G  E+ETV+IPE  R TLCVSSQVGC+
Sbjct: 63  RNCIISAPDISEKQVSEDGTIKYALKLE-----GGQEVETVWIPENDRATLCVSSQVGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T  Q   RNL+  EI+ QV    + +G              +  R I+NIVMM
Sbjct: 118 LECTFCATAQQGFNRNLSMAEIIGQVWRVANDIG----------ATRIAGTRPITNIVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  N+  +L    + +G   SKRR+T+STSG VP +  +  +I   LAIS+HA
Sbjct: 168 GMGEPLLNMKNLIPALDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKIDCALAISIHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLIK 304
            +N LR+ LVPIN+KYPLE  I A   Y   S A +  T EYVML  +NDS   A  L  
Sbjct: 228 PNNKLRDELVPINKKYPLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDSTDQAHELAH 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            LKG+P+KINLIPFNP+PG  Y  S    I  F + ++  G +   R  RG DI AACGQ
Sbjct: 288 ALKGLPSKINLIPFNPYPGSPYSRSSNSRIDRFDKVLQSYGLTVITRRTRGEDIDAACGQ 347

Query: 365 LKS-LSKRIPKV 375
           L   +  R  + 
Sbjct: 348 LAGDVFDRTKRS 359


>gi|315646180|ref|ZP_07899300.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
           vortex V453]
 gi|315278379|gb|EFU41695.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
           vortex V453]
          Length = 346

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 129/369 (34%), Positives = 202/369 (54%), Gaps = 25/369 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +     EEL+    + G P      R +QI+ W+YV+ + DF+ M+++S+E+R  L 
Sbjct: 2   KPFIYDYSLEELQAWAQENGEPA----FRGTQIYDWLYVKRVNDFEEMTNLSKELRGKLE 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q FS +    + +  S DGT K+L             IETV +      ++CV++QVGC 
Sbjct: 58  QQFSFVTLSEITKLESKDGTVKFLFGLHDD-----HAIETVIMKHNYGNSICVTTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L RNLT+ EI+ QV+ A+ +              +   G ++S+IV+M
Sbjct: 113 IGCTFCASTLGGLKRNLTSGEIVAQVVQAQKI--------------LDKTGERVSSIVIM 158

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEP  N++   K L       GL+  +R IT+STSG VPNI +  EE   + LAIS+H
Sbjct: 159 GSGEPFENYEATMKFLRTMIHEKGLNIGQRHITVSTSGIVPNIYKFTEENTQINLAISIH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR+ L+P+NR++P + +I++ RHY   +   RITFEY ++ G+ND    A  L  
Sbjct: 219 APNDKLRSKLMPVNRRFPFDDVIESLRHYQAKTGR-RITFEYALIGGVNDQVEHAEELAD 277

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++K +   +NLIP N  P  +Y+ + + DI  F   +   G +  IR  +G DI AACGQ
Sbjct: 278 VIKDMNCFVNLIPVNHVPERKYVRTSRNDIFKFQRALADKGVNVTIRREQGHDIAAACGQ 337

Query: 365 LKSLSKRIP 373
           L++    + 
Sbjct: 338 LRAKHMELR 346


>gi|27467811|ref|NP_764448.1| hypothetical protein SE0893 [Staphylococcus epidermidis ATCC 12228]
 gi|251810648|ref|ZP_04825121.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876350|ref|ZP_06285217.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis SK135]
 gi|293366817|ref|ZP_06613493.1| cfr family radical SAM enzyme [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81843839|sp|Q8CSW0|RLMN_STAES RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|27315355|gb|AAO04490.1|AE016746_280 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|251805808|gb|EES58465.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295375|gb|EFA87902.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis SK135]
 gi|291319118|gb|EFE59488.1| cfr family radical SAM enzyme [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329736269|gb|EGG72541.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
           VCU028]
 gi|329736607|gb|EGG72873.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
           VCU045]
          Length = 364

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 207/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+S+  +  +E+++ L+  G      + R  QI++W+Y + +     M+++S+E+R +L
Sbjct: 17  EKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQIL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             HF++     V ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 73  KDHFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H   +++R+ L+PINR Y ++ L++A R+Y   +N  R+TFEY +  G+ND    A +L 
Sbjct: 234 HGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNR-RVTFEYGLFGGVNDQLEHARDLA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|260776635|ref|ZP_05885530.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607858|gb|EEX34123.1| ribosomal RNA large subunit methyltransferase N [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 374

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 143/380 (37%), Positives = 208/380 (54%), Gaps = 23/380 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+   R+ + +   +          R  Q+ KWIY  G+ DF+ M++I++++R 
Sbjct: 2   TTEKINLLDFDRQGMRKFFAE---ELGEKAFRAEQVMKWIYHFGVDDFEKMTNINKKLRE 58

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I  P + + + S DGT KW ++          ++ETVYIPE  R TLCVSSQV
Sbjct: 59  KLIHRCEIKAPVVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC T  Q   RNL   EI+ QV  A   +G          +   +  R I+N+
Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N  N+  +L +  D +G   SKRR+T+STSG V  + ++  +I V LAIS
Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQIDVALAIS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300
           LHA ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A 
Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++K  P KINLIPFNP+PG  Y       I  F + + +  ++  +R  RG DI A
Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342

Query: 361 ACGQLKSLSKRIPKVPRQEM 380
           ACGQL      I +  R  M
Sbjct: 343 ACGQLVGDV--IDRTKRTAM 360


>gi|223043733|ref|ZP_03613776.1| radical SAM enzyme, Cfr family [Staphylococcus capitis SK14]
 gi|222442830|gb|EEE48932.1| radical SAM enzyme, Cfr family [Staphylococcus capitis SK14]
          Length = 364

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K+S+  +  +E+++ L+  G      + R  QI++W+Y + +     M+++S+++R +L
Sbjct: 17  DKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQVL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F++     V ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 73  KDNFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H   +++R+ L+PINR Y +E L++A ++Y   +N  R+TFEY +  G+ND    A +L 
Sbjct: 234 HGAKDEIRSRLMPINRAYNVEKLMEAIKYYQEQTNR-RVTFEYGLFGGVNDQLEHARDLA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|281601919|gb|ADA74903.1| protein yfgB [Shigella flexneri 2002017]
          Length = 340

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 151/350 (43%), Positives = 202/350 (57%), Gaps = 19/350 (5%)

Query: 38  IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI 97
           + KW+Y     +F  M+DI++ +R  L +   I  PE+V+E+ S DGT KW +       
Sbjct: 1   MMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD--- 57

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
                +ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV  A  +
Sbjct: 58  ---QRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKI 114

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
           +G              +  R I+N+VMMGMGEPL N +NV  ++ I  D  G   SKRR+
Sbjct: 115 VG----------AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRV 164

Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
           TLSTSG VP + ++G+ I V LAISLHA ++++R+ +VPIN+KY +E  + A R Y   S
Sbjct: 165 TLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKS 224

Query: 278 NAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIV 335
           NA   R+T EYVML  +ND    A  L ++LK  P KINLIP+NP+P   Y  S    I 
Sbjct: 225 NANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPDAPYGRSSNSRID 284

Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
            FS+ +   G+++ +R  RG DI AACGQL      R  +  R+ MQ   
Sbjct: 285 RFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEA 334


>gi|55823590|ref|YP_142031.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           thermophilus CNRZ1066]
 gi|116628382|ref|YP_821001.1| hypothetical protein STER_1660 [Streptococcus thermophilus LMD-9]
 gi|81558991|sp|Q5LY98|RLMN_STRT1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|122267023|sp|Q03J17|RLMN_STRTD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|55739575|gb|AAV63216.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
 gi|116101659|gb|ABJ66805.1| Predicted Fe-S-cluster redox enzyme [Streptococcus thermophilus
           LMD-9]
          Length = 389

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 215/373 (57%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL +  ++ G      + R +QIW W+Y + ++ F+ M++IS++    LN
Sbjct: 25  KPSIYGLTRDELIDWAVEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 81  DNFCVNPLKQRIVQESKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 135

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+LTA EI+ Q++L +    D               G ++S++V+M
Sbjct: 136 IGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVVVM 183

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV + L   ++  GL+   R IT+STSG  P I     E + V LA+SLH
Sbjct: 184 GIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVSLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INR +PLE L +A  +Y   +N  R+TFEY+ML  +ND P +A  L  
Sbjct: 244 APNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNR-RVTFEYIMLNEVNDHPENAQELAD 302

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + INLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDHYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 362

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 363 CGQLRSNTMKRDR 375


>gi|153208845|ref|ZP_01947069.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177']
 gi|165921447|ref|ZP_02219635.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 334]
 gi|212218666|ref|YP_002305453.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154]
 gi|254807166|sp|B6J7Q9|RLMN_COXB1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120575696|gb|EAX32320.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177']
 gi|165916762|gb|EDR35366.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 334]
 gi|212012928|gb|ACJ20308.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154]
          Length = 370

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 225/382 (58%), Gaps = 24/382 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+ +   EL+  +   G P      R +Q+ +WI+ RG+ DF  M+D+S+  R 
Sbjct: 1   MTEKINLLNLSETELQGFIASQGQPL----YRATQLLQWIHQRGVTDFSLMTDLSKPFRQ 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L++   +  PE+  E++S DGT KWL R          +IETV+IP++ RGTLCVSSQV
Sbjct: 57  QLSEASFVRVPELALERVSADGTHKWLFRLADNN-----KIETVFIPDRKRGTLCVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L CSFC TG +   RNLT  EI+ QV LA  LL                   KI+N+
Sbjct: 112 GCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLL---------------KSPYKITNV 156

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N++ V  ++ +         SK R+TLSTSG +P + R+ EE  V LA+S
Sbjct: 157 VMMGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVS 216

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++ LRN+L+P+N+KY L+ LI  CR Y    + R +TFEYVM++G+ND   DA  L
Sbjct: 217 LHAPNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQL 276

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           I++L  +P KINLIPFN + G  Y CS +  I  F +C+  +G+++ +R  RG DI  AC
Sbjct: 277 IRLLADVPCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGAC 336

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL           ++ +Q  G
Sbjct: 337 GQLAGQFHDRTGRHQRWVQKQG 358


>gi|314933392|ref|ZP_07840757.1| radical SAM enzyme, Cfr family [Staphylococcus caprae C87]
 gi|313653542|gb|EFS17299.1| radical SAM enzyme, Cfr family [Staphylococcus caprae C87]
          Length = 364

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K+S+  +  +E+++ L+  G      + R  QI++W+Y + +     M+++S+E+R +L
Sbjct: 17  DKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKELRQVL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F++     V ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 73  KDNFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    EE I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H   +++R+ L+PINR Y +E L++A ++Y   +N  R+TFEY +  G+ND    A +L 
Sbjct: 234 HGAKDEIRSRLMPINRAYNVEKLMEAIKYYQEQTNR-RVTFEYGLFGGVNDQLEHARDLA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++K +   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|228477270|ref|ZP_04061908.1| radical SAM enzyme, Cfr family [Streptococcus salivarius SK126]
 gi|228251289|gb|EEK10460.1| radical SAM enzyme, Cfr family [Streptococcus salivarius SK126]
          Length = 389

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 216/373 (57%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL +  ++ G      + R +QIW W+Y + ++ F+ M++IS++    LN
Sbjct: 25  KPSIYGLTRDELIDWAMEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 81  ENFCVNPLKQRIVQESKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 135

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+LTA EI+ Q++L +    D               G ++S++V+M
Sbjct: 136 IGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVVVM 183

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV + L   ++  GL+   R IT+STSG  P I     E + V LA+SLH
Sbjct: 184 GIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVSLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INR +PLE L +A  +Y   +N  R+TFEY+ML  +ND P +A  L  
Sbjct: 244 APNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNR-RVTFEYIMLNEVNDHPENAQELAD 302

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + INLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 362

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 363 CGQLRSNTMKRDR 375


>gi|84387623|ref|ZP_00990640.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01]
 gi|84377468|gb|EAP94334.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01]
          Length = 380

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 145/387 (37%), Positives = 211/387 (54%), Gaps = 27/387 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+   R+ L +   +          R  Q+ KWIY  G+ DF+ M++I++++R  L 
Sbjct: 5   KVNLLDFDRKGLRKFFTE---ELNEKAFRAEQVMKWIYHFGVDDFEQMNNINKKLREKLL 61

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I+ P + + + S DGT KW +           ++ETVYIP+  R TLCVSSQVGC+
Sbjct: 62  HRCEIVAPIVSEAQHSADGTIKWAMSVGD------QDVETVYIPDGDRATLCVSSQVGCA 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ Q+  A   +G          +   +  R I+N+VMM
Sbjct: 116 LECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKDTGRRPITNVVMM 165

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N  N+  SL +  D +G S SKRR+T+STSG V  + ++ + I V LAISLHA
Sbjct: 166 GMGEPLLNMKNLIPSLELMLDDLGFSLSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHA 225

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303
            ++ LR+ ++PIN ++ ++  + + R Y   SNA R  +T EYV+L  +ND    A  L 
Sbjct: 226 PNDALRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++K  P KINLIPFNP+PG  Y       I  F + +    Y+  +R  RG DI AACG
Sbjct: 286 ELMKETPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMEYNYTVTVRKTRGDDIDAACG 345

Query: 364 QL------KSLSKRIPKVPRQEMQITG 384
           QL      ++   ++ K   +   I G
Sbjct: 346 QLVGDVIDRTKRTKMLKAASEANLIAG 372


>gi|283852881|ref|ZP_06370142.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. FW1012B]
 gi|283571710|gb|EFC19709.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. FW1012B]
          Length = 350

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 138/362 (38%), Positives = 201/362 (55%), Gaps = 22/362 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +LI +   ELE  ++ +G P      R  Q+W+W++ +G RD   M+D S+ +R  L +
Sbjct: 2   TNLIDLTFHELETLVVSLGEPP----YRARQVWQWLWQKGCRDIAAMTDTSKALRARLAE 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             +I +P++     S DGT K+LL       G    +E V IPEK   T C+S+QVGC++
Sbjct: 58  VATIAWPQVARVSESADGTVKFLLTL-----GDGESVECVLIPEKDHYTACLSTQVGCAM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG     RN+T  E+L QVL+AR              ++   V   + N+V MG
Sbjct: 113 GCAFCATGMMGFRRNMTPGEMLGQVLVARQY------------LLEKGVALALRNLVFMG 160

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+DN+ K+L       G   S RRIT+ST+G   ++  +G      LA+SLHA 
Sbjct: 161 MGEPLLNYDNLVKTLEALHHPQGFDISGRRITVSTAGVARHLLDLGRTGLCSLAVSLHAP 220

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +  LR  ++P   K PL  LI+  R YP +    R+TFEY+ML G+NDS  DA  L+++L
Sbjct: 221 TQALREKIMPGAAKLPLGELIEILRQYP-MKPRERLTFEYLMLDGVNDSLEDARELVRLL 279

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             + AK+NLI FN  PG  Y     + +  F E +K  G ++ +R  +G DI AACGQL+
Sbjct: 280 SRVKAKVNLIVFNATPGLPYQPPPAERVFAFQEALKAKGLTATVRKSKGADIAAACGQLR 339

Query: 367 SL 368
           + 
Sbjct: 340 AE 341


>gi|212212364|ref|YP_002303300.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212]
 gi|254807167|sp|B6IZM7|RLMN_COXB2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|212010774|gb|ACJ18155.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212]
          Length = 370

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 159/382 (41%), Positives = 225/382 (58%), Gaps = 24/382 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K +L+ +   EL+  +   G P      R +Q+ +WI+ RG+ DF  M+D+S+  R 
Sbjct: 1   MTEKINLLNLSEPELQGFIASQGQPL----YRATQLLQWIHQRGVTDFSLMTDLSKPFRQ 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L++   +  PE+  E++S DGT KWL R          +IETV+IP++ RGTLCVSSQV
Sbjct: 57  QLSEASFVRVPELALERVSADGTHKWLFRLADNN-----KIETVFIPDRKRGTLCVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L CSFC TG +   RNLT  EI+ QV LA  LL                   KI+N+
Sbjct: 112 GCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLL---------------KSPYKITNV 156

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N++ V  ++ +         SK R+TLSTSG +P + R+ EE  V LA+S
Sbjct: 157 VMMGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVS 216

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++ LRN+L+P+N+KY L+ LI  CR Y    + R +TFEYVM++G+ND   DA  L
Sbjct: 217 LHAPNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKRL 276

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           I++L  +P KINLIPFN + G  Y CS +  I  F +C+  +G+++ +R  RG DI  AC
Sbjct: 277 IRLLADVPCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGAC 336

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL           ++ +Q  G
Sbjct: 337 GQLAGQFHDRTGRHQRWVQKQG 358


>gi|55821670|ref|YP_140112.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           thermophilus LMG 18311]
 gi|81560179|sp|Q5M2V3|RLMN_STRT2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|55737655|gb|AAV61297.1| conserved hypothetical protein [Streptococcus thermophilus LMG
           18311]
 gi|312279010|gb|ADQ63667.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
           thermophilus ND03]
          Length = 389

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 135/373 (36%), Positives = 216/373 (57%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL +  ++ G      + R +QIW W+Y + ++ F+ M++IS++    LN
Sbjct: 25  KPSIYGLTRDELIDWAVEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 81  DNFCVNPLKQRIVQESKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 135

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+LTA EI+ Q++L +    D               G ++S++V+M
Sbjct: 136 IGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVVVM 183

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV + L   ++  GL+   R IT+STSG  P I     E + V LA+SLH
Sbjct: 184 GIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVSLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INR +PLE L +A  +Y   +N  R+TFEY+ML  +ND P +A  L  
Sbjct: 244 APNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNR-RVTFEYIMLNEVNDHPENAQELAD 302

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + INLIP+NP    + Y  S ++ + TF + +K++G +  +R   G DI AA
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDHYSRSTKERVATFYDVLKKNGVNCVVRQEHGTDIDAA 362

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 363 CGQLRSNTMKRDR 375


>gi|322373635|ref|ZP_08048171.1| radical SAM enzyme, Cfr family [Streptococcus sp. C150]
 gi|321278677|gb|EFX55746.1| radical SAM enzyme, Cfr family [Streptococcus sp. C150]
          Length = 389

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 135/373 (36%), Positives = 216/373 (57%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ REEL +  ++ G      + R +QIW W+Y + ++ F+ M++IS++    LN
Sbjct: 25  KPSIYGLTREELIDWAMEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 81  ENFCVNPLKQRIVQESKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 135

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+LTA EI+ Q++L +    D               G ++S++V+M
Sbjct: 136 IGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVVVM 183

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV + L   ++  GL+   R IT+STSG  P I     E + V LA+SLH
Sbjct: 184 GIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVSLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INR +PLE L +A  +Y   +N  R+TFEY+ML  +ND P +A  L  
Sbjct: 244 APNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNR-RVTFEYIMLNEVNDHPENAQELAD 302

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + INLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 362

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 363 CGQLRSNTMKRDR 375


>gi|73662863|ref|YP_301644.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|123775339|sp|Q49WZ9|RLMN_STAS1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|72495378|dbj|BAE18699.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 364

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 210/370 (56%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+S+  +  +E+++ L++ G      + R  QI++W+Y + + D   M+++S+E+R +L
Sbjct: 17  EKQSIYSLRYDEMQDWLVQNG----QQKFRAKQIFEWLYEKRVDDIDDMTNLSKELREVL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F++     V ++ S DGT K+L             IETV +  +   ++CV++QVGC
Sbjct: 73  KDNFTMTTMTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +  L +                 ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TEERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D  GL+   R IT+STSG +P I    +E I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLKIVNDDNGLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H  ++++R+ L+PINR Y +E L++A  +Y   +N  RITFEY +  G+ND    A  L 
Sbjct: 234 HGANDEIRSRLMPINRAYNVEKLMEAIHYYQEKTNR-RITFEYGLFGGVNDQIEHARELA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +++ +   +NLIP N  P   Y+ + ++DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIQELNCHVNLIPVNHVPERNYVKTPKEDIFKFEKELKRLGINATIRREQGADIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERKVE 362


>gi|110802908|ref|YP_699026.1| ribosomal RNA large subunit methyltransferase N [Clostridium
           perfringens SM101]
 gi|123341702|sp|Q0SS81|RLMN_CLOPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|110683409|gb|ABG86779.1| radical SAM enzyme, Cfr family [Clostridium perfringens SM101]
          Length = 347

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 146/362 (40%), Positives = 213/362 (58%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++    EEL+E + + G        R  QI+ WIY + + +F+ M +IS+ +   L++
Sbjct: 2   KNILDFTLEELKEWMKENG----ENAFRAKQIFDWIYKKEVFNFEEMKNISKALIGKLSE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  PE++D   S  DGTRK LL      +G    IE V +  K   ++CVS+Q+GC 
Sbjct: 58  NFYIGIPEVIDYLSSSEDGTRKILL-----GLGDGNIIECVIMKYKYGNSICVSTQIGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +  + +VRNLTA EIL +VL+ + LLG+                 +ISNIV+M
Sbjct: 113 MGCKFCASTLEGMVRNLTAGEILSEVLIGQKLLGE-----------------RISNIVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           G GEPL N+DNV K L I +   GL+  +R ITLST G VP I  + + E+ V LAISLH
Sbjct: 156 GSGEPLDNYDNVMKFLEIVNADYGLNIGQRHITLSTCGLVPKIREMADKEMQVTLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AVS++ R  ++PI  KY +  ++DAC +Y   +   RITFEY ++ G+ND+  DA +L +
Sbjct: 216 AVSDEKRKTIMPIANKYSISEILDACNYYIEKTGR-RITFEYSLVSGVNDTKEDAKSLGR 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+   +NLIP N     E+  S +KDI TF   +K  G  + +R   G DI AACGQ
Sbjct: 275 LLKGMLCHVNLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|312863236|ref|ZP_07723474.1| 23S rRNA m2A2503 methyltransferase [Streptococcus vestibularis
           F0396]
 gi|322516113|ref|ZP_08069048.1| cfr family radical SAM enzyme [Streptococcus vestibularis ATCC
           49124]
 gi|311100772|gb|EFQ58977.1| 23S rRNA m2A2503 methyltransferase [Streptococcus vestibularis
           F0396]
 gi|322125408|gb|EFX96758.1| cfr family radical SAM enzyme [Streptococcus vestibularis ATCC
           49124]
          Length = 389

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 216/373 (57%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL +  ++ G      + R +QIW W+Y + ++ F+ M++IS++    LN
Sbjct: 25  KHSIYGLTRDELIDWAMEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 81  ENFCVNPLKQRIVQESKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 135

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+LTA EI+ Q++L +    D               G ++S++V+M
Sbjct: 136 IGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVVVM 183

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV + L   ++  GL+   R IT+STSG  P I     E + V LA+SLH
Sbjct: 184 GIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVSLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INR +PLE L +A  +Y   +N  R+TFEY+ML  +ND P +A  L  
Sbjct: 244 APNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNR-RVTFEYIMLNEVNDHPENAQELAD 302

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + INLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 362

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 363 CGQLRSNTMKRDR 375


>gi|237745509|ref|ZP_04575989.1| radical SAM enzyme [Oxalobacter formigenes HOxBLS]
 gi|229376860|gb|EEO26951.1| radical SAM enzyme [Oxalobacter formigenes HOxBLS]
          Length = 387

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 154/383 (40%), Positives = 218/383 (56%), Gaps = 20/383 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + +L+G    +L E    +         R  Q+ +WI+  G+ DF GM+D+++ +R  L 
Sbjct: 5   RTNLLGFTPVQLVEYCKTL----NEKPFRAKQLQRWIHQSGVSDFAGMTDLAKSLRGKLE 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  P+++ + +S DGTRKWLL      +G    IETVYIPE +RGTLCVS+Q GC+
Sbjct: 61  GCAEVRAPKVLKDHLSADGTRKWLL-----DVGEGNAIETVYIPEDNRGTLCVSTQAGCA 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q   RNLT +EI+ Q+ +A             + M      R+ISN+VMM
Sbjct: 116 VNCLFCSTGKQGFSRNLTTDEIIGQLWMAE------FAIRRSKNMAANQSERQISNVVMM 169

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFD    +L +  D      S+RR+T+STSG VP I R+ +E  V LA+SLHA
Sbjct: 170 GMGEPLFNFDASVNALKLMLDDNAYGLSRRRVTVSTSGVVPMIDRLAKECPVALAVSLHA 229

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            S+ LR++LVP+NRK+PL  L+ ACR Y   +    ITFEY ML GIND+   A  L+++
Sbjct: 230 PSDKLRDMLVPLNRKHPLSELMAACRRYLEYAPRDFITFEYCMLDGINDTDEHAKELVEL 289

Query: 306 LKG----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +K     +  K+NLIPFN  P      S    I  F++ +  +G  + +R  RG DI AA
Sbjct: 290 VKHGSDPVSCKLNLIPFNSIPMPGLKRSSDARISAFAKILLDAGIVTTVRKTRGEDIEAA 349

Query: 362 CGQLKSLSKRIPKVPRQEMQITG 384
           CG L    +   +V R+ M  +G
Sbjct: 350 CGLLAGDVRDRTRV-RERMAESG 371


>gi|114332136|ref|YP_748358.1| radical SAM enzyme, Cfr family protein [Nitrosomonas eutropha C91]
 gi|122313183|sp|Q0AE39|RLMN_NITEC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|114309150|gb|ABI60393.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosomonas eutropha C91]
          Length = 379

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/374 (39%), Positives = 215/374 (57%), Gaps = 14/374 (3%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+   +  L     ++G        R  Q+ +W++  G  +F  MSD+++  R  L +
Sbjct: 2   INLLDFNKTGLIHFCEEMG----EKPYRARQLLRWVHRFGKTEFIEMSDLAKTFRQKLME 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +  PEI+ +  + DGTRKWLL       G    +E V+IPE +RGTLCVSSQVGC+L
Sbjct: 58  RAVVHPPEIISDHTAGDGTRKWLL-----STGTGNAVEMVFIPEPNRGTLCVSSQVGCAL 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSL----LGDFPGCEDIEGMVIPSVGRK-ISN 181
            CSFC TG Q   RNL+  EI+ Q+  A  L    +G+    +  +     +  R+ ++N
Sbjct: 113 ACSFCSTGRQGFNRNLSVAEIIGQLWWANRLLEGQVGELFSPDVAQIRADNTDTRRPVTN 172

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL NF+NV  +L +         S+RR+T+STSG VP + R+ E   V LA+
Sbjct: 173 VVMMGMGEPLANFENVVTALDLMLSDDAYGLSRRRVTVSTSGLVPALDRLRERCPVALAV 232

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA ++ LR+ LVPIN+KYP+  L+ AC  Y   +    ITFEYVML+ +NDS   A  
Sbjct: 233 SLHAPNDALRDQLVPINKKYPIRDLLAACERYLPAAPRDFITFEYVMLRDVNDSIALARE 292

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++++ IP K+NLIPFN + G  Y  S+   I  F + + ++G  + +R  RG DI AA
Sbjct: 293 LVQVVRNIPCKLNLIPFNTFAGSGYERSNTDAIDNFRDVLMQAGIVTTVRKTRGDDIAAA 352

Query: 362 CGQLKSLSKRIPKV 375
           CGQL    K   + 
Sbjct: 353 CGQLAGQVKDKTRR 366


>gi|76787054|ref|YP_329191.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           agalactiae A909]
 gi|123730855|sp|Q3K2R2|RLMN_STRA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|76562111|gb|ABA44695.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae A909]
          Length = 368

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 133/380 (35%), Positives = 212/380 (55%), Gaps = 26/380 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G      + R SQIW W+Y + ++ F  M++IS++   LLN
Sbjct: 11  KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 67  ENFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI  Q++L +    +               G ++S+IV+M
Sbjct: 122 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 169

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV K L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 170 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 229

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +PLE L  A  +Y   +N  R+TFEY+ML G+ND+P +A  L  
Sbjct: 230 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 288

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 348

Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
           CGQL+S + +  +   +  Q
Sbjct: 349 CGQLRSNTMKRDRQKAKVGQ 368


>gi|126640570|ref|YP_001083554.1| putative Fe-S-cluster redox enzyme [Acinetobacter baumannii ATCC
           17978]
          Length = 376

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 165/381 (43%), Positives = 225/381 (59%), Gaps = 24/381 (6%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M R ELE+    IG      + R  Q+ KWI+   + DF  M++IS ++R  L Q   I 
Sbjct: 1   MSRAELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIK 56

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSSQVGCSLT 127
            PE+V    S DGTRKW+ R      G    +ETV IP +     R TLC+SSQVGC+L 
Sbjct: 57  APEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISSQVGCALD 113

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC TG Q   R+LT +EI+ Q+ +A     +     + E        R ++N+VMMGM
Sbjct: 114 CSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERE--------RSVTNVVMMGM 165

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N+D V  S+ I  D      SKRR+TLSTSG VP I ++ ++I V LAISLHA +
Sbjct: 166 GEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPN 225

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSPRDALNLI 303
           ++LRN LVPIN+KYPL  LI AC+ Y       S  + +T EYVML+G+ND P  A  L+
Sbjct: 226 DELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQPEHAQQLL 285

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LK +P+KINLIPFNP+P   Y  S +  I++F + +  +G+   IR  RG DI AACG
Sbjct: 286 KLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACG 345

Query: 364 QL-KSLSKRIPKVPRQEMQIT 383
           QL   ++ R  +  + + ++ 
Sbjct: 346 QLVGQVADRTRRAEQWQKKVA 366


>gi|77411450|ref|ZP_00787796.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae CJB111]
 gi|77162536|gb|EAO73501.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae CJB111]
          Length = 368

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 133/380 (35%), Positives = 212/380 (55%), Gaps = 26/380 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G      + R SQIW W+Y + ++ F  M++IS++   LLN
Sbjct: 11  KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 67  ENFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI  Q++L +    +               G ++S+IV+M
Sbjct: 122 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 169

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV K L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 170 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 229

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +PLE L  A  +Y   +N  R+TFEY+ML G+ND+P +A  L  
Sbjct: 230 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 288

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 348

Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
           CGQL+S + +  +   +  Q
Sbjct: 349 CGQLRSNTMKRDRQKAKVGQ 368


>gi|18310722|ref|NP_562656.1| radical SAM enzyme, Cfr family [Clostridium perfringens str. 13]
 gi|110801148|ref|YP_696426.1| radical SAM protein [Clostridium perfringens ATCC 13124]
 gi|168207267|ref|ZP_02633272.1| radical SAM enzyme, Cfr family [Clostridium perfringens E str.
           JGS1987]
 gi|168210627|ref|ZP_02636252.1| radical SAM enzyme, Cfr family [Clostridium perfringens B str. ATCC
           3626]
 gi|168217027|ref|ZP_02642652.1| radical SAM enzyme, Cfr family [Clostridium perfringens NCTC 8239]
 gi|182625883|ref|ZP_02953649.1| radical SAM enzyme, Cfr family [Clostridium perfringens D str.
           JGS1721]
 gi|81766963|sp|Q8XJL6|RLMN_CLOPE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123049744|sp|Q0TPL4|RLMN_CLOP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|18145403|dbj|BAB81446.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110675795|gb|ABG84782.1| radical SAM enzyme, Cfr family [Clostridium perfringens ATCC 13124]
 gi|170661362|gb|EDT14045.1| radical SAM enzyme, Cfr family [Clostridium perfringens E str.
           JGS1987]
 gi|170711321|gb|EDT23503.1| radical SAM enzyme, Cfr family [Clostridium perfringens B str. ATCC
           3626]
 gi|177908917|gb|EDT71409.1| radical SAM enzyme, Cfr family [Clostridium perfringens D str.
           JGS1721]
 gi|182380930|gb|EDT78409.1| radical SAM enzyme, Cfr family [Clostridium perfringens NCTC 8239]
          Length = 347

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 145/362 (40%), Positives = 213/362 (58%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++    EEL+E + + G        R  QI+ WIY + + +F+ M +IS+ +   L++
Sbjct: 2   KNILDFTLEELKEWMKENGESA----FRAKQIFDWIYKKEVFNFEEMKNISKALIGKLSE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  PE++D   S  DGTRK LL      +G    IE V +  K   ++CVS+Q+GC 
Sbjct: 58  NFYIGIPEVIDYLSSSEDGTRKILL-----GLGDGNIIECVIMRYKYGNSICVSTQIGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +  + +VRNLTA EIL +VL+ + LLG+                 +ISNIV+M
Sbjct: 113 MGCKFCASTLEGMVRNLTAGEILSEVLIGQKLLGE-----------------RISNIVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           G GEPL N+DNV K L + +   GL+  +R ITLST G VP I  + + E+ V LAISLH
Sbjct: 156 GSGEPLDNYDNVMKFLELVNADYGLNIGQRHITLSTCGLVPKIREMADKEMQVTLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AVS++ R  ++PI  KY +  ++DAC +Y   +   RITFEY ++ G+ND+  DA +L +
Sbjct: 216 AVSDEKRKTIMPIANKYSISEILDACNYYIEKTGR-RITFEYSLVSGVNDTKEDAKSLGR 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+   +NLIP N     E+  S +KDI TF   +K  G  + +R   G DI AACGQ
Sbjct: 275 LLKGMLCHVNLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|22536637|ref|NP_687488.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           agalactiae 2603V/R]
 gi|76797765|ref|ZP_00780032.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 18RS21]
 gi|77405571|ref|ZP_00782661.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae H36B]
 gi|81588624|sp|Q8E1A3|RLMN_STRA5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|22533475|gb|AAM99360.1|AE014212_19 conserved hypothetical protein TIGR00048 [Streptococcus agalactiae
           2603V/R]
 gi|76586913|gb|EAO63404.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 18RS21]
 gi|77175793|gb|EAO78572.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae H36B]
          Length = 368

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 134/380 (35%), Positives = 212/380 (55%), Gaps = 26/380 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G      + R SQIW W+Y + ++ F  M++IS++   LLN
Sbjct: 11  KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 67  ENFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI  Q++L +    +               G ++S+IV+M
Sbjct: 122 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 169

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV K L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 170 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 229

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INR +PLE L  A  +Y   +N  R+TFEY+ML G+ND+P +A  L  
Sbjct: 230 APNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 288

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 348

Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
           CGQL+S + +  +   +  Q
Sbjct: 349 CGQLRSNTMKRDRQKAKVGQ 368


>gi|320546296|ref|ZP_08040616.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812]
 gi|320449073|gb|EFW89796.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812]
          Length = 366

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 214/373 (57%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL E  ++ G      + R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 9   KPSIYGLTRDELIEWAIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAILN 64

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + + DGT K+L   P   +     IETV + +    ++CV+SQVGC+
Sbjct: 65  ENFCVNPLKQRIVQEASDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTSQVGCN 119

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +G  K  R+LT+ EI  Q+++ +    +                 ++S++V+M
Sbjct: 120 MGCSFCASGLIKKQRDLTSGEITSQIMMVQKYFDE------------RGQDERVSHVVVM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV + +   ++  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 168 GIGEPFDNYDNVLRFVRTINNDNGLAIGARHITISTSGLAHKIREFAHESLQVNLAVSLH 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ +NR +PLE L  A  +Y   +N  R+TFEY+ML  +NDSP +A  L  
Sbjct: 228 APNNELRSQIMRVNRSFPLEKLFAAIEYYVETTNR-RVTFEYIMLNDVNDSPENAQELAD 286

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + INLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYSRSSKEHVAAFYDVLKKNGVNCVVRQEHGTDIDAA 346

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 347 CGQLRSNTMKRDR 359


>gi|30248171|ref|NP_840241.1| hypothetical protein NE0145 [Nitrosomonas europaea ATCC 19718]
 gi|30180056|emb|CAD84056.1| Conserved hypothetical protein 48 [Nitrosomonas europaea ATCC
           19718]
          Length = 361

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 154/361 (42%), Positives = 208/361 (57%), Gaps = 12/361 (3%)

Query: 29  RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88
                R  Q+ +W++  G  DF  MSD+++  RH L +   +  PEIV +  + DGTRKW
Sbjct: 2   GEKPYRARQLLRWVHQSGKTDFMEMSDLAKGFRHKLMECAVVQLPEIVSDHTAGDGTRKW 61

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           LL       G    +E V+IPE SRGTLCVSSQVGC+L CSFC TG Q   RNL+  EI+
Sbjct: 62  LL-----STGAGNAVEMVFIPEPSRGTLCVSSQVGCALACSFCSTGRQGFNRNLSVAEII 116

Query: 149 LQVLLARSL-----LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
            Q+  A  L        FP          P   R ++N+VMMGMGEPL NF+N+  +L +
Sbjct: 117 GQLWWANRLLEAGSHDPFPLDTTRVQTDKPETRRPVTNVVMMGMGEPLANFENLVTALDL 176

Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263
                    S+RR+T+STSG VP + R+ E   V LA+SLHA ++ LR+ LVPIN+KYP+
Sbjct: 177 MLSDDAYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPNDALRDQLVPINKKYPI 236

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
             L+ AC  Y   +    ITFEYVMLKG+NDS   A  L+++++ +P K+NLIPFN + G
Sbjct: 237 RDLLAACERYLPAAPRDFITFEYVMLKGVNDSVALARELVQLVRNVPCKLNLIPFNAFSG 296

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
             Y  S  + I  F + + ++G  + +R  RG DI AACGQL    +   K  R     T
Sbjct: 297 SGYERSGAEAIGNFRDVLMQAGIVTTVRKTRGDDIAAACGQLAGQVR--DKTRRTSGCGT 354

Query: 384 G 384
           G
Sbjct: 355 G 355


>gi|317495216|ref|ZP_07953586.1| cfr family radical SAM enzyme [Gemella moribillum M424]
 gi|316914638|gb|EFV36114.1| cfr family radical SAM enzyme [Gemella moribillum M424]
          Length = 377

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 124/372 (33%), Positives = 203/372 (54%), Gaps = 25/372 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +   +K S+  +  ++LEE L+ IG      + R  QI+ W+Y + I  F  M ++ + +
Sbjct: 15  LKDFEKMSIYSIRLDQLEEYLVSIG----EKKFRAKQIYDWLYKKRITSFTEMKNVPKSL 70

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           +  L + F I     + ++ S DGT K+L     +       IE+V +  K   +LCV++
Sbjct: 71  QEKLAEEFEITTLNTIIKQESIDGTMKFLFELQDKYT-----IESVLMKNKYGNSLCVTT 125

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C+FC +    L RNL A EI+ QVL  +                +   G +IS
Sbjct: 126 QVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQE--------------LDKRGERIS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           +IV+MG+GEP  N+D +   + I +     +   R IT+STSG VP I     E+I +  
Sbjct: 172 SIVIMGIGEPFENYDEMMDFIKIVNSDESFNIGARHITVSTSGIVPKIYDFANEKIQINF 231

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +N+LR+ ++P+NR Y ++ L++A ++Y   +N  RITFEY ++  +ND    A
Sbjct: 232 AVSLHAPTNELRSKIMPVNRAYNIDKLMEALKYYQKTTNR-RITFEYGLMGKVNDQREHA 290

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L +I+K +   +NLIP N  P   Y+ + + DI  F + +K++  +  IR  +G DI 
Sbjct: 291 EKLSEIIKDLNCHVNLIPINYVPERNYVRTSKNDIFAFEKVLKKNRVNVTIRRTQGDDID 350

Query: 360 AACGQLKSLSKR 371
           AACGQL++  ++
Sbjct: 351 AACGQLRAKERK 362


>gi|168214217|ref|ZP_02639842.1| radical SAM enzyme, Cfr family [Clostridium perfringens CPE str.
           F4969]
 gi|170714277|gb|EDT26459.1| radical SAM enzyme, Cfr family [Clostridium perfringens CPE str.
           F4969]
          Length = 347

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 145/362 (40%), Positives = 213/362 (58%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++    EEL+E + + G        R  QI+ WIY + + +F+ M +IS+ +   L++
Sbjct: 2   KNILDFTLEELKEWMKENGESA----FRAKQIFDWIYKKEVFNFEEMKNISKALIGKLSE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  PE++D   S  DGTRK LL      +G    IE V +  K   ++CVS+Q+GC 
Sbjct: 58  NFYIGIPEVIDYLSSSEDGTRKILL-----GLGDGNIIECVIMRYKYGNSICVSTQIGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +  + +VRNLTA EIL +VL+ + LLG+                 +ISNIV+M
Sbjct: 113 MGCKFCASTLEGMVRNLTAGEILSEVLIGQKLLGE-----------------RISNIVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           G GEPL N+DNV K L + +   GL+  +R ITLST G VP I  + + E+ V LAISLH
Sbjct: 156 GSGEPLDNYDNVMKFLELVNADYGLNIGQRHITLSTCGLVPKIHEMADKEMQVTLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AVS++ R  ++PI  KY +  ++DAC +Y   +   RITFEY ++ G+ND+  DA +L +
Sbjct: 216 AVSDEKRKTIMPIANKYSISEILDACNYYIEKTGR-RITFEYSLVSGVNDTKEDAKSLGR 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+   +NLIP N     E+  S +KDI TF   +K  G  + +R   G DI AACGQ
Sbjct: 275 LLKGMLCHVNLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|323487018|ref|ZP_08092330.1| hypothetical protein HMPREF9474_04081 [Clostridium symbiosum
           WAL-14163]
 gi|323692060|ref|ZP_08106307.1| radical SAM enzyme [Clostridium symbiosum WAL-14673]
 gi|323399666|gb|EGA92052.1| hypothetical protein HMPREF9474_04081 [Clostridium symbiosum
           WAL-14163]
 gi|323503860|gb|EGB19675.1| radical SAM enzyme [Clostridium symbiosum WAL-14673]
          Length = 350

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 119/375 (31%), Positives = 208/375 (55%), Gaps = 29/375 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  +  +  EEL++ L  +G        R  Q+++W++ +    F  M+++S+++R  
Sbjct: 1   MNKTDIKSLTHEELQDLLKGMG----EKPFRAGQLYRWMHEKLAASFDEMTNLSKDLRGK 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L ++ +    + V  +IS  D TRK+L       +     IE+V +  K   ++C+SSQV
Sbjct: 57  LAENCTFTALKPVCVRISQIDDTRKYLFELEDGNV-----IESVLMKYKHGNSVCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L RNLT  E+L Q+   +   G+                 ++SN+
Sbjct: 112 GCRMGCRFCASTLDGLERNLTPSEMLDQIYRIQRDTGE-----------------RVSNV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL N+DN+ + + + +   GL+ S+R +T+ST G VP I ++ EE + + LA+
Sbjct: 155 VVMGSGEPLDNYDNLIRFIRLLTGEGGLNISQRNVTVSTCGIVPGIRKLAEEDLQITLAL 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA ++++R  L+P+ ++Y L  ++DACR+Y   +   R+TFEY +++G+ND+  +A  
Sbjct: 215 SLHAPNDEVRRTLMPVAKRYGLNEVMDACRYYFEKTGR-RLTFEYSLVQGVNDNLDEAKA 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L++++K     +NLIP NP    EY+ S ++ I  F   +++SG +  +R   G DI  A
Sbjct: 274 LVRLIKDQHGHVNLIPVNPIKEREYVQSGRQAIEAFKNQLEKSGINVTVRREMGRDIDGA 333

Query: 362 CGQLKSLSKRIPKVP 376
           CGQL+       +  
Sbjct: 334 CGQLRKSFIDKERKE 348


>gi|15924208|ref|NP_371742.1| radical SAM family protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926801|ref|NP_374334.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus N315]
 gi|49483381|ref|YP_040605.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|57651787|ref|YP_186093.1| hypothetical protein SACOL1230 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160347|ref|YP_493808.1| hypothetical protein SAUSA300_1111 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194924|ref|YP_499724.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|148267709|ref|YP_001246652.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150393767|ref|YP_001316442.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151221340|ref|YP_001332162.1| hypothetical protein NWMN_1128 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979539|ref|YP_001441798.1| hypothetical protein SAHV_1208 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509390|ref|YP_001575049.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221142008|ref|ZP_03566501.1| hypothetical protein SauraJ_10305 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253315576|ref|ZP_04838789.1| hypothetical protein SauraC_05407 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731835|ref|ZP_04866000.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733544|ref|ZP_04867709.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006005|ref|ZP_05144606.2| hypothetical protein SauraM_06030 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257425271|ref|ZP_05601696.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427931|ref|ZP_05604329.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430564|ref|ZP_05606946.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433325|ref|ZP_05609683.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257436167|ref|ZP_05612214.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           M876]
 gi|257795726|ref|ZP_05644705.1| cfr family radical SAM enzyme [Staphylococcus aureus A9781]
 gi|258415950|ref|ZP_05682220.1| ribosomal large subunit methyltransferase N [Staphylococcus aureus
           A9763]
 gi|258419697|ref|ZP_05682664.1| cfr family radical SAM enzyme [Staphylococcus aureus A9719]
 gi|258423739|ref|ZP_05686625.1| cfr family radical SAM enzyme [Staphylococcus aureus A9635]
 gi|258438739|ref|ZP_05689892.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A9299]
 gi|258444555|ref|ZP_05692884.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A8115]
 gi|258447612|ref|ZP_05695756.1| cfr family radical SAM enzyme [Staphylococcus aureus A6300]
 gi|258449454|ref|ZP_05697557.1| cfr family radical SAM enzyme [Staphylococcus aureus A6224]
 gi|258452515|ref|ZP_05700521.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A5948]
 gi|258454833|ref|ZP_05702797.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A5937]
 gi|262051850|ref|ZP_06024066.1| hypothetical protein SA930_1400 [Staphylococcus aureus 930918-3]
 gi|269202833|ref|YP_003282102.1| hypothetical protein SAAV_1190 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892704|ref|ZP_06300939.1| cfr family radical SAM enzyme [Staphylococcus aureus A8117]
 gi|282903771|ref|ZP_06311659.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905535|ref|ZP_06313390.1| radical SAM enzyme Cfr family protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908511|ref|ZP_06316341.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282910790|ref|ZP_06318593.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913993|ref|ZP_06321780.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           M899]
 gi|282916467|ref|ZP_06324229.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           D139]
 gi|282918915|ref|ZP_06326650.1| radical SAM enzyme, Cfr family protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282920000|ref|ZP_06327729.1| cfr family radical SAM enzyme [Staphylococcus aureus A9765]
 gi|282924038|ref|ZP_06331714.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           C101]
 gi|282927558|ref|ZP_06335174.1| cfr family radical SAM enzyme [Staphylococcus aureus A10102]
 gi|283770279|ref|ZP_06343171.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus H19]
 gi|283957959|ref|ZP_06375410.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024142|ref|ZP_06378540.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus 132]
 gi|293501026|ref|ZP_06666877.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509985|ref|ZP_06668693.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           M809]
 gi|293526573|ref|ZP_06671258.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294848211|ref|ZP_06788958.1| cfr family radical SAM enzyme [Staphylococcus aureus A9754]
 gi|295407156|ref|ZP_06816957.1| LOW QUALITY PROTEIN: cfr family radical SAM enzyme [Staphylococcus
           aureus A8819]
 gi|295427703|ref|ZP_06820335.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275239|ref|ZP_06857746.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297245958|ref|ZP_06929817.1| cfr family radical SAM enzyme [Staphylococcus aureus A8796]
 gi|297591338|ref|ZP_06949976.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           MN8]
 gi|304381219|ref|ZP_07363872.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|81651279|sp|Q6GHL7|RLMN_STAAR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81694662|sp|Q5HGL4|RLMN_STAAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81705804|sp|Q7A600|RLMN_STAAN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81781713|sp|Q99UQ0|RLMN_STAAM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123098046|sp|Q2FZ66|RLMN_STAA8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123763308|sp|Q2FHM0|RLMN_STAA3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829891|sp|A7X1H8|RLMN_STAA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829892|sp|A6U137|RLMN_STAA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829893|sp|A5ISA3|RLMN_STAA9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829894|sp|A6QGB8|RLMN_STAAE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829895|sp|A8Z3Q4|RLMN_STAAT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|13701018|dbj|BAB42313.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246988|dbj|BAB57380.1| similar to Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|49241510|emb|CAG40196.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57285973|gb|AAW38067.1| conserved hypothetical protein TIGR00048 [Staphylococcus aureus
           subsp. aureus COL]
 gi|87126321|gb|ABD20835.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202482|gb|ABD30292.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740778|gb|ABQ49076.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946219|gb|ABR52155.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374140|dbj|BAF67400.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721674|dbj|BAF78091.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160368199|gb|ABX29170.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253724434|gb|EES93163.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728598|gb|EES97327.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271728|gb|EEV03866.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274772|gb|EEV06259.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278692|gb|EEV09311.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281418|gb|EEV11555.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284449|gb|EEV14569.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           M876]
 gi|257789698|gb|EEV28038.1| cfr family radical SAM enzyme [Staphylococcus aureus A9781]
 gi|257839286|gb|EEV63760.1| ribosomal large subunit methyltransferase N [Staphylococcus aureus
           A9763]
 gi|257844282|gb|EEV68664.1| cfr family radical SAM enzyme [Staphylococcus aureus A9719]
 gi|257845971|gb|EEV69999.1| cfr family radical SAM enzyme [Staphylococcus aureus A9635]
 gi|257847998|gb|EEV71991.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A9299]
 gi|257850048|gb|EEV74001.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A8115]
 gi|257853803|gb|EEV76762.1| cfr family radical SAM enzyme [Staphylococcus aureus A6300]
 gi|257857442|gb|EEV80340.1| cfr family radical SAM enzyme [Staphylococcus aureus A6224]
 gi|257859733|gb|EEV82575.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A5948]
 gi|257863216|gb|EEV85980.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus A5937]
 gi|259160251|gb|EEW45279.1| hypothetical protein SA930_1400 [Staphylococcus aureus 930918-3]
 gi|262075123|gb|ACY11096.1| hypothetical protein SAAV_1190 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940710|emb|CBI49091.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282314010|gb|EFB44402.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           C101]
 gi|282316725|gb|EFB47099.1| radical SAM enzyme, Cfr family protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282319907|gb|EFB50255.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           D139]
 gi|282322061|gb|EFB52385.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325395|gb|EFB55704.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327573|gb|EFB57856.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282330827|gb|EFB60341.1| radical SAM enzyme Cfr family protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282590561|gb|EFB95638.1| cfr family radical SAM enzyme [Staphylococcus aureus A10102]
 gi|282594716|gb|EFB99700.1| cfr family radical SAM enzyme [Staphylococcus aureus A9765]
 gi|282595389|gb|EFC00353.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           C160]
 gi|282764701|gb|EFC04826.1| cfr family radical SAM enzyme [Staphylococcus aureus A8117]
 gi|283460426|gb|EFC07516.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus H19]
 gi|283470430|emb|CAQ49641.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790108|gb|EFC28925.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285816900|gb|ADC37387.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus 04-02981]
 gi|290920645|gb|EFD97708.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096031|gb|EFE26292.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466929|gb|EFF09447.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           M809]
 gi|294825011|gb|EFG41433.1| cfr family radical SAM enzyme [Staphylococcus aureus A9754]
 gi|294968009|gb|EFG44037.1| LOW QUALITY PROTEIN: cfr family radical SAM enzyme [Staphylococcus
           aureus A8819]
 gi|295128061|gb|EFG57695.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297177122|gb|EFH36376.1| cfr family radical SAM enzyme [Staphylococcus aureus A8796]
 gi|297576224|gb|EFH94940.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           MN8]
 gi|298694511|gb|ADI97733.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302332822|gb|ADL23015.1| Ribosomal RNA large subunit methyltransferase N, Rlmn
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302751041|gb|ADL65218.1| Ribosomal RNA large subunit methyltransferase N, Rlmn
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340202|gb|EFM06143.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|312438405|gb|ADQ77476.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312829612|emb|CBX34454.1| radical SAM superfamily protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315131009|gb|EFT86993.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315194104|gb|EFU24497.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|315198455|gb|EFU28784.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140967|gb|EFW32814.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144318|gb|EFW36084.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323442309|gb|EGA99939.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus O46]
 gi|329313887|gb|AEB88300.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329724771|gb|EGG61276.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329727514|gb|EGG63970.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329728784|gb|EGG65205.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 364

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R LL
Sbjct: 17  DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F++     V ++ S DGT K+L             IETV +      ++CV++QVGC
Sbjct: 73  KDNFTVTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +                + +   ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    +E I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  +++R+ L+PINR Y +E LI+A ++Y   +N  R+TFEY +  G+ND    A  L 
Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|118444223|ref|YP_878314.1| ribosomal RNA large subunit methyltransferase N [Clostridium novyi
           NT]
 gi|205829738|sp|A0Q112|RLMN_CLONN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118134679|gb|ABK61723.1| radical SAM enzyme, Cfr family [Clostridium novyi NT]
          Length = 343

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 144/367 (39%), Positives = 211/367 (57%), Gaps = 29/367 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++    +EL++ + K        + R  QI++WIY + + +F  MS+IS+  +  L +
Sbjct: 2   KNILNFTLDELKDWMDKN----SESKFRAKQIFQWIYKKAVFNFDDMSNISKSTKEKLKE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  P +V + +S  DGT K+L  +    I     IE+V +  K   ++CVS+Q+GC 
Sbjct: 58  NFYIQIPNVVKKYVSNIDGTEKFLFEYEDGNI-----IESVVMKYKHGNSICVSTQIGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    +VRNLT+ EI+ QVL A+  + D                 +ISN+V+M
Sbjct: 113 MGCKFCASTVDGVVRNLTSGEIIAQVLKAQKEICD-----------------RISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N+DNV K L + +D   L+  +R ITLST G VP I  + ++ + + LAISLH
Sbjct: 156 GSGEPLDNYDNVIKFLKLINDEDALNIGQRHITLSTCGIVPKIKELADQKMQITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N++R  ++PI  KY LE L+DACR+Y   +N  RITFEY ++KG+NDS  +A  LIK
Sbjct: 216 APNNEIRKSMMPIANKYTLEELLDACRYYYRTTNR-RITFEYALVKGVNDSRENAEELIK 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           I KG+   INLIP N      Y  S  KDI  F E + + G  + IR   G DI  ACGQ
Sbjct: 275 ISKGMLCHINLIPVNEIKENNYERSKSKDIEEFKETLIKHGIETTIRREMGSDINGACGQ 334

Query: 365 LKSLSKR 371
           L+    R
Sbjct: 335 LRRNYIR 341


>gi|220931837|ref|YP_002508745.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
 gi|219993147|gb|ACL69750.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
          Length = 349

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/363 (40%), Positives = 215/363 (59%), Gaps = 23/363 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           KE L  + R+EL     K G P      R SQ++ WIY  G+ +F  M+++   +R  L 
Sbjct: 4   KEDLKSLSRKELLMWFEKRGYPS----FRASQLFNWIYRNGVDEFSRMNNLPLVLREELE 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGC 124
           +   +   +IV++  + DGT K+L             IE+V+IP + SR ++C+SSQVGC
Sbjct: 60  EKSYLTKLKIVNKSKAEDGTVKYLWELKD-----GETIESVFIPYEGSRNSVCISSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C FC TG   L+RNLT  EI+ QVL  +            E         ++SN+V 
Sbjct: 115 SLGCKFCATGLTGLIRNLTPGEIVDQVLQIQK-----------EISNDKYGSPRVSNVVF 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N  +V K++ I +DS GL+  KR+IT+STSG VP I  + ++ + ++LAISL
Sbjct: 164 MGMGEPLANMKSVLKAIEIMNDSKGLNIGKRKITVSTSGLVPQIKELADKKLQIVLAISL 223

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           +A +N LR+ L+PINRK+PLE L++A R+Y  ++N  R+TFEYV+LKG NDSP  A  L+
Sbjct: 224 NAPNNALRDKLMPINRKFPLEKLLEAVRYYTEVTNR-RVTFEYVLLKGTNDSPEHAFQLV 282

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L  I   +NLIPFNP    E+    ++ +  F + +  +G  + +R  RG  I AACG
Sbjct: 283 NLLSDIHGHVNLIPFNPVQETEFKRPSKETVNRFKDILINNGVETTVRQERGTRIEAACG 342

Query: 364 QLK 366
           QL+
Sbjct: 343 QLR 345


>gi|319744504|gb|EFV96859.1| cfr family radical SAM enzyme [Streptococcus agalactiae ATCC 13813]
          Length = 374

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 134/380 (35%), Positives = 212/380 (55%), Gaps = 26/380 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G      + R SQIW W+Y + ++ F  M++IS++   LLN
Sbjct: 17  KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 73  ENFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 127

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI  Q++L +    +               G ++S+IV+M
Sbjct: 128 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 175

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV K L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 176 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 235

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INR +PLE L  A  +Y   +N  R+TFEY+ML G+ND+P +A  L  
Sbjct: 236 APNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 294

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 295 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 354

Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
           CGQL+S + +  +   +  Q
Sbjct: 355 CGQLRSNTMKRDRQKAKVGQ 374


>gi|288904758|ref|YP_003429979.1| hypothetical protein GALLO_0545 [Streptococcus gallolyticus UCN34]
 gi|306830757|ref|ZP_07463921.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977679|ref|YP_004287395.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288731483|emb|CBI13037.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
 gi|304427104|gb|EFM30212.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177607|emb|CBZ47651.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 368

 Score =  428 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 213/373 (57%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL E  ++ G      + R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 9   KPSIYGLTRDELIEWAIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAVLN 64

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + + DGT K+L   P   +     IETV + +    ++CV+SQVGC+
Sbjct: 65  ENFCVNPLKQRVVQEASDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTSQVGCN 119

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +G  K  R+LT+ EI  Q+++ +    +                 ++S++V+M
Sbjct: 120 MGCSFCASGLIKKQRDLTSGEITSQIMMVQKYFDE------------RGQDERVSHVVVM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV + L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 168 GIGEPFDNYNNVLRFLRTINDDNGLAIGARHITVSTSGLAHKIRDFAHESLQVNLAVSLH 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ +NR +PLE L  A  +Y   +N  R+TFEY+ML  +ND P +A  L  
Sbjct: 228 APNNELRSQIMRVNRSFPLEKLFAAIEYYVETTNR-RVTFEYIMLNEVNDFPENAQELAD 286

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + INLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYSRSSKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 346

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 347 CGQLRSNTMKRDR 359


>gi|82750822|ref|YP_416563.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus RF122]
 gi|123768547|sp|Q2YXJ8|RLMN_STAAB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|82656353|emb|CAI80771.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 364

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R LL
Sbjct: 17  DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F++     V ++ S DGT K+L             IETV +      ++CV++QVGC
Sbjct: 73  KDNFTVTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +                + +   ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    +E I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMGFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  +++R+ L+PINR Y +E LI+A ++Y   +N  R+TFEY +  G+ND    A  L 
Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|77408383|ref|ZP_00785123.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae COH1]
 gi|77172986|gb|EAO76115.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae COH1]
          Length = 368

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 211/377 (55%), Gaps = 26/377 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G      + R SQIW W+Y + ++ F  M++IS++   LLN
Sbjct: 11  KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 67  ENFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQYYGLSVCVTTQVGCN 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI  Q++L +    +               G ++S+IV+M
Sbjct: 122 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 169

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV K L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 170 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 229

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +PLE L  A  +Y   +N  R+TFEY+ML G+ND+P +A  L  
Sbjct: 230 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 288

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 348

Query: 362 CGQLKSLSKRIPKVPRQ 378
           CGQL+S + +  +   +
Sbjct: 349 CGQLRSNTMKRDRQKAK 365


>gi|25010575|ref|NP_734970.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           agalactiae NEM316]
 gi|77413558|ref|ZP_00789746.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 515]
 gi|81588871|sp|Q8E6Q7|RLMN_STRA3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|23094928|emb|CAD46149.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160387|gb|EAO71510.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 515]
          Length = 368

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 211/377 (55%), Gaps = 26/377 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G      + R SQIW W+Y + ++ F  M++IS++   LLN
Sbjct: 11  KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 67  ENFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQYYGLSVCVTTQVGCN 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI  Q++L +    +               G ++S+IV+M
Sbjct: 122 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 169

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV K L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 170 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 229

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +PLE L  A  +Y   +N  R+TFEY+ML G+ND+P +A  L  
Sbjct: 230 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 288

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 348

Query: 362 CGQLKSLSKRIPKVPRQ 378
           CGQL+S + +  +   +
Sbjct: 349 CGQLRSNTMKRDRQKAK 365


>gi|297208138|ref|ZP_06924569.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|296887381|gb|EFH26283.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           ATCC 51811]
          Length = 364

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 207/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R LL
Sbjct: 17  DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F++     V ++ S DGT K+L             IETV +      ++CV++QVGC
Sbjct: 73  KDNFTVTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +                + +   ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    +E I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  +++R+ L+PINR Y +E LI+A ++Y   +N  R+TFEY +  G+ND    A  L 
Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +GLDI AACG
Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGLDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|171778734|ref|ZP_02919830.1| hypothetical protein STRINF_00682 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282691|gb|EDT48115.1| hypothetical protein STRINF_00682 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 366

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 215/373 (57%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL E +++ G      + R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 9   KPSIYGLTRDELIEWVIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAILN 64

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + + DGT K+L   P   +     IETV + +    ++CV+SQVGC+
Sbjct: 65  ENFCVNPLKQRVVQEASDGTVKYLFELPDSML-----IETVLMRQHYGLSVCVTSQVGCN 119

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +G  K  R+LT+ EI  Q+++ +    +                 ++S++V+M
Sbjct: 120 IGCSFCASGLIKKQRDLTSGEITSQIMMVQKYFDE------------RGQDERVSHVVVM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV + +   ++  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 168 GIGEPFDNYDNVLRFVRTINNDNGLAIGARHITISTSGLAHKIREFAHESLQVNLAVSLH 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ +NR +PLE L  A  +Y   +N  R+TFEY+ML  +NDSP +A  L  
Sbjct: 228 APNNELRSQIMRVNRSFPLEKLFTAIEYYIETTNR-RVTFEYIMLNDVNDSPENAQELAD 286

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + INLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYRRSSKEHVAAFYDVLKKNGVNCVVRQEHGTDIDAA 346

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 347 CGQLRSNTMKRDR 359


>gi|158320465|ref|YP_001512972.1| radical SAM protein [Alkaliphilus oremlandii OhILAs]
 gi|205829712|sp|A8MH89|RLMN_ALKOO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|158140664|gb|ABW18976.1| radical SAM enzyme, Cfr family [Alkaliphilus oremlandii OhILAs]
          Length = 343

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 203/368 (55%), Gaps = 30/368 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  L+ +  +E+EE L  +G      + R  QI++W+  +G++ F  M+++S+ +R  
Sbjct: 1   MEKIDLLSLTLKEIEEILTNMG----EKKFRGKQIFQWV-NKGVKTFDEMTNLSKNLRDQ 55

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L +   I   +I  + IS  DGT K+L       I     IE V +      T C+S+QV
Sbjct: 56  LAERTYITNIKIEKKLISSIDGTIKYLFLLEDCNI-----IEGVVMKYHHGLTACISTQV 110

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C+FC +    LVRNL A E++ Q+L  +   G+                 +ISNI
Sbjct: 111 GCAMGCTFCASTLDGLVRNLRAGEMIDQILTMQEDTGE-----------------RISNI 153

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V+MG GEPL N+D     L I +D  GL+   R ITLSTSG VP I  + + +I + LAI
Sbjct: 154 VLMGSGEPLHNYDETINFLKIINDENGLNIGNRHITLSTSGLVPQIKTLADLKIPINLAI 213

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +++LR   +P+ +KY ++ LID+CR+Y   +   RITFEY ++KG+ND  +DA  
Sbjct: 214 SLHAPNDELRQQTMPVAKKYAIDELIDSCRYYIEKTGR-RITFEYALIKGVNDRDKDARE 272

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LKG+   +NLIP N      Y     + I  F   +K++G  + +R   G DI AA
Sbjct: 273 LGDLLKGMLCHVNLIPVNNVDERGYKKPSIESIHQFQNTLKKAGIETTVRREMGADINAA 332

Query: 362 CGQLKSLS 369
           CGQL+   
Sbjct: 333 CGQLRRKH 340


>gi|254479559|ref|ZP_05092874.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM
           12653]
 gi|214034497|gb|EEB75256.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM
           12653]
          Length = 336

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 142/362 (39%), Positives = 203/362 (56%), Gaps = 30/362 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  EE+EE  + +G      + R  Q++KWIY + + DF  M+DIS+ +R  L +   I 
Sbjct: 1   MTLEEMEEFFVNLG----ESKFRAKQLYKWIYDKRVTDFDLMTDISKNLRAKLKEIAYIS 56

Query: 72  YPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
             +I++ ++S  D T K+L     + I     IE V I  K   T CVS+QVGC++ C F
Sbjct: 57  ELKIIERRVSQIDDTVKYLFLLEDKNI-----IEGVAIKYKFGNTACVSTQVGCNMKCKF 111

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +     VR+L A E++ QV+   S  G                  KISNIV+MG GEP
Sbjct: 112 CASAIGGKVRDLKASEMVDQVMAIDSDYG------------------KISNIVLMGSGEP 153

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSND 249
             N+D V K + I ++  GL   KR IT+ST G VP I +   EE+ V L+ISLHA +N+
Sbjct: 154 FDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHAPNNE 213

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           LRN L+PINR YPLE L+ ACR+Y   +N  RITFEY ++ G+ND    A  L+ +LKG+
Sbjct: 214 LRNELMPINRAYPLEELMKACRYYIEKTNR-RITFEYALIDGVNDKKEHAYQLVDLLKGM 272

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
              +NLIP N      +  S+ + ++ F + I+ +G +  +R   G DI AACGQL+   
Sbjct: 273 LCHVNLIPINYVKEIGFRKSNNEKVMMFKKIIENAGITCTVRRELGSDIEAACGQLRRKY 332

Query: 370 KR 371
            +
Sbjct: 333 LK 334


>gi|293374997|ref|ZP_06621292.1| radical SAM enzyme, Cfr family [Turicibacter sanguinis PC909]
 gi|325843362|ref|ZP_08167945.1| 23S rRNA m2A2503 methyltransferase [Turicibacter sp. HGF1]
 gi|292646407|gb|EFF64422.1| radical SAM enzyme, Cfr family [Turicibacter sanguinis PC909]
 gi|325489391|gb|EGC91764.1| 23S rRNA m2A2503 methyltransferase [Turicibacter sp. HGF1]
          Length = 347

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 203/367 (55%), Gaps = 25/367 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+S+  +  ++ +  L +    Q+  + R +QI+ W++ + +     MS++ ++++ L
Sbjct: 1   MEKKSIYSLDIQDWQNWLQE----QKQPKFRANQIFDWLFKKRVTSIDEMSNLPKDLKGL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           + + F +   +   ++++ DGT K+L       +     IETV +  K   ++CV++QVG
Sbjct: 57  MQESFDVTTLKERKKQVASDGTTKFLFELSDGDL-----IETVLMRHKYGCSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +    L RNL A EI+ QVL  +  L +                 ++S+IV
Sbjct: 112 CRIGCKFCASTLSGLKRNLQAGEIVAQVLRVQQYLDE--------------SQERVSHIV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++N+ K + I +   GL+   R IT+STSG VP I    ++   V  A+S
Sbjct: 158 VMGIGEPFENYENLTKFIEIINSEKGLNIGSRHITVSTSGIVPKIYNFADQHPQVSFAVS 217

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +++LR  L+PINR YPLE L++A ++Y   +N  RITFEY ++K +ND+   A  L
Sbjct: 218 LHAPTDELRTQLMPINRAYPLEKLMEAVKYYIKQTNR-RITFEYGLIKNVNDTVECANQL 276

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++  +   INLIP N  P   +  +  + I  F + +K+ G +  +R   G DI AAC
Sbjct: 277 ADLVGRLNCHINLIPVNYVPERGFDRTPIEHIEKFEQTLKKRGVNVTVRRELGSDIDAAC 336

Query: 363 GQLKSLS 369
           GQL++  
Sbjct: 337 GQLRAKE 343


>gi|121607087|ref|YP_994894.1| radical SAM protein [Verminephrobacter eiseniae EF01-2]
 gi|205829923|sp|A1WE19|RLMN_VEREI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|121551727|gb|ABM55876.1| radical SAM enzyme, Cfr family [Verminephrobacter eiseniae EF01-2]
          Length = 391

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 150/383 (39%), Positives = 213/383 (55%), Gaps = 22/383 (5%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +   +L+   R+ L +   ++G      R R +Q+++WI+ RG  DF  MSD+++ +R  
Sbjct: 1   MSTTNLLEFDRDGLADFCARLG----EKRFRATQLFRWIHQRGASDFDAMSDLARALRDK 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L     +  P ++  + S DG+ KWL       +G    +E V+IPE  RGTLCVSSQ G
Sbjct: 57  LKGCARVQAPPVISGQASADGSVKWLF-----DVGAGNAVEAVFIPEDERGTLCVSSQAG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TG Q   RNL++ EI+ Q+  A   L      ED          R ISN+V
Sbjct: 112 CAVGCRFCSTGHQGFSRNLSSGEIIAQLWFAEHALRRRLKTED----------RVISNLV 161

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N   +  +L +  D  G   S+RR+T+STSG VP I R+  +  V LA+SL
Sbjct: 162 MMGMGEPLQNLAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLARDCPVALAVSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++ LR+ LVP+NRKYP++ L+ AC+ Y   +    ITFEY ML G+ND    A  L+
Sbjct: 222 HAPNDALRDQLVPLNRKYPIDELLQACKRYLAHAPRDFITFEYCMLDGVNDQIGHARQLV 281

Query: 304 KILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +++    I  K NLIPFNP+P    L S    I+ F++ +  +G  + +R  RG DI AA
Sbjct: 282 ELVGRAAIRCKFNLIPFNPFPASGLLRSAHDQILAFAQVLGAAGIVTTVRKTRGDDIAAA 341

Query: 362 CGQLKSLSK-RIPKVPRQEMQIT 383
           CGQL    + R     R   Q T
Sbjct: 342 CGQLAGDVRDRTRVAERMAKQRT 364


>gi|295696043|ref|YP_003589281.1| radical SAM enzyme, Cfr family [Bacillus tusciae DSM 2912]
 gi|295411645|gb|ADG06137.1| radical SAM enzyme, Cfr family [Bacillus tusciae DSM 2912]
          Length = 360

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 201/363 (55%), Gaps = 26/363 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L G+   EL   L + G P      R +Q++ W+Y + +     M+++ + +R++L +
Sbjct: 15  IHLYGLTLAELRTWLEEQGEPG----YRAAQLFDWMYKKRVTSVDAMTNLPKALRNVLRE 70

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              +   E +  ++S  DGT K+L R           +ETV +      ++CVSSQVGC 
Sbjct: 71  RARLGTMEELTRQVSKKDGTTKFLFRLFD-----GATVETVLMRHSYGHSVCVSSQVGCH 125

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    LVRNL A E++ QVL  + +L                 G+++S++V+M
Sbjct: 126 MGCQFCASTLGGLVRNLEAGEMVEQVLACQRMLDQ--------------QGQRVSSVVVM 171

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N+    + + + +   GL   +R IT+STSG VP I ++ EE + + LA+SLH
Sbjct: 172 GSGEPLENYGATLRFIRLITADEGLRIGQRHITVSTSGMVPAIRKLAEERLQITLAVSLH 231

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++++R+ L+PINR YP+ +L++ACR Y   +   R+TFEY ++ GIND    A  L  
Sbjct: 232 ASNDEVRSRLMPINRAYPIAVLLEACREYWEKTGR-RLTFEYALIGGINDRLDQADELAD 290

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            L+G+P  +NLIP N  P   +  + ++ +  F E ++R G S  +R   G DI AACGQ
Sbjct: 291 RLRGLPCHVNLIPVNYVPERRFDRTPRRQVEAFRERLERHGISCTVRREMGADIAAACGQ 350

Query: 365 LKS 367
           L++
Sbjct: 351 LRA 353


>gi|262048118|ref|ZP_06021005.1| hypothetical protein SAD30_1894 [Staphylococcus aureus D30]
 gi|259163684|gb|EEW48239.1| hypothetical protein SAD30_1894 [Staphylococcus aureus D30]
          Length = 364

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 205/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R LL
Sbjct: 17  DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F++     V ++ S DGT K+L             IETV +      ++CV++QVGC
Sbjct: 73  KDNFTVTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +                + +   ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    +E I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  +++R+ L+PINR Y +E LI+A ++Y   +N  R+TFEY +  G+ND    A  L 
Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL+   +++ 
Sbjct: 353 QLRVKERQVE 362


>gi|126649673|ref|ZP_01721909.1| Radical SAM family enzyme [Bacillus sp. B14905]
 gi|126593392|gb|EAZ87337.1| Radical SAM family enzyme [Bacillus sp. B14905]
          Length = 380

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 204/366 (55%), Gaps = 25/366 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           KES+      +LEE L + G        R +QI+ W+Y + ++ F+ MS++S+ +R  L 
Sbjct: 34  KESIYSFQPHQLEEWLKENG----EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGLRDKLA 89

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F++     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC 
Sbjct: 90  ANFALSTLSTIIKQESKDGTIKFLFQLQD-----GYSIETVLMRHEYGNSVCVTTQVGCR 144

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L R+L A EI+ QV+  +  L +              V  ++S+IV+M
Sbjct: 145 IGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTLDE--------------VSERVSHIVIM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+D +   L + +   GL+   R IT+STSG VP I +  +E + +  A+SLH
Sbjct: 191 GIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFADEQLQINFAVSLH 250

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A + + R  L+PI R Y LE L++A R+Y   +   R++FEY ++ G NDS   A  L  
Sbjct: 251 APNQEARQKLMPIARAYKLEELMEAVRYYTKKTGR-RVSFEYGLMSGENDSVEIAEELSA 309

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KGI   +NLIP N  P  +Y+ + +  I  F + +K++G +  IR  +G DI AACGQ
Sbjct: 310 LIKGIKCHVNLIPVNYVPERDYVRTSRSQIFAFEKTLKKNGINVTIRREQGSDIAAACGQ 369

Query: 365 LKSLSK 370
           L++  +
Sbjct: 370 LRAQER 375


>gi|291549489|emb|CBL25751.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus torques L2-14]
          Length = 346

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 202/365 (55%), Gaps = 29/365 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +     EEL++ +  IG        R  QI++W++V+ +  F  M+++S+ +R  L 
Sbjct: 2   KKDIRAYGYEELQKEMATIG----EKAFRAKQIYEWLHVKLVDHFDEMTNLSKALREKLE 57

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +++ I+   +++ +IS  DGT K+L R     +     +E+V +  K   ++C+SSQVGC
Sbjct: 58  ENYEILPVVMLERQISQIDGTNKFLFRLYDGNV-----VESVLMKYKHGNSVCISSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    LVRNL+  E+L Q+   + + G+                 ++SN+V+
Sbjct: 113 RMGCAFCASTIGGLVRNLSPSEMLGQIYQIQKISGE-----------------RVSNVVI 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
           MG GEP+ N+DN  K + + +D  GL+ S+R +T+ST G VP +  +  E + + LA+SL
Sbjct: 156 MGTGEPMDNYDNFLKFIHLLTDEHGLNISQRNVTVSTCGIVPKMKELAKEHLQITLALSL 215

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H  + + R  L+P+  KY +  ++ AC  Y   +   R++FEY ++ G+ND+  DA  LI
Sbjct: 216 HGSNQEKRRKLMPVANKYDITEVLAACDEYFKETGR-RVSFEYSLVHGVNDTDEDAQELI 274

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L+     INLIP NP    +++   +K  + F   +++SG +  IR   G DI  ACG
Sbjct: 275 HLLRHKNCHINLIPVNPVKERDFVRPSRKSALNFKNKLEKSGINVTIRREMGSDIDGACG 334

Query: 364 QLKSL 368
           QL+  
Sbjct: 335 QLRRR 339


>gi|21282830|ref|NP_645918.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49486057|ref|YP_043278.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|300912218|ref|ZP_07129661.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|81649432|sp|Q6G9Z5|RLMN_STAAS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81762575|sp|Q8NX16|RLMN_STAAW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|21204269|dbj|BAB94966.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244500|emb|CAG42929.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|300886464|gb|EFK81666.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 364

 Score =  426 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K+S+  +  +E++  L++ G      + R  QI++W+Y + +     M+++S+++R LL
Sbjct: 17  DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F++     V ++ S DGT K+L             IETV +      ++CV++QVGC
Sbjct: 73  KDNFTVTTLTTVVKQESKDGTIKFLYELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QVL  +                + +   ++S IV+
Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEP  N+D +   L I +D   L+   R IT+STSG +P I    +E I +  A+SL
Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  +++R+ L+PINR Y +E LI+A ++Y   +N  R+TFEY +  G+ND    A  L 
Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AACG
Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACG 352

Query: 364 QLKSLSKRIP 373
           QL++  +++ 
Sbjct: 353 QLRAKERQVE 362


>gi|222153431|ref|YP_002562608.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           uberis 0140J]
 gi|254807218|sp|B9DUW7|RLMN_STRU0 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|222114244|emb|CAR42840.1| radical SAM superfamily protein [Streptococcus uberis 0140J]
          Length = 361

 Score =  426 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 207/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    L+ G      + R +QIW W+Y + ++ F+ M++IS++   LLN
Sbjct: 2   KPSIYSLTRDELIAWALENG----QKKFRATQIWDWLYKKRVQSFEEMTNISKDFIALLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  EHFCVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI  Q++L +    +                 ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQDERVSHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVMKFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +PLE L  A  +Y   +N  R+TFEY+ML  +ND    A  L  
Sbjct: 221 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAQELAD 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 280 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKKDR 352


>gi|325568408|ref|ZP_08144775.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC
           12755]
 gi|325158177|gb|EGC70330.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC
           12755]
          Length = 361

 Score =  426 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 129/382 (33%), Positives = 213/382 (55%), Gaps = 28/382 (7%)

Query: 1   MNFLKKES--LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
           M   KK +  + G+ + +L   + +    Q   + R +Q+W+W+Y + +  F+ M+++ +
Sbjct: 1   MKRGKKVNPSIYGLTKSDLSLWITE----QNEKKFRANQVWEWLYEKRVTSFEEMTNLPK 56

Query: 59  EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
            +   L+  F I   + +  + + DGT K+L + P   +     IETV + ++   ++CV
Sbjct: 57  PLIEKLSAAFVINPLKQMVVQEASDGTVKYLFQLPDNHM-----IETVLMRQEYGMSVCV 111

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           ++QVGC++ C+FC +G  K  R+LTA EI+ Q++L +    +             + G +
Sbjct: 112 TTQVGCNIGCTFCASGLLKKQRDLTAGEIVAQIMLVQHYFDE------------RNEGER 159

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           +S++V+MG+GEP  N+DNV   L I +D  GL+   R IT+STSG    I    E  + V
Sbjct: 160 VSHVVVMGIGEPFDNYDNVMHFLQIINDPKGLAIGARHITVSTSGLAHKIKEFAENGLQV 219

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LAISLHA +N++R  ++ INR +P+E L+ A  +Y   +N  RITFEY+ML  +ND P 
Sbjct: 220 NLAISLHAPNNEVRTSMMRINRSFPIEKLMAAVDYYLEKTNR-RITFEYIMLDHVNDRPE 278

Query: 298 DALNLIKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            A  L  +LK     + +NLIP+NP    + Y  S + D++ F + +K++G +  IR   
Sbjct: 279 HARQLAALLKDKKKLSYVNLIPYNPVSEHDQYARSKKADVLAFYDILKKNGINCVIRKEH 338

Query: 355 GLDILAACGQLKSLSKRIPKVP 376
           G DI AACGQL+S   +     
Sbjct: 339 GTDIDAACGQLRSKQMKKEASA 360


>gi|146283364|ref|YP_001173517.1| radical SAM protein [Pseudomonas stutzeri A1501]
 gi|145571569|gb|ABP80675.1| radical SAM enzyme, Cfr family [Pseudomonas stutzeri A1501]
          Length = 347

 Score =  426 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/341 (46%), Positives = 205/341 (60%), Gaps = 17/341 (4%)

Query: 39  WKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG 98
            KWI+  G+ DF  MS++ + +R  L     I  PEIV E IS DGTRKW++R     + 
Sbjct: 1   MKWIHHFGVDDFDAMSNLGKALREKLKACAEIRGPEIVSEDISSDGTRKWVVR-----VA 55

Query: 99  GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
               +ETVYIP+  RGTLCVSSQ GC+L CSFC TG Q    NLTA E++ QV +A    
Sbjct: 56  SGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSF 115

Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
           G  P   D          R I+N+VMMGMGEPL NFDNV  ++ I  D +G   SKR++T
Sbjct: 116 GTVPAKID----------RAITNVVMMGMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVT 165

Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           LSTSG VP I  + + I V LA+SLHA +  LR+ LVPIN+KYPL++L+ AC+ Y     
Sbjct: 166 LSTSGVVPMIDELAKVIDVSLALSLHAPNEALRDQLVPINKKYPLDVLLAACKRYVSRLG 225

Query: 279 ARRI-TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
            +R+ T EY +LKG+ND P  A  +I +L  IP KINLIPFNP+P   Y       I  F
Sbjct: 226 EKRVLTIEYTLLKGVNDQPEHAEQMIALLADIPCKINLIPFNPFPHSGYERPSNNAIRRF 285

Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPR 377
            + + + G++  +RT RG DI AACGQL      R  +  R
Sbjct: 286 QDILHKGGHNVTVRTTRGEDIDAACGQLVGQVLDRTRRSER 326


>gi|51892489|ref|YP_075180.1| hypothetical protein STH1351 [Symbiobacterium thermophilum IAM
           14863]
 gi|81610561|sp|Q67PQ7|RLMN_SYMTH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|51856178|dbj|BAD40336.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 371

 Score =  426 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 211/369 (57%), Gaps = 28/369 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           ++ L GM  EE+ + +  +G P    R R  Q+++W+Y +G++DF  M+++   +R  L 
Sbjct: 23  RQPLPGMSLEEMADLMADLGEP----RFRAKQLFQWVYQKGVKDFDAMTNLPARLRQHLA 78

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
               +   E   E+     GT K+L R          ++E+V + +    ++CV++QVGC
Sbjct: 79  GTTMLRLLEKETEQHDRRTGTTKYLFRL-----ADGSQVESVLMRQSWGNSVCVTTQVGC 133

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    LVRNLTA EI+ Q+++ +  L                 G +IS +V+
Sbjct: 134 RMGCTFCASTVGGLVRNLTAGEIVDQIVMMQRELPQ---------------GERISTVVL 178

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG GEPL N+D+V K++ +  D  GL+   R IT+STSG VP + R+ EE + + LA+SL
Sbjct: 179 MGSGEPLENYDHVLKAVRLVHDPEGLNIGYRHITISTSGIVPGMRRLAEEGLPITLALSL 238

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR  L+P+ R +PL  ++ A R Y   +   R+T+EY++++G+ND P +A  L 
Sbjct: 239 HAPTDELRRQLMPVARIWPLAEVLAAAREYGEKTGR-RVTYEYILIEGVNDGPEEARQLA 297

Query: 304 KILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           ++LKG  A +NLIP NP      Y     + +  F E ++ +G ++ +R   G +I AAC
Sbjct: 298 RLLKGALAHVNLIPMNPVAERPQYRRPGPERVNRFKEILESNGIATTVRREMGGEIDAAC 357

Query: 363 GQLKSLSKR 371
           GQL++ ++R
Sbjct: 358 GQLRNRAQR 366


>gi|168186788|ref|ZP_02621423.1| radical SAM enzyme, Cfr family [Clostridium botulinum C str.
           Eklund]
 gi|169295142|gb|EDS77275.1| radical SAM enzyme, Cfr family [Clostridium botulinum C str.
           Eklund]
          Length = 343

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 139/367 (37%), Positives = 207/367 (56%), Gaps = 29/367 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++    +EL++ +   G      + R  QI++WIY + + +F  M++IS+  +  L +
Sbjct: 2   KNILDFTLDELKDWMDTNG----ESKFRAKQIFQWIYKKAVFNFDDMTNISKGTKEKLKE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  P ++ +  S  DGT K+L  +    I     IE+V +  K   ++CVS+Q+GC 
Sbjct: 58  NFCIQIPNVIKKYKSNIDGTEKFLFEYEDGNI-----IESVVMKYKHGNSICVSTQIGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    +VRNLT+ EI+ QVL A+  + D                 +ISN+V+M
Sbjct: 113 MGCKFCASTVDGVVRNLTSGEIIAQVLKAQKEIDD-----------------RISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N+DNV K L + +    L   +R ITLST G VP I  + +E + + LAISLH
Sbjct: 156 GSGEPLDNYDNVLKFLKLINHDDTLKIGQRHITLSTCGVVPKIKELADEKMQITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N++R  ++PI  KY L+ L++ CR+Y   +N  RITFEY ++KG+NDS  +A  LIK
Sbjct: 216 APNNEIRKSMMPIASKYTLDELLETCRYYYITTNR-RITFEYALVKGVNDSRENAEELIK 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            LKG+   INLIP N      Y  S  KDI  F E + + G  + IR   G DI  ACGQ
Sbjct: 275 KLKGMLCHINLIPVNEIKENNYERSKSKDIEEFKETLIKYGIETTIRREMGSDINGACGQ 334

Query: 365 LKSLSKR 371
           L+    R
Sbjct: 335 LRRNYIR 341


>gi|257867066|ref|ZP_05646719.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           casseliflavus EC30]
 gi|257873401|ref|ZP_05653054.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           casseliflavus EC10]
 gi|257877144|ref|ZP_05656797.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           casseliflavus EC20]
 gi|257801122|gb|EEV30052.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           casseliflavus EC30]
 gi|257807565|gb|EEV36387.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           casseliflavus EC10]
 gi|257811310|gb|EEV40130.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           casseliflavus EC20]
          Length = 361

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 129/382 (33%), Positives = 213/382 (55%), Gaps = 28/382 (7%)

Query: 1   MNFLKKES--LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
           M   KK +  + G+ + +L   + +    Q   + R +Q+W+W+Y + +  F+ M+++ +
Sbjct: 1   MKRGKKVNPSIYGLTKSDLSLWITE----QNEKKFRANQVWEWLYEKRVTSFEEMTNLPK 56

Query: 59  EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
            +   L+  F I   + +  + + DGT K+L + P   +     IETV + ++   ++CV
Sbjct: 57  PLIEKLSAAFVINPLKQMVVQEASDGTVKYLFQLPDNHM-----IETVLMRQEYGMSVCV 111

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           ++QVGC++ C+FC +G  K  R+LTA EI+ Q++L +    +             + G +
Sbjct: 112 TTQVGCNIGCTFCASGLLKKQRDLTAGEIVAQIMLVQHYFDE------------RNEGER 159

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           +S++V+MG+GEP  N+DNV   L I +D  GL+   R IT+STSG    I    E  + V
Sbjct: 160 VSHVVVMGIGEPFDNYDNVMHFLQIINDPKGLAIGARHITVSTSGLAHKIREFAENGLQV 219

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LAISLHA +N++R  ++ INR +P+E L+ A  +Y   +N  RITFEY+ML  +ND P 
Sbjct: 220 NLAISLHAPNNEVRTSMMRINRSFPIEKLMAAVDYYLEKTNR-RITFEYIMLDHVNDRPE 278

Query: 298 DALNLIKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            A  L  +LK     + +NLIP+NP    + Y  S + D++ F + +K++G +  IR   
Sbjct: 279 HARQLAALLKDKKKLSYVNLIPYNPVSEHDQYARSKKADVLAFYDILKKNGINCVIRKEH 338

Query: 355 GLDILAACGQLKSLSKRIPKVP 376
           G DI AACGQL+S   +     
Sbjct: 339 GTDIDAACGQLRSKQMKKEASA 360


>gi|125973091|ref|YP_001037001.1| radical SAM protein [Clostridium thermocellum ATCC 27405]
 gi|256004594|ref|ZP_05429572.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360]
 gi|281417286|ref|ZP_06248306.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20]
 gi|205829739|sp|A3DCX9|RLMN_CLOTH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|125713316|gb|ABN51808.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium thermocellum
           ATCC 27405]
 gi|255991466|gb|EEU01570.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360]
 gi|281408688|gb|EFB38946.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20]
 gi|316940688|gb|ADU74722.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 1313]
          Length = 349

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 131/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+ M  EELE  + ++G      + R  QI++W   +GI+D   M+++S+++R  L 
Sbjct: 4   KADLLSMTIEELENLMAEMG----EQKFRAKQIFQWT-NKGIKDIDAMTNLSKDLREKLK 58

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +   I   E++ + +S  DGT K+L +     I     IE+V +      + C+SSQVGC
Sbjct: 59  ERAYINRLEVIKKFVSKIDGTIKYLFKLNDGNI-----IESVLMQYLHGYSACISSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +     VRNLT  E+L Q+L  ++                     +I N+V+
Sbjct: 114 KMGCKFCASTGVGFVRNLTPGEMLDQILTIQN-----------------DTKNRIGNVVI 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEPL N++NV K L + +   G++   R I++ST G VP I R+ EE I V L+ISL
Sbjct: 157 MGIGEPLDNYENVVKFLRLVNHKDGINLGARHISVSTCGLVPEILRLAEEKIPVTLSISL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++++R  ++PIN++Y ++ +I+AC+ Y   +N  RITFEY M+ G+NDS  +AL L 
Sbjct: 217 HAPNDEIREKIMPINKRYSIDKIIEACKIYTETTNR-RITFEYAMIDGLNDSKENALELA 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K ++G+   +NLIP N      +  S ++ I  F E ++R G  + +R   G DI AACG
Sbjct: 276 KRIRGMLCHVNLIPVNTVSDTGFKRSSREKITAFKEILERFGVETTVRRELGSDINAACG 335

Query: 364 QLK 366
           QL+
Sbjct: 336 QLR 338


>gi|210617186|ref|ZP_03291453.1| hypothetical protein CLONEX_03675 [Clostridium nexile DSM 1787]
 gi|210149461|gb|EEA80470.1| hypothetical protein CLONEX_03675 [Clostridium nexile DSM 1787]
          Length = 345

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 202/367 (55%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+ +     EEL++ +  +G        R  Q+++W++V+    F+ M+++S+ +R  
Sbjct: 1   MEKKDIRSYTFEELKQEMEHLG----EKSFRAKQVYEWLHVKLADSFEEMTNLSKALREK 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L+  + I   ++++ + S  DGT K+L      C+     +E+V +  K   ++C+SSQV
Sbjct: 57  LDAAYEIAPVKMLERQESKLDGTNKFLF-----CLQDGHVVESVLMKYKHGNSVCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L RNL A E+L Q+   + + G+                 ++SN+
Sbjct: 112 GCRMGCKFCASTIGGLERNLKASEMLGQIYQIQKISGE-----------------RVSNV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEP+ N+DN  K + I +D  GL  S+R IT+ST G VPN+ R+ EE + + LA+
Sbjct: 155 VVMGTGEPMDNYDNFLKFIHILTDEHGLHISQRNITVSTCGIVPNMKRLAEEKLQITLAL 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH  + + R +L+P+  KY L  ++ AC +Y   +   R+TFEY ++ G+ND   DA  
Sbjct: 215 SLHGSTQEKRKVLMPVANKYELSEVLAACDYYFEKTGR-RVTFEYSLVHGVNDKEEDAAE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           LI ILK     +NLIP NP     +    +K+ + F   +++SG +  IR   G DI  A
Sbjct: 274 LIHILKHRNCHLNLIPVNPIKERTFEKPSKKNAMNFKNKLEKSGINVTIRREMGSDIDGA 333

Query: 362 CGQLKSL 368
           CGQL+  
Sbjct: 334 CGQLRRR 340


>gi|169827065|ref|YP_001697223.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
           sphaericus C3-41]
 gi|205829785|sp|B1HQE6|RLMN_LYSSC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|168991553|gb|ACA39093.1| UPF0063 protein [Lysinibacillus sphaericus C3-41]
          Length = 380

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 204/366 (55%), Gaps = 25/366 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           KES+      +LE+ L + G        R +QI+ W+Y + ++ F+ MS++S+ +R  L 
Sbjct: 34  KESIYSFQPHQLEDWLKENG----EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGLRDKLA 89

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F++     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC 
Sbjct: 90  ANFALSTLSTIIKQESKDGTIKFLFQLQD-----GYSIETVLMRHEYGNSVCVTTQVGCR 144

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L R+L A EI+ QV+  +  L +              V  ++S+IV+M
Sbjct: 145 IGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTLDE--------------VNERVSHIVIM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+D +   L + +   GL+   R IT+STSG VP I +  +E + +  A+SLH
Sbjct: 191 GIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFADEQLQINFAVSLH 250

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A + + R  L+PI R Y L+ L++A R+Y   +   R++FEY ++ G NDS   A  L  
Sbjct: 251 APNQEARQKLMPIARAYKLDELMEAVRYYTKKTGR-RVSFEYGLMSGENDSVEIAEELSA 309

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KGI   +NLIP N  P  +Y+ + +  I  F + +K++G +  IR  +G DI AACGQ
Sbjct: 310 LIKGIKCHVNLIPVNYVPERDYVRTSRSQIFAFEKTLKKNGINVTIRREQGSDIAAACGQ 369

Query: 365 LKSLSK 370
           L++  +
Sbjct: 370 LRAQER 375


>gi|171463401|ref|YP_001797514.1| radical SAM enzyme, Cfr family [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192939|gb|ACB43900.1| radical SAM enzyme, Cfr family [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 383

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 145/355 (40%), Positives = 206/355 (58%), Gaps = 9/355 (2%)

Query: 30  HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWL 89
               R  Q+ +WI+ RG+ D   MSD+++  R  L     ++   ++ ++ + DGTRKWL
Sbjct: 10  EKPFRAKQLMQWIHQRGVSDINHMSDLAKSFRATLLDKTEVLSLPVIKDEHALDGTRKWL 69

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
           L      +G    +E+V+IPE  RGTLC+SSQ GC++ C FC TG Q   RNLT+ EI+ 
Sbjct: 70  L-----DVGAGNAVESVFIPEDDRGTLCISSQAGCAVNCRFCSTGHQGFARNLTSGEIIG 124

Query: 150 QVLLARSLLGDFPGC----EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           Q+  A  LL + P      E          GR ISN+VMMGMGEPL N+DNV  +L +  
Sbjct: 125 QLWFAEHLLRNDPEAVCRIEKFLTPGWEHTGRVISNVVMMGMGEPLLNYDNVVSALRLML 184

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
           D      S+RR+T+STSG VP I R+ ++  V LA+SLHA ++ LR+ LVP+N+KY L  
Sbjct: 185 DDRAYGLSRRRVTVSTSGVVPMIDRLAQDCPVALAVSLHAPNDALRDQLVPLNQKYLLRE 244

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           L+DAC  Y   +    +TFEY ML  +NDS   A  L+++L+ I  KINLIPFNP+P   
Sbjct: 245 LLDACERYLPFAPRDFLTFEYCMLDSVNDSDIQAKELVRLLRNIKCKINLIPFNPFPESG 304

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEM 380
              S  + +  F+  +  +G  + +R  RG DI AACGQL        +V  +++
Sbjct: 305 LKRSPAQRVNAFAGILLDAGMVATVRKTRGDDIAAACGQLAGDVVDRTRVRERDV 359


>gi|258511306|ref|YP_003184740.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478032|gb|ACV58351.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 348

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 209/365 (57%), Gaps = 27/365 (7%)

Query: 7   ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
             L     EEL + ++ ++G        R  Q+++W+Y +  + F  M+++ + +R  LN
Sbjct: 2   VHLYDFTLEELRDWVVRELG----ERPFRAVQLYEWMYQKRAKSFDEMTNLPKALRQRLN 57

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +   +   + V  + S  D T K+LL +P       V +E+V +      ++CVSSQVGC
Sbjct: 58  EMAYLRSAKQVVRQDSKVDPTTKFLLAWPD-----GVTVESVLMRHGYGNSVCVSSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    ++R++TA E++ QV+ ++SLL +              VG+++S++V+
Sbjct: 113 KMGCTFCASTLGGMIRHMTAGEMVEQVMHSQSLLDE--------------VGQRVSSVVV 158

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MG GEP+ N+D V + + I ++  GL+  +R IT+ST G VP I R+ EE   + LA+SL
Sbjct: 159 MGSGEPMDNYDQVMRFIDIITNEHGLNIGQRHITVSTVGLVPGIRRLAEEGRQITLAVSL 218

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++ +R  ++P+N+ YP+  L++AC  Y   +   RI+FEY ++ G NDS   A  L 
Sbjct: 219 HAPNDAIRGRMMPVNKAYPIAKLMEACHDYYRKTGR-RISFEYALVAGENDSLECAKELA 277

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++KG+P  +NLIP N  P   Y  +D+K I  F   +  +G ++ IR   G DI AACG
Sbjct: 278 ELVKGLPCHVNLIPVNYVPERGYRRTDRKQIFAFWRALLDAGVNATIRREMGHDIAAACG 337

Query: 364 QLKSL 368
           QL++ 
Sbjct: 338 QLRAQ 342


>gi|307264804|ref|ZP_07546366.1| radical SAM enzyme, Cfr family [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920062|gb|EFN50274.1| radical SAM enzyme, Cfr family [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 342

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 201/368 (54%), Gaps = 30/368 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  M  EE+EE  + IG      R R  QI+KWIY + I DF  M+DIS+ +R  L + 
Sbjct: 3   NLKDMTLEEMEEFFVNIG----ESRYRAKQIYKWIYDKKITDFDEMTDISKNLRSKLKEI 58

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   +I   ++S  D T K+L       I     IE V I  +   T CVS+QVGC++
Sbjct: 59  AYISQLKIEARRVSEVDDTVKYLFLLEDNNI-----IEGVAIKYRFGNTACVSTQVGCNM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +     VR+L A E++ QV+      G                  KISNIV+MG
Sbjct: 114 RCSFCASAIGGKVRDLKASEMIDQVIAIDGDYG------------------KISNIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+D V K + I ++  GL    R IT+ST G VP I +  +E + V L+ISLHA
Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPQGLGIGGRHITISTCGIVPKIYQFADEKLQVNLSISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  L+PIN+ YPLE L+ AC++Y   +  RRITFEY +++G+ND    A  L+ +
Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYVEKT-RRRITFEYSLIEGVNDKKEHAYQLVDL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N      +  ++ + ++ F + I+ +G S  +R   G DI AACGQL
Sbjct: 275 LKGMLCHVNLIPINYVKEIGFKKANNEKVMMFKKIIEDAGISCTVRRELGSDIEAACGQL 334

Query: 366 KSLSKRIP 373
           +    +  
Sbjct: 335 RRKYLKER 342


>gi|312910636|ref|ZP_07769477.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 516]
 gi|311289012|gb|EFQ67568.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 516]
          Length = 360

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 129/368 (35%), Positives = 213/368 (57%), Gaps = 26/368 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KES+ G+ RE+L +  L  G      + R +Q+W+W+Y + +  F  MS+IS+ +  L
Sbjct: 1   MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FS+   + V  + + DGT K+L   P + +     IETV + ++   ++CV++QVG
Sbjct: 57  LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +    +              +  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+ NV   L   +D  GL+   R IT+STSG VP I    +  + V LAIS
Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR +P+E L+ A   Y   +N  R+TFEY+ML  +ND P  A  L
Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L+     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  IR   G DI 
Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338

Query: 360 AACGQLKS 367
           AA GQ++S
Sbjct: 339 AAFGQIRS 346


>gi|315301572|ref|ZP_07872683.1| radical SAM enzyme, Cfr family [Listeria ivanovii FSL F6-596]
 gi|313630054|gb|EFR98076.1| radical SAM enzyme, Cfr family [Listeria ivanovii FSL F6-596]
          Length = 368

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 137/387 (35%), Positives = 219/387 (56%), Gaps = 27/387 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   
Sbjct: 1   TMEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIE 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LL  +F +   E    + S DGT K+L +     +     IETV + ++   ++CV++QV
Sbjct: 57  LLMANFVMNTLEAQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C+FC +G  K  R+LTA EI+ Q++  +  L D              +  ++S++
Sbjct: 112 GCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDD------------RQLEERVSHV 159

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V+MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LAI
Sbjct: 160 VVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAI 219

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N  RITFEY+MLKG+ND  ++AL 
Sbjct: 220 SLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKTNR-RITFEYIMLKGVNDHKKEALE 278

Query: 302 LIKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L  +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G DI
Sbjct: 279 LAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDI 338

Query: 359 LAACGQLKSLS-KRIPKVPRQEMQITG 384
            AACGQL+S   KR+    R + +   
Sbjct: 339 DAACGQLRSKQIKRVGVRERMKQKQAA 365


>gi|333001958|gb|EGK21524.1| hypothetical protein SFK218_3513 [Shigella flexneri K-218]
          Length = 336

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 149/346 (43%), Positives = 199/346 (57%), Gaps = 19/346 (5%)

Query: 42  IYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV 101
           +Y     +F  M+DI++ +R  L +   I  PE+V+E+ S DGT KW +           
Sbjct: 1   MYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------Q 54

Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
            +ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV  A  ++G  
Sbjct: 55  RVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG-- 112

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
                       +  R I+N+VMMGMGEPL N +NV  ++ I  D  G   SKRR+TLST
Sbjct: 113 --------AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLST 164

Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR- 280
           SG VP + ++G+ I V LAISLHA ++++R+ +VPIN+KY +E  + A R Y   SNA  
Sbjct: 165 SGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQ 224

Query: 281 -RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339
            R+T EYVML  +ND    A  L ++LK  P KINLIP+NP+P   Y  S    I  FS+
Sbjct: 225 GRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPDAPYGRSSNSRIDRFSK 284

Query: 340 CIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
            +   G+++ +R  RG DI AACGQL      R  +  R+ MQ   
Sbjct: 285 VLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEA 330


>gi|220917417|ref|YP_002492721.1| radical SAM enzyme, Cfr family [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955271|gb|ACL65655.1| radical SAM enzyme, Cfr family [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 372

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 148/378 (39%), Positives = 215/378 (56%), Gaps = 19/378 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  + +E L   +  +G        R  Q+++W+++RG    + ++D+ + +R  L +
Sbjct: 9   PDLRSLPQERLAALIAGLG----EKPFRARQVYRWLHLRGAASLEELTDVPRALRERLAE 64

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +   E   E+ S DGT KW  R      G    IE+VY+PE  R TLCVS+QVGC++
Sbjct: 65  GTRLTTLERATEQRSADGTIKWTWRT-----GDGKLIESVYMPETDRKTLCVSTQVGCAV 119

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TGT  L RNLT  EI+ QV  A   L +    E           R ++N+V MG
Sbjct: 120 GCTFCMTGTMGLARNLTPGEIVDQVHRANRRLIELGEGEGP---------RPLTNLVFMG 170

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+ ++K +L +     G +FS R +T+STSG VP + R+GEE  V LA+SL+A 
Sbjct: 171 MGEPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPVMRRLGEETQVKLAVSLNAT 230

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++  R+ ++PINR+YPL  L+ ACR +P +   RRITFEYVML G+ND+P DA  L ++L
Sbjct: 231 TDAQRDAIMPINRRYPLAELLRACREFP-MKQGRRITFEYVMLGGVNDAPEDAERLARLL 289

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +GIPAK+NLIP+N  PG  +       +  F + +     ++ +R  RG DI AACGQL 
Sbjct: 290 RGIPAKVNLIPYNENPGLGFAAPAPSAVERFRDLLVARNVTAVVRKNRGTDIAAACGQLA 349

Query: 367 SLSKRIPKVPRQEMQITG 384
           +         R    +TG
Sbjct: 350 AEGGPGDPRRRAAAPLTG 367


>gi|291547144|emb|CBL20252.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus sp. SR1/5]
          Length = 346

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 123/362 (33%), Positives = 198/362 (54%), Gaps = 30/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             +  M  EEL+E + KIG        R  QI+ W++ + +  +  M+++S+ +R  L+ 
Sbjct: 2   TDVKSMTMEELKEFMTKIG----EKPFRAKQIYAWLHQQLVTSWDEMTNLSKSLREKLSA 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            + I      D +IS  DGTRK+L +     +     IE+V +      ++C+SSQVGC 
Sbjct: 58  -YPITALTQADVRISKIDGTRKYLFQLEDGNV-----IESVLMRYHHGNSVCISSQVGCR 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    L R L   E+L Q+   ++  G+                 +++N+V+M
Sbjct: 112 MGCRFCASTIGGLTRCLKPSEMLDQIYRIQADTGE-----------------RVANVVVM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEP+ N+DN+ + + I +D  GL  S+R +T+ST G VP +  + EE + + LA+SLH
Sbjct: 155 GTGEPMDNYDNLVRFVRILTDENGLGISQRNVTVSTCGIVPKMYDLAEEKLQITLALSLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++ R  L+PI  KY ++ ++DACR+Y   +   RITFEY ++ G+NDS  DA  L  
Sbjct: 215 APNDEKRQELMPIANKYSMDEVLDACRNYFDKTGR-RITFEYSLVAGVNDSEEDARQLAG 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            +KGI   +NLIP NP     Y+ S ++ +  F   +++ G +  IR   G DI  ACGQ
Sbjct: 274 RIKGINCHVNLIPVNPIKERSYVRSTRQAVENFKIKLEKYGINVTIRREMGSDIDGACGQ 333

Query: 365 LK 366
           L+
Sbjct: 334 LR 335


>gi|326389541|ref|ZP_08211108.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994546|gb|EGD52971.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
           200]
          Length = 342

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 139/368 (37%), Positives = 201/368 (54%), Gaps = 30/368 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  M  EE+EE  + IG      R R  QI+KWIY + I DF  M+DIS+ +R  L + 
Sbjct: 3   NLKDMTLEEMEEFFVNIG----ESRYRAKQIYKWIYDKKITDFDEMTDISKNLRSKLKEI 58

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   +I   ++S  D T K+L       I     IE V I  +   T C+S+QVGC++
Sbjct: 59  AYISQLKIEARRVSEVDDTVKYLFLLEDNNI-----IEGVAIKYRFGNTACISTQVGCNM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +     VR+L A E++ QV+      G                  KISNIV+MG
Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQVIAIDGDYG------------------KISNIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+D V K + I ++  GL    R IT+ST G VP I +  +E + V L+ISLHA
Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  L+PIN+ YPLE L+ AC++Y   +  RRITFEY +++G+ND    A  L+ +
Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYVEKT-RRRITFEYSLIEGVNDKKEHAYQLVDL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N      +  ++ + ++ F + I+ +G S  +R   G DI AACGQL
Sbjct: 275 LKGMLCHVNLIPINYVKEIGFKKANNEKVMMFKKIIEDAGISCTVRRELGSDIEAACGQL 334

Query: 366 KSLSKRIP 373
           +    +  
Sbjct: 335 RRKYLKER 342


>gi|323342528|ref|ZP_08082760.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463640|gb|EFY08834.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 347

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 122/369 (33%), Positives = 205/369 (55%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +S+ G    E+ +     G      R R  Q+++W+Y + +  F  MSD+S  +R  L Q
Sbjct: 2   KSIYGYDLNEMGDLFESYG----EKRFRAKQLFQWLYQKRVTSFDDMSDLSISLREKLKQ 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F +   ++V ++++ D T K+LL      +     IETV +      ++CV+SQVGC++
Sbjct: 58  DFELDTLKVVMKQVASDETTKFLLECSDGAL-----IETVMMKHDYGYSVCVTSQVGCAM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +G  K  RNLT+ E++ Q++  +  L +                +++S+IV+MG
Sbjct: 113 GCKFCASGLLKKKRNLTSAEVVNQIMFVQRHLDE--------------QDKRVSHIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEP  N+DN+ + + I +   GL    R IT+STSG  P I +  +E   V LAISLHA
Sbjct: 159 IGEPFDNYDNIMRFIRIVNHDHGLGIGARHITISTSGVAPVIKKFADEQTQVNLAISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LR+ ++P+N+ + LE L DA ++Y   SN  R+TFEY+++  +ND    A  L+ +
Sbjct: 219 PNDTLRSEIMPVNKMFNLEKLFDALKYYQSKSNR-RLTFEYILIDNVNDQIAQAKELVAL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++G+ A +NLIP+N      +  +  +    F + +KR+G    IR  +G +I AACGQL
Sbjct: 278 IRGMNAYVNLIPYNEVDENPFRQTKPEQAAKFYDYLKRNGIQCTIRREKGSEIDAACGQL 337

Query: 366 KSLSKRIPK 374
           ++  ++  K
Sbjct: 338 RANVEKQRK 346


>gi|329117105|ref|ZP_08245822.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parauberis NCFD
           2020]
 gi|326907510|gb|EGE54424.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parauberis NCFD
           2020]
          Length = 361

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 204/375 (54%), Gaps = 26/375 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G      + R +QIW W+Y + +  F+ M++IS++   LLN
Sbjct: 2   KPSIYSLTRDELIAWAIENG----QKKFRATQIWDWLYKKRVDSFEEMTNISKDFIALLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DNFCVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L + EI  Q++L +    +                 ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDE------------RGKDERVSHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV K L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYTNVMKFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INR +PLE L  A  +Y   +N  R+TFEY+ML  +ND    A  L  
Sbjct: 221 APNNDLRSQIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAD 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I     +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 280 LTKNIRKLCYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKTGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPKVP 376
           CGQL+S + +  +  
Sbjct: 340 CGQLRSNTMKKDRQE 354


>gi|295091952|emb|CBK78059.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium cf.
           saccharolyticum K10]
          Length = 376

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 121/367 (32%), Positives = 198/367 (53%), Gaps = 29/367 (7%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             + +  +  M   ELE  L ++G        R  Q+++W++V+    F  M+++S+ +R
Sbjct: 28  RTVSETDIKSMTLPELEAYLKEMG----EKPFRAKQLYQWMHVKLAASFDEMTNLSKGLR 83

Query: 62  HLL-NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             L  Q F      +     + DGTRK+L       +     IE+V +  K   ++C+SS
Sbjct: 84  ETLGRQCFYASLTPVDVRISAVDGTRKYLFELSDGNV-----IESVLMRYKHGNSVCISS 138

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC +    L RNL   E+L Q+   +   G+                 ++S
Sbjct: 139 QVGCRMGCRFCASTLDGLERNLKPSEMLEQIYRIQRDTGE-----------------RVS 181

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           N+V+MG GEP+ N+DN+ + + + +D  GL+ S+R +T+ST G VP I +  EE + V L
Sbjct: 182 NVVVMGSGEPMDNYDNLIRFIHLLTDENGLNISQRNVTVSTCGIVPRIRQFAEEGLQVTL 241

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA ++++R  L+P+ + Y L  ++DAC +Y   +   R+TFEY ++KG+ND+  +A
Sbjct: 242 ALSLHAPNDEVRKTLMPVAKSYALRDVLDACHYYFEKTGR-RLTFEYSLVKGVNDNLEEA 300

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L +++K     +NLIP NP    +Y  SD+K I  F   ++R G +  +R   G DI 
Sbjct: 301 RALAELIKDQHGHVNLIPVNPIKERDYKQSDRKAIEDFKNYLERRGINVTVRREMGRDID 360

Query: 360 AACGQLK 366
            ACGQL+
Sbjct: 361 GACGQLR 367


>gi|283797835|ref|ZP_06346988.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1]
 gi|291074523|gb|EFE11887.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1]
          Length = 376

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 121/367 (32%), Positives = 198/367 (53%), Gaps = 29/367 (7%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             + +  +  M   ELE  L ++G        R  Q+++W++V+    F  M+++S+ +R
Sbjct: 28  RTVSETDIKSMTLPELEAYLKEMG----EKPFRAKQLYQWMHVKLAASFDEMTNLSKGLR 83

Query: 62  HLL-NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             L  Q F      +     + DGTRK+L       +     IE+V +  K   ++C+SS
Sbjct: 84  ETLGRQCFYASLTPVDVRISAVDGTRKYLFELSDGNV-----IESVLMRYKHGNSVCISS 138

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC +    L RNL   E+L Q+   +   G+                 ++S
Sbjct: 139 QVGCRMGCRFCASTLDGLERNLKPSEMLEQIYRIQRDTGE-----------------RVS 181

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           N+V+MG GEP+ N+DN+ + + + +D  GL+ S+R +T+ST G VP I +  EE + V L
Sbjct: 182 NVVVMGSGEPMDNYDNLIRFIHLLTDENGLNISQRNVTVSTCGIVPRIRQFAEEGLQVTL 241

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA ++++R  L+P+ + Y L  ++DAC +Y   +   R+TFEY ++KG+ND+  +A
Sbjct: 242 ALSLHAPNDEVRKTLMPVAKSYALRDVLDACHYYFEKTGR-RLTFEYSLVKGVNDNLEEA 300

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L +++K     +NLIP NP    +Y  SD+K I  F   ++R G +  +R   G DI 
Sbjct: 301 RALAELIKDQHGHVNLIPVNPIKERDYKQSDRKAIEDFKNYLERRGINVTVRREMGRDID 360

Query: 360 AACGQLK 366
            ACGQL+
Sbjct: 361 GACGQLR 367


>gi|218290479|ref|ZP_03494599.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239500|gb|EED06695.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 348

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 209/365 (57%), Gaps = 27/365 (7%)

Query: 7   ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
             L     EEL + ++ ++G        R  Q+++W+Y +  + F  M+++ + +R  LN
Sbjct: 2   VHLYDFTMEELRDWVVRELG----ERPFRAVQLYEWMYQKRAKSFDEMTNLPKALRQRLN 57

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +   +   E V  + S  D T K+LL +P       V +E+V +  +   ++CVSSQVGC
Sbjct: 58  EIAYLRSAEQVVRQDSKVDPTTKFLLAWPD-----GVTVESVLMRHRYGNSVCVSSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    ++RN+TA E++ QVL +++LL +               G+++S++V+
Sbjct: 113 KMGCTFCASTLGGMIRNMTAGEMVEQVLHSQALLDEI--------------GQRVSSVVV 158

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MG GEP+ N+D V + + I ++  GL+  +R IT+ST G VP I R+ EE   + LA+SL
Sbjct: 159 MGSGEPMDNYDQVMRFIDIITNEHGLNIGQRHITVSTVGLVPGIRRLAEEGRNITLAVSL 218

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++ +R  ++P+N+ YP+  L++AC  Y   +   RI+FEY ++ G NDS   A  L 
Sbjct: 219 HAPNDAIRGRMMPVNKAYPIAKLMEACHDYYRKTGR-RISFEYALVAGENDSLECAKELA 277

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++KG+P  +NLIP N  P   Y  +D+K I  F   +  +G ++ IR   G DI AACG
Sbjct: 278 ELVKGLPCHVNLIPVNYVPERGYRRTDRKQIFAFWRALLDAGVNATIRREMGHDIAAACG 337

Query: 364 QLKSL 368
           QL++ 
Sbjct: 338 QLRAQ 342


>gi|306832938|ref|ZP_07466070.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338]
 gi|304424837|gb|EFM27971.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338]
          Length = 368

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 212/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL E  ++ G      + R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 9   KPSIYALTRDELIEWAIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAVLN 64

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + + DGT K+L   P   +     IETV + +    ++CV+SQVGC+
Sbjct: 65  ENFCVNPLKQRVVQEASDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTSQVGCN 119

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +G  K  R+LT+ EI  Q+++ +    +                 ++S++V+M
Sbjct: 120 IGCSFCASGLLKKQRDLTSGEITSQIMMVQKYFDE------------RGQDERVSHVVVM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV + L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 168 GIGEPFDNYNNVLRFLRTINDDNGLAIGARHITVSTSGLAHKIRDFAHESLQVNLAVSLH 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ +NR +PLE L  A  +Y   +N  R+TFEY+ML  +ND P +A  L  
Sbjct: 228 APNNELRSQIMRVNRSFPLEKLFAAIEYYVETTNR-RVTFEYIMLNEVNDFPENAQELAD 286

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + INLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYSRSSKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 346

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 347 CGQLRSNTMKRDR 359


>gi|167037727|ref|YP_001665305.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040388|ref|YP_001663373.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
           sp. X514]
 gi|256752274|ref|ZP_05493137.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914472|ref|ZP_07131788.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
 gi|307724292|ref|YP_003904043.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
 gi|320116142|ref|YP_004186301.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|205829918|sp|B0KA06|RLMN_THEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829919|sp|B0K1Y9|RLMN_THEPX RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|166854628|gb|ABY93037.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X514]
 gi|166856561|gb|ABY94969.1| radical SAM enzyme, Cfr family [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256748842|gb|EEU61883.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889407|gb|EFK84553.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
 gi|307581353|gb|ADN54752.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
 gi|319929233|gb|ADV79918.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 342

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 202/368 (54%), Gaps = 30/368 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  M  EE+EE  + IG      R R  QI+KWIY + + DF  M+DIS+ +R  L + 
Sbjct: 3   NLKDMTLEEMEEFFVNIG----ESRYRAKQIYKWIYGKKVTDFDQMTDISKNLRSKLKEI 58

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             +   +I + ++S  D T K+L       I     IE V I  +   T CVS+QVGC++
Sbjct: 59  AYVSQLKIEERRVSEIDDTVKYLFLLEDGNI-----IEGVAIKYRFGNTACVSTQVGCNM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +     VR+L A E++ QV+   S  G                  KISNIV+MG
Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQVMAIDSDYG------------------KISNIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+D V K + I ++  GL    R IT+ST G VP I +  +E + V L+ISLHA
Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  L+PIN+ YPLE L+ AC++Y   +  RRITFEY +++G+ND    A  L+ +
Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYVDKT-RRRITFEYSLIEGVNDKKEHAYQLVDL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   INLIP N      +  ++ + ++ F   I+ +G S  +R   G DI AACGQL
Sbjct: 275 LKGMLCHINLIPINYVREIGFKKANNEKVMMFKRIIEDAGISCTVRRELGSDIEAACGQL 334

Query: 366 KSLSKRIP 373
           +    +  
Sbjct: 335 RRKYLKER 342


>gi|312866070|ref|ZP_07726291.1| 23S rRNA m2A2503 methyltransferase [Streptococcus downei F0415]
 gi|311098474|gb|EFQ56697.1| 23S rRNA m2A2503 methyltransferase [Streptococcus downei F0415]
          Length = 375

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 209/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R++L +  L+ G      + R SQIW W+Y + ++ F  M++IS++   LL 
Sbjct: 14  KPSIYSLTRDQLIDWSLEHG----QKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLK 69

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F     +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 70  ENFDFNPLKQRIVQESADGTIKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 124

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI  Q++L +  L D               G ++S++V+M
Sbjct: 125 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYLDD------------QGNGERVSHVVVM 172

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV + L   +D  GL+   R IT+STSG    I     E I V LA+SLH
Sbjct: 173 GIGEPFDNYDNVIRFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGIQVNLAVSLH 232

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +PLE L DA  +Y   +N  R+TFEY+ML  +ND P +A  L  
Sbjct: 233 APNNELRSSIMRINRSFPLEKLFDAIEYYIQTTNR-RVTFEYIMLNEVNDYPENAQELAD 291

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+N     + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 292 LTKSIRKLSYVNLIPYNAVSEHDQYSRSTKERVDAFYDVLKKNGVNCVVRQEHGTDIDAA 351

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 352 CGQLRSNTMKRDR 364


>gi|197122634|ref|YP_002134585.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. K]
 gi|196172483|gb|ACG73456.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. K]
          Length = 372

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 148/378 (39%), Positives = 214/378 (56%), Gaps = 19/378 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  + +E L   +  +G        R  Q+++W+++RG    + M+D+ + +R  L +
Sbjct: 9   PDLRSLPQERLAALIAGLG----EKPFRARQVYRWLHLRGAASLEEMTDVPRALRERLAE 64

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +   E   E+ S DGT KW  R      G    IE+VY+PE  R TLCVS+QVGC++
Sbjct: 65  GTRLTTLERATEQRSADGTIKWTWRT-----GDGKLIESVYMPETDRKTLCVSTQVGCAV 119

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TGT  L RNL   EI+ QV  A   L +    E           R ++N+V MG
Sbjct: 120 GCTFCMTGTMGLARNLGPGEIVDQVHRANRRLIELGEGEGP---------RPLTNLVFMG 170

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+ ++K +L +     G +FS R +T+STSG VP + R+GEE  V LA+SL+A 
Sbjct: 171 MGEPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPVMRRLGEETQVKLAVSLNAT 230

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++  R+ ++PINR+YPL  L+ ACR +P +   RRITFEYVML G+ND+P DA  L ++L
Sbjct: 231 TDAQRDAIMPINRRYPLAELLRACREFP-MKQGRRITFEYVMLGGVNDAPEDAERLARLL 289

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +GIPAK+NLIP+N  PG  +       +  F + +     ++ +R  RG DI AACGQL 
Sbjct: 290 RGIPAKVNLIPYNENPGLGFAAPAPAAVERFRDLLVARNVTAVVRKNRGTDIAAACGQLA 349

Query: 367 SLSKRIPKVPRQEMQITG 384
           +         R    +TG
Sbjct: 350 AEGGPGDPRRRAGAPLTG 367


>gi|289433758|ref|YP_003463630.1| radical SAM family protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170002|emb|CBH26542.1| radical SAM family protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 367

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 136/380 (35%), Positives = 221/380 (58%), Gaps = 28/380 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L + G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEEHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +   E    + S DGT K+L +     +     IETV + ++   ++CV++QVG
Sbjct: 57  LTANFVMSTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +              +   ++  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR  ++ IN+ Y +E L++A  +Y   +N  RITFEY+MLKG+ND  ++AL L
Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKTNR-RITFEYIMLKGVNDHKKEALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G DI 
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQE 379
           AACGQL+  SK+I +V  +E
Sbjct: 339 AACGQLR--SKQIKRVGIRE 356


>gi|260588063|ref|ZP_05853976.1| radical SAM enzyme, Cfr family [Blautia hansenii DSM 20583]
 gi|260541590|gb|EEX22159.1| radical SAM enzyme, Cfr family [Blautia hansenii DSM 20583]
          Length = 348

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 202/365 (55%), Gaps = 29/365 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +++  +  +   +L+  ++++G        R  QI++W++ +    F  MS++S  +R  
Sbjct: 1   MEQIEIKSLSLVQLKNVMIEMG----EKAFRAKQIYEWLHQKQAESFDEMSNLSAALREK 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L +   +   ++++ + S  DGT+K+L   P   +     +E+V +  K   ++C+SSQV
Sbjct: 57  LKERCVLTTLKMLEVQTSKIDGTQKYLFALPDGNV-----VESVLMKYKHGNSVCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +      RNL   E+L Q+   + L G+                 ++SN+
Sbjct: 112 GCKMGCRFCASTIGGWTRNLLPSEMLEQIYRIQKLSGE-----------------RVSNV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL N++N+ + + + +D  GL  S+R +T+ST G VP +  + EE + + LAI
Sbjct: 155 VVMGTGEPLDNYENLLQFIRLLTDENGLHISQRNLTVSTCGIVPKMYALAEENLQITLAI 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA + + R  L+PI  KY +E +++ACR+Y   +   R+TFEY ++ G ND+  DA  
Sbjct: 215 SLHASNQEKRAELMPIANKYSIEEVLEACRNYFEKTGR-RLTFEYSLVGGKNDTKEDAEE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L +++KG+   +NLIP NP    +Y+ SD+K I  F   +++   +  IR   G DI  A
Sbjct: 274 LARLIKGLNCHVNLIPVNPIKERDYVQSDKKVIENFKNKLEKYQINVTIRREMGRDIDGA 333

Query: 362 CGQLK 366
           CGQL+
Sbjct: 334 CGQLR 338


>gi|319947501|ref|ZP_08021733.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641]
 gi|319746441|gb|EFV98702.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641]
          Length = 362

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 211/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL E   + G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYGLTRQELIEWAEENG----EKKFRATQIWEWLYRKRVQSFEEMTNLSKDLIETLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F I   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVINPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L + EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV   +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVLSFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LLKKIKKLSYVNLIPYNPVSEHDQYSRSPRERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|291563554|emb|CBL42370.1| 23S rRNA m(2)A-2503 methyltransferase [butyrate-producing bacterium
           SS3/4]
          Length = 348

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 116/365 (31%), Positives = 196/365 (53%), Gaps = 29/365 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+ L  M  EEL E + ++G        R  Q+++W++V+        +++ + ++  
Sbjct: 1   MEKKDLKSMTLEELTEFVKELG----EKPFRAKQLYQWMHVKLAESLDECTNLPKSLKEK 56

Query: 64  LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L+++ +    + V    S  DGTRK+L       +     IE+V +      ++C+SSQV
Sbjct: 57  LSEYSTYTSLKTVKMLESGIDGTRKYLFGLDDGNV-----IESVLMKYHHGNSVCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L RNL   E+L Q+   +   G+                 ++SN+
Sbjct: 112 GCRMGCRFCASTLDGLTRNLRPSEMLDQIYRIQRSTGE-----------------RVSNV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEP+ N+DN+ + + + SD  GL+ S+R IT+ST G VP I ++ EE + + LA+
Sbjct: 155 VVMGSGEPMDNYDNLIRFIRLLSDENGLNISQRNITVSTCGIVPKILKLAEEGLSITLAL 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++ R  L+PI   Y L  ++ AC+ Y   +   R+TFEY +++G+ND+  +A  
Sbjct: 215 SLHAPDDETRKTLMPIANSYSLSEVLPACKEYYKKTGR-RLTFEYSLVQGVNDNLDEAKR 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LK +   +NLIP NP    ++  S++  I  F   +++ G +  IR   G DI  A
Sbjct: 274 LTALLKDMQGHVNLIPVNPIKERDFKQSNRDAIDAFRGYLEKHGINVTIRREMGRDIGGA 333

Query: 362 CGQLK 366
           CGQL+
Sbjct: 334 CGQLR 338


>gi|212704175|ref|ZP_03312303.1| hypothetical protein DESPIG_02230 [Desulfovibrio piger ATCC 29098]
 gi|212672379|gb|EEB32862.1| hypothetical protein DESPIG_02230 [Desulfovibrio piger ATCC 29098]
          Length = 357

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 206/370 (55%), Gaps = 27/370 (7%)

Query: 7   ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
            +L+     EL + +  ++G P    + R  Q+W+WI+ +  RDF  M+++S+  R  L 
Sbjct: 2   INLLDYTLPELTDWMQNELGEP----KFRAVQVWQWIWQKMARDFDAMTNVSKACRERLA 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120
           Q   I +PEIV  + S D T K+LLR          E+ETV IP  S     R T C+SS
Sbjct: 58  QCAEIRWPEIVTVEQSSDDTTKFLLRLQD-----GAEVETVLIPSDSREGVRRWTQCLSS 112

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C+FC TGT    RN+T  EIL Q+L+AR  LGD      +           + 
Sbjct: 113 QVGCAMACTFCSTGTMGFERNMTMGEILGQILVAREHLGDTRPDWPV-----------LR 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V MGMGEPL N  NV ++L   ++  GL+FS RRIT+ST G    +  +GE     LA
Sbjct: 162 NLVFMGMGEPLLNLKNVMRALESLNNDKGLNFSPRRITVSTCGIEKGLRELGESGLAYLA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA + +LR  ++P   ++PLE L+ A + YP L    RITFEY++L G+ND    A 
Sbjct: 222 VSLHAPTQELRARIMPKAARWPLEDLLQALKSYP-LKTRERITFEYLLLGGVNDGLEQAR 280

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++  +  K+NLI +NP  G  Y     + ++ F + +     ++ IR  +G DI A
Sbjct: 281 QLARVVSDVKGKLNLIVYNPSEGDPYKAPSPERVLAFEQYLWDRNITAIIRKSKGQDIKA 340

Query: 361 ACGQLKSLSK 370
           ACGQLK+  +
Sbjct: 341 ACGQLKAARQ 350


>gi|313905219|ref|ZP_07838587.1| radical SAM enzyme, Cfr family [Eubacterium cellulosolvens 6]
 gi|313469972|gb|EFR65306.1| radical SAM enzyme, Cfr family [Eubacterium cellulosolvens 6]
          Length = 351

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 129/362 (35%), Positives = 206/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             +  M+  EL+EAL ++G        R  Q+++W++ + +  ++ M+++S+ +R  L  
Sbjct: 5   TDIKSMLPGELKEALAQMG----EKPFRAGQVFEWLHDKRVEKYEEMTNLSKVLREKLAD 60

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            + +   ++V E+IS  DGTRK+L   P   +     IE+V++      ++C+SSQVGC 
Sbjct: 61  SYPLTTLQVVREEISKVDGTRKYLFALPDHNV-----IESVWMKYHHGNSVCISSQVGCR 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    LVR+LTA E+L QV   + + G+                 ++SNIV+M
Sbjct: 116 MGCRFCASTLGGLVRSLTASEMLEQVYQIQRVTGE-----------------RVSNIVIM 158

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N++NV + + + S   GL+ S+R IT+ST G VPNI R+ EE + V LAISLH
Sbjct: 159 GSGEPLENYENVVRFVQLVSHEKGLNLSQRNITISTCGIVPNIRRLAEEELSVTLAISLH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++ R  L+PI  KY +  ++DACR+Y   +   R+TFEY +  G NDS  DA  L +
Sbjct: 219 APTDEKRKKLMPIANKYSIAEIMDACRYYFDKTGR-RLTFEYALTGGQNDSDEDAAELAR 277

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  +   +NLIP NP     ++  ++  ++ F   ++  G +  IR   G DI  ACGQ
Sbjct: 278 LLAHLNCHVNLIPVNPVRERSFIRPNRTAVLAFQNKLENFGINVTIRREMGSDINGACGQ 337

Query: 365 LK 366
           L+
Sbjct: 338 LR 339


>gi|24379004|ref|NP_720959.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           mutans UA159]
 gi|81588375|sp|Q8DVG8|RLMN_STRMU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|24376896|gb|AAN58265.1|AE014897_11 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 361

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 131/373 (35%), Positives = 211/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R +L    ++ G      + R +QIW W+Y + ++ F+ M+++S++   LLN
Sbjct: 2   KPSIYSLTRNDLIAWTIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  ENFLVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI  Q++L +    +               G +IS++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERISHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFLRTINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +PLE L  A  +Y   +N  R+TFEY+ML G+NDSP +A  L  
Sbjct: 221 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDSPENAQELAD 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|213621172|ref|ZP_03373955.1| hypothetical protein SentesTyp_28162 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 315

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 148/329 (44%), Positives = 194/329 (58%), Gaps = 18/329 (5%)

Query: 40  KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG 99
           KW+Y     +F  M+DI++ +R  L +   I  PE+V+E+ S DGT KW +         
Sbjct: 1   KWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD----- 55

Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159
              +ETVYIPE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV  A  ++G
Sbjct: 56  -QRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG 114

Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
                         +  R I+N+VMMGMGEPL N  NV  ++ I  D  G   SKRR+TL
Sbjct: 115 ----------AAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTL 164

Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           STSG VP + ++G+ I V LAISLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA
Sbjct: 165 STSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNA 224

Query: 280 R--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
              R+T EYVML  +ND    A  L ++LK  P KINLIP+NP+PG  Y  S    I  F
Sbjct: 225 NQGRVTIEYVMLDHVNDGTEHAHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRF 284

Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLK 366
           S+ +   G+++ +R  RG DI AACGQL 
Sbjct: 285 SKVLMSYGFTTIVRKTRGDDIDAACGQLA 313


>gi|325662241|ref|ZP_08150856.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471493|gb|EGC74714.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 358

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 199/366 (54%), Gaps = 29/366 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+ +     EEL+E +  IG        R  Q+++W++V+ +R F  M+++S+ +R  L
Sbjct: 4   EKKDIGSFRFEELKEEMTSIG----EKAFRAKQVYEWLHVKLVRSFDEMTNLSKPLREKL 59

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            + + I   E++D ++S  DGT K+L R     +     +E+V +  K   ++C+SSQVG
Sbjct: 60  ARQYEIREVEMLDRQVSAMDGTNKFLFRLSDGHV-----VESVLMKYKHGNSVCISSQVG 114

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +    L RNLT  E+L Q+   + + G+                 +++N+V
Sbjct: 115 CRMGCRFCASTIGGLERNLTPSEMLGQIYQIQRISGE-----------------RVANVV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG GEPL N++N+ K + + +D  GL  S+R +T+ST G VP +  + EE + + LA+S
Sbjct: 158 VMGTGEPLDNYENLLKFIQMLTDEHGLHISQRNVTVSTCGIVPKMLELAEEHLQITLALS 217

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH  + + R  L+P+  KY L  +++AC  Y   +   R+TFEY ++ G+ND+  DA  L
Sbjct: 218 LHGSTQEKRKKLMPVANKYELSEVLEACDIYFAKTGR-RMTFEYSLVHGVNDTEEDAKEL 276

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +L      INLIP NP    ++    ++    F   +++SG +  IR   G DI  AC
Sbjct: 277 SALLSHKNCHINLIPVNPIKERDFERPTREAAEKFKNKLEKSGINVTIRREMGSDIDGAC 336

Query: 363 GQLKSL 368
           GQL+  
Sbjct: 337 GQLRKR 342


>gi|16799559|ref|NP_469827.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
           Clip11262]
 gi|46906726|ref|YP_013115.1| ribosomal RNA large subunit methyltransferase N [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47092541|ref|ZP_00230330.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
           str. 4b H7858]
 gi|217965434|ref|YP_002351112.1| radical SAM enzyme, Cfr family [Listeria monocytogenes HCC23]
 gi|226223105|ref|YP_002757212.1| conserved hypothetical protein, highly similar to B. subtilis YloN
           protein [Listeria monocytogenes Clip81459]
 gi|254824244|ref|ZP_05229245.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|254829423|ref|ZP_05234110.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|254830533|ref|ZP_05235188.1| hypothetical protein Lmon1_04192 [Listeria monocytogenes 10403S]
 gi|254853849|ref|ZP_05243197.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|254933233|ref|ZP_05266592.1| 23S rRNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|254993511|ref|ZP_05275701.1| hypothetical protein LmonocytoFSL_11352 [Listeria monocytogenes FSL
           J2-064]
 gi|255521363|ref|ZP_05388600.1| hypothetical protein LmonocFSL_09075 [Listeria monocytogenes FSL
           J1-175]
 gi|284800757|ref|YP_003412622.1| hypothetical protein LM5578_0505 [Listeria monocytogenes 08-5578]
 gi|284993943|ref|YP_003415711.1| hypothetical protein LM5923_0504 [Listeria monocytogenes 08-5923]
 gi|81403675|sp|Q723G9|RLMN_LISMF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81595444|sp|Q92EH6|RLMN_LISIN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807187|sp|B8DCJ5|RLMN_LISMH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|259491990|sp|C1KZZ3|RLMN_LISMC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|16412924|emb|CAC95716.1| lin0484 [Listeria innocua Clip11262]
 gi|46879991|gb|AAT03292.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019133|gb|EAL09877.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
           str. 4b H7858]
 gi|217334704|gb|ACK40498.1| radical SAM enzyme, Cfr family [Listeria monocytogenes HCC23]
 gi|225875567|emb|CAS04270.1| Putative conserved hypothetical protein, highly similar to B.
           subtilis YloN protein [Listeria monocytogenes serotype
           4b str. CLIP 80459]
 gi|258601839|gb|EEW15164.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258607233|gb|EEW19841.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|284056319|gb|ADB67260.1| hypothetical protein LM5578_0505 [Listeria monocytogenes 08-5578]
 gi|284059410|gb|ADB70349.1| hypothetical protein LM5923_0504 [Listeria monocytogenes 08-5923]
 gi|293584792|gb|EFF96824.1| 23S rRNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|293593478|gb|EFG01239.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|307570010|emb|CAR83189.1| conserved hypothetical protein [Listeria monocytogenes L99]
 gi|328467548|gb|EGF38610.1| ribosomal RNA large subunit methyltransferase N [Listeria
           monocytogenes 1816]
 gi|332310902|gb|EGJ23997.1| Ribosomal RNA large subunit methyltransferase N [Listeria
           monocytogenes str. Scott A]
          Length = 367

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 135/386 (34%), Positives = 219/386 (56%), Gaps = 27/386 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +   E    + S DGT K+L +     +     IETV + ++   ++CV++QVG
Sbjct: 57  LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +              +   ++  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR  ++ IN+ Y +E L++A  +Y   +N  RITFEY+MLKG+ND  ++AL L
Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G DI 
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338

Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384
           AACGQL+S   KR+    R + +   
Sbjct: 339 AACGQLRSKQIKRVGVRERMKQKQAA 364


>gi|116871870|ref|YP_848651.1| hypothetical protein lwe0450 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123460725|sp|A0AFT6|RLMN_LISW6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|116740748|emb|CAK19868.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 367

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 135/386 (34%), Positives = 219/386 (56%), Gaps = 27/386 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +   E    + S DGT K+L +     +     IETV + ++   ++CV++QVG
Sbjct: 57  LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +              +   ++  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR  ++ IN+ Y +E L++A  +Y   +N  RITFEY+MLKG+ND  ++AL L
Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G DI 
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338

Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384
           AACGQL+S   KR+    R + +   
Sbjct: 339 AACGQLRSKQIKRVGVRERMKQKQAA 364


>gi|255021262|ref|ZP_05293311.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
           caldus ATCC 51756]
 gi|254969273|gb|EET26786.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
           caldus ATCC 51756]
          Length = 357

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 170/360 (47%), Positives = 217/360 (60%), Gaps = 26/360 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+G+ R  L   L + G P      R SQI +W++ R + DF  MS+IS+ +R  L  
Sbjct: 2   PHLLGLDRAGLVALLQEWGEPP----FRASQILQWLHQRQVDDFAAMSNISKALRARLMA 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
                 PE++ ++++ D TRKWLLR P         IETV+IPE+ RGTLC+SSQVGCSL
Sbjct: 58  ETRWDEPEVIADQLARDETRKWLLRLPD-----GNAIETVFIPEEDRGTLCISSQVGCSL 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC TG Q L RNL++ EI+ QV +AR  LG                   I+N+V MG
Sbjct: 113 ACSFCATGAQGLNRNLSSHEIVAQVRVARRHLGLDA----------------ITNVVFMG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N   V   + +  D      S RR+T+ST+G +P + ++G E  V LAISLHA 
Sbjct: 157 MGEPLLNLKQVIPVIRLLLDDFAYGLSSRRVTVSTAGVLPGLEQLGRETPVNLAISLHAS 216

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            NDLR+ LVPINR YPL  L+ ACR YP L   RRITFEYVML G+NDS  DA  L+++L
Sbjct: 217 RNDLRDELVPINRHYPLAQLMAACRSYP-LPPRRRITFEYVMLDGVNDSDADARALVRLL 275

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +G+PA +NLIPFNP+PG  Y  S    I  F E +  +G  +  R PRG DI AACGQL 
Sbjct: 276 RGLPALVNLIPFNPFPGSPYRRSSLARIDAFREIVLSAGIMTVTRRPRGDDIAAACGQLA 335


>gi|331086042|ref|ZP_08335125.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406965|gb|EGG86470.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 358

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 199/366 (54%), Gaps = 29/366 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+ +     EEL+E +  IG        R  Q+++W++V+ +R F  M+++S+ +R  L
Sbjct: 4   EKKDIGSFRFEELKEEMTSIG----EKAFRAKQVYEWLHVKLVRSFDEMTNLSKPLREKL 59

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            + + I   E++D ++S  DGT K+L R     +     +E+V +  K   ++C+SSQVG
Sbjct: 60  ARQYEIREVEMLDRQVSAMDGTNKFLFRLSDGHV-----VESVLMKYKHGNSVCISSQVG 114

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +    L RNLT  E+L Q+   + + G+                 +++N+V
Sbjct: 115 CRMGCRFCASTIGGLERNLTPSEMLGQIYQIQRISGE-----------------RVANVV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG GEPL N++N+ K + + +D  GL  S+R +T+ST G VP +  + EE + + LA+S
Sbjct: 158 VMGTGEPLDNYENLLKFIQMLTDEHGLHISQRNVTVSTCGIVPKMLELAEEHLQITLALS 217

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH  + + R  L+P+  KY L  +++AC  Y   +   R+TFEY ++ G+ND+  DA  L
Sbjct: 218 LHGSTQEKRKKLMPVANKYELSEVLEACDIYFAKTGR-RMTFEYSLVHGVNDTEEDAKEL 276

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +L      INLIP NP    ++    ++    F   +++SG +  IR   G DI  AC
Sbjct: 277 SALLSHRNCHINLIPVNPIKERDFERPTREAAEKFKNKLEKSGINVTIRREMGSDIDGAC 336

Query: 363 GQLKSL 368
           GQL+  
Sbjct: 337 GQLRKR 342


>gi|290892377|ref|ZP_06555371.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|290557943|gb|EFD91463.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J2-071]
          Length = 367

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 136/380 (35%), Positives = 220/380 (57%), Gaps = 28/380 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +   E    + S DGT K+L +     +     IETV + ++   ++CV++QVG
Sbjct: 57  LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +              +   ++  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR  ++ IN+ Y +E L++A  +Y   +N  RITFEY+MLKG+ND  ++AL L
Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G DI 
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQE 379
           AACGQL+  SK+I +V  +E
Sbjct: 339 AACGQLR--SKQIKRVGVRE 356


>gi|289578505|ref|YP_003477132.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
 gi|289528218|gb|ADD02570.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
          Length = 342

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 139/368 (37%), Positives = 202/368 (54%), Gaps = 30/368 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  M  EE+EE  + IG      R R  QI+KWIY + I DF  M+DIS+ +R  L + 
Sbjct: 3   NLKNMTLEEMEEFFVNIG----ESRYRAKQIYKWIYGKKITDFDKMTDISKNLRSKLKEI 58

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   ++   ++S  D T K+L     + I     IE V I  +   T CVS+QVGC++
Sbjct: 59  AYISQLKVEARRVSEIDNTVKYLFLLEDKNI-----IEGVAIKYRFGNTACVSTQVGCNM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +     VR+L A E++ QV+   S  G                  KISNIV+MG
Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQVMSIDSDYG------------------KISNIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+D V K + I ++  GL    R IT+ST G +P I +  +E + V L+ISLHA
Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  L+PIN+ YPLE L+ AC++Y   +  RRITFEY +++G+ND    A  L+ +
Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYIEKT-RRRITFEYSLIEGVNDKKEHAYQLVDL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N      +  +  + ++ F + I+ +G S  +R   G DI AACGQL
Sbjct: 275 LKGMLCHVNLIPINYVKEIGFKKAANEKVMMFKKIIENAGISCTVRRELGSDIEAACGQL 334

Query: 366 KSLSKRIP 373
           +    +  
Sbjct: 335 RRKYLKER 342


>gi|257870949|ref|ZP_05650602.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           gallinarum EG2]
 gi|257805113|gb|EEV33935.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
           gallinarum EG2]
          Length = 360

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 218/372 (58%), Gaps = 26/372 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ +E L   + +    Q   + RT+Q+W+W+Y + +  F+ M+++ + +   LN
Sbjct: 8   KPSIYGLTKESLSLWMTE----QEEKKFRTNQVWEWLYEKRVATFEEMTNLPKSLVTKLN 63

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I   + +  + + DGT K+L + P   +     IETV + ++   ++CV++QVGC+
Sbjct: 64  ESFVINPLKQIVLQEASDGTVKYLFQLPDNHM-----IETVLMRQEYGMSVCVTTQVGCN 118

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+LTA EI+ Q++L +    +             + G ++S++V+M
Sbjct: 119 IGCTFCASGLLKKQRDLTAGEIVAQIMLVQHYFDEL------------NAGERVSHVVVM 166

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV + L I +D  GL+   R IT+STSG    I    E  + V LAISLH
Sbjct: 167 GIGEPFDNYENVMQFLQIINDPKGLAIGARHITVSTSGLAHKIKEFAENGLQVNLAISLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N++R  ++ INR +P+E L++A  +Y   +N  RITFEY+ML  +ND P  A  L++
Sbjct: 227 APNNEVRTSMMRINRSFPIEKLMEAIDYYLEKTNR-RITFEYIMLDHVNDRPEHARQLVE 285

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK     + +NLIP+NP    + Y  S ++D++ F + +K++G +  IR   G DI AA
Sbjct: 286 LLKNKRKLSYVNLIPYNPVSEHDQYARSKKEDVLAFYDILKKNGINCVIRKEHGTDIDAA 345

Query: 362 CGQLKSLSKRIP 373
           CGQL+S   +  
Sbjct: 346 CGQLRSKQMKKQ 357


>gi|332363981|gb|EGJ41760.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK355]
          Length = 362

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+ E     G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   E    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLEQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR  ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    A  L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|300765131|ref|ZP_07075117.1| cfr family radical SAM enzyme [Listeria monocytogenes FSL N1-017]
 gi|300514102|gb|EFK41163.1| cfr family radical SAM enzyme [Listeria monocytogenes FSL N1-017]
          Length = 367

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 135/386 (34%), Positives = 219/386 (56%), Gaps = 27/386 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +   E    + S DGT K+L +     +     IETV + ++   ++CV++QVG
Sbjct: 57  LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +              +   ++  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR  ++ IN+ Y +E L++A  +Y   +N  RITFEY+MLKG+ND  ++AL L
Sbjct: 220 LHAPNNELRMSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G DI 
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338

Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384
           AACGQL+S   KR+    R + +   
Sbjct: 339 AACGQLRSKQIKRVGVRERMKQKQAA 364


>gi|302386502|ref|YP_003822324.1| radical SAM enzyme, Cfr family [Clostridium saccharolyticum WM1]
 gi|302197130|gb|ADL04701.1| radical SAM enzyme, Cfr family [Clostridium saccharolyticum WM1]
          Length = 350

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 123/365 (33%), Positives = 206/365 (56%), Gaps = 29/365 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  +  +  E+L   +  IG        R  Q+++W++ +   DF  M+++   ++  
Sbjct: 1   MEKIDIKSLNMEQLTAYVAAIG----EKTFRAKQLYEWMHQKLAADFNEMTNLPNSLKET 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L Q   +    IV+EKIS  DGTRK+L       +     IE+V +  K   ++C+SSQV
Sbjct: 57  LFQQTELTSLAIVEEKISNIDGTRKYLFALSDGNV-----IESVLMKYKHGNSVCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L RNL+  E+L Q+   +   G+                 ++SN+
Sbjct: 112 GCRMGCRFCASTLDGLERNLSPSEMLDQIYRIQKNTGE-----------------RVSNV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL N+D++ + + + +D  GL+ S+R IT+ST G VP I ++ EE + + LA+
Sbjct: 155 VVMGSGEPLDNYDHLVQFVRLLTDENGLNISQRNITVSTCGIVPGILKLAEEDLQITLAL 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA ++++R  L+P+  ++PL+ ++DAC+ Y   +   R+TFEY ++ G+ND+ ++A  
Sbjct: 215 SLHAPNDEVRKTLMPVANRFPLKDVLDACQTYFEKTGR-RLTFEYSLVSGVNDNLKEASA 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LKG    +NLIP NP     ++ SD+K I  F   ++++G +  IR   G DI  A
Sbjct: 274 LAALLKGQHGHVNLIPVNPIKERNFVQSDRKAIEAFKNLLEKNGINVTIRREMGRDINGA 333

Query: 362 CGQLK 366
           CGQL+
Sbjct: 334 CGQLR 338


>gi|327489556|gb|EGF21349.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1058]
          Length = 362

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 209/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+ E     G      + R SQIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEMIEWAEAQG----EKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR  ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND   +A  L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEEAKELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|324990694|gb|EGC22630.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK353]
 gi|324993429|gb|EGC25349.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK405]
 gi|327461703|gb|EGF08034.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1]
          Length = 362

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+ E     G      + R SQIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEMIEWAEAQG----EKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR  ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    A  L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|47094708|ref|ZP_00232323.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224500691|ref|ZP_03669040.1| hypothetical protein LmonF1_13881 [Listeria monocytogenes Finland
           1988]
 gi|254900292|ref|ZP_05260216.1| hypothetical protein LmonJ_10775 [Listeria monocytogenes J0161]
 gi|254911154|ref|ZP_05261166.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254935482|ref|ZP_05267179.1| 23S rRNA methyltransferase [Listeria monocytogenes F6900]
 gi|255026212|ref|ZP_05298198.1| hypothetical protein LmonocytFSL_07400 [Listeria monocytogenes FSL
           J2-003]
 gi|47016848|gb|EAL07766.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258608058|gb|EEW20666.1| 23S rRNA methyltransferase [Listeria monocytogenes F6900]
 gi|293589079|gb|EFF97413.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 367

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 135/386 (34%), Positives = 218/386 (56%), Gaps = 27/386 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+    L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +   E    + S DGT K+L +     +     IETV + ++   ++CV++QVG
Sbjct: 57  LTANFVMNTLEEQVVQESADGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +              +   ++  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR  ++ IN+ Y +E L++A  +Y   +N  RITFEY+MLKG+ND  ++AL L
Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G DI 
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338

Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384
           AACGQL+S   KR+    R + +   
Sbjct: 339 AACGQLRSKQIKRVGVRERMKQKQAA 364


>gi|125717485|ref|YP_001034618.1| radical SAM family Fe-S oxidoreductase [Streptococcus sanguinis
           SK36]
 gi|262282762|ref|ZP_06060530.1| cfr family radical SAM enzyme [Streptococcus sp. 2_1_36FAA]
 gi|205829909|sp|A3CLL3|RLMN_STRSV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|125497402|gb|ABN44068.1| Fe-S-cluster redox enzyme/radical SAM enzyme, Cfr family, putative
           [Streptococcus sanguinis SK36]
 gi|262262053|gb|EEY80751.1| cfr family radical SAM enzyme [Streptococcus sp. 2_1_36FAA]
 gi|325697044|gb|EGD38931.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK160]
 gi|327458790|gb|EGF05138.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1057]
 gi|327473422|gb|EGF18842.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK408]
 gi|328945604|gb|EGG39755.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1087]
 gi|332362856|gb|EGJ40649.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK49]
          Length = 362

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+ E     G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR  ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    A  L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|322385917|ref|ZP_08059558.1| cfr family radical SAM enzyme [Streptococcus cristatus ATCC 51100]
 gi|321270032|gb|EFX52951.1| cfr family radical SAM enzyme [Streptococcus cristatus ATCC 51100]
          Length = 362

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 207/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + REE+ E     G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTREEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L       +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELSDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR  ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    A  L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|16802525|ref|NP_464010.1| ribosomal RNA large subunit methyltransferase N [Listeria
           monocytogenes EGD-e]
 gi|224502216|ref|ZP_03670523.1| hypothetical protein LmonFR_06797 [Listeria monocytogenes FSL
           R2-561]
 gi|81592923|sp|Q8Y9P2|RLMN_LISMO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|16409858|emb|CAC98561.1| lmo0482 [Listeria monocytogenes EGD-e]
          Length = 367

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 135/386 (34%), Positives = 218/386 (56%), Gaps = 27/386 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+    L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +   E    + S DGT K+L +     +     IETV + ++   ++CV++QVG
Sbjct: 57  LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +              +   ++  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR  ++ IN+ Y +E L++A  +Y   +N  RITFEY+MLKG+ND  ++AL L
Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             +L      A +NLIP+NP     +Y  S ++D++ F + +K++G +  IR   G DI 
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338

Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384
           AACGQL+S   KR+    R + +   
Sbjct: 339 AACGQLRSKQIKRVGVRERMKQKQAA 364


>gi|327469049|gb|EGF14521.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK330]
          Length = 362

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 209/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+ E     G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F++   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFAVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR  ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    A  L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|331082368|ref|ZP_08331494.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330400854|gb|EGG80455.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 348

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 199/365 (54%), Gaps = 29/365 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +++  +  +   +L+  ++++G        R  QI++W++ +    F  MS++S  +R  
Sbjct: 1   MEQIEIKSLSLMQLKNTMIEMG----EKAFRAKQIYEWLHQKQAESFDEMSNLSAALREK 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L +   +   ++++ + S  DGT+K+L   P   +     +E+V +  K   ++C+SSQV
Sbjct: 57  LKERCVLTTLKMLEVQTSKIDGTQKYLFALPDGNV-----VESVLMKYKHGNSVCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +      RNL   E+L Q+   + L G+                 ++SN+
Sbjct: 112 GCKMGCRFCASTIGGWTRNLLPSEMLEQIYRIQKLSGE-----------------RVSNV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL N+DN+ + + + +D  GL  S+R +T+ST G VP +  + EE + + LAI
Sbjct: 155 VVMGTGEPLDNYDNLLQFIRLLTDENGLHISQRNVTVSTCGIVPKMYELAEENLQITLAI 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +   R  L+PI  KY +  +++ACR+Y   +   R+TFEY ++ G ND+  DA  
Sbjct: 215 SLHASNQAKRAELMPIANKYSINEVLEACRNYFEKTGR-RLTFEYSLVGGKNDTKEDAEE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  ++KG+   +NLIP NP    +Y+ SD+K I  F   +++   +  IR   G DI  A
Sbjct: 274 LAHLIKGLNCHVNLIPVNPIKERDYVQSDKKVIENFKNKLEKYQINVTIRREMGRDIDGA 333

Query: 362 CGQLK 366
           CGQL+
Sbjct: 334 CGQLR 338


>gi|307708474|ref|ZP_07644939.1| radical SAM enzyme, Cfr family [Streptococcus mitis NCTC 12261]
 gi|307615390|gb|EFN94598.1| radical SAM enzyme, Cfr family [Streptococcus mitis NCTC 12261]
          Length = 361

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 211/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  EQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|254248069|ref|ZP_04941390.1| hypothetical protein BCPG_02893 [Burkholderia cenocepacia PC184]
 gi|124872845|gb|EAY64561.1| hypothetical protein BCPG_02893 [Burkholderia cenocepacia PC184]
          Length = 379

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 139/378 (36%), Positives = 206/378 (54%), Gaps = 12/378 (3%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M      +L+    E L      +G        R  Q+ +WI+     DF GM+D+++ +
Sbjct: 1   MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    SI+ P+I  + +S DGTRKWL+      +G    +ETV+IPE++RGTLCVSS
Sbjct: 57  REKLKGRASIVMPDIASDHVSTDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+ +A   L    G             R ++
Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+          N+  V  ++ +  D      S+RR+TLSTSG VP + R+G E+ V LA
Sbjct: 169 NVSDDEHERAALNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++ LR+ LVP+N+KYPL  L+ AC+ Y  ++    ITFEY ML G+ND+   A 
Sbjct: 229 VSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ + + +P K NLIPFNP+P    + S  + I  F++ +  +G  + +R  RG DI A
Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348

Query: 361 ACGQLKSLSKRIPKVPRQ 378
           ACGQL    K   ++  +
Sbjct: 349 ACGQLAGAVKDRTRLAER 366


>gi|315221970|ref|ZP_07863881.1| radical SAM enzyme, Cfr family [Streptococcus anginosus F0211]
 gi|315188936|gb|EFU22640.1| radical SAM enzyme, Cfr family [Streptococcus anginosus F0211]
          Length = 367

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 209/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R++L + +   G      + R +QIW+W+Y + ++ F  M++IS+ +   L 
Sbjct: 9   KPSIYSLTRQDLIDWVESQG----EKKFRATQIWEWLYRKRVQSFTEMTNISKGLLAKLE 64

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 65  DEFVVNPLKQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 119

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +               G ++S+IV+M
Sbjct: 120 IGCTFCASGLIKKQRDLNNGEIMSQIMLVQKYFDE------------RGQGERVSHIVVM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 168 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 228 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 286

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 287 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGINCVVRQEHGTDIDAA 346

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  K
Sbjct: 347 CGQLRSNTMKKDK 359


>gi|270292529|ref|ZP_06198740.1| radical SAM enzyme, Cfr family [Streptococcus sp. M143]
 gi|270278508|gb|EFA24354.1| radical SAM enzyme, Cfr family [Streptococcus sp. M143]
          Length = 361

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 211/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  EQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGIEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGINCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|323143782|ref|ZP_08078450.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT
           12066]
 gi|322416495|gb|EFY07161.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT
           12066]
          Length = 357

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 150/370 (40%), Positives = 209/370 (56%), Gaps = 21/370 (5%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           + +  +EL++  + +G        R +Q  KWIY  G+ DF  M++I +++R  L +   
Sbjct: 1   MNLGVDELKDFAVSLG----EKPFRATQFLKWIYQYGVTDFDLMTNIKKDLREKLKEIAC 56

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           I  PEIV E+ S DGT KW L      IG    +ETV IPE+ R TLC+S+QVGC + C+
Sbjct: 57  IKAPEIVTEQRSSDGTVKWAL-----DIGDGQLVETVLIPEEGRNTLCISTQVGCPVKCA 111

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG     RNL+  EI+ QV  A S +G                 + ISN+VMMGMGE
Sbjct: 112 FCRTGASGFNRNLSVSEIIGQVWRAASRVG----------FSQNEEQKPISNVVMMGMGE 161

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249
           PL N D V K   I  +    + SKRR+T+STSG  P I ++  ++ V LA+SLHA +++
Sbjct: 162 PLYNVDAVLKVTEILLNDNAFALSKRRVTISTSGVAPIIDKIAGKVDVALALSLHAPNDE 221

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILK 307
           LR++LVP+N+KY +++++ + R+Y   SNA   + T EYV+L  INDS   A  L ++LK
Sbjct: 222 LRDVLVPLNKKYKIDVVLKSVRNYLSKSNANCGKATIEYVLLDHINDSTDQAEELARLLK 281

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
             P KINLIPFNP    E+       +  F + +   GY+   RT RG DI AACGQL  
Sbjct: 282 DTPCKINLIPFNPHEQSEFKRPSNSRVDRFYKVLTGHGYTVMTRTTRGDDIAAACGQLAG 341

Query: 368 LSKRIPKVPR 377
             K      R
Sbjct: 342 QVKDKIAKNR 351


>gi|251782933|ref|YP_002997236.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391563|dbj|BAH82022.1| radical SAM family enzyme [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127736|gb|ADX25033.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 360

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 203/373 (54%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + RE+L    +  G      + R +QIW W+Y + ++ F  M++IS++   +L 
Sbjct: 2   KPSIYSLTREDLIAWAIDHG----QKKFRATQIWDWLYKKRVQSFDDMTNISKDFIAILK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  ENFCVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L + EI  Q++L +    +                 ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDE------------RGQDERVSHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV   L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYQNVMSFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INR +PLE L  A  +Y   +N  R+TFEY+ML  +ND    A  L  
Sbjct: 221 APNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAQELAD 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKKDR 352


>gi|325694144|gb|EGD36062.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK150]
          Length = 362

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 127/370 (34%), Positives = 207/370 (55%), Gaps = 26/370 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+ E     G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR  ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    A  L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKR 371
           CGQL+S + +
Sbjct: 340 CGQLRSNTMK 349


>gi|290580974|ref|YP_003485366.1| hypothetical protein SmuNN2025_1448 [Streptococcus mutans NN2025]
 gi|254997873|dbj|BAH88474.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 361

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 131/373 (35%), Positives = 211/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R +L    ++ G      + R +QIW W+Y + ++ F+ M+++S++   LLN
Sbjct: 2   KPSIYSLTRNDLIAWTIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  ENFLVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI  Q++L +    +               G +IS++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERISHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K L   +D  GL+   R IT+STSG    I     E + V LAISLH
Sbjct: 161 GIGEPFDNYDNVLKFLRTINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAISLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +PLE L  A  +Y   +N  R+TFEY+ML G+ND+P +A  L  
Sbjct: 221 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDNPENAQELAD 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|46581308|ref|YP_012116.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|81404173|sp|Q727F1|RLMN_DESVH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|46450729|gb|AAS97376.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234971|gb|ADP87825.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris RCH1]
          Length = 364

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 139/367 (37%), Positives = 202/367 (55%), Gaps = 27/367 (7%)

Query: 7   ESLIGMMREELEEAL-LKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
             ++ +  EELE  +  ++G P    R R  Q+W+W++ +  R F  M+++S+  R  L 
Sbjct: 2   TDILNLTYEELEAFMTAELGEP----RFRARQVWQWLWQKCARSFDEMTNVSKATRARLA 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-----TLCVSS 120
           +   I +PE+   + S DGT K+LLR     +     +ETV IP  SR      T C+S 
Sbjct: 58  EKAVITWPEVETVQKSADGTTKFLLRLADGAL-----VETVLIPSASREGTLRITQCLSC 112

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C+FC TGT    RN+T  EIL QVL+AR+ LGD      I           + 
Sbjct: 113 QVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVARAHLGDSRPDHPI-----------LR 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V MGMGEPL N + V +SL   +D  GLSFS RRIT+ST G    +  +GE     LA
Sbjct: 162 NLVFMGMGEPLLNLNEVMRSLRTLNDEFGLSFSPRRITVSTCGIEKGLRELGESGLAFLA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA + ++R  ++P    + L+ LI A   YP L    R+TFEY++L G+ND    A 
Sbjct: 222 VSLHAPNQEIRKRIMPKAAHWHLDDLITALESYP-LKTRERVTFEYLLLGGVNDGIEHAR 280

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L++++     K+NLI +NP  G  Y     + I+ F + +     ++ IR  +G DI A
Sbjct: 281 ELVRLVSRTKGKLNLIVYNPAEGDPYDAPTPERILAFEQYLWSKNITAIIRKSKGQDIKA 340

Query: 361 ACGQLKS 367
           ACGQLK+
Sbjct: 341 ACGQLKA 347


>gi|324995259|gb|EGC27171.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK678]
          Length = 362

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+ E     G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQGSADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR  ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    A  L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|120601511|ref|YP_965911.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           vulgaris DP4]
 gi|205829747|sp|A1VAL8|RLMN_DESVV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|120561740|gb|ABM27484.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfovibrio vulgaris DP4]
          Length = 364

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 139/367 (37%), Positives = 202/367 (55%), Gaps = 27/367 (7%)

Query: 7   ESLIGMMREELEEAL-LKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
             ++ +  EELE  +  ++G P    R R  Q+W+W++ +  R F  M+++S+  R  L 
Sbjct: 2   TDILNLTYEELEAFMTAELGEP----RFRARQVWQWLWQKCARSFDEMTNVSKATRARLA 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-----TLCVSS 120
           +   I +PE+   + S DGT K+LLR     +     +ETV IP  SR      T C+S 
Sbjct: 58  EKAVITWPEVETVQKSADGTTKFLLRLADGAL-----VETVLIPSASREGTLRITQCLSC 112

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C+FC TGT    RN+T  EIL QVL+AR+ LGD      I           + 
Sbjct: 113 QVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVARAHLGDSRPDHPI-----------LR 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V MGMGEPL N + V +SL   +D  GLSFS RRIT+ST G    +  +GE     LA
Sbjct: 162 NLVFMGMGEPLLNLNEVMRSLRTLNDEFGLSFSPRRITVSTCGIEKGLRELGESGLAFLA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA + ++R  ++P    + L+ LI A   YP L    R+TFEY++L G+ND    A 
Sbjct: 222 VSLHAPNQEIRKRIMPKAAHWHLDDLITALESYP-LKTRERVTFEYLLLGGVNDGIEHAR 280

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L++++     K+NLI +NP  G  Y     + I+ F + +     ++ IR  +G DI A
Sbjct: 281 ELVRLVSRTKGKLNLIVYNPAEGDPYDAPTPERILAFEQYLWSKNITAIIRKSKGQDIKA 340

Query: 361 ACGQLKS 367
           ACGQLK+
Sbjct: 341 ACGQLKA 347


>gi|157151429|ref|YP_001449957.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|205829902|sp|A8AVZ7|RLMN_STRGC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157076223|gb|ABV10906.1| radical SAM enzyme, Cfr family [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 362

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+ E     G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVSQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR  ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    A  L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LLKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|323701797|ref|ZP_08113468.1| radical SAM enzyme, Cfr family [Desulfotomaculum nigrificans DSM
           574]
 gi|323533333|gb|EGB23201.1| radical SAM enzyme, Cfr family [Desulfotomaculum nigrificans DSM
           574]
          Length = 352

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 131/372 (35%), Positives = 201/372 (54%), Gaps = 29/372 (7%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   K +L  +   E++  + ++G        R  QI +W+  +G+  F  M++IS+E++
Sbjct: 4   NTKSKLNLRDLTLSEMKRLMTELG----EKPFRAIQICQWVLAKGVTSFDQMTNISKELQ 59

Query: 62  HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             L     I   +++  + S  G T K+LL      +     +E V +      + CVS+
Sbjct: 60  AKLADVAYISQTKMLARQQSARGDTIKYLL-----GLADGHAVECVLMKHSYGNSACVST 114

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC +  + LVR+LT  EI  QVL  +   G+                 ++S
Sbjct: 115 QVGCRMGCMFCASTIEGLVRSLTPGEIYDQVLGIQQDTGE-----------------RVS 157

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           +IV+MG GEPL N+DNV K L   +   GL+   R ITLST G VP + ++  +++ + L
Sbjct: 158 HIVIMGSGEPLDNYDNVIKFLENVNADYGLNIGYRHITLSTCGLVPKLKQLAFKKLPITL 217

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +++LRN LVPINR+Y L  LI ACR Y  ++   RITFEY +LK INDS   A
Sbjct: 218 AVSLHAPNDELRNQLVPINRRYSLAELIPACREYTEITGR-RITFEYALLKEINDSEEHA 276

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+ +LKG+   +NLIP NP     +  +  + +  F   I+++G +  +R   G DI 
Sbjct: 277 RQLVNLLKGMLCHVNLIPANPVEEKGFERTPPEKVERFRNIIEKAGLAVTVRRELGTDID 336

Query: 360 AACGQLKSLSKR 371
           AACGQL+   ++
Sbjct: 337 AACGQLRRRFQK 348


>gi|312867068|ref|ZP_07727278.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
           F0405]
 gi|311097197|gb|EFQ55431.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
           F0405]
          Length = 362

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+++ +   + G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQDMIDWAEENG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVSQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFIRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKQGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|85859749|ref|YP_461951.1| radical SAM protein [Syntrophus aciditrophicus SB]
 gi|123752486|sp|Q2LUM5|RLMN_SYNAS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|85722840|gb|ABC77783.1| radical SAM family enzyme [Syntrophus aciditrophicus SB]
          Length = 348

 Score =  421 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 149/372 (40%), Positives = 219/372 (58%), Gaps = 27/372 (7%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            + + ++  M  EE+E  +  +G      + R  QI KW+Y +G + F  M+ +S+ VR 
Sbjct: 2   HMNRINIRDMSLEEIESFISSLG----KEKYRARQIMKWLYSQGAKSFDEMTTLSRAVRD 57

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            LN+   I  PEI   + S DGTRK L R           IE+V IP K   T C+S+QV
Sbjct: 58  QLNEMACITLPEIARVQQSSDGTRKILFRLQDNSF-----IESVLIPGKHNWTACISTQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC+T  Q   RNL   EI  Q+ + +  L + P               +I NI
Sbjct: 113 GCHMGCRFCFTARQGFRRNLKPSEITGQLTMLQFYLPEGP---------------EIKNI 157

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N+ N  K++ I +   GL FS R+ITLSTSG  P I ++G ++ + LAIS
Sbjct: 158 VMMGMGEPLANYRNTLKAIRIITSDYGLGFSTRKITLSTSGITPMIEQLGRDLCINLAIS 217

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+A ++ +R+ L+P+NRKYPL+ L+ ACR+YP +   R +TFEY+++ G+N SP  A  L
Sbjct: 218 LNAPTDSIRSELMPVNRKYPLDRLLQACRNYP-MPGRRMLTFEYILIDGVNSSPAHAEML 276

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LKGI  K+NLI FN +P C +    ++ ++ F + + +  Y++ IR  RG DILAAC
Sbjct: 277 CRLLKGIRCKLNLIRFNEFPDCPFKTPSEETVLAFQQILVKHHYTAIIRASRGRDILAAC 336

Query: 363 GQL--KSLSKRI 372
           GQL  K+L +++
Sbjct: 337 GQLSGKALEEKL 348


>gi|309800021|ref|ZP_07694219.1| radical SAM enzyme, Cfr family [Streptococcus infantis SK1302]
 gi|308116341|gb|EFO53819.1| radical SAM enzyme, Cfr family [Streptococcus infantis SK1302]
          Length = 357

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQGMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLISKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|289167665|ref|YP_003445934.1| hypothetical protein smi_0819 [Streptococcus mitis B6]
 gi|288907232|emb|CBJ22067.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 361

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|313890464|ref|ZP_07824093.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313121166|gb|EFR44276.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 361

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 205/373 (54%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL +  +  G      + R +QIW W+Y + ++ F+ M++IS++   LLN
Sbjct: 2   KPSIYSLTRDELIDWAIANG----QKKFRATQIWDWLYKKRVQSFEEMTNISKDFIALLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  EKFCLNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L + EI  Q++L +    +                 ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDE------------RGQDERVSHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV   L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVMTFLRTINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +PLE L  A  +Y   +N  R+TFEY+ML  +ND    A  L  
Sbjct: 221 APNNELRSSIMRINRSFPLEKLFTAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAD 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDILKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKKDR 352


>gi|315613373|ref|ZP_07888282.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 49296]
 gi|315314608|gb|EFU62651.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 49296]
          Length = 361

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+ +   LN
Sbjct: 2   KPSIYSLTRQAMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  EQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|322375441|ref|ZP_08049954.1| radical SAM enzyme, Cfr family [Streptococcus sp. C300]
 gi|321279704|gb|EFX56744.1| radical SAM enzyme, Cfr family [Streptococcus sp. C300]
          Length = 361

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIEKTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|306825018|ref|ZP_07458361.1| cfr family radical SAM enzyme [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432845|gb|EFM35818.1| cfr family radical SAM enzyme [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 361

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 211/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+ +   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  EQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPRERVMAFYDTLKKNGINCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|322412262|gb|EFY03170.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 360

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 203/373 (54%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + RE+L    +  G      + R +QIW W+Y + ++ F  M++IS++   +L 
Sbjct: 2   KPSIYSLTREDLIAWAIDHG----QKKFRATQIWDWVYKKRVQSFDDMTNISKDFIAILK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  ENFCVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L + EI  Q++L +    +                 ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDE------------RGQDERVSHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV   L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYQNVMSFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INR +PLE L  A  +Y   +N  R+TFEY+ML  +ND    A  L  
Sbjct: 221 APNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAQELAD 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKKDR 352


>gi|325690223|gb|EGD32227.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK115]
          Length = 362

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+ E     G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIATLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR  ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    A  L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDILKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|322376321|ref|ZP_08050814.1| radical SAM enzyme, Cfr family [Streptococcus sp. M334]
 gi|321282128|gb|EFX59135.1| radical SAM enzyme, Cfr family [Streptococcus sp. M334]
          Length = 361

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|294661183|ref|YP_003573058.1| hypothetical protein Aasi_1616 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336333|gb|ACP20930.1| hypothetical protein Aasi_1616 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 339

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 180/345 (52%), Positives = 236/345 (68%), Gaps = 14/345 (4%)

Query: 29  RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88
           +    R  Q+W+W+Y  G + F  M+++    R  L  H+S+   +     IS D T KW
Sbjct: 5   KEPAFRADQVWRWVYQLGAQSFSTMNNVPLLFRETLGLHYSLERTQEHQVLISKDKTIKW 64

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           LL F         E+ETV+IPE++R TLC+SSQVGC+L C FC+TGTQ LVRNL A EI+
Sbjct: 65  LLAFSD-----ANEVETVWIPEQTRSTLCISSQVGCTLNCKFCHTGTQPLVRNLRAGEIV 119

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q+L A+ +L D+P           +  RKI+NIVMMGMGEPL N++ V K++ I     
Sbjct: 120 AQLLHAKDVLQDWPS---------HAPTRKINNIVMMGMGEPLLNYEQVAKAIQIMMHPQ 170

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           GL  S+++ITLSTSG VP I R  EE+GV LAISLHAV+++LRN LVPIN+KYP+  L+ 
Sbjct: 171 GLDISRKKITLSTSGIVPQIKRCAEELGVNLAISLHAVTDELRNHLVPINKKYPINELLQ 230

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           ACR Y  ++  R+ITFEYVMLKG+NDSP DA  L+ ++KGIPAKINLIPFNPWPG E  C
Sbjct: 231 ACRDYASITGCRKITFEYVMLKGVNDSPADAKKLVDLIKGIPAKINLIPFNPWPGTELEC 290

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
           S + +I  F+  I+++GY +P+RTPRG DI+AACGQLKS S +  
Sbjct: 291 STESNIKQFAAIIEKAGYIAPVRTPRGEDIMAACGQLKSASIKAK 335


>gi|319943743|ref|ZP_08018024.1| cfr family radical SAM enzyme [Lautropia mirabilis ATCC 51599]
 gi|319742976|gb|EFV95382.1| cfr family radical SAM enzyme [Lautropia mirabilis ATCC 51599]
          Length = 460

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 150/386 (38%), Positives = 212/386 (54%), Gaps = 19/386 (4%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+G+ R+   +    +G        R  Q+ +W++ RG+ D+  M+D+++  R  L  
Sbjct: 64  VNLLGLDRQGFLDFCGGMG----EKPFRAHQLMRWVHQRGVADWSAMTDLARSFRERLQD 119

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I  P ++ +  + D TRKWL       +G    +E V+IPE  RGTLCVSSQ GC++
Sbjct: 120 KALIQAPSVLKDHTAPDATRKWLF-----DVGAGNAVEAVFIPEARRGTLCVSSQAGCAV 174

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLAR----------SLLGDFPGCEDIEGMVIPSVG 176
            CSFC TG Q   RNL   EIL Q+ LA              G     +  E +      
Sbjct: 175 NCSFCSTGKQGFSRNLNTAEILGQIWLANQLLRQPGAQPRWGGADDMAQLDEDVDDAGAL 234

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           R ISNIV MGMGEPL N++ +  +L    D  G   S+RR+T+STSG VP I R+ E+  
Sbjct: 235 RPISNIVFMGMGEPLLNYNALLPALRALLDDHGYGLSRRRVTVSTSGVVPLIDRLSEDCP 294

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V LA+SLHA ++ LR+ LVP+NRKYPL+ L+ AC+ Y  ++    ITFEYVMLK INDS 
Sbjct: 295 VALAVSLHASNDTLRDQLVPLNRKYPLKELLAACQRYLKVAPRDFITFEYVMLKDINDSV 354

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L  ++  +P K NLIPFNP+P      S  + I  F + + R+G  + +R  RG 
Sbjct: 355 AHARELAALVADVPCKFNLIPFNPFPNSGLSRSSDRTIRQFGDVLLRAGIVTTVRRTRGD 414

Query: 357 DILAACGQLKSLSKRIPKVPRQEMQI 382
           +I AACGQL        ++  + +Q 
Sbjct: 415 EIDAACGQLAGEVVDRTRLRERTVQF 440


>gi|332361790|gb|EGJ39594.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1056]
          Length = 362

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+ E     G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEMIEWAEDQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIATLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR  ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    A  L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|322392191|ref|ZP_08065652.1| cfr family radical SAM enzyme [Streptococcus peroris ATCC 700780]
 gi|321144726|gb|EFX40126.1| cfr family radical SAM enzyme [Streptococcus peroris ATCC 700780]
          Length = 361

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQGMQEWILEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIRAFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVTEHDQYSRSPKERVMAFYDTLKKHGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|328866638|gb|EGG15021.1| putative ribosomal RNA large subunit methyltransferase N
           [Dictyostelium fasciculatum]
          Length = 432

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 175/380 (46%), Positives = 252/380 (66%), Gaps = 22/380 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++LIG+ +EE+E     +G+     + R  Q+WKWIY +G ++   + ++S++ R +L+
Sbjct: 57  KKNLIGLSKEEIETQFETLGLE----KYRAKQVWKWIYNKGTKNIDHIDNLSKKHRDILS 112

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + ++I +  +  + +S DGTRK L+ F         E+ETV+IPE++RGTLC+SSQVGC+
Sbjct: 113 EVYNIDHGVVNKDSLSIDGTRKLLVEF------KGDEVETVFIPERNRGTLCISSQVGCT 166

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
             C+FC+TGTQKLVRNLTA EI+ QV  ARSL+ DF    +          R ++N+V+M
Sbjct: 167 FQCTFCHTGTQKLVRNLTAGEIVSQVFTARSLMHDFGPTTN---------KRLLTNVVLM 217

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
           G GEPL N+ NV K+L I +D  G+S SK +ITLSTSG VP I R+G++   + LAISLH
Sbjct: 218 GQGEPLYNYRNVSKALKILTDGEGISISKSKITLSTSGVVPLIERLGQDFPGIGLAISLH 277

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N  R+ +VPIN+++P+E L+ AC ++       RIT EYVMLKGIND+ +DA NLI+
Sbjct: 278 ASNNKTRSEIVPINQQWPIEELVQACINFTQKYTKDRITIEYVMLKGINDAKQDAYNLIQ 337

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +    P+ INLIPFNPWPG  Y C+    I +F+  ++R G    +R PRG DILAACGQ
Sbjct: 338 LASQFPSLINLIPFNPWPGTIYECTPIDQIESFARILERGGLKVTVRQPRGTDILAACGQ 397

Query: 365 LKSLSKRIPK--VPRQEMQI 382
           L S S++     +P QE ++
Sbjct: 398 LVSSSQKKKGIIIPEQEGEV 417


>gi|218132885|ref|ZP_03461689.1| hypothetical protein BACPEC_00746 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991758|gb|EEC57762.1| hypothetical protein BACPEC_00746 [Bacteroides pectinophilus ATCC
           43243]
          Length = 360

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 113/361 (31%), Positives = 196/361 (54%), Gaps = 29/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            +  M   E+ E ++ +G      + R  QI++W++ + +  +  M+++   +R  L   
Sbjct: 7   DIKSMTPSEVSELIVSLG----DKKFRAKQIYQWMHQKLVASYDEMTNVPAALRQKLAAE 62

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           + +   E V  +IS  DGTRK+L R     +     IE+V +      ++C+SSQVGC +
Sbjct: 63  YPLTVLEPVRVQISQIDGTRKYLFRLSDGNL-----IESVLMKYHHGNSVCISSQVGCRM 117

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +    LVR L   E+L Q+   +  +G+                 ++ N+V+MG
Sbjct: 118 GCRFCASTIDGLVRGLLPSEMLEQIYRIQKDIGE-----------------RVDNVVVMG 160

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
            GEP  NFDN+ + + + ++  GL+ S R +T+ST G VP I  + + +  + LAISLH+
Sbjct: 161 SGEPFDNFDNLLRFIELLNNEEGLNISARNLTVSTCGIVPKIYELADMQPQITLAISLHS 220

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  ++P+  KY ++ ++ ACR+Y   +   RITFEY ++K +ND+   A+ L+ +
Sbjct: 221 PNDELRRSIMPVANKYSIDEIMKACRYYVEKTGR-RITFEYSLVKDVNDTDECAMQLVHL 279

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KGI   +NLIP NP    +Y  + Q  +  F   +++ G ++ +R   G DI  ACGQL
Sbjct: 280 VKGIKCHVNLIPVNPIKERDYKQTAQAGVSHFRSRLEKCGVNATVRREMGRDIDGACGQL 339

Query: 366 K 366
           +
Sbjct: 340 R 340


>gi|307706322|ref|ZP_07643134.1| UPF0063 protein yfgB [Streptococcus mitis SK321]
 gi|307708956|ref|ZP_07645416.1| UPF0063 protein yfgB [Streptococcus mitis SK564]
 gi|307618240|gb|EFN97395.1| UPF0063 protein yfgB [Streptococcus mitis SK321]
 gi|307620292|gb|EFN99408.1| UPF0063 protein yfgB [Streptococcus mitis SK564]
          Length = 361

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|325688196|gb|EGD30215.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK72]
          Length = 362

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+++ E     G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQDMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQNERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR  ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    A  L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|307703606|ref|ZP_07640548.1| UPF0063 protein yfgB [Streptococcus oralis ATCC 35037]
 gi|331266156|ref|YP_004325786.1| Radical SAM superfamily, predicted Fe-S-cluster redox enzyme
           [Streptococcus oralis Uo5]
 gi|307623013|gb|EFO02008.1| UPF0063 protein yfgB [Streptococcus oralis ATCC 35037]
 gi|326682828|emb|CBZ00445.1| Radical SAM superfamily, predicted Fe-S-cluster redox enzyme
           [Streptococcus oralis Uo5]
          Length = 361

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|163815234|ref|ZP_02206611.1| hypothetical protein COPEUT_01394 [Coprococcus eutactus ATCC 27759]
 gi|158449429|gb|EDP26424.1| hypothetical protein COPEUT_01394 [Coprococcus eutactus ATCC 27759]
          Length = 374

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 202/367 (55%), Gaps = 30/367 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L  M  +EL++ +  +G P      R  QI++W +V+     + M+++ + +R L++
Sbjct: 28  KCDLKSMSIDELKDWVQGVGQPA----FRAKQIYQWFHVKLAGSIEEMTNLPKSLRELMD 83

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +   I    +V    S  DGT K+L R     +     IE+V +  K   ++C+SSQVGC
Sbjct: 84  EQ-KIYGVNVVTRLESKEDGTNKFLFRLHDGNV-----IESVLMRYKHGNSVCISSQVGC 137

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    LVRNLTA E+L Q+   + + G+                 +ISN+V+
Sbjct: 138 RMGCRFCASTIGGLVRNLTASEMLSQIYEIQKISGE-----------------RISNVVV 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MG GEPL NFDN+ + + + +D  GL+ S+R IT+S+ G VP I R+ + ++ +  A+SL
Sbjct: 181 MGTGEPLDNFDNLVRFIKMLTDENGLNISQRNITVSSCGLVPEIKRLADLDLTITFALSL 240

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++  R  L+PI  +Y +E ++DACR+Y   +   RITFEY ++KG NDSP  A  L 
Sbjct: 241 HAPNDADRRELMPIANRYSIEEVLDACRYYFDKTGR-RITFEYSLVKGQNDSPEKARELA 299

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ++KG+   +NLIP NP     +  +D   I  F + ++    +  +R   G DI AACG
Sbjct: 300 ALIKGMNCHVNLIPVNPIKERSFERADNTSIENFRKVLESRQITVTVRRSMGRDIDAACG 359

Query: 364 QLKSLSK 370
           QL+   +
Sbjct: 360 QLRRKYE 366


>gi|322388131|ref|ZP_08061736.1| cfr family radical SAM enzyme [Streptococcus infantis ATCC 700779]
 gi|321141038|gb|EFX36538.1| cfr family radical SAM enzyme [Streptococcus infantis ATCC 700779]
          Length = 361

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R  ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRHGMQEWILEQG----EKKFRADQIWEWLYRKRVQTFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  EQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|259047489|ref|ZP_05737890.1| Cfr family radical SAM enzyme [Granulicatella adiacens ATCC 49175]
 gi|259035680|gb|EEW36935.1| Cfr family radical SAM enzyme [Granulicatella adiacens ATCC 49175]
          Length = 371

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 129/379 (34%), Positives = 206/379 (54%), Gaps = 26/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  + GM  E L       G      + R  Q+W W+Y + +  F+ M+++ + +   L 
Sbjct: 15  KPIIYGMPLENLTAWFEAKG----EKKFRAGQLWDWLYRKRVTSFEEMTNLPKALIEELQ 70

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F+        ++ S DGTRK+L       +     IETV +P++   ++CV++QVGC+
Sbjct: 71  EEFTFPVLNERIKQQSTDGTRKFLFELADGLL-----IETVLMPQEYGLSICVTTQVGCN 125

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G     R+L A EI+ QV+  +  L +             S G ++S+IV+M
Sbjct: 126 IGCTFCASGIIAKQRDLVAGEIVAQVMHVQRTLDEV------------SPGDRVSHIVVM 173

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K L + +   GL    R IT+STSG  P I    +E + V LA+SLH
Sbjct: 174 GIGEPFDNYDNVIKFLKVVNSDKGLGIGARHITVSTSGLAPKIREFADEGLQVNLALSLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ND R+ ++ INRKYP+E+++DA   Y   +N  R+TFEY+ML  +NDS   A  L  
Sbjct: 234 APDNDTRSRIMRINRKYPIEVVMDAINEYIAKTNR-RVTFEYIMLDHVNDSVEQAQQLAD 292

Query: 305 IL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +L  K   + +NLIP+N     + Y  S ++ +V F + +K++  +  +R   G DI AA
Sbjct: 293 LLADKKRLSYVNLIPYNKVREHDQYERSGKERVVAFYDVLKKNHINCVVRKEFGHDIEAA 352

Query: 362 CGQLKSLSKRIPKVPRQEM 380
           CGQL+S   +  +  + ++
Sbjct: 353 CGQLRSSQMKRDRAEKTKV 371


>gi|253682293|ref|ZP_04863090.1| radical SAM enzyme, Cfr family [Clostridium botulinum D str. 1873]
 gi|253562005|gb|EES91457.1| radical SAM enzyme, Cfr family [Clostridium botulinum D str. 1873]
          Length = 343

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 133/362 (36%), Positives = 205/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++    EEL+  + + G      + R  QI++WIY +    F  M++IS+  +  L  
Sbjct: 2   KNILDFDLEELKSWMAENG----ESKFRAKQIFEWIYKKSAFSFHEMTNISKASKEKLKN 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F I  P I+ +  S  DGT K+L  +    I     IE+V +  K   ++CVS+Q+GC 
Sbjct: 58  SFYIEIPNIIKKYKSNIDGTEKFLFEYKDGNI-----IESVVMRYKHGNSICVSTQIGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +  + +VRNLT+ EI+ Q+L A+  +G+                 +ISN+V+M
Sbjct: 113 MGCKFCASTVEGVVRNLTSGEIVAQILKAQQEIGE-----------------RISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N+DNV K + + +D   L   +R ITLST G VP I  + +E + + LAISLH
Sbjct: 156 GSGEPLDNYDNVVKFIKLINDDNALKIGQRHITLSTCGIVPKIKELADEKLQITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++++R  ++P+  KY ++ L+DAC++Y  ++N  RITFEY ++ GINDS ++A  L  
Sbjct: 216 APNDEIRKSMMPVANKYNIKELLDACKYYSRITNR-RITFEYALVNGINDSAKNAEELFN 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            LKGI   +NLIP N     +Y  S  K+I  F   + + G  + IR   G DI  ACGQ
Sbjct: 275 QLKGILCHVNLIPVNEIKENDYKRSRAKNIEEFKNILIKYGIETTIRREMGSDINGACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|86158056|ref|YP_464841.1| hypothetical protein Adeh_1631 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|123750314|sp|Q2IIC5|RLMN_ANADE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|85774567|gb|ABC81404.1| 23S rRNA m(2)A-2503 methyltransferase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 372

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 146/378 (38%), Positives = 214/378 (56%), Gaps = 19/378 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  + +E L   +  +G        R  Q+++W+++RG    + M+D+ + +R  L +
Sbjct: 9   PDLRSLPQERLASLIAGLG----EKPFRARQVYRWLHLRGAASLEEMTDVPRALRERLAE 64

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +   E   E+ S DGT KW  R     +     +E+VY+PE  R TLCVS+QVGC++
Sbjct: 65  GTRLTTLERATEQRSADGTIKWTWRTRDGKL-----VESVYLPETDRKTLCVSTQVGCAV 119

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TGT  L RNL   EI+ QV  A   L +    E           R ++N+V MG
Sbjct: 120 GCTFCMTGTMGLARNLEPGEIVDQVHRANRRLIELGEGEGP---------RPLTNLVFMG 170

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+ ++K +L +     G +FS R +T+STSG VP + R+GEE  V LA+SL+A 
Sbjct: 171 MGEPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPVMRRLGEETQVKLAVSLNAT 230

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++  R+ ++PINR+YPL  L+ ACR +P +   RRITFEYVML G+ND+P DA  L ++L
Sbjct: 231 TDAQRDAIMPINRRYPLAELLRACREFP-MKQGRRITFEYVMLGGVNDAPEDAERLARLL 289

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +GIPAK+NLIP+N  PG  +       +  F + +     ++ +R  RG DI AACGQL 
Sbjct: 290 RGIPAKVNLIPYNENPGLGFAAPAPGAVERFRDLLVARNVTAVVRKNRGTDIAAACGQLA 349

Query: 367 SLSKRIPKVPRQEMQITG 384
           +         R    +TG
Sbjct: 350 AEGGPGDPRRRAAAALTG 367


>gi|303239357|ref|ZP_07325885.1| radical SAM enzyme, Cfr family [Acetivibrio cellulolyticus CD2]
 gi|302593143|gb|EFL62863.1| radical SAM enzyme, Cfr family [Acetivibrio cellulolyticus CD2]
          Length = 347

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 120/363 (33%), Positives = 205/363 (56%), Gaps = 30/363 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+ +  EELE   L++G      + R  Q+++W+  +G++D   M+++S+++R  L 
Sbjct: 4   KVDLLNLTIEELENFFLEMG----QQKFRAKQVFQWV-NKGVKDIDEMTNLSKDIRESLR 58

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
               I   E+V++ +S  DGT K+L +     I     +E+V +  +   ++C+SSQVGC
Sbjct: 59  ASAYINKLEVVEKFVSKIDGTTKYLFKLIDGNI-----VESVLMKYEHGFSVCISSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +     +RNLT+ E+L QVL  ++                   G ++ N+V+
Sbjct: 114 KMGCKFCASTGVGFLRNLTSAEMLDQVLTIQN-----------------DAGSRVGNVVV 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISL 243
           MG+GEP  N+DN+ K + + +   G++   R I +ST G VP I ++  E + + L+ISL
Sbjct: 157 MGIGEPFDNYDNLVKFIRLINHKDGMNLGARHIAVSTCGLVPEILKLSKENLPITLSISL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++ R  ++P+N++Y ++ LI+AC+ Y   + +RRITFEY ++ G+ND    A  L 
Sbjct: 217 HATNDEAREKIMPVNKRYSIDKLIEACKIYTE-TTSRRITFEYALIDGVNDLIEYAQQLS 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG+   +NLIP N      +  S ++ I  F E +++ G  + +R   G DI AACG
Sbjct: 276 NLLKGMLCHVNLIPVNSVTNTGFKKSSKERIYKFKEVLEKRGIETTVRRELGADIDAACG 335

Query: 364 QLK 366
           QL+
Sbjct: 336 QLR 338


>gi|39996213|ref|NP_952164.1| ribosomal RNA large subunit methyltransferase N [Geobacter
           sulfurreducens PCA]
 gi|81702805|sp|Q74E53|RLMN_GEOSL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|39982978|gb|AAR34437.1| conserved hypothetical protein TIGR00048 [Geobacter sulfurreducens
           PCA]
 gi|307634805|gb|ADI83948.2| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter
           sulfurreducens KN400]
          Length = 360

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 159/368 (43%), Positives = 215/368 (58%), Gaps = 31/368 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M+ +    + G+  +ELE  LL  G      R R  QI+KW+Y RG   F  M+D+++E+
Sbjct: 1   MDTM--IDIKGLSIDELERFLLGKG----KERYRARQIFKWLYQRGATSFAEMTDLAKEL 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I        +IS DGTRK+L R    C      +E+V IPE+ R TLC+SS
Sbjct: 55  RRDLEETARISTLSPEALEISRDGTRKYLFRLDDGC-----SVESVLIPEEDRNTLCISS 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C FC TGT +L RNLT  EI+ QV   +                       + 
Sbjct: 110 QVGCAMACEFCLTGTFRLTRNLTTAEIVNQVCAVQR-------------------DVPVR 150

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIV MGMGEPL N DNV ++L I     GL FS RRIT+ST+G VP + R+G  + V LA
Sbjct: 151 NIVFMGMGEPLANLDNVIRALQIMLHDDGLQFSTRRITVSTAGLVPEMERLGRSVTVNLA 210

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SL+A +++LR+ ++PINRKYPL +L+DACR +P L   R+IT EYV+L G+ND+  DA 
Sbjct: 211 VSLNATTDELRDRIMPINRKYPLAVLLDACRRFP-LPGRRKITIEYVLLGGVNDTLDDAK 269

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+++L  IP+KINLIPFN   GC +    Q  I  F   +    ++   R+ RG DI A
Sbjct: 270 RLVRLLSDIPSKINLIPFNEHEGCSFRSPSQDAIDRFHRYLLDKHFTVITRSSRGADISA 329

Query: 361 ACGQLKSL 368
           ACGQLK  
Sbjct: 330 ACGQLKGK 337


>gi|167464611|ref|ZP_02329700.1| Radical SAM family enzyme [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384327|ref|ZP_08058025.1| Fe-S-cluster-like AdoMet radical enzyme [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150829|gb|EFX44266.1| Fe-S-cluster-like AdoMet radical enzyme [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 343

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 125/362 (34%), Positives = 205/362 (56%), Gaps = 26/362 (7%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
             +  ++ +  L + G P      R  QI+ W+YV+ + D   MS++S+ +R  +  +F 
Sbjct: 2   YDLTYDDWKTWLKENGEPA----FRADQIFDWLYVKRVTDVNQMSNLSKALREKIKTNFE 57

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
            +  + +  + S DGT K+L     +       IETV +      ++CV++QVGC + C+
Sbjct: 58  FVVLKEIANQRSQDGTVKFLFELSDKN-----AIETVIMKHNYGNSVCVTTQVGCRVGCT 112

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +    L R+L+A EI+ Q++ A+ LL +                 ++S+IV+MG+GE
Sbjct: 113 FCASTLGGLKRDLSAGEIVAQIVKAQKLLDE--------------TDERVSSIVIMGIGE 158

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           P  N++ + K L I  D  GL   +R IT+STSG VPNI R  +E   + LAIS+HA ++
Sbjct: 159 PFENYEAMMKFLKIMIDPKGLHIGQRHITVSTSGIVPNIYRFADEKTQINLAISIHAPND 218

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
            LR+ L+P+NR++P   LI+AC++Y   +  RRITFEY ++ G+ND    A  L ++L+ 
Sbjct: 219 ALRSKLMPVNRRFPFADLIEACKYYTQ-TTGRRITFEYALMGGVNDQAEHAEELAQVLQQ 277

Query: 309 IP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            P   +NLIP N     +Y+ + ++DI  F   ++R+  ++ IR  +G DI AACGQL++
Sbjct: 278 FPMCHVNLIPVNYVMERKYVRTPREDIFNFQRILERNKINATIRREQGSDIAAACGQLRA 337

Query: 368 LS 369
             
Sbjct: 338 KH 339


>gi|331269682|ref|YP_004396174.1| radical SAM enzyme, Cfr family [Clostridium botulinum BKT015925]
 gi|329126232|gb|AEB76177.1| radical SAM enzyme, Cfr family [Clostridium botulinum BKT015925]
          Length = 343

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 137/362 (37%), Positives = 205/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++    EEL+  + + G      + R  QI++WIY + I +F  M++IS+  +  L  
Sbjct: 2   KNILDFNLEELKNWMAENG----ESKFRAKQIFEWIYKKAIFNFDEMTNISKASKEKLKN 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F I  P I+++  S  DGT K+L  +    I     IE+V +  K   ++CVS+Q+GC 
Sbjct: 58  SFYIEIPNIMEKYKSNIDGTEKFLFEYKDGNI-----IESVVMRYKHGNSICVSTQIGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    +VRNLT+ EI  Q+L A+  +G+                 +ISN+V+M
Sbjct: 113 MGCKFCASTVDGVVRNLTSGEIAAQILKAQQEIGE-----------------RISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N+DNV K + + +D   L   +R ITLST G VP I  + +E + + LAISLH
Sbjct: 156 GSGEPLDNYDNVLKFIKLINDDNALKIGQRHITLSTCGIVPKIKELADEKLQITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++D+R  ++P+  KY +  L+DAC++Y  ++N  RITFEY ++ GINDS ++A  L  
Sbjct: 216 APNDDIRKSMMPVANKYNINELLDACKYYSKITNR-RITFEYALVNGINDSAKNAEELFN 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            LKGI   INLIP N     +Y  S  KDI  F   + + G  + IR   G DI  ACGQ
Sbjct: 275 QLKGILCHINLIPVNEIKENDYKRSGAKDIEEFKNILNKYGIETTIRREMGSDINGACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|197302405|ref|ZP_03167461.1| hypothetical protein RUMLAC_01133 [Ruminococcus lactaris ATCC
           29176]
 gi|197298526|gb|EDY33070.1| hypothetical protein RUMLAC_01133 [Ruminococcus lactaris ATCC
           29176]
          Length = 351

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 203/377 (53%), Gaps = 29/377 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +     + L+E +  +G        R  Q+++W++V+   DF  M+++S+ +R  L 
Sbjct: 2   KKDIRAYGYDRLKEEMEALG----EKPFRAKQVYEWLHVKLADDFDEMTNLSKALREKLK 57

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + + I+  ++++ +IS  DGT K+L +     +     +E+V +  K   ++C+SSQ GC
Sbjct: 58  EEYVILPVKMLERQISQIDGTNKFLFQLYDGNV-----VESVLMRYKHGNSVCISSQAGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL++ E+L Q+   + +  +                 ++SN+V+
Sbjct: 113 RMGCAFCASTIGGLQRNLSSSEMLGQIYQIQKITQE-----------------RVSNVVV 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
           MG GEPL N++N    + + +D  GL+ S+R +T+ST G VP I  +  E + + LA+SL
Sbjct: 156 MGTGEPLDNYENFLNFVHLLTDEHGLNISQRNVTVSTCGIVPKILELAKEHLQITLALSL 215

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H  + + R  L+P+  KY L  ++DAC  Y   +   R+TFEY ++ G+ND+  DA  L 
Sbjct: 216 HGSTQEKRKRLMPVANKYHLPEVLDACDTYFRETGR-RVTFEYSLVHGVNDTEEDARELT 274

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LK     +NLIP NP    +++   +K+ + F   +++SG +  IR   G DI  ACG
Sbjct: 275 ALLKPRNCHLNLIPVNPVRERDFVRPSRKNALNFKNKLEKSGINVTIRREMGSDIDGACG 334

Query: 364 QLKSLSKRIPKVPRQEM 380
           QL+    +      +E+
Sbjct: 335 QLRRSYVKADVAEGEEV 351


>gi|297544781|ref|YP_003677083.1| Cfr family radical SAM protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842556|gb|ADH61072.1| radical SAM enzyme, Cfr family [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 342

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 137/368 (37%), Positives = 202/368 (54%), Gaps = 30/368 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  M  EE+EE  + IG      R R  QI+KWIY + I DF  M+DIS+ +R  L + 
Sbjct: 3   NLKNMTLEEMEEFFVNIG----ESRYRAKQIYKWIYGKKITDFDKMTDISKNLRSKLKEI 58

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   ++   ++S  D T K+L     + I     IE V I  +   T CVS+QVGC++
Sbjct: 59  AYISQLKVEARRVSEIDNTVKYLFLLEDKNI-----IEGVAIKYRFGNTACVSTQVGCNM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +     VR+L A E++ QV+   S  G                  KISNIV+MG
Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQVMSIDSDYG------------------KISNIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N++ V K + I ++  GL    R IT+ST G +P I +  +E + V L+ISLHA
Sbjct: 156 SGEPFDNYEEVMKFIKIVNNPYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  L+PIN+ YPLE L+ AC++Y   +  RRITFEY +++G+ND    A  L+ +
Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYIEKT-RRRITFEYSLIEGVNDKKEHAYQLVDL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+   +NLIP N      +  +  + ++ F + I+ +G S  +R   G DI AACGQL
Sbjct: 275 LQGMLCHVNLIPINYVKEIGFKKAANEKVMMFKKIIENAGISCTVRRELGSDIEAACGQL 334

Query: 366 KSLSKRIP 373
           +    +  
Sbjct: 335 RRKYLKER 342


>gi|189426654|ref|YP_001953831.1| ribosomal RNA large subunit methyltransferase N [Geobacter lovleyi
           SZ]
 gi|189422913|gb|ACD97311.1| radical SAM enzyme, Cfr family [Geobacter lovleyi SZ]
          Length = 351

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/374 (38%), Positives = 213/374 (56%), Gaps = 32/374 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L  +    LE+ L   G      R R +QI+KW+Y   +  F  M+++S+ +R  L 
Sbjct: 6   RTDLKNLTLPALEQFLQGQG----KERYRATQIFKWLYQHDVSSFDEMTNVSKALRAELV 61

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I   E    ++  DGTRK+L             +E+V IP++ R TLC+SSQ GC+
Sbjct: 62  RTACISRLEPETVEVGSDGTRKYLFMLED-----GNAVESVIIPDEDRNTLCISSQAGCA 116

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TGT  L RNLT  EI+ Q+L  +                      ++ NIVMM
Sbjct: 117 MQCAFCLTGTFSLTRNLTTAEIVNQILAVQR-------------------DVEVRNIVMM 157

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N DNV  +L I ++  GL  S RR+T+ST G VP + R+G E+ V LA+SL+A
Sbjct: 158 GMGEPLHNLDNVIPALQIMAEDNGLQLSSRRVTVSTCGLVPELERLGREVTVNLAVSLNA 217

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR+ ++P+N+ YP+  L+ A ++YP L   R+IT EYV+L G+ND+P DA  L+++
Sbjct: 218 TTDELRDRIMPVNKAYPIATLLAALKNYP-LPGRRKITIEYVLLGGLNDTPEDAKRLVRL 276

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L  IP KINLIPFNP  G ++    +  +  F + +    ++   R  RG DI AACGQL
Sbjct: 277 LSDIPCKINLIPFNPHEGADFRPPSRAALDAFHKYLLDRHFTVITRDSRGSDISAACGQL 336

Query: 366 KSLSKRIPKVPRQE 379
           K    ++ + P QE
Sbjct: 337 KG---KLDRKPSQE 347


>gi|332522196|ref|ZP_08398448.1| 23S rRNA m2A2503 methyltransferase [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313460|gb|EGJ26445.1| 23S rRNA m2A2503 methyltransferase [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 360

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 204/373 (54%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL +  +  G      R R +QIW W+Y + ++ F+ M++IS++   LLN
Sbjct: 2   KPSIYSLTRDELIDWAIANG----QKRFRATQIWDWLYKKRVQSFEEMTNISKDFISLLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  EQFCLNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L + EI  Q++L +    +                 ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDE------------RGQDERVSHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV   L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVMTFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +PLE L  A  +Y   +N  R+TFEY+ML  +ND    A  L  
Sbjct: 221 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAA 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S +  +  F + +K++G +  +R   G DI AA
Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKARVEAFYDVLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKKDR 352


>gi|297568774|ref|YP_003690118.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2]
 gi|296924689|gb|ADH85499.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2]
          Length = 354

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 154/366 (42%), Positives = 210/366 (57%), Gaps = 19/366 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M+  +K  L  M   EL   +  + +       R  QI+ WI+     DF  M+DI++ V
Sbjct: 1   MDT-EKVDLKNMTLPELTAWVESLDLKP----FRARQIFAWIHRPDFTDFSQMTDIAKHV 55

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R LL +   +   E    + S DGT K+  R           IE+V IPE  R TLCVSS
Sbjct: 56  RSLLAEKAFLSRLEPDKVESSQDGTVKFAFRL-----ADGQLIESVLIPEDDRYTLCVSS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C FC T T    RNL A EI+ QV  A   L   PG    +         +I+
Sbjct: 111 QVGCAMGCRFCLTATMGFKRNLEAAEIVGQVDAALRWLLARPGATGEKT--------RIN 162

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V MGMGEPL NFD++ +++ I  +  G  FS RRIT+ST G VP +  +GE++ V LA
Sbjct: 163 NLVFMGMGEPLLNFDHLLRAIKILMEQRGHDFSGRRITVSTCGIVPKMKELGEQVPVNLA 222

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA  ND+R+ L+PIN+KYPLE L+ ACR YP L   RRI  EYVM+K +NDS   A 
Sbjct: 223 VSLHAADNDIRDQLMPINKKYPLEQLLRACREYP-LPPRRRIMIEYVMIKDLNDSVAQAR 281

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+K L GI  KIN++P+N  P   Y   D++ +  F + ++R+G+++ +R  RG DI A
Sbjct: 282 LLVKKLHGIRCKINILPYNENPDSPYQAPDEETVENFRQILRRAGHTTLLRQSRGADISA 341

Query: 361 ACGQLK 366
           ACGQL 
Sbjct: 342 ACGQLA 347


>gi|323352763|ref|ZP_08087733.1| cfr family radical SAM enzyme [Streptococcus sanguinis VMC66]
 gi|322121799|gb|EFX93545.1| cfr family radical SAM enzyme [Streptococcus sanguinis VMC66]
          Length = 362

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+ E     G      + R SQIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEMIEWAEAQG----EKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIARLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR  ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    A  L +
Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKTGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|306829710|ref|ZP_07462899.1| cfr family radical SAM enzyme [Streptococcus mitis ATCC 6249]
 gi|304428061|gb|EFM31152.1| cfr family radical SAM enzyme [Streptococcus mitis ATCC 6249]
          Length = 361

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+ +   LN
Sbjct: 2   KPSIYSLTRQAMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  EQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDSLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|291560509|emb|CBL39309.1| 23S rRNA m(2)A-2503 methyltransferase [butyrate-producing bacterium
           SSC/2]
          Length = 343

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 195/368 (52%), Gaps = 29/368 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L  M  +E++E +  IG      + R  QI++W +         M+++ ++++  + Q 
Sbjct: 2   DLKSMTLQEMQEYMESIG----EKKFRAKQIYEWFHKHLALSLDEMNNVPKKLKEKIEQT 57

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I   + VD  IS  DGTRK+L       I     IE+V +  K   ++C+SSQ GC +
Sbjct: 58  QEIYGVKPVDCFISKIDGTRKYLFELYDGNI-----IESVLMKYKHGNSVCISSQAGCRM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +    L RNLT  E+L Q+   +                      ++SN+VMMG
Sbjct: 113 GCKFCASTLGGLDRNLTPSEMLSQIYYIQR-----------------DTEERVSNVVMMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
            GEP+ N+DNV + L + +   GL+ S+R IT+ST G VP I  + +  + + LAISLH+
Sbjct: 156 TGEPMDNYDNVLRFLELITSEDGLNISQRNITISTCGIVPKIKELAQKHLQITLAISLHS 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R  L+PI  KY ++ L+DAC +Y   +N  R+TFEY ++ G+ND P  A  L   
Sbjct: 216 PNDEMRRGLMPIAMKYSIDELLDACHYYFKETNR-RMTFEYSLVAGVNDQPVHAEELAGR 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG P  +NLIP NP    ++  S  K ++ F + ++++  +  IR   G DI AACGQL
Sbjct: 275 LKGFPCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRVNVTIRREMGADINAACGQL 334

Query: 366 KSLSKRIP 373
           +    +  
Sbjct: 335 RRKKLQSR 342


>gi|237747707|ref|ZP_04578187.1| ribosomal RNA large subunit methyltransferase N [Oxalobacter
           formigenes OXCC13]
 gi|229379069|gb|EEO29160.1| ribosomal RNA large subunit methyltransferase N [Oxalobacter
           formigenes OXCC13]
          Length = 387

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 149/380 (39%), Positives = 216/380 (56%), Gaps = 19/380 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + +L+G    +L E   K+         R  Q+ +WI+  G+ DF  M+D+++ +R  L 
Sbjct: 5   RTNLLGFSPVQLVEYCQKL----NEKPFRAKQLQRWIHQFGVSDFAEMTDLAKSLRGKLE 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  P+I+ + +S DGTRKWLL      +G    IETV+IPE +RGTLCVS+Q GC+
Sbjct: 61  LCAEVKAPDILKDTVSSDGTRKWLL-----DVGAGNAIETVFIPEDTRGTLCVSTQAGCA 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q   RNLT  EI+ Q+ +A   +    G  D +        R+ISN+VMM
Sbjct: 116 VNCLFCSTGKQGFSRNLTTAEIIGQLWMAEFAVRRSKGLTDAKDE------RQISNVVMM 169

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFD    +L +  D      S+RR+T+STSG VP I R+ +E  V LA+SLHA
Sbjct: 170 GMGEPLFNFDASVSALKLMLDDNAYGLSRRRVTVSTSGVVPMIDRLAKECPVALAVSLHA 229

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LR+ LVP+N+K+PL+ L+ AC+ Y   +    ITFEY ML GIND+   A  L+K+
Sbjct: 230 PNDTLRDHLVPLNKKHPLKELMAACQRYLDYAPRDFITFEYCMLDGINDTDEHARELVKL 289

Query: 306 LKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +K  P     K+NLIPFN         S    + +F++ +  +G  + +R  RG DI AA
Sbjct: 290 VKHGPNPVSCKLNLIPFNSIAMPGLKRSTDARVQSFAKILLDAGIVTTVRKARGEDIEAA 349

Query: 362 CGQLKSLSKRIPKVPRQEMQ 381
           CG L    K   ++  +  +
Sbjct: 350 CGLLAGEIKDRTRIQERMAE 369


>gi|115377093|ref|ZP_01464309.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
 gi|310821316|ref|YP_003953674.1| ribosomal RNA large subunit methyltransferase n 2 [Stigmatella
           aurantiaca DW4/3-1]
 gi|115365932|gb|EAU64951.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
 gi|309394388|gb|ADO71847.1| Ribosomal RNA large subunit methyltransferase N 2 [Stigmatella
           aurantiaca DW4/3-1]
          Length = 381

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 151/372 (40%), Positives = 214/372 (57%), Gaps = 18/372 (4%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
            +  E L   L +          R  Q+++W++ RG+  F  M+D+S+ +R  L +   I
Sbjct: 27  SLTLEGLARFLTEQ---LGERAFRAGQVYRWLHQRGVTSFDEMTDLSKALRQKLKEQAEI 83

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
           +      E++S DGT K+  +           IE+VY+P + R TLCVS+QVGC++ CSF
Sbjct: 84  VPLVKDLEQVSIDGTIKYRFKTRDGRF-----IESVYMPSEDRKTLCVSTQVGCAMKCSF 138

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TGT  L RNLT  EI+ QV      +    G E           R +SN+V MGMGEP
Sbjct: 139 CMTGTLGLKRNLTPGEIVAQVHTVNREVRAREGLETY---------RPLSNLVFMGMGEP 189

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDL 250
           L NF+N+K +LSI     G +FS R IT+ST G VP I R G+E  V LAISL+A +++ 
Sbjct: 190 LHNFENLKTALSILQSQDGPNFSHRHITVSTVGLVPMIERFGQETDVKLAISLNASTDEQ 249

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           RN  +P+NRK+ +E L++ACR +P L   RRITFEYV+L+G NDS  DA  LI++L+GIP
Sbjct: 250 RNQTMPVNRKWNIEALLEACRKFP-LRQGRRITFEYVLLRGFNDSDEDAYRLIELLRGIP 308

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           AK+NLIP+N  PG  +  + ++    F   +     ++ IR  RG DI  ACGQL + S 
Sbjct: 309 AKVNLIPYNENPGLGFHTTGEERAEQFRAILAEGHIAAFIRQNRGRDIAGACGQLANRSG 368

Query: 371 RIPKVPRQEMQI 382
           +      Q  ++
Sbjct: 369 QDAAQSTQAPEL 380


>gi|296876970|ref|ZP_06901014.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
           15912]
 gi|296432005|gb|EFH17808.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
           15912]
          Length = 362

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+++ +   + G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQDMIDWAEENG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVSQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLKFIRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKQGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|322389001|ref|ZP_08062571.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
           903]
 gi|321144306|gb|EFX39714.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
           903]
          Length = 362

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+++ +   + G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQDMIDWAEENG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVSQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLKFIRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKQGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|187932932|ref|YP_001885417.1| radical SAM enzyme, Cfr family [Clostridium botulinum B str. Eklund
           17B]
 gi|205829737|sp|B2THS9|RLMN_CLOBB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|187721085|gb|ACD22306.1| radical SAM enzyme, Cfr family [Clostridium botulinum B str. Eklund
           17B]
          Length = 347

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 129/372 (34%), Positives = 202/372 (54%), Gaps = 30/372 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++    EEL   + +          R  QI  WIY + +R+F  M ++ + +   L +
Sbjct: 2   KNILDYTLEELTLWMKEN----NESSFRAKQIMSWIY-KDVRNFSDMRNMPKSLIAKLEE 56

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  PEI +   S  DGT K+L +F    +     IE+V +  K   ++C+S+QVGC 
Sbjct: 57  NFEIALPEIEEIYKSELDGTEKFLFKFSDGNL-----IESVLMRYKHGNSICISTQVGCR 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +     +RNLT  EIL Q+L+ ++ +G+                 +ISN+V+M
Sbjct: 112 MGCKFCASTIDGRIRNLTTGEILAQILVVQNHIGE-----------------RISNVVLM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           G GEPL N++NV K L I S   GL+  +R ITLST G VP I  + + E+ + LAISLH
Sbjct: 155 GSGEPLDNYENVMKFLDIVSAEYGLNIGQRHITLSTCGIVPKIYELADKELSITLAISLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A S++ R  ++PI  KY ++ +++AC+++   +   RITFEY ++K +NDS  DA  L K
Sbjct: 215 AFSDEKRKEIMPIANKYSIDEILNACKYFVNKTKR-RITFEYSLVKDVNDSKEDARALGK 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+   +NLIP N      +  S ++ I  F+  +   G    +R   G DI AACGQ
Sbjct: 274 LLKGMLCHVNLIPVNEIKERTFKRSSKETIQDFANILSNLGIEVTVRREMGSDINAACGQ 333

Query: 365 LKSLSKRIPKVP 376
           L+    +  +  
Sbjct: 334 LRRSYIKTQETR 345


>gi|322419007|ref|YP_004198230.1| radical SAM enzyme, Cfr family [Geobacter sp. M18]
 gi|320125394|gb|ADW12954.1| radical SAM enzyme, Cfr family [Geobacter sp. M18]
          Length = 344

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 138/370 (37%), Positives = 207/370 (55%), Gaps = 29/370 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  +  +  + LE  +  +G      R R  QI+KW+Y     DF  M+++S+E R +
Sbjct: 1   MEKTDIKNLTLQGLEAFIAGLG----KERFRAKQIFKWLYQMDATDFDEMTNVSKEFRAV 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +   I        + S DGTRK+L R           +E+V IP++ R TLC+SSQVG
Sbjct: 57  LKERAEIGDLSPEAVEASEDGTRKYLFRLKD-----GAAVESVLIPDEGRNTLCISSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC TG+  L RNLT  EI+ QV   +                       ++NIV
Sbjct: 112 CAMKCAFCLTGSFGLSRNLTTAEIVNQVCAVKREH-------------------PVNNIV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N   V  ++ I +D  G   S R++T+STSG VP +A +G    V LA+SL
Sbjct: 153 FMGMGEPLHNLAAVIPAVQILTDPDGFQLSTRKVTVSTSGLVPEMAELGRGCTVNLAVSL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           +A ++++R+ ++PINR+YPL+ L+ AC+ +P  S    IT EYV+++ +NDS  DA  L+
Sbjct: 213 NATTDEVRDRIMPINRRYPLKELLAACKAFPLPSRRW-ITMEYVLIRDLNDSLDDAKRLV 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++  IP+K+NLIPFN   GC +    Q+ I  F + +     +   R+ RG DI AACG
Sbjct: 272 RLISNIPSKVNLIPFNEHDGCSFKSPTQETIDRFHKYLLDKHVTVITRSSRGGDISAACG 331

Query: 364 QLKSLSKRIP 373
           QLK    R+ 
Sbjct: 332 QLKGKLDRMQ 341


>gi|94264318|ref|ZP_01288111.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93455284|gb|EAT05494.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 345

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 154/367 (41%), Positives = 208/367 (56%), Gaps = 22/367 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN   K  L  +   EL   +  + +       R  QI+ W+Y     DF  M+DI++ V
Sbjct: 1   MNN-PKTDLKNLTLPELTAWVETLNLKP----FRARQIFSWLYRPDFSDFAQMTDIAKHV 55

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R LL +  +    E   E+ S DGT K+  R     +     IE+V IPE+ R TLCVSS
Sbjct: 56  RALLAEKATFSRLEAAKEEHSTDGTVKFAFRLSDGHL-----IESVLIPEEDRHTLCVSS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C+FC TGT   +RNLT  E++ QV  A   L                   +++
Sbjct: 111 QVGCAMGCNFCLTGTMGFIRNLTVAEMVGQVDQAAHWLWQRGAGSG-----------RLN 159

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V MGMGEPL NFDN+ K+++I  +  G   S RRIT+ST G VP +  +GE++ V LA
Sbjct: 160 NLVFMGMGEPLLNFDNLIKAINILMEQRGHDLSGRRITVSTCGIVPRMKELGEKVPVNLA 219

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA  +  R  L+P+NR YPL  L+ ACR YP L   RRI  EY +L GINDSP  A 
Sbjct: 220 VSLHAADHATREQLMPVNRTYPLAELLQACRQYP-LPPRRRIMIEYALLAGINDSPAAAR 278

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+K L GI  KIN++PFN  P   Y C D   I  F + ++R+G+++ +RT RG DI A
Sbjct: 279 LLVKQLHGIRCKINILPFNETPAFPYRCPDPATIEAFRQILRRAGHTTLLRTSRGADIAA 338

Query: 361 ACGQLKS 367
           ACGQL +
Sbjct: 339 ACGQLAA 345


>gi|225574500|ref|ZP_03783110.1| hypothetical protein RUMHYD_02577 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038287|gb|EEG48533.1| hypothetical protein RUMHYD_02577 [Blautia hydrogenotrophica DSM
           10507]
          Length = 347

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 118/364 (32%), Positives = 197/364 (54%), Gaps = 29/364 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             +  M  EEL +AL  +G        R  Q+++WI+ +    +  M+++S+ +R  L +
Sbjct: 2   TDIKSMTLEELRQALTGLG----EKPFRAKQLYEWIHRKLAVSYDEMTNLSKHLREKLEK 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            + +   E VD ++S  DGT K+L R     +     IE+V +      ++C+SSQVGC 
Sbjct: 58  EYPLTVLEAVDVQVSKQDGTCKYLFRLEDGNV-----IESVLMRYHHGNSVCISSQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    L RNL + E+L Q+   + L  +                 ++SN+V+M
Sbjct: 113 MGCKFCASTIGGLTRNLRSSEMLDQIYRIQRLSQE-----------------RVSNVVVM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N++N+ + + + +   GL  S+R +T+ST G VP I ++ +E + + LA+SLH
Sbjct: 156 GTGEPLDNYENLLRFIELLTGEDGLHISQRNLTVSTCGLVPKIRQLADEKLQITLALSLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++ R  L+PI  KY ++ ++DACR+Y   +   RITFEY +++G+ND   DA  L  
Sbjct: 216 APNDEKRKELMPIAYKYTMDEVLDACRYYFQKTGR-RITFEYSLVRGVNDFEEDACQLAG 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            ++ I   +NLIP NP     +  S ++ +  F   +++ G +  IR   G DI  ACGQ
Sbjct: 275 QIQDINCHVNLIPVNPVKERSFRQSTRQAVENFKIKLEKCGINVTIRREMGSDIDGACGQ 334

Query: 365 LKSL 368
           L+  
Sbjct: 335 LRKR 338


>gi|153809821|ref|ZP_01962489.1| hypothetical protein RUMOBE_00202 [Ruminococcus obeum ATCC 29174]
 gi|149833999|gb|EDM89079.1| hypothetical protein RUMOBE_00202 [Ruminococcus obeum ATCC 29174]
          Length = 346

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 200/373 (53%), Gaps = 30/373 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             +  M  +EL+E + +IG        R  QI+ W++   +  +  M+++ + ++  L  
Sbjct: 2   TDIKSMTIDELKELMTQIG----EKPFRAKQIYSWLHEHLVTSYDEMANLPKNLKQKLAD 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            + I   E +D +IS  DGTRK+L R     +     IE+V +  K   ++C+SSQ GC 
Sbjct: 58  -YPITALETLDVQISKVDGTRKYLFRLSDGNM-----IESVLMRYKYGNSVCISSQAGCR 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    L RNL   E+L Q+   ++ +G+                 +ISN+V+M
Sbjct: 112 MGCRFCASTIGGLTRNLLPSEMLDQIYRIQTSIGE-----------------RISNVVVM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N+DN+ + + I ++  G+  S+R +T+ST G VP I  + EE + + LA+SLH
Sbjct: 155 GTGEPLDNYDNLLRFIHILTEDGGIHISQRNLTVSTCGLVPKIYELAEEKLQMTLAVSLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++ R  L+PI  KY ++ L+ ACR+Y   +   RITFEY ++ G+NDS  +A  L  
Sbjct: 215 APNDEKRRELMPIANKYSIDELLAACRNYFDKTGR-RITFEYSLVAGVNDSKENAQELAG 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            LKG+   +NLIP NP     ++ S ++ +  F   +++ G +  IR   G DI  ACGQ
Sbjct: 274 RLKGLNCHVNLIPVNPVRERSFVRSTREAVENFKINLEKCGINGTIRREMGSDIDGACGQ 333

Query: 365 LKSLSKRIPKVPR 377
           L+       +  +
Sbjct: 334 LRKRYMEKTESEK 346


>gi|160880620|ref|YP_001559588.1| radical SAM protein [Clostridium phytofermentans ISDg]
 gi|205829644|sp|A9KM95|RLMN_CLOPH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|160429286|gb|ABX42849.1| radical SAM enzyme, Cfr family [Clostridium phytofermentans ISDg]
          Length = 356

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 122/364 (33%), Positives = 200/364 (54%), Gaps = 29/364 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  +  +  EEL+ +L  IG        R  QI++W++V+ +RDF+ M+++S+E+R  L
Sbjct: 6   EKIDIKALTLEELKASLKIIG----EKEFRAKQIYEWLHVKLVRDFEEMTNLSKELRAKL 61

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
              + +I    ++   S  DGT K+L R     +     +E V +      ++C+SSQVG
Sbjct: 62  ASEYELICVNDLERYESKMDGTVKYLFRLSDGNV-----VECVLMKYHHGNSVCISSQVG 116

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +    L RNL   E+L +V   + L G+                 ++SNIV
Sbjct: 117 CRMGCRFCASTLGGLTRNLKTSEMLDEVYQIQRLSGE-----------------RVSNIV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG GEP+ N+DN  K + + S S GL+ S+R IT+ST G VP +  + EE   + LA+S
Sbjct: 160 IMGTGEPMDNYDNFVKFIRMISSSDGLNISQRNITVSTCGIVPKMRALAEEGFAITLALS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +++ R  ++P+   Y L+ +++AC +Y   +   R+++EY ++ G+ND+   A  L
Sbjct: 220 LHAPNDEERAKIMPVANSYQLQDVLNACDYYYEKTGR-RVSYEYSLVDGVNDTAACAKEL 278

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LKG    +NLIP NP    +Y  S   +I  F   ++++  +  IR   G DI AAC
Sbjct: 279 SRLLKGKNCHVNLIPVNPIKERDYKRSTGNNIQNFKNILEKNRINVTIRREMGSDINAAC 338

Query: 363 GQLK 366
           GQL+
Sbjct: 339 GQLR 342


>gi|332366108|gb|EGJ43864.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1059]
          Length = 357

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 31/373 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+E+ E     G      + R +QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLITKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE-----------------RVSHIVVM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 156 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR  ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    A  L +
Sbjct: 216 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 274

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 275 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 334

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 335 CGQLRSNTMKRDR 347


>gi|160939809|ref|ZP_02087156.1| hypothetical protein CLOBOL_04700 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437243|gb|EDP15008.1| hypothetical protein CLOBOL_04700 [Clostridium bolteae ATCC
           BAA-613]
          Length = 362

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 128/374 (34%), Positives = 209/374 (55%), Gaps = 29/374 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +  M  EE+   +  +G        R  Q++ W++V+    F  MS +S  +R  L 
Sbjct: 10  KKDIKSMTLEEVTAQMAALG----EKSFRAKQLYDWMHVKLAEGFDDMSSLSIPLRQKLK 65

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +++S+   ++VDE++S  DGTRK+L       +     IE+V++      ++C+SSQVGC
Sbjct: 66  ENYSLTCLKMVDERVSQVDGTRKYLFGLEDGHV-----IESVWMQYHHGNSVCISSQVGC 120

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    L RNL   E+L Q+   +S+ G+                 ++SN+V+
Sbjct: 121 RMGCRFCASTLDGLERNLRPSEMLEQIYRIQSITGE-----------------RVSNVVV 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG GEP+ N+DNV + L + S   GL+ S+R +T+ST G VP I +  EE + V LA+SL
Sbjct: 164 MGSGEPMDNYDNVIRFLRLVSHEKGLNISQRSLTISTCGIVPGIRKFAEEGLAVTLALSL 223

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++++R  L+P+   Y L+ +++AC +Y   +   R+TFEY +++G+ND+  +A  L 
Sbjct: 224 HAPNDEVRKTLMPVANSYKLQDVLEACHYYYEKTGR-RLTFEYSLVRGVNDNLDEARALA 282

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K++K     +NLIP NP    +Y+ S QK I  F   ++++G +  IR   G DI  ACG
Sbjct: 283 KLIKDQHGHVNLIPVNPIKERDYVQSGQKAIQDFKNLLEKNGINVTIRREMGRDIGGACG 342

Query: 364 QLKSLSKRIPKVPR 377
           QL+   K    VP+
Sbjct: 343 QLRRSYKEASAVPQ 356


>gi|319939639|ref|ZP_08013998.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           anginosus 1_2_62CV]
 gi|319811228|gb|EFW07534.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           anginosus 1_2_62CV]
          Length = 367

 Score =  418 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R++L +     G      + R +QIW+W+Y + ++ F  M++IS+++   L 
Sbjct: 9   KPSIYSLTRQDLIDWTESKG----EKKFRATQIWEWLYRKRVQSFAEMTNISKDLLAKLE 64

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +        + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 65  DEFVVNPLRQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 119

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +               G ++S+IV+M
Sbjct: 120 IGCTFCASGLIKKQRDLNNGEIMSQIMLVQKYFDE------------RGQGERVSHIVVM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K +   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 168 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 228 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 286

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 287 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGINCVVRQEHGTDIDAA 346

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  K
Sbjct: 347 CGQLRSNTMKQDK 359


>gi|307704572|ref|ZP_07641477.1| UPF0063 protein yfgB [Streptococcus mitis SK597]
 gi|307621869|gb|EFO00901.1| UPF0063 protein yfgB [Streptococcus mitis SK597]
          Length = 361

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      +    QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIYSLTRQTMQEWVLEQG----EKKFHADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++TF + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLTFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|295109190|emb|CBL23143.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus obeum A2-162]
          Length = 346

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 201/373 (53%), Gaps = 30/373 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             +  M  EEL+E +++IG        R  QI+ W++   +  +  M++I + ++  L  
Sbjct: 2   TDIKSMNMEELKELMVQIG----EKPFRAKQIYGWLHEHLVTSYDEMANIPKSLKEKLKD 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            + I   E +D + S  DGTRK+L R     +     IE+V +  K   ++C+SSQ GC 
Sbjct: 58  -YPITVLEELDVQTSKVDGTRKYLFRLSDGNM-----IESVLMRYKYGNSVCISSQAGCR 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    L RNL   E+L Q+   ++ +G+                 +ISN+V+M
Sbjct: 112 MGCRFCASTIGGLTRNLLPSEMLDQIYRIQTSIGE-----------------RISNVVVM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N+DN+ + + I ++  G+  S+R +T+ST G VP I  + +E + + LA+SLH
Sbjct: 155 GTGEPLDNYDNLLRFIHILTEDGGIHISQRNLTVSTCGLVPRIYELADEKLQMTLAVSLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++ R  L+PI  KY ++ L+DACR+Y   +   RITFEY ++ G+NDS  +A  L  
Sbjct: 215 APNDEKRRELMPIANKYSVDELLDACRYYFDKTGR-RITFEYSLVAGVNDSKENAQELAG 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            LKG+   +NLIP NP     ++ S ++ +  F   +++ G +  IR   G DI  ACGQ
Sbjct: 274 RLKGLNCHVNLIPVNPVRERSFVRSTRQAVENFKINLEKCGINGTIRREMGSDIDGACGQ 333

Query: 365 LKSLSKRIPKVPR 377
           L+       +  +
Sbjct: 334 LRKRYMEKTESEK 346


>gi|152989809|ref|YP_001355531.1| hypothetical protein NIS_0057 [Nitratiruptor sp. SB155-2]
 gi|205829830|sp|A6Q115|RLMN_NITSB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|151421670|dbj|BAF69174.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 355

 Score =  418 bits (1074), Expect = e-115,   Method: Composition-based stats.
 Identities = 149/377 (39%), Positives = 220/377 (58%), Gaps = 42/377 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++ + +EEL++ +          + R +QI++WIY +G +DF+ MS++ + +R  L +
Sbjct: 2   KNILDLTKEELQQEVT--------PKFRANQIYQWIYQKGAKDFESMSNLPKSMREELKE 53

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
            F+I  P+I++ ++S DG++K+LL            +E+V +P K              R
Sbjct: 54  KFTITPPKILNVEVSKDGSKKYLLGLQD-----GHTVESVLLPMKKEERDEKGNILKEAR 108

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC + C FC T     VRNLT  EI+ QVL  R                  
Sbjct: 109 YTVCVSSQVGCKVGCEFCLTAKGGFVRNLTPGEIVEQVLTIREDNNI------------- 155

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  NIV MGMGEPL N +NV K++ I SD  G+S S RR T+STSG  P I ++GE
Sbjct: 156 -PANRRVNIVYMGMGEPLDNLENVAKAVKIFSDEHGMSISPRRQTISTSGLAPKIKKLGE 214

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV ++LR  L+PIN+ Y +E +I A + +P +   +R+ FEY+M+K +
Sbjct: 215 MNLGVLLAISLHAVDDELRQKLMPINKAYNIESVIQAVKEFP-IDQRKRVMFEYLMIKNL 273

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND  + A  L+K+L GI AK+NLI FNP+PG  +   + KD+  F + +   G    IR 
Sbjct: 274 NDDLKAAKKLVKLLHGIKAKVNLIYFNPYPGSPFQRPEPKDVEAFQKYLLDHGVLCTIRE 333

Query: 353 PRGLDILAACGQLKSLS 369
            +GLDI AACGQLK  S
Sbjct: 334 SKGLDISAACGQLKEKS 350


>gi|218782479|ref|YP_002433797.1| radical SAM enzyme, Cfr family [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763863|gb|ACL06329.1| radical SAM enzyme, Cfr family [Desulfatibacillum alkenivorans
           AK-01]
          Length = 359

 Score =  418 bits (1074), Expect = e-115,   Method: Composition-based stats.
 Identities = 147/370 (39%), Positives = 217/370 (58%), Gaps = 26/370 (7%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N   +  +I    EEL   L       +    R  QI +W+Y R    F  M+++++  R
Sbjct: 3   NSSDQTDIISCTHEELVRWLADH----KLKPYRAFQILQWVYQRQADSFDVMTNLAKRHR 58

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            LL+ HF+I   +I+  + S DG+RK+L +           IETV IPEK   TLCVS+Q
Sbjct: 59  QLLSDHFTIGRLKILQTQDSSDGSRKFLFQ-----CADGASIETVLIPEKGHHTLCVSTQ 113

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C FC T +  L R+L A EI+ Q+   ++ + D                  + N
Sbjct: 114 VGCAMGCKFCCTASMGLTRSLQANEIISQIRDVQATMED---------------PEHLRN 158

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           +V MGMGEPL N+DNVK+++ I +D   GL FS RR+T+ST G VP +A VG++  V LA
Sbjct: 159 LVFMGMGEPLANWDNVKQAMDIITDNDWGLRFSGRRVTISTVGLVPKMAAVGKDTRVKLA 218

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SL+A  N++R+ ++P+N+K+P+E L+ AC+ +P L   RR+TFEYV+LKG+NDSP  A 
Sbjct: 219 VSLNAPDNEIRDQIMPVNKKHPIEELLQACKDFP-LRPGRRVTFEYVLLKGVNDSPAHAR 277

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L K+L   P KINLIP+NP     +   D + +  F + +    Y+  +R  +GLDI A
Sbjct: 278 KLGKLLAHQPCKINLIPYNPHENSPFERPDPEAVDAFYKVLMDKNYTVIVRHSKGLDIKA 337

Query: 361 ACGQLKSLSK 370
           ACGQLK+ ++
Sbjct: 338 ACGQLKAANQ 347


>gi|327441109|dbj|BAK17474.1| predicted Fe-S-cluster redox enzyme [Solibacillus silvestris
           StLB046]
          Length = 382

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 193/366 (52%), Gaps = 25/366 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  +E++E L   G        R +QI++W+Y + ++ F+ MS++ + +R  L 
Sbjct: 36  KPSVYSLRLDEMKEWLTANG----EKAFRAAQIYEWLYEKRVQTFEEMSNLPKALREKLE 91

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F++     + ++ S DGT K+L +           IETV +      ++CV++QVGC 
Sbjct: 92  AEFALTTLSTIIKQESKDGTIKFLFQLQD-----GYSIETVLMRHDYGNSICVTTQVGCR 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L R+L A EI                        +     ++S+IV+M
Sbjct: 147 IGCTFCASTLGGLKRHLMAGEI--------------VEQVVKVQQQLDETEERVSSIVIM 192

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+D +   L I +D  GL+   R IT+STSG VP I    +E + +  A+SLH
Sbjct: 193 GIGEPFDNYDAMMNFLKIMNDDKGLNIGARHITVSTSGIVPKIYEFADEGMQINFAVSLH 252

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A + + R  L+PI + Y LE L++A ++Y   +   R+TFEY ++ G ND+   A+ L K
Sbjct: 253 APNQEARQKLMPIAKAYKLEELMEAVKYYTKKTGR-RVTFEYGLMSGQNDTEEVAMELAK 311

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++K I   +NLIP N  P  +Y+ + +  I  F   +K  G +  IR  +G DI AACGQ
Sbjct: 312 LIKNIKCHVNLIPINYVPERDYIRTSRSKIFAFERTLKEQGINVTIRREQGADIAAACGQ 371

Query: 365 LKSLSK 370
           L++  +
Sbjct: 372 LRAQER 377


>gi|295094726|emb|CBK83817.1| 23S rRNA m(2)A-2503 methyltransferase [Coprococcus sp. ART55/1]
          Length = 358

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 125/376 (33%), Positives = 205/376 (54%), Gaps = 30/376 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +++  L  M  EEL   +   G P      R  QI++W +V+     + M+++ + +R  
Sbjct: 11  IRQPDLKSMNMEELRNWVTGAGQPA----FRAKQIYQWFHVKLADGTEEMTNLPKSLREK 66

Query: 64  LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +++ + I    +V   IS  DGT K+L R     +     IE+V +  K   ++C+SSQV
Sbjct: 67  MDE-YGIYGVSVVTRLISEDDGTNKFLFRLHDGNV-----IESVLMKYKHGNSVCISSQV 120

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    LVRNLTA E+L Q+   + + G+                 ++SN+
Sbjct: 121 GCRMGCRFCASTIGGLVRNLTASEMLSQIYSIQKITGE-----------------RVSNV 163

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL NFDN+ + + + +D  GL+ S+R +T+S+ G VP I R+ +  + +  A+
Sbjct: 164 VVMGTGEPLDNFDNLVRFIEMLTDENGLNISQRNVTVSSCGLVPEIKRLADMGLSITFAL 223

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +++ R  L+PI  +Y +  ++DAC +Y   +   RITFEY ++KG NDSP  A  
Sbjct: 224 SLHAPNDEDRRALMPIANRYSIAEVLDACDYYFDRTGR-RITFEYSLVKGQNDSPEKACE 282

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++++G    +NLIP NP    +Y  +D   I  F   ++R+  ++ +R   G DI AA
Sbjct: 283 LARLIRGRNCHVNLIPVNPIKERDYERADNSAIENFKNILERNQITATVRRSMGRDIDAA 342

Query: 362 CGQLKSLSKRIPKVPR 377
           CGQL+   +   K  +
Sbjct: 343 CGQLRRKYEEENKTDK 358


>gi|225377867|ref|ZP_03755088.1| hypothetical protein ROSEINA2194_03526 [Roseburia inulinivorans DSM
           16841]
 gi|225210305|gb|EEG92659.1| hypothetical protein ROSEINA2194_03526 [Roseburia inulinivorans DSM
           16841]
          Length = 347

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 204/370 (55%), Gaps = 29/370 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M+  +K  +  +  +EL   + ++G        R  QI++W++V+    F  M++IS+ +
Sbjct: 1   MDQKEKTDIRSLNLKELTVFMEQLG----EKAFRAKQIYQWLHVKQAASFDEMTNISKAL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
              L ++  ++  +    +IS  DGTRK+L       +     IE+V++  K   ++C+S
Sbjct: 57  IEKLKENSHLVSIKQEAVQISKIDGTRKYLFLLDDGNV-----IESVFMRYKHGNSVCIS 111

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC + C FC +    LVR LT  E+L Q+       G+                 ++
Sbjct: 112 SQVGCRMGCRFCASTLDGLVRGLTPSEMLDQIYQIGRDTGE-----------------RV 154

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           SN+V+MG GEP+ NFDN+ K + + +D  GL+ S+R +T+ST G VP +  + ++ + + 
Sbjct: 155 SNVVVMGTGEPMDNFDNLLKFIELLTDENGLNISQRNVTVSTCGIVPRMRELADKKLQIT 214

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA + + R  L+P+  KY +  +IDAC++Y   +   R+TFEY ++ G+ND+  D
Sbjct: 215 LALSLHASTQEKRLELMPVANKYEIHEVIDACKYYFEQTGR-RVTFEYSLVGGVNDTDED 273

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
             NL +++KGI   +NLIP NP    +Y+  D +    F   ++++G ++ IR   G DI
Sbjct: 274 VRNLCRLIKGINCHVNLIPVNPIKERDYVQPDVRVTTEFKNKLEKNGINATIRREMGRDI 333

Query: 359 LAACGQLKSL 368
             ACGQL+  
Sbjct: 334 DGACGQLRKR 343


>gi|331091583|ref|ZP_08340419.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330403610|gb|EGG83166.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 347

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 202/374 (54%), Gaps = 29/374 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+ +     EEL++ L  IG        R+ QI+ W++ +    F+ M+++S+ +R  
Sbjct: 1   MEKKDIRSYTLEELKKELESIG----EKPFRSKQIYSWLHEKLADSFEEMTNLSKALREK 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L + + I    +V+ ++S  DGT K+L       +     +E+V +  K   ++C+SSQV
Sbjct: 57  LEKDYEIYPVTMVERQVSKLDGTNKFLFALRDNHV-----VESVLMRYKHGNSVCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L RNLT  E+L Q+   + + G+                 ++SNI
Sbjct: 112 GCRMGCRFCASTLDGLARNLTPSEMLGQIYQIQKITGE-----------------RVSNI 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL N++N  + + + SD  GL  S+R IT+ST G VPN+ R+ EE   + LA+
Sbjct: 155 VIMGTGEPLDNYENFVRFIKLISDENGLHVSQRNITVSTCGIVPNMKRLAEEKFQITLAL 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH  + + R  L+P+  KY L+ +++AC +Y   +   RITFEY +++G+ND   DA  
Sbjct: 215 SLHGSTQEKRRELMPVANKYELKEVLEACDNYFDRTGR-RITFEYSLVQGVNDREEDAGE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           LI ILK     +NLIP NP     +    +++   F   +++SG +  IR   G DI  A
Sbjct: 274 LISILKPRNCHLNLIPVNPIKERNFEKPTRQNAEKFKNKLEKSGINVTIRREMGSDIDGA 333

Query: 362 CGQLKSLSKRIPKV 375
           CGQL+       K+
Sbjct: 334 CGQLRRRYSEKSKI 347


>gi|315640014|ref|ZP_07895140.1| cfr family radical SAM enzyme [Enterococcus italicus DSM 15952]
 gi|315484223|gb|EFU74693.1| cfr family radical SAM enzyme [Enterococcus italicus DSM 15952]
          Length = 359

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 139/376 (36%), Positives = 219/376 (58%), Gaps = 28/376 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +   EL + +L+ G      + R +Q+W+W+Y + ++ F  M+++S+     L+
Sbjct: 8   KASIYELPLNELTDWVLEQG----EKKFRATQLWEWLYQKRVQSFTQMTNLSKGFIEKLD 63

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I     V  + + DGT K+L + P   +     IETV + ++   ++CV++QVGC+
Sbjct: 64  ETFIINPLHQVVVQEAQDGTVKYLFQLPDNHM-----IETVMMTQEYGLSVCVTTQVGCN 118

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+LTA EI+ Q++L +  L D             + G ++S+IV+M
Sbjct: 119 IGCTFCASGILKKQRDLTAGEIVAQIMLVQHYLDD------------KNEGSRVSHIVVM 166

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV   L+I +D+ GL+   R IT+STSG VP I    E  + V LAISLH
Sbjct: 167 GIGEPFDNYQNVMNFLTIVNDAKGLAIGARHITVSTSGLVPKIREFAENGLQVNLAISLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +ND+R  ++ INR +P+E L+DA  +Y   +N  RITFEY+ML  +ND    A  L  
Sbjct: 227 APNNDVRTSIMRINRTFPIEKLMDAVDYYLEKTNR-RITFEYIMLSHVNDRVEHAQQLAD 285

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK       +NLIP+NP    + Y  S + D++ F + +K++G +  IR   G DI AA
Sbjct: 286 LLKDKKKLTYVNLIPYNPVSEHDQYARSSRNDVMKFYDVLKKNGINCVIRKEYGTDIDAA 345

Query: 362 CGQLKSLSKRIPKVPR 377
           CGQL+  SK++ +V R
Sbjct: 346 CGQLR--SKQMKQVAR 359


>gi|332653341|ref|ZP_08419086.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16]
 gi|332518487|gb|EGJ48090.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16]
          Length = 352

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 132/369 (35%), Positives = 197/369 (53%), Gaps = 32/369 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  EEL   L   G P      R  QI++WIY RG+  F  M+D+S+ +R  L +   + 
Sbjct: 1   MTLEELTAWLKSQGEPG----FRAKQIFRWIY-RGVTSFDEMTDLSKSLREKLKETCFLT 55

Query: 72  YPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
            P++  +++S  DGT K+L        G    IETV +  K   T+CVSSQVGC + C+F
Sbjct: 56  VPKVARKQVSQLDGTIKYLWEL-----GDGNCIETVLMRYKHGNTVCVSSQVGCRMGCAF 110

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +     VRNLT  E++ QVL  +                    G  ISNIV+MG+GEP
Sbjct: 111 CASTLAGKVRNLTPAEMVDQVLFTQ-----------------LDSGAPISNIVLMGIGEP 153

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
           L N+D V K L++ +   GL+   R I+LST G V  I ++ +  + + L++SLHA  ++
Sbjct: 154 LDNYDTVMKFLTLVNHPEGLNIGMRHISLSTCGLVDQIDKLAQRGLQLTLSVSLHAPDDE 213

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R+ ++P+NR   +E L+D CR Y   +  RRI++EY M+ G+NDS R A  L  +LKG+
Sbjct: 214 TRSKIMPVNRAVGVERLMDTCRRYFE-TTGRRISYEYAMIDGVNDSDRQADLLAGLLKGM 272

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           P  +NLIP N         S  + +  F + ++  G +  +R   G DI A+CGQL+  +
Sbjct: 273 PGHVNLIPLNDVEESPLKPS--RRVAAFQKRLESHGVTVTVRRRLGSDIDASCGQLRRKA 330

Query: 370 KRIPKVPRQ 378
                  R+
Sbjct: 331 MGEQARERK 339


>gi|260584540|ref|ZP_05852286.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633]
 gi|260157563|gb|EEW92633.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633]
          Length = 375

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 211/381 (55%), Gaps = 26/381 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  + G   E+L     + G      + R  Q+W W+Y + +  F+ M+++S+++   LN
Sbjct: 15  KPIIYGYPYEDLVAWFEEHG----EKKFRAGQLWDWLYRKRVTSFEEMTNLSKDLIAKLN 70

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F+        ++ S DGTRK+L       +     IETV +P++   ++CV++QVGC+
Sbjct: 71  ETFTFPVLNEKIKQQSTDGTRKFLFELADGLL-----IETVLMPQEYGLSICVTTQVGCN 125

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G     R+L A EI+ QV+  +  L +             + G ++S+IV+M
Sbjct: 126 IGCTFCASGIIAKQRDLVAGEIVAQVMHVQRTLDEV------------APGDRVSHIVVM 173

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+DNV K L + +   GL+   R IT+STSG  P I    +E + V LA+SLH
Sbjct: 174 GIGEPFDNYDNVIKFLKVVNSDTGLAIGARHITVSTSGLAPKILDFAKEGLQVNLALSLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ND R+ ++ INRKYP+E++++A   Y   +N  R+TFEY+ML  +NDS   A  L  
Sbjct: 234 APDNDTRSKIMRINRKYPIEVVMEAINEYIRTTNR-RVTFEYIMLDHVNDSVEQAQQLAD 292

Query: 305 IL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +L  K   + +NLIP+N     + Y  S +  +V F + +K++  +  +R   G DI AA
Sbjct: 293 LLADKKRLSYVNLIPYNKVREHDQYERSSKDRVVAFYDVLKKNHINCVVRKEFGHDIEAA 352

Query: 362 CGQLKSLSKRIPKVPRQEMQI 382
           CGQL+S   +  +  +++ + 
Sbjct: 353 CGQLRSSQMKRDRDRKRKSEE 373


>gi|182420424|ref|ZP_02951644.1| radical SAM enzyme, Cfr family [Clostridium butyricum 5521]
 gi|237668483|ref|ZP_04528467.1| radical SAM enzyme, Cfr family [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182375710|gb|EDT73310.1| radical SAM enzyme, Cfr family [Clostridium butyricum 5521]
 gi|237656831|gb|EEP54387.1| radical SAM enzyme, Cfr family [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 347

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 141/361 (39%), Positives = 205/361 (56%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+    +EL+  + + G        R  QI  WIY +G+ DF+GM +I + + + L ++
Sbjct: 3   NLLDYTLDELKVWMSENGESA----FRGKQILSWIY-KGVMDFKGMKNIPKSLINKLEEN 57

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F+I  PEIV+   S  DGT K+LL F    +     IE+V +  K   ++C+S+QVGC +
Sbjct: 58  FTITMPEIVEVYKSELDGTEKFLLGFSDGNL-----IESVLMRYKHGNSICISTQVGCRM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +  +  VRNLT  EIL +V+  ++ +G+                 +ISNIV+MG
Sbjct: 113 GCKFCASTIEGRVRNLTTGEILSEVIAVQNYIGE-----------------RISNIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
            GEPL N+DNV K L I S   GL+  +R ITLST G VP I  + + E+ + LAISLHA
Sbjct: 156 SGEPLDNYDNVVKFLEIVSADYGLNIGQRHITLSTCGIVPKIYELADKELSITLAISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            S++ R  ++PI  KY +  L++ACR+Y   +   RITFEY ++K +ND   DA  L K+
Sbjct: 216 FSDEKRKEIMPIANKYTISELLEACRYYLNKTKR-RITFEYALVKDVNDGMEDAKALGKL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L G+   +NLIP N      +  S +K I  FSE ++ +G     R   G DI AACGQL
Sbjct: 275 LSGMLCHVNLIPVNEIKENSFKRSSKKAIDDFSEILRNNGIEVTTRREMGSDINAACGQL 334

Query: 366 K 366
           +
Sbjct: 335 R 335


>gi|218886526|ref|YP_002435847.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|254807169|sp|B8DRU2|RLMN_DESVM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|218757480|gb|ACL08379.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 367

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 139/367 (37%), Positives = 202/367 (55%), Gaps = 27/367 (7%)

Query: 7   ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
             ++ +  +ELE  +   +G P    R R  Q+W+W++ +  R F  M+++S+  R  L 
Sbjct: 2   IDILNLTYDELEAWMTGTLGEP----RFRARQVWQWLWQKNARSFDAMTNVSKATRARLA 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120
           +   I +PE+   K S DGT K+LL      +     +ETV IP +S     R T C+S 
Sbjct: 58  EAARITWPEVRTVKTSSDGTVKFLLALADGAL-----VETVLIPSESREGKVRMTQCLSC 112

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C+FC TG+    RN+T  EIL QVL+AR  LGD      I           + 
Sbjct: 113 QVGCAMGCTFCSTGSMGFERNMTMAEILGQVLVAREHLGDDRPDHPI-----------VR 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V MGMGEPL N + V +SL   +D  GL FS RRIT+ST G    +  +GE     LA
Sbjct: 162 NLVFMGMGEPLLNLNEVMRSLRTLNDEFGLCFSPRRITVSTCGIEKGLRELGESGLAFLA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA + ++R  ++P   ++ L+ L+ A   YP L    RITFEY++L G+NDS   A 
Sbjct: 222 VSLHAPNQEVRARIMPRAARWTLDDLMAALESYP-LKTRERITFEYLLLGGVNDSIDHAR 280

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L++++    AK+NLI +NP  G  Y    Q  I+ F + +     ++ IR  +G DI A
Sbjct: 281 ELVRLVSRTKAKLNLIVYNPAEGLPYEAPSQARILAFEQYLWSKNVTAIIRKSKGQDIKA 340

Query: 361 ACGQLKS 367
           ACGQLK+
Sbjct: 341 ACGQLKA 347


>gi|146321533|ref|YP_001201244.1| ribosomal RNA large subunit methyltransferase N [Streptococcus suis
           98HAH33]
 gi|253752360|ref|YP_003025501.1| radical SAM superfamily protein [Streptococcus suis SC84]
 gi|253754186|ref|YP_003027327.1| radical SAM superfamily protein [Streptococcus suis P1/7]
 gi|253756120|ref|YP_003029260.1| radical SAM superfamily protein [Streptococcus suis BM407]
 gi|205829908|sp|A4W3A5|RLMN_STRS2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145692339|gb|ABP92844.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis 98HAH33]
 gi|251816649|emb|CAZ52290.1| radical SAM superfamily protein [Streptococcus suis SC84]
 gi|251818584|emb|CAZ56418.1| radical SAM superfamily protein [Streptococcus suis BM407]
 gi|251820432|emb|CAR47102.1| radical SAM superfamily protein [Streptococcus suis P1/7]
 gi|292558962|gb|ADE31963.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis GZ1]
 gi|319758764|gb|ADV70706.1| Fe-S-cluster redox protein [Streptococcus suis JS14]
          Length = 370

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 211/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+    +  L + +L+ G      + R +QIW+W+Y   ++ F  M+++ + +   L 
Sbjct: 2   KPSIYAFSQANLVDWILENG----EKKFRATQIWEWLYRSRVQSFAEMTNLPKSLIEKLE 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  EHFVVNPLKQRIVQESKDGTIKYLFELPDGML-----IETVLMHQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G     R+LT+ EI+ Q++L +  L +             +   ++S+IV+M
Sbjct: 113 IGCTFCASGLIPKQRDLTSGEIVAQIMLVQKYLDE------------RNQNERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEPL N+DNV   L + +D  GL+   R IT+STSG  P I     E + V LA+SLH
Sbjct: 161 GIGEPLDNYDNVMTFLRVVNDDKGLAIGARHITVSTSGLAPKIREFAREGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INRK+P+E+L +A   Y  ++N  R+TFEY+ML  +ND    A  L  
Sbjct: 221 APNNDLRSSIMRINRKFPIEVLFEAIEDYIKVTNR-RVTFEYIMLNEVNDGVEQAQELAD 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + INLIP+NP    + Y  S ++  + F + +K++G +  +R   G DI AA
Sbjct: 280 LTKNIRKLSYINLIPYNPVSEHDQYSRSTKERTLAFFDVLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTLKKDR 352


>gi|188590485|ref|YP_001920564.1| radical SAM enzyme, Cfr family [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251777897|ref|ZP_04820817.1| radical SAM enzyme, Cfr family [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|205829736|sp|B2V4B5|RLMN_CLOBA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|188500766|gb|ACD53902.1| radical SAM enzyme, Cfr family [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243082212|gb|EES48102.1| radical SAM enzyme, Cfr family [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 347

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 127/372 (34%), Positives = 202/372 (54%), Gaps = 30/372 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++    EEL   + +          R  QI  WIY + +R+F  M ++ + +   L +
Sbjct: 2   KNILDYTLEELTLWMKEN----NESSFRAKQIMSWIY-KDVRNFSDMRNMPKSLIAKLEE 56

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  PEI +   S  DGT K+L +F    +     IE+V +  K   ++C+S+Q+GC 
Sbjct: 57  NFEISLPEIEEIYKSELDGTEKFLFKFSDGNL-----IESVLMRYKHGNSICISTQIGCR 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +     +RNLT  EIL Q+L+ ++ +G+                 +ISN+V+M
Sbjct: 112 MGCKFCASTIDGRIRNLTTGEILSQILVVQNYIGE-----------------RISNVVLM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           G GEPL N++NV K L + S   GL+  +R ITLST G VP I  + + E+ + LAISLH
Sbjct: 155 GSGEPLDNYENVMKFLEVVSAEYGLNIGQRHITLSTCGIVPKIYELADKELSITLAISLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A S++ R  ++PI  KY ++ +++AC+++   +   RITFEY ++K +NDS  DA  L K
Sbjct: 215 AFSDEKRKEIMPIANKYSIDEILNACKYFINKTKR-RITFEYSLVKDVNDSKEDARALGK 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+   +NLIP N      +  S ++ I  F+  +   G    +R   G DI AACGQ
Sbjct: 274 LLKGMLCHVNLIPVNEIKERTFKRSSKETIQDFANILSNLGIEVTVRREMGSDINAACGQ 333

Query: 365 LKSLSKRIPKVP 376
           L+    +  +  
Sbjct: 334 LRRSYIKTQETR 345


>gi|166032715|ref|ZP_02235544.1| hypothetical protein DORFOR_02430 [Dorea formicigenerans ATCC
           27755]
 gi|166027072|gb|EDR45829.1| hypothetical protein DORFOR_02430 [Dorea formicigenerans ATCC
           27755]
          Length = 356

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 197/378 (52%), Gaps = 29/378 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+ ++    +EL++ +  IG        R  QI+ W++ +   +F  M+++S+ +R  
Sbjct: 1   MEKKDIVSYNYDELQDEIKSIG----EKPFRAKQIYAWLHEKLAEEFDEMTNLSKALREK 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L+Q + I   ++V  +IS  D T K+L             IE+V +      ++C+SSQV
Sbjct: 57  LDQAYEIRKVKVVAHQISKVDPTEKFLFELED-----GNRIESVLMKYNYGNSVCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L RNLT  E+L Q+   + + G+                 ++SN+
Sbjct: 112 GCRMGCRFCASTLDGLERNLTTSEMLRQIYQIQKMTGE-----------------RVSNV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V+MG GEPL N+DN  K + + SD  GL+ S+R IT ST G VPNI R+  E + + LA+
Sbjct: 155 VVMGTGEPLDNYDNFVKFIHMLSDEHGLNISQRSITASTCGIVPNIHRLAGEGLQITLAL 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH  S + R  L+PI  KY L  +++AC  Y   +   R+TFEY ++  +ND P D   
Sbjct: 215 SLHGSSQEKRKKLMPIANKYELSEVLEACDDYYKQTGR-RVTFEYSLVADVNDGPDDVKE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  ILK     +NLIP NP     +   D K  + F   ++++G +  IR  RG DI  A
Sbjct: 274 LTGILKHRNCHLNLIPVNPIKERNFKKPDSKKAMEFQNKLEKNGINVTIRRERGSDIDGA 333

Query: 362 CGQLKSLSKRIPKVPRQE 379
           CGQL+     + +    E
Sbjct: 334 CGQLRRRYGAVKEERPDE 351


>gi|94268941|ref|ZP_01291330.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93451405|gb|EAT02257.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 345

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 153/367 (41%), Positives = 207/367 (56%), Gaps = 22/367 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN   K  L  +   EL   +  + +       R  QI+ W+Y     DF  M+DI++ V
Sbjct: 1   MNN-PKTDLKNLTLPELTAWVETLNLKP----FRARQIFSWLYRPDFSDFAQMTDIAKHV 55

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R LL +  +        E+ S DGT K+  R     +     IE+V IPE+ R TLCVSS
Sbjct: 56  RALLAEKATFSRLAAAKEEHSTDGTVKFAFRLSDGHL-----IESVLIPEEDRHTLCVSS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C+FC TGT   +RNLT  E++ QV  A   L                   +++
Sbjct: 111 QVGCAMGCNFCLTGTMGFIRNLTVAEMVGQVDQAAHWLWQRGARSG-----------RLN 159

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V MGMGEPL NFDN+ K+++I  +  G   S RRIT+ST G VP +  +GE++ V LA
Sbjct: 160 NLVFMGMGEPLLNFDNLIKAINILMEQRGHDLSGRRITVSTCGIVPRMKELGEKVPVNLA 219

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA  +  R  L+P+NR YPL  L+ ACR YP L   RRI  EY +L GINDSP  A 
Sbjct: 220 VSLHAADHATREQLMPVNRTYPLAELLQACRQYP-LPPRRRIMIEYALLAGINDSPAAAR 278

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+K L GI  KIN++PFN  P   Y C D   I  F + ++R+G+++ +RT RG DI A
Sbjct: 279 LLVKQLHGIRCKINILPFNETPAFPYRCPDPATIEAFRQILRRAGHTTLLRTSRGADIAA 338

Query: 361 ACGQLKS 367
           ACGQL +
Sbjct: 339 ACGQLAA 345


>gi|332686368|ref|YP_004456142.1| ribosomal RNA large subunit methyltransferase N [Melissococcus
           plutonius ATCC 35311]
 gi|332370377|dbj|BAK21333.1| ribosomal RNA large subunit methyltransferase N [Melissococcus
           plutonius ATCC 35311]
          Length = 357

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 125/372 (33%), Positives = 216/372 (58%), Gaps = 26/372 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           + ++K+++ G+ +E L    L+ G      + R +Q+W+W+Y++ +  F+ M+++S+ + 
Sbjct: 4   DIMQKQTIYGLTKEALVNWFLENG----EKKFRANQVWEWLYIKRVESFEDMTNLSKTLI 59

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            LL+QHF I        + + DGT K+L   P + +     IETV + ++   ++CV++Q
Sbjct: 60  SLLDQHFVIQVLRQTIIQEAKDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQ 114

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C+FC +G  K  RNLTA EI+ Q+++ +                   +G ++S+
Sbjct: 115 VGCNMGCTFCASGLLKKNRNLTAGEIVAQIMMVQRYFDQ------------RKLGERVSH 162

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           +V+MG+GEP  N++ + + + I +D  GL+   R +T+ST G VP I +  +  + V LA
Sbjct: 163 VVVMGIGEPFDNYEQLMQFIQIINDEKGLAIGARHLTVSTCGLVPQIKKFAQTGLQVNLA 222

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA +N +R+ ++ IN  +P+E L+     Y   +N  R+TFEY+ML+ +ND P  A 
Sbjct: 223 ISLHASNNQIRSSIMRINHTFPIEKLMQTIDEYIEQTNR-RVTFEYIMLQKVNDYPEHAQ 281

Query: 301 NLIKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L  +LK     A +NLIP+NP    + Y  S++  ++ F + +K++G +  IR   G D
Sbjct: 282 ELADLLKDKKKLAYVNLIPYNPVNEHDQYCRSEKASVLKFYDILKKNGINCVIRKEHGTD 341

Query: 358 ILAACGQLKSLS 369
           I AACGQL+S  
Sbjct: 342 IDAACGQLRSKQ 353


>gi|317472521|ref|ZP_07931841.1| cfr family radical SAM enzyme [Anaerostipes sp. 3_2_56FAA]
 gi|316899998|gb|EFV21992.1| cfr family radical SAM enzyme [Anaerostipes sp. 3_2_56FAA]
          Length = 354

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 207/377 (54%), Gaps = 31/377 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  M  EELE A+ ++G      + R  QI++W + R       M+++ + ++  L +
Sbjct: 2   RDLKSMTLEELELAVKELG----EKKFRAKQIFEWFHKRLASSLDEMNNLPKNLKEKLQE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +     + V+  +S  DGTRK+L +     +     IE+V +  K   ++C+SSQ GC 
Sbjct: 58  KYEAAELKEVETYVSRIDGTRKYLFQLNDGNM-----IESVLMKYKHGNSVCISSQAGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    L RNL   E+L Q+   +   G+                 ++SN+V+M
Sbjct: 113 MGCRFCASTLGGLDRNLLPSEMLGQIYYIQKDTGE-----------------RVSNVVVM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N++N+ + + + +D  GL+ S+R +T+ST G VP I  + +E + + LAISLH
Sbjct: 156 GTGEPLDNYENLLRFIRLLTDEKGLNLSQRNLTVSTCGLVPKIRELADEKLQMTLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++++R  L+P+  +Y +E L+ AC++Y   +   RITFEY ++  +NDSP++A  L +
Sbjct: 216 ASNDEMRKSLMPVANQYSMEDLLAACKYYFDRTGR-RITFEYSLVAEVNDSPQNAKELCR 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            L G P  +NLIP NP    ++  S  + +  F   ++++  +  IR   G DI AACGQ
Sbjct: 275 FLGGFPCHVNLIPVNPIKERDFRQSMPEFVNDFKNILEKNRVNVTIRREMGRDINAACGQ 334

Query: 365 LKSLSKRIPKVPRQEMQ 381
           L+   K++  V +QE++
Sbjct: 335 LR--RKKLNSVEKQEIR 349


>gi|148263644|ref|YP_001230350.1| ribosomal RNA large subunit methyltransferase N [Geobacter
           uraniireducens Rf4]
 gi|205829769|sp|A5GEC2|RLMN_GEOUR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146397144|gb|ABQ25777.1| 23S rRNA m(2)A-2503 methyltransferase [Geobacter uraniireducens
           Rf4]
          Length = 343

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 144/371 (38%), Positives = 210/371 (56%), Gaps = 29/371 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  +     +ELE  +   G      R R  QI+KW+Y +  R+F  M+++S++ R  
Sbjct: 1   MEKVDIKNFTLQELEAYIAGQG----KERFRAKQIFKWLYQQDAREFADMTNLSKDFRQE 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +   I   +    + S DGT+K+L R           +E+V IP++ R TLC+SSQVG
Sbjct: 57  LEKTAWISNLDAEAVEASADGTKKYLFRL-----ADGNAVESVLIPDEDRTTLCISSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TGT KL RNLT  EI+ QV   +                       + NIV
Sbjct: 112 CAMGCEFCLTGTFKLTRNLTTAEIVNQVCAVKRQ-------------------EPVRNIV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N  NV  +L I +D  G  FS R++T+STSG VP +A +G  + V LA+SL
Sbjct: 153 FMGMGEPLANLKNVVGALKILTDPDGFQFSTRKVTVSTSGLVPEMAELGASVTVNLAVSL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           +A ++++R+ ++PINR+YPL+ L+ AC+ +P  S    IT EYVM++G+NDS  DA  L+
Sbjct: 213 NATTDEVRDRIMPINRRYPLKELLAACKAFPLPSRRW-ITIEYVMIRGVNDSLDDAKRLV 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++  IP+K+NLIPFN   GC +    Q  I  F + +     +   R+ RG DI AACG
Sbjct: 272 RLISNIPSKVNLIPFNEHDGCTFQAPTQDSIDKFHKFLLDKHVTVITRSSRGSDISAACG 331

Query: 364 QLKSLSKRIPK 374
           QLK    +  K
Sbjct: 332 QLKGRLDKAVK 342


>gi|313899948|ref|ZP_07833450.1| 23S rRNA m2A2503 methyltransferase [Clostridium sp. HGF2]
 gi|312955256|gb|EFR36922.1| 23S rRNA m2A2503 methyltransferase [Clostridium sp. HGF2]
          Length = 351

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 127/369 (34%), Positives = 200/369 (54%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +SL     +++ +  L+ G      + R  QI++W+Y +       MSD+S++ R  L Q
Sbjct: 2   KSLYDFTYDQMGDMALEQGW----KKFRAHQIFQWLYRKRAVSIDDMSDLSKDTRETLKQ 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            FS+   ++ D++++ DGT K+L       +     IE+V +      ++CV+SQVGC++
Sbjct: 58  QFSLTPLKLRDKQVASDGTTKYLFALEDGSL-----IESVLMQFDYGKSICVTSQVGCNM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +G  K  RNLT+ E++ QVL  +                +     ++S+IV+MG
Sbjct: 113 ACAFCASGLTKKKRNLTSGEMVAQVLYVQR--------------DLDKQEDRLSHIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
            GEP  N+++V   LS  +   GL    R IT+ST G VP I     E     LAISLHA
Sbjct: 159 TGEPFDNYEHVMNFLSTVNHDRGLGIGARHITISTCGVVPKIYEFAKEHTQYNLAISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+LR+ L+P+NR YPLE L++A ++Y   +N  R+TFEY++L+G+ND       L K+
Sbjct: 219 PNNELRDRLMPVNRAYPLEELMEAIQYYARENNR-RLTFEYILLRGVNDQKEHVAQLAKL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+ A +NLIP+N      +   D    + F + + + G    IR   G DI AACGQL
Sbjct: 278 LKGLNAYVNLIPYNAVDENGFQGVDHAHAMVFYDALMKQGVRCTIRKEHGADIDAACGQL 337

Query: 366 KSLSKRIPK 374
           +    +  +
Sbjct: 338 RVKHLKKEQ 346


>gi|223934018|ref|ZP_03625972.1| radical SAM enzyme, Cfr family [Streptococcus suis 89/1591]
 gi|302024309|ref|ZP_07249520.1| ribosomal RNA large subunit methyltransferase N [Streptococcus suis
           05HAS68]
 gi|330833298|ref|YP_004402123.1| radical SAM enzyme, Cfr family [Streptococcus suis ST3]
 gi|223897307|gb|EEF63714.1| radical SAM enzyme, Cfr family [Streptococcus suis 89/1591]
 gi|329307521|gb|AEB81937.1| radical SAM enzyme, Cfr family [Streptococcus suis ST3]
          Length = 370

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 211/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+    +  L + +L+ G      + R +QIW+W+Y   ++ F  M+++ + +   L 
Sbjct: 2   KPSIYAFSQANLVDWILENG----EKKFRATQIWEWLYRSRVQSFAEMTNLPKSLIEKLE 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  EHFVVNPLKQRIVQESKDGTIKYLFELPDGML-----IETVLMHQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G     R+LT+ EI+ Q++L +  L +             +   ++S+IV+M
Sbjct: 113 IGCTFCASGLIPKQRDLTSGEIVAQIMLVQKYLDE------------RNQNERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
           G+GEPL N+DNV   L + +D  GL+   R IT+STSG  P I     E + V LA+SLH
Sbjct: 161 GIGEPLDNYDNVMTFLRVVNDDKGLAIGARHITVSTSGLAPKIREFACEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ INRK+P+E+L +A   Y  ++N  R+TFEY+ML  +ND    A  L  
Sbjct: 221 APNNDLRSSIMRINRKFPIEVLFEAIEDYIKVTNR-RVTFEYIMLNEVNDGVEQAQELAD 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + INLIP+NP    + Y  S ++  + F + +K++G +  +R   G DI AA
Sbjct: 280 LTKNIRKLSYINLIPYNPVSEHDQYSRSTKERTLAFFDVLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTLKKDR 352


>gi|293402260|ref|ZP_06646398.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304367|gb|EFE45618.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 352

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 198/373 (53%), Gaps = 25/373 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +SL     E++     ++ +     + R  QI++W+Y + +     MSD+S+E R +L  
Sbjct: 2   KSLYDFNYEQM----AELALSHEWKKFRGHQIFQWLYRKRVTSIDEMSDLSKETREILKA 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           ++++    + D+++S DGT K+L       +     IE+V +      ++CV+SQVGC++
Sbjct: 58  NYALKPLTLKDKQVSSDGTTKYLFALEDGSL-----IESVLMQFDYGKSICVTSQVGCNM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           +C+FC +G  K  RNLT+ E++ QV+  +                +     ++S+IV+MG
Sbjct: 113 SCAFCASGLTKKKRNLTSGEMVAQVMYVQQ--------------DLDKQEERLSHIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHA 245
            GEP  N++NV   LS  +   GL    R IT+ST G VP I     E     LAISLHA
Sbjct: 159 TGEPFDNYENVMNFLSTVNHDRGLGIGARHITISTCGVVPKIYEFSKEHTQYNLAISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N LR+ L+PIN  YPLE L+ A R Y   +N  R+TFEY++L+G+ND       L K+
Sbjct: 219 PNNTLRDELMPINHAYPLEELMKAIRQYAAENNR-RLTFEYILLRGVNDQKEHVKQLAKL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+ A +NLIP+N      +   D    + F + + + G    IR   G DI AACGQL
Sbjct: 278 LRGLNAYVNLIPYNAVDEKGFQGVDHAHAMVFYDALMKEGIRCTIRKEHGADIDAACGQL 337

Query: 366 KSLSKRIPKVPRQ 378
           +    R     RQ
Sbjct: 338 RVKHLRKEAKERQ 350


>gi|283769598|ref|ZP_06342494.1| radical SAM enzyme, Cfr family [Bulleidia extructa W1219]
 gi|283103866|gb|EFC05252.1| radical SAM enzyme, Cfr family [Bulleidia extructa W1219]
          Length = 348

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 203/366 (55%), Gaps = 25/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +++  +   +LEE +L++G      + R  Q++ W+Y + +  F+ M+D+       L  
Sbjct: 2   QTIYDLTLHQLEELVLELG----QKKYRAKQLFTWLYRKRVLSFEEMTDLPTSFIEELKS 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           HF I+  + V  ++S DGTRK+L             IETV +      +LCV+SQ+GC++
Sbjct: 58  HFIIMPVKEVMRQVSKDGTRKYLFSLED-----GSSIETVLMHFNFGESLCVTSQLGCNM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +G  K  R+L+  EIL Q++  +                + S   +ISNIV+MG
Sbjct: 113 GCTFCASGLLKKQRDLSQGEILGQLMYVQKE--------------LDSENLRISNIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
            GEP  N+D+V      A+  +GL    R IT+ST G VP I    +      LAISLHA
Sbjct: 159 TGEPFDNYDHVLGFCKTANQDIGLGIGARHITISTCGIVPKIREFSKSHYQYNLAISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + +LR+ L+PIN +YPL  L+D+ + Y   SN RRITFEY++L G+NDS + A+ L  +
Sbjct: 219 PNQELRDKLMPINHRYPLSELMDSLKEYSE-SNHRRITFEYILLHGVNDSDQHAIELAHL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++G+ A +NLIP+N      Y  +D K  + F + + + G  + +R   G DI AACGQL
Sbjct: 278 IRGMNAYVNLIPYNKVDEKGYESTDDKTALHFYDVLMKHGVKATLRQKHGDDIDAACGQL 337

Query: 366 KSLSKR 371
           ++  ++
Sbjct: 338 RAKHEK 343


>gi|94990786|ref|YP_598886.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS10270]
 gi|123257976|sp|Q1JG02|RLMN_STRPD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|94544294|gb|ABF34342.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS10270]
          Length = 359

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 209/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL E  ++ G      + R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 2   KPSIYSLTRDELIEWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DSFCVNPLKQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L + EI  Q++L +    D               G ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV   L + +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ +NR +PLE L  A  +Y   +N  R+TFEY+ML  +NDS + A  L  
Sbjct: 221 APNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279

Query: 305 ILK--GIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSKTMKKDR 352


>gi|225868978|ref|YP_002744926.1| radical SAM superfamily protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|259491996|sp|C0MD67|RLMN_STRS7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|225702254|emb|CAX00012.1| radical SAM superfamily protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 360

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 201/373 (53%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL    +  G        R +QIW W+Y + ++ F  M++IS+E   +L 
Sbjct: 2   KPSIYGLTRDELIAWAIDNG----QKAFRATQIWDWLYRKRVQSFDEMTNISKEFLAILK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F I   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DSFCINPLKQRVAQESADGTVKYLFELPDGML-----IETVLMRQHYGQSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L + EI  Q+++ ++                     ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMMVQNYFDQ------------RGQDERVSHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV   L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +PL+ L  A  +Y   +N  R+TFEY+ML  +ND    A  L  
Sbjct: 221 APNNELRSSIMRINRSFPLDKLFSAIEYYIETTNR-RVTFEYIMLNKVNDGVEQAQELAD 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 280 LTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKKDR 352


>gi|71892305|ref|YP_278039.1| putative pyruvate formate lyase activating enzyme 2 [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|123761466|sp|Q492D9|RLMN_BLOPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|71796411|gb|AAZ41162.1| putative pyruvate formate lyase activating enzyme 2 [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 373

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/363 (44%), Positives = 208/363 (57%), Gaps = 18/363 (4%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+ M +EEL     K+G        R+ QI +WIY     DF  M++IS+ ++  L
Sbjct: 12  KKVNLLNMNKEELLIFFDKLG----EKPFRSHQIMRWIYHYYCDDFNYMTNISKSLKERL 67

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  P I+ E++S DGT KW ++          +IETVYIPE  R TLCVSSQ+GC
Sbjct: 68  KQIAEIRAPIIIKEQLSSDGTIKWAMKI------DEQQIETVYIPENKRTTLCVSSQIGC 121

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L CSFC T  Q   RNL   EI+ QV  A  L+         + + I +    I+NIV 
Sbjct: 122 PLGCSFCGTAQQGFNRNLNVSEIIGQVWRAAQLIN------LNKKIKIKNNRFPITNIVF 175

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  NV  ++ I  D  G   SKR ITLST+G VP I ++   I + LAISLH
Sbjct: 176 MGMGEPLLNIVNVVSAIRIILDDFGFKLSKRHITLSTAGIVPGIEKLKNMIDIPLAISLH 235

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRDALNL 302
           A ++ +RN ++PIN+KY +  +++A R Y     SN  RIT EYV+LK IND    A  L
Sbjct: 236 APNDIIRNKIMPINKKYNINSVLEAARRYSMDTKSNHGRITIEYVLLKNINDDVLHAHQL 295

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K L+GIP KINLIP+NP P   Y CS Q  +  F + + +    + IR  RG DI AAC
Sbjct: 296 AKQLQGIPCKINLIPWNPIPNIRYACSSQIRMRAFLKVLLKYNIVTIIRKIRGADINAAC 355

Query: 363 GQL 365
           GQL
Sbjct: 356 GQL 358


>gi|238916657|ref|YP_002930174.1| hypothetical protein EUBELI_00719 [Eubacterium eligens ATCC 27750]
 gi|259491988|sp|C4Z523|RLMN_EUBE2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|238872017|gb|ACR71727.1| Hypothetical protein EUBELI_00719 [Eubacterium eligens ATCC 27750]
          Length = 350

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 114/364 (31%), Positives = 199/364 (54%), Gaps = 29/364 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             +  +  +EL   +  +G      + R  Q+++W++ +    F   +++S  +R  L +
Sbjct: 2   TDIKSLNYDELVTYMAGLG----EKKFRAGQLYQWMHEKLADSFDECTNLSNALRQKLKE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  E V  + S  DGT K+L R           +E+V +      ++C+SSQVGC 
Sbjct: 58  TSEYVCLEPVRVQHSKLDGTEKYLFRLSD-----GNYVESVLMKYHHGNSVCISSQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +     VR+L   E+L Q+   + + G+                 ++SN+V+M
Sbjct: 113 MGCRFCASTLNGKVRDLRPSEMLDQIYRIQKITGE-----------------RVSNVVVM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           G GEP+ N+DN+ K + + +D  GL+ S+R IT+S+ G VP +  + + ++ + LAISLH
Sbjct: 156 GSGEPMDNYDNLIKFIELLNDERGLNISQRNITVSSCGIVPKLKELADLKLQITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++LR  ++PI  KY +E ++D CR+Y   +   RI+FEY ++KG+NDS   A  LI+
Sbjct: 216 APNDELRKTMMPIANKYSIEEIMDVCRYYIECTGR-RISFEYSLVKGVNDSMECAKQLIE 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KG+   INLIP NP    +Y  + ++++  F   ++++G +  IR   G DI  ACGQ
Sbjct: 275 LVKGMNCHINLIPVNPIKERDYKQTGKEEVYAFKNKLEKNGINVTIRREMGRDIDGACGQ 334

Query: 365 LKSL 368
           L++ 
Sbjct: 335 LRNK 338


>gi|153855358|ref|ZP_01996507.1| hypothetical protein DORLON_02521 [Dorea longicatena DSM 13814]
 gi|149752178|gb|EDM62109.1| hypothetical protein DORLON_02521 [Dorea longicatena DSM 13814]
          Length = 356

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 129/368 (35%), Positives = 205/368 (55%), Gaps = 29/368 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+ +     +EL+E +L IG        R+ QI++W++V+   DF  M+++S+ +R  
Sbjct: 1   MSKKDICSYNYDELKEEMLVIG----EKAFRSKQIYEWLHVKLADDFDEMTNLSKALREK 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L +++ I   +++D +IS  D T K+L       +     +E+V +      ++C+SSQV
Sbjct: 57  LKKNYEIRKVKMIDHQISKEDPTEKFLFELEDGNM-----VESVLMKYNYGNSVCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    LVR+L   E+L Q+   + + G+                 ++SN+
Sbjct: 112 GCRMGCRFCASTIGGLVRSLEPSEMLRQIYHIQKITGE-----------------RVSNV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL N+DN  K + + SD  GL+ S+R IT ST G VPN+ R+ EE + + LA+
Sbjct: 155 VVMGTGEPLDNYDNFVKFIHMLSDEHGLNISQRNITASTCGIVPNMRRLAEEGLQITLAL 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH  S + R  L+P+  KY L  ++DAC +Y   +   RITFEY ++ G+ND P D   
Sbjct: 215 SLHGSSQEKRKKLMPVANKYDLSEVLDACDYYFDKTGR-RITFEYSLVAGVNDQPDDIRE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  ILKG    +NLIP NP    ++   D+K+ + F   ++++G +  IR  RG DI  A
Sbjct: 274 LTTILKGRNCHLNLIPVNPIKERDFKKPDRKNAMEFKNKLEKNGINVTIRRERGSDIDGA 333

Query: 362 CGQLKSLS 369
           CGQL+   
Sbjct: 334 CGQLRRRH 341


>gi|225870018|ref|YP_002745965.1| radical SAM superfamily protein [Streptococcus equi subsp. equi
           4047]
 gi|254807212|sp|C0MBZ4|RLMN_STRE4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|225699422|emb|CAW92902.1| radical SAM superfamily protein [Streptococcus equi subsp. equi
           4047]
          Length = 360

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 202/373 (54%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL    +  G        R +QIW W+Y + ++ F  M++IS+E   +L 
Sbjct: 2   KPSIYGLTRDELIAWAIDNG----QKAFRATQIWDWLYRKRVQSFDEMTNISKEFVAILK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F I   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DSFCINPLKQRVAQESADGTVKYLFELPDGML-----IETVLMRQHYGQSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L + EI  Q+++ ++                 +   ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMMVQNYFDK------------RAQDERVSHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV   L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +PL+ L  A  +Y   +N  R+TFEY+ML  +ND    A  L  
Sbjct: 221 APNNELRSSIMRINRSFPLDKLFSAIEYYIETTNR-RVTFEYIMLNKVNDGVEQAQELAD 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 280 LTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKKDR 352


>gi|15675432|ref|NP_269606.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes M1 GAS]
 gi|21910720|ref|NP_664988.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS315]
 gi|28895590|ref|NP_801940.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes SSI-1]
 gi|56807972|ref|ZP_00365785.1| COG0820: Predicted Fe-S-cluster redox enzyme [Streptococcus
           pyogenes M49 591]
 gi|71903862|ref|YP_280665.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS6180]
 gi|71911074|ref|YP_282624.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS5005]
 gi|94994765|ref|YP_602863.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS10750]
 gi|209559696|ref|YP_002286168.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes NZ131]
 gi|81620716|sp|Q99YU5|RLMN_STRP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81706663|sp|Q7CEX7|RLMN_STRP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|122986830|sp|Q1J5R7|RLMN_STRPF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123747764|sp|Q48SK0|RLMN_STRPM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807217|sp|B5XMB1|RLMN_STRPZ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|13622621|gb|AAK34327.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|21904923|gb|AAM79791.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|28810839|dbj|BAC63773.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|71802957|gb|AAX72310.1| radical SAM family enzyme [Streptococcus pyogenes MGAS6180]
 gi|71853856|gb|AAZ51879.1| radical SAM family enzyme [Streptococcus pyogenes MGAS5005]
 gi|94548273|gb|ABF38319.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS10750]
 gi|209540897|gb|ACI61473.1| hypothetical protein Spy49_1185c [Streptococcus pyogenes NZ131]
          Length = 359

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G      + R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 2   KPSIYSLTRDELIAWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DSFCVNPLKQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L + EI  Q++L +    D               G ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV   L + +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ +NR +PLE L  A  +Y   +N  R+TFEY+ML  +NDS + A  L  
Sbjct: 221 APNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279

Query: 305 ILK--GIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSKTMKKDR 352


>gi|285808444|gb|ADC35970.1| conserved hypothetical protein [uncultured bacterium 98]
          Length = 358

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 153/361 (42%), Positives = 211/361 (58%), Gaps = 26/361 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L  +   ELE AL   G      R    QI++W+Y RG+ D Q M+D+S+ +R +L+
Sbjct: 4   RPDLAELEPGELEAALDARGFE----RFHARQIYRWVYKRGVTDLQRMTDLSRALRGVLD 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F+   P +V +++S DGTRK+LL      +     IE V+IP+    T C+S+QVGC+
Sbjct: 60  TDFTASSPRVVTDELSVDGTRKFLL-----ALADGKRIEAVFIPDTPAMTFCISTQVGCA 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   LVRNLTA EI  QV +  +  G               +  +  NIV+M
Sbjct: 115 MACGFCLTGKMGLVRNLTAGEIAGQVRVLAAATG---------------LADQAFNIVLM 159

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N+DN  K+L +     GLS S RR+TLST G VP + R+  E +   LA+SLH
Sbjct: 160 GMGEPLHNYDNTMKALRMLHSEHGLSISPRRVTLSTVGIVPGLERLAREPLMPNLAVSLH 219

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++ R+ LVP NRKYPL  +I AC+ +P L    RITFEYV+L G+NDSP DA  L++
Sbjct: 220 ATTDEQRSALVPPNRKYPLADIIAACQRFP-LKQRSRITFEYVLLDGVNDSPEDARRLVR 278

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L GI AK+NLIP NP PG  +       +  F++ +     +  +R  RG DI AACGQ
Sbjct: 279 LLAGIRAKVNLIPLNPAPGIPFERPSDARVDRFAQILADRHLTVSVRKSRGQDIRAACGQ 338

Query: 365 L 365
           L
Sbjct: 339 L 339


>gi|291522861|emb|CBK81154.1| 23S rRNA m(2)A-2503 methyltransferase [Coprococcus catus GD/7]
          Length = 352

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 203/366 (55%), Gaps = 28/366 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K  +  M   ELE    ++       + R  QI++W++VR    F  M+++S+++R  L
Sbjct: 3   DKTDIKSMTLPELEVFTTEV---LGEKKFRAKQIYEWMHVRLADSFDEMTNLSKDLRQKL 59

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           ++   + + E+V++ +S  DGT K+L +     I     IE+V +  K   ++C+SSQVG
Sbjct: 60  SEQCVLTHLEMVEKYVSAIDGTAKYLFKLSDDRI-----IESVLMHYKHGNSVCISSQVG 114

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +    L R + A E+L ++   +   G+                 ++SN+V
Sbjct: 115 CRMGCRFCASTLGGLERQMLASEMLDEIYQIQKDSGE-----------------RVSNVV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG GEPL N+D + + + I + + GL  S+R +T+ST G VP I  + + ++ + LAIS
Sbjct: 158 VMGTGEPLDNYDALVRMIDILTHAPGLDISQRNVTVSTCGLVPKIYELADLKLQITLAIS 217

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHAV+++ R  L+PI   Y +E ++ ACR+Y   +N  RITFEY ++KG+NDS  DA  L
Sbjct: 218 LHAVNDEKRRELMPIANTYSIEEILKACRYYYSQTNR-RITFEYSLVKGVNDSREDAKAL 276

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +L+GI   INLIP NP     Y  ++   ++ F   +++ G +  IR   G DI AAC
Sbjct: 277 AALLEGINCHINLIPVNPIEERSYRQTEADAVLKFKNMLEKYGRNVTIRREMGRDIQAAC 336

Query: 363 GQLKSL 368
           GQL+  
Sbjct: 337 GQLRKK 342


>gi|195977717|ref|YP_002122961.1| 23S rRNA methyltransferase and florfenicol/chloramphenicol
           resistance protein [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|254807213|sp|B4U1T1|RLMN_STREM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|195974422|gb|ACG61948.1| 23S rRNA methyltransferase and florfenicol/chloramphenicol
           resistance protein [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 360

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 201/373 (53%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+ R+EL    +  G        R +QIW W+Y + I+ F  M++IS+E   +L 
Sbjct: 2   KPSIYGLTRDELIAWAIDNG----QKAFRATQIWDWLYRKRIQSFDEMTNISKEFLAILK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F I   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DSFCINPLKQRVAQESADGTVKYLFELPDGML-----IETVLMRQHYGQSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L + EI  Q+++ ++                     ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMMVQNYFDQ------------RGQDERVSHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV   L   +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +PL+ L  A  +Y   +N  R+TFEY+ML  +ND    A  L  
Sbjct: 221 APNNELRSSIMRINRSFPLDKLFSAIEYYIETTNR-RVTFEYIMLNKVNDGVEQAQELAD 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K I   + +NLIP+NP    + Y  S ++ +  F + +K++G +  +R   G DI AA
Sbjct: 280 LTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKKDR 352


>gi|291536614|emb|CBL09726.1| 23S rRNA m(2)A-2503 methyltransferase [Roseburia intestinalis
           M50/1]
          Length = 349

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 195/366 (53%), Gaps = 29/366 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  +  M  EEL+  +  IG        R  Q+++W++ +    F  M+++S+ ++  L
Sbjct: 4   EKTDIKSMNLEELKSYMESIG----EKPFRAKQLYQWMHEKQAASFDEMTNLSKSLQEKL 59

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +    +  +    +IS  DGTRK+L       +     IE+V +  K   ++C+SSQVG
Sbjct: 60  KKECHFVSLKQEAVQISKIDGTRKYLFALDDGNV-----IESVLMRYKHGNSVCISSQVG 114

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +    LVR LT  E+L Q+       G+                 +++N+V
Sbjct: 115 CRMGCRFCASTLDGLVRGLTPSEMLDQIYRITRDTGE-----------------RVANVV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG GEP+ NFDN+ K + + +D  GL+ S+R +T+ST G VP +  + ++ + + LA+S
Sbjct: 158 VMGTGEPMDNFDNLLKFIELLTDENGLNISQRNVTVSTCGIVPKMRELADKKLQITLALS 217

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA S + R  L+P+  KY +  +I+ACR+Y   +   R+TFEY ++ G+ND+  D   L
Sbjct: 218 LHASSQEKRLELMPVANKYEIHEVIEACRYYFEQTGR-RVTFEYSLVGGVNDTDEDVRRL 276

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++ G+   +NLIP NP     Y+  D + I+ F   ++++  +  IR   G DI  AC
Sbjct: 277 ADLIHGMNCHVNLIPVNPIKERSYVQPDHEAILNFKNRLEKNAINVTIRREMGRDIDGAC 336

Query: 363 GQLKSL 368
           GQL+  
Sbjct: 337 GQLRKR 342


>gi|50914628|ref|YP_060600.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS10394]
 gi|139473446|ref|YP_001128162.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes str. Manfredo]
 gi|81371810|sp|Q5XAZ6|RLMN_STRP6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829905|sp|A2RDK1|RLMN_STRPG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|50903702|gb|AAT87417.1| Florfenicol resistance protein [Streptococcus pyogenes MGAS10394]
 gi|134271693|emb|CAM29926.1| radical SAM superfamily protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 359

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G      + R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 2   KPSIYSLTRDELIAWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DSFCVNPLKQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L + EI  Q++L +    D               G ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV   L + +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ +NR +PLE L  A  +Y   +N  R+TFEY+ML  +NDS + A  L  
Sbjct: 221 APNNDLRSRIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279

Query: 305 ILK--GIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSKTMKKDR 352


>gi|117926273|ref|YP_866890.1| radical SAM protein [Magnetococcus sp. MC-1]
 gi|205829786|sp|A0LBZ1|RLMN_MAGSM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|117610029|gb|ABK45484.1| 23S rRNA m(2)A-2503 methyltransferase [Magnetococcus sp. MC-1]
          Length = 356

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/369 (44%), Positives = 222/369 (60%), Gaps = 23/369 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L G+ RE L   +++          R  Q+W W++V+  +    MSD+S + R  L+  
Sbjct: 7   DLTGLTREALTSLVVEQ---LGEKPFRARQLWSWLHVKLAQHLDEMSDLSIDFRRKLSAL 63

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            + + PE+   +IS DGT KWLLR          +IETVYIPE  RGTLC+SSQVGC+L+
Sbjct: 64  STPLRPEVSTHQISRDGTEKWLLRLSD-----GQQIETVYIPEDERGTLCISSQVGCTLS 118

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC+TG Q   RNLT  EI+ QVL AR                + +  ++++NIV+MGM
Sbjct: 119 CPFCHTGAQGFARNLTPSEIVQQVLFARR--------------TLAARDKRVTNIVLMGM 164

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N++ V+ ++ I  D  GL+F  R++TLST+G +P + + G E+GV LAISLHAV 
Sbjct: 165 GEPLYNYEAVRDAVLILLDDSGLAFGTRKVTLSTAGLLPKMEQAGRELGVNLAISLHAVR 224

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           + LR+ LVP+N+KY L+ L  A   YP  S   R+T+EYVML G+NDS  DA   +  LK
Sbjct: 225 DTLRDELVPLNKKYNLQALRAATLRYPLKSGR-RVTWEYVMLHGVNDSEDDARLFVSFLK 283

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            IP+KINLIPFNPWPG  Y  S    I  F + + ++G+ + IR  RG DI AACGQLK 
Sbjct: 284 DIPSKINLIPFNPWPGVPYQSSSMTRIAAFQKILYQAGFVTVIRDRRGEDIDAACGQLKG 343

Query: 368 LSKRIPKVP 376
             +     P
Sbjct: 344 AVQGARPRP 352


>gi|303326495|ref|ZP_07356938.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3]
 gi|302864411|gb|EFL87342.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3]
          Length = 353

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 141/369 (38%), Positives = 208/369 (56%), Gaps = 27/369 (7%)

Query: 7   ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
            +L+     EL + +  ++G P    + R  Q+W+WI+ +  RDF  MS++S+  R  L 
Sbjct: 2   INLLNYTLPELTDWMQTELGEP----KFRAVQVWQWIWQKMARDFDAMSNVSKACRARLA 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120
           +   I +PE+   + S DGT K+LLR     +     +ETV IP  S     R T C+SS
Sbjct: 58  ETARIDWPEVARVQESSDGTTKFLLRLEDGAL-----VETVLIPSDSREGVRRWTQCLSS 112

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C+FC TG     RN+T  EIL Q+L+AR  LGD      +           + 
Sbjct: 113 QVGCAMGCTFCATGDMGFERNMTMGEILGQILVAREHLGDNRPDWPV-----------LR 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V MGMGEPL N   V ++L   ++  GL+FS RRIT+ST G    +A +G      LA
Sbjct: 162 NLVFMGMGEPLLNLREVMRALQSLNNDKGLNFSPRRITVSTCGIEKGLAELGASGLAYLA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA + +LR  ++P   ++PL+ L+ A + YP L    RITFEY++L GIND P  A 
Sbjct: 222 VSLHAPTQELRARIMPKAARWPLDQLLAALKSYP-LKTRERITFEYLLLGGINDGPGQAG 280

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L +++  I  K+NLI +NP  G  Y   D+  ++ F +C+ +   ++ +R  +G DI A
Sbjct: 281 ELARLVADIKGKLNLIVYNPAEGAPYAAPDEARVLAFEQCLWKRHITAIVRKSKGQDIKA 340

Query: 361 ACGQLKSLS 369
           ACGQLK+ S
Sbjct: 341 ACGQLKAAS 349


>gi|210622414|ref|ZP_03293146.1| hypothetical protein CLOHIR_01094 [Clostridium hiranonis DSM 13275]
 gi|210154230|gb|EEA85236.1| hypothetical protein CLOHIR_01094 [Clostridium hiranonis DSM 13275]
          Length = 342

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 200/368 (54%), Gaps = 30/368 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K++L      E++E + +IG        R +Q++ WIY +G + F  M +I + +R  L
Sbjct: 3   NKKALKNFTEAEMKEFMKEIG----EKAFRGTQVYSWIY-KGAKTFDDMKNIPKSLREKL 57

Query: 65  NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +   I   +I  +  S DG T+K+L       I     IETV +   SR T+CVS+QVG
Sbjct: 58  EEVSYIGNIDIELKLESKDGKTKKYLFLLNDGNI-----IETVMMDYDSRVTVCVSNQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +    LVRNL   EIL Q++  +                    G+++SN+V
Sbjct: 113 CRMGCRFCASTMDGLVRNLEPWEILDQIMKIQE-----------------DTGKRVSNLV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG GEPL N+DN K+ L I +D  GL+   R ITLST G VP I  + + EI + LAIS
Sbjct: 156 LMGSGEPLDNYDNTKQFLKIVNDENGLNIGYRHITLSTCGIVPKIYELADLEIPINLAIS 215

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+  ++ R  ++P+  KY ++ ++DACR+Y   +N  R+TFEY ++KG+ND  ++A  L
Sbjct: 216 LHSPYDEKRKEIMPVANKYSIKEILDACRYYIKKTNR-RVTFEYSLIKGVNDGKKEAEAL 274

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LKG+   +NLIP N     ++   D+  I  F + ++     + +R   G DI  AC
Sbjct: 275 ASLLKGMLCHVNLIPINEVDERDFKKPDKAFIYKFRDYLEERNIPATVRISMGSDISGAC 334

Query: 363 GQLKSLSK 370
           GQL+   K
Sbjct: 335 GQLRRKHK 342


>gi|253580148|ref|ZP_04857415.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848667|gb|EES76630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 346

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 114/362 (31%), Positives = 197/362 (54%), Gaps = 30/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             +  M  +EL++ +  +G        R  QI+ W++   +  +  M+++S+ +R  L +
Sbjct: 2   TDIKSMTIDELKKLMTTLG----DKPFRAKQIYSWLHEHLVTSYDEMTNLSKSLREKLKE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            + +   ++V  + S  DGT+K+L R     +     IE+V +  K   ++C+SSQVGC 
Sbjct: 58  -YPVTALKMVKVQTSRIDGTQKYLFRLSDGNV-----IESVLMRYKHGNSVCISSQVGCR 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    L R L   E+L Q+   ++L G+                 ++SN+V+M
Sbjct: 112 MGCRFCASTIGGLTRCLLPSEMLDQIYRIQALTGE-----------------RVSNVVVM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N++N+ + + I ++  GL  S+R +T+ST G VP I  + +E + + LA+SLH
Sbjct: 155 GTGEPLDNYENLLRFIHILTEDGGLHISQRNLTVSTCGLVPKIYDLAKEKLQMTLALSLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++  R  L+PI  KY ++ +++ACR+Y   +   RITFEY ++ G+NDS  DA  L  
Sbjct: 215 APNDVKRRELMPIANKYSMDEVLEACRYYFKETGR-RITFEYSLVAGVNDSDEDARELSG 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            ++ +   +NLIP NP     ++ S ++ +  F   +++ G +  IR   G DI  ACGQ
Sbjct: 274 RIRDMNCHVNLIPVNPIKERSFVRSTRQAVENFKIKLEKCGINVTIRREMGSDIDGACGQ 333

Query: 365 LK 366
           L+
Sbjct: 334 LR 335


>gi|167757025|ref|ZP_02429152.1| hypothetical protein CLORAM_02574 [Clostridium ramosum DSM 1402]
 gi|237735905|ref|ZP_04566386.1| ribosomal RNA large subunit methyltransferase N [Mollicutes
           bacterium D7]
 gi|167703200|gb|EDS17779.1| hypothetical protein CLORAM_02574 [Clostridium ramosum DSM 1402]
 gi|229381650|gb|EEO31741.1| ribosomal RNA large subunit methyltransferase N [Coprobacillus sp.
           D7]
          Length = 342

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 122/363 (33%), Positives = 200/363 (55%), Gaps = 28/363 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +++     E+L E    I    +    R  Q++ W+Y +  R F  MSD+S+++R+ L  
Sbjct: 2   KNIYDYSLEQLTEYFASI----KQKPFRAKQVFSWLYQKDARSFDDMSDLSKDLRNQLKV 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            FS+   +I ++++S DGT K+L       +     IE+V +      +LCV+SQ+GC++
Sbjct: 58  EFSLDVLKIKEKQVSRDGTIKYLFELLDGSL-----IESVLMIHDYGKSLCVTSQIGCNM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +G  +  R+LT  EI+ Q++  +                   + +++S++V+MG
Sbjct: 113 KCTFCASGLLRKQRDLTPGEIVAQIIKVQQ-----------------DIDQRVSHVVVMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+DNV + + I +   GL+   R IT+ST G +  I R  EE I   LAISLHA
Sbjct: 156 TGEPFDNYDNVMEFVRIINHPHGLAIGARHITISTCGLIKGIKRYSEEGIQTNLAISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++R+ L+PIN+ +P++ L +A   Y   +N  R+TFEY+MLKG+ND    A  L   
Sbjct: 216 ANDEIRDELMPINKVHPMDDLREAISEYIDKTNR-RVTFEYIMLKGVNDDIVYARQLAHY 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+ A +NLIP+N      Y  SD++ +  F   + R   +  +R   G DI  ACGQL
Sbjct: 275 LRGLNAYVNLIPYNSVDEHGYQPSDKETVEIFKNELLRLHINVTLRKEHGRDIDGACGQL 334

Query: 366 KSL 368
           ++ 
Sbjct: 335 RAK 337


>gi|150016033|ref|YP_001308287.1| radical SAM protein [Clostridium beijerinckii NCIMB 8052]
 gi|205829735|sp|A6LSK1|RLMN_CLOB8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|149902498|gb|ABR33331.1| radical SAM enzyme, Cfr family [Clostridium beijerinckii NCIMB
           8052]
          Length = 353

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 137/361 (37%), Positives = 203/361 (56%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L+    EEL+  + + G        R  QI  WIY +G+++F  M +I + +   L ++
Sbjct: 3   NLLDFTLEELKAWMKENGESA----FRGQQILSWIY-KGVKEFDNMKNIPKPLVQKLKEN 57

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F +  P+I++   S  DGT K+LL F    +     IE+V +  K   ++C+S+QVGC++
Sbjct: 58  FFVGLPKIIEVYKSNIDGTEKFLLGFKDGNL-----IESVLMRYKHGNSICISTQVGCAM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +  +  VRNLT  EIL Q+++ +  + +                 +ISN+V+MG
Sbjct: 113 GCKFCASTIEGKVRNLTTGEILSQIMVVQDYINE-----------------RISNVVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
            GEPL N++NV K L I S    L+  +R ITLST G VP I  + + E+ + LA+SLHA
Sbjct: 156 SGEPLDNYNNVIKFLEIVSAEYALNIGQRHITLSTCGIVPKIYELADKELSITLALSLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            SND R  ++PI  +Y +E +++ACR+Y   +N  RITFEY ++K +ND   DA  L K+
Sbjct: 216 FSNDKRKEIMPIANRYSIEEILEACRYYINKTNR-RITFEYALVKDVNDGREDAKALGKL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N      Y  S +K I  FSE +K  G     R   G DI AACGQL
Sbjct: 275 LKGMLCHVNLIPVNEIKENTYKRSSKKAIEDFSEILKNHGIEVTTRREMGSDINAACGQL 334

Query: 366 K 366
           +
Sbjct: 335 R 335


>gi|320353873|ref|YP_004195212.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
           DSM 2032]
 gi|320122375|gb|ADW17921.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
           DSM 2032]
          Length = 371

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 157/388 (40%), Positives = 221/388 (56%), Gaps = 27/388 (6%)

Query: 1   MN-FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
           MN   KK  L  + +E+L   +  +G P      R  QI  WIY  GI DF  M+D+++E
Sbjct: 1   MNVAAKKTDLKNLTQEQLVRFVESLGQPA----FRGRQILAWIYRPGIIDFTQMTDLAKE 56

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
            R +L Q   +   +    + S DG  K+  R     I     IE+V IPE+ R TLCVS
Sbjct: 57  FRAILTQSAFMSRFDDCMVECSRDGAVKFAFRLDDGQI-----IESVLIPEEDRNTLCVS 111

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC++ CSFC TG     RNLT  EI+ QV   R                +      +
Sbjct: 112 SQVGCAMGCSFCLTGAMGFCRNLTTAEIVNQVCAVRDW-------------TLAHDKGLL 158

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +NIV MGMGEPL NFDN+  +++I ++  GL FS RRIT+ST G VP + R+GEE  V L
Sbjct: 159 TNIVFMGMGEPLANFDNLLDAIAILTEQRGLDFSNRRITVSTCGLVPQMRRLGEETDVNL 218

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHAV++++R+ L+P+N++YP+  LI+ CR Y      +RI FEY +L+GINDS  DA
Sbjct: 219 AVSLHAVNDEVRSRLMPVNKRYPIAELIEVCRTYRQKR-RKRIMFEYTLLQGINDSDADA 277

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           + L ++L+ +P KINL+  NP  G  Y    ++ ++ F   ++  GY+  IRT RG DI 
Sbjct: 278 VQLAELLREVPCKINLLAVNPGSGSAYQSPGEERVLCFQRILRDRGYTVFIRTSRGEDIS 337

Query: 360 AACGQLKSL---SKRIPKVPRQEMQITG 384
           AACGQL       ++   + +  +Q TG
Sbjct: 338 AACGQLAGKGWNEEQAISLDKTTLQSTG 365


>gi|295135350|ref|YP_003586026.1| radical SAM superfamily protein, UPF0063 [Zunongwangia profunda
           SM-A87]
 gi|294983365|gb|ADF53830.1| radical SAM superfamily protein, UPF0063 [Zunongwangia profunda
           SM-A87]
          Length = 348

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 210/366 (57%), Gaps = 24/366 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK+ +  + +++L+E  ++ G        R SQ+++W++ +G  DF  M++IS++ R +L
Sbjct: 4   KKKDIRALTKKQLQEFFVEHG----DKSFRGSQVYEWLWSKGAHDFDEMTNISKQTRAML 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            ++F I +  +   + S DGT K  ++           +E+V IP  +R T CVSSQVGC
Sbjct: 60  AENFVINHIRVDQMQRSSDGTIKNAVKLHDNLT-----VESVLIPTPTRTTACVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C FC T   K +RNL  +EI  QV+              I+        R +SNIV 
Sbjct: 115 SLDCQFCATARLKRMRNLNPDEIYDQVVA-------------IDNESRLYFDRPLSNIVF 161

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MGMGEPL N++NV K++   +   GL  S +RIT+STSG    I ++ + E  + LA+SL
Sbjct: 162 MGMGEPLMNYNNVMKAVEKITSDEGLGMSAKRITISTSGVPKMIKKLADDEAKIKLAVSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++++R  ++P N  +PLE L +A  ++   +   RIT+EY++ K +ND+ +DA+ L+
Sbjct: 222 HAATDEVRTRIMPFNETFPLEDLREALEYWYSKT-KSRITYEYIVWKDVNDTRKDAMALV 280

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +  K +P K+NLI +NP    ++  +  +    + + ++++G +  +R  RG DI AACG
Sbjct: 281 RFCKFVPCKVNLIEYNPIDDGDFQQASSQATAMYQQLLEQNGITVTVRRSRGKDIDAACG 340

Query: 364 QLKSLS 369
           QL + S
Sbjct: 341 QLANKS 346


>gi|238924694|ref|YP_002938210.1| radical SAM enzyme, Cfr family [Eubacterium rectale ATCC 33656]
 gi|238876369|gb|ACR76076.1| radical SAM enzyme, Cfr family [Eubacterium rectale ATCC 33656]
          Length = 354

 Score =  414 bits (1065), Expect = e-114,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 208/378 (55%), Gaps = 31/378 (8%)

Query: 1   MNFLKKE--SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
           M  +K++   +  M  +EL E ++ +G      + R  QI++WI+V+ +  F  M++IS+
Sbjct: 1   MEQIKEQLTDIKSMNMDELTEFIISLG----EKKFRAKQIYEWIHVKHVDSFDEMTNISK 56

Query: 59  EVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
           +   +L  +  +I  +  + ++S  DGTRK+L       +     IE+V +  K   ++C
Sbjct: 57  KFIQVLKDNAILISLKKEEVQVSKLDGTRKYLFALDDGNV-----IESVLMKYKHGNSVC 111

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +SSQVGC + C FC +    LVR L   E++ Q+      +G+                 
Sbjct: 112 ISSQVGCRMGCRFCASTLDGLVRGLRPSEMIDQIYQIGKDIGE----------------- 154

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
           +ISN+V+MG GEPL N+DN+ + + + +D  G++ S+R +T+ST G VP + ++ +E + 
Sbjct: 155 RISNVVVMGTGEPLDNYDNLLRFIELLTDENGINISQRNLTVSTCGLVPRMRQLADEKLA 214

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LA+SLHA + + R  L+P+   Y +  ++DAC++Y   +   R+TFEY ++ G+ND+ 
Sbjct: 215 ITLALSLHASNQEKRKALMPVANSYDIHDVVDACKYYFAQTGR-RVTFEYSLVGGVNDTA 273

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
            DA  L  ++ G+   INLIP NP    +Y+ S++  I  F   ++++G +  IR   G 
Sbjct: 274 EDAAELSALVHGMNCHINLIPVNPIKERDYVQSNKGVIEAFKNRLEKNGINVTIRREMGR 333

Query: 357 DILAACGQLKSLSKRIPK 374
           DI  ACGQL+       +
Sbjct: 334 DIDGACGQLRKKHIDKER 351


>gi|66806177|ref|XP_636811.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4]
 gi|60465214|gb|EAL63309.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4]
          Length = 407

 Score =  414 bits (1065), Expect = e-114,   Method: Composition-based stats.
 Identities = 168/381 (44%), Positives = 241/381 (63%), Gaps = 21/381 (5%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           + +KK +LIG+ ++ELE+ +LK+G P    +  + QIW ++Y +GI D      +S+E R
Sbjct: 44  DIIKKINLIGIQKDELEDKVLKLGYP----KYLSEQIWAFMYNKGIVDINSFERVSKEKR 99

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             +   + +   EI   ++S DGTRK L+ F         E+E+V+IPE  RGTLCVSSQ
Sbjct: 100 EEIKSKYEVNIGEITKHQLSVDGTRKLLISF------DGAEVESVFIPEGKRGTLCVSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+  C+FC+TGTQK +RNLTA EI+ QV+  R +L DF            S+ R ++N
Sbjct: 154 VGCTFACTFCHTGTQKFIRNLTASEIVSQVIATRHVLNDFTDS---------SIKRTLTN 204

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLA 240
           IV MG GEP  N+ NV K++ I +D  GL+  K +IT+STSG VP I R+G +   + LA
Sbjct: 205 IVFMGQGEPFYNYRNVSKAIKIITDPNGLAIGKSKITVSTSGVVPLIDRLGSDFPGIGLA 264

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLH+ ++  R+ +VP NR++P+  L++AC  +   +   RIT EYVMLKG+NDS +DA 
Sbjct: 265 ISLHSANDKTRSEIVPANRQWPISELVEACIKF-SKNCKERITIEYVMLKGVNDSEQDAY 323

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           +L+K+ K  P+ +NLIPFNPWPG +Y  S ++ I  FS+ +   G    IR PRG DILA
Sbjct: 324 DLVKLSKSFPSFVNLIPFNPWPGSQYKSSSKETISQFSKILDDKGIKVTIRQPRGRDILA 383

Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381
           ACGQL + S +    P Q ++
Sbjct: 384 ACGQLNTESIKEINKPIQPLE 404


>gi|309790982|ref|ZP_07685522.1| radical SAM protein [Oscillochloris trichoides DG6]
 gi|308226955|gb|EFO80643.1| radical SAM protein [Oscillochloris trichoides DG6]
          Length = 375

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 135/381 (35%), Positives = 196/381 (51%), Gaps = 28/381 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +   SL  M   +LE  L   G P      R  QI++ +YV    D   M+D+ Q +R  
Sbjct: 1   MDNPSLYAMTLPDLEALLRAWGQPA----FRARQIYRQLYVNLAADPAAMTDLPQALRER 56

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L    ++    +V  + S DG TRK L   P       V+IETV +    R T+CVS+Q 
Sbjct: 57  LAHEATLNPLRLVRSQSSADGLTRKALFALPD-----GVQIETVLMIYADRATVCVSTQA 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG------ 176
           GC++ CSFC T T  L RNLTA E++ QVL A   +          G      G      
Sbjct: 112 GCAMGCSFCATATLGLRRNLTAGEMVAQVLWASREVRSLAVPATQPGHAHSEEGATWWGE 171

Query: 177 --------RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
                    ++SN+V MGMGEP  N+D    ++    +  G +   R +T+ST G VP I
Sbjct: 172 ARALRRPLERVSNLVFMGMGEPFANYDRWWDAVQCLHNPQGFNMGARSMTVSTVGLVPGI 231

Query: 229 ARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            R+ +  + + LAISLHA  + LRN LVP+N +YP+  ++ A + Y   +   R++FEYV
Sbjct: 232 LRLADAGLPINLAISLHAPDDALRNELVPVNTRYPIREVLAAAQTYIEKTGR-RVSFEYV 290

Query: 288 MLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
           +++G ND P  AL L K+L+   +   +NLIP+NP PG     SD + +  F + +   G
Sbjct: 291 LIQGRNDHPHQALALAKLLRSQSLICHVNLIPWNPLPGSPLARSDLQRVHAFQQVLVDYG 350

Query: 346 YSSPIRTPRGLDILAACGQLK 366
            +  +R  RG++I AACGQL 
Sbjct: 351 LACTVRVERGVEIAAACGQLA 371


>gi|149010606|ref|ZP_01831977.1| hypothetical protein CGSSp19BS75_04607 [Streptococcus pneumoniae
           SP19-BS75]
 gi|147765087|gb|EDK72016.1| hypothetical protein CGSSp19BS75_04607 [Streptococcus pneumoniae
           SP19-BS75]
          Length = 361

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLPHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 +IS+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVCTINDDKGMAIGARHITISTSGLAHKIRDFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|239626555|ref|ZP_04669586.1| radical SAM enzyme [Clostridiales bacterium 1_7_47_FAA]
 gi|239516701|gb|EEQ56567.1| radical SAM enzyme [Clostridiales bacterium 1_7_47FAA]
          Length = 354

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 206/363 (56%), Gaps = 29/363 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           ++ +  M  EE+ E +  +G        R  QI+ WI+V+    F GMS +S+E+R  L 
Sbjct: 10  RKDIKSMTLEEVTEEMAALG----EKPFRAKQIYDWIHVKLAGSFDGMSSLSKELRQKLK 65

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            ++S+    I +E+IS  DGTRK+L      C+     IE+V++      ++C+SSQVGC
Sbjct: 66  DNYSLTCLSITEERISQVDGTRKYLF-----CLEDGNIIESVWMQYHHGNSVCISSQVGC 120

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    L RNL   E+L Q+   ++  G                  ++SN+V+
Sbjct: 121 RMGCRFCASTLDGLERNLRPSEMLDQIYRIQAHTGQ-----------------RVSNVVV 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG GEP  N+DNV + L + S   GL+ S+R +T+ST G VP I +  +E + V LA+SL
Sbjct: 164 MGSGEPFDNYDNVIRFLRLISHEKGLNISQRNLTVSTCGIVPGILQFAQEGLAVTLALSL 223

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++++R  L+PI  +Y L+ +++AC +Y   +   R+TFEY +++G+ND+  +A  L 
Sbjct: 224 HAPNDEVRKTLMPIANRYKLKDVLEACHYYYEKTGR-RLTFEYSLVQGVNDNLDEARALS 282

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++K     +NLIP NP    +Y+ S +K I  F + ++++G +  IR   G DI  ACG
Sbjct: 283 RLIKDQHGHVNLIPVNPIKERDYVQSGRKAIADFKDLLEKNGINVTIRREMGRDIGGACG 342

Query: 364 QLK 366
           QL+
Sbjct: 343 QLR 345


>gi|222056625|ref|YP_002538987.1| radical SAM enzyme, Cfr family [Geobacter sp. FRC-32]
 gi|221565914|gb|ACM21886.1| radical SAM enzyme, Cfr family [Geobacter sp. FRC-32]
          Length = 345

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 140/370 (37%), Positives = 207/370 (55%), Gaps = 29/370 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  +      +LE  +   G      R R  QI+KW+Y +    F  M+++S++ R  
Sbjct: 1   MEKVDIKNFTLSQLEAHITGQG----KERFRAKQIFKWLYQQNATSFAQMTNLSKDFRAE 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +   I   E    + S DGT+K+L R           +E+V IP++ R TLC+SSQVG
Sbjct: 57  LEKTARISNLEAEAVESSADGTKKYLFRLSD-----GNAVESVLIPDEDRNTLCISSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TGT +L RNLT  EI+ QV   +                       + NIV
Sbjct: 112 CAMGCEFCLTGTFRLTRNLTTAEIVNQVCAVKK-------------------NEPVRNIV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N +NV  +L I +D  G  FS R++TLST+G VP +A +G  + V LAIS+
Sbjct: 153 FMGMGEPLANLENVIGALRILTDPDGFQFSTRKVTLSTAGLVPEMAELGAAVMVNLAISM 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           +A ++++R+ ++P+NR+YPL+ L+ AC+ +P  S    IT EYVM+KG+NDS  DA  L+
Sbjct: 213 NATTDEVRDRIMPVNRRYPLKELLAACKAFPLPSRRW-ITVEYVMIKGVNDSLDDAKRLV 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++   P+K+NLIPFN   GC+     Q  I  F + +     +   R+ RG DI AACG
Sbjct: 272 RLISTFPSKVNLIPFNEHEGCDLRTPTQDSIDRFHKFLLDKHVTVITRSSRGSDISAACG 331

Query: 364 QLKSLSKRIP 373
           QLK    ++ 
Sbjct: 332 QLKGRLDKVT 341


>gi|269837848|ref|YP_003320076.1| radical SAM enzyme, Cfr family [Sphaerobacter thermophilus DSM
           20745]
 gi|269787111|gb|ACZ39254.1| radical SAM enzyme, Cfr family [Sphaerobacter thermophilus DSM
           20745]
          Length = 347

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 140/364 (38%), Positives = 196/364 (53%), Gaps = 26/364 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +   ELEE L   G+P    R R  QI+ W Y +   D+  M+ + + +R  L    
Sbjct: 3   LYDLTLAELEERLAADGVP----RYRARQIFHWAYRQLAVDYDAMTVLPKTLRADLATRL 58

Query: 69  SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            +     V E  + DG T K L R           IETV +    R T+CVS QVGC++ 
Sbjct: 59  PLTPLTPVREVQTDDGETIKTLFRTVD-----GQHIETVLMFYPDRTTVCVSCQVGCAVG 113

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC TG   L RNLTA E+                            GR ++NIVMMGM
Sbjct: 114 CSFCATGMMGLTRNLTAGEM--------------VAQVVAAARRAREAGRTLTNIVMMGM 159

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAV 246
           GEP  N++   + + I  +  G++F  RRIT+STSG VP I R+  E   V LA+SLHA 
Sbjct: 160 GEPFQNYEATMRMVRILHEEEGMNFGARRITVSTSGLVPFIDRLAREPFQVKLAVSLHAP 219

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++DLR+ LVP+NR+YP+  LI ACR Y G +   R+TFEYV++ G+NDS  +A  L ++L
Sbjct: 220 NDDLRSSLVPLNRRYPIGELIAACRRYVGETGR-RVTFEYVLIDGVNDSDANAEELARLL 278

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +G+   +NLIP NP P   +     + I  F + ++  G  + +R  RG+DI AACGQL+
Sbjct: 279 RGLLCHVNLIPLNPTPAAPFGRPSVERINRFEQILRARGIPATVRYSRGVDISAACGQLR 338

Query: 367 SLSK 370
           +  +
Sbjct: 339 AEYE 342


>gi|19746482|ref|NP_607618.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS8232]
 gi|81632611|sp|Q8P058|RLMN_STRP8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|19748687|gb|AAL98117.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
          Length = 359

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G      + R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 2   KPSIYSLTRDELIAWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVPILN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DSFCVNPLKQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L + EI  Q++L +    D               G ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV   L + +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ +NR +PLE L  A  +Y   +N  R+TFEY+ML  +NDS + A  L  
Sbjct: 221 APNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279

Query: 305 ILK--GIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSKTMKKDR 352


>gi|303246742|ref|ZP_07333019.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ]
 gi|302491759|gb|EFL51639.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ]
          Length = 350

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 137/364 (37%), Positives = 202/364 (55%), Gaps = 22/364 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +LI +   ELE  ++ +G P      R  Q+W+W++ +G RD   M+D+S+ +R  L +
Sbjct: 2   TNLIDLTFHELEALIVSLGEPP----YRARQVWQWLWQKGCRDIGRMTDVSKALRSRLGE 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             +I +P+++    S DGT K+LL            +E V IPEK   T C+S+QVGC++
Sbjct: 58  VATIAWPDVLRVSESADGTVKFLLGLSD-----GEAVECVLIPEKDHYTACLSTQVGCAM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG     RN+T  E+L QVL+AR  L D                  + N+V MG
Sbjct: 113 GCGFCATGMLGFRRNMTPGEMLGQVLVARQYLLD------------KGEALALRNLVFMG 160

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+DN+ K+L       GL FS RRIT+ST+G   N+  +G      LA+SLHA 
Sbjct: 161 MGEPLLNYDNLVKTLEALHHPQGLDFSGRRITVSTAGVRRNLLELGRTGLCSLAVSLHAP 220

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           + + R  ++P   K PL  L+   R YP L    R+TFEY++L G+ND+  DA  L+++L
Sbjct: 221 TQEKRARIMPGAAKLPLSELMGILREYP-LKPRERLTFEYLLLDGVNDADADARELVRLL 279

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             + AK+NLI +N  PG  +       +  F E +K  G ++ IR  +G DI AACGQL+
Sbjct: 280 STVKAKVNLIVYNATPGLPFRQPAAGRVAAFQEILKAKGITATIRKSKGADIAAACGQLR 339

Query: 367 SLSK 370
           + ++
Sbjct: 340 AEAE 343


>gi|302389594|ref|YP_003825415.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani
           DSM 16646]
 gi|302200222|gb|ADL07792.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani
           DSM 16646]
          Length = 346

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 133/365 (36%), Positives = 212/365 (58%), Gaps = 30/365 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L GM  EEL++ ++ +G P      R  QI++WIY +G+ DF+ M+D+ + +   
Sbjct: 1   MAKTNLKGMTVEELQDFIVSLGEPP----YRARQIFRWIY-KGVTDFEKMTDLPRTLVEK 55

Query: 64  LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L +   I    I  +  S  D T K+L       I     IE+V +      ++CVSSQV
Sbjct: 56  LKELSYIDKIGIYKKFQSRKDATVKYLFLLSDNNI-----IESVKMEHSYGVSVCVSSQV 110

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C+FC +    L R+L + E++ Q+L+ +                   + ++IS++
Sbjct: 111 GCAMGCAFCASTIDGLKRSLNSGEMVDQILVIQE-----------------DIKKRISHV 153

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL N+D + K L+I +  +  + S RRIT+ST G VP I R+ +E + + L++
Sbjct: 154 VIMGSGEPLLNYDELIKFLNIINSPLAFNISYRRITVSTCGIVPEIRRLADEGLPITLSV 213

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  +DLR+ LVP+NR+YP+  L+DAC++Y   +N  RITFEY ++  +NDS   A+ 
Sbjct: 214 SLHAPEDDLRDKLVPVNRRYPILELLDACKYYIIKTNR-RITFEYALISDVNDSKECAVK 272

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG+   +NLIP NP    +++ S  ++I  F E ++  G S  +R   G DI AA
Sbjct: 273 LARLLKGLLCHVNLIPLNPVRERDFMRSKPENIRLFQEILRHYGISVTVRQEMGADIEAA 332

Query: 362 CGQLK 366
           CGQL+
Sbjct: 333 CGQLR 337


>gi|297519092|ref|ZP_06937478.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           OP50]
          Length = 330

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 142/334 (42%), Positives = 192/334 (57%), Gaps = 22/334 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +R  L 
Sbjct: 17  KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSSQVGC+
Sbjct: 73  EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+N+VMM
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LAISLHA
Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303
            ++++R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    A  L 
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337
           ++LK  P KINLIP+NP+PG  Y  S    I  F
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRF 330


>gi|78223881|ref|YP_385628.1| ribosomal RNA large subunit methyltransferase N [Geobacter
           metallireducens GS-15]
 gi|123742801|sp|Q39S71|RLMN_GEOMG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78195136|gb|ABB32903.1| 23S rRNA m(2)A-2503 methyltransferase [Geobacter metallireducens
           GS-15]
          Length = 346

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 158/371 (42%), Positives = 216/371 (58%), Gaps = 31/371 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN   K  +  +  ++L   L   G      R R  QI+KW+Y +  R F  M+D+++++
Sbjct: 2   MNG--KIDIKNLTLDDLIAFLAGKG----KERYRARQIFKWLYQKDARSFAEMTDLAKDL 55

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I   E    ++S DGTRK+L R           +E+V IPE+ R TLC+SS
Sbjct: 56  RRDLEETAVISDLEPEAMEVSRDGTRKYLFRLED-----GNTVESVLIPEEDRTTLCISS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C FC TGT +L RNLTA EI+ Q+   R                       + 
Sbjct: 111 QVGCAMACEFCLTGTFRLTRNLTAGEIVNQICAVRR-------------------DVPVR 151

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIV MGMGEPL N DNV K+L I     GL FS RR+T+STSG VP + R+G E+ V LA
Sbjct: 152 NIVFMGMGEPLANLDNVVKALKIILHDDGLQFSTRRVTVSTSGLVPEMERLGREVTVNLA 211

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SL+A ++++R+ ++P+NR+YPL +L+DACR YP L   R+IT EYVM+KG+NDS  DA 
Sbjct: 212 VSLNATTDEVRDRIMPVNRRYPLRLLLDACRSYP-LPGRRKITIEYVMIKGLNDSLEDAK 270

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+K+L  I +KINLIPFN   GC +   DQ  I  F   +    ++   R+ RG DI A
Sbjct: 271 RLVKLLSDISSKINLIPFNEHDGCSFKSPDQGAIDVFHSYLLSKHFTVITRSSRGSDISA 330

Query: 361 ACGQLKSLSKR 371
           ACGQLK    +
Sbjct: 331 ACGQLKGKLDK 341


>gi|253701168|ref|YP_003022357.1| ribosomal RNA large subunit methyltransferase N [Geobacter sp. M21]
 gi|251776018|gb|ACT18599.1| radical SAM enzyme, Cfr family [Geobacter sp. M21]
          Length = 351

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 140/375 (37%), Positives = 211/375 (56%), Gaps = 29/375 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  +  +  + LE  +  +G      R R  QI+KW+Y      F+ M+++S+E R +
Sbjct: 1   MQKTDIKNLTLQGLESYISGLG----KERFRAKQIFKWLYQLDAGSFEEMTNVSKEFRSM 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +   I        + S DGTRK+L R           +E+V IP++ R TLC+SSQVG
Sbjct: 57  LGEIAQISNLTPEVVEASEDGTRKYLFRLFD-----GSAVESVLIPDEGRNTLCISSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC TG+  L RNLT  EI+ QV   +                     + +SNIV
Sbjct: 112 CAMGCAFCLTGSFGLSRNLTTAEIVNQVCAVKR-------------------DQPVSNIV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N + V  ++ I +D  G  FS R++T+STSG VP +A +G    V LA+SL
Sbjct: 153 FMGMGEPLANLNGVIPAVQILTDPDGFQFSTRKVTVSTSGLVPEMAELGRGCTVNLAVSL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           +A ++++R+ ++P+NR+YPL  L+ AC+ +P  S    IT EYVM++ +NDS  DA  L+
Sbjct: 213 NATTDEVRSRIMPVNRRYPLAELLAACKAFPLPSRRW-ITMEYVMIRDLNDSLEDAKRLV 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++  IP+K+NLIPFN   GC++ C  Q+ I  F + +     +   R+ RG DI AACG
Sbjct: 272 RLISNIPSKVNLIPFNEHEGCDFKCPTQESIDRFHKYLLDKNVTVITRSSRGSDISAACG 331

Query: 364 QLKSLSKRIPKVPRQ 378
           QLK    +     R 
Sbjct: 332 QLKGRLDQGDGERRD 346


>gi|154505950|ref|ZP_02042688.1| hypothetical protein RUMGNA_03492 [Ruminococcus gnavus ATCC 29149]
 gi|153793968|gb|EDN76388.1| hypothetical protein RUMGNA_03492 [Ruminococcus gnavus ATCC 29149]
          Length = 346

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/370 (31%), Positives = 198/370 (53%), Gaps = 29/370 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +     E+L   + +IG      + R  QI++W++V+    F+ M+++S+ +R  L 
Sbjct: 2   KKDIRAYTYEQLAAEMEQIG----EKKFRAKQIYEWLHVKLADSFEEMTNLSKALREKLE 57

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             + I+  ++++ +IS  D T K+L +     +     +E+V +  K   ++C+SSQVGC
Sbjct: 58  AEYEILPVKMLERQISKIDATNKFLFQLSDGNV-----VESVLMRYKHGNSVCISSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    L RNL+  E+L Q+   + + G+                 ++SN+V+
Sbjct: 113 RMGCRFCASTIGGLERNLSPSEMLGQIYQIQKITGE-----------------RVSNVVV 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
           MG GEP+ N++N    + + +D  GL  S+R +T+ST G VP I  +  E + + LA+SL
Sbjct: 156 MGTGEPMDNYENFLTFVRMLTDEHGLHISQRNLTVSTCGIVPKIRELAMEHLQITLALSL 215

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H  + + R  L+P+  KY L+ ++ AC  Y   +   R+TFEY ++ G+ND+  DA  LI
Sbjct: 216 HGSTQEKRKQLMPVANKYDLQEVLKACDFYFQETGR-RVTFEYSLVHGVNDTQEDAEELI 274

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ILK     +NLIP NP    ++    +K+ + F   +++SG +  IR   G DI  ACG
Sbjct: 275 GILKSRNCHLNLIPVNPIKERDFQQPSRKNALNFKNKLEKSGINVTIRREMGADIDGACG 334

Query: 364 QLKSLSKRIP 373
           QL+    +  
Sbjct: 335 QLRRRYVKTE 344


>gi|297584286|ref|YP_003700066.1| radical SAM enzyme, Cfr family [Bacillus selenitireducens MLS10]
 gi|297142743|gb|ADH99500.1| radical SAM enzyme, Cfr family [Bacillus selenitireducens MLS10]
          Length = 358

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 212/379 (55%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K S+ G+   ELE+     G      + R  Q+W W+YV+ IRDF  M++I ++   L
Sbjct: 1   MNKTSIYGLTFNELEDWFEGKG----EKKFRAKQVWDWLYVKRIRDFDDMTNIKKDTISL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           +  HF +   E+  ++ S DGT+K+L +     +     IETV +      ++CV++QVG
Sbjct: 57  IKDHFYLESLELHSKQESKDGTKKFLFKLSDGNL-----IETVLMKFDYGNSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+LT+ EI+ Q+L  +  + D                 ++S+IV
Sbjct: 112 CNIGCSFCASGLLKKDRDLTSAEIVEQILKVQFDMDD------------KQTEERVSHIV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DN+   L I +   GL+   R IT+STSG V  I    +E + V LA+S
Sbjct: 160 VMGIGEPFDNYDNLMSFLRIVNSDRGLAIGARHITVSTSGLVEKIRAFADENLQVNLAVS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +NDLR+ ++ IN+  P+E ++ A  +Y   +N  RIT EY++L G+ND P  A  L
Sbjct: 220 LHAPNNDLRSSIMKINKGQPIEDVMSAIDYYLEKTNR-RITLEYILLDGVNDKPEHAKEL 278

Query: 303 IKILKGIP--AKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++++       INLIP+NP     +Y  S++  I+TF + + ++G    +R  +G DI 
Sbjct: 279 AELVRDKKKLTYINLIPYNPVDEYIQYKQSEKGAILTFYDLLMKNGVQCGVRHEQGSDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +  +   +
Sbjct: 339 AACGQLRSKQMKKDREKAK 357


>gi|306827020|ref|ZP_07460318.1| cfr family radical SAM enzyme [Streptococcus pyogenes ATCC 10782]
 gi|304430766|gb|EFM33777.1| cfr family radical SAM enzyme [Streptococcus pyogenes ATCC 10782]
          Length = 359

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 207/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G      + R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 2   KPSIYSLTRDELIAWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DSFCVNPLKQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L + EI  Q++L +    D               G ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV   L + +D  GL+   R IT+STSG    I     E +   LA+SLH
Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQANLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ +NR +PLE L  A  +Y   +N  R+TFEY+ML  +NDS + A  L  
Sbjct: 221 APNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279

Query: 305 ILK--GIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSKTMKKDR 352


>gi|51245787|ref|YP_065671.1| hypothetical protein DP1935 [Desulfotalea psychrophila LSv54]
 gi|81641926|sp|Q6ALW1|RLMN_DESPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|50876824|emb|CAG36664.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 362

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 156/365 (42%), Positives = 218/365 (59%), Gaps = 17/365 (4%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  L  + +++L E   K+G P      R  QI  W+Y   +RDF+ M+D+++  R LL
Sbjct: 10  EKIDLKNLSQDQLVEFAEKLGQPA----FRGRQIMSWLYRPEVRDFEQMTDLAKVFRKLL 65

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            ++    + +    + + DG  K+  R     +     IETV IPE  R TLC+SSQVGC
Sbjct: 66  AENSFFSHFDDPIIERAKDGCVKFGFRLHDGHV-----IETVLIPEPDRNTLCISSQVGC 120

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C+FC TG     RNLT  EI+ QV  AR  L + P  + I          +++N+V 
Sbjct: 121 AMKCTFCMTGGMGFTRNLTPSEIVNQVCAARDFLANEPADKLI-------GPDRVTNVVY 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  S+SI ++  GL  + RRIT+ST G V N+AR+G+E  V LAISLH
Sbjct: 174 MGMGEPLNNLENVLTSISILTEQKGLDLTGRRITVSTCGIVANMARLGQEAPVNLAISLH 233

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV +  R++L+P+N +YPL+ L++ACR YP +   RRI FEY+ML GINDS  +A  L +
Sbjct: 234 AVDDKTRDMLMPVNNRYPLDELLEACRTYP-MGKRRRIMFEYIMLAGINDSDTEARTLAR 292

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            L+ IP KINLIP+N  PG  Y     K I++F   ++ + YS  IR  RG DI AACGQ
Sbjct: 293 KLQEIPCKINLIPYNESPGLPYKSPGMKRILSFQNILREANYSVFIRNSRGEDIAAACGQ 352

Query: 365 LKSLS 369
           L +  
Sbjct: 353 LATDE 357


>gi|323705502|ref|ZP_08117077.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535404|gb|EGB25180.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 343

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 143/364 (39%), Positives = 204/364 (56%), Gaps = 31/364 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  M  +ELE+  L IG      + R  Q+++WIY RGI +F  M+DI +++R  L  
Sbjct: 2   IDLKNMTIDELEKFFLDIG----ETKYRAKQVFRWIY-RGITNFDDMTDIKKDLRQKLKN 56

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              I   +I  + +S  DGT K+L       I     +E V I      T C+S+QVGC+
Sbjct: 57  MAFISNLQIAKKVVSSEDGTAKYLFLLDDENI-----VEGVAIKYSFGNTSCISTQVGCN 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +G    VRNL A E++ +VL+     G                  KISNIV+M
Sbjct: 112 MRCSFCASGIGGKVRNLKASEMVDEVLIMNKDYG------------------KISNIVLM 153

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEP  N+D V K + I ++  G+    R IT+ST G VP I +  +E +GV L+ISLH
Sbjct: 154 GSGEPFDNYDEVMKFIKIVNNPFGMGIGVRHITISTCGIVPKIYKFADEGLGVNLSISLH 213

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++DLR+ L+PIN+ YP++ LIDACR+Y   ++  RITFEY ++K +NDS   +L L  
Sbjct: 214 APTDDLRSQLMPINKVYPIKDLIDACRYYIDKTHR-RITFEYSLIKSVNDSYDMSLKLSN 272

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+   +NLIP N      Y  +D + I+ F   ++RSG +  +R   G DI AACGQ
Sbjct: 273 LLKGLLCHVNLIPVNYVSEIGYEKADNEKIMAFKNVLERSGITCTVRRELGSDIDAACGQ 332

Query: 365 LKSL 368
           L+  
Sbjct: 333 LRRK 336


>gi|237650461|ref|ZP_04524713.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
           CCRI 1974]
 gi|237821909|ref|ZP_04597754.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
           CCRI 1974M2]
          Length = 361

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 209/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELTE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|225181331|ref|ZP_03734775.1| radical SAM enzyme, Cfr family [Dethiobacter alkaliphilus AHT 1]
 gi|225167912|gb|EEG76719.1| radical SAM enzyme, Cfr family [Dethiobacter alkaliphilus AHT 1]
          Length = 347

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 192/366 (52%), Gaps = 25/366 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+ +   EL+E    +G P      R  Q+  W+Y +G + F  M+++ + +R  
Sbjct: 1   MDKVNLLELSTSELQEFFQSLGQPA----FRAKQVMDWLYQQGAQTFNEMTNLPKGLREQ 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q     +  +V E++S DGT K+L   P         +ETV +P     + C+S+QVG
Sbjct: 57  LAQKAVPGFLSVVTEQVSEDGTEKYLFALPD-----GQTVETVVLPYDIGFSACISTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +G    VRNLTA EI+ QVL  ++               +   G+++ ++V
Sbjct: 112 CKMGCLFCASGLPGFVRNLTAAEIMAQVLQVKN--------------ALRKRGKELKSLV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG GEPL NF      L    D   L+ S R +TLSTSG VP I  + +    + LA+S
Sbjct: 158 LMGSGEPLDNFRETIAFLEAVRDPQKLAMSLRHVTLSTSGLVPKIEELAKLGWPLNLAVS 217

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N +R+ ++P+N+ YPLE L+ AC  Y   +   R+T+EY+++  +ND    A  L
Sbjct: 218 LHASNNRVRDKIMPVNKTYPLEPLLSACDTYSRATGR-RVTYEYILIDRLNDKTEHAKEL 276

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LKG    +NLIP N         S Q  +  F + +++ G +  +R   G DI AAC
Sbjct: 277 ASLLKGRLCHVNLIPLNAVDELGLKPSPQNTVKQFRDTLRQKGVNVTVRRKLGADIAAAC 336

Query: 363 GQLKSL 368
           GQL++ 
Sbjct: 337 GQLRNE 342


>gi|291527115|emb|CBK92701.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium rectale M104/1]
          Length = 354

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 208/378 (55%), Gaps = 31/378 (8%)

Query: 1   MNFLKKE--SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
           M  +K++   +  M  +EL E ++ +G      + R  QI++WI+V+ +  F  M++IS+
Sbjct: 1   MEQIKEQLTDIKSMNMDELTEFIISLG----EKKFRAKQIYEWIHVKHVESFDEMTNISK 56

Query: 59  EVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
           +   +L  +  +I  +  + ++S  DGTRK+L       +     IE+V +  K   ++C
Sbjct: 57  KFIQVLKDNAILISLKKEEVQVSKLDGTRKYLFALDDGNV-----IESVLMKYKHGNSVC 111

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +SSQVGC + C FC +    LVR L   E++ Q+      +G+                 
Sbjct: 112 ISSQVGCRMGCRFCASTLDGLVRGLRPSEMIDQIYQIGKDIGE----------------- 154

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
           +ISN+V+MG GEPL N+DN+ + + + +D  G++ S+R +T+ST G VP + ++ +E + 
Sbjct: 155 RISNVVVMGTGEPLDNYDNLLRFIELLTDENGINISQRNLTVSTCGLVPRMRQLADEKLS 214

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LA+SLHA + + R  L+P+   Y +  ++DAC++Y   +   R+TFEY ++ G+ND+ 
Sbjct: 215 ITLALSLHASNQEKRKALMPVANSYDIHDVVDACKYYFAQTGR-RVTFEYSLVGGVNDTA 273

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
            DA  L  ++ G+   INLIP NP    +Y+ S++  I  F   ++++G +  IR   G 
Sbjct: 274 EDAAELSALVHGMNCHINLIPVNPIKERDYVQSNKGVIEAFKNRLEKNGINVTIRREMGR 333

Query: 357 DILAACGQLKSLSKRIPK 374
           DI  ACGQL+       +
Sbjct: 334 DIDGACGQLRKKHIDKER 351


>gi|255505596|ref|ZP_05347103.3| radical SAM enzyme, Cfr family [Bryantella formatexigens DSM 14469]
 gi|255266841|gb|EET60046.1| radical SAM enzyme, Cfr family [Bryantella formatexigens DSM 14469]
          Length = 354

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 200/367 (54%), Gaps = 29/367 (7%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           + + ++ L  +  EEL+  L  +G        R  QI++W++ +     Q M+++  ++R
Sbjct: 4   DGMNRKDLRSLGYEELQRELEALG----EKPFRAKQIYQWLHEKLADGVQEMTNLPAKLR 59

Query: 62  HLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             L+  +     E+VD   S  DGTRK+L R     +     IE+V +      ++C+SS
Sbjct: 60  ETLDVRYLCSSLEMVDVLESKADGTRKYLFRLQDGNV-----IESVLMKYHHGNSVCISS 114

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC +    L R+L   E+L Q+   +   G+                 ++S
Sbjct: 115 QAGCRMGCRFCASTLGGLTRSLLPGEMLDQIYKIQKHSGE-----------------RVS 157

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           N+V+MG GEPL N++N+ K + + SD  GL+ S+R IT+ST G VPNI R+  E++ + L
Sbjct: 158 NVVVMGTGEPLDNYENLVKFIHMLSDEHGLNISQRNITVSTCGIVPNIYRLAAEKLQITL 217

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA + + R  L+PI RKY L  +++ACR Y   +   R+TFEY ++ G+NDS  DA
Sbjct: 218 ALSLHAPTQEKRMELMPIARKYELSEVMEACRAYFRETGR-RLTFEYSLVGGVNDSQEDA 276

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L  +L G+   +NLIP NP     ++ S+++ I  F   +++ G +  IR   G DI 
Sbjct: 277 RELAVLLDGLNCHVNLIPVNPIKERSFVQSERRVIADFKTKLEKYGINVTIRREMGRDIG 336

Query: 360 AACGQLK 366
            ACGQL+
Sbjct: 337 GACGQLR 343


>gi|224541738|ref|ZP_03682277.1| hypothetical protein CATMIT_00910 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525342|gb|EEF94447.1| hypothetical protein CATMIT_00910 [Catenibacterium mitsuokai DSM
           15897]
          Length = 343

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 206/366 (56%), Gaps = 28/366 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +S+  +  E+L+E L  +G        R  QI++WIYV+ + DF  M+++S+E++  L+ 
Sbjct: 3   KSIYDLTLEQLKEELKAMG----QKPFRAKQIYEWIYVKNVYDFHQMTNLSKELQETLSN 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           HFS     I +++++ DGT K+LL      +     IETV + +    +LCV+SQ+GC++
Sbjct: 59  HFSDALLTIKEKQVARDGTTKYLLELEDGGL-----IETVLMIQTYGRSLCVTSQLGCNM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +G  K  RNLT+ EI+ QVL                   +  +  +++++V+MG
Sbjct: 114 GCSFCASGLLKKQRNLTSGEIVKQVLTV-----------------MNDLKERVTHVVVMG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+D V   +   ++  GL+   R +T+ST G +P I R   E I V LAISLHA
Sbjct: 157 TGEPFDNYDEVMNFIYTVNEPHGLAIGARHLTISTCGLIPGIERFSHEPIQVNLAISLHA 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN L+PIN++Y ++ L DA + Y   +N  R+T EY++LK +ND  + A  L   
Sbjct: 217 PNDEIRNELMPINKRYNMDDLRDAIKTYIERTNR-RVTLEYILLKDVNDDIKYARQLAHY 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+   +NLIP+NP     Y  S    I  F + + R   +  +R   G DI  ACGQL
Sbjct: 276 LRGLNVYVNLIPYNPVDEHGYKQSLGHTITAFKDELIRLHINCTLRKEHGRDIDGACGQL 335

Query: 366 KSLSKR 371
           ++  ++
Sbjct: 336 RAKREK 341


>gi|167760434|ref|ZP_02432561.1| hypothetical protein CLOSCI_02808 [Clostridium scindens ATCC 35704]
 gi|167661933|gb|EDS06063.1| hypothetical protein CLOSCI_02808 [Clostridium scindens ATCC 35704]
          Length = 357

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 203/369 (55%), Gaps = 29/369 (7%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            + K+ +     EEL+E + +IG        R++QI++W++V+    F  M+++S+E+R 
Sbjct: 1   MMSKKDICSYSFEELKEEIARIG----EKDFRSTQIYEWLHVKLAESFDEMTNLSKELRE 56

Query: 63  LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            L + + I   +++D +IS  D T K+L       +     IE+V +      ++C+SSQ
Sbjct: 57  KLKEEYEIAKVKMIDHQISKVDPTEKFLFELCDGNM-----IESVLMKYNYGNSVCISSQ 111

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC +    L R+L   E+L Q+   + + G+                 ++SN
Sbjct: 112 AGCRMGCRFCASTIGGLERSLAPSEMLRQIYQIQKMTGE-----------------RVSN 154

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           +V+MG GEPL N+DN  K + I SD  GL  S+R IT ST G VPN+ R+ +E + + LA
Sbjct: 155 VVVMGTGEPLDNYDNFVKFIHILSDEHGLHISQRNITASTCGIVPNMKRLADEGLQITLA 214

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLH  + + R  L+P+  +Y L  ++DAC +Y   +   RITFEY +++G+ND   DA 
Sbjct: 215 LSLHGSTQEKRKRLMPVADRYELPEVLDACDYYFEKTGR-RITFEYSLVEGVNDQMEDAR 273

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI IL+     +NLIP NP    ++   D+K+ + F   ++++G +  IR  RG DI  
Sbjct: 274 ELISILRKRNCHLNLIPVNPIKERDFKKPDRKNALEFKNKLEKNGINVTIRRERGSDIDG 333

Query: 361 ACGQLKSLS 369
           ACGQL+   
Sbjct: 334 ACGQLRRRH 342


>gi|255525649|ref|ZP_05392582.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7]
 gi|296185409|ref|ZP_06853819.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7]
 gi|255510635|gb|EET86942.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7]
 gi|296050243|gb|EFG89667.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7]
          Length = 349

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 205/368 (55%), Gaps = 29/368 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++ +  EEL++ +   G  +     R  Q++ WIY     DF+ M ++ +  +  L + 
Sbjct: 3   NILDLSLEELKQWMKDNGESE----FRAKQVFHWIYKNNQWDFEKMDNLPKGTKEKLIKC 58

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F I  P+I++   S  D T K+L  +    I     IETV +  K   ++CVS+QVGC +
Sbjct: 59  FEIDIPQIIEVYKSENDDTHKFLYEYKDGNI-----IETVVMKYKHGNSICVSTQVGCRM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +  + +VRNL++ EI+ Q+L A+  +G+                 +ISNIV+MG
Sbjct: 114 GCKFCASTVEGMVRNLSSGEIIAQILKAQEKIGE-----------------RISNIVLMG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
            GEPL N++NV K LS+ +    L+  +R ITLST G VP I  + + +  + LAISLHA
Sbjct: 157 SGEPLDNYENVIKFLSLVNAEYCLNIGQRHITLSTCGIVPKIKELADKDYQITLAISLHA 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  ++PI  KY +  +I+AC++Y   +N  RITFEY ++K +NDS + A  L+K+
Sbjct: 217 ANDELRKTMMPIANKYSINEIIEACKYYISKTNR-RITFEYALVKDVNDSAQSAEELVKL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGI   +NLIP N      +  S   +I  FS  + + G  + IR   G DI AACGQL
Sbjct: 276 LKGILCHVNLIPVNKVRENNFEKSPTNNIKNFSNILIKKGIETTIRREMGSDINAACGQL 335

Query: 366 KSLSKRIP 373
           +    +  
Sbjct: 336 RRSYLKSK 343


>gi|317501928|ref|ZP_07960112.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896608|gb|EFV18695.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 348

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 196/367 (53%), Gaps = 29/367 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +     EEL++ L ++G        R  QI++W++V+    F  M+++S ++R  L 
Sbjct: 2   KKDIRAYEYEELQKELERLG----EKPFRAKQIYEWLHVKLADRFDEMTNLSVKLREKLA 57

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + + I   ++ + + S  DGT K+L R     +     +E+V +  K   ++C+SSQ GC
Sbjct: 58  EEYDIFPVQMAERQQSKLDGTNKFLFRLYDGNM-----VESVLMRYKHGNSVCISSQAGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    L RNL+A E+L Q+   + ++G+                 ++SN+V+
Sbjct: 113 RMGCVFCASTIGGLKRNLSASEMLGQIYQIQKIIGE-----------------RVSNVVI 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG GEPL N++N  K + I +D  GL+ S+R +T+ST G VP I  + EE + + LA+SL
Sbjct: 156 MGTGEPLDNYNNFLKFIHILTDEHGLNISQRNVTVSTCGIVPKILELAEERLQITLALSL 215

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H  + + R  L+P+  KY L  ++ AC  Y   +   R+TFEY ++  +ND+  DA  L 
Sbjct: 216 HGSTQEKRRKLMPVANKYELGEVLSACDTYFKKTGR-RVTFEYSLVHEVNDTDEDAKELS 274

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L      +NLIP NP     +    +K  + F   +++SG +  IR   G DI  ACG
Sbjct: 275 ELLAPRNCHLNLIPVNPVKERSFQRPSRKSALNFKNKLEKSGINVTIRREMGSDIDGACG 334

Query: 364 QLKSLSK 370
           QL+   +
Sbjct: 335 QLRRRYE 341


>gi|159900818|ref|YP_001547065.1| ribosomal RNA large subunit methyltransferase N [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|205829775|sp|A9AY55|RLMN_HERA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|159893857|gb|ABX06937.1| radical SAM enzyme, Cfr family [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 363

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 200/363 (55%), Gaps = 15/363 (4%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++  +  + L   L ++G P      R  QI+  +Y +   DF  M+D+   +R  L  +
Sbjct: 2   NIYDLDLKGLTAQLTELGQPA----FRARQIYAHLYKKLANDFAAMTDLPAALREQLTAN 57

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGCS 125
             I   E+V E+ + DG TRK L R P   +     IETV +     R T+CVS+Q GC+
Sbjct: 58  LQIGSLELVREQTTDDGLTRKVLWRCPGDAV-----IETVLMIYPPDRATICVSTQAGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L+RN+++ EI+ QVL     L +      I       V   I+N+V M
Sbjct: 113 MGCVFCATGKLGLLRNISSGEIMEQVLYFERYLRNEGAA--IAKRHGGPVPDHITNLVFM 170

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEP  N++    ++   +D  G +   R +T+ST G V  I ++ +E + V LA+SLH
Sbjct: 171 GMGEPFANYERWWAAVERLNDKQGFNLGARNMTVSTVGLVKGIRQLADEALQVNLAVSLH 230

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR+ L+P+N ++ +  L+DA R+Y   ++  R++FEYV+L   ND+P  A  L  
Sbjct: 231 APNDQLRSELMPVNDRFDISDLMDAIRYYTDKTHR-RVSFEYVLLDDKNDTPELAAQLAS 289

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++KG+   +NLIP+NP PG     S ++ +  F   ++ +G S  +R  RG++I AACGQ
Sbjct: 290 LVKGMLCHVNLIPWNPIPGTPLTRSHRERVTAFQRVVQAAGISCTVRVERGVEIAAACGQ 349

Query: 365 LKS 367
           L +
Sbjct: 350 LAA 352


>gi|282600947|ref|ZP_05980240.2| radical SAM enzyme, Cfr family [Subdoligranulum variabile DSM
           15176]
 gi|282570117|gb|EFB75652.1| radical SAM enzyme, Cfr family [Subdoligranulum variabile DSM
           15176]
          Length = 345

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 131/364 (35%), Positives = 202/364 (55%), Gaps = 28/364 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  L      EL   ++ +G P    + R  QI+KW++ + + +F  M+D  + +  +
Sbjct: 1   MRKICLSDYTLAELTAYIVGLGQP----KFRAKQIFKWLHQKLVTEFTQMTDQPKTLLAV 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +  +I  P I  ++ S DGT K+LL+           IETV +  K   T+CVS+QVG
Sbjct: 57  LEEQCTIAVPTIRRKQQSKDGTVKYLLQL-----ADGNCIETVLMRYKYGNTVCVSTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC +     VR+LTA EI  ++  A+   G+                 ++S+IV
Sbjct: 112 CAMGCRFCASTQAGRVRDLTAGEIAAEIYTAQKDSGE-----------------RVSHIV 154

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEPL NFDNV   L I S   G++   R I+LST G VP I  +    + + L++S
Sbjct: 155 LMGIGEPLHNFDNVMDFLEIISCPEGVNIGMRNISLSTCGLVPKIDELAKRHLQLTLSVS 214

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  N  R+ ++P+N  YPLE LI ACR Y   +   RI+FEY M++G+NDS   A  L
Sbjct: 215 LHAPDNVTRSGMMPVNDAYPLEELIPACRRYQKETGR-RISFEYSMVRGVNDSSEMAQKL 273

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +++ G+ A +NLIP NP  G  Y  +D+ ++  F + ++  G ++ +R   G DI AAC
Sbjct: 274 ARLIHGMGAHVNLIPINPVDGSPYSATDEANVRRFQQELEHLGVNATVRRRLGTDISAAC 333

Query: 363 GQLK 366
           GQL+
Sbjct: 334 GQLR 337


>gi|148989849|ref|ZP_01821143.1| hypothetical protein CGSSp6BS73_01643 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147924791|gb|EDK75875.1| hypothetical protein CGSSp6BS73_01643 [Streptococcus pneumoniae
           SP6-BS73]
          Length = 361

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV       +D  G++   R I +STSG    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHIMISTSGLAHKIRDFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|223984316|ref|ZP_03634459.1| hypothetical protein HOLDEFILI_01753 [Holdemania filiformis DSM
           12042]
 gi|223963716|gb|EEF68085.1| hypothetical protein HOLDEFILI_01753 [Holdemania filiformis DSM
           12042]
          Length = 347

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 208/368 (56%), Gaps = 25/368 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +++       LEE +L +G      + R  QI++W+Y +    F  M+D+S+E+   L +
Sbjct: 2   KTIYDYSYSGLEELVLSLGW----KKYRADQIFQWLYRKHATSFDQMTDLSKEMIAALKE 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F I   ++V++++S DGT K+L        G    +E V +      +LCV+SQ+GC++
Sbjct: 58  QFCINPIQLVEKQVSRDGTVKFLFEL-----GDGALVECVLMTYNYGRSLCVTSQIGCNM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +G  K  R+LT+ E++ QV+  +              + +     +IS++V+MG
Sbjct: 113 GCTFCASGLLKKQRDLTSGEMVAQVMTVQ--------------LELDKEEDRISHVVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
            GEP  N+DNV    +  +   GL+   R IT+STSG +P+I R   E     LAISLHA
Sbjct: 159 TGEPFDNYDNVLNFCNTINHDKGLAIGARHITISTSGLIPSIDRFAAEHKQYNLAISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR+ ++P+N+ YPL  L+   R Y  + N RR+TFEY++L+G+ND+   A+ L  +
Sbjct: 219 PTDELRSRIMPVNKAYPLGPLMACLRRY-SVENNRRLTFEYILLQGVNDTNEMAVKLAAL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++G+ A +NLIP+N      Y  +D K  + F + + + G  + +R   G DI AACGQL
Sbjct: 278 IRGMNAYVNLIPYNQVDENGYKSTDYKSAMRFYDVLMKQGVKATLRQEHGNDIDAACGQL 337

Query: 366 KSLSKRIP 373
           ++  +R+ 
Sbjct: 338 RAKHERMR 345


>gi|291541044|emb|CBL14155.1| 23S rRNA m(2)A-2503 methyltransferase [Roseburia intestinalis
           XB6B4]
          Length = 349

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 195/366 (53%), Gaps = 29/366 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  +  M  EEL+  +  IG        R  Q+++W++ +    F  M+++S+ ++  L
Sbjct: 4   EKTDIKSMNLEELKSYMESIG----EKPFRAKQLYQWMHEKQAASFDEMTNLSKSIQEKL 59

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +    +  +    +IS  DGTRK+L       +     IE+V +  K   ++C+SSQVG
Sbjct: 60  KKECHFVSLKQEAVQISKIDGTRKYLFALDDGNV-----IESVLMRYKHGNSVCISSQVG 114

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +    LVR LT  E+L Q+       G+                 +++N+V
Sbjct: 115 CRMGCRFCASTLDGLVRGLTPSEMLDQIYRITRDTGE-----------------RVANVV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG GEP+ NFDN+ + + + +D  GL+ S+R +T+ST G VP +  + ++ + + LA+S
Sbjct: 158 VMGTGEPMDNFDNLLRFIELLTDENGLNISQRNVTVSTCGIVPKMRELADKKLQITLALS 217

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA S + R  L+P+  KY +  +I+ACR+Y   +   R+TFEY ++ G+ND+  D   L
Sbjct: 218 LHASSQEKRLELMPVANKYEIHEVIEACRYYFEQTGR-RVTFEYSLVGGVNDTDEDVRRL 276

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++ G+   +NLIP NP     Y+  D + I+ F   ++++  +  IR   G DI  AC
Sbjct: 277 ADLIHGMNCHVNLIPVNPIKERSYVQPDHEAILNFKNRLEKNAINVTIRREMGRDIDGAC 336

Query: 363 GQLKSL 368
           GQL+  
Sbjct: 337 GQLRKR 342


>gi|94988886|ref|YP_596987.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS9429]
 gi|94992778|ref|YP_600877.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pyogenes MGAS2096]
 gi|122986917|sp|Q1JAS5|RLMN_STRPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123382514|sp|Q1JKX6|RLMN_STRPC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|94542394|gb|ABF32443.1| radical SAM family enzyme [Streptococcus pyogenes MGAS9429]
 gi|94546286|gb|ABF36333.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS2096]
          Length = 359

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+EL    ++ G      + R +QIW W+Y + ++ F+ M++IS++   +LN
Sbjct: 2   KPSIYSLTRDELIAWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DSFCVNPLKQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L + EI  Q++L +    D               G ++S++V+M
Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ NV   L + +D  GL+   R IT+STSG    I     E + V LA+SLH
Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +NDLR+ ++ +NR +PLE L  A  +Y   +N  R+TFEY+ML  +NDS + A  L  
Sbjct: 221 APNNDLRSRIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279

Query: 305 ILK--GIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + K     + +NLIP+NP    + Y  S ++ ++ F + +K++G +  +R   G DI AA
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSLKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSKTMKKDR 352


>gi|148997156|ref|ZP_01824810.1| hypothetical protein CGSSp11BS70_10350 [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575427|ref|ZP_02721363.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae MLV-016]
 gi|194397178|ref|YP_002037414.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pneumoniae G54]
 gi|307067370|ref|YP_003876336.1| putative Fe-S-cluster redox enzyme [Streptococcus pneumoniae AP200]
 gi|254807215|sp|B5E369|RLMN_STRP4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|147756856|gb|EDK63896.1| hypothetical protein CGSSp11BS70_10350 [Streptococcus pneumoniae
           SP11-BS70]
 gi|183578600|gb|EDT99128.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae MLV-016]
 gi|194356845|gb|ACF55293.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
           G54]
 gi|306408907|gb|ADM84334.1| Predicted Fe-S-cluster redox enzyme [Streptococcus pneumoniae
           AP200]
 gi|332202631|gb|EGJ16700.1| radical SAM superfamily protein [Streptococcus pneumoniae GA41317]
          Length = 361

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 209/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCSSGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELTE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|149003387|ref|ZP_01828276.1| hypothetical protein CGSSp14BS69_05262 [Streptococcus pneumoniae
           SP14-BS69]
 gi|303255819|ref|ZP_07341860.1| hypothetical protein CGSSpBS455_10019 [Streptococcus pneumoniae
           BS455]
 gi|303260232|ref|ZP_07346203.1| hypothetical protein CGSSp9vBS293_03308 [Streptococcus pneumoniae
           SP-BS293]
 gi|303261439|ref|ZP_07347387.1| hypothetical protein CGSSp14BS292_08890 [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264106|ref|ZP_07350027.1| hypothetical protein CGSSpBS397_05867 [Streptococcus pneumoniae
           BS397]
 gi|303266283|ref|ZP_07352174.1| hypothetical protein CGSSpBS457_03820 [Streptococcus pneumoniae
           BS457]
 gi|303268722|ref|ZP_07354512.1| hypothetical protein CGSSpBS458_06844 [Streptococcus pneumoniae
           BS458]
 gi|147758570|gb|EDK65568.1| hypothetical protein CGSSp14BS69_05262 [Streptococcus pneumoniae
           SP14-BS69]
 gi|302597203|gb|EFL64308.1| hypothetical protein CGSSpBS455_10019 [Streptococcus pneumoniae
           BS455]
 gi|302637573|gb|EFL68060.1| hypothetical protein CGSSp14BS292_08890 [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638556|gb|EFL69020.1| hypothetical protein CGSSpBS293_03308 [Streptococcus pneumoniae
           SP-BS293]
 gi|302641782|gb|EFL72139.1| hypothetical protein CGSSpBS458_06844 [Streptococcus pneumoniae
           BS458]
 gi|302644213|gb|EFL74469.1| hypothetical protein CGSSpBS457_03820 [Streptococcus pneumoniae
           BS457]
 gi|302646511|gb|EFL76737.1| hypothetical protein CGSSpBS397_05867 [Streptococcus pneumoniae
           BS397]
          Length = 361

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 209/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  ++ + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV       +D  G++   R IT+S SG    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|149007648|ref|ZP_01831265.1| hypothetical protein CGSSp18BS74_04131 [Streptococcus pneumoniae
           SP18-BS74]
 gi|147760803|gb|EDK67774.1| hypothetical protein CGSSp18BS74_04131 [Streptococcus pneumoniae
           SP18-BS74]
          Length = 361

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQGIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N   +TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRG-VTFEYIMLNEVNDGVEQALELTE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|168484426|ref|ZP_02709378.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042321|gb|EDT50367.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC1873-00]
 gi|332077182|gb|EGI87644.1| radical SAM superfamily protein [Streptococcus pneumoniae GA17545]
 gi|332203922|gb|EGJ17989.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47368]
          Length = 361

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N   +TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRG-VTFEYIMLNEVNDGVEQALELTE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|153815685|ref|ZP_01968353.1| hypothetical protein RUMTOR_01921 [Ruminococcus torques ATCC 27756]
 gi|331088258|ref|ZP_08337177.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145846926|gb|EDK23844.1| hypothetical protein RUMTOR_01921 [Ruminococcus torques ATCC 27756]
 gi|330408502|gb|EGG87968.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 355

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 196/367 (53%), Gaps = 29/367 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +     EEL++ L ++G        R  QI++W++V+    F  M+++S ++R  L 
Sbjct: 9   KKDIRAYEYEELQKELERLG----EKPFRAKQIYEWLHVKLADRFDEMTNLSVKLREKLA 64

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + + I   ++ + + S  DGT K+L R     +     +E+V +  K   ++C+SSQ GC
Sbjct: 65  EEYDIFPVQMAERQQSKLDGTNKFLFRLYDGNM-----VESVLMRYKHGNSVCISSQAGC 119

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    L RNL+A E+L Q+   + ++G+                 ++SN+V+
Sbjct: 120 RMGCVFCASTIGGLKRNLSASEMLGQIYQIQKIIGE-----------------RVSNVVI 162

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG GEPL N++N  K + I +D  GL+ S+R +T+ST G VP I  + EE + + LA+SL
Sbjct: 163 MGTGEPLDNYNNFLKFIHILTDEHGLNISQRNVTVSTCGIVPKILELAEERLQITLALSL 222

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H  + + R  L+P+  KY L  ++ AC  Y   +   R+TFEY ++  +ND+  DA  L 
Sbjct: 223 HGSTQEKRRKLMPVANKYELGEVLSACDTYFKKTGR-RVTFEYSLVHEVNDTDEDAKELS 281

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L      +NLIP NP     +    +K  + F   +++SG +  IR   G DI  ACG
Sbjct: 282 ELLAPRNCHLNLIPVNPVKERSFQRPSRKSALNFKNKLEKSGINVTIRREMGSDIDGACG 341

Query: 364 QLKSLSK 370
           QL+   +
Sbjct: 342 QLRRRYE 348


>gi|288941010|ref|YP_003443250.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
 gi|288896382|gb|ADC62218.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
          Length = 365

 Score =  411 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 157/383 (40%), Positives = 220/383 (57%), Gaps = 28/383 (7%)

Query: 1   MNFLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
           MN    K + + +     E  +  +G            ++KW++  G+ DF  M+D+ + 
Sbjct: 1   MNATSTKPNPLDLDLAGCESLVTALGFKA----FHGRNLFKWMHKHGVVDFDAMTDLPKS 56

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           +R +L +   I  P I+    S DGT KW++            +ETV+IPE  R T+CVS
Sbjct: 57  LRTVLLETVEIRLPRILQTHPSADGTVKWVMELVD-----GQRVETVFIPEGKRSTICVS 111

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC+L C+FC T  Q   RNL+  EI+ QV  A   LG  P                 
Sbjct: 112 SQVGCALECAFCATARQGFNRNLSVAEIIGQVWHAARQLGAAP----------------- 154

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL NF+   K++ +  D +    +K+R+TLSTSG VPNI R+ E   V L
Sbjct: 155 TNVVMMGMGEPLANFEAAVKAMDVMQDDLAYMLAKQRVTLSTSGIVPNIYRLREVSDVSL 214

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +++LR+ LVPINRKYPL  LI AC+HY      R+IT+EYVML GINDSP  A
Sbjct: 215 AVSLHAPNDELRDELVPINRKYPLAELIPACKHYVAGDKRRKITWEYVMLDGINDSPAHA 274

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             LI++L+G+P+K+NLIPFNP+ G ++  S    + TF E + RSG  +  R  RG +I 
Sbjct: 275 KQLIRLLEGVPSKVNLIPFNPFTGSDFGTSPPDRVETFRERLARSGIFAMTRKTRGDEIA 334

Query: 360 AACGQLKSLSK-RIPKVPRQEMQ 381
           AACGQL    + R  ++ R  ++
Sbjct: 335 AACGQLVGRVQDRTGRLGRIRVE 357


>gi|149180610|ref|ZP_01859114.1| hypothetical protein BSG1_16675 [Bacillus sp. SG-1]
 gi|148851763|gb|EDL65909.1| hypothetical protein BSG1_16675 [Bacillus sp. SG-1]
          Length = 358

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 130/375 (34%), Positives = 208/375 (55%), Gaps = 26/375 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+  ++L   +++ G      + R +QIW W+Y + + +F  M +I      L
Sbjct: 1   MEKNSIYGLTIDQLTSWIVENG----EKKFRAAQIWDWLYKKRVTNFADMKNIGANCITL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++F +   +   ++ S DGT K+L +     +     IETV +      ++CV++QVG
Sbjct: 57  LEENFHLGTLKEEIKQESKDGTIKFLFKLQDGNL-----IETVLMKFNYGYSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+L++ EI+ Q++  +              +       ++S+IV
Sbjct: 112 CNIGCSFCASGLLKKNRDLSSGEIVEQIMNVQLH------------LDSKGNDERVSHIV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N+DN+   L + +D  GLS   R IT+STSG    I    +E I V LA+S
Sbjct: 160 VMGIGEPFDNYDNLMDFLRVVNDQKGLSIGARHITVSTSGLANRIYDWADENIQVNLAVS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR  ++ IN+ YPLE L+ A  +Y   +N  RITFEY++L+ +ND   +AL L
Sbjct: 220 LHAPNNELRTQIMKINKAYPLEKLMPAIDYYLEKTNR-RITFEYILLQDVNDHKAEALQL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K+LK     + +NLIP+NP     +Y  S ++ IV F   +   G +  +RT  G DI 
Sbjct: 279 AKLLKNKKHLSYVNLIPYNPVDEHGQYQRSTKEAIVEFYGTLLDQGINCGVRTEHGTDID 338

Query: 360 AACGQLKSLSKRIPK 374
           AACGQL+S   +  K
Sbjct: 339 AACGQLRSKQIKKDK 353


>gi|108757013|ref|YP_631737.1| radical SAM protein [Myxococcus xanthus DK 1622]
 gi|123074312|sp|Q1D6I6|RLMN2_MYXXD RecName: Full=Ribosomal RNA large subunit methyltransferase N 2;
           AltName: Full=23S rRNA m2A2503 methyltransferase 2
 gi|108460893|gb|ABF86078.1| radical SAM enzyme, Cfr family [Myxococcus xanthus DK 1622]
          Length = 378

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/364 (40%), Positives = 205/364 (56%), Gaps = 18/364 (4%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             +  +  E L   + +          R  QI++W++ RG   F  M+D+S+ +R  L  
Sbjct: 24  VDVASLSLEALSRFVTE---ELGERAFRAPQIYRWLHQRGATSFDEMTDLSKVLREKLRA 80

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I+      E  S DGT K+  +           IE+VY+P + R TLCVS+QVGC++
Sbjct: 81  RAEIVPLVKDCELRSTDGTIKYRWKTRD-----GRYIESVYMPTEDRRTLCVSTQVGCAM 135

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TGT  L RNLT  EI+ QV      +    G E +         R +SN+V MG
Sbjct: 136 ACGFCMTGTMGLKRNLTPSEIVAQVHAVNREVRKNEGHETL---------RPLSNLVFMG 186

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF+N+K +LSI     G +FS R IT+ST G VP I R G+E  V LAISL+A 
Sbjct: 187 MGEPLHNFENLKTALSILQSEDGPNFSHRHITVSTVGLVPMIERFGKETDVKLAISLNAS 246

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +++ R+  +P+NRK+ +  L+DACR +P L   RRITFEYV++KG ND+  DA  LI++L
Sbjct: 247 TDEQRSKTMPVNRKWNIAALLDACRKFP-LRQGRRITFEYVLIKGFNDADEDAHRLIELL 305

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KGIP K+NLIP+N  PG  +  + ++    F   +     ++ IR  RG DI  ACGQL 
Sbjct: 306 KGIPVKVNLIPYNENPGLGFHTTGEERAEEFRAILADGHVAAYIRRNRGRDIAGACGQLA 365

Query: 367 SLSK 370
           +  +
Sbjct: 366 NRGE 369


>gi|77919618|ref|YP_357433.1| ribosomal RNA large subunit methyltransferase N [Pelobacter
           carbinolicus DSM 2380]
 gi|123729427|sp|Q3A2Z4|RLMN_PELCD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|77545701|gb|ABA89263.1| 23S rRNA m(2)A-2503 methyltransferase [Pelobacter carbinolicus DSM
           2380]
          Length = 371

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 150/369 (40%), Positives = 214/369 (57%), Gaps = 30/369 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M+   +  L     EEL E L  +G      R R  Q+ +W+Y R + DF  MSD+S+ +
Sbjct: 5   MDQDTRIDLKNFTLEELTEFLAGMG----KERFRAGQVMRWMYHRLVDDFDAMSDLSKVL 60

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVS 119
           R  L+Q   I        + S DGTRK+L R           IE+V IP + +R TLC+S
Sbjct: 61  RAELHQRARISRLTPEATEDSRDGTRKYLFRLED-----GETIESVRIPMDDNRATLCIS 115

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +QVGC++ C FC+TG+  LVRNLT  EI+ QV  A                        +
Sbjct: 116 TQVGCAMGCVFCHTGSFGLVRNLTPGEIVNQVCAA-------------------LADGPV 156

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +NIV+MGMGEPL N DNV K+L I     GL +S R++TLST+G VP +  +G+ + V L
Sbjct: 157 NNIVLMGMGEPLHNLDNVVKALQILYMPQGLDYSPRKVTLSTAGLVPQMQELGKRVRVNL 216

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SL+A ++++RN L+P+N++YPL+ L+ ACR YP L   +RITFEY++++ +NDS +DA
Sbjct: 217 AVSLNATTDEVRNRLMPVNQRYPLQQLMAACRQYP-LHAKKRITFEYILIRDVNDSDQDA 275

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+K+L GI AK+N+IPFN     E+    ++ I  F   +   G  +  R  +G DI 
Sbjct: 276 RRLVKLLHGIKAKVNIIPFNEHSASEFRAPTEERISRFQGYLLDHGMVAIRRASKGQDIS 335

Query: 360 AACGQLKSL 368
           AACGQLK  
Sbjct: 336 AACGQLKGK 344


>gi|15900662|ref|NP_345266.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pneumoniae TIGR4]
 gi|81620462|sp|Q97RN5|RLMN_STRPN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|14972243|gb|AAK74906.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
          Length = 361

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  ++ + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 +IS+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELTE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKECVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|15672161|ref|NP_266335.1| hypothetical protein L184159 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|81621772|sp|Q9CJ27|RLMN_LACLA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|12723031|gb|AAK04277.1|AE006255_7 hypothetical protein L184159 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 365

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 129/376 (34%), Positives = 212/376 (56%), Gaps = 27/376 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + S+ G+ R++L E  ++ G      + R +Q+W W+Y + ++ F+ MS++S      LN
Sbjct: 10  RPSIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAAFIDKLN 65

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF +   E V  + S DGT K+L   P + +     IETV + +    ++CV++QVGC+
Sbjct: 66  EHFILNPLEQVVVQESADGTVKYLFMLPDQMM-----IETVLMRQSYGLSVCVTTQVGCN 120

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R++TA EI+ Q++L +    +              +  ++S++V+M
Sbjct: 121 MGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDE------------RGLDERVSHVVVM 168

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEE-IGVMLAISL 243
           G+GEP  N++++   L + +D  GL+   R IT+ST GF+P  I     E + + LAISL
Sbjct: 169 GIGEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISL 228

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N+LR  L+ I R  PLE L +A  +Y   +N  R+T+EY+ML G NDSP  A  L 
Sbjct: 229 HAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTNR-RVTYEYIMLSGENDSPEIAQQLA 287

Query: 304 KILK--GIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++K     + +NLIP+NP     +Y  S + +   F + +K++G +  +R   G DI A
Sbjct: 288 DLIKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDA 347

Query: 361 ACGQLKSLSKRIPKVP 376
           ACGQL+S   +  K  
Sbjct: 348 ACGQLRSKQIKKNKAK 363


>gi|281490670|ref|YP_003352650.1| radical SAM family enzyme [Lactococcus lactis subsp. lactis KF147]
 gi|281374439|gb|ADA63960.1| Radical SAM family enzyme [Lactococcus lactis subsp. lactis KF147]
          Length = 365

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 129/376 (34%), Positives = 212/376 (56%), Gaps = 27/376 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + S+ G+ R++L E  ++ G      + R +Q+W W+Y + ++ F+ MS++S      LN
Sbjct: 10  RPSIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAAFIDKLN 65

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF +   E V  + S DGT K+L   P + +     IETV + +    ++CV++QVGC+
Sbjct: 66  EHFILNPLEQVVVQESADGTVKYLFMLPDKMM-----IETVLMRQSYGLSVCVTTQVGCN 120

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R++TA EI+ Q++L +    +              +  ++S++V+M
Sbjct: 121 MGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDE------------RGLDERVSHVVVM 168

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEE-IGVMLAISL 243
           G+GEP  N++++   L + +D  GL+   R IT+ST GF+P  I     E + + LAISL
Sbjct: 169 GIGEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISL 228

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N+LR  L+ I R  PLE L +A  +Y   +N  R+T+EY+ML G NDSP  A  L 
Sbjct: 229 HAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTNR-RVTYEYIMLSGENDSPEIAQQLA 287

Query: 304 KILK--GIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++K     + +NLIP+NP     +Y  S + +   F + +K++G +  +R   G DI A
Sbjct: 288 DLIKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDA 347

Query: 361 ACGQLKSLSKRIPKVP 376
           ACGQL+S   +  K  
Sbjct: 348 ACGQLRSKQIKKNKAK 363


>gi|317121759|ref|YP_004101762.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter marianensis
           DSM 12885]
 gi|315591739|gb|ADU51035.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter marianensis
           DSM 12885]
          Length = 448

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 127/361 (35%), Positives = 198/361 (54%), Gaps = 26/361 (7%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
           G++ EEL   L   G P      R  QI+ W++ RG+  F  M+D+ +++R  L      
Sbjct: 103 GLLPEELGRVLSAWGEPA----YRGRQIFAWLHRRGVTRFAEMTDLPKDLRRRLEALGDP 158

Query: 71  IYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           + P +   ++   DGTRK+LL      +     IETV +  +   +LCVSSQVGC++ C 
Sbjct: 159 VVPAVRRLQVDPQDGTRKYLLELEDGQL-----IETVLMRHRYGLSLCVSSQVGCAMGCR 213

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +    LVRNLTA E+  Q+L+    L +               G+++S++V+MG+GE
Sbjct: 214 FCASTLGGLVRNLTAAEMAGQLLVVNRDLAE--------------RGQRVSHVVVMGIGE 259

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           PL N D   + L +A    G   S R +T+STSG VP I ++    + + LA+SLHA ++
Sbjct: 260 PLQNLDATLQFLRVAHHPQGAGISYRHMTVSTSGLVPRIRQLAHAGLPITLAVSLHAPND 319

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
            LR+ L+P+NR++P+  L+DACR Y   +   RITFEYV+++ +ND P  A  L  ++ G
Sbjct: 320 ALRSWLMPVNRRWPIAELMDACREYVERTGR-RITFEYVLIEDVNDRPEHAAELADLVAG 378

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +   +NLIP+NP     +     + +  F   ++R G +  +R   G  I AACGQL+  
Sbjct: 379 LNGHVNLIPWNPVSERPFRAPSPERVQAFVAALRRRGVNVTVRRELGQRIEAACGQLRRR 438

Query: 369 S 369
           +
Sbjct: 439 A 439


>gi|225858576|ref|YP_002740086.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pneumoniae 70585]
 gi|254807216|sp|C1C6B0|RLMN_STRP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|225721405|gb|ACO17259.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae 70585]
          Length = 361

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N   +TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRG-VTFEYIMLNEVNDGVEQALELTE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|220903723|ref|YP_002479035.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868022|gb|ACL48357.1| radical SAM enzyme, Cfr family [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 386

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 139/371 (37%), Positives = 200/371 (53%), Gaps = 27/371 (7%)

Query: 7   ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
            +L+ +   ELE     ++G P    + R  Q+W+WI+ R  RDF  M++IS+  R LL 
Sbjct: 24  TNLLNLTLPELEAWTQSELGEP----KFRAMQLWQWIWQRMARDFDTMTNISRPCRELLA 79

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120
               I++PE+   + S DGT K+LLR          +IETV IP  S     R T C+S 
Sbjct: 80  AKACIVWPEVSAVEESRDGTTKFLLRLED-----GAQIETVLIPSDSREGVRRWTQCLSC 134

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C+FC TG     RN+T  EIL Q+L+AR  LGD      I           + 
Sbjct: 135 QVGCTMGCTFCSTGQMGFERNMTMGEILGQILVAREHLGDTRLHWPI-----------LR 183

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V MGMGEPL N   V +SL   ++  GL FS RRIT+ST G    +  +GE     LA
Sbjct: 184 NLVFMGMGEPLLNLKEVMRSLESLNNDKGLGFSPRRITVSTCGIEKGLKELGESGLAFLA 243

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +  +R  ++P   ++ L  L+ A + YP L     ITFEY+ML G+NDS   A 
Sbjct: 244 VSLHAPNQAVRERIMPKAARWRLNDLMAALKSYP-LKTREHITFEYLMLGGVNDSLEHAR 302

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L  ++  +  K+N+I +N   G  Y    ++ I+ F + +     ++ IR  +G DI A
Sbjct: 303 ELAPLVSAVKGKLNIIVYNAAEGSPYQAPSEERILAFEKYLWSKDITAIIRKSKGQDIKA 362

Query: 361 ACGQLKSLSKR 371
           ACGQLK+  ++
Sbjct: 363 ACGQLKAARQK 373


>gi|148992431|ref|ZP_01822126.1| hypothetical protein CGSSp9BS68_08432 [Streptococcus pneumoniae
           SP9-BS68]
 gi|168488437|ref|ZP_02712636.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae SP195]
 gi|147928748|gb|EDK79761.1| hypothetical protein CGSSp9BS68_08432 [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572944|gb|EDT93472.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae SP195]
 gi|332073108|gb|EGI83587.1| radical SAM superfamily protein [Streptococcus pneumoniae GA17570]
          Length = 361

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 209/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQGIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +NDS   AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDSVEQALELTE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   +  NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYANLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|326405757|gb|ADZ62828.1| radical SAM family enzyme [Lactococcus lactis subsp. lactis CV56]
          Length = 365

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 129/376 (34%), Positives = 212/376 (56%), Gaps = 27/376 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + S+ G+ R++L E  ++ G      + R +Q+W W+Y + ++ F+ MS++S      LN
Sbjct: 10  RPSIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAAFIDKLN 65

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF +   E V  + S DGT K+L   P + +     IETV + +    ++CV++QVGC+
Sbjct: 66  EHFILNTLEQVVVQESADGTVKYLFMLPDKMM-----IETVLMRQSYGLSVCVTTQVGCN 120

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R++TA EI+ Q++L +    +              +  ++S++V+M
Sbjct: 121 MGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDE------------RGLDERVSHVVVM 168

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEE-IGVMLAISL 243
           G+GEP  N++++   L + +D  GL+   R IT+ST GF+P  I     E + + LAISL
Sbjct: 169 GIGEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISL 228

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N+LR  L+ I R  PLE L +A  +Y   +N  R+T+EY+ML G NDSP  A  L 
Sbjct: 229 HAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTNR-RVTYEYIMLSGENDSPEIAQQLA 287

Query: 304 KILK--GIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++K     + +NLIP+NP     +Y  S + +   F + +K++G +  +R   G DI A
Sbjct: 288 DLIKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDA 347

Query: 361 ACGQLKSLSKRIPKVP 376
           ACGQL+S   +  K  
Sbjct: 348 ACGQLRSKQIKKNKAK 363


>gi|302392191|ref|YP_003828011.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM
           5501]
 gi|302204268|gb|ADL12946.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM
           5501]
          Length = 350

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 144/370 (38%), Positives = 207/370 (55%), Gaps = 24/370 (6%)

Query: 3   FLKKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
              K  LI     ELE  +  ++G        R  QI+ WIY +G  +F+ M+++SQ +R
Sbjct: 1   MTDKAELISFDLTELENFINNELG----EASFRAEQIFNWIYKQGAVNFEEMTNLSQGLR 56

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSS 120
             L     I     +    S DGT K+L            EIETV++P +  R ++CVS+
Sbjct: 57  SRLQSKAYIQQLTEITRAKSEDGTVKFLFELEDNK-----EIETVFLPYQDGRNSICVST 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C+FC TG Q L RNLT  EI+ Q+L  + L+G       +           IS
Sbjct: 112 QVGCGMGCNFCATGQQGLERNLTTGEIVSQILKVQQLMGSNGYDPSL-----------IS 160

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           N+V MGMGEPL N+DN  + + I +    L+ S RRIT+ST G VP I R+ + E+ ++L
Sbjct: 161 NVVFMGMGEPLANYDNFLRVIDILNSEKALNISMRRITVSTCGLVPQIKRLADKELQLVL 220

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           AISLHA  + LR+ ++PIN++YPLE LI AC +Y   +N  RITFEY ++ G+N+  +DA
Sbjct: 221 AISLHAAEDKLRSEMMPINKRYPLEELIAACEYYLQKTNR-RITFEYALVDGVNNRRQDA 279

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++L G+   +NLIP NP         ++K I  F E + R    + +R  RG DI 
Sbjct: 280 EKLAQLLSGLLCHVNLIPVNPVKELGLTRPNRKAIKEFKEILDRHNIQATVRQERGNDIE 339

Query: 360 AACGQLKSLS 369
           AACGQL++ +
Sbjct: 340 AACGQLRTEN 349


>gi|225418643|ref|ZP_03761832.1| hypothetical protein CLOSTASPAR_05867 [Clostridium asparagiforme
           DSM 15981]
 gi|225041830|gb|EEG52076.1| hypothetical protein CLOSTASPAR_05867 [Clostridium asparagiforme
           DSM 15981]
          Length = 368

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 133/385 (34%), Positives = 213/385 (55%), Gaps = 33/385 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +  M  EELE  L ++G        R  QI+ W++V+    F+ M+ IS+E++  L+
Sbjct: 10  KIDIKSMTPEELEAFLKELG----EKPFRAKQIYDWLHVKLAERFEEMTSISKELQRKLD 65

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              S+    +VDEKIS  DGTRK+L       I     IE+V++      ++C+SSQ GC
Sbjct: 66  AACSLTCLRVVDEKISTIDGTRKYLFALADGNI-----IESVWMQYHHGNSVCISSQAGC 120

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    L RNL   E+L Q+   + + G+                 ++SN+V+
Sbjct: 121 RMGCRFCASTLDGLARNLRPSEMLDQIYRIQRITGE-----------------RVSNVVV 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG GEP+ N+DN+ + + + S   GL+ S+R +T+ST G VP I R+ EE   + LA+SL
Sbjct: 164 MGSGEPMDNYDNLVRFIRLISHEKGLNISQRNLTVSTCGLVPEIRRLAEEGFQITLALSL 223

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  +++R  L+PI  +Y L+ ++ ACR+Y   +   R+TFEY ++ G+ND+ R+A  L 
Sbjct: 224 HAPDDEVRKTLMPIANRYCLKDVLAACRYYYQQTGR-RLTFEYSLVHGVNDNLREAAALA 282

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+++     +NLIP NP    +++ S QK+I  F   ++++G +  IR   G DI  ACG
Sbjct: 283 KLIRHEHGHVNLIPVNPIKERDFVQSGQKEIQDFKNLLEKNGINVTIRREMGRDIGGACG 342

Query: 364 QLKS---LSKRIPKVPRQEM-QITG 384
           QL+      ++     R EM + +G
Sbjct: 343 QLRKGFLDEEKAQSGRRDEMTERSG 367


>gi|258406363|ref|YP_003199105.1| ribosomal RNA large subunit methyltransferase N [Desulfohalobium
           retbaense DSM 5692]
 gi|257798590|gb|ACV69527.1| radical SAM enzyme, Cfr family [Desulfohalobium retbaense DSM 5692]
          Length = 359

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 134/366 (36%), Positives = 208/366 (56%), Gaps = 23/366 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++ +++  +  ++L   L + G P    R R  QIW+W++++G   F+ M+++S+ +R  
Sbjct: 1   MRPKTIHDISFDDLAAWLTEQGQP----RFRAEQIWQWLWIKGATSFEDMTNVSKSLRSA 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+Q F I  P + +   S DGTRK+LL      +     +ETV IP     T C+S+QVG
Sbjct: 57  LSQVFPIALPTVAEVHTSADGTRKFLLNLHDGHV-----LETVLIPGGEHFTQCLSTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C+FC TG   L RNL+A EI  QV++AR+ L                 G ++ N+V
Sbjct: 112 CNLGCTFCSTGQMGLTRNLSAAEIAGQVIVARNHLWQT------------GTGMRLRNLV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N++NV  +L     +  ++FS RR+T+ST G    +  +G      LA+SL
Sbjct: 160 FMGMGEPLLNWENVDNALDRLIHASAMNFSPRRVTVSTVGVPGTLDALGHSHKASLAVSL 219

Query: 244 HAVSNDLRNILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           HA + +LR  ++P   +  PL  L+   R YP ++  +R+T EYV+L G+NDS   A  L
Sbjct: 220 HAPNQELREKIMPRAARMLPLPDLLARLRSYP-MAPRQRVTIEYVLLGGVNDSLDQARQL 278

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           ++ L GI  K+NLI FNP PG  Y   + + ++ F   ++  G ++ +R  +G DI AAC
Sbjct: 279 VRCLNGIRCKVNLIAFNPCPGLPYSAPETEQVLAFETLLRDKGLTATLRKSKGQDISAAC 338

Query: 363 GQLKSL 368
           GQLK+ 
Sbjct: 339 GQLKTR 344


>gi|149194715|ref|ZP_01871810.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2]
 gi|149135138|gb|EDM23619.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2]
          Length = 355

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 136/367 (37%), Positives = 213/367 (58%), Gaps = 35/367 (9%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           L E LL++GI     + R  Q++ W+Y + + DF+ MS++ +++R  L + F I   E++
Sbjct: 8   LPEELLELGI---QPKFRVKQLYNWVYRKYVDDFEKMSNLPKDLREKLKKEFYINPLELI 64

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----------RGTLCVSSQVGCS 125
           + +I+ DGT K+L +           IETV I  K            + T+CVS+QVGC 
Sbjct: 65  NHEIASDGTEKFLFKLNDN-----HTIETVLIKMKDDRVENGKKKEAKYTVCVSTQVGCK 119

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC T     VRNL+A EI+ QV   +                      K  N+V M
Sbjct: 120 VGCAFCLTAKGGFVRNLSAGEIVAQVWFMKKFKNFD--------------ENKALNVVFM 165

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N++N+ K++ I + + GL+ + RR T+STSG  P I ++GEE +GV LAISLH
Sbjct: 166 GMGEPLDNYNNLVKAIKIIAHTDGLNIAPRRQTVSTSGIAPKIKKLGEENLGVNLAISLH 225

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV + LR  L+P+N+ Y ++ +I+A R +P +   +++ FEY+++K +ND+   A  L+K
Sbjct: 226 AVDDKLREQLIPLNKAYNIQSVIEAIREFP-IDKRKKVMFEYLVIKDVNDNLDSAKKLVK 284

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L GIP+K+NLI FNP+PG  +   D++ +  F   +   G +  IR  +G+DI AACGQ
Sbjct: 285 LLNGIPSKVNLIYFNPYPGSPFKRPDEETMKKFQRYLLDRGITCTIRQSKGIDISAACGQ 344

Query: 365 LKSLSKR 371
           L+    +
Sbjct: 345 LREKELK 351


>gi|323490277|ref|ZP_08095492.1| ribosomal RNA large subunit methyltransferase N [Planococcus
           donghaensis MPA1U2]
 gi|323395947|gb|EGA88778.1| ribosomal RNA large subunit methyltransferase N [Planococcus
           donghaensis MPA1U2]
          Length = 357

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 210/375 (56%), Gaps = 26/375 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+  ++L+E  L+ G      + R  Q+W W+Y++ + +F  M+++S+E   LL 
Sbjct: 2   KNSIYGLTIDQLKEWFLENG----QKKYRAEQVWDWLYIKRVTEFAEMNNLSKECIQLLE 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F+I   +   ++ S DGT K+L +     +     IETV +  K   ++CV++QVGC+
Sbjct: 58  DNFAIRTLKETVKQESADGTIKFLFQMQDGNL-----IETVLMRFKYGNSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +G  K  R+L A EI+ Q++  ++                     ++S+IV+M
Sbjct: 113 IGCSFCASGLLKKSRDLNAGEIVEQIMQVQAHFD------------TQQKEERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+ N+   L + +   GL+   R IT+STSG VP I    +E + V LAIS+H
Sbjct: 161 GIGEPFDNYTNLMDFLKVVNSQKGLAIGARHITVSTSGIVPKIYDYADEGLQVNLAISIH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR  ++ IN+ YP+E L+ +  +Y   SN  RITFEY++L+ +ND   +A  L K
Sbjct: 221 APTNELRTRIMKINKAYPIEKLMASIDYYLEKSNR-RITFEYILLRDVNDHVEEANQLAK 279

Query: 305 IL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +L  K   + +NLIP+N     + Y  S  + I  F + +K+ G +  +R  +G DI AA
Sbjct: 280 LLEDKRHLSYVNLIPYNSVDEHDQYQQSTPEAISAFYDALKKKGINCGVRHEQGADIDAA 339

Query: 362 CGQLKSLSKRIPKVP 376
           CGQL+S   +  K  
Sbjct: 340 CGQLRSKQIKKDKKE 354


>gi|118578868|ref|YP_900118.1| ribosomal RNA large subunit methyltransferase N [Pelobacter
           propionicus DSM 2379]
 gi|205829797|sp|A1AL40|RLMN_PELPD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118501578|gb|ABK98060.1| 23S rRNA m(2)A-2503 methyltransferase [Pelobacter propionicus DSM
           2379]
          Length = 347

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/367 (40%), Positives = 210/367 (57%), Gaps = 30/367 (8%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K  L  +    LE+ L   G      R R +Q++KWIY    R FQ M++IS+++R 
Sbjct: 1   MTEKTDLKNLTLPALEQFLRGQG----KERFRATQVFKWIYQHDARSFQEMTNISKDLRA 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L     I   E    ++  DGTRK+L             +E+V IP++ R TLC+SSQV
Sbjct: 57  ELEAKAYISNLEPEAVEVGGDGTRKYLFGLED-----GNSVESVLIPDEGRNTLCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C+FC TGT +L RNLT  EI+ Q++  R                      +I NI
Sbjct: 112 GCAMGCAFCLTGTFRLTRNLTTAEIVNQIMAVRR-------------------DVEIRNI 152

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAI 241
           VMMGMGEPL N DNV  ++ I  D  GL  S RR+T+ST G  P + R+G E+  V LA+
Sbjct: 153 VMMGMGEPLHNLDNVIPAIHIMIDGNGLQLSNRRVTVSTCGLAPEMERLGRELPNVNLAV 212

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SL+A +++LR+ ++PINR+YPL+ L+ ACR +P L   R++TFEYVML G+ND+  DA  
Sbjct: 213 SLNATTDELRDRIMPINRRYPLKELLSACREFP-LPGRRKVTFEYVMLGGLNDTLEDAKR 271

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++   IP K+NLIPFN + GCE+    +  I  F + +     +   R  RG DI AA
Sbjct: 272 LLRLTSDIPNKVNLIPFNEFQGCEFRSPTRAAIDAFHKYLIDRHVTVITRDSRGSDISAA 331

Query: 362 CGQLKSL 368
           CGQLK  
Sbjct: 332 CGQLKGK 338


>gi|325261901|ref|ZP_08128639.1| radical SAM enzyme, Cfr family [Clostridium sp. D5]
 gi|324033355|gb|EGB94632.1| radical SAM enzyme, Cfr family [Clostridium sp. D5]
          Length = 345

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 200/365 (54%), Gaps = 29/365 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +     E+L+  +  IG      + R  Q+++W++V+    F  M+++S+E+R  L+
Sbjct: 2   KKDIRAYTYEQLQAEMAAIG----EKKFRAKQLYEWLHVKLAGSFDEMTNLSRELREKLD 57

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + + I+   +++ + S  DGT K+L     + +     +E+V +  K   ++C+SSQVGC
Sbjct: 58  REYEILPVRMLERQESQMDGTNKFLFMLHDQNV-----VESVLMRYKHGNSVCISSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    LVRNL+  E+L Q+   + + G+                 ++SN+V+
Sbjct: 113 RMGCRFCASTIGGLVRNLSPSEMLGQIYEIQKVTGE-----------------RVSNVVI 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG GEPL N++N    + + +D  GL  S+R +T+ST G VP +  + EE + + LA+SL
Sbjct: 156 MGTGEPLDNYENFLCFIRLLTDEHGLHISQRNVTVSTCGIVPKMLELAEENLQITLALSL 215

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H  + + R  L+P+  KY L  ++ AC  Y   +   RITFEY ++ G+ND+  DA  LI
Sbjct: 216 HGTTQEKRKELMPVANKYELSDVLHACDEYFRKTGR-RITFEYSLVHGVNDTDEDAGELI 274

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +ILK     +NLIP NP     ++   +K+ + F   +++SG +  IR   G DI  ACG
Sbjct: 275 RILKPRNCHLNLIPVNPVKERSFVRPSRKNALNFKNKLEKSGINVTIRREMGADIDGACG 334

Query: 364 QLKSL 368
           QL+  
Sbjct: 335 QLRRR 339


>gi|197118042|ref|YP_002138469.1| ribosomal RNA large subunit methyltransferase N [Geobacter
           bemidjiensis Bem]
 gi|197087402|gb|ACH38673.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 351

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 139/374 (37%), Positives = 209/374 (55%), Gaps = 29/374 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  +  +  + LE  +  +G      R R  QI+KW+Y      F+ M+++S+E R +
Sbjct: 1   MQKTDIKNLTLQGLESYISGLG----KERFRAKQIFKWLYQMDAGSFEEMTNVSKEFRVM 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +   I        + S DGTRK+L R           +E+V IP++ R TLC+SSQVG
Sbjct: 57  LGEIAQISNLTPEVVEASEDGTRKYLFRLSD-----GSAVESVLIPDEGRNTLCISSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC TG+  L RNLT  EI+ QV   +                     + ++NIV
Sbjct: 112 CAMGCAFCLTGSFGLSRNLTTAEIVNQVCAVKR-------------------DQPVNNIV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N   V  ++ I +D  G  FS R++T+STSG VP +A +G    V LA+SL
Sbjct: 153 FMGMGEPLANLKGVIPAVQILTDPDGFQFSTRKVTVSTSGLVPEMAELGRGCTVNLAVSL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           +A ++++R+ ++P+NR YPL  L+ AC+ +P  S    IT EYVM++ +NDS  DA  L+
Sbjct: 213 NATTDEVRSRIMPVNRTYPLAQLLAACKAFPLPSRRW-ITMEYVMIRDLNDSLEDAKRLV 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +++  IP+K+NLIPFN   GC++ C  Q+ I  F + +     +   R+ RG DI AACG
Sbjct: 272 RLISNIPSKVNLIPFNEHEGCDFKCPTQESIDRFHKYLLDKNVTVITRSSRGSDISAACG 331

Query: 364 QLKSLSKRIPKVPR 377
           QLK    +     R
Sbjct: 332 QLKGRLDQEDGERR 345


>gi|95929456|ref|ZP_01312199.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
 gi|95134572|gb|EAT16228.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
          Length = 342

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/369 (42%), Positives = 211/369 (57%), Gaps = 30/369 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  L     +EL E L  +G      R R  Q+ +WIY RG+ D   M+D+S+ +R  
Sbjct: 1   MEKLDLKNFSPDELLEFLSGMG----KERFRCEQLLRWIYKRGVTDLDEMTDLSKTLRAE 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122
           L +   I   +    + S DGTRK+L R           IETV IP +  R TLC+SSQV
Sbjct: 57  LKEKSYISDWQPEVVETSADGTRKYLFRL-----DDGQSIETVRIPMDNDRSTLCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C FC TG+   +RNLTA EI+ QV                           I+NI
Sbjct: 112 GCAMDCDFCVTGSFGFIRNLTAAEIVNQVCAVAKEG-------------------SINNI 152

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V+MGMGEPL N DNV ++L I   + G  +S R++TLST G VP +  +GE I V LA+S
Sbjct: 153 VLMGMGEPLHNLDNVVRALKIFYAAAGFDYSSRKVTLSTCGLVPQMKELGERIVVNLAVS 212

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+A +N++R+ L+PINR+YPLE L+DACR +P  S+  RITFEY++++ +NDS  DA  L
Sbjct: 213 LNATTNEVRDKLMPINRRYPLEELMDACRRFPMASHR-RITFEYILIRDLNDSLADAKRL 271

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K++ GI  KINLIPFN   G  Y C DQ  I  F   +      +  R  +G DI AAC
Sbjct: 272 VKLMHGIRGKINLIPFNEHEGSPYRCPDQATIEAFQTYLLNRDIVAIRRASKGQDISAAC 331

Query: 363 GQLKSLSKR 371
           GQLK   ++
Sbjct: 332 GQLKGKLEK 340


>gi|75376338|sp|Q6XK03|RLMN_SPICI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|34396189|gb|AAP55653.1| unknown [Spiroplasma citri]
 gi|110005241|emb|CAK99567.1| conserved hypothetical upf0063 transmembrane protein [Spiroplasma
           citri]
          Length = 345

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 135/370 (36%), Positives = 216/370 (58%), Gaps = 27/370 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+ G  +EEL+  L+  G      +    QI+ WIYV+ I  F  M++IS+  R+ L +
Sbjct: 2   TSIFGYPKEELQLDLVAHGF----KKYLAEQIFDWIYVKNIYSFDEMTNISKTDRNKLQE 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +++I   +IV ++ S D T K+L +          +IETV +P+    ++CV++QVGC++
Sbjct: 58  YYTIEPLKIVVQQQSKDWTVKFLFQL-----ADGYKIETVLMPQSYGNSVCVTTQVGCNM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +G  K  RNL+  EI+ QV++                  + +   ++S+IV+MG
Sbjct: 113 ACTFCASGLLKKTRNLSTAEIVQQVMMVNRY--------------LATTNERVSHIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
           +GEP  NFDN  K ++I +D  G     R IT+ST G VP I +  E +  V LAISLHA
Sbjct: 159 IGEPFDNFDNTLKFVNIINDPKGYQIGARHITISTCGLVPKIKQFAELKTQVNLAISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N +RN L+PIN+ YP+E L+DA R+Y  L+N  R+TFEY++++ +NDS   AL L K+
Sbjct: 219 PNNTIRNQLMPINKAYPVEKLMDAVRYYIELTNR-RVTFEYILIENVNDSRETALELAKL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++G+ A +NLIP+N      +  S +  I  F E +++   +  +R   G DI AACGQL
Sbjct: 278 IRGLNAYVNLIPYNTVAENGHQRSTK--INKFFETLQQQKINCIVRREFGHDIDAACGQL 335

Query: 366 KSLSKRIPKV 375
           ++ ++ + + 
Sbjct: 336 RAKNEGVIRK 345


>gi|291526151|emb|CBK91738.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium rectale DSM
           17629]
          Length = 341

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 202/365 (55%), Gaps = 29/365 (7%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  +EL E ++ +G      + R  QI++WI+V+ +  F  M++IS++   +L  +  +I
Sbjct: 1   MNMDELTEFIISLG----EKKFRAKQIYEWIHVKHVESFDEMTNISKKFIQVLKDNAILI 56

Query: 72  YPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
             +  + ++S  DGTRK+L       +     IE+V +  K   ++C+SSQVGC + C F
Sbjct: 57  SLKKEEVQVSKLDGTRKYLFALDDGNV-----IESVLMKYKHGNSVCISSQVGCRMGCRF 111

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +    LVR L   E++ Q+      +G+                 +ISN+V+MG GEP
Sbjct: 112 CASTLDGLVRGLRPSEMIDQIYQIGKDIGE-----------------RISNVVVMGTGEP 154

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
           L N+DN+ + + + +D  G++ S+R +T+ST G VP + ++ +E + + LA+SLHA + +
Sbjct: 155 LDNYDNLLRFIELLTDENGINISQRNLTVSTCGLVPRMRQLADEKLSITLALSLHASNQE 214

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R  L+P+   Y +  ++DAC++Y   +   R+TFEY ++ G+ND+  DA  L  ++ G+
Sbjct: 215 KRKALMPVANSYDIHDVVDACKYYFAQTGR-RVTFEYSLVGGVNDTAEDAAELSALVHGM 273

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
              INLIP NP    +Y+ S++  I  F   ++++G +  IR   G DI  ACGQL+   
Sbjct: 274 NCHINLIPVNPIKERDYVQSNKGVIEAFKNRLEKNGINVTIRREMGRDIDGACGQLRKKH 333

Query: 370 KRIPK 374
               +
Sbjct: 334 IDKER 338


>gi|56962424|ref|YP_174150.1| hypothetical protein ABC0650 [Bacillus clausii KSM-K16]
 gi|81601050|sp|Q5WKB6|RLMN_BACSK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|56908662|dbj|BAD63189.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 356

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 211/374 (56%), Gaps = 26/374 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + KES+ G+   +L + L++ G    H + R +Q+W W+Y + +  F  M++++++   L
Sbjct: 1   MSKESIYGLTMAQLTDWLMERG----HKKFRATQVWDWLYRKRVTTFAEMTNVNKDCLQL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  HF+I        + S DGT K+L R     +     IETV +  K   ++CV++QVG
Sbjct: 57  LEDHFAIETMSEHVRQESKDGTIKFLFRLQDGNL-----IETVLMRHKYGFSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G     R+L++ EI+ Q++  +  L      E            ++S++V
Sbjct: 112 CNIGCSFCASGLLTKNRDLSSGEIVEQIMKVQFHLDQVGKEE------------RVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  NF N    L I  D  GL+   R IT+STSG    I    + ++ V LA+S
Sbjct: 160 VMGIGEPFDNFQNTVDFLEIIKDHKGLAIGARHITVSTSGLAHKIYEFADLKLQVNLAVS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ ++ IN+ +P+E L+D+  +Y   +N  R+T+EY+++K +ND   +AL L
Sbjct: 220 LHAPNNELRSRIMKINKAFPIEKLMDSINYYIEKTNR-RVTYEYILIKDVNDHKEEALQL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            +++  K   + +NLIP+NP     +Y  S+ + I  F + +K+ G +  +R   G DI 
Sbjct: 279 AELIGDKRHLSYVNLIPYNPVDEHSQYQRSEPEAISQFFDTLKKKGINCGVRLEHGTDID 338

Query: 360 AACGQLKSLSKRIP 373
           AACGQL+S  ++  
Sbjct: 339 AACGQLRSKQEKKK 352


>gi|315651136|ref|ZP_07904168.1| cfr family radical SAM enzyme [Eubacterium saburreum DSM 3986]
 gi|315486601|gb|EFU76951.1| cfr family radical SAM enzyme [Eubacterium saburreum DSM 3986]
          Length = 352

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 124/364 (34%), Positives = 203/364 (55%), Gaps = 29/364 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             +  M  EEL+  +  IG P      R  Q+++W++   I  F   +++S+  R +L  
Sbjct: 3   TDIKSMDFEELKTFVKDIGEPA----FRAKQLFEWMHKLLIESFDECTNLSKAFREILKS 58

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              +   ++V+   S  D TRK+L       I     IE+V +  +   ++C+SSQVGC 
Sbjct: 59  QVILTRLKMVEVFTSKIDDTRKYLFALSDGNI-----IESVRMKYEHGNSVCISSQVGCR 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    LVRNLT  E+L QV   + +LG+                 ++SNIV+M
Sbjct: 114 MGCKFCASTLDGLVRNLTTAEMLDQVYSIQRILGE-----------------RVSNIVVM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N+DN+ K + I S  MGL+ S+R IT+ST G VP I ++ +E + + LA+SLH
Sbjct: 157 GSGEPLDNYDNIVKFVRIISSDMGLNISQRNITVSTCGIVPKIKKLADEGLNITLALSLH 216

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++++R  ++P+  KY L+ +I AC +Y   +   R+++EY ++ G+ND+  +A +L++
Sbjct: 217 APNDEIRKTIMPVANKYALKDIIAACDYYFKKTGR-RVSYEYSLVAGVNDNMEEAKSLVR 275

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++ G    INLIP NP    ++  SD+  I  F + +++ G ++ IR   G DI  ACGQ
Sbjct: 276 LVNGRNIHINLIPVNPIKERDFKQSDKLKIKAFRDFLEKKGVNATIRREMGRDIDGACGQ 335

Query: 365 LKSL 368
           L+  
Sbjct: 336 LRRR 339


>gi|299821377|ref|ZP_07053265.1| cfr family radical SAM enzyme [Listeria grayi DSM 20601]
 gi|299817042|gb|EFI84278.1| cfr family radical SAM enzyme [Listeria grayi DSM 20601]
          Length = 367

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 132/386 (34%), Positives = 218/386 (56%), Gaps = 29/386 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K S+ G+  E+L + L++    +     R  QIW W+Y + +R F  M+++ +E   L
Sbjct: 1   MSKSSIYGITLEKLTDWLVE----RDQKGFRAKQIWDWLYRKRVRSFAEMTNVPKETLAL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L + F +   E    + S DGT K+L +     +     IETV + +K   ++CV++QVG
Sbjct: 57  LEESFVMETLEKEIIQESKDGTTKYLFKLQDGNL-----IETVLMKQKYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+L+A EI+ Q++  +  L D                 ++S+IV
Sbjct: 112 CNIGCTFCASGILKKSRDLSAGEIVEQIMNVQYYLDD------------RGSDERVSHIV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++N+   L + +   GL+   R IT+STSG  P I    +E + V LAIS
Sbjct: 160 VMGIGEPFDNYENLMNFLHVVNSDSGLAIGARHITVSTSGLAPKIKEFADEDLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR  ++ INR + +E L++A  +Y   +N  R+TFEY+MLK +ND  ++A  L
Sbjct: 220 LHAPNNELRTQIMRINRTFSIETLMEAIEYYIEKTNR-RVTFEYIMLKDVNDHVKEAEEL 278

Query: 303 IKILK--GIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++++     A +N+IP+NP     +Y  S ++ I  F   +K++G +  +R   G DI 
Sbjct: 279 AQLIRPYSQLAYVNMIPYNPVAEHIDYERSTEESINAFYHVLKKNGINCVVRREHGTDID 338

Query: 360 AACGQLKSLSKRIPKVP-RQEMQITG 384
           AACGQL+  SK+I +V  R+ M+   
Sbjct: 339 AACGQLR--SKQIKRVGIRERMRRAA 362


>gi|77164417|ref|YP_342942.1| hypothetical protein Noc_0900 [Nitrosococcus oceani ATCC 19707]
 gi|254434279|ref|ZP_05047787.1| radical SAM enzyme, Cfr family [Nitrosococcus oceani AFC27]
 gi|123744359|sp|Q3JCN4|RLMN_NITOC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|76882731|gb|ABA57412.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosococcus oceani ATCC
           19707]
 gi|207090612|gb|EDZ67883.1| radical SAM enzyme, Cfr family [Nitrosococcus oceani AFC27]
          Length = 372

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/377 (42%), Positives = 219/377 (58%), Gaps = 20/377 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + +L+ + R  L+     +G        R  Q+ +WI+ R + DF  M+D+++ +R  L 
Sbjct: 5   RTNLLNLDRAGLDAFFTCLG----EKPFRARQVLRWIHQRFVTDFSAMTDLNKSLRERLT 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  PEI+ +  S DGT KWLLR       G   IETV+IPE  RGTLC+SSQ+GC 
Sbjct: 61  ESAVISLPEIIKQHRSADGTHKWLLRMH-----GNNCIETVFIPEGDRGTLCISSQIGCI 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q   RNL   EI+ Q+ LA   LG  P  E           R I+N+VMM
Sbjct: 116 LDCSFCATGKQGFNRNLAVSEIIGQLWLANKTLGRDPKGE-----------RIITNVVMM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NF+NV  ++++  D      S RR+TLST+G VP + R+     V LA+SLHA
Sbjct: 165 GMGEPLANFNNVVTAMNLMLDDFSYGLSWRRVTLSTAGMVPAMDRLRAVCPVNLAVSLHA 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ LR+ LVP+N+KYPL+ L+ ACR Y      R +TFEYVML G+NDS   A  L+++
Sbjct: 225 PTDKLRDELVPLNKKYPLQDLLSACRRYVAGDRRRAVTFEYVMLAGVNDSLPHARALLRL 284

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+PAK+NLIPFNP+ G  Y  SD   I  F E + R G  +  R  RG DI AACGQL
Sbjct: 285 LRGLPAKVNLIPFNPFSGSVYRRSDAATIDRFREELLRGGIMTVTRKTRGDDIAAACGQL 344

Query: 366 KSLSKRIPKVPRQEMQI 382
               +   +      ++
Sbjct: 345 AGRVQDRTRRTMDRQRL 361


>gi|319937496|ref|ZP_08011901.1| ribosomal RNA large subunit methyltransferase N [Coprobacillus sp.
           29_1]
 gi|319807336|gb|EFW03945.1| ribosomal RNA large subunit methyltransferase N [Coprobacillus sp.
           29_1]
          Length = 342

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 125/364 (34%), Positives = 198/364 (54%), Gaps = 28/364 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +S+    +E+L +  L++G      + R +Q+++W+Y++ +  F  M++ISQ +R  L+ 
Sbjct: 2   KSIYDYTQEQLIDEFLELG----EKKFRATQVFEWLYLKNVNSFHEMNNISQGLRQKLSA 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            +SI   +I  +++S DGT K+L       +     IE V +      +LC++SQ+GC++
Sbjct: 58  LYSIGPLQINVKQVSKDGTIKYLFELEDGGL-----IEAVLMVHDYGRSLCITSQLGCNM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +G  K  RNLTA E++ QVL      G+                 ++S++V+MG
Sbjct: 113 ACEFCASGLLKKQRNLTAGEMVNQVLTVMHDTGE-----------------RVSHVVVMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+DN+   + I +   GL+   R IT+ST G    I     E I   LAISLHA
Sbjct: 156 TGEPFDNYDNMMNFIHIINHPKGLAIGARHITISTCGLCDKIEMYAHEGIQSNLAISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN L+PIN+KYP++ L +   +Y   +N  R+T EY++LKG+ND    A  L   
Sbjct: 216 PNDEIRNQLMPINKKYPMDKLRETLAYYIQKTNR-RVTLEYILLKGVNDDITHARQLAHY 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KG+ A +NLIP+N      Y  S QKD+  F   + R   +   R   G DI  ACGQL
Sbjct: 275 VKGLNAYVNLIPYNAVDEHGYQQSLQKDVEAFKAELLRFHINVTQRKEHGRDIDGACGQL 334

Query: 366 KSLS 369
           ++  
Sbjct: 335 RAKK 338


>gi|260437315|ref|ZP_05791131.1| radical SAM enzyme, Cfr family [Butyrivibrio crossotus DSM 2876]
 gi|292810227|gb|EFF69432.1| radical SAM enzyme, Cfr family [Butyrivibrio crossotus DSM 2876]
          Length = 349

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 191/367 (52%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++   +     +EL E ++ +G P    + R  Q+++W++VR +  +  M++I   ++  
Sbjct: 1   MELTDIKSFDLDELTEYIVSLGEP----KFRAKQLYEWMHVRLVPGYDEMTNIPASLKAK 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L ++           ++S  DGT K+L R           IE+V +      ++C+SSQ 
Sbjct: 57  LKENTFYASLYPERVQVSKEDGTSKYLFRLYD-----GNYIESVLMHYHHGDSVCISSQA 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L RNL   E+L Q+   +SL G                  ++SN+
Sbjct: 112 GCRMGCRFCASTLDGLARNLYPSEMLDQIYRIQSLTG-----------------NRVSNV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEP  NFDN  K   + +D  GL+ S R +T+ST G VP I  + +  + + LAI
Sbjct: 155 VVMGSGEPFDNFDNFIKFEKLLTDENGLNISARNLTVSTCGLVPRIYELADMRLQITLAI 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+ ++++R  L+P+  KY +  ++DAC +Y   +   RITFEY ++KG ND    AL 
Sbjct: 215 SLHSPTDEMRKKLMPVANKYSISEIMDACSYYIEKTGR-RITFEYSLVKGENDGSEHALI 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  ++KG+   INLIP NP    +Y  SD K I  F + ++++     +R   G DI  A
Sbjct: 274 LADLVKGMNCHINLIPVNPIKERDYRQSDTKSIKKFKDILEKNRIQVTVRREMGRDIDGA 333

Query: 362 CGQLKSL 368
           CGQL+  
Sbjct: 334 CGQLRKR 340


>gi|261409887|ref|YP_003246128.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
 gi|261286350|gb|ACX68321.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
          Length = 353

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 129/376 (34%), Positives = 212/376 (56%), Gaps = 28/376 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K S+ G+  ++L   L + G    H + R +Q+W+W+Y + +  F  M+D+  E   L
Sbjct: 1   MNKPSIYGLTLDQLTAWLGERG----HKKFRATQVWEWLYRKRVTSFSDMTDVHPECLQL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +H++I+  E   ++ S DGT K+L +     +     IETV +  K   ++CV++QVG
Sbjct: 57  LEEHYTILTLEEHTKQESLDGTVKFLFKLVDGNL-----IETVLMRHKFGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+L+A EI+ QV+  +              +       ++S++V
Sbjct: 112 CNIGCSFCASGLLKKSRDLSAAEIVEQVMQVQLH------------LDRRGSSERVSHLV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  N++N+   + +  D  GL+   R IT+STSG    I    + ++GV LAIS
Sbjct: 160 VMGIGEPFDNYENMSDFIRVIKDHKGLAIGPRHITVSTSGLANKIVEFADSDLGVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++++R  ++ IN+  P+E L+ A  +Y   +N  RIT EY++LK +ND    AL L
Sbjct: 220 LHAPNDEIRTRIMKINKAIPIEKLMAAIDYYLEKTNR-RITLEYILLKDVNDQREHALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            +++  +   A +NLIP+NP     +Y  S ++ I  F + +K+ G S  +R   G DI 
Sbjct: 279 AELVGERRNLANVNLIPYNPVDEHSQYQRSTKESITAFYDTLKKQGISCSVRLEHGTDID 338

Query: 360 AACGQLKSLSKRIPKV 375
           AACGQL+  SK+I K 
Sbjct: 339 AACGQLR--SKQIKKA 352


>gi|288554554|ref|YP_003426489.1| ribosomal RNA large subunit methyltransferase N [Bacillus
           pseudofirmus OF4]
 gi|288545714|gb|ADC49597.1| ribosomal RNA methyltransferase N, heat shock prot [Bacillus
           pseudofirmus OF4]
          Length = 360

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 209/367 (56%), Gaps = 26/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + KES+ G+  ++L E L++ G    H + R +Q+W W+Y + ++ F  M++++++   L
Sbjct: 1   MHKESIYGLTMDQLTEWLMERG----HKKFRATQVWDWLYRKRVKSFDEMNNVNKDCLEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++F I       ++ S DGT K+L +     +     IETV +  K   ++CV++QVG
Sbjct: 57  LRENFVISTLTEHVKQESSDGTIKFLFKLYDGNL-----IETVLMKHKYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+L++ EI+ Q++  +  L                   ++S+IV
Sbjct: 112 CNIGCSFCASGLLKKSRDLSSGEIVEQIMNVQHHLDSV------------GKDERVSHIV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  NFDN+   L I  D  GL+   R IT+STSG    I    + ++ V LAIS
Sbjct: 160 VMGIGEPFDNFDNMVDFLEIMKDHKGLAIGARHITVSTSGLADKIYEFADLKLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR  ++ IN+  P+E L+ A  +Y   +N  +IT EY++LKG+ND    A  L
Sbjct: 220 LHAPNNELRTKIMKINKAIPIEKLMKAIDYYLEKTNR-KITIEYILLKGVNDQREHAKEL 278

Query: 303 IKILKGIPA--KINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++ K       +NLIP+NP     +Y  S ++DI+ F + +K++G +  +R   G DI 
Sbjct: 279 AEMFKDKRHLTYVNLIPYNPVDEHGQYQRSIKEDILGFYDELKKNGINCGVRLEHGTDID 338

Query: 360 AACGQLK 366
           AACGQL+
Sbjct: 339 AACGQLR 345


>gi|116511012|ref|YP_808228.1| hypothetical protein LACR_0188 [Lactococcus lactis subsp. cremoris
           SK11]
 gi|123025653|sp|Q032R6|RLMN_LACLS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|116106666|gb|ABJ71806.1| 23S rRNA m(2)A-2503 methyltransferase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 365

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 212/381 (55%), Gaps = 27/381 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +    + S+ G+ R++L E  ++ G      + R +Q+W W+Y + ++ F+ MS++S   
Sbjct: 5   ITTETRPSIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAVF 60

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
              LN+ F +   E V  + S DGT K+L   P +     V IETV + +    ++CV++
Sbjct: 61  IDKLNEAFILNPLEQVVVQESADGTVKYLFMLPDK-----VMIETVLMRQSYGLSVCVTT 115

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C+FC +G  K  R++TA EI+ Q++L +    +              +  ++S
Sbjct: 116 QVGCNMGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDE------------RGLDERVS 163

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEE-IGVM 238
           ++V+MG+GEP  N++++   L + +D  GL+   R IT+ST GF+P  I     E + + 
Sbjct: 164 HVVVMGIGEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQIN 223

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLHA +N+LR  L+ I R  PLE L +A  +Y   +N  R+T+EY+ML G NDSP  
Sbjct: 224 LAISLHAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTNR-RVTYEYIMLSGENDSPEI 282

Query: 299 ALNLIKILK--GIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           A  L  ++K     + +NLIP+NP     +Y  S + +   F + +K++G +  +R   G
Sbjct: 283 AQQLADLIKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHG 342

Query: 356 LDILAACGQLKSLSKRIPKVP 376
            DI AACGQL+S   +  K  
Sbjct: 343 TDIDAACGQLRSKQIKKNKAK 363


>gi|163753003|ref|ZP_02160127.1| hypothetical protein KAOT1_12622 [Kordia algicida OT-1]
 gi|161326735|gb|EDP98060.1| hypothetical protein KAOT1_12622 [Kordia algicida OT-1]
          Length = 347

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 127/370 (34%), Positives = 205/370 (55%), Gaps = 24/370 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M    K+ +  + +E+L +  +  G        R +Q+++W++ +G   F  M++IS+E 
Sbjct: 1   MKQAVKKDIRALSKEQLRDFFVSEGDKA----FRGNQVYEWLWQKGAHSFDDMTNISKET 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R +L ++F I +  +   + S DGT K  +R     +     +E+V IP  +R T CVSS
Sbjct: 57  RKMLEENFVINHIRVDKMQRSNDGTIKNAVRLHDGLV-----VESVLIPTSTRTTACVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL C FC T   K +RNL  +EI  QV+        +              GR +S
Sbjct: 112 QVGCSLDCKFCATARLKRMRNLNPDEIYDQVVAIDRESRLY-------------HGRPLS 158

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           NIV MGMGEPL N++NV K++   +   GL  S +RIT+STSG    I ++ + E+   L
Sbjct: 159 NIVFMGMGEPLMNYNNVLKAIEKITSEEGLGMSPKRITVSTSGVPKMIKKMADDEVKFKL 218

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+  +++R  ++P N  +PL+ L +A  ++   +   +IT+EYV+  GIND  +D 
Sbjct: 219 AVSLHSAIDEVRTEIMPFNEHFPLKDLKEALTYWYDKT-KNKITYEYVVWDGINDQQKDI 277

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+K  K +P+K+NLI +NP    ++  +  K I  + + ++++G +  +R  RG DI 
Sbjct: 278 NALVKFCKDVPSKVNLIEYNPIDDGQFQQASNKAIDRYVDSLEQNGITVTVRRSRGKDID 337

Query: 360 AACGQLKSLS 369
           AACGQL +  
Sbjct: 338 AACGQLANKE 347


>gi|116751471|ref|YP_848158.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|205829911|sp|A0LQM1|RLMN_SYNFM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|116700535|gb|ABK19723.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 342

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 149/365 (40%), Positives = 215/365 (58%), Gaps = 25/365 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++   +      ELEE +  IG        R  Q+++ +Y RG+R +   SD+S+  R  
Sbjct: 1   MEPVCVKDFTLPELEEWVQGIG----ERSFRARQLFRHVYGRGVRSWSECSDLSRMFRVQ 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L     +    ++ ++ + DGT K+L             IE V IP+  R TLCVSSQVG
Sbjct: 57  LEHGVELDALSVLKKEQADDGTSKYLFGLRD-----GHSIEAVLIPDLPRSTLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C FC TG+    RNL+A EI+ QV   +  LG                  +I+NIV
Sbjct: 112 CALGCKFCLTGSLGFKRNLSAAEIVDQVCQVQRDLGSRS---------------RITNIV 156

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N D+V +++ + ++  G++FS RRITLST+G VP + R+G E  V LA+SL
Sbjct: 157 FMGMGEPLANLDSVLRAIRVIAEPNGMAFSHRRITLSTAGLVPQLRRLGRESPVNLAVSL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  N+LR  L+P+NR YPLE+L+ ACR YP L   +RITFEY++L GIND P+ A  L+
Sbjct: 217 HAAENELRAELMPVNRTYPLEVLMAACREYP-LPPRKRITFEYILLDGINDDPKQAKQLV 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L GI AK+NL+PFNP PG  +    ++ ++ F E ++ +  ++ +R  RG +I AACG
Sbjct: 276 KLLHGIRAKVNLMPFNPHPGSVFRKPSEQRVLAFQEALQNARITTHVRRSRGGEIGAACG 335

Query: 364 QLKSL 368
           QL + 
Sbjct: 336 QLVAE 340


>gi|125623071|ref|YP_001031554.1| hypothetical protein llmg_0194 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|205829781|sp|A2RHR3|RLMN_LACLM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|124491879|emb|CAL96800.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069818|gb|ADJ59218.1| ribosomal RNA large subunit methyltransferase N [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 365

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 212/381 (55%), Gaps = 27/381 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +    + S+ G+ R++L E  ++ G      + R +Q+W W+Y + ++ F+ MS++S   
Sbjct: 5   ITTETRPSIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAVF 60

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
              LN+ F +   E V  + S DGT K+L   P +     V IETV + +    ++CV++
Sbjct: 61  IDKLNEAFILNPLEQVVVQESADGTVKYLFMLPDK-----VMIETVLMRQSYGLSVCVTT 115

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C+FC +G  K  R++TA EI+ Q++L +    +              +  ++S
Sbjct: 116 QVGCNMGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDE------------RGLDERVS 163

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEE-IGVM 238
           ++V+MG+GEP  N++++   L + +D  GL+   R IT+ST GF+P  I     + + + 
Sbjct: 164 HVVVMGIGEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHDNLQIN 223

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLHA +N+LR  L+ I R  PLE L +A  +Y   +N  R+T+EY+ML G NDSP  
Sbjct: 224 LAISLHAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTNR-RVTYEYIMLSGENDSPEI 282

Query: 299 ALNLIKILKGIP--AKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           A  L  ++K     + +NLIP+NP     +Y  S + +   F + +K++G +  +R   G
Sbjct: 283 AQQLADLIKSRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHG 342

Query: 356 LDILAACGQLKSLSKRIPKVP 376
            DI AACGQL+S   +  K  
Sbjct: 343 TDIDAACGQLRSKQIKKNKAK 363


>gi|218666070|ref|YP_002426339.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218518283|gb|ACK78869.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 362

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 167/371 (45%), Positives = 218/371 (58%), Gaps = 26/371 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++  L+G+ R+ L + L   G        R +QI +W++ R + DF  M+DIS+ +R  L
Sbjct: 11  ERPHLLGLGRQSLAKLLRTWG----ESPFRANQILQWLHTRQVTDFAAMTDISKTLRARL 66

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PEI+ ++ + D TRKWLLR P         IETV+IP + RGTLC+SSQVGC
Sbjct: 67  AAETRIDMPEIIADQTAADCTRKWLLRLPD-----GNAIETVFIPGEDRGTLCISSQVGC 121

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q L RNL   EI+ QV +AR  LG                   I+NIV 
Sbjct: 122 SLACSFCATGAQGLSRNLETHEIIAQVRVARDFLGLDA----------------ITNIVF 165

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEP+ N   V  +L +  D     F  RRIT+ST+G VP + R+G E  V LAISLH
Sbjct: 166 MGMGEPMLNLREVLPALDLLRDDYAYGFGARRITVSTAGVVPGMDRLGAESPVNLAISLH 225

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  +++R+ILVP+NR YPL  L+ ACR    L   RRITFEYVML+G+ND+   A  L++
Sbjct: 226 ASRDEIRDILVPVNRHYPLAELLAACRR-YPLPPRRRITFEYVMLEGVNDADSHARELLR 284

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ IPA +NLIPFNP+PG +Y  S Q  I  F + I R    +  R PRG DI AACGQ
Sbjct: 285 LLRDIPAMVNLIPFNPFPGSDYKRSPQVRIDAFRDIILRGNVMTVTRRPRGDDIAAACGQ 344

Query: 365 LKSLSKRIPKV 375
           L    +   + 
Sbjct: 345 LAGQVRAGRRS 355


>gi|291534141|emb|CBL07254.1| 23S rRNA m(2)A-2503 methyltransferase [Megamonas hypermegale
           ART12/1]
          Length = 345

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 201/365 (55%), Gaps = 26/365 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            ++ G+   EL   +  + +P    + R  QI +W+Y +    F  M+++S+++R  L Q
Sbjct: 2   TNIFGLNLTELTSLITDLNLP----KFRAKQIIEWLYQKHATSFDEMTNLSKDLREKLAQ 57

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F+I   +  D   S DG T K+LL F     G  + +ETV + +    ++CVSSQ GC+
Sbjct: 58  EFTIERAKSCDRLDSSDGKTTKFLLEF-----GDGIGVETVLMRQPYGNSICVSSQAGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +    + RNL+  EIL Q +  + LL                 G +I+NIV+M
Sbjct: 113 MGCSFCASTLHGMARNLSTGEILAQAMFIQELLNQ--------------TGEQINNIVIM 158

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEP+ N+DNV   + +  +   L+   R IT+STSG VP I ++ +E + + L+ISLH
Sbjct: 159 GSGEPMLNYDNVLNFIRLVHEPYCLNLGYRNITISTSGIVPGINKLAQENLPITLSISLH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N LR  L+PIN++YP+E +I A  +Y   +  RRIT+EY+++   ND+  +A+ L K
Sbjct: 219 APNNVLRTELMPINKRYPIEEVIKAAVNYAN-TTKRRITYEYILIDKYNDNMTEAVELCK 277

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LK   A +NLIP NP     Y       I  F++ +     ++ IR   G DI AACGQ
Sbjct: 278 LLKNQLANVNLIPINPVKERNYNRPSLARIKAFAKYLNDHHLTATIRQEMGTDIQAACGQ 337

Query: 365 LKSLS 369
           L++  
Sbjct: 338 LRNKH 342


>gi|198283710|ref|YP_002220031.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198248231|gb|ACH83824.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 363

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 167/371 (45%), Positives = 218/371 (58%), Gaps = 26/371 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++  L+G+ R+ L + L   G        R +QI +W++ R + DF  M+DIS+ +R  L
Sbjct: 12  ERPHLLGLGRQSLAKLLRTWG----ESPFRANQILQWLHTRQVTDFAAMTDISKTLRARL 67

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PEI+ ++ + D TRKWLLR P         IETV+IP + RGTLC+SSQVGC
Sbjct: 68  AAETRIDMPEIIADQTAADCTRKWLLRLPD-----GNAIETVFIPGEDRGTLCISSQVGC 122

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL CSFC TG Q L RNL   EI+ QV +AR  LG                   I+NIV 
Sbjct: 123 SLACSFCATGAQGLSRNLETHEIIAQVRVARDFLGLDA----------------ITNIVF 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEP+ N   V  +L +  D     F  RRIT+ST+G VP + R+G E  V LAISLH
Sbjct: 167 MGMGEPMLNLREVLPALDLLRDDYAYGFGARRITVSTAGVVPGMDRLGAESPVNLAISLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  +++R+ILVP+NR YPL  L+ ACR    L   RRITFEYVML+G+ND+   A  L++
Sbjct: 227 ASRDEIRDILVPVNRHYPLAELLAACRR-YPLPPRRRITFEYVMLEGVNDADSHARELLR 285

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+ IPA +NLIPFNP+PG +Y  S Q  I  F + I R    +  R PRG DI AACGQ
Sbjct: 286 LLRDIPAMVNLIPFNPFPGSDYKRSPQVRIDAFRDIILRGNVMTVTRRPRGDDIAAACGQ 345

Query: 365 LKSLSKRIPKV 375
           L    +   + 
Sbjct: 346 LAGQVRAGRRS 356


>gi|221632343|ref|YP_002521564.1| radical SAM enzyme, Cfr family [Thermomicrobium roseum DSM 5159]
 gi|221156232|gb|ACM05359.1| radical SAM enzyme, Cfr family [Thermomicrobium roseum DSM 5159]
          Length = 379

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 209/370 (56%), Gaps = 27/370 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +++E+L      ELE  +   G+P    R R  Q++ W Y + + +++ MS + + VR  
Sbjct: 24  VQRETLHDYTLGELEAWVEGRGLP----RYRARQLFHWAYQQLVLEYESMSVLPKAVRSE 79

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L++   I     V +++S D  T K L R           +ETV +    R T+CVS Q+
Sbjct: 80  LSETLPISGLVPVRQRVSDDRETIKLLFRTRDDHF-----VETVVMFYPDRTTVCVSCQI 134

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ CSFC TG   L+RNL+A E++ QV+                  +     R+ISNI
Sbjct: 135 GCAIGCSFCATGLSGLIRNLSAGEMVSQVVH--------------AARLARERERRISNI 180

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
           V+MGMGEP  N+D V + ++I +D  GL    R ITLST+G VP I R+ EE   V LA+
Sbjct: 181 VVMGMGEPFHNYDAVMRFVAIVNDRQGLGIGARHITLSTAGVVPFIDRLAEEPYQVKLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA ++ LR+ LVPINR++P++ L+ ACR Y   +   R+TFEYV+++ +ND  R A  
Sbjct: 241 SLHAPNDALRSQLVPINRRWPIDELLAACRRYVARTGR-RVTFEYVLIEDVNDDERTAAE 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           L + L+G+   +NLIP+NP P    +     + I  F   ++R G  + +R  RG++I A
Sbjct: 300 LARRLRGLLCHVNLIPYNPTPAAPLFRRPGPERIERFRAVLERYGIPATVRYSRGVEIAA 359

Query: 361 ACGQLKSLSK 370
           ACGQL++  +
Sbjct: 360 ACGQLRAQEE 369


>gi|293365659|ref|ZP_06612368.1| cfr family radical SAM enzyme [Streptococcus oralis ATCC 35037]
 gi|291316027|gb|EFE56471.1| cfr family radical SAM enzyme [Streptococcus oralis ATCC 35037]
          Length = 349

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 121/362 (33%), Positives = 204/362 (56%), Gaps = 26/362 (7%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN  F +   +  
Sbjct: 1   MQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQR 56

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
             + S DGT K+L   P   +     IETV + +    ++CV++QVGC++ C+FC +G  
Sbjct: 57  IVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLI 111

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
           K  R+L   EI+ Q++L +    +                 ++S+IV+MG+GEP  N++N
Sbjct: 112 KKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVMGIGEPFDNYNN 159

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255
           V   +   +D  G++   R IT+STSG    I     E + V LA+SLHA +N+LR+ ++
Sbjct: 160 VLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIM 219

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKI 313
            INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L ++LK I   + +
Sbjct: 220 KINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYV 278

Query: 314 NLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
           NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AACGQL+S + + 
Sbjct: 279 NLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAACGQLRSNTMKR 338

Query: 373 PK 374
            +
Sbjct: 339 DR 340


>gi|169832893|ref|YP_001694228.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pneumoniae Hungary19A-6]
 gi|205829906|sp|B1IAU3|RLMN_STRPI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|168995395|gb|ACA36007.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 361

 Score =  408 bits (1048), Expect = e-112,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 207/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLTHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV       +D  G++   R IT+ST G    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTLGLAHKIRDFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLI +NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLISYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|302874751|ref|YP_003843384.1| radical SAM enzyme, Cfr family [Clostridium cellulovorans 743B]
 gi|307690634|ref|ZP_07633080.1| ribosomal RNA large subunit methyltransferase N [Clostridium
           cellulovorans 743B]
 gi|302577608|gb|ADL51620.1| radical SAM enzyme, Cfr family [Clostridium cellulovorans 743B]
          Length = 351

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 120/363 (33%), Positives = 192/363 (52%), Gaps = 32/363 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++    +EL++ +   G        R  Q++ WIY + +  F  M ++ +  +  L +
Sbjct: 2   RNILDYSLKELKQWMEANG----ENAFRAKQVFDWIY-KAVASFDEMKNLPKNTKEKLKE 56

Query: 67  HFSIIYPEIVDEKIS--CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +F I  PEI  +  S   D T K+LL+     +     IE VY+      ++C+S+Q+GC
Sbjct: 57  YFFIGIPEITHKYDSINKD-TAKYLLKLSDGNV-----IEAVYMKYNYGNSVCLSTQIGC 110

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + CSFC +     +R+LT+ +IL ++L       +                 ++SNIV+
Sbjct: 111 RMGCSFCASTIGGRIRDLTSGDILGEILAMEFNEKE-----------------RVSNIVL 153

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MG GEP  N++NV K L + +   GL+   R ITLST G VP I R  + +  V LAISL
Sbjct: 154 MGSGEPFDNYENVTKFLELVNSKDGLNIGARHITLSTCGLVPGIIRFADLKSQVTLAISL 213

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR  ++PI  KY ++ +++AC +Y   +N  RITFEY ++K +ND+   A  L 
Sbjct: 214 HAPNDELRKTMMPIANKYSIKEILEACNYYIEKTNR-RITFEYSLVKDVNDTEDHARELS 272

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKGI   +NLIP N      +     K ++ F + +  +G  + IR   G DI AACG
Sbjct: 273 ALLKGILCHVNLIPVNVVKESGFSRPSDKAVMKFKKILDSNGIEATIRKEMGADINAACG 332

Query: 364 QLK 366
           QL+
Sbjct: 333 QLR 335


>gi|224373787|ref|YP_002608159.1| ribosomal RNA large subunit methyltransferase N [Nautilia
           profundicola AmH]
 gi|259491991|sp|B9L721|RLMN_NAUPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|223590036|gb|ACM93772.1| radical SAM enzyme, Cfr family [Nautilia profundicola AmH]
          Length = 354

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 136/378 (35%), Positives = 210/378 (55%), Gaps = 39/378 (10%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+  +  + EEL E            + RT Q+++W+Y + + DF+ M +I ++++  
Sbjct: 1   MDKKIFMDYLPEELMEF-------GIQPKFRTKQLYQWVYRKYVDDFEEMKNIPKDLKAK 53

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----------- 112
           L + F I   E+++ +I+ DGT K+L +           +ETV I  K            
Sbjct: 54  LKKEFIINPLELINHEIATDGTEKFLFKMHDN-----HTVETVLIKMKDEEIKDGKIKEA 108

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           + T+CVS+QVGC + C+FC T     VRNL+A EI+ QV   +                 
Sbjct: 109 KYTVCVSTQVGCKVGCAFCLTAKGGFVRNLSAGEIVAQVWWMKKFKNFD----------- 157

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
                K  N+V MGMGEPL N+D + K++ I ++  G++ S RR T+STSG  P I R+G
Sbjct: 158 ---ENKALNVVYMGMGEPLDNYDALVKAIKILANPDGMNISPRRQTVSTSGIAPKIKRLG 214

Query: 233 -EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
            E +GV LAISLHAV ++LR  L+P+N+ Y +E +IDA R +P +   +++ FEY+++K 
Sbjct: 215 NENLGVNLAISLHAVDDELREQLIPLNKAYNIESVIDAIREFP-IDKRKKVMFEYLVIKD 273

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
           +ND    A  L+K+L GIP+K+NLI FNP+PG  +   D   +  F + +   G    IR
Sbjct: 274 VNDDIESAKKLVKLLNGIPSKVNLIYFNPYPGTNFKRPDDATMKKFQDYLINKGIMCTIR 333

Query: 352 TPRGLDILAACGQLKSLS 369
             +G+DI AACGQL+   
Sbjct: 334 KSKGMDISAACGQLREKE 351


>gi|329926694|ref|ZP_08281104.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
 gi|328939034|gb|EGG35400.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
          Length = 353

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 129/376 (34%), Positives = 212/376 (56%), Gaps = 28/376 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K S+ G+  ++L   L + G    H + R +Q+W+W+Y + +  F  M+D+  E   L
Sbjct: 1   MNKPSIYGLTLDQLTAWLGERG----HKKFRATQVWEWLYRKRVTSFSDMTDVHPECLQL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +H++I+  E   ++ S DGT K+L +     +     IETV +  K   ++CV++QVG
Sbjct: 57  LEEHYTILTLEEHTKQESLDGTVKFLFKLVDGNL-----IETVLMRHKFGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+L+A EI+ QV+  +              +       ++S++V
Sbjct: 112 CNIGCSFCASGLLKKSRDLSAAEIVEQVMQVQLH------------LDRRGSSERVSHLV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  N++N+   + +  D  GL+   R IT+STSG    I    + ++GV LAIS
Sbjct: 160 VMGIGEPFDNYENMSDFIRVIKDHKGLAIGPRHITVSTSGLANKIVEFADSDLGVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++++R  ++ IN+  P+E L+ A  +Y   +N  RIT EY++LK +ND    AL L
Sbjct: 220 LHAPNDEIRTRIMKINKAIPIEKLMAAIDYYLEKTNR-RITLEYILLKDVNDQREHALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            +++  +   A +NLIP+NP     +Y  S ++ I  F + +K+ G S  +R   G DI 
Sbjct: 279 AELVGERRNLANVNLIPYNPVDEHSQYQRSTKESITGFYDTLKKQGISCSVRLEHGTDID 338

Query: 360 AACGQLKSLSKRIPKV 375
           AACGQL+  SK+I K 
Sbjct: 339 AACGQLR--SKQIKKA 352


>gi|213963853|ref|ZP_03392101.1| radical SAM enzyme, Cfr family [Capnocytophaga sputigena Capno]
 gi|213953533|gb|EEB64867.1| radical SAM enzyme, Cfr family [Capnocytophaga sputigena Capno]
          Length = 350

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 135/373 (36%), Positives = 206/373 (55%), Gaps = 24/373 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            ++K  +  + +EEL       G        R +Q+++W++ +G+  F+ M+ + +  R 
Sbjct: 1   MMQKRDIRALTKEELRTFFESNGDKA----FRGNQVYEWLWQKGVHTFEAMTSLPKATRE 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +L +HFSI + ++   + S DGT K  +R     +     +E+V IP  +R T CVSSQV
Sbjct: 57  MLAEHFSINHIKVDVMQRSNDGTIKNAVRLHDGLL-----VESVLIPTDTRTTACVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GCSL CSFC T   K +RNL  +EI  QV             + I+       GR +SNI
Sbjct: 112 GCSLNCSFCATARLKRMRNLLPDEIFDQV-------------KVIDEQSRAFFGRPLSNI 158

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N++NV K++   +   GL  S +RITLSTSG    I ++ + E+   LA+
Sbjct: 159 VFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTSGIPKLIKKMADDEVKFKLAV 218

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+    +R  ++P N ++PLE L DA  ++   +   RIT+EYV+ KGIND  +D   
Sbjct: 219 SLHSAIGSVRTGIMPFNEQFPLEELRDALAYWYQKT-KNRITYEYVVWKGINDQKKDVEA 277

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           LIK  K  P+K+NLI +NP    ++  +D K +  +   ++ +G +  +R  RG DI AA
Sbjct: 278 LIKFCKFAPSKVNLIEYNPIDDGDFQQADPKALELYQTMLEAAGITVTVRHSRGKDIDAA 337

Query: 362 CGQLKSLSKRIPK 374
           CGQL +   +  K
Sbjct: 338 CGQLANKKVKSEK 350


>gi|168486739|ref|ZP_02711247.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC1087-00]
 gi|168490855|ref|ZP_02714998.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC0288-04]
 gi|183570290|gb|EDT90818.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC1087-00]
 gi|183574611|gb|EDT95139.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC0288-04]
          Length = 361

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 208/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  + R+ ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QV C+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVDCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STS     I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVCTINDDKGMAIGARHITVSTSVLAHKIRNFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL   +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALEFAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEYGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|325286898|ref|YP_004262688.1| Ribosomal RNA large subunit methyltransferase N [Cellulophaga
           lytica DSM 7489]
 gi|324322352|gb|ADY29817.1| Ribosomal RNA large subunit methyltransferase N [Cellulophaga
           lytica DSM 7489]
          Length = 347

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 132/370 (35%), Positives = 211/370 (57%), Gaps = 24/370 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   KK+ +  + +E++    +  G        R +Q+++W++ +G   F+ M+++S+E 
Sbjct: 1   MEKNKKKDIRALTKEQIRAFFVAQGDKA----FRGNQVYEWLWQKGAHSFEAMTNVSKET 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R LL+ +F I + ++   + S DGT K  ++     I     +E+V IP K+R T CVSS
Sbjct: 57  RQLLDDNFVINHIKVDQMQRSSDGTIKNAVQLHDGLI-----VESVLIPTKTRTTACVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL C FC T   K +RNL  +EI  QV+              I+        RK+S
Sbjct: 112 QVGCSLDCRFCATSRLKRMRNLNPDEIYDQVVA-------------IDNESRLYFDRKLS 158

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           NIV MGMGEPL N++NV K++   + + GL+ S +RIT+STSG    I ++ + E+   L
Sbjct: 159 NIVFMGMGEPLMNYNNVLKAIDKITSTEGLAMSPKRITVSTSGVPKMIKKMADDEVKFKL 218

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+  +++R  ++P N  +PL+ L +A +++   +   RIT+EYV+  GIND+  DA
Sbjct: 219 AVSLHSAVDEIRTSIMPFNATFPLKDLREALQYWYAKT-KSRITYEYVVWDGINDTQNDA 277

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+   +  P+K+NLI +NP    E+  +  K I  +   ++R+G +  +R  RG DI 
Sbjct: 278 NALVDFCRFAPSKVNLIEYNPIDDGEFQQASNKAIDMYVTTLERNGITVTVRRSRGKDID 337

Query: 360 AACGQLKSLS 369
           AACGQL + S
Sbjct: 338 AACGQLANKS 347


>gi|120434720|ref|YP_860407.1| radical SAM superfamily protein, UPF0063 [Gramella forsetii KT0803]
 gi|205829770|sp|A0LY94|RLMN_GRAFK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|117576870|emb|CAL65339.1| radical SAM superfamily protein, UPF0063 [Gramella forsetii KT0803]
          Length = 352

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 205/366 (56%), Gaps = 24/366 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+ +  + +E+L++  +  G        R +Q+++W++ +    F  M++IS+E R +L
Sbjct: 9   RKKDIRALTKEQLQKFFVAEG----DKSFRGTQVYEWLWSKAAHSFDDMTNISKETRQML 64

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F I +  +   + S DGT K  ++         + +E+V IP KSR T CVSSQVGC
Sbjct: 65  KDNFVINHIRVDRMQRSSDGTIKNAVKLHD-----ALTVESVLIPTKSRTTACVSSQVGC 119

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C FC T   K +RNL  +EI  QV+              I+        R +SNIV 
Sbjct: 120 SLDCQFCATAKLKRMRNLNPDEIYDQVVA-------------IDNESRLYFDRPLSNIVF 166

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MGMGEPL N++NV K++   +   GL  S +RIT+STSG    I ++ + E  + LA+SL
Sbjct: 167 MGMGEPLMNYNNVMKAVEKITSPEGLGMSPKRITISTSGVPKMIKKLADDEAKIKLAVSL 226

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  N++R  ++P N  +PLE L +A  ++   + + RIT+EY++ K IND+  DA  L+
Sbjct: 227 HSARNEVRTQIMPFNETFPLEDLREALEYWYSKTTS-RITYEYIVWKDINDTREDAQALV 285

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +  K +P K+NLI +NP     +  +  +    + + ++R+G +  +R  RG DI AACG
Sbjct: 286 RFCKYVPCKVNLIEYNPIDDGNFQQAAIEATNMYQDMLERNGITVTVRRSRGKDIDAACG 345

Query: 364 QLKSLS 369
           QL + S
Sbjct: 346 QLANKS 351


>gi|317485889|ref|ZP_07944749.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6]
 gi|316922863|gb|EFV44089.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6]
          Length = 404

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 139/378 (36%), Positives = 203/378 (53%), Gaps = 27/378 (7%)

Query: 2   NFLKKESLIGMMREELEEA-LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           N  +   ++ +   ELE   +  +G P    + R +Q+W+WI+ +    F  M+D+S+++
Sbjct: 44  NATRMIDILNLTFPELERFIVEDLGQP----KFRAAQVWQWIWQKHATSFDAMTDVSKQL 99

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGT 115
           R  L +   I+ PEIV  + S DGT K LLR     +     +ETV +P        R  
Sbjct: 100 RAKLAEVAEIVLPEIVTVQTSSDGTEKLLLRLRDGAL-----VETVILPSTGQDGSVRIA 154

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
            CVSSQ+GC++ C+FC TGT   +RN+TA EIL QVL+AR  LGD      I        
Sbjct: 155 QCVSSQIGCAMGCTFCSTGTMGFIRNMTAGEILSQVLVARMRLGDNRIDHPI-------- 206

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
              I N+V MGMGEPL N     ++L + +   G+ FS RRIT+ST G    +  +G+  
Sbjct: 207 ---IRNLVFMGMGEPLLNLRETTRALEMLNHDKGMDFSPRRITVSTCGIKAGLRELGDSG 263

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              LA+SLHA + DLR  ++P    + L+ L+     YP L     ITFEY++L G+ND 
Sbjct: 264 LAFLAVSLHAPNQDLRAKIMPKAANWHLDDLMATLESYP-LKTREHITFEYLLLGGVNDQ 322

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           P  A  L K++  +  K+NLI +NP     Y    + DI+ F + +   G ++ +R  +G
Sbjct: 323 PEHARELAKLVSRVKGKLNLIAYNPSETQLYKAPTEADILAFEKILWSKGVTAILRKSKG 382

Query: 356 LDILAACGQLKSLSKRIP 373
            DI AACGQLKS  +R  
Sbjct: 383 QDIKAACGQLKSDWEREK 400


>gi|320527283|ref|ZP_08028468.1| radical SAM enzyme, Cfr family [Solobacterium moorei F0204]
 gi|320132307|gb|EFW24852.1| radical SAM enzyme, Cfr family [Solobacterium moorei F0204]
          Length = 346

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 206/366 (56%), Gaps = 25/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +S+  +  +   + L + G        R  Q+++W+Y + +  FQ M+D+   +   L Q
Sbjct: 2   QSIYDLNMKMAIDMLAEKG----QKSYRAKQLFQWLYRKRVDSFQEMTDMPASLLEELAQ 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            +SI   + +  +++ DGT K+L +           +ETV +      +LCV+SQ+GC++
Sbjct: 58  EYSIEPVKEITRQVARDGTTKYLFQL-----ADGSSVETVLMHFHFGESLCVTSQLGCNM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +G  K  R+LTA EI+ QV+  +                +  +G+++ N+V+MG
Sbjct: 113 GCTFCASGLLKKQRDLTAGEIVGQVMFVQKE--------------LDKIGKRVDNVVIMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
            GEP  N+DNV +   I +  +GL+   R IT+ST G VP I    +      LAISLHA
Sbjct: 159 TGEPFDNYDNVMRFCEIINSDLGLAIGARHITISTCGIVPRIKDFAKGHYQYNLAISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  L+PI++ YPL++L+DA   Y   +N  RITFEY++L G+ND+   A+ L  +
Sbjct: 219 PNDELRRKLMPIDQAYPLDVLMDALHEYSEGNNR-RITFEYILLHGVNDTDAHAIQLANL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++G+ A +NLIP+N      Y+ +++K  + F + + + G  + +R+  G DI AACGQL
Sbjct: 278 IRGMNAYVNLIPYNQVDENGYVSTNEKVALHFYDVLMKHGVKATLRSKHGDDIDAACGQL 337

Query: 366 KSLSKR 371
           ++  ++
Sbjct: 338 RAKHEK 343


>gi|225018694|ref|ZP_03707886.1| hypothetical protein CLOSTMETH_02644 [Clostridium methylpentosum
           DSM 5476]
 gi|224948422|gb|EEG29631.1| hypothetical protein CLOSTMETH_02644 [Clostridium methylpentosum
           DSM 5476]
          Length = 348

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 130/366 (35%), Positives = 201/366 (54%), Gaps = 29/366 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             ++ +  EEL E L  +G P    + R  Q++ W++ + + DF  M+++S + R  L +
Sbjct: 3   TDILSLTYEELAEKLGALGQP----KYRAKQVFAWLHSKQVLDFAQMTNLSIQFREQLGK 58

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I   +I  + +S  D T K+L             +ETV +      ++CVS+QVGC 
Sbjct: 59  NFYINEIKIRKKLVSQLDDTVKYLYELRD-----GEFVETVVMRYHHGNSICVSTQVGCR 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +     VR+LT  EIL Q+  A   LG+                 KISN+V+M
Sbjct: 114 MGCSFCASTKAGFVRHLTPSEILGQIYTAERDLGE-----------------KISNVVLM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEPL NF+NV   L + S   G +   R +TLST G V  I R+ E+ + + L+ISLH
Sbjct: 157 GIGEPLDNFNNVLTFLELLSHPEGRNLGMRHVTLSTCGLVDQIYRLAEKNLQITLSISLH 216

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR+  +P+NR+YP++ L+ ACR Y   +   RI+FEY ++ G NDSP  A  L  
Sbjct: 217 APNDGLRSQTMPVNRRYPIDELLAACRAYADRTGR-RISFEYALIDGFNDSPAHAKELAS 275

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            ++G+   +NLIP N     +Y  S Q+ +  F++ ++ SG ++ +R   G DI AACGQ
Sbjct: 276 RIRGMLCHVNLIPVNRIEERDYASSSQQSVKRFAQVLESSGINATVRRTLGQDINAACGQ 335

Query: 365 LKSLSK 370
           L+   K
Sbjct: 336 LRRDEK 341


>gi|32491320|ref|NP_871574.1| hypothetical protein WGLp571 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|81741588|sp|Q8D1Y5|RLMN_WIGBR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|25166527|dbj|BAC24717.1| yfgB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 382

 Score =  406 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 158/374 (42%), Positives = 223/374 (59%), Gaps = 23/374 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +++G  REEL +  +KIG      + R  QI KWIY R   D   M+D S+ +++ L
Sbjct: 24  KKINILGKTREELYDFFIKIG----EEKFRAEQIMKWIYKRYCDDVSLMTDFSKNLKNKL 79

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I + +I  E IS DGT KW+L+   +       IETVYIPE +R TLC+SSQ+GC
Sbjct: 80  KNIIKIDHLDIESENISQDGTIKWVLKINDQN------IETVYIPEINRATLCISSQIGC 133

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNL + EI+ Q+  A  ++ D    +           +KI+NIVM
Sbjct: 134 ALNCKFCATSYQGFNRNLNSYEIISQIWYAMKIINDRNNFKL----------KKITNIVM 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  N+  ++ I  D+ G   SKRRIT+ST+G  P I ++G+ I V LAISLH
Sbjct: 184 MGMGEPLLNLKNLVPAIKIILDNYGFGLSKRRITISTAGISPVIKKLGKLIDVKLAISLH 243

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRDALNL 302
           A ++ +RN ++PIN+KY ++ ++ + + Y     +N  +I+ EY+ML  IND    A  L
Sbjct: 244 APNDIIRNKIMPINKKYNIKSILLSAKKYISTSKANKGKISIEYIMLNEINDKTEHAYQL 303

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           I  LK IP KINLIP+NP+P  +Y CS+   I  F + + + G ++ IR  RG+DI AAC
Sbjct: 304 INCLKNIPCKINLIPWNPFPYVKYKCSNFNKINNFYKILIKHGITTTIRKQRGIDIKAAC 363

Query: 363 GQLK-SLSKRIPKV 375
           GQL  ++  RI K 
Sbjct: 364 GQLSGNVINRINKR 377


>gi|172058977|ref|YP_001815437.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium
           sibiricum 255-15]
 gi|205829757|sp|B1YG36|RLMN_EXIS2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|171991498|gb|ACB62420.1| radical SAM enzyme, Cfr family [Exiguobacterium sibiricum 255-15]
          Length = 357

 Score =  406 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 210/379 (55%), Gaps = 26/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K S+ G+  E++ E L   G    H   R  Q+W W+Y + +  F  M++++++   L
Sbjct: 1   MNKPSIYGLTLEQMTEWLSHQG----HKPFRAKQVWDWLYRKRVTTFAEMTNVNKDCLEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+Q F+I       ++ S DGT K+L +     +     IETV +  K   ++CV++QVG
Sbjct: 57  LDQSFAIDSMTQAVKQESADGTIKFLFKLYDGSL-----IETVLMRHKYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+L+A EI+ Q++  +              +       ++S++V
Sbjct: 112 CNIGCSFCASGLIKKSRDLSAGEIVEQIMNVQHH------------LDAVGKEERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  NFDN+   L++  D  GL+   R IT+STSG    I +  + ++ V LAIS
Sbjct: 160 VMGIGEPFDNFDNMVDFLNVIKDHNGLAIGARHITVSTSGLADKIYKFADLKLQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR  ++ INR  PLE L+ A  +Y   +N  +IT EY++L+G+ND    A+ L
Sbjct: 220 LHAPNNELRTQIMKINRAIPLEKLMPAIDYYVKTTNR-KITIEYILLRGVNDQKAQAIEL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K+   K     +NLIP+NP     +Y  S  +DI TF + +K++G +  +R   G DI 
Sbjct: 279 AKLFEDKRHLTYVNLIPYNPVDEHGQYQRSTSEDISTFYDTLKKNGLNCGVRLEHGTDID 338

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL+S   +   V  +
Sbjct: 339 AACGQLRSKQIKKDTVAAK 357


>gi|78358007|ref|YP_389456.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123727640|sp|Q30X35|RLMN_DESDG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78220412|gb|ABB39761.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 358

 Score =  406 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 140/367 (38%), Positives = 205/367 (55%), Gaps = 25/367 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             ++ +  EELE  L++        + R  QIW+W++ + +RDF  M+++S++ R  L +
Sbjct: 2   VDILNLTFEELETFLVE---KLGEKKFRARQIWQWLWNKYVRDFDQMTNVSKQTRAQLKE 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCS 125
           H  I +PE+V    S DGT K+LLR     +     +ETV IP  + R T C+S QVGC+
Sbjct: 59  HARIFWPEVVTTSKSQDGTTKFLLRLADGAL-----VETVLIPGSQGRITQCLSCQVGCA 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TGT    RN+T  EIL QVL+AR  L D                  + N+V M
Sbjct: 114 MGCTFCATGTLGFERNMTMSEILGQVLVAREYLNDVAERPI------------LRNLVFM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEEIGVMLAISLH 244
           GMGEPL N D + +SL   +  +GL FS RRIT+ST G  P  + R+GE     LA+SLH
Sbjct: 162 GMGEPLLNLDEIMRSLHTLNSELGLQFSPRRITVSTCGVNPEGLRRLGESGLAYLAVSLH 221

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A + +LR  ++P   ++ L   I+A + YP L    RITFEY++L G+NDS   A  L++
Sbjct: 222 APTQELRRTIMPKAARWELNDFIEALQSYP-LKTRERITFEYLLLGGVNDSLEHAKQLVR 280

Query: 305 ILKGIPAKINLIPFNPW--PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           ++    AK+NLI +NP       Y    ++ I+ F + +     ++ IR  +G DI AAC
Sbjct: 281 LVSRTKAKLNLIVYNPSGDEADPYAAPTEERILAFEQYLWSKHVTAIIRKSKGADIKAAC 340

Query: 363 GQLKSLS 369
           GQLK+  
Sbjct: 341 GQLKAAE 347


>gi|254519239|ref|ZP_05131295.1| radical SAM protein [Clostridium sp. 7_2_43FAA]
 gi|226912988|gb|EEH98189.1| radical SAM protein [Clostridium sp. 7_2_43FAA]
          Length = 343

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 128/361 (35%), Positives = 200/361 (55%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++    +E+   + + G        R  Q++ WIY + I +F  M ++ + +   L  +
Sbjct: 3   NILNYSLDEISLWMKENGESA----FRAKQVFSWIY-KNIWNFDDMKNLPKSLVEKLKGN 57

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F I  PE+V++  S  DGT+K LL F    I     IE+V +  K   ++C+S+Q+GC +
Sbjct: 58  FYIGIPEVVEKYESTLDGTQKLLLAFDDGNI-----IESVIMKYKHGNSICISTQIGCRM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +  +  VRNLT+ EIL +V++A+ ++G+                 +ISNIV+MG
Sbjct: 113 GCKFCASTLEGRVRNLTSGEILSEVIIAQKVIGE-----------------RISNIVLMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHA 245
            GEPL N++NV K L + +   GL+  +R ITLST G VP I  + ++   + LAISLHA
Sbjct: 156 SGEPLDNYENVTKFLDLVNADYGLNIGQRHITLSTCGLVPKIYELADKGYSITLAISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            S++ R  ++PI  KY ++ +++AC +Y   +   RITFEY ++ GIND   DA +L K+
Sbjct: 216 FSDEKRREIMPIANKYSIKEILEACDYYFEKTGR-RITFEYSLVSGINDGKEDAKSLSKL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG    +NLIP N           +K I  F + +  +G    +R   G DI AACGQL
Sbjct: 275 LKGRQCHVNLIPVNEIKENTLKRPSKKTIEEFEKIVNENGIEVTVRREMGNDINAACGQL 334

Query: 366 K 366
           +
Sbjct: 335 R 335


>gi|308274581|emb|CBX31180.1| Ribosomal RNA large subunit methyltransferase N [uncultured
           Desulfobacterium sp.]
          Length = 347

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 155/370 (41%), Positives = 221/370 (59%), Gaps = 25/370 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN   K+++I + ++E    L ++GI       RT QI+KWIY + +  F+ M+DI  E+
Sbjct: 1   MNSESKKNIIELTKDEFSFWLKEMGIEA----YRTHQIFKWIYSKQVDTFEEMTDIGLEL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R LL  H++I        +IS DG++K+L             IE+V IPEK+  TLC+SS
Sbjct: 57  RKLLLNHYTINRLNKQKVEISSDGSKKYLFGLTD-----GNYIESVLIPEKNHYTLCISS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+  C FC T      RNLT  EI+ QV   ++               +     ++S
Sbjct: 112 QVGCAQGCRFCLTAKGGFARNLTKAEIVSQVRDIQN--------------DVAGEKLRLS 157

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSM-GLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           NIV MGMGEPL N+ NV K++   S    GL FSKR+IT+ST+G VP +  +G++ GV L
Sbjct: 158 NIVFMGMGEPLANYKNVIKAIDTISAKDTGLGFSKRKITISTAGLVPFLKDLGKDAGVNL 217

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           AISL+A  N  R++L+PINRKYP++ LI+ACR Y  L    RITFEY+++KG+NDSP DA
Sbjct: 218 AISLNAADNSTRDMLMPINRKYPVKELIEACRTY-DLKPRNRITFEYILIKGVNDSPADA 276

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L K+L+ + +KINLIPFN +   E+   ++  I  F   +    Y++ IR  +G DI 
Sbjct: 277 NRLAKLLRPVKSKINLIPFNEYETSEFKRPEESVIHHFLNILLNENYTAVIRNSKGQDIS 336

Query: 360 AACGQLKSLS 369
           AACGQL++ +
Sbjct: 337 AACGQLRARN 346


>gi|319953716|ref|YP_004164983.1| 23S rRNA m(2)a-2503 methyltransferase [Cellulophaga algicola DSM
           14237]
 gi|319422376|gb|ADV49485.1| 23S rRNA m(2)A-2503 methyltransferase [Cellulophaga algicola DSM
           14237]
          Length = 347

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 206/370 (55%), Gaps = 24/370 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M+ +KK+ +  + +E+L E  +  G        R +Q+++W++ +G   F+ M+++S+E 
Sbjct: 1   MDTIKKKDIRALTKEQLREFFVTNGDKA----FRGNQVYEWLWQKGAHSFEAMTNVSKET 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R +L Q+F I + ++   + S DGT K  +R     I     +E+V IP K+R T CVSS
Sbjct: 57  RDMLEQNFVINHIKVDVMQRSNDGTIKNAVRLHDDLI-----VESVLIPTKTRSTACVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL C FC T   K +RNL  +EI  QV+              I+        R +S
Sbjct: 112 QVGCSLDCKFCATSRLKRMRNLNPDEIYDQVVA-------------IDNESRLYFNRPLS 158

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           NIV MGMGEPL N++NV K++ + +   GL  S +RI +STSG    I ++ + E+   L
Sbjct: 159 NIVFMGMGEPLMNYNNVLKAIDMITSPEGLGMSPKRIVVSTSGVPKMIRKMADDEVKFKL 218

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+  +++R  ++P N  + L  L  + +++   +   RIT+EYV+ KGINDS +D 
Sbjct: 219 AVSLHSAIDEIRTSIMPFNANFTLTDLRQSLQYWYAKT-RSRITYEYVIWKGINDSQKDV 277

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+   K  P+K+NLI +NP    E+  +    I  +   +++   +  +R  RG DI 
Sbjct: 278 DALVDFCKFAPSKVNLIEYNPIDDGEFQQASNAAIDMYVNTLEQHNIAVTVRRSRGKDID 337

Query: 360 AACGQLKSLS 369
           AACGQL + S
Sbjct: 338 AACGQLANKS 347


>gi|258592798|emb|CBE69107.1| putative pyruvate formate lyase activating enzyme 2 (yfgB) [NC10
           bacterium 'Dutch sediment']
          Length = 372

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 151/368 (41%), Positives = 216/368 (58%), Gaps = 26/368 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K  L G+  EE+E  +   G P      R  Q++ WIY R    F  M+D+   +R  L
Sbjct: 20  NKIDLKGLSLEEMERVVSDHGEPV----YRGRQLFHWIYARDAHTFAEMTDLPIALRARL 75

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +H +I     + ++IS DGTRK+LL           +IETV IP++ R T C+S+QVGC
Sbjct: 76  AEHTAIGALTPLAKEISRDGTRKYLLGCTDER-----QIETVLIPDERRLTACLSTQVGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C+FC TG    VR+L + E++ QVL  +  L                 G +I N+V+
Sbjct: 131 ALACAFCLTGKMGFVRHLQSGEVVDQVLALQRDL---------------QPGERIGNLVL 175

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N+D   K+L+I S  MGL++  RRITLST G VP I R+G+  +GV LA+SL
Sbjct: 176 MGMGEPLHNYDATVKALTILSHPMGLAYPPRRITLSTVGLVPEIVRLGQSGLGVNLAVSL 235

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ LVPINR+YPL+ L+ A R YP L + RR+TFEYV++ G+ND   DA  L+
Sbjct: 236 HASTDELRDRLVPINRRYPLKELMVALRAYP-LPSRRRLTFEYVLIDGVNDRSEDARELV 294

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  K+NL+  N  P   +    Q+ +  F   ++ +   + IR  RGLDI AACG
Sbjct: 295 KLLRGLRCKVNLLSLNEAPAIPFRRPSQERVEMFQRILRSADILATIRESRGLDISAACG 354

Query: 364 QLKSLSKR 371
            L +   +
Sbjct: 355 LLATEPDQ 362


>gi|307244457|ref|ZP_07526566.1| 23S rRNA m2A2503 methyltransferase [Peptostreptococcus stomatis DSM
           17678]
 gi|306492150|gb|EFM64194.1| 23S rRNA m2A2503 methyltransferase [Peptostreptococcus stomatis DSM
           17678]
          Length = 345

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 144/369 (39%), Positives = 210/369 (56%), Gaps = 31/369 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L  +  EEL++ L++IG      + R SQI+ WIY R IRDF  M++I + +R  L 
Sbjct: 5   KFVLKNLTEEELKDFLVEIG----EKKFRGSQIYSWIY-RNIRDFDEMNNIPKSLRTKLQ 59

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +H  I   E      S  DGT+K+L R     I     IETV +   +R T+CVS+QVGC
Sbjct: 60  EHAVIGNIEKDLRLDSKIDGTKKYLFRLNDGNI-----IETVAMDYDTRLTVCVSNQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    L RNL A EIL Q++  +                   +G+++SNIVM
Sbjct: 115 RMGCRFCASTIDGLSRNLEAWEILDQIIKVQE-----------------DLGKRVSNIVM 157

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MG GEPL N++N  + L + ++  GL+   R ITLST G V  I  + + EI + LAISL
Sbjct: 158 MGSGEPLDNYENSIRFLKLVNEKNGLNIGNRHITLSTCGIVDRIRDLADLEIPINLAISL 217

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  ++ R  ++P+  KY +E +I+AC +Y G +N  RITFEY ++KG+NDS ++A  ++
Sbjct: 218 HSPFDEERQKIMPVANKYKVEQIIEACHYYIGKTNR-RITFEYSLIKGVNDSKKEAERIV 276

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKG+   +NLIP NP    ++   D   I  F   ++++     IR   G DI  ACG
Sbjct: 277 KLLKGMLCHVNLIPINPIEERDFEKPDILYINKFKAYLEKNNIPVTIRNSMGADISGACG 336

Query: 364 QL-KSLSKR 371
           QL +S+SKR
Sbjct: 337 QLRRSVSKR 345


>gi|15902720|ref|NP_358270.1| hypothetical protein spr0676 [Streptococcus pneumoniae R6]
 gi|116516867|ref|YP_816163.1| hypothetical protein SPD_0669 [Streptococcus pneumoniae D39]
 gi|81588140|sp|Q8DQG7|RLMN_STRR6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|122278951|sp|Q04LD5|RLMN_STRP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|15458264|gb|AAK99480.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116077443|gb|ABJ55163.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
           D39]
          Length = 361

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 209/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QV C+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVDCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +   K  R+L   EI+ Q++L +    +                 ++S+IV+M
Sbjct: 113 IGCTFCASDLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV   +   +D  G++   R IT+STSG    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFVCTINDDKGMAIGARHITVSTSGLAHKIRNFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +NDS   AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDSVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEYGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+S + +  +
Sbjct: 340 CGQLRSNTMKRDR 352


>gi|332976466|gb|EGK13312.1| cfr family radical SAM enzyme [Desmospora sp. 8437]
          Length = 350

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 124/364 (34%), Positives = 198/364 (54%), Gaps = 25/364 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +       + +  +  +G P      R  Q+  W+YV+ +  F  M+++S+ +R  L +
Sbjct: 3   PNAYDWTHADWKRWMKGVGEPA----FRADQVMNWLYVKRVPSFADMTNLSRGLRERLER 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F +   E +  + S DGT K+L +           IETV +      ++CV++QVGC +
Sbjct: 59  DFQLKPLETITVRQSADGTIKFLFQLFD-----GHAIETVIMRHNYGNSVCVTTQVGCRV 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L R+L A E++ QVL A+  L  +              G ++ ++V+MG
Sbjct: 114 GCTFCASTLGGLKRDLKAGEVVAQVLEAQRYLDRW--------------GERVHSVVIMG 159

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEP  N+D   + + +  D  GL+ ++RRIT+STSG VP+I R  EE + V LAISLHA
Sbjct: 160 IGEPFENYDASVQFMRVIQDEKGLNLAQRRITVSTSGIVPSIYRFAEEGLQVGLAISLHA 219

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +  LR  L+P++ +YPLE L+ ACR+Y   +   RIT+EY ++ G ND+P  A  L ++
Sbjct: 220 PNQALRKRLMPVSYRYPLEELLAACRYYVQKTGR-RITYEYALIGGKNDAPEHAHELGRL 278

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G  + INLIP N  P   Y  + +  I  F + ++    ++ IR   G DI AACGQL
Sbjct: 279 LEGSGSLINLIPVNHVPERNYTRTPRNRIFKFRDILQSYNLNTTIRREHGSDIEAACGQL 338

Query: 366 KSLS 369
           ++  
Sbjct: 339 RAQH 342


>gi|119488056|ref|ZP_01621500.1| hypothetical protein L8106_11682 [Lyngbya sp. PCC 8106]
 gi|119455345|gb|EAW36484.1| hypothetical protein L8106_11682 [Lyngbya sp. PCC 8106]
          Length = 348

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 131/362 (36%), Positives = 187/362 (51%), Gaps = 31/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+G+  EEL   + + G P      R  Q+++WIY +G +    ++   ++ R  +  
Sbjct: 9   VPLLGLSLEELTNWVQEQGQPA----YRGKQLYQWIYQKGSKSLSEITVFPKQWRETVA- 63

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +FSI    I    ++ D T K+LL+     I     IETV IP + R T+CVSSQVGC +
Sbjct: 64  NFSIGRSTIHYRSVAPDQTVKYLLKLADNNI-----IETVGIPTEKRLTVCVSSQVGCPM 118

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG    VRNL   EI+ QVL  +                    GR++S+IV MG
Sbjct: 119 ACDFCATGKGGFVRNLETHEIIDQVLTVQE-----------------DFGRRVSHIVFMG 161

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
           MGEPL N  NV  ++   +  +G    +R IT+ST G    I      ++ V LA+SLHA
Sbjct: 162 MGEPLLNTKNVVAAIKSLNQDVG--IGQRMITVSTVGIPQQIRDFAGYQLQVTLAVSLHA 219

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +  LR  L+P    YPLE LI  CR Y   +  RR++FEY++L   ND P  A+ L   
Sbjct: 220 SNQKLREKLIPSADHYPLEKLIADCREYVN-TTGRRVSFEYILLANFNDKPEHAIELATH 278

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G  + +NLIP+NP    +Y       I TF + +K    +  +R  RGL+  AACGQL
Sbjct: 279 LRGFQSHVNLIPYNPISEVDYQRPTSPQINTFMKALKERHIAVSVRYSRGLEADAACGQL 338

Query: 366 KS 367
           ++
Sbjct: 339 RA 340


>gi|158522322|ref|YP_001530192.1| radical SAM protein [Desulfococcus oleovorans Hxd3]
 gi|205829745|sp|A8ZV25|RLMN_DESOH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|158511148|gb|ABW68115.1| radical SAM enzyme, Cfr family [Desulfococcus oleovorans Hxd3]
          Length = 371

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 155/364 (42%), Positives = 211/364 (57%), Gaps = 26/364 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           +  + R    + L    I       R  Q++KW++V     F  M++IS+ VR LL + F
Sbjct: 28  IQNLTRARFADWLNAHNI----APYRADQVFKWLFVHRAESFDQMTNISKPVRTLLAESF 83

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I   +I   + S DGTRK+L             IE+V IPE+   TLCVS+QVGC+  C
Sbjct: 84  IIGRLKIARTQQSADGTRKYLFELSD-----GEHIESVLIPEEDHFTLCVSTQVGCAQGC 138

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
           +FC T  +  VRNLT  EI  QVL A   L               +   +++NIV+MGMG
Sbjct: 139 AFCMTAKKGFVRNLTPAEITGQVLGALKTL---------------APEERLTNIVLMGMG 183

Query: 189 EPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           EPL N+DNV  SL    D   GL FS RR+TLSTSG VP +A +G    V LA+SL+A  
Sbjct: 184 EPLANYDNVITSLDTICDGDCGLQFSTRRVTLSTSGLVPRMAPLGLATTVNLAVSLNATD 243

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           N  R++L+PIN+ YP+E+L++ACR YP LSN R+ITFEY+++ G+NDS +DAL L+K+L+
Sbjct: 244 NKTRDMLMPINKTYPIEVLLEACRTYP-LSNRRKITFEYILMAGVNDSEKDALRLVKLLR 302

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            I AK+NLIPFN   G  +   D   I  F + +    Y+   R  +G DI AACGQL +
Sbjct: 303 SIKAKVNLIPFNEHEGAAFKRPDDAAIERFKQILHDRQYTVMTRQSKGADISAACGQLAA 362

Query: 368 LSKR 371
             K+
Sbjct: 363 DIKK 366


>gi|206900837|ref|YP_002251150.1| radical SAM enzyme, Cfr family [Dictyoglomus thermophilum H-6-12]
 gi|254807170|sp|B5YF42|RLMN_DICT6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|206739940|gb|ACI18998.1| radical SAM enzyme, Cfr family [Dictyoglomus thermophilum H-6-12]
          Length = 348

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 212/368 (57%), Gaps = 28/368 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++    +E+ + L   G P      R  QI+ W+Y + I +   M+++ + +R  + ++
Sbjct: 3   NILSFDIDEIRDILRGWGEPS----YRADQIFDWVYKKLILNPSSMTNLPKGLRQKIAEY 58

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           FS   P++V  KI+ +G T+K+LL            IETV I  K+R T+CVS QVGC++
Sbjct: 59  FSFDIPKVV--KITGEGNTKKYLLELED-----GENIETVLISHKNRNTVCVSVQVGCAI 111

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L RNL   EI+ Q++L +  L +               G +ISN+V MG
Sbjct: 112 GCKFCATGLVGLRRNLNTHEIVGQIILIQKELFE--------------KGDRISNVVYMG 157

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEPL N+DNV KS+ I +   GL+   + ITLST G VP I ++GEE + V LAISLHA
Sbjct: 158 MGEPLLNYDNVVKSIRIINREWGLNIGSKHITLSTIGIVPKIYQLGEEDLKVRLAISLHA 217

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+LR+ ++PIN++YP+E L+++  +Y   +   R+TFEYV++K  ND    A+ L  +
Sbjct: 218 PNNELRSKIIPINKEYPIEKLLESAFYYAEKTGR-RVTFEYVLIKNFNDREEHAIELAGL 276

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LK  P  +NLIP+N  P   +  SD KDI  F + +  +G +  +R   G  I A CGQL
Sbjct: 277 LKNKPVHVNLIPWNKVPEYPWETSDLKDIFKFKKILSDAGINVTLRISYGSRIKAGCGQL 336

Query: 366 KSLSKRIP 373
           ++L  +  
Sbjct: 337 RALYLKSK 344


>gi|169349817|ref|ZP_02866755.1| hypothetical protein CLOSPI_00555 [Clostridium spiroforme DSM 1552]
 gi|169293385|gb|EDS75518.1| hypothetical protein CLOSPI_00555 [Clostridium spiroforme DSM 1552]
          Length = 342

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 121/363 (33%), Positives = 190/363 (52%), Gaps = 28/363 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +++     E+L E    I    +    R  Q++ W+Y +  R F  MSD+S+E+R+ L  
Sbjct: 2   KNIYDYSLEQLTEYFQSI----KQKPFRAKQVFSWLYQKDARSFDDMSDLSKELRNSLKD 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F+    +I ++++S DGT K+L       +     IE+V +      +LCV+SQVGC++
Sbjct: 58  EFNFDILKIKEKQVSRDGTIKYLFELLDGSL-----IESVLMIHDYGKSLCVTSQVGCNM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +G     R+L+  EI+ Q++  +                     ++IS++V+MG
Sbjct: 113 KCKFCASGLLNKQRDLSPGEIVSQIIKIQQ-----------------DTNQRISHVVVMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  N+DNV   + I +   GL+   R IT+ST G +  I R  +E I   LAISLHA
Sbjct: 156 TGEPFDNYDNVMDFVRIINHPNGLAIGARHITISTCGLIKGIERYSDEGIQTNLAISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN L+PIN+ YP++ L      Y   +N  R+TFEY++LK IND    A  L   
Sbjct: 216 PNDEIRNELMPINKIYPMDKLRQVVSDYIDKTNR-RVTFEYILLKDINDDIIYARQLAHY 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+ A +NLIP+N      Y  S ++    F   + R   +  +R   G DI  ACGQL
Sbjct: 275 LRGLNAYVNLIPYNSVDEHGYQPSKKEQAELFKSELLRLHINVTMRKEHGRDIDGACGQL 334

Query: 366 KSL 368
           ++ 
Sbjct: 335 RAK 337


>gi|223038329|ref|ZP_03608623.1| radical SAM enzyme, Cfr family [Campylobacter rectus RM3267]
 gi|222880186|gb|EEF15273.1| radical SAM enzyme, Cfr family [Campylobacter rectus RM3267]
          Length = 416

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 143/380 (37%), Positives = 215/380 (56%), Gaps = 42/380 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+     EL+E L            R  QI++W+Y +    F  M ++ +++R  L Q
Sbjct: 2   KNLLDFTLNELKEQL--------SPPFRAKQIFEWLYKKNATSFDEMLNLPKDLRANLVQ 53

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
            F     + V  + S DG+ K+L           + IE+V +P K              R
Sbjct: 54  EFYFDPLKCVKFEQSADGSIKYLFELKD-----GLRIESVLLPMKEEQTNEQGKISRHAR 108

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC + C+FC T    LVRNLTA EI+ Q+L  +                  
Sbjct: 109 YTVCVSSQVGCKMGCAFCLTAKGGLVRNLTAGEIVGQILWIKREN--------------K 154

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  N+V MGMGEPL N  +V K++ I +++ GL+ S RR T+STSG    I ++GE
Sbjct: 155 IPYERRINVVYMGMGEPLDNLASVSKAVKILTENDGLAISPRRQTVSTSGLGNQIKKLGE 214

Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
            ++GV+LAISLHAV+++LR+ L+PIN+ Y +E ++DA R +P +   +R+ FEY++++G+
Sbjct: 215 MDLGVLLAISLHAVTDELRSRLMPINKAYNIEAVMDAVRGFP-IDMRKRVMFEYLVIRGL 273

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           NDS  DA  L+++L GI AK+NLI FNP  G E+   +  D+V F + +   G +  IR 
Sbjct: 274 NDSLADAKKLVRLLHGIRAKVNLIYFNPHEGSEFERPELSDMVKFQDYLCAHGITCTIRQ 333

Query: 353 PRGLDILAACGQLKSLSKRI 372
            +GLDI AACGQLK  S++I
Sbjct: 334 SKGLDISAACGQLKQRSEKI 353


>gi|313901449|ref|ZP_07834906.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468277|gb|EFR63734.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter subterraneus
           DSM 13965]
          Length = 353

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 128/368 (34%), Positives = 200/368 (54%), Gaps = 26/368 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +     +G++ EEL   L   G P      R  QI+ W + RG+  F  M+D+ +E+R  
Sbjct: 1   MSTRDWVGLLPEELARELEAWGQPA----YRGRQIFAWFHRRGVTRFSAMTDLPRELRER 56

Query: 64  LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L +      P +   ++   DGTRK+LL            IETV +  +   +LCVSSQV
Sbjct: 57  LAEQGDPAVPAVRRLQVDPEDGTRKYLLEL-----ADGQLIETVLMRHRYGLSLCVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C FC +    LVRNLTA E+  Q+L+    L +               G ++S++
Sbjct: 112 GCAMGCRFCASTLGGLVRNLTAAEMAGQLLVVNRDLAE--------------RGERVSHL 157

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG+GEPL N D   + L +A   +G   S R +T+STSG VP I ++  E + + LA+
Sbjct: 158 VVMGIGEPLQNLDATLQFLRVAHHPLGAGISYRHMTVSTSGLVPRIRQLAREGLPITLAV 217

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA ++ LR+ L+P+NR++P+  L+ ACR Y   +   RITFEYV+++ +ND P  A  
Sbjct: 218 SLHAPNDALRSWLMPVNRRWPIAELMAACREYVEETGR-RITFEYVLIEDVNDRPEHARE 276

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L +++  + A +NLIP+NP     +     + +  F+  ++R G +  +R   G  I AA
Sbjct: 277 LARLVGPLHAHVNLIPWNPVSERPFKAPSPERVQAFAAELRRQGVNVTVRRELGQRIEAA 336

Query: 362 CGQLKSLS 369
           CGQL+  +
Sbjct: 337 CGQLRRRA 344


>gi|307153286|ref|YP_003888670.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7822]
 gi|306983514|gb|ADN15395.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7822]
          Length = 350

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 123/362 (33%), Positives = 189/362 (52%), Gaps = 31/362 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   +EL E + + G P      R  Q+++W+Y +G R    +S   +  R  +   +
Sbjct: 18  LLGKSLQELTEWVQEQGQPA----YRGKQLYQWLYEKGARSLSDISVFPKSWREEVKD-Y 72

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I   +I    I+ D TRK+LLR     I     IETV IP + R T+CVSSQVGC + C
Sbjct: 73  PIGRSQIHHRSIAPDKTRKYLLRLQDGLI-----IETVGIPTEKRLTVCVSSQVGCPMDC 127

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNL   EI+ QVL  +                     R++S++V MGMG
Sbjct: 128 DFCATGKGGFTRNLAPHEIVDQVLTVQE-----------------DFQRRVSHVVFMGMG 170

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVS 247
           EPL N   V  +++I +  +G+    R +T+ST G    I ++   ++ V  A+SLHA +
Sbjct: 171 EPLLNLKAVVSAVNILNQDVGIGM--RSLTISTVGLPAKIEQLARHQLQVTFAVSLHAPN 228

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  + YPL+ L++ C  Y  ++   R+TFEY++L G+ND P  A  L   ++
Sbjct: 229 QALREQLIPSAKHYPLKNLLEDCHKYVEMTKR-RVTFEYILLAGVNDLPEQAQELAVQIR 287

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP    +Y   + + I  F   +++   +  +R  RGL+  AACGQL++
Sbjct: 288 GFQSHVNLIPYNPISEADYKRPNSQRINAFLNILQQENIAVSVRYSRGLETDAACGQLRA 347

Query: 368 LS 369
             
Sbjct: 348 AK 349


>gi|257461212|ref|ZP_05626310.1| radical SAM enzyme, Cfr family [Campylobacter gracilis RM3268]
 gi|257441586|gb|EEV16731.1| radical SAM enzyme, Cfr family [Campylobacter gracilis RM3268]
          Length = 369

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 139/379 (36%), Positives = 211/379 (55%), Gaps = 42/379 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +++     +ELE  +          + R  QI++WIY + + DF  M ++ +E+R  L Q
Sbjct: 2   KNIFDFTMKELENFV--------EPKFRAKQIYEWIYKKNVDDFAQMLNLPKEIRQSLAQ 53

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
           +F +   + V  + S DG+ K+L       +     IE+V +P K              R
Sbjct: 54  NFYLDPLKCVRSETSSDGSIKYLF-----ALKDGKTIESVLLPMKDELRDENEKIIRHAR 108

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            ++CVSSQVGC + CSFC T     VRNLT  EI+ Q+ L + +                
Sbjct: 109 YSICVSSQVGCKIGCSFCLTAKGGFVRNLTPGEIVAQIWLIKKMNAI------------- 155

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  N+V MGMGEPL N DNV K++ I  ++ GL+ + RR T+STSG    I ++GE
Sbjct: 156 -PYERRVNVVYMGMGEPLNNLDNVAKAVQILKENDGLAIAPRRQTISTSGLSTQIKKLGE 214

Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
            ++GV+LAISLHAV ++LR  L+PINR Y +  ++ A R +P +   +R+ FEY+M+ G+
Sbjct: 215 MDLGVLLAISLHAVDDELREKLMPINRAYNIASIMQAVREFP-IDLRKRVMFEYLMIDGV 273

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND P DA  L+K+L GI AK+NLI FNP  G  +     ++++ F + +   G +  IR 
Sbjct: 274 NDRPSDAKTLVKLLHGIRAKVNLIYFNPHEGSSFGRPSPENMIKFQDYLCAHGITCTIRQ 333

Query: 353 PRGLDILAACGQLKSLSKR 371
            +GLDI AACGQLK  +++
Sbjct: 334 SKGLDISAACGQLKQRNEQ 352


>gi|239904707|ref|YP_002951445.1| hypothetical protein DMR_00680 [Desulfovibrio magneticus RS-1]
 gi|259491985|sp|C4XTP4|RLMN_DESMR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|239794570|dbj|BAH73559.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 351

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 134/362 (37%), Positives = 201/362 (55%), Gaps = 22/362 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +LI +   ELE  ++ +G P      R  Q+W+W++ +  R+  GM+D+S+ +R  L +
Sbjct: 2   TNLIDLTFHELESLIVSLGEPP----YRARQVWQWLWQKRCREIAGMTDVSKALRARLEE 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I +P +   + S DGT K+LL      +     +E V IPEK   T C+S+QVGC++
Sbjct: 58  VAEIRWPVVEMVRESRDGTVKFLL-----ALDDGERVECVLIPEKDHYTACLSTQVGCAM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG     RN+T  E+L QVL+ R  L D              V   + N+V MG
Sbjct: 113 GCGFCATGMLGFRRNMTPGEMLGQVLVGRQYLTD------------KGVELGLRNLVFMG 160

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N++N+ K+L       GL FS RRIT+ST+G   ++  +G      LAISLHA 
Sbjct: 161 MGEPLLNYENLLKTLEALHHPQGLDFSGRRITVSTAGVARHLLDLGRTGLCSLAISLHAP 220

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +   R  ++P   +  L+ L+D    YP L    R+TFEY++L G+ND+  DA  L+++L
Sbjct: 221 TQAQRERIMPGAARLELDKLMDLLAQYP-LKPRERLTFEYLLLAGVNDADADARELVRLL 279

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             + AK+NLI FN  PG  Y   D+  ++ F + +K  G ++ +R  +G DI AACGQL+
Sbjct: 280 SRVKAKVNLIVFNATPGLPYSPPDEARVLAFQDILKSKGLTATLRKSKGSDIAAACGQLR 339

Query: 367 SL 368
           + 
Sbjct: 340 AE 341


>gi|255657702|ref|ZP_05403111.1| radical SAM enzyme, Cfr family [Mitsuokella multacida DSM 20544]
 gi|260849890|gb|EEX69897.1| radical SAM enzyme, Cfr family [Mitsuokella multacida DSM 20544]
          Length = 347

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 130/365 (35%), Positives = 197/365 (53%), Gaps = 24/365 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + + G+  EEL+EAL    +P    + R  QI +W+Y RG   F  M+++S+++R  L+ 
Sbjct: 2   KDIFGLTVEELQEALQPFSLP----KYRARQIAEWMYQRGATGFADMTNLSKKLREELSG 57

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F I  P+  D   S DG T K+LL F          +ETV + +    ++CVS+Q GC+
Sbjct: 58  AFVIGRPKCKDRLDSSDGHTTKFLLEFTD-----GTAVETVLMRQPYGNSICVSTQAGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    + RNLT  EIL Q ++   +L                 G K+  +V+M
Sbjct: 113 MGCAFCASTLHGMARNLTTGEILSQAIVISDMLR------------AEGQGEKVDTVVIM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N++NV   + +  +   L  S R ITLSTSG VP + ++ EE I + L++SLH
Sbjct: 161 GSGEPLMNYENVLGFIRLLHEDYVLGLSYRSITLSTSGIVPQMYKLAEEGIPISLSVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A   +LR+ L+PINRKYPL  ++ A RHY  ++   R+T+EY+++  +ND    A  L+ 
Sbjct: 221 APEQELRSTLMPINRKYPLVDVVRAARHYAEVTKR-RVTYEYILIDRVNDGEEQARELVS 279

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+G  A +NLIP NP      L      I  F   +     +  +R   G DI AACGQ
Sbjct: 280 LLRGQLASVNLIPINPVAERHLLRPSAARIDWFEHYLTAHHINVTVRREMGTDIQAACGQ 339

Query: 365 LKSLS 369
           L++  
Sbjct: 340 LRNKH 344


>gi|225856442|ref|YP_002737953.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pneumoniae P1031]
 gi|254807219|sp|C1CJL5|RLMN_STRZP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|225724466|gb|ACO20318.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae P1031]
          Length = 361

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 122/364 (33%), Positives = 203/364 (55%), Gaps = 26/364 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLTHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQGIVQESADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 +IS+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV       +D  G++   R IT+S SG    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKSSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAA 339

Query: 362 CGQL 365
           CGQL
Sbjct: 340 CGQL 343


>gi|139439867|ref|ZP_01773232.1| Hypothetical protein COLAER_02266 [Collinsella aerofaciens ATCC
           25986]
 gi|133774795|gb|EBA38615.1| Hypothetical protein COLAER_02266 [Collinsella aerofaciens ATCC
           25986]
          Length = 350

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 192/372 (51%), Gaps = 29/372 (7%)

Query: 1   MNFLKK-ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
           MN   K + +  + + ++ E + ++G P      R  Q+ +W++ + +  F  M+++ + 
Sbjct: 1   MNPRTKSQDIRDLSQNDIRELVAELGQPA----FRAKQLIEWVFEKNVCSFDDMTNLPKA 56

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
            R  L + F+   P  + +++S DG+RK+LL +        V +ETV +P +++ ++CVS
Sbjct: 57  FREQLKEAFAFDTPTELTKQVSKDGSRKYLLEYHD-----GVSVETVGMPRRNKLSVCVS 111

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +Q GC + C+FC TG   L R+LTA+EI+ QVL   +  G+                 + 
Sbjct: 112 TQAGCGMGCAFCATGLNGLKRSLTAQEIVDQVLHVSNDFGE-----------------RA 154

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
           +++V MG GEP  N+D V K+L I +D  G+    R +T+STSG +P I +  +      
Sbjct: 155 TSVVFMGQGEPFANYDEVLKALRILNDPDGIGIGARHLTVSTSGVIPGIRKFADIPEQFT 214

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLH+     RN L+P  +KY L  L +A + Y   +   R T+EY M++G+ND+  +
Sbjct: 215 LAVSLHSAIQSTRNKLMPGVKKYTLFRLHEALQLYTEKTGR-RPTYEYAMIEGVNDTNPE 273

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
              L    +G    +NLI  N   G     S    +      ++  G  + IR  RG DI
Sbjct: 274 MQALCDFCEGTLCHVNLIQLNDIEGSPLKPSPIHKVEDLQRRLESRGIETTIRNSRGNDI 333

Query: 359 LAACGQLKSLSK 370
            AACGQLK   K
Sbjct: 334 DAACGQLKQRFK 345


>gi|182683687|ref|YP_001835434.1| hypothetical protein SPCG_0717 [Streptococcus pneumoniae CGSP14]
 gi|205829907|sp|B2INF0|RLMN_STRPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|182629021|gb|ACB89969.1| hypothetical protein SPCG_0717 [Streptococcus pneumoniae CGSP14]
          Length = 361

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 207/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLTHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQGIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++++IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVNHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRNFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+ P    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYTPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
            GQL+S + +  +
Sbjct: 340 YGQLRSNTMKRDR 352


>gi|134299564|ref|YP_001113060.1| radical SAM protein [Desulfotomaculum reducens MI-1]
 gi|205829746|sp|A4J582|RLMN_DESRM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|134052264|gb|ABO50235.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfotomaculum reducens
           MI-1]
          Length = 350

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 126/359 (35%), Positives = 195/359 (54%), Gaps = 29/359 (8%)

Query: 14  REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73
           + E++  +  +G        R  QI +W++ +G+  F  M+++S+ +R  LN+  ++   
Sbjct: 16  QSEIQHFIKDLG----EKPFRADQICRWVFAQGVSSFDEMTNLSKGLRAKLNELTTLSQA 71

Query: 74  EIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
            I+  ++S  G T K+L   P         +E+V +      ++CVS+QVGC + C FC 
Sbjct: 72  TILTSQVSAKGDTIKFLFGLPD-----GHAVESVLMKHTYGNSVCVSTQVGCRMGCLFCA 126

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           +    LVRNL+  EI  QVL  +   G+                 ++S+IV+MG GEPL 
Sbjct: 127 STINGLVRNLSPGEIYDQVLGIQRETGE-----------------RVSHIVIMGAGEPLD 169

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLR 251
           NFDNV K L       GL+   R ITLST G VP +  +   ++ + LA+SLHA ++DLR
Sbjct: 170 NFDNVLKFLENIHAEYGLNIGYRHITLSTCGLVPRMQELALRKLPITLAVSLHAPNDDLR 229

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
           + LVPINR+Y +  LI+AC +Y  ++   RITFEY +L GINDS      L  +LK +  
Sbjct: 230 DKLVPINRRYKIHQLIEACSNYIEITGR-RITFEYALLSGINDSDEHVRQLAALLKNLLC 288

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
            INLIP NP    E++ +  + +  F + +++ G +  +R   G DI AACGQL+   +
Sbjct: 289 HINLIPVNPVEEKEFIRTPPEKVERFRQYLEKVGLNVTVRRELGGDIDAACGQLRRRYE 347


>gi|260893173|ref|YP_003239270.1| radical SAM enzyme, Cfr family [Ammonifex degensii KC4]
 gi|260865314|gb|ACX52420.1| radical SAM enzyme, Cfr family [Ammonifex degensii KC4]
          Length = 360

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 124/363 (34%), Positives = 194/363 (53%), Gaps = 28/363 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L  +   E+E  + +     +  R R  Q+  W++V+G+  F+ M+++ + +R  L 
Sbjct: 2   KLDLKSLRFPEIESWVTE---ELKEPRYRAQQLIDWLFVKGVTSFREMTNLPKTLRERLE 58

Query: 66  QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  SI Y  +  ++ S DG T K+L             IETV++      T+CVS+QVGC
Sbjct: 59  EIASITYLSVRVKRCSRDGRTIKFLY-----LARDGAGIETVFMRHPWGRTVCVSTQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +G + L RNL+A EI  QVL  +                   +G +++++V+
Sbjct: 114 RMGCRFCASGAKGLKRNLSAGEIYEQVLRTQ-----------------VELGERVTHVVL 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MGMGEP  N +   + L   +   GL+   R+IT+ST G VP I  + + +    LA+SL
Sbjct: 157 MGMGEPFDNQEATFRFLENITHPAGLNIGARKITISTCGVVPGIRALAQLKRQFGLAVSL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  ++LR+ L+PINR+YPL+ L+ AC  Y   ++  RITF Y M+ GIND   +A  L 
Sbjct: 217 HAPRDELRSWLLPINRRYPLKELLAACWEYVEATHR-RITFAYTMIAGINDGQEEARELA 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG+   +NLIPFN      +       I  F   ++ +G  + +R  RG +I AACG
Sbjct: 276 RLLKGLLCHVNLIPFNLVNERRFRPPSPARIEAFCRILEENGIPATVRRSRGEEIEAACG 335

Query: 364 QLK 366
           QL+
Sbjct: 336 QLR 338


>gi|257438998|ref|ZP_05614753.1| radical SAM enzyme, Cfr family [Faecalibacterium prausnitzii
           A2-165]
 gi|257198583|gb|EEU96867.1| radical SAM enzyme, Cfr family [Faecalibacterium prausnitzii
           A2-165]
          Length = 346

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 202/363 (55%), Gaps = 28/363 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  +  +   EL  AL  +G P      R  QI+ W++ + + +F  M+D  + +   L
Sbjct: 3   QKRCISSLTLAELTAALKAMGQPG----FRAKQIFHWVHQKLVTEFSAMTDQPKTLLAKL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + F I  P+I   + + DGT K+LLR           IETV +      T+CVS+QVGC
Sbjct: 59  EEQFYIAAPKIERRQEAKDGTVKYLLRM-----ADGNCIETVVMRYHYGNTVCVSTQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +     VRNL A EI  ++  A+  +G+                 +IS+IV+
Sbjct: 114 RMGCRFCASTQAGRVRNLEAGEICSEIYTAQKDIGE-----------------RISHIVL 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEPL NFD V + L   S   G++   R I+LST G VP I ++ E+ + + L++SL
Sbjct: 157 MGIGEPLDNFDEVMRFLENISSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSVSL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N++R+ ++P+N  YP+E+L+ A R Y   +  RR++FEY M++G+NDS   A  L 
Sbjct: 217 HAPNNEIRSGMMPVNDAYPVEVLMPAVRRYQE-TTGRRVSFEYSMVRGVNDSDACARQLA 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +++G+ A +NLIP NP  G  Y  +D  ++  F + ++  G ++ +R   G +I AACG
Sbjct: 276 DLIRGMGAHVNLIPINPVDGSPYSATDAANVQRFQKKLESLGVNATVRRRLGSEISAACG 335

Query: 364 QLK 366
           QL+
Sbjct: 336 QLR 338


>gi|111658342|ref|ZP_01409030.1| hypothetical protein SpneT_02000482 [Streptococcus pneumoniae
           TIGR4]
          Length = 349

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 122/362 (33%), Positives = 204/362 (56%), Gaps = 26/362 (7%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN  F +   +  
Sbjct: 1   MQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQR 56

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
             + S DGT K+L   P   +     IETV + +    ++CV++QVGC++ C+FC +G  
Sbjct: 57  IVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLI 111

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
           K  R+L   EI+ Q++L +    +                 +IS+IV+MG+GEP  N++N
Sbjct: 112 KKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVMGIGEPFDNYNN 159

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255
           V       +D  G++   R IT+STSG    I    +E + V LA+SLHA +N+LR+ ++
Sbjct: 160 VLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIM 219

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKI 313
            INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L ++LK I   + +
Sbjct: 220 KINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELTELLKNIKKLSYV 278

Query: 314 NLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
           NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AACGQL+S + + 
Sbjct: 279 NLIPYNPVSEHDQYSRSPKECVLAFYDTLKKKGVNCVVRQEHGTDIDAACGQLRSNTMKR 338

Query: 373 PK 374
            +
Sbjct: 339 DR 340


>gi|331004330|ref|ZP_08327805.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330411396|gb|EGG90811.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 346

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 29/370 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             +  M  EEL+  + ++G        R  Q+++W++   I  F   S++S+  R  L +
Sbjct: 2   TDIKSMDLEELKTFVKELG----EAEFRAKQLFEWLHKSLIDSFDECSNLSKAFREKLKE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             S+   E ++   S  D T+K+L       I     IE+V +  +   ++C+SSQVGC 
Sbjct: 58  VASLTGMEAIEVFESKIDDTKKYLFALEDGNI-----IESVRMKYEHGNSVCISSQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    LVRNL+  E+L QV   + LLG+                 ++SNIV+M
Sbjct: 113 MGCKFCASTLDGLVRNLSVSEMLDQVYKIQKLLGE-----------------RVSNIVVM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEP+ N+DN+ K + I S  MGL+ S+R IT+ST G VP I  + +E + + LA+SLH
Sbjct: 156 GSGEPMDNYDNIVKFVKIISSDMGLNISQRNITVSTCGIVPKIRELADEGLSITLALSLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++++R  ++P+  KY L+ +I AC +Y   +   R+++EY ++ GIND+ ++A+NL+K
Sbjct: 216 APNDEIRKTIMPVANKYALKDVISACDYYFKKTGR-RVSYEYSLVAGINDNIKEAMNLVK 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++ G    INLIP NP    ++  SD+  I  F + +++ G ++ +R   G DI  ACGQ
Sbjct: 275 LVNGRNIHINLIPVNPIKERDFKQSDKLKIKEFKDFLEKKGVNATVRREMGRDIDGACGQ 334

Query: 365 LKSLSKRIPK 374
           L+    +  +
Sbjct: 335 LRRRFIQSER 344


>gi|150390541|ref|YP_001320590.1| radical SAM protein [Alkaliphilus metalliredigens QYMF]
 gi|205829711|sp|A6TRW3|RLMN_ALKMQ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|149950403|gb|ABR48931.1| radical SAM enzyme, Cfr family [Alkaliphilus metalliredigens QYMF]
          Length = 352

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 133/367 (36%), Positives = 204/367 (55%), Gaps = 30/367 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+ +  EE+E   L+IG      + R  Q ++W+  +GI+ ++ M+++S+++   
Sbjct: 1   MDKVDLLSLTMEEMESLFLEIG----EKKFRAKQAFQWV-NKGIKQYEEMTNLSKKLIKQ 55

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L++   I +  I ++ +S  DGT K+L       I     IE V +  K   T C+S+QV
Sbjct: 56  LSEETRITHNRIEEKFVSKIDGTVKYLFLLDDGHI-----IEGVLMKYKHGFTACISTQV 110

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C FC + T  L+RNL A E++ Q+LL +   G+                 +ISNI
Sbjct: 111 GCAMGCQFCASTTGGLIRNLRAGEMIDQILLMQQDQGE-----------------RISNI 153

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V+MG GEPL N+D   + L I +D  GL+   R ITLST G VP I ++G  +I + LAI
Sbjct: 154 VLMGSGEPLHNYDETIRFLKIVNDPEGLNIGNRHITLSTCGLVPEIKKLGALQIPINLAI 213

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA ++ LR   +PI +KY ++ LI +C  Y   +N  RITFEY +++ +ND  ++A  
Sbjct: 214 SLHAPNDQLRKQTMPIAQKYTIDQLIQSCYDYLENNNR-RITFEYALIEDVNDGEKEAHE 272

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L K+LKG+   +NLIP NP     Y  S    +  F + +K +G  + IR   G DI  A
Sbjct: 273 LSKLLKGLLCHVNLIPINPIEERTYQKSKDSQVKKFQQILKSNGIEATIRREMGTDIQGA 332

Query: 362 CGQLKSL 368
           CGQL+  
Sbjct: 333 CGQLRRK 339


>gi|260063739|ref|YP_003196819.1| radical SAM enzyme, Cfr family protein [Robiginitalea biformata
           HTCC2501]
 gi|88783184|gb|EAR14357.1| radical SAM enzyme, Cfr family protein [Robiginitalea biformata
           HTCC2501]
          Length = 347

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 128/369 (34%), Positives = 199/369 (53%), Gaps = 24/369 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M    K+ +  + RE+L +     G+       R +Q+++W++ +G  DF  M+++S ++
Sbjct: 1   MKSEAKKDIRALSREQLRDFFESRGMEA----FRGNQVYEWLWKKGAHDFDAMTNLSLDL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L   F+I + E+   + S DGT K  +R     +     +E+V IP ++R T CVSS
Sbjct: 57  REQLAAEFTINHIEVDRMQRSADGTVKNAVRLHDGLV-----VESVLIPTENRTTACVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL C FC T   K +RNL  +EI  QV++       +              GR +S
Sbjct: 112 QVGCSLDCKFCATARLKRMRNLNPDEIYDQVVVIDRQSRLY-------------FGRPLS 158

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VML 239
           NIV MGMGEPL N+ N+ K++   +   GL  S RRIT+STSG    I R+ EE     L
Sbjct: 159 NIVFMGMGEPLMNYPNMMKAIDKITSEEGLGMSPRRITVSTSGVPKMIRRMAEEGPRFNL 218

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+  +  R+ ++P N  +PL+ L DA  ++   +   R+T+EYV+ +GIND P D 
Sbjct: 219 AVSLHSAIDSTRSTIMPFNETFPLDDLRDAIVYWYEKT-GNRVTYEYVVWEGINDGPEDV 277

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+   +  P K+NLI +NP     +  + +  +  +   ++ +G +  +R  RG DI 
Sbjct: 278 AALLAFCRAAPCKVNLIEYNPIGDDAFRQASEPALQAYINALEGAGITVTVRRSRGKDID 337

Query: 360 AACGQLKSL 368
           AACGQL + 
Sbjct: 338 AACGQLANK 346


>gi|300726533|ref|ZP_07059979.1| radical SAM enzyme, Cfr family [Prevotella bryantii B14]
 gi|299776261|gb|EFI72825.1| radical SAM enzyme, Cfr family [Prevotella bryantii B14]
          Length = 349

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 136/379 (35%), Positives = 208/379 (54%), Gaps = 31/379 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN L+K+SL+G+  +EL++    +G+P         QI KW+Y   ++    M+++S+  
Sbjct: 1   MN-LEKKSLLGLTLDELKDVAKSLGMPA----FTGGQIAKWLYEYHVKSIDEMTNLSKAN 55

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L + ++I   E +D + S DGT K+L             +ETV+IP++ R TLCVSS
Sbjct: 56  RQKLEEQYTIGCAEAIDAQHSVDGTIKYLF-----PTANGKFVETVFIPDEDRATLCVSS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC TG Q    +L+A +IL Q+     +                    K++
Sbjct: 111 QVGCKMNCLFCQTGKQGFEGSLSAADILNQIYSLPEVD-------------------KLT 151

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIV MG GEP+ N DNV ++  I + S G ++S +RIT+S+ G    + R  EE    +A
Sbjct: 152 NIVFMGQGEPMDNLDNVLRATDILTASYGWAWSPKRITVSSVGVRNKLKRFLEESQCHVA 211

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           IS+H+   + R  L+P  R   +E ++D  R+Y   S+ RR+TFEY++  G+NDS   A 
Sbjct: 212 ISMHSPIPEQRAELMPAQRGMSIEEVVDLLRNY-DFSHQRRLTFEYIVFGGVNDSTTHAR 270

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            +IK+LKG+  +INLI F+  P      +D+K +  F + +   G  + IR  RG DI A
Sbjct: 271 EIIKLLKGLDCRINLIRFHQIPEVALHGADEKTMENFRDYLTNHGIHTTIRASRGQDIFA 330

Query: 361 ACGQLKSLSKRIPKVPRQE 379
           ACG L S SK+I K+   +
Sbjct: 331 ACGLL-STSKKIGKIRHDQ 348


>gi|154497983|ref|ZP_02036361.1| hypothetical protein BACCAP_01963 [Bacteroides capillosus ATCC
           29799]
 gi|150272973|gb|EDN00130.1| hypothetical protein BACCAP_01963 [Bacteroides capillosus ATCC
           29799]
          Length = 340

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 192/367 (52%), Gaps = 32/367 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             +  M + E+ +   ++G P      R  Q+++W++ RG   F  M+++S+ +R  L+ 
Sbjct: 2   TDIKSMNQAEMADYFRELGEPA----FRAKQVFQWLH-RGAVSFDDMTNLSKGLREKLSG 56

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              I  P +  +++S  DGT K+L +           IETV +      T+C+SSQVGC 
Sbjct: 57  SCYITAPAVERKQVSAQDGTIKYLWKLRD-----GNCIETVLMRYHHGNTVCISSQVGCR 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +     VRNLT  E+L QVL  +                    G  ISNIV+M
Sbjct: 112 MGCAFCASTLGGKVRNLTPSEMLDQVLFTQ-----------------LDSGVPISNIVLM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           G+GEPL NFD V + L + +   GL+   R I+LST G V  I ++ +  + + L++SLH
Sbjct: 155 GIGEPLDNFDTVMRFLELVNHPDGLNIGMRHISLSTCGLVEKIDKLADLRLQLTLSVSLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++ R+ ++P+N+   +E L  +CR Y   +   RI++EY M+ G+NDS   A  L K
Sbjct: 215 APDDETRSRIMPVNKAVGVERLFRSCRQYFEKTGR-RISYEYAMIDGVNDSDWQADLLAK 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            LKG P  +NLIP N         S  + +  F + +++ G +  +R   G DI A+CGQ
Sbjct: 274 HLKGTPGHVNLIPLNEVKESPLKPS--RRVEAFQKRLEQHGITVTVRRKLGGDIDASCGQ 331

Query: 365 LKSLSKR 371
           L+  + +
Sbjct: 332 LRRKAMQ 338


>gi|148985883|ref|ZP_01818977.1| hypothetical protein CGSSp3BS71_00907 [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922029|gb|EDK73153.1| hypothetical protein CGSSp3BS71_00907 [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799783|emb|CBW32352.1| Radical SAM protein [Streptococcus pneumoniae OXC141]
          Length = 361

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 207/373 (55%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IE V + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IEIVLMCQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++++IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVNHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV       +D  G++   R IT+STSG    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+  + +  +
Sbjct: 340 CGQLRFNTMKRDR 352


>gi|225569231|ref|ZP_03778256.1| hypothetical protein CLOHYLEM_05313 [Clostridium hylemonae DSM
           15053]
 gi|225162030|gb|EEG74649.1| hypothetical protein CLOHYLEM_05313 [Clostridium hylemonae DSM
           15053]
          Length = 356

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 198/367 (53%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+ +      +L+  +  +G        R+ QI++W++VR    F  M+++S+++R  
Sbjct: 1   MIKKDICSYDHGQLKNEIEAMG----EKSFRSRQIYEWLHVRLADSFDEMTNLSKKLREQ 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L+  + I    + + +IS  D T K+L R           +E+V +      ++C+SSQ 
Sbjct: 57  LSAEYEIREVTLTERQISSVDPTEKFLFRLC-----EGNMVESVLMRYSYGNSVCISSQA 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L+RNLT  E+L Q+   + L+G+                 +ISN+
Sbjct: 112 GCRMGCRFCASTLDGLMRNLTPSEMLRQIYQIQKLIGE-----------------RISNV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL N+DN  + + + SD  GL+ S+R IT ST G VPN+ R+ EE + + LA+
Sbjct: 155 VVMGTGEPLDNYDNFLQFIRMVSDEHGLNISQRNITASTCGIVPNMRRLAEEDLQITLAL 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH  + + R  L+P+  KY L  +++AC +Y   +   RITFEY +++G+ND P D   
Sbjct: 215 SLHGSTQEKRKALMPVANKYELAEVLEACDYYFEKTGR-RITFEYSLVQGVNDQPEDVRE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LK     +NLIP NP     ++  D K+   F   ++++G +  IR  RG DI  A
Sbjct: 274 LTALLKRRNCHLNLIPVNPIKERNFVRPDSKNAHEFKNKLEKNGINVTIRRERGSDIDGA 333

Query: 362 CGQLKSL 368
           CGQL+  
Sbjct: 334 CGQLRRR 340


>gi|256830852|ref|YP_003159580.1| Cfr family radical SAM protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256580028|gb|ACU91164.1| radical SAM enzyme, Cfr family [Desulfomicrobium baculatum DSM
           4028]
          Length = 360

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 142/379 (37%), Positives = 223/379 (58%), Gaps = 23/379 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++ +   ELEEA+  +G    H   R  Q+W+W++ +G+R+F  M++++++ R  L +
Sbjct: 2   RNILELTCPELEEAVQAMG----HQSFRARQLWQWLWRKGVREFSAMTNLARDFREQLMR 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            +++ +PE+ + + S DGT K LLR     +     +ETV IP+K R T C+S Q+GC +
Sbjct: 58  EWALDWPEVHEVQTSSDGTVKLLLRLADGAL-----VETVLIPDKERYTQCLSCQIGCPM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG     RN+T  EI  QVL+AR  L                +G ++ N+V MG
Sbjct: 113 GCTFCSTGLMGFSRNMTGGEIAAQVLVARDYLR------------AHGLGDEVKNLVYMG 160

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N+D V++SL I S++ GL FS+RRITLST      +   G E   + AISLHA 
Sbjct: 161 MGEPLTNWDEVRRSLQILSNAEGLEFSRRRITLSTCAIKGKMDVFGIEGLALPAISLHAP 220

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           + ++R  L+P   ++P+E LI A +    L    R+T EY+++KG+NDS + A  L+++L
Sbjct: 221 TQEIRESLMPGAARWPIEELIAALQGM-ELKARERVTIEYILIKGVNDSLQHARQLVRLL 279

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             +  KINLI +NP PG EY      D++ F E +++ G++  +R  +G DI AACGQLK
Sbjct: 280 SHLKCKINLIAYNPGPGIEYAAPAPGDVLAFEELLRKKGFTVTLRKSKGQDIAAACGQLK 339

Query: 367 SLSK-RIPKVPRQEMQITG 384
           + ++ R+     +E    G
Sbjct: 340 TEAQGRMNSTTSKEGPNDG 358


>gi|160915438|ref|ZP_02077649.1| hypothetical protein EUBDOL_01446 [Eubacterium dolichum DSM 3991]
 gi|158432558|gb|EDP10847.1| hypothetical protein EUBDOL_01446 [Eubacterium dolichum DSM 3991]
          Length = 347

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 133/368 (36%), Positives = 202/368 (54%), Gaps = 25/368 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +SL     +E+ E  L  G      + R  QI++W+Y + +     MSD+S E R +L++
Sbjct: 2   KSLYDFNYDEMGEMALAHGW----KKFRGHQIFQWLYRKRVASIDEMSDLSLETRRVLSE 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           ++ +   E+ D+++S DGT K+L       +     IE+V +      ++CV+SQVGC++
Sbjct: 58  NYELTDLELRDKQVSSDGTTKYLFALKDGSL-----IESVLMQFDYGKSICVTSQVGCNM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +G  K  R+LT+ E++ QVL  +                + +   ++S+IV+MG
Sbjct: 113 ACAFCASGLTKKKRDLTSGEMVSQVLYVQR--------------DLDAQKERLSHIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHA 245
            GEP  N+D+V   L   +   GL    R IT+ST G VP I     E     LAISLHA
Sbjct: 159 TGEPFDNYDHVMNFLRTVNHDRGLGIGARHITISTCGVVPRIYDFSKEHTQYNLAISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            SN+LRN L+PIN+ YPLE L+ A R+Y   +N  R+TFEY++LKG+ND  +    L K+
Sbjct: 219 PSNELRNQLMPINKAYPLEELMQAIRYYTSENNR-RLTFEYILLKGVNDGMKQVNELAKL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+ A +NLIP+N      +L    ++ + F + + + G    IR   G DI AACGQL
Sbjct: 278 LKGLNAYVNLIPYNAVDENGFLGVKYEEAMVFYDALMKRGIRCTIRKEHGADIDAACGQL 337

Query: 366 KSLSKRIP 373
           +    R  
Sbjct: 338 RVKHLRKE 345


>gi|220905656|ref|YP_002480967.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425]
 gi|219862267|gb|ACL42606.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425]
          Length = 367

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 126/364 (34%), Positives = 190/364 (52%), Gaps = 31/364 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+G  + EL E +  +G P      R  Q+ +W+Y +G+R    +S   +  R  + +
Sbjct: 27  PPLLGASQAELTEWITALGQPA----YRGQQLHQWLYQKGVRSLTEISVFPKAWRQQVAE 82

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +   ++     + DGT K+LLR     I     IETV IP   R T+CVSSQVGC +
Sbjct: 83  VA-VGRSQLHYRSQAQDGTVKYLLRLDDGQI-----IETVGIPSNRRLTVCVSSQVGCPM 136

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG     R+L   EI+ QVL  +                    G+++SN+V MG
Sbjct: 137 GCDFCATGKGGFRRHLDRHEIVDQVLTVQ-----------------ADFGQRVSNVVFMG 179

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
           MGEPL N + V +++   +  +G    +R +T+ST G    I R+    +   LA+SLHA
Sbjct: 180 MGEPLLNLEAVLEAVRCLNQDVG--IGQRFLTISTVGIPGQIRRLANHHLQATLAVSLHA 237

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +  LR  L+P  R YPLE L+  CR Y  L+   R++FEY++L G+ND P+ AL L + 
Sbjct: 238 SNQPLRAQLIPSARHYPLENLLQECRDYVQLTGR-RVSFEYILLGGLNDLPQHALELAQH 296

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G  + +NLIP+NP    +Y     + +  F + ++    ++ IR  RGLD  AACGQL
Sbjct: 297 LRGFQSHVNLIPYNPISEVDYQRPSPQRMQHFLQLLQEHHIAASIRRSRGLDQNAACGQL 356

Query: 366 KSLS 369
           ++  
Sbjct: 357 RANQ 360


>gi|224370186|ref|YP_002604350.1| putative SAM-dependent methyltransferase [Desulfobacterium
           autotrophicum HRM2]
 gi|223692903|gb|ACN16186.1| putative SAM-dependent methyltransferase [Desulfobacterium
           autotrophicum HRM2]
          Length = 345

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 137/364 (37%), Positives = 206/364 (56%), Gaps = 23/364 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + +    R+EL                R  Q++KW+Y+R  + F  M+DI +++R  L +
Sbjct: 2   KEITDFTRQELTAWFENN----NERSFRGGQVFKWLYLRQAQTFDEMTDIGKDLRQRLKE 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +F++        +IS DGT K L R           IE V IPEK   TLC+SSQ GC+ 
Sbjct: 58  NFTLSAMVFDRSEISRDGTEKLLFRLHDNAY-----IEAVLIPEKDHFTLCISSQAGCAQ 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC T      RNLT  EI+ Q+  A+++            +      R +SNIV MG
Sbjct: 113 GCKFCLTAKGGFTRNLTTGEIIGQIRTAKTV------------LAKRKAQRPLSNIVFMG 160

Query: 187 MGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           MGEPL N+D V ++LSI +D   GL  S RRITLST G VP I R+G +  V LA+SL+A
Sbjct: 161 MGEPLANYDTVVRALSIMTDSDYGLKLSSRRITLSTCGLVPEILRLGNDTEVNLAVSLNA 220

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++ R++L+PINR+YP+  L+ AC ++  +   ++ITFEY+++K +ND+  DA  LI +
Sbjct: 221 TTDETRSMLMPINRRYPMHELLKACTNFQ-MKPRKKITFEYILIKNVNDTMDDAKRLITL 279

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L  I AK+NLIPFN     ++    ++ I+ F + +     ++ +R  +G DI AACGQL
Sbjct: 280 LLPIRAKVNLIPFNEHDQSDFKRPSKESILAFLQMLLDHNLTAMVRKSKGDDISAACGQL 339

Query: 366 KSLS 369
           ++ +
Sbjct: 340 RAKA 343


>gi|86131691|ref|ZP_01050288.1| radical SAM superfamily protein [Dokdonia donghaensis MED134]
 gi|85817513|gb|EAQ38687.1| radical SAM superfamily protein [Dokdonia donghaensis MED134]
          Length = 346

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 131/366 (35%), Positives = 207/366 (56%), Gaps = 24/366 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+ +  + +E+L    +  G        R +Q+++W++ +G  DF  M++IS+E R LL
Sbjct: 4   EKKDIRKLTKEDLRAFFVDQGDKA----FRGNQVYEWLWQKGAHDFVDMTNISKETRILL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++HF I +  +   + S DGT K  ++         + +E+V IP KSR T CVSSQVGC
Sbjct: 60  DEHFVINHIRVDQMQRSSDGTIKNAVKLHD-----GLTVESVLIPTKSRTTACVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C FC T   K +RNL  +EI+ QV++             I+        R +SNIV 
Sbjct: 115 SLNCKFCATARLKRMRNLNPDEIVDQVVV-------------IDRQSKLYHDRPLSNIVF 161

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
           MGMGEPL N++NV K++   +D  GL  S +RIT+STSG    I ++  EE+   LA+SL
Sbjct: 162 MGMGEPLMNYNNVIKAIDKITDPEGLGMSPKRITVSTSGVPKIIKKMADEEVKFNLAVSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  +D+R  ++P N + PL  L +A  ++   +   RIT+EYV+  GIND   D   L+
Sbjct: 222 HSALDDVRTEIMPFNEQMPLADLKEALIYWYEKTGK-RITYEYVVWDGINDRQIDIDALL 280

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
              K +P+K+N+I +NP    ++  ++ + I  + + ++ +G +  +R  RG DI AACG
Sbjct: 281 DFCKAVPSKVNIIEYNPIDDGQFQQANPQAIDRYVDVLEANGVTVTVRRSRGKDIDAACG 340

Query: 364 QLKSLS 369
           QL +  
Sbjct: 341 QLANKQ 346


>gi|256819328|ref|YP_003140607.1| radical SAM enzyme, Cfr family [Capnocytophaga ochracea DSM 7271]
 gi|256580911|gb|ACU92046.1| radical SAM enzyme, Cfr family [Capnocytophaga ochracea DSM 7271]
          Length = 350

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 205/373 (54%), Gaps = 24/373 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K  +  + +EEL       G        R +Q+++W++ +G+  F+ M+ + +  R 
Sbjct: 1   MQQKRDIRALTKEELRAFFESNG----DKPFRGNQVYEWLWQKGVHTFEEMTSLPKATRE 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +L++HFSI + ++   + S DGT K  +R     +     +E+V IP  +R T CVSSQV
Sbjct: 57  MLSEHFSINHIKVDVMQRSNDGTIKNAVRLHDGLL-----VESVLIPTDTRTTACVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GCSL CSFC T   K +RNL  +EI  QV             + I+       GR +SNI
Sbjct: 112 GCSLNCSFCATARLKRMRNLLPDEIFDQV-------------KVIDEQSRAFFGRPLSNI 158

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N++NV K++   +   GL  S +RITLSTSG    I ++ + E+   LA+
Sbjct: 159 VFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTSGIPKLIKKMADDEVKFKLAV 218

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+  + +R  ++P N ++PLE L +A  ++   +   RIT+EYV+ KGIND  +D   
Sbjct: 219 SLHSAISSVRTGIMPFNEQFPLEELREALAYWYQKT-KNRITYEYVVWKGINDQKKDVEA 277

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           LIK  K  P+K+NLI +NP     +  +D K +  +   ++ +G +  +R  RG DI AA
Sbjct: 278 LIKFCKFAPSKVNLIEYNPIDDGAFQQADPKALELYQTMLEEAGITVTVRHSRGKDIDAA 337

Query: 362 CGQLKSLSKRIPK 374
           CGQL +      K
Sbjct: 338 CGQLANKKVNSEK 350


>gi|258515524|ref|YP_003191746.1| radical SAM enzyme, Cfr family [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779229|gb|ACV63123.1| radical SAM enzyme, Cfr family [Desulfotomaculum acetoxidans DSM
           771]
          Length = 349

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 202/373 (54%), Gaps = 29/373 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++   L+ +   ++E  +L+  +P    + R  QI +W++ +G+  F  M+++  ++R  
Sbjct: 1   MESTGLMDLTLPQIENWVLQEAMP----KFRARQIAEWMFQKGVDSFDQMTNLPLDLRKK 56

Query: 64  LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LNQ   +   +++ +++S   GT K+L +           +ETV + +    ++CVSSQV
Sbjct: 57  LNQTAYLEDLQVIKKQVSAQTGTVKYLFKLKD-----GQAVETVLMRQVYGLSVCVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC ++C  C +    LVRNL+A EI  QV+  +                      +IS++
Sbjct: 112 GCRMSCRLCASTLSGLVRNLSAGEIYAQVMSVQK-----------------EQSSRISHV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL NF +    ++  +   GL+   R ITLST G VP I  + E+ + + LA+
Sbjct: 155 VIMGSGEPLDNFQHTLAFMTNINADYGLNIGYRHITLSTCGLVPEILALAEKKLPLTLAV 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +N LR+ +VP+NRKYPL++L+ AC+ Y  L+   R++FEY ++KG+ND+   A  
Sbjct: 215 SLHAPNNKLRDSIVPVNRKYPLQVLLKACKDYTKLTGR-RVSFEYALIKGLNDTTVCAQE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LK     INLIP NP P      +  ++I  F + +++ G    +R   G DI AA
Sbjct: 274 LADLLKNFSCHINLIPVNPVPERGLQRTPVQNIQRFKDILEKEGLKVTVRREMGSDIDAA 333

Query: 362 CGQLKSLSKRIPK 374
           CGQL+       K
Sbjct: 334 CGQLRHSFVDRRK 346


>gi|284051696|ref|ZP_06381906.1| radical SAM protein [Arthrospira platensis str. Paraca]
 gi|291570690|dbj|BAI92962.1| ribosomal RNA large subunit methyltransferase N [Arthrospira
           platensis NIES-39]
          Length = 344

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 127/365 (34%), Positives = 188/365 (51%), Gaps = 31/365 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L+G    EL + + + G P      R  Q+++WIY +G +  + ++   ++ R  L  
Sbjct: 9   KPLLGTSLPELTDWVQQQGQPA----YRGKQLYQWIYQKGAKSLEEITVFPKQWRSQLA- 63

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +    I    ++ DGT K+LL+     I     IETV IP   R T+CVSSQVGC +
Sbjct: 64  TIPVGRSTIHYRAVASDGTIKYLLKLSDGQI-----IETVGIPTHDRLTVCVSSQVGCPM 118

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG     RNL   EI+ QVL  +                     R++S+IV MG
Sbjct: 119 ACDFCATGKGGFFRNLETHEIVDQVLTVQE-----------------DFQRRVSHIVFMG 161

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
           MGEPL N  N   +++  +    +   +R ITLST G    I ++ E ++ + LA+SLHA
Sbjct: 162 MGEPLLNTQNAIAAITCLNRD--IGIGQRMITLSTVGIPNRIRQLAEYQLQITLAVSLHA 219

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +  LR  L+P  + YPLE LI  CR Y  L+   R++FEYVML G+ND P  A  L  +
Sbjct: 220 SNQTLREQLIPSAKTYPLEALISECRDYVKLTGR-RVSFEYVMLAGVNDLPTHAAELASL 278

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++G  + +NLIP+NP    +Y       I  F + ++    +  +R  RGLD  AACGQL
Sbjct: 279 MRGFQSHVNLIPYNPINEVDYQRPSPSQIQGFVKELEERRVAVSVRYSRGLDADAACGQL 338

Query: 366 KSLSK 370
           ++  +
Sbjct: 339 RASQE 343


>gi|315224773|ref|ZP_07866595.1| cfr family radical SAM enzyme [Capnocytophaga ochracea F0287]
 gi|314945266|gb|EFS97293.1| cfr family radical SAM enzyme [Capnocytophaga ochracea F0287]
          Length = 350

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 133/373 (35%), Positives = 205/373 (54%), Gaps = 24/373 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             +K  +  + ++EL       G        R +Q+++W++ +G+  F+ M+ + +  R 
Sbjct: 1   MQQKRDIRALTKDELRAFFESNG----DKPFRGNQVYEWLWQKGVHTFEEMTSLPKATRE 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +L++HFSI + ++   + S DGT K  +R     +     +E+V IP  +R T CVSSQV
Sbjct: 57  MLSEHFSINHIKVDVMQRSNDGTIKNAVRLHDGLL-----VESVLIPTDTRTTACVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GCSL CSFC T   K +RNL  +EI  QV             + I+       GR +SNI
Sbjct: 112 GCSLNCSFCATARLKRMRNLLPDEIFDQV-------------KVIDEQSRAFFGRPLSNI 158

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N++NV K++   +   GL  S +RITLSTSG    I ++ + E+   LA+
Sbjct: 159 VFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTSGIPKLIKKMADDEVKFKLAV 218

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+  + +R  ++P N ++PLE L +A  ++   +   RIT+EYV+ KGIND  +D   
Sbjct: 219 SLHSAISSVRTGIMPFNEQFPLEELREALAYWYQKT-KNRITYEYVVWKGINDQKKDVEA 277

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           LIK  K  P+K+NLI +NP     +  +D K +  +   ++ +G +  +R  RG DI AA
Sbjct: 278 LIKFCKFAPSKVNLIEYNPIDDGAFQQADPKALELYQTMLEEAGITVTVRHSRGKDIDAA 337

Query: 362 CGQLKSLSKRIPK 374
           CGQL +      K
Sbjct: 338 CGQLANKKVNSEK 350


>gi|28210911|ref|NP_781855.1| ribosomal RNA large subunit methyltransferase N [Clostridium tetani
           E88]
 gi|75542526|sp|Q895P8|RLMN_CLOTE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|28203350|gb|AAO35792.1| florfenicol resistance protein [Clostridium tetani E88]
          Length = 349

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 203/367 (55%), Gaps = 30/367 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +  E+L++ +++     +    R  Q+  W+Y +G+ +F+ M +I + + + L +
Sbjct: 5   INLLDLSLEDLKKWMIEN----KEKEFRAKQVLDWVY-KGVYNFEAMKNIPKVITNKLQE 59

Query: 67  HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F +  P +V + +S D  T K+L ++    I     IE+V +  K   T+CVS+QVGC 
Sbjct: 60  NFYLSVPSVVQKYVSKDESTVKFLFKYNDGNI-----IESVVMKYKHGNTICVSTQVGCK 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    +VR+L+  EIL QVL A+   G+                 +ISNIVMM
Sbjct: 115 MGCTFCASTIGGIVRSLSHGEILGQVLKAQEETGE-----------------RISNIVMM 157

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N+DN    + + +   GL+  +R ITLST G VP I ++ EE + + LAISLH
Sbjct: 158 GSGEPLDNYDNSLNFIRMVNAENGLNIGQRHITLSTCGIVPKIRQLAEENLQITLAISLH 217

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++++R   +PI   Y +E LI+AC +Y   +N  RITFEY ++  +ND    A  L  
Sbjct: 218 APNDNIRRKTMPIASVYSVEELIEACNYYINKTNR-RITFEYALVSNLNDKEVHAEELAT 276

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+   +NLIP N     ++  S    I  FS  + +SG  + IR   G DI AACGQ
Sbjct: 277 LLKGMLCHVNLIPVNKIDEKDFKSSSTNRIKNFSNILLKSGIQTTIRREMGSDINAACGQ 336

Query: 365 LKSLSKR 371
           L+    +
Sbjct: 337 LRRRYVK 343


>gi|154175427|ref|YP_001407355.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
           curvus 525.92]
 gi|205829690|sp|A7GVW3|RLMN_CAMC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|112802451|gb|EAT99795.1| radical SAM enzyme, Cfr family [Campylobacter curvus 525.92]
          Length = 371

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 143/380 (37%), Positives = 211/380 (55%), Gaps = 42/380 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+     ELE  L          + R  QI++WIY +   +F  M ++ +++R  L Q
Sbjct: 2   KNLLDYTLSELEAIL--------SPKFRAKQIYEWIYKKNAENFDEMLNLPKDMRTNLAQ 53

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
            F       V  + S DG+ K+L       +     IE+V +P K              R
Sbjct: 54  EFYFDPLYCVKFEESSDGSIKYLF-----ALKDGNTIESVLLPMKEVEVDEGGNISRHAR 108

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC + C FC T    L RNL+  EI+ Q+L  +                  
Sbjct: 109 YTICVSSQVGCKMGCLFCLTAKGGLKRNLSPGEIVGQILWIKKTN--------------H 154

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  N+V MGMGEPL N  NV K++ I  +  GL+ S RR T+STSG    I ++GE
Sbjct: 155 IPYERRVNVVYMGMGEPLDNLANVAKAIQILKEPDGLAISPRRQTVSTSGLGAQIKKLGE 214

Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
            ++GV+LAISLHAV+N+LR+ L+P+N+ Y +E ++DA R +P +   +R+ FEY++++G+
Sbjct: 215 MDLGVLLAISLHAVTNELRSKLMPVNKAYNIEAVMDAVRGFP-IDMRKRVMFEYLVIRGM 273

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           NDS +DA  L+K+L GI AK+NLI FNP  G EY   +  D++ F E ++  G +  IR 
Sbjct: 274 NDSVKDAKTLVKLLHGIKAKVNLIYFNPHEGSEYGRPELADMLEFQEYLRAHGVTCTIRQ 333

Query: 353 PRGLDILAACGQLKSLSKRI 372
            +GLDI AACGQLK  S+ +
Sbjct: 334 SKGLDISAACGQLKQRSQNL 353


>gi|15895003|ref|NP_348352.1| Fe-S-cluster redox protein [Clostridium acetobutylicum ATCC 824]
 gi|81620134|sp|Q97IC4|RLMN_CLOAB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|15024693|gb|AAK79692.1|AE007682_2 Predicted Fe-S-cluster redox enzyme, YLON B.subtilis ortholog
           [Clostridium acetobutylicum ATCC 824]
 gi|325509140|gb|ADZ20776.1| Fe-S-cluster redox enzyme [Clostridium acetobutylicum EA 2018]
          Length = 345

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 130/362 (35%), Positives = 189/362 (52%), Gaps = 30/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+++     EL++ + K G        R  Q + WIY  G  DF+ M ++ Q  R  L +
Sbjct: 2   ENILDYNEAELKQWMDKNG----EKTFRAKQFFDWIY-NGTFDFKDMKNLPQSTRERLEK 56

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  P +V    S  G T K+L R+    I     IE V +      ++C+S+QVGC 
Sbjct: 57  NFYIGMPSVVKRLNSKKGDTVKFLFRYNDGNI-----IECVVMKYDYGNSICISTQVGCR 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +     VR+LT+ EIL Q+L A+  +G+                 +ISNIV+M
Sbjct: 112 MGCSFCASTIGGRVRDLTSGEILAQILKAQKEIGE-----------------RISNIVLM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLH 244
           G GEPL N+DNV K + I +   GL+  +R ITLST G VP I  +  E + + LAISLH
Sbjct: 155 GSGEPLDNYDNVIKFIRIVNSEKGLNIGQRHITLSTCGIVPRIYDLMKENLQITLAISLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  ++ R  ++PI  +Y +  +ID C+ Y   +   RITFEY ++K +ND    A  L +
Sbjct: 215 ASDDETRKKIMPIANRYSISEIIDCCKKYSDFTGR-RITFEYSLVKDVNDDKESAKKLGE 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L G+   +NLIP N      Y   +   I  F + + +    S IR   G DI AACGQ
Sbjct: 274 LLSGMLCHVNLIPVNTVNETSYEKPESSKIKKFCDTLLKYKIESTIRKEMGADINAACGQ 333

Query: 365 LK 366
           L+
Sbjct: 334 LR 335


>gi|126700199|ref|YP_001089096.1| radical SAM protein [Clostridium difficile 630]
 gi|255101744|ref|ZP_05330721.1| radical SAM protein [Clostridium difficile QCD-63q42]
 gi|255307613|ref|ZP_05351784.1| radical SAM protein [Clostridium difficile ATCC 43255]
 gi|123066578|sp|Q182S0|RLMN_CLOD6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|115251636|emb|CAJ69469.1| putative radical SAM-family protein [Clostridium difficile]
          Length = 343

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 133/368 (36%), Positives = 204/368 (55%), Gaps = 30/368 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK  L     +EL+E +  I         R SQI+ WIY +G + F  M++I + +R+ L
Sbjct: 4   KKIVLKNFTEDELKEFMKTI----DEKPFRGSQIFSWIY-KGAKTFDDMNNIPKSLRNKL 58

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +   I + +I  +  S  D T+K+L       I     IETV +   SR T+CVS+QVG
Sbjct: 59  EEVSCIGHIDIELKLESKVDNTKKYLFLLDDGNI-----IETVMMDYDSRVTVCVSNQVG 113

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L+RNL   EIL QV+  +                    G+++SN+V
Sbjct: 114 CRMGCNFCASTMDGLIRNLEPWEILDQVIKIQE-----------------DTGKRVSNLV 156

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG GEPL NF+N K+ L I ++  GL+   R ITLST G VP +  + + EI + LA+S
Sbjct: 157 LMGSGEPLDNFENTKQFLKIINEKNGLNIGYRHITLSTCGIVPKMYELADLEIAINLALS 216

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+  ++ R  ++P+   Y +E +++ACR+Y   +N  R+TFEY ++KG+NDS ++A  L
Sbjct: 217 LHSPYDEERRKIMPVANAYSIEEILNACRYYIKKTNR-RVTFEYSLIKGVNDSEKEAKAL 275

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+LKG+   +NLIP N     EY   D+  I  F + ++++   + +R   G DI  AC
Sbjct: 276 AKLLKGMLCHVNLIPINKVEEREYEKPDKAFIYKFRDSLEKNNIPATVRMSMGSDISGAC 335

Query: 363 GQLKSLSK 370
           GQL+   K
Sbjct: 336 GQLRRKYK 343


>gi|302872121|ref|YP_003840757.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574980|gb|ADL42771.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 344

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 123/367 (33%), Positives = 191/367 (52%), Gaps = 32/367 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KK  +  +  +EL++ L  IG        R SQI++W+Y +   D    +++  E+R  
Sbjct: 1   MKKL-IKDLTFDELKKWLENIG----EKPFRASQIFEWLYKKNATDVMQFTNLPLELREK 55

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +   F I   +I+  +   DG + K+L        G    IE+V++P +    +CVS+QV
Sbjct: 56  IGDEFLINSLQILQHQ--SDGESIKFLFEL-----GDKNGIESVFLPYRYGNAICVSTQV 108

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +     VRNL+A E++ Q++   +  G                 ++I+N+
Sbjct: 109 GCRMNCRFCASAIGGFVRNLSAGEMVDQIINVENFTG-----------------KRITNV 151

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
           V+MG GEP  N +NV K + I +   G +   R IT+ST G    I R+ +    V LAI
Sbjct: 152 VLMGSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIAEGIYRLCDFPKQVNLAI 211

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +N LR+ LVP+N+KYP+E ++ A  +Y   +N  R+TFEY ++ G+NDS   A  
Sbjct: 212 SLHAPNNRLRDKLVPMNKKYPVEDIMKAVDYYIQKTNR-RVTFEYALIDGVNDSIECAEE 270

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP     +    ++ I  F E ++       IR   G  I AA
Sbjct: 271 LGQMLKGKLVHVNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAA 330

Query: 362 CGQLKSL 368
           CGQL+  
Sbjct: 331 CGQLRRR 337


>gi|209526448|ref|ZP_03274975.1| radical SAM enzyme, Cfr family [Arthrospira maxima CS-328]
 gi|209493083|gb|EDZ93411.1| radical SAM enzyme, Cfr family [Arthrospira maxima CS-328]
          Length = 346

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 127/362 (35%), Positives = 188/362 (51%), Gaps = 31/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L+G    EL + + + G P      R  Q+++WIY +G +  + ++   ++ R  L  
Sbjct: 9   KPLLGTSLPELTDWVQQQGQPA----YRGKQLYQWIYQKGAKSLEEITVFPKQWRSQLA- 63

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +    I    ++ DGT K+LL+     I     IETV IP   R T+CVSSQVGC +
Sbjct: 64  TIPVGRSTIHYRAVASDGTIKYLLKLSDGQI-----IETVGIPTHDRLTVCVSSQVGCPM 118

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG     RNL   EI+ QVL  +                     R++S+IV MG
Sbjct: 119 ACDFCATGKGGFFRNLETHEIVDQVLTVQE-----------------DFQRRVSHIVFMG 161

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
           MGEPL N  N   +++  +    +   +R ITLST G    I ++ E ++ + LA+SLHA
Sbjct: 162 MGEPLLNTQNAIAAITCLNRD--IGIGQRMITLSTVGIPNRIRQLAEYQLQITLAVSLHA 219

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +  LR  L+P  + YPLE LI  CR Y  L+   R++FEYVML G+ND P  A  L  +
Sbjct: 220 SNQTLREQLIPSAKTYPLESLISECRDYVKLTGR-RVSFEYVMLSGVNDLPSHATELASL 278

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++G  + +NLIP+NP    +Y       I  F + +++   +  +R  RGLD  AACGQL
Sbjct: 279 MRGFQSHVNLIPYNPINEVDYQRPSPSQIQDFFKELEQRRVAVSVRYSRGLDADAACGQL 338

Query: 366 KS 367
           ++
Sbjct: 339 RA 340


>gi|55981906|ref|YP_145203.1| ribosomal RNA large subunit methyltransferase N [Thermus
           thermophilus HB8]
 gi|81363686|sp|Q5SGZ3|RLMN_THET8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|55773319|dbj|BAD71760.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 355

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 138/366 (37%), Positives = 200/366 (54%), Gaps = 32/366 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + ++ ++ EEL                R +QI  W+Y +G RDF  M+D+ + +R  L +
Sbjct: 8   KPILELLPEEL-----------PGEGYRRAQIAHWLYAKGARDFSEMTDLPKALREALAR 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            + +    +V    S DG+ K+L            + E VY+P ++R T+C+S+ VGC  
Sbjct: 57  EWRLSEFSLVQAFPSQDGSVKYLFTLLD-----GKKTEAVYMPYENRKTVCLSTMVGCPA 111

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG     RNLTA EIL Q+L      G  P              R+I N+V+MG
Sbjct: 112 GCTFCATGALGFGRNLTAAEILDQLLTIAYHQGLSP--------------REIRNVVLMG 157

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEPL N  NV K++ I      L+ S RR+TLST G    I R+ EE +GV LA+SLHA
Sbjct: 158 MGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHA 217

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R  ++P   +YP+  +++A RHY   +   R+TFEY +LKG+ND    A  L K+
Sbjct: 218 PDDETRRKIIPTAHRYPIAEIMEAVRHYHAKTKR-RVTFEYTLLKGVNDHLWQARLLAKL 276

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+ A +NLIPFNPW G   + + +  ++ F+E +KR G  + IR  RG D+ AACGQL
Sbjct: 277 LKGLSAHVNLIPFNPWEGAPVVGTPRAGVLAFAEELKRLGVPTSIRWSRGQDVGAACGQL 336

Query: 366 KSLSKR 371
                R
Sbjct: 337 ALKVPR 342


>gi|46199876|ref|YP_005543.1| florfenicol resistance protein [Thermus thermophilus HB27]
 gi|81567593|sp|Q72HC1|RLMN_THET2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|46197503|gb|AAS81916.1| florfenicol resistance protein [Thermus thermophilus HB27]
          Length = 355

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 138/366 (37%), Positives = 199/366 (54%), Gaps = 32/366 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + ++ ++ EEL                R +QI  W+Y +G RDF  M+D+ + +R  L +
Sbjct: 8   KPILELLPEEL-----------PGEGYRRAQIAHWLYAKGARDFSEMTDLPKALREALAR 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            + +    +V    S DG+ K+L            + E VY+P ++R T+C+S+ VGC  
Sbjct: 57  EWRLSEFSLVQAFPSQDGSVKYLFTLLD-----GKKTEAVYMPYENRKTVCLSTMVGCPA 111

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG     RNLTA EIL Q+L      G  P              R+I N+V+MG
Sbjct: 112 GCTFCATGALGFGRNLTAAEILDQLLTIAYHQGLSP--------------REIRNVVLMG 157

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEPL N  NV K++ I      L+ S RR+TLST G    I R+ EE +GV LA+SLHA
Sbjct: 158 MGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHA 217

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R  ++P   +YP+  +++A RHY   +   R+TFEY +LKG+ND    A  L K+
Sbjct: 218 PDDETRRKIIPTAHRYPIAEIMEAVRHYHAKTKR-RVTFEYTLLKGVNDHLWQARLLAKL 276

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+ A +NLIPFNPW G     + +  ++ F+E +KR G  + IR  RG D+ AACGQL
Sbjct: 277 LKGLSAHVNLIPFNPWEGAPVAGTPKAGVLAFAEELKRLGVPTSIRWSRGQDVGAACGQL 336

Query: 366 KSLSKR 371
                R
Sbjct: 337 ALKVPR 342


>gi|118475734|ref|YP_892923.1| radical SAM protein [Campylobacter fetus subsp. fetus 82-40]
 gi|261886280|ref|ZP_06010319.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
           fetus subsp. venerealis str. Azul-94]
 gi|205829691|sp|A0RRU0|RLMN_CAMFF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118414960|gb|ABK83380.1| radical SAM enzyme, Cfr family [Campylobacter fetus subsp. fetus
           82-40]
          Length = 354

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 142/378 (37%), Positives = 209/378 (55%), Gaps = 42/378 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ + ++EL   L          + R  QI++W+Y +  R F  M++IS++VR  L  
Sbjct: 2   RNLLDLSQDELANLL--------SPKFRAKQIYEWVYKKNARSFDEMTNISKDVRENLKS 53

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
            F +     V  + S DG+ K+L +           IE+V +P K              R
Sbjct: 54  EFYLDPLTCVRSETSKDGSIKYLFKLTD-----GKTIESVLLPMKEEISSEDGSVERHAR 108

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC + CSFC T     VRNL+A EI+ Q+L  +                  
Sbjct: 109 YTICVSSQVGCKMGCSFCLTAKGGFVRNLSAGEIVAQILWIKRENNI------------- 155

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  N+V MGMGEPL N  NV K++SI  D+ GL+   RR T+STSG    I ++GE
Sbjct: 156 -PYERRVNVVYMGMGEPLDNLTNVSKAVSILKDNDGLAIGARRQTISTSGLASQIKKLGE 214

Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
            ++GV+LAISLHAV+++LR  L+PIN+ Y +  ++DA R +P +   +R+ FEY+++  +
Sbjct: 215 LDLGVLLAISLHAVTDELRAKLMPINKAYNIAAVMDAVRAFP-IDMRKRVMFEYLIMDKV 273

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND+  DA  L+K+L GI AK+NLI FNP  G +Y     +++  F   ++  G +  IR 
Sbjct: 274 NDNLSDAKALVKLLHGIKAKVNLILFNPHEGSQYQRPSIENVDNFRTYLQSRGVTCTIRQ 333

Query: 353 PRGLDILAACGQLKSLSK 370
            +GLDI AACGQLK  SK
Sbjct: 334 SKGLDISAACGQLKERSK 351


>gi|313681247|ref|YP_004058985.1| 23S rRNA m(2)a-2503 methyltransferase [Sulfuricurvum kujiense DSM
           16994]
 gi|313154107|gb|ADR32785.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfuricurvum kujiense DSM
           16994]
          Length = 354

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 142/380 (37%), Positives = 206/380 (54%), Gaps = 42/380 (11%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  ++   + EL   +            R  QIW WIY +    F+ M ++ + +R  
Sbjct: 1   MGKLCILDYTKAELAGMVK--------PSFRAKQIWGWIYHQYATSFETMQNLPKTMREE 52

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----------- 112
           L Q + I+  +I  ++ S DGT K+L             +ETV++  K            
Sbjct: 53  LAQTYEIMPLKIARKECSTDGTIKYLFELSD-----GKTVETVWLKMKDESIDEEGNIEH 107

Query: 113 --RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
             R T+CVS+QVGC + CSFC T      R+LTA EI+ QVL  +              M
Sbjct: 108 EARYTVCVSTQVGCKVGCSFCLTAKGGFTRDLTAGEIVAQVLAVK--------------M 153

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  +  NIV MGMGEPL N DN+ K+++I  D  GLS S +R T+STSG    I +
Sbjct: 154 DNNLAAHRRLNIVYMGMGEPLDNLDNLAKAITILKDEEGLSISGKRQTVSTSGLSTKIDK 213

Query: 231 VGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +GE ++GV +AISLHAV ++LR  L+P+N+ Y +  +IDA + +P +   +R+ FEY+++
Sbjct: 214 LGEMDLGVHIAISLHAVDDELRTELIPMNKAYNIASIIDAVKRFP-IDTRKRVMFEYLVI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K  ND    A  L+K+L GI AK+NLI FNP+PG +Y    ++D+V F E + + G    
Sbjct: 273 KNKNDDLGSAKKLVKLLHGIKAKVNLIYFNPYPGSDYQRPSREDMVAFQEYLIKHGVLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  +GLDI AACGQLK  S
Sbjct: 333 IRDSKGLDISAACGQLKEKS 352


>gi|81300567|ref|YP_400775.1| ribosomal RNA large subunit methyltransferase N [Synechococcus
           elongatus PCC 7942]
 gi|123769224|sp|Q31MD1|RLMN_SYNE7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|81169448|gb|ABB57788.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 361

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 191/368 (51%), Gaps = 37/368 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+G    EL++ ++  G P      R  Q+++W+Y R I +   +S   +  R  L Q
Sbjct: 15  TPLLGRSLPELQDWVVAQGQPS----YRAKQLYQWLYERSIHNLAEISVFPKAWRQSL-Q 69

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +   +IVD  +S  GT K+LLR     I     IE V IP   R T+CVSSQ+GC++
Sbjct: 70  AVPVGRSQIVDRSVSPSGTIKYLLRLHDGEI-----IEAVGIPSGDRLTVCVSSQLGCAM 124

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG     R+L   EI+ QVL  +                     +++SNIV MG
Sbjct: 125 ACDFCATGKGGFRRHLAPHEIIDQVLTVQE-----------------DWQQRVSNIVFMG 167

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVML 239
           MGEPL N D V  ++   +    +   +R IT+ST G   +I R+ E        +   L
Sbjct: 168 MGEPLLNLDAVLAAIRCLNQD--IGIGQRGITVSTVGIPGHIRRLAETKRVGDRPLQFTL 225

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +  +R+ L+P +R YP+  L+  CR Y  ++   R+TFEY++L G+ND P  A
Sbjct: 226 AVSLHAPNQAIRDRLIPSSRHYPITDLLQECRDYVQITGR-RVTFEYILLAGLNDQPEQA 284

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++L+G  + +NLIP+NP    EY    +  +  F++ +++   +  +R  +GL   
Sbjct: 285 EQLAQLLRGFQSHVNLIPYNPIDEVEYQRPSKARVDAFADALRQQRVAVTVRWSKGLGAD 344

Query: 360 AACGQLKS 367
           AACGQL++
Sbjct: 345 AACGQLRA 352


>gi|172037640|ref|YP_001804141.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp.
           ATCC 51142]
 gi|205829743|sp|B1WU13|RLMN_CYAA5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|171699094|gb|ACB52075.1| CHP48-containing protein [Cyanothece sp. ATCC 51142]
          Length = 343

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 191/366 (52%), Gaps = 31/366 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++E+L+G    +L + + + G P      R  Q+ +W+Y +G+R    +S   +  R  L
Sbjct: 4   QEETLLGKSVGQLTDWVKQQGQPA----YRGKQLHQWLYQKGVRSLTEISVFPKAWREEL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              + I    IV   I+ D TRK+LL       G  + IETV IP   R T+CVSSQVGC
Sbjct: 60  KD-YPIGRSNIVHCTIAPDQTRKYLLSL-----GDGLIIETVGIPTSKRLTVCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG     RNLT  EI+ QVL  +                     R++S++V 
Sbjct: 114 PMNCDFCATGKGGYTRNLTCAEIVDQVLTVQE-----------------DFQRRVSHVVF 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MGMGEPL N   V K++ I +  +G    +R +T+ST G    I  +   ++ V  A+SL
Sbjct: 157 MGMGEPLLNLKEVIKAVKILNQDVG--IGQRSLTISTVGVPKKILELAHHQLQVTFAVSL 214

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +  LR  L+P  + YPL  L+  CR Y  ++   R+TFEY++L G+ND P   + L 
Sbjct: 215 HAANQTLREQLIPSAKSYPLPKLLADCRKYVEITGR-RVTFEYILLGGVNDLPEQGIQLA 273

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K L G  + +NLIP+NP    +Y   D + I  F   ++    +  +R  RGL+  AACG
Sbjct: 274 KCLTGFQSHVNLIPYNPIEEADYQRPDGESINRFKSILEEHKIAVSVRYSRGLEANAACG 333

Query: 364 QLKSLS 369
           QL+++S
Sbjct: 334 QLRAMS 339


>gi|332204776|gb|EGJ18841.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47901]
          Length = 361

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 122/364 (33%), Positives = 203/364 (55%), Gaps = 26/364 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQGIVQESADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 +IS+IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV       +D  G++   R IT+S SG    I    +E + V LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKSSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAA 339

Query: 362 CGQL 365
           CGQL
Sbjct: 340 CGQL 343


>gi|255656559|ref|ZP_05401968.1| radical SAM protein [Clostridium difficile QCD-23m63]
 gi|296449989|ref|ZP_06891753.1| cfr family radical SAM enzyme [Clostridium difficile NAP08]
 gi|296878370|ref|ZP_06902378.1| cfr family radical SAM enzyme [Clostridium difficile NAP07]
 gi|296261259|gb|EFH08090.1| cfr family radical SAM enzyme [Clostridium difficile NAP08]
 gi|296430668|gb|EFH16507.1| cfr family radical SAM enzyme [Clostridium difficile NAP07]
          Length = 343

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 133/368 (36%), Positives = 205/368 (55%), Gaps = 30/368 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK  L     +EL+E +  I         R SQI+ WIY +G + F+ M++I + +R+ L
Sbjct: 4   KKIVLKNFTEDELKEFMKTI----DEKPFRGSQIFSWIY-KGAKTFEDMNNIPKSLRNKL 58

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +   I + +I  +  S  D T+K+L       I     IETV +   SR T+CVS+QVG
Sbjct: 59  EEISCIGHIDIELKLESKVDNTKKYLFLLDDGNI-----IETVMMDYDSRVTVCVSNQVG 113

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L+RNL   EIL QV+  +                    G+++SN+V
Sbjct: 114 CRMGCNFCASTMDGLIRNLEPWEILDQVIKIQE-----------------DTGKRVSNLV 156

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG GEPL NF+N K+ L I ++  GL+   R ITLST G VP +  + + EI + LA+S
Sbjct: 157 LMGSGEPLDNFENTKQFLKIINEKNGLNIGYRHITLSTCGIVPKMYELADLEIAINLALS 216

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+  ++ R  ++P+   Y ++ ++DACR+Y   +N  R+TFEY ++KG+NDS ++A  L
Sbjct: 217 LHSPYDEERRKIMPVANAYSIKEILDACRYYIKKTNR-RVTFEYSLIKGVNDSEKEAKAL 275

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+LKG+   +NLIP N     EY   D+  I  F + ++++   + +R   G DI  AC
Sbjct: 276 AKLLKGMLCHVNLIPINKVEEREYEKPDKAFIYKFRDSLEKNNIPATVRMSMGSDISGAC 335

Query: 363 GQLKSLSK 370
           GQL+   K
Sbjct: 336 GQLRRKYK 343


>gi|170077338|ref|YP_001733976.1| radical SAM protein [Synechococcus sp. PCC 7002]
 gi|205829912|sp|B1XQH8|RLMN_SYNP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|169885007|gb|ACA98720.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7002]
          Length = 346

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 124/369 (33%), Positives = 197/369 (53%), Gaps = 31/369 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + ++ L+G    EL + +   G P      R  Q++ W+Y +GI D   ++   +  R  
Sbjct: 1   MPQDVLLGKSLPELTDWIETTGQPA----YRGKQLYNWLYQKGIHDLSEITVFPKAWREQ 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           +   + +   +I  ++ + DGTRK+LL+     I     IETV IP + R T+CVSSQVG
Sbjct: 57  MG-TYPVGRSQIHHQRTAPDGTRKYLLQLHDGLI-----IETVGIPTEKRLTVCVSSQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TG     R+L A EI+ QVL  +                     +++S++V
Sbjct: 111 CAMACDFCATGKSGFTRHLQAHEIIDQVLTVQ-----------------TDFQQRVSHVV 153

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
            MGMGEPL N + V KS+   +    +   +R +T+ST G    I  + ++ + + LA+S
Sbjct: 154 FMGMGEPLANLEQVLKSIQSLNQD--IGIGQRSLTVSTVGVPDQIRALAQQNLQITLAVS 211

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +  LR  ++P    YP+E L+D CR Y  ++  RR++FEY++L G+ND P  A  L
Sbjct: 212 LHAPNQALRESIIPTAVHYPIEALLDECREYVAIT-RRRLSFEYILLAGVNDLPDHAAEL 270

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K LKG  + +NLIP+NP     +    +K I  F + ++    +  +R  +GL+  AAC
Sbjct: 271 AKKLKGFQSHVNLIPYNPITEVPFQRPGKKRINVFKQILQDHKIAVSVRYSKGLEADAAC 330

Query: 363 GQLKSLSKR 371
           GQL+S  +R
Sbjct: 331 GQLRSNLRR 339


>gi|325297954|ref|YP_004257871.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
           salanitronis DSM 18170]
 gi|324317507|gb|ADY35398.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
           salanitronis DSM 18170]
          Length = 348

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 194/371 (52%), Gaps = 29/371 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G   +EL +A+ ++G+P         QI +W+Y + +     M+++S   R LL 
Sbjct: 2   KTALLGKTLDELNDAVKELGMPA----FSARQIAQWLYGKKVSSIDEMTNLSLRNRELLK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +H+ +     V    S DGT K+L R P         +E+VYIP+  R TLCVSSQVGC 
Sbjct: 58  EHYEVGAALPVHAMRSADGTVKYLFRTP-----EGNFVESVYIPDGERATLCVSSQVGCK 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LT  +IL Q+                           ++N+V M
Sbjct: 113 MNCKFCMTGKQGYAGSLTVTQILNQIYSIPERD-------------------SLTNVVFM 153

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP  N D V ++L I +   G ++S +RIT+ST G    + R   E    LA+SLH+
Sbjct: 154 GMGEPFDNLDAVLRALEILTSDYGYAWSPKRITVSTVGLRRGLERFLAESDCHLAVSLHS 213

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  R +P+  +++  R+Y   S  RR++FEY++  G+NDS   A  L+K+
Sbjct: 214 PFPSQRAELMPAERAFPITEIVNVLRNY-DFSKQRRLSFEYILFGGVNDSLVYAKELVKL 272

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  +INLI F+  PG +   +D + +  F + + + G  + IR  RG DI AACG L
Sbjct: 273 LRGLDCRINLIRFHAIPGVDLQGADMETMTAFRDYLTKHGIFATIRASRGEDIFAACGML 332

Query: 366 KSLSKRIPKVP 376
            +  ++  K  
Sbjct: 333 STAEQQAEKER 343


>gi|222529035|ref|YP_002572917.1| ribosomal RNA large subunit methyltransferase N
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455882|gb|ACM60144.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor bescii DSM
           6725]
          Length = 341

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 192/365 (52%), Gaps = 31/365 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +  +  +EL++ L  IG        RTSQI++W+Y +   D    +++  E+R  + 
Sbjct: 2   KRLIKDLTFDELKKWLENIG----EKPFRTSQIFEWLYKKNATDVMQFTNLPLELREKIE 57

Query: 66  QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             F I   +I+  +   DG + K+L     +       +E+V++P +    +CVS+QVGC
Sbjct: 58  DEFLINSLQILKHQ--SDGESIKFLFELCDKN-----GVESVFLPYRYGNAICVSTQVGC 110

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +     VRNL+A E++ Q++   +  G                 ++I+N+V+
Sbjct: 111 KMNCRFCASAIGGFVRNLSAGEMVDQIINVENFTG-----------------KRITNVVL 153

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MG GEP  N +NV K + I +   G +   R IT+ST G V  I R+ +    V LAISL
Sbjct: 154 MGSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISL 213

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N LR+ LVPIN+KYP+E ++ A  +Y   +N  R+TFEY ++ G+NDS   A  L 
Sbjct: 214 HAPNNSLRDKLVPINKKYPVEDIMKAVDYYIKRTNR-RVTFEYALIDGVNDSIECAQELG 272

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKG    +NLIP NP     +    ++ I  F E +K    +  IR   G  I AACG
Sbjct: 273 KMLKGKLVHVNLIPVNPVEEKGFRRPSKEKIKVFFETLKSYQINVTIRRELGSSISAACG 332

Query: 364 QLKSL 368
           QL+  
Sbjct: 333 QLRKR 337


>gi|312127903|ref|YP_003992777.1| radical sam enzyme, cfr family [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777922|gb|ADQ07408.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor hydrothermalis
           108]
          Length = 344

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 191/365 (52%), Gaps = 31/365 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +  +  +EL + L  +G        R +Q+++W+Y +   D    +++  E+R  ++
Sbjct: 2   KRLIKDLTIDELRKWLESVG----EKPFRATQVFEWLYKKNATDVMQFTNLPLELRKKID 57

Query: 66  QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             F I   +I+  +   DG + K+L     +       +E+V++P +    +CVS+QVGC
Sbjct: 58  DEFLINSLQILQHQ--SDGESIKFLFELCDKN-----GVESVFLPYRYGNAICVSTQVGC 110

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +     VRNLT  E++ Q++ A +  G                 ++I+N+V+
Sbjct: 111 RMNCRFCASAIGGFVRNLTPGEMVDQIINAENFTG-----------------KRITNVVL 153

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MG GEP  N +NV K + I +   G +   R IT+ST G V  I R+ +    V LAISL
Sbjct: 154 MGSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISL 213

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N LR+ LVPIN+KYP+E ++ A  +Y   +N  R+TFEY ++ G+NDS   A  L 
Sbjct: 214 HAPNNSLRDKLVPINKKYPIEDIMKAVDYYIQRTNR-RVTFEYALIDGVNDSIECAQELG 272

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKG    +NLIP NP     +    ++ I TF E ++       IR   G  I AACG
Sbjct: 273 KMLKGKLVHVNLIPVNPVEEKGFKRPSKEKIKTFFETLRSYQIQVTIRRELGSSISAACG 332

Query: 364 QLKSL 368
           QL+  
Sbjct: 333 QLRRR 337


>gi|317151954|ref|YP_004120002.1| radical SAM enzyme, Cfr family [Desulfovibrio aespoeensis Aspo-2]
 gi|316942205|gb|ADU61256.1| radical SAM enzyme, Cfr family [Desulfovibrio aespoeensis Aspo-2]
          Length = 344

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 134/363 (36%), Positives = 195/363 (53%), Gaps = 22/363 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +LI + + +LE  +       +  R R  QIW+W++ + +R  +GM+++S+ +R  L  
Sbjct: 2   HNLIELTKSDLEAFVAD---ELKEPRFRAEQIWQWLWQKRVRGVEGMTNLSKPLREKLAA 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I +PE+   + S DGT K+LLR      G    +ETV IP + R + C+S+QVGC++
Sbjct: 59  MAVITWPEVARVQQSEDGTIKFLLRL-----GDGKLVETVLIPMQDRYSQCLSTQVGCAM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG     RN+T  EIL QVL+ R  L D                  + N+V MG
Sbjct: 114 GCTFCSTGQLGFERNMTYGEILGQVLVGRQYLED-------------RGMNPLKNLVFMG 160

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N D + K L+      GLS S RR  +ST GF   +  +GE    + AISLHA 
Sbjct: 161 MGEPLLNLDTLLKVLNDLPCERGLSLSWRRSMVSTVGFPEQLRILGEMEVALPAISLHAP 220

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           + +LR  ++P   +  L+ L+ A R YP +    RITFEY++LKG+NDS   A  L +++
Sbjct: 221 TQELRARIMPKAARVHLDDLMAALRAYP-MRPRERITFEYLLLKGVNDSLEHADQLARLI 279

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
                KINLI +N   G  Y   D+  +  F + +   G ++ IR   G DI AACGQLK
Sbjct: 280 DRKKGKINLIAYNATEGLPYEAPDRAQVEAFEKRLWDHGLTAFIRRSMGADIKAACGQLK 339

Query: 367 SLS 369
           +  
Sbjct: 340 AAQ 342


>gi|254976171|ref|ZP_05272643.1| radical SAM protein [Clostridium difficile QCD-66c26]
 gi|255093561|ref|ZP_05323039.1| radical SAM protein [Clostridium difficile CIP 107932]
 gi|255315304|ref|ZP_05356887.1| radical SAM protein [Clostridium difficile QCD-76w55]
 gi|255517972|ref|ZP_05385648.1| radical SAM protein [Clostridium difficile QCD-97b34]
 gi|255651088|ref|ZP_05397990.1| radical SAM protein [Clostridium difficile QCD-37x79]
 gi|260684153|ref|YP_003215438.1| radical SAM protein [Clostridium difficile CD196]
 gi|260687812|ref|YP_003218946.1| radical SAM protein [Clostridium difficile R20291]
 gi|260210316|emb|CBA64637.1| radical SAM protein [Clostridium difficile CD196]
 gi|260213829|emb|CBE05812.1| radical SAM protein [Clostridium difficile R20291]
          Length = 343

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 133/368 (36%), Positives = 203/368 (55%), Gaps = 30/368 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK  L     +EL+E +  I         R SQI+ WIY +G + F  M++I + +R+ L
Sbjct: 4   KKIVLKNFTEDELKEFMKTI----DEKPFRGSQIFSWIY-KGAKTFDDMNNIPKSLRNKL 58

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +   I   +I  +  S  D T+K+L       I     IETV +   SR T+CVS+QVG
Sbjct: 59  EEVSCIGNIDIELKLESKVDNTKKYLFLLDDGNI-----IETVMMDYDSRVTVCVSNQVG 113

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +    L+RNL   EIL QV+  +                    G+++SN+V
Sbjct: 114 CRMGCNFCASTMDGLIRNLEPWEILDQVIKIQE-----------------DTGKRVSNLV 156

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG GEPL NF+N K+ L I ++  GL+   R ITLST G VP +  + + EI + LA+S
Sbjct: 157 LMGSGEPLDNFENTKQFLKIINEKNGLNIGYRHITLSTCGIVPKMYELADLEIAINLALS 216

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+  ++ R  ++P+   Y +E +++ACR+Y   +N  R+TFEY ++KG+NDS ++A  L
Sbjct: 217 LHSPYDEERRKIMPVANAYSIEEILNACRYYIKKTNR-RVTFEYSLIKGVNDSEKEAKAL 275

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+LKG+   +NLIP N     EY   D+  I  F + ++++   + +R   G DI  AC
Sbjct: 276 AKLLKGMLCHVNLIPINKVEEREYEKPDKAFIYKFRDSLEKNNIPATVRMSMGSDISGAC 335

Query: 363 GQLKSLSK 370
           GQL+   K
Sbjct: 336 GQLRRKYK 343


>gi|160893331|ref|ZP_02074118.1| hypothetical protein CLOL250_00880 [Clostridium sp. L2-50]
 gi|156865023|gb|EDO58454.1| hypothetical protein CLOL250_00880 [Clostridium sp. L2-50]
          Length = 361

 Score =  401 bits (1031), Expect = e-110,   Method: Composition-based stats.
 Identities = 119/376 (31%), Positives = 197/376 (52%), Gaps = 28/376 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +  +KK  +  MM +EL   +  +G P      R  QI++W++ +GI   + M+++ +++
Sbjct: 12  IEDIKKLDIRSMMFDELAVWVKSVGQPA----FRAKQIFEWVHAKGIAHAEDMTNVPKKL 67

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
              + +       E+       DGT K+L R     +     +E+V +  K   ++C+SS
Sbjct: 68  IEEIKKQHMYGVEEVTRLVSKQDGTNKFLFRLQDGNV-----LESVLMRYKHGNSVCISS 122

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC +    L+RNL A E+L Q+     + G+                 ++S
Sbjct: 123 QVGCRMGCRFCASTIGGLIRNLEASEMLDQIYAIERITGE-----------------RVS 165

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           NIV+MG GEPL N+DN+ + + I +D  G + S+R IT+S+ G VP I R+ +E + +  
Sbjct: 166 NIVVMGTGEPLDNYDNLIRFIRIINDEQGKNISQRNITVSSCGLVPQIKRLADEGLSITF 225

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+ +++ R  L+PI  KY +  L+D CR+Y   +   R+TFEY ++K  ND+P  A
Sbjct: 226 ALSLHSPTDEDRRKLLPIANKYSIAELMDVCRYYFEKTGR-RVTFEYSLVKDENDTPEHA 284

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++LK +   +NLIP NP    +Y  S    +  F   +++   +  IR   G DI 
Sbjct: 285 YKLAELLKNMHGHVNLIPVNPIKERKYCRSLNDSVEKFKYILEKKDINVTIRRSMGRDID 344

Query: 360 AACGQLKSLSKRIPKV 375
           AACGQL+   +     
Sbjct: 345 AACGQLRRKYEEAKDT 360


>gi|229828531|ref|ZP_04454600.1| hypothetical protein GCWU000342_00595 [Shuttleworthia satelles DSM
           14600]
 gi|229793125|gb|EEP29239.1| hypothetical protein GCWU000342_00595 [Shuttleworthia satelles DSM
           14600]
          Length = 392

 Score =  401 bits (1031), Expect = e-110,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 200/370 (54%), Gaps = 29/370 (7%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             +++  +  M  EEL   +  +G      + R  Q+++WI+ R   D+  MS++S+++R
Sbjct: 36  RAMRRIDIKSMNLEELTAYVEAMG----EKKFRARQLYEWIHRRQAADWDEMSNLSRDLR 91

Query: 62  HLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             L +   +   +  D +IS  DGTRK+L       +     +E+V +P     ++C+SS
Sbjct: 92  GRLMREADLTVLQEADCQISRLDGTRKYLFALSDGNM-----VESVLMPYHHGNSVCISS 146

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC +     +RNLT  E+L Q+   +    +                 ++S
Sbjct: 147 QVGCRMGCRFCASTIDGWLRNLTPAEMLDQIYRIQRDSKE-----------------RVS 189

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           N+V+MG GEPL NFDNV K + + SD  GL+ S+R IT+ST G VP I  + +  + + L
Sbjct: 190 NLVLMGTGEPLDNFDNVVKLIGLVSDENGLNISQRNITVSTCGIVPRIRELADLNLSITL 249

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           AISLHA S + R  L+PI  +Y L+ ++DACR+Y   +   R+TFEY ++ G+NDS  DA
Sbjct: 250 AISLHASSQETRRKLMPIAERYDLKEILDACRYYFSRTGR-RLTFEYALVAGVNDSREDA 308

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L  +L  +   +NLIP NP     +  SD++ ++ F   +++ G +  IR   G DI 
Sbjct: 309 ARLAGLLGDLNCHVNLIPVNPIKERNFHQSDRRALLAFRTQLEKYGVNVTIRREMGRDID 368

Query: 360 AACGQLKSLS 369
            ACGQL+   
Sbjct: 369 GACGQLRRRK 378


>gi|295100693|emb|CBK98238.1| 23S rRNA m(2)A-2503 methyltransferase [Faecalibacterium prausnitzii
           L2-6]
          Length = 346

 Score =  401 bits (1031), Expect = e-110,   Method: Composition-based stats.
 Identities = 129/362 (35%), Positives = 200/362 (55%), Gaps = 28/362 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +  +  E+L   L  +G P      R  QI+ W++ + + DF  M+D  + +   L 
Sbjct: 4   KRCISSLTLEQLTAELKAMGQPG----FRAKQIFHWVHQKLVTDFSAMTDQPKALLARLE 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I  P I   + + DGT K+LLR           IETV +      T+CVS+QVGC 
Sbjct: 60  EAFYIAAPIIERRQEAKDGTVKYLLRM-----ADGNCIETVVMRYHYGNTVCVSTQVGCR 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +     VRNL A EI  ++  A+  +G+                 +IS+IV+M
Sbjct: 115 MGCRFCASTQAGRVRNLEAGEICSEIYTAQKDIGE-----------------RISHIVLM 157

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEPL NFD V + L   S   G++   R I+LST G VP I R+ E+ + + L++SLH
Sbjct: 158 GIGEPLDNFDEVMRFLENISSPEGVNIGMRNISLSTCGLVPKIDRLAEKKLQLTLSVSLH 217

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +ND+R+ ++P+N  YP+E+L+ A R Y   +  RR++FEY M++G+NDS   A  L  
Sbjct: 218 APNNDIRSGMMPVNDAYPVEVLMQAVRRYQE-TTGRRVSFEYSMVRGVNDSDACARQLAD 276

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +++G+ A +NLIP NP  G  Y  +D  ++  F + ++  G ++ +R   G +I AACGQ
Sbjct: 277 LIRGMGAHVNLIPINPVDGSPYSATDAANVRRFQQKLESLGVNATVRRRLGSEISAACGQ 336

Query: 365 LK 366
           L+
Sbjct: 337 LR 338


>gi|149021632|ref|ZP_01835663.1| hypothetical protein CGSSp23BS72_07840 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930093|gb|EDK81079.1| hypothetical protein CGSSp23BS72_07840 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 361

 Score =  401 bits (1031), Expect = e-110,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 209/373 (56%), Gaps = 26/373 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    +                 ++++IV+M
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVNHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N++NV       +D  G++   R IT+STSG    I    +E + + LA+SLH
Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQINLAVSLH 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A++N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L +
Sbjct: 221 ALNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279

Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AA
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAA 339

Query: 362 CGQLKSLSKRIPK 374
           CGQL+  + +  +
Sbjct: 340 CGQLRFNTMKRDR 352


>gi|304408290|ref|ZP_07389938.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
 gi|304342759|gb|EFM08605.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
          Length = 357

 Score =  401 bits (1031), Expect = e-110,   Method: Composition-based stats.
 Identities = 131/372 (35%), Positives = 210/372 (56%), Gaps = 26/372 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+ G+ +++L   LL+ G    H + R +Q+W+W+Y + + D+  M+D++ +   LL +
Sbjct: 6   PSIYGLTQDQLAAWLLERG----HKKFRATQVWEWLYRKRVTDYAAMTDVNPDCIALLAE 61

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           HF+I   E   ++ S DGT K+LLR     +     IETV +  K   ++CV++QVGC++
Sbjct: 62  HFAITTLEEHTKQESTDGTIKFLLRLTDGNL-----IETVLMRHKFGLSVCVTTQVGCNI 116

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC +G     R+LT+ EI+ Q++  +  L                 G ++++IV+MG
Sbjct: 117 GCSFCASGLLAKSRDLTSGEIVGQIMKVQLHLDQ------------AGQGERVTHIVVMG 164

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
           +GEP  NF N+   +++  D  GL+   R IT+STSG    I    +  + V LAISLHA
Sbjct: 165 IGEPFDNFANMVDFINVVKDHKGLAIGPRHITVSTSGLANKIYEFTDSNLQVNLAISLHA 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  ++ INR  P+  L++A  +Y   +N  RIT EY++LK +ND    AL L ++
Sbjct: 225 PNDELRTRIMKINRAIPIAKLMEAIDYYLAKTNR-RITLEYILLKDVNDRKEHALELAEL 283

Query: 306 L--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +  +   A +NLIP+NP     +Y  S+Q  I  F + +K+ G S  +R   G DI AAC
Sbjct: 284 VGERRSLANVNLIPYNPVDEHSQYQRSEQDSIREFYDTLKKQGVSCSVRLEHGTDIDAAC 343

Query: 363 GQLKSLSKRIPK 374
           GQL+S   R  +
Sbjct: 344 GQLRSKQIRSAR 355


>gi|119510469|ref|ZP_01629602.1| hypothetical protein N9414_01747 [Nodularia spumigena CCY9414]
 gi|119464891|gb|EAW45795.1| hypothetical protein N9414_01747 [Nodularia spumigena CCY9414]
          Length = 352

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 132/362 (36%), Positives = 187/362 (51%), Gaps = 31/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+G    EL   + + G P      R  Q+  WIY +G+R    +S   ++ R  + +
Sbjct: 19  PPLLGASVAELSLWVQQQGQPA----YRGKQLHDWIYHKGVRSLADISAFPKQWRAEVAE 74

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I    I    ++ DGT K+LL+     I     IETV IP   R T+CVS+QVGC +
Sbjct: 75  -VPIGRSTIHHRAVAPDGTIKYLLKLADGQI-----IETVGIPTAKRLTVCVSTQVGCPM 128

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG     RNL   EI+ QVL  +                     +++S++V MG
Sbjct: 129 ACDFCATGKGGFTRNLARHEIVDQVLTVQE-----------------DFQQRVSHVVYMG 171

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
           MGEPL N +NV KSL   +  +G    +R +T+ST G    I ++    + V LA+SLHA
Sbjct: 172 MGEPLLNTENVLKSLKSLNQDVG--IGQRSLTVSTVGIRDRIRQLAQHNLQVTLAVSLHA 229

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +  LR  L+P  R YPLE L+D CR Y  ++  RRI+FEYV+L G ND P  A+ L K 
Sbjct: 230 PNQALREELIPSARPYPLEDLLDECREYVEIT-RRRISFEYVLLAGFNDLPEHAMQLAKC 288

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G  + +NLIP+NP    +Y       I  F   +K+   +  +R  RGL+  AACGQL
Sbjct: 289 LRGFQSHVNLIPYNPISEVDYKRPSSDRIQAFVNILKQQNTAVSVRYSRGLEADAACGQL 348

Query: 366 KS 367
           ++
Sbjct: 349 RA 350


>gi|305664559|ref|YP_003860846.1| radical SAM enzyme, Cfr family protein [Maribacter sp. HTCC2170]
 gi|88708576|gb|EAR00812.1| radical SAM enzyme, Cfr family protein [Maribacter sp. HTCC2170]
          Length = 348

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 205/367 (55%), Gaps = 24/367 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KK+ +  +  ++L E  +  G        R +Q+++W++ +    F+ M++IS+E R L
Sbjct: 5   IKKKDIRALTLDQLREFFVANGDKA----FRGNQVYEWLWKKSAYSFEVMTNISKETRTL 60

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F I + ++   + S DGT K  +R     +     +E+V IP K+R T CVSSQVG
Sbjct: 61  LTSNFVINHIKVDQMQRSKDGTIKNAVRLHDDLV-----VESVLIPTKTRTTACVSSQVG 115

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL C FC T   K +RNL  +EI  QV+              I+        R +SNIV
Sbjct: 116 CSLDCKFCATARLKRMRNLNPDEIFDQVVA-------------IDNESRLYFNRPLSNIV 162

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
            MGMGEPL N++NV K++   +   GL  S +RIT+STSG    I ++ +E +   LA+S
Sbjct: 163 FMGMGEPLMNYNNVLKAIDKITSPDGLGMSPKRITVSTSGVPKMIRKMADEQVKFKLAVS 222

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+  +++R  ++P N    L  L +A +++   +   RIT+EYV+ KGIND+  DA  L
Sbjct: 223 LHSAIDEIRTSIMPFNATLTLADLREALQYWYSKT-KSRITYEYVVWKGINDTLNDAEAL 281

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +   +  P+K+NLI +NP    ++  ++ K I  + + ++R G +  +R  RG DI AAC
Sbjct: 282 VDFCRFAPSKVNLIEYNPIDDGDFQQANNKAIDMYVDTLERRGITVTVRRSRGKDIDAAC 341

Query: 363 GQLKSLS 369
           GQL + S
Sbjct: 342 GQLANKS 348


>gi|220928956|ref|YP_002505865.1| ribosomal RNA large subunit methyltransferase N [Clostridium
           cellulolyticum H10]
 gi|254807165|sp|B8I259|RLMN_CLOCE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|219999284|gb|ACL75885.1| radical SAM enzyme, Cfr family [Clostridium cellulolyticum H10]
          Length = 349

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 138/362 (38%), Positives = 197/362 (54%), Gaps = 30/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ M  EELE+ L ++G      + R  QI+KWI   GIR F  M++IS+++R  L +
Sbjct: 2   INLMNMTLEELEQMLSEMG----QQKFRAKQIFKWI-NSGIRSFSDMTNISKQLRDELEK 56

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              I   +IVD   S  D T K+L       I     IE+V +  K   T C+SSQ GC 
Sbjct: 57  VSKISRLKIVDRLQSKIDSTVKYLFELEDGNI-----IESVLMEYKHGFTACISSQAGCR 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +      RNLT  E+L QV+  +                    G +I +IV+M
Sbjct: 112 MGCKFCASTGAGFSRNLTPGEMLDQVMTMQE-----------------DSGNRIGHIVLM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEPL N++NV K L I +   GL    R I+LST G VP I ++ +E I + L++SLH
Sbjct: 155 GIGEPLDNYENVIKFLKIVNHPDGLMIGMRNISLSTCGVVPRILQLAKENIPITLSVSLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  +D R+ ++P+N+ Y ++ LI AC+ Y  +S  RRITFEY M+ G NDS +DA  L  
Sbjct: 215 SARDDKRSAMMPVNKTYCIDKLISACKIY-TVSTKRRITFEYAMILGENDSEQDARELAG 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+   +NLIP N   G  Y  S +  I  F   ++  G  + +R   G DI AACGQ
Sbjct: 274 LLKGMLCHVNLIPVNTVTGNGYKKSSRIHIDKFKNILESKGIETTVRRELGSDINAACGQ 333

Query: 365 LK 366
           L+
Sbjct: 334 LR 335


>gi|312134889|ref|YP_004002227.1| radical sam enzyme, cfr family [Caldicellulosiruptor owensensis OL]
 gi|311774940|gb|ADQ04427.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor owensensis OL]
          Length = 344

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 121/365 (33%), Positives = 191/365 (52%), Gaps = 31/365 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +  +  +EL++ L  IG        R SQI++W+Y +   D    +++  E+R  ++
Sbjct: 2   KRLIKDLTFDELKKWLENIG----EKPFRASQIFEWLYKKNATDVMQFTNLPLELREKID 57

Query: 66  QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             F I   +I++ +   DG + K+L     +       IE+V++P +    +CVS+QVGC
Sbjct: 58  DEFLINSLQILEHQ--SDGKSIKFLFELCDKN-----GIESVFLPYRYGNAICVSTQVGC 110

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +     VRNL+A E++ Q++   +  G                 ++I+N+V+
Sbjct: 111 KMNCRFCASAIGGFVRNLSAGEMVDQIINVENFTG-----------------KRITNVVL 153

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MG GEP  N +NV K + I +   G +   R IT+ST G    I R+ +    V LAISL
Sbjct: 154 MGSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIAEGIYRLCDFPKQVNLAISL 213

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N LR+ LVP+N+KYP+E ++ A  +Y   +N  R+TFEY ++ G+NDS   A  L 
Sbjct: 214 HAPNNRLRDKLVPMNKKYPVEDIMKAVDYYIQKTNR-RVTFEYALIDGVNDSIECAEELG 272

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG    +NLIP NP     +    ++ I  F E ++       IR   G  I AACG
Sbjct: 273 QMLKGKLVHVNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAACG 332

Query: 364 QLKSL 368
           QL+  
Sbjct: 333 QLRRR 337


>gi|160945217|ref|ZP_02092443.1| hypothetical protein FAEPRAM212_02736 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442948|gb|EDP19953.1| hypothetical protein FAEPRAM212_02736 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105558|emb|CBL03102.1| 23S rRNA m(2)A-2503 methyltransferase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 346

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 199/363 (54%), Gaps = 28/363 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  +  +   EL + L  +G P      R  QI+ W++ + + +F  M+D  + +   L
Sbjct: 3   QKRCISSLTLAELTDELKALGQPG----FRAKQIFHWVHQKLVTEFSAMTDQPKTLLAKL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + F I  P+I   + + DGT K+LLR           IETV +      T+CVS+QVGC
Sbjct: 59  EETFYIAAPQIERRQEAKDGTVKYLLRM-----ADGNCIETVVMRYHYGNTVCVSTQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +     VRNL A EI  ++  A+  +G+                 +IS+IV+
Sbjct: 114 RMGCRFCASTQAGRVRNLEAGEICSEIYTAQKDIGE-----------------RISHIVL 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEPL NFD V + L   +   G++   R I+LST G VP I ++ E+ + + L+ISL
Sbjct: 157 MGIGEPLDNFDEVMRFLENITSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSISL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N +R+ ++P+N  YP+E LI   R Y   +  RR++FEY M++G+NDS   A  L 
Sbjct: 217 HAPTNQIRSSMMPVNDAYPVEQLIQTVRRYQE-TTGRRVSFEYSMVRGVNDSDVCAKQLA 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +++G+ A +NLIP NP  G  Y  +D  ++  F + ++  G ++ +R   G +I AACG
Sbjct: 276 DLIRGMGAHVNLIPINPVDGSPYSATDAANVRRFQQKLESLGVNATVRRRLGSEISAACG 335

Query: 364 QLK 366
           QL+
Sbjct: 336 QLR 338


>gi|254421960|ref|ZP_05035678.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7335]
 gi|196189449|gb|EDX84413.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7335]
          Length = 372

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 127/362 (35%), Positives = 189/362 (52%), Gaps = 31/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+G   E L E +++ G P      R  Q+ +WIY +GIR    ++  S++ R  ++ 
Sbjct: 30  VPLLGRSIEALTEWVIQHGQPA----YRGKQLHQWIYQKGIRSLDEVTVFSKKWRAEVS- 84

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F +    I     S DGT K+LLR     I     IE V IP   R T+CVSSQ+GC +
Sbjct: 85  GFPVGRSHIHHRSESPDGTIKYLLRLRDGLI-----IEAVGIPSDKRLTVCVSSQIGCPM 139

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG     RNL   EI+ QVL  +                     R++SNIV MG
Sbjct: 140 GCDFCATGKGGFTRNLETYEIVDQVLTVQE-----------------DFQRRVSNIVFMG 182

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEPL N + V  ++   +    +   +R +T+ST G   +I R+ E+ + + LA+SLHA
Sbjct: 183 MGEPLLNTEAVIGAVRSLNQD--IGIGQRMMTVSTVGIPGHIRRLAEQQMQITLAVSLHA 240

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +  LR  L+P  ++YPL  L+D CR Y  ++   R+TFEY++L  +ND    A  L   
Sbjct: 241 SNQALRTRLIPSAKQYPLSALLDECRDYVKMTGR-RVTFEYILLADLNDRSEHAAELASE 299

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G  + +NLIP+NP    +Y    +  +  F++ +K  G +  +R  RGL+  AACGQL
Sbjct: 300 LRGFQSHVNLIPYNPISEVDYQRPSRARVEGFTQQLKDKGIAVSVRYSRGLEKDAACGQL 359

Query: 366 KS 367
           ++
Sbjct: 360 RA 361


>gi|218438587|ref|YP_002376916.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC
           7424]
 gi|218171315|gb|ACK70048.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7424]
          Length = 355

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 125/362 (34%), Positives = 188/362 (51%), Gaps = 31/362 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    +L + + K G P      R  Q+ +WIY +G+R    +S   +  R  L   +
Sbjct: 18  LLGKSLPQLTQWVQKQGQPS----YRGKQLHQWIYEKGVRSLNEISVFPKSWREDLKD-Y 72

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I   +I    I+ D TRK+LLR     I     IETV IP + R T+CVSSQVGC + C
Sbjct: 73  PIGRSDIHYRSIAPDKTRKYLLRLEDGLI-----IETVGIPTEKRLTVCVSSQVGCPMDC 127

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNLTA EI+ QVL  +                     R++S++V MGMG
Sbjct: 128 DFCATGKGGFTRNLTASEIVDQVLTVQE-----------------DFQRRVSHVVFMGMG 170

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVS 247
           EPL N   V  ++   ++ +G+    R +T+ST G    I ++   ++ + LA+SLHA +
Sbjct: 171 EPLLNLKEVVPAVRTLNEDVGIGM--RSLTISTVGLPSKIEKLAQHQLQLTLAVSLHAPN 228

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  ++YPL+ L+D C  Y  ++   R+TFEY++L  +ND P  A  L   ++
Sbjct: 229 QKLREQLIPSAKRYPLKYLLDNCHKYVEMTKR-RVTFEYILLADVNDLPHHAQELATQIR 287

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP    +Y   + + I  F + ++    +  +R  RGL   AACGQL+ 
Sbjct: 288 GFQSHVNLIPYNPISEADYQRPNGERINAFMKILQEEKIAVSVRYSRGLQADAACGQLRE 347

Query: 368 LS 369
             
Sbjct: 348 RK 349


>gi|313894907|ref|ZP_07828467.1| 23S rRNA m2A2503 methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312976588|gb|EFR42043.1| 23S rRNA m2A2503 methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 346

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 129/363 (35%), Positives = 193/363 (53%), Gaps = 26/363 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++ GM  EEL  AL   GIP    R R +QI + IY RG   F  ++ + + +R  L ++
Sbjct: 2   NIFGMTVEELRAALAPFGIP----RFRAAQIAEGIYRRGAVSFDAITSLPKSLRAQLAEN 57

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F+I  P +V+   S DG T K L  F           ETV +      ++C+S+Q GC++
Sbjct: 58  FTIERPTVVNRLHSADGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCISTQAGCAM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    LVRNLT  EI  Q +     L                 G ++  IV+MG
Sbjct: 113 GCAFCASTLHGLVRNLTRGEIAAQAIGIADFLRQ--------------EGARVDTIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N+DNV  +L +  +   L    R +TLSTSG VP I R+ +E I + LAISLHA
Sbjct: 159 SGEPLENYDNVVGALRLLHEDYVLGLGYRGMTLSTSGIVPGIERLADEGIPISLAISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR+ ++P+NR+YPL  ++ A RHY   +   R+T+EY++++ +ND  R+A  L  +
Sbjct: 219 PTDELRSRIMPVNRRYPLADVLRAARHYAARTKR-RVTYEYILIRDVNDGVREAEQLAAL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+   A +NLIP NP             I  F   ++    ++ +R   G DI AACGQL
Sbjct: 278 LRDRLASVNLIPINPVAERSLHRPSSNAIRRFQRVLEERHITATLRREMGTDIRAACGQL 337

Query: 366 KSL 368
           ++ 
Sbjct: 338 RNR 340


>gi|332521669|ref|ZP_08398122.1| radical SAM enzyme, Cfr family [Lacinutrix algicola 5H-3-7-4]
 gi|332042758|gb|EGI78958.1| radical SAM enzyme, Cfr family [Lacinutrix algicola 5H-3-7-4]
          Length = 346

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 202/366 (55%), Gaps = 24/366 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK+ +  + +E+L E  +K G        R +Q+++W++ +G   F+ M++IS+E R +L
Sbjct: 4   KKKDIRALSKEQLREFFVKEGDKA----FRGNQVYEWLWGKGAHTFEDMTNISKETRQML 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F I +  +   + S DGT K  ++     I     +E+V IP ++R T CVSSQVGC
Sbjct: 60  QDNFVINHISVDTMQRSSDGTVKNAVKLHDGLI-----VESVLIPTETRTTACVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C FC T   K +RNL  +EI  QV+              I+        R +SNIV 
Sbjct: 115 SLDCKFCATSRLKRMRNLNPDEIYDQVVA-------------IDKESKLYFNRPLSNIVF 161

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N++NV K++   +   GL  S +RI +STSG    I ++ ++ +   LA+SL
Sbjct: 162 MGMGEPLMNYNNVIKAIDKITSPEGLGMSPKRIVVSTSGVPKMIKKMADDAVKFNLAVSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  +++R  ++P N+ +PL  L +A  ++   +   +IT+EYV+  GIND   D   L+
Sbjct: 222 HSAIDEVRTEIMPFNKTFPLNDLKEALEYWYEKTQR-KITYEYVVWDGINDRREDINALV 280

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K  K +P KIN+I +NP    ++  +  K I  + + ++ +     +R  RG DI AACG
Sbjct: 281 KFCKYVPCKINIIEYNPIDDGQFQQASSKAIDNYIQALESNNIVVNVRRSRGKDIDAACG 340

Query: 364 QLKSLS 369
           QL + S
Sbjct: 341 QLANKS 346


>gi|253574078|ref|ZP_04851420.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846555|gb|EES74561.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 351

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 132/372 (35%), Positives = 202/372 (54%), Gaps = 24/372 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+S+ GM +++L   LL  G    H R R   +W+ +Y + +  F  M  +  E   L
Sbjct: 1   MNKQSIYGMTKDQLAAWLLDRG----HKRGRAEMVWEGLYRKRVTAFDAMEGVHPECLAL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L + F I   E    + S DGT K+L R     +     IETV +  K   ++CV++QVG
Sbjct: 57  LKEQFVIETLEEHVRQESIDGTIKFLFRLQDGNL-----IETVLMRHKFGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+LT+ EI+ QV+  +              +     G ++S+IV
Sbjct: 112 CNIGCSFCASGLLKKSRDLTSGEIVEQVMKVQMH------------LDRQGKGERVSHIV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  N+DN+   L +  D  GL+   R IT+STSG    I    + ++ V LA+S
Sbjct: 160 VMGIGEPFDNYDNMADFLRVIQDPKGLAIGPRHITVSTSGLADKIIEFADSDLQVNLAVS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR  ++ IN+  P+E L+ A  +Y   +N  R+T EY++LKG+ND    A  L
Sbjct: 220 LHAPNNELRTRIMKINKAIPIEKLMAAIDYYLERTNR-RLTIEYILLKGVNDGTEHAQEL 278

Query: 303 IKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
             +L      +NLIP+NP     +Y  S+QK ++ F + +K+ G S  +R   G DI AA
Sbjct: 279 ADLLGDRFVNVNLIPYNPVDEHSQYQRSEQKSVLAFYDALKKRGLSVSVRLEHGADIDAA 338

Query: 362 CGQLKSLSKRIP 373
           CGQL+S   + P
Sbjct: 339 CGQLRSKQLKQP 350


>gi|86140644|ref|ZP_01059203.1| hypothetical protein MED217_15870 [Leeuwenhoekiella blandensis
           MED217]
 gi|85832586|gb|EAQ51035.1| hypothetical protein MED217_15870 [Leeuwenhoekiella blandensis
           MED217]
          Length = 347

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 135/370 (36%), Positives = 203/370 (54%), Gaps = 25/370 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   +K  +  + REEL +  +  G        R +Q+++W++V+G   F  M++IS+E 
Sbjct: 1   MKNTQK-DIRALSREELRDFFVSQG----EKAFRGNQVYEWLWVKGAHSFDDMTNISKET 55

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L++HF I + ++   + S DGT K  ++           +E+V IP  SR T CVSS
Sbjct: 56  RAFLDEHFVINHIKVDQMQRSSDGTIKNAVKLHDNLT-----VESVLIPTASRITACVSS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL C FC T   K +RNL  +EI  QV+              I+        R +S
Sbjct: 111 QVGCSLNCKFCATARLKRMRNLNPDEIFDQVVA-------------IDQQSRLYHNRPLS 157

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           NIV MGMGEPL N+ NV KS+   +D  GL  S +RIT+STSG    I ++ + E+   L
Sbjct: 158 NIVFMGMGEPLMNYKNVVKSIEKITDPEGLGMSPKRITVSTSGVPKIIKKMADDEVKFNL 217

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+  +D+R  ++P N + PL+ L +A   Y  +   +RIT+EYV+ +GIND  +D 
Sbjct: 218 AVSLHSALDDVRTDIMPFNEQMPLQELKEAL-QYWYVKTKKRITYEYVVWRGINDQDKDI 276

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             LI     +P+K+NLI +NP    ++  +D   I  +   ++  G +  +R  RG DI 
Sbjct: 277 EALIDFCLAVPSKVNLIEYNPIDDGQFQQADPLAIDRYVAKLEDRGITVTVRRSRGKDID 336

Query: 360 AACGQLKSLS 369
           AACGQL + +
Sbjct: 337 AACGQLANKN 346


>gi|268678701|ref|YP_003303132.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616732|gb|ACZ11097.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM
           6946]
          Length = 358

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 142/382 (37%), Positives = 214/382 (56%), Gaps = 42/382 (10%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++KE++  + +EEL E +            R  QI++W+Y + +  F  M ++ +E++  
Sbjct: 1   MEKENIFDLSKEELSEVIK--------PAFRAKQIYQWLYQKYVTSFDEMKNLPKELKEQ 52

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-------------E 110
           LN+ + +    IV  + SCDG++K+L             +E V +P              
Sbjct: 53  LNETYYLDPLRIVTIEESCDGSKKYLFALKDN-----QTVEAVLLPMKQEQVDEEGKLVH 107

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
            +R T+C+SSQVGC + C+FC TG     RNLTA EI  QVL+ +               
Sbjct: 108 HARYTICISSQVGCKIGCAFCLTGKSGFKRNLTAGEITTQVLMIKRDNAI---------- 157

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  +  NIV MGMGEPL N  NV K++ I SD  GLS S RR T+STSG    I +
Sbjct: 158 ----AENRRVNIVYMGMGEPLDNLTNVSKAVRIFSDLDGLSISPRRQTISTSGLSSQIEK 213

Query: 231 VGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +G+ ++G++LAISLHAV +DLR  L+PIN+ Y +E +++A R +P +   +R+ FEY+++
Sbjct: 214 LGKMDLGILLAISLHAVDDDLRQKLMPINKAYNIESIMNAVRGFP-IDARKRVMFEYLVM 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           KG+ND  + A  L+K+L GI AK+NLI FNP  G ++     KD++ F + +   G    
Sbjct: 273 KGVNDDQKSAKKLVKLLHGIKAKVNLIYFNPHAGSDFDRPSTKDMIAFQQYLVDHGVLCT 332

Query: 350 IRTPRGLDILAACGQLKSLSKR 371
           IR  +GLDI AACGQLK   ++
Sbjct: 333 IRQSKGLDISAACGQLKDKEQK 354


>gi|167747880|ref|ZP_02420007.1| hypothetical protein ANACAC_02609 [Anaerostipes caccae DSM 14662]
 gi|167652702|gb|EDR96831.1| hypothetical protein ANACAC_02609 [Anaerostipes caccae DSM 14662]
          Length = 354

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 114/353 (32%), Positives = 195/353 (55%), Gaps = 27/353 (7%)

Query: 31  VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWL 89
            + R  QI++W + R       M+++ + ++  L + +     + V+  +S  DGTRK+L
Sbjct: 22  KKFRAKQIFEWFHKRLASSLDEMNNLPKNLKEKLQEKYEAAELKEVETYVSRIDGTRKYL 81

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
            +           IE+V +  K   ++C+SSQ GC + C FC +    L RNL   E+L 
Sbjct: 82  FQLND-----GNTIESVLMKYKHGNSVCISSQAGCRMGCRFCASTLGGLDRNLLPSEMLG 136

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q+   +   G+                 ++SN+V+MG GEPL N++N+ + + + +D  G
Sbjct: 137 QIYYIQKDTGE-----------------RVSNVVVMGTGEPLDNYENLLRFIRLLTDEKG 179

Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
           L+ S+R +T+ST G VP I  + +E + + LAISLHA ++++R  L+P+  +Y +E L+ 
Sbjct: 180 LNLSQRNLTVSTCGLVPKIRELADEKLQMTLAISLHASNDEMRKSLMPVANQYSMEDLLA 239

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           AC++Y   +   RITFEY ++  +NDSP++A  L + L G P  +NLIP NP    ++  
Sbjct: 240 ACKYYFDRTGR-RITFEYSLVAEVNDSPQNAKELCRFLGGFPCHVNLIPVNPIKERDFRQ 298

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
           S  + +  F   ++++  +  IR   G DI AACGQL+   K++  V +QE++
Sbjct: 299 SMPEFVNDFKNILEKNRVNVTIRREMGRDINAACGQLR--RKKLNSVEKQEIR 349


>gi|320530185|ref|ZP_08031255.1| radical SAM enzyme, Cfr family [Selenomonas artemidis F0399]
 gi|320137618|gb|EFW29530.1| radical SAM enzyme, Cfr family [Selenomonas artemidis F0399]
          Length = 346

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 131/363 (36%), Positives = 194/363 (53%), Gaps = 26/363 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++ GM  EEL  AL   GIP    R R +QI + IY RG   F  ++ + + +R  L ++
Sbjct: 2   NIFGMTVEELRAALAPFGIP----RFRAAQIAEGIYRRGAVSFDAITSLPKSLRAQLAEN 57

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F+I  P +V+   S DG T K L  F           ETV +      ++C+S+Q GC++
Sbjct: 58  FTIERPTVVNRLHSADGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCISTQAGCAM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    LVRNLT  EI  Q +     L                 G ++  IV+MG
Sbjct: 113 GCAFCASTLHGLVRNLTRGEIAAQAIGIADFLRQ--------------EGARVDTIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N+DNV  +L +  +   L    R +TLSTSG VP I R+ +E I + L+ISLHA
Sbjct: 159 SGEPLENYDNVVGALRLLHEDYVLGLGYRGMTLSTSGIVPGIERLADEGIPISLSISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR+ ++P+NR+YPL  ++ A RHY  +   RRIT+EY++++ +ND  R A  L  +
Sbjct: 219 PTDELRSRIMPVNRRYPLADVMRAARHY-AVRTKRRITYEYILIRDVNDGVRAAEQLAAL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G  A +NLIP NP             I  F   ++    ++ +R   G DI AACGQL
Sbjct: 278 LRGRLASVNLIPINPVAERNLHRPSSNVIRRFQRTLEERHITATLRREMGTDIQAACGQL 337

Query: 366 KSL 368
           ++ 
Sbjct: 338 RNR 340


>gi|207723161|ref|YP_002253560.1| hypothetical protein 48 [Ralstonia solanacearum MolK2]
 gi|206588355|emb|CAQ35318.1| conserved hypothetical protein 48 [Ralstonia solanacearum MolK2]
          Length = 396

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 133/384 (34%), Positives = 195/384 (50%), Gaps = 17/384 (4%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN +   +L+    + L      +G        R  Q+ +WI+  G  DF  M+D+++ +
Sbjct: 1   MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L    +I  P ++ + +S DGTRKWL+      +G    +ETVYIPE++RGTLCVSS
Sbjct: 55  REKLATRATIQAPAVISDHLSSDGTRKWLV-----DVGAGNAVETVYIPEETRGTLCVSS 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC++ C FC TG Q   RNL+  EI+ Q+                             
Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWXXXXXXXXXXXXXXXXXXXXXXXXXXXX 169

Query: 181 NIVMMGMGEPLCNFDNV------KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
                                    ++ +  D      S+RR+TLSTSG VP + R+  +
Sbjct: 170 XXXXXXXXXXXXXXXXXXXXXXXVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSRD 229

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           + V LA+SLHA ++ LR++LVP+N+KYPL  L+ ACR Y   +    ITFEY ML G+ND
Sbjct: 230 LPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVND 289

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           S   A  L++++  +P K NLIPFNP+P      S+ + I  FS+ +  +G  + IR  R
Sbjct: 290 SIEHARELLRVIADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTR 349

Query: 355 GLDILAACGQLKSLSKRIPKVPRQ 378
           G DI AACGQL    K   ++  +
Sbjct: 350 GDDIDAACGQLAGEVKDRTRLAER 373


>gi|210634763|ref|ZP_03298291.1| hypothetical protein COLSTE_02218 [Collinsella stercoris DSM 13279]
 gi|210158703|gb|EEA89674.1| hypothetical protein COLSTE_02218 [Collinsella stercoris DSM 13279]
          Length = 348

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 121/375 (32%), Positives = 194/375 (51%), Gaps = 29/375 (7%)

Query: 1   MNFLKK-ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
           M  + +   +  +  EEL++ + ++G P      R  Q+ +WI+ + +  F  M+++   
Sbjct: 1   MERITRSRDIRLLTLEELQDLVKELGQPA----FRAKQLNEWIHDKNVCSFDEMTNLPAA 56

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           +R  L++ FS   P  + +++S DG+RK+LL+F        V +ETV +P +++  +C+S
Sbjct: 57  LREKLSERFSFNVPVELVKQVSKDGSRKYLLQFSD-----GVSVETVGMPNRNKLAVCIS 111

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ GC++ C+FC TG   L R+LTA+E++ QVL      G+                 ++
Sbjct: 112 SQAGCAMGCAFCATGLAGLSRSLTAQEMVDQVLHVARDFGE-----------------RV 154

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
           +++V MG GEP  NFD   ++L I +D  GL+   R +T+ST G +P I R  E      
Sbjct: 155 TSVVFMGQGEPFANFDATVQALRILNDPDGLAIGARHLTVSTCGVIPGIRRFAELPEQFT 214

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLH+     RN L+P  +KY L  L +A + Y   +   R T+E+ M+ GIND+  +
Sbjct: 215 LAISLHSAIQGTRNQLMPGVKKYTLLRLHEAIQLYVEKTGR-RPTYEFAMIDGINDTSPE 273

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
              L+    G    +NLI  N  P   +  S  + + +    +   G  + IR  RG DI
Sbjct: 274 MQALVDFCAGTLCHVNLIQLNNIPDSPFRPSPIEKVESLQRRLTMHGVETTIRNSRGSDI 333

Query: 359 LAACGQLKSLSKRIP 373
            AACGQLK    R  
Sbjct: 334 DAACGQLKQRRFRAQ 348


>gi|187778899|ref|ZP_02995372.1| hypothetical protein CLOSPO_02494 [Clostridium sporogenes ATCC
           15579]
 gi|187772524|gb|EDU36326.1| hypothetical protein CLOSPO_02494 [Clostridium sporogenes ATCC
           15579]
          Length = 348

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 136/362 (37%), Positives = 204/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+++ +  EEL+E L+     +     R  QI+ WIY + I DF  M +I ++ ++LL  
Sbjct: 8   ENILDLTLEELKEWLVS----KEEKAFRAKQIFNWIYDKLIFDFNNMKNIPEKTKNLLYD 63

Query: 67  HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  P++V + IS D  T K+L  +    I     IE+V +  K   ++CVS+QVGC 
Sbjct: 64  NFYIGVPKVVKKLISQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 118

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    ++RNLT+ EIL Q++ A+  +G+                 +ISN+V+M
Sbjct: 119 MGCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           G GEPL NF NV K L   +    L+  +R ITLST G VP I  + ++   + LAISLH
Sbjct: 162 GSGEPLDNFGNVTKFLDSVTSENTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 221

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  + LR  ++PI  KY ++ L++AC +Y   +N  RITFEY ++KG NDS ++A  L  
Sbjct: 222 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKELSS 280

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+G    +NLIP N      Y  S  K+I +F   +K +G  + IR   G DI AACGQ
Sbjct: 281 VLRGKLCHVNLIPVNEIKENSYEKSTSKNIESFGNILKENGIETTIRREMGADINAACGQ 340

Query: 365 LK 366
           L+
Sbjct: 341 LR 342


>gi|328953509|ref|YP_004370843.1| Ribosomal RNA large subunit methyltransferase N [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453833|gb|AEB09662.1| Ribosomal RNA large subunit methyltransferase N [Desulfobacca
           acetoxidans DSM 11109]
          Length = 350

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/365 (41%), Positives = 214/365 (58%), Gaps = 26/365 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L  + + + E+ ++  G        R  Q+ KW++ +G  +F  M+DI +EVRHLL +
Sbjct: 5   INLKELTQTDFEQLMVSWG----QAPFRARQVQKWLF-KGATEFNAMTDIGKEVRHLLQE 59

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I    ++  + S DG+ K+        +     IE+V IPE    TLC+SSQVGC+ 
Sbjct: 60  KSYISQLALLARRRSADGSEKFSFGLSDGEV-----IESVLIPENDHYTLCLSSQVGCAQ 114

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG + L RNL+  EI+ QVL ARSL+G                   ISN+V MG
Sbjct: 115 GCRFCLTGRRGLTRNLSPAEIINQVLAARSLVGKRQA---------------ISNLVFMG 159

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL NF N+ K+L+I     GL+FS RR+T+ST G  P I  +G  I V LA+SL+A 
Sbjct: 160 MGEPLDNFANLVKALTIILAPWGLNFSYRRVTVSTVGLAPLIPALGHAIRVNLAVSLNAP 219

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ LR+ L+P+NRKYPL  +I+ACR +P L   RRITF YV+L+GIND+P  A  L ++L
Sbjct: 220 NDALRSQLMPVNRKYPLAQIIEACRAFP-LPPHRRITFCYVLLQGINDTPSHARELSRLL 278

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +G  AKINLIPFNP     +     + ++ F + + +  Y++ IR  RG DI AACGQL 
Sbjct: 279 QGFRAKINLIPFNPDSCLPFKRPTPEAVLAFQDILIQKHYTTLIRESRGADISAACGQLA 338

Query: 367 SLSKR 371
              +R
Sbjct: 339 GEVQR 343


>gi|227872151|ref|ZP_03990521.1| Fe-S-cluster redox protein [Oribacterium sinus F0268]
 gi|227842009|gb|EEJ52269.1| Fe-S-cluster redox protein [Oribacterium sinus F0268]
          Length = 359

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 190/372 (51%), Gaps = 34/372 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +++  +   EL+    + G P      R  Q++ W++ + + ++  M++I + +R  L +
Sbjct: 13  KNIRDLELIELKSLCKEEGFPA----YRAEQLFSWLHEKAVEEYTEMTNIPKAMREKLAE 68

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +S+  PE      S  D T K+L R          +IE+V++  +   + C+S+QVGC 
Sbjct: 69  GYSVALPEADLHLCSKMDDTEKFLFRLSD-----GHKIESVFMRYQHGNSACISTQVGCR 123

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L RN T  E+L Q+     L G                  +IS++V+M
Sbjct: 124 MGCAFCASTLDGLARNCTTGEMLGQIYAMEKLTGQ-----------------RISHVVLM 166

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           G GEPL N++ V + L I SD  G + S R ITLST G VP I  + +E  G+ LA+SLH
Sbjct: 167 GSGEPLDNYEEVTRFLRIISDEKGKNLSIRNITLSTCGLVPRIYDLAKENYGITLALSLH 226

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++ R  ++PI  +Y L  ++ A + Y   +   R++FEY ++ G+ND   D   L  
Sbjct: 227 APTDEQRRKIMPIANRYSLSEIMPAVKEYFKKTGR-RVSFEYALVLGVNDGEEDRKALAD 285

Query: 305 ILKG-----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           +LKG      P  +NLIP NP     +   D+K +  F E +++ G +  +R   G DI 
Sbjct: 286 LLKGEKGEHFPCHVNLIPVNPIKERTFAPPDRKRVYAFQEYLQKRGITCTVRREMGADIA 345

Query: 360 AACGQLKSLSKR 371
            ACGQL+    +
Sbjct: 346 GACGQLRRDGTK 357


>gi|332799418|ref|YP_004460917.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
           sp. Re1]
 gi|332697153|gb|AEE91610.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
           sp. Re1]
          Length = 343

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 126/365 (34%), Positives = 201/365 (55%), Gaps = 30/365 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K +L  +   ++EE + ++G P      R  QI+KWIY +G  +F+ M+D+S+++   
Sbjct: 1   MEKTNLKSLTLTQMEEFIKQLGEPV----YRAKQIFKWIY-KGQTEFEKMTDLSKDLIAR 55

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L     +   +I  +  S  D T K++             +E+V +      T C+SSQV
Sbjct: 56  LKDCAYVGKIDIYKKYESEIDETTKYVFALED-----GQMVESVKMKYSFGTTACISSQV 110

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GCS+ C+FC +    +VRNL   E+  +V+                         KIS +
Sbjct: 111 GCSMGCAFCASTEGGMVRNLAWWEMADEVIAIEK-----------------DSNVKISRV 153

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL N+D + + L I +  +  + S RR+T+ST G VP I R+ EE + + LA+
Sbjct: 154 VVMGSGEPLLNYDELIQFLRILNSPLAFNISYRRLTVSTCGIVPKIIRLAEEGLPITLAV 213

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA ++D+R+ L+PIN +YP+  L+DAC++Y   +   RITFEY+++  IND+ + A  
Sbjct: 214 SLHAPNDDIRSSLMPINERYPILQLLDACKYYIMKTKR-RITFEYILISDINDTEQCACE 272

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LK +   +NLIP NP  G ++  SD   I  F + +  +G S+ +R   G DI AA
Sbjct: 273 LSNLLKDLLCHVNLIPLNPVEGKKFKKSDDSRIRKFEQILLNNGISATVRREMGSDINAA 332

Query: 362 CGQLK 366
           CGQL+
Sbjct: 333 CGQLR 337


>gi|320451516|ref|YP_004203612.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01]
 gi|320151685|gb|ADW23063.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01]
          Length = 349

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 142/367 (38%), Positives = 197/367 (53%), Gaps = 32/367 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S++ ++ EEL                R +QI  W+Y RG  DF  M+D+ +  R  L  
Sbjct: 2   RSILELLPEEL-----------PGEGYRKAQIAHWLYARGAMDFSEMTDLPKGFREALAG 50

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            + I    +V+   S DG+ K+L            + E VY+P ++R T+C+SS VGC  
Sbjct: 51  EWRISEFALVEAYPSRDGSVKYLFTLLD-----GKKTEAVYMPYENRKTVCLSSMVGCPA 105

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG     RNLTA EIL Q+L      G  P              R I N+V+MG
Sbjct: 106 GCTFCATGALGFGRNLTAAEILSQLLAIAHHQGISP--------------RDIRNVVLMG 151

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEPL N  NV K++       GL+ S RRITLST G    I R+ EE +GV LA+SLHA
Sbjct: 152 MGEPLLNLGNVLKAIRTMLHPKGLAMSPRRITLSTVGIPKGIHRLAEEDLGVRLALSLHA 211

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R  ++P   +Y +  +++A RHY   +   R+TFEY +LKG+ND P  A  L K+
Sbjct: 212 PDDETRRKIIPTAHRYSVGEILEAVRHYYARTKR-RVTFEYTLLKGLNDHPWQARLLAKL 270

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKGI A +NLIPFNPW G     + +  I+ F+E ++R G  + IR  RG D+ AACGQL
Sbjct: 271 LKGISAHVNLIPFNPWEGAPVEGTPKAGILAFAEELRRLGIPTSIRFSRGQDVGAACGQL 330

Query: 366 KSLSKRI 372
              + + 
Sbjct: 331 ALKAPKA 337


>gi|225028096|ref|ZP_03717288.1| hypothetical protein EUBHAL_02366 [Eubacterium hallii DSM 3353]
 gi|224954566|gb|EEG35775.1| hypothetical protein EUBHAL_02366 [Eubacterium hallii DSM 3353]
          Length = 349

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 116/365 (31%), Positives = 187/365 (51%), Gaps = 29/365 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQ 66
            L  M  EEL + ++++G      + R  QI+ W++ + +R  + M ++  +    L  +
Sbjct: 6   DLKSMTLEELTDCVMELG----EKKFRAKQIYGWLHQKLVRSPEEMKNVPAKCIEKLLKE 61

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           H      E+   +   DGT+K+L       +     +E+V +  K   ++C+SSQ GC +
Sbjct: 62  HPFYGVEEVEHYESKIDGTQKFLFSLHDGNM-----VESVLMKYKHGNSVCISSQAGCRM 116

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +    L RNL   E+L Q+   +   G+                 ++S++V+MG
Sbjct: 117 GCRFCASTLLGLSRNLYPSEMLDQIYAIQKATGE-----------------RVSHLVVMG 159

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP  NF+++ + + +     GL+ S R IT+ST G VP I    +    V LAISLH+
Sbjct: 160 TGEPFDNFESLCRMIELLCSPDGLNISHRNITVSTCGIVPKIYEFADRNPQVTLAISLHS 219

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +R  L+PI  KY ++ L++A R+Y   +  RRITFEY ++KG+ND    A  LI  
Sbjct: 220 PNDTMRRELMPIANKYSMDELMEAARYY-TRTTGRRITFEYSLVKGVNDKKEHAQELISR 278

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +KG+   INLIP NP    ++  S Q ++  F   ++R      +R   G DI AACGQL
Sbjct: 279 VKGMNCHINLIPVNPIKERDFEQSTQNNVAAFKHILERQHIQVTVRREMGRDIQAACGQL 338

Query: 366 KSLSK 370
           +   K
Sbjct: 339 RKSYK 343


>gi|332981566|ref|YP_004463007.1| 23S rRNA m(2)A-2503 methyltransferase [Mahella australiensis 50-1
           BON]
 gi|332699244|gb|AEE96185.1| 23S rRNA m(2)A-2503 methyltransferase [Mahella australiensis 50-1
           BON]
          Length = 344

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 197/366 (53%), Gaps = 30/366 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +  +L  M  +++ + + ++G P      R  QI+ W+Y +G+ D   MSD+  + R  L
Sbjct: 3   QPIALKDMSMDDMSKLVQQLGQPA----YRAQQIFSWVY-KGVDDIDEMSDLPADFRKRL 57

Query: 65  NQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +        I   + S DG+  K+L       I     IE+V +  +   ++CVSSQVG
Sbjct: 58  KERCYTDSCRIYKRQQSEDGSAIKYLFLLKDGNI-----IESVLMLYEYGNSVCVSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +  + + RNLT  E++ Q+L  +                   VGRKIS++V
Sbjct: 113 CRMGCAFCASTIKGIKRNLTKGEMVDQILRIQQ-----------------DVGRKISHVV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG GEPL N++     + +  +  GL+ S R +TLST G VP I  + +E + + LA+S
Sbjct: 156 LMGSGEPLDNYEQSIAFMRLLHEPKGLNISYRNMTLSTCGLVPRIYDLAKEGMPITLAVS 215

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++D+R  L+P+++ Y ++ +I AC +Y   +   R+TFEY+MLK IND    A  L
Sbjct: 216 LHAPNDDIRRQLIPMSKVYSIDDIIKACNYYIEKTGR-RVTFEYIMLKDINDRVEHAYML 274

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LKG+   +NLIPFN   GCE+  S QK I  F   + + G    IR   G DI AAC
Sbjct: 275 ADVLKGMICHVNLIPFNNVEGCEFQPSSQKQIEHFYGILNKKGIPVSIRRRLGTDIDAAC 334

Query: 363 GQLKSL 368
           GQL+  
Sbjct: 335 GQLRRR 340


>gi|313113578|ref|ZP_07799166.1| radical SAM enzyme, Cfr family [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624093|gb|EFQ07460.1| radical SAM enzyme, Cfr family [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 346

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 200/363 (55%), Gaps = 28/363 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  +      EL   L  +G P      R  QI+ W++ + + +F  M+D  + +   L
Sbjct: 3   QKRCISSFTLAELTAELKAMGQPG----FRAKQIFHWVHQKLVTEFSAMTDQPKTLLAKL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + F I  P+I   + + DGT K+LLR           IETV +      T+CVS+QVGC
Sbjct: 59  EESFYIAAPKIERRQEAKDGTVKYLLRM-----ADGNCIETVVMRYHYGNTVCVSTQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +     VR+L A EI  ++  A+  +G+                 +IS+IV+
Sbjct: 114 RMGCRFCASTQAGRVRDLEAGEICSEIYTAQKDIGE-----------------RISHIVL 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEPL NFD V K L   +   G++   R I+LST G VP I ++ E+ + + L++SL
Sbjct: 157 MGIGEPLDNFDEVMKFLENITSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSVSL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N++R+ ++P+N  YP+E+L+ A R Y   +  RR++FEY M++G+NDS   A  L 
Sbjct: 217 HAPNNEIRSGMMPVNDAYPVEVLMQAVRRYQD-TTGRRVSFEYSMVRGVNDSDACARQLA 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +++G+ A +NLIP NP  G  Y  +D  ++  F + ++  G ++ +R   G +I AACG
Sbjct: 276 NLIRGMGAHVNLIPINPVDGSPYSATDAANVHRFQQKLESLGVNATVRRRLGSEISAACG 335

Query: 364 QLK 366
           QL+
Sbjct: 336 QLR 338


>gi|332702335|ref|ZP_08422423.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552484|gb|EGJ49528.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 362

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 205/379 (54%), Gaps = 21/379 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M+   K +L+ +  +EL   + ++    R  R R  Q+W+W++ +G+ DF+ MS++S+ +
Sbjct: 1   MDT--KINLLDLSLDELRGFIAEL----REPRFRAEQVWQWMWQKGVSDFEEMSNVSKAL 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +H  I  P I   + S DGT K+LLR     +     IETV +P ++  T C+S+
Sbjct: 55  RGKLAEHAVIRPPTIDTVRESDDGTVKFLLRLADGAL-----IETVLLPSRTHYTQCLST 109

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C+FC TGT  L RNL   EI  QVLL R  L      +  E        R + 
Sbjct: 110 QVGCAMGCAFCSTGTMGLARNLAHSEICGQVLLGRKWLEQKNSQDKGE--------RSLR 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V MGMGEPL N+D + KSL    D     FS RR+T+ST+G    +  +       LA
Sbjct: 162 NLVFMGMGEPLMNYDTLVKSLHTLRDDKAFGFSSRRMTVSTAGVPGRMTELVTSGLARLA 221

Query: 241 ISLHAVSNDLRNILVPIN-RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           +SLHA + +LR  ++P   R +PL  L++  +  P L    R TFEY+++ G+ND+ + A
Sbjct: 222 VSLHAPTQELRERIMPRAARMHPLPALMEELKKLP-LRPQERTTFEYILIGGLNDTQQHA 280

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+++L  + AKINLI  NP     +     + I  F + ++  G  + +R  +G DI 
Sbjct: 281 RELVRLLSHVRAKINLIACNPAKDSPFAAPTMEAIEAFQQVLRDKGLVAMLRKSKGQDIE 340

Query: 360 AACGQLKSLSKRIPKVPRQ 378
           AACGQL +  ++      Q
Sbjct: 341 AACGQLVTQKQKEQARTEQ 359


>gi|150026118|ref|YP_001296944.1| hypothetical protein FP2080 [Flavobacterium psychrophilum JIP02/86]
 gi|205829761|sp|A6H1B8|RLMN_FLAPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|149772659|emb|CAL44142.1| Protein of unknown function YloN [Flavobacterium psychrophilum
           JIP02/86]
          Length = 347

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 205/368 (55%), Gaps = 24/368 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            ++K+ +  + +++L +      +  +    R +Q+++W++ +G   F+ M+++S+  R 
Sbjct: 2   QIEKKDIRALSKDQLRDFF----VINKDKAFRGNQVYEWLWSKGAHSFEDMTNVSKGTRQ 57

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +L ++F I + ++   + S DGT K  +R     I     +E+V IP ++R T CVSSQV
Sbjct: 58  MLVENFVINHIKVDTMQRSSDGTVKNAVRLHDGLI-----VESVLIPTETRTTACVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GCSL C+FC T   K +RNL   EI  QVL              I+        R +SNI
Sbjct: 113 GCSLDCNFCATARLKRMRNLEPGEIYDQVLA-------------IDRESKLYFNRPLSNI 159

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N++NV K++ + + S GL  S +RIT+STSG    I ++ + E+   LA+
Sbjct: 160 VFMGMGEPLMNYNNVIKAIDMITSSEGLGMSPKRITVSTSGVSKMIKKMADDEVKFKLAV 219

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+   ++RN ++P  + +PL  L +A   Y       +IT+EYV+ KGIND+      
Sbjct: 220 SLHSAVEEIRNKIMPFTKSFPLPELREAL-QYWYHKTKSKITYEYVVWKGINDNKESVDA 278

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+K  K +P K+NLI +NP    E+  +  + I  + + ++ +G  + +R  RG DI AA
Sbjct: 279 LVKFCKHVPCKVNLIEYNPIDDGEFQQASPESINAYIKALEANGIIAKVRHSRGKDIDAA 338

Query: 362 CGQLKSLS 369
           CGQL +  
Sbjct: 339 CGQLANKE 346


>gi|157164532|ref|YP_001467818.1| radical SAM protein [Campylobacter concisus 13826]
 gi|205829689|sp|A7ZGB0|RLMN_CAMC1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|112801745|gb|EAT99089.1| radical SAM enzyme, Cfr family [Campylobacter concisus 13826]
          Length = 381

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 142/381 (37%), Positives = 217/381 (56%), Gaps = 42/381 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+ +  EEL+E +            R +QI++W+Y +   +F  M ++ +++R  L +
Sbjct: 2   KNLLDLSIEELKELV--------SPSFRATQIYEWVYKKNATEFSQMLNLPKDMRQDLAE 53

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
            F +   + V  + S DG+ K+L           ++IE+V +P K              R
Sbjct: 54  KFYLDPLKCVKFEQSSDGSIKYLFELKD-----GLKIESVLLPMKEEISDEDGKISRHAR 108

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC + C+FC T    LVRNLTA EI+ Q+L  +                  
Sbjct: 109 YTICVSSQVGCKMGCAFCLTAKGGLVRNLTAGEIVGQILWIKREN--------------K 154

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  N+V MGMGEPL N  NV K++ I + + GL+ S RR T+STSG    I ++GE
Sbjct: 155 IPYERRINVVYMGMGEPLDNLTNVSKAIKILALNEGLAISPRRQTVSTSGLGSQIKKLGE 214

Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
            ++GV+LAISLHAV+N+LR+ L+PIN+ Y +E ++DA R +P +   +R+ FEY+++K +
Sbjct: 215 MDLGVLLAISLHAVTNELRSRLMPINKAYNIEAVMDAVRGFP-IDMRKRVMFEYLVIKDL 273

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           NDS  DA  L+K+L GI AK+NLI FNP  G E+   +   ++ F E ++  G +  IR 
Sbjct: 274 NDSVSDAKKLVKLLHGIKAKVNLIYFNPHEGSEFGRPELASMLKFQEYLRDHGVTCTIRQ 333

Query: 353 PRGLDILAACGQLKSLSKRIP 373
            +GLDI AACGQLK  ++   
Sbjct: 334 SKGLDISAACGQLKQRNENPK 354


>gi|89890089|ref|ZP_01201600.1| radical SAM domain protein [Flavobacteria bacterium BBFL7]
 gi|89518362|gb|EAS21018.1| radical SAM domain protein [Flavobacteria bacterium BBFL7]
          Length = 346

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 198/365 (54%), Gaps = 24/365 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +    +++L E  +  G        R +Q+++W++ +G   F  M+++S++ R  L 
Sbjct: 5   KKDIRSYTQDQLREYFVDQG----QQAFRGNQVYEWLWKKGAHHFDDMTNLSKDTRAFLQ 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I +  +   + S DGT K  ++         + +E+V IP  +R T CVSSQVGCS
Sbjct: 61  EHFVINHIRVDHMQRSKDGTIKNAVKLHD-----GLTVESVMIPTPTRTTACVSSQVGCS 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T   K +RNL  +EI  QV+              I+        R +SNIV M
Sbjct: 116 LNCEFCATARLKRMRNLNPDEIYDQVVA-------------IDQQSKNYHNRPLSNIVFM 162

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
           GMGEPL N+ NV KS+   +   GL  S +RITLSTSG    + ++ ++     LA+SLH
Sbjct: 163 GMGEPLMNYKNVIKSIDKITGDDGLGMSPKRITLSTSGVPKMMKKLADDRPRFNLALSLH 222

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  ++ R  ++P N ++PLE + +A R++   +   R+T+EYV+ KGIND+  D   LI+
Sbjct: 223 SAIDEKRVKIMPFNEQFPLEDIKEALRYWYDKT-GTRVTYEYVVWKGINDTKEDIDALIE 281

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             K IP K+N+I +N      +  + ++ +  +   + R G++  +R  RG DI AACGQ
Sbjct: 282 FCKVIPCKVNIIEYNSIDDARFEQASKQAVDAYERELNRYGFTVNVRRSRGKDIDAACGQ 341

Query: 365 LKSLS 369
           L +  
Sbjct: 342 LANKE 346


>gi|159025948|emb|CAO86242.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 337

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 126/360 (35%), Positives = 185/360 (51%), Gaps = 31/360 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+    EEL + +   G P      R  Q+ +W+Y +G+     +S   QE R  L   +
Sbjct: 3   LLAKSLEELTDWVKDQGQPA----YRGKQLHQWLYEKGVHSLADISVFPQEWRSKLAD-Y 57

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I    I    ++ D TRK+LL+     I     IE V IP + R T+CVSSQVGC + C
Sbjct: 58  PIGRSLIHYRSVAPDRTRKYLLKLADGLI-----IEAVGIPSEKRLTVCVSSQVGCPMAC 112

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNL A EI+ QVL  +                     +++S++V MGMG
Sbjct: 113 DFCATGKGGFTRNLKAYEIVDQVLTVQE-----------------DFQQRVSHVVFMGMG 155

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EPL N   V  ++   +  +G    +R +T+ST G    I ++ E  + V  A+SLHA +
Sbjct: 156 EPLLNIPEVVTAIHSLNQDVG--IGQRCLTISTVGLPHKIKQLAEHNLQVTFAVSLHASN 213

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             +R  L+P    YPL  LI  C+ Y  ++   R+TFEY++L G+ND P  A  L+K++K
Sbjct: 214 QQVRAKLIPSADHYPLTNLIQDCQEYVQITGR-RVTFEYILLAGVNDLPEHARELVKLVK 272

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP    +Y   D+K I  F   +++   +  +R  RGL   AACGQL+S
Sbjct: 273 GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAVTVRYSRGLAADAACGQLRS 332


>gi|292670255|ref|ZP_06603681.1| cfr family radical SAM enzyme [Selenomonas noxia ATCC 43541]
 gi|292648207|gb|EFF66179.1| cfr family radical SAM enzyme [Selenomonas noxia ATCC 43541]
          Length = 346

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 131/363 (36%), Positives = 193/363 (53%), Gaps = 26/363 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++ G  +E L  +L +  IP    R R  QI +W+Y RG      M ++ +E+R  L + 
Sbjct: 2   NIFGWTKEALAASLREHQIP----RFRADQIVRWMYQRGAVSLHAMDNLPKELRARLAEI 57

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           FSI  P ++    S DG T K L  F           ETV +      ++CVS+Q GC +
Sbjct: 58  FSIERPAVISRLHSADGATIKLLYEF-----ADGQTAETVLMRHAYGNSVCVSTQAGCRM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L RNLTA EI  QV+                   + + G  +  IV+MG
Sbjct: 113 GCAFCASTLNGLQRNLTAGEIAAQVIGIADF--------------LRAEGGHVDTIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N+DNV  +L +  +   +  S R ITLSTSG VP I R+ EE I + L+ISLHA
Sbjct: 159 SGEPLENYDNVVAALRLLHEDYTIGLSYRGITLSTSGIVPGIERLAEEGIPISLSISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + +LR+ ++P+NR YPL  ++ A   Y   +   R+T+EY++++ +ND PRDA  L K+
Sbjct: 219 PTEELRSEIMPVNRMYPLADVLRAACFYAERTKR-RVTYEYILIRDVNDGPRDAEQLAKL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G  A +NLIP NP         D+  I  F + + +   ++ +R   G DI AACGQL
Sbjct: 278 LRGQLASVNLIPINPVAERSLFRPDKAAIRRFQKILAQRHITATLRREMGTDIQAACGQL 337

Query: 366 KSL 368
           ++ 
Sbjct: 338 RNR 340


>gi|298208115|ref|YP_003716294.1| hypothetical protein CA2559_07736 [Croceibacter atlanticus
           HTCC2559]
 gi|83848036|gb|EAP85906.1| hypothetical protein CA2559_07736 [Croceibacter atlanticus
           HTCC2559]
          Length = 346

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 128/365 (35%), Positives = 200/365 (54%), Gaps = 24/365 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +  + +E+L +  +  G        R +Q+++W++ +G   F+ M++IS+E R +L 
Sbjct: 5   KKDIRALSKEQLRDFFVSEGDKA----FRGNQVYEWLWNKGAHTFEEMTNISKETRDMLE 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F I +  +   + S DGT K  ++         + +E+V IP  SR T CVSSQVGCS
Sbjct: 61  ANFVINHILVDQMQRSSDGTIKNAVKLHD-----GLTVESVLIPTASRTTACVSSQVGCS 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T   K +RNL  +EI  QV+        +               R +SNIV M
Sbjct: 116 LDCKFCATSRLKRMRNLNPDEIYDQVVAIDRESRLY-------------HDRPLSNIVFM 162

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
           GMGEPL N++NV KS+   +   GL  S RRIT+STSG    I ++  EE+   LA+SLH
Sbjct: 163 GMGEPLMNYNNVLKSIEKITSEDGLGMSPRRITVSTSGVPKIIKKMADEEVKFNLAVSLH 222

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  +++R  ++P N  +PL+ L ++  ++   +  + IT+EYV+ K IND   D   L+K
Sbjct: 223 SAIDEVRTKIMPFNEHFPLKDLRESLEYWYAKTGKQ-ITYEYVVWKDINDRTEDIDALVK 281

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             K +P+K+NLI +NP    E+  +    I  +   ++R+  +  +R  RG DI AACGQ
Sbjct: 282 FCKYVPSKVNLIEYNPIDDGEFQQAPDAAINAYVNALERNNITVTVRRSRGKDIDAACGQ 341

Query: 365 LKSLS 369
           L + S
Sbjct: 342 LANKS 346


>gi|147678122|ref|YP_001212337.1| Fe-S-cluster redox protein [Pelotomaculum thermopropionicum SI]
 gi|205829798|sp|A5D1B6|RLMN_PELTS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146274219|dbj|BAF59968.1| predicted Fe-S-cluster redox enzyme [Pelotomaculum
           thermopropionicum SI]
          Length = 368

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 191/368 (51%), Gaps = 32/368 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            + ++  +    LE  L  +G      R R  Q+  W++ +G   F+ M+++   +R  L
Sbjct: 17  DRINVKDLTLAGLERLLTGMGAE----RYRAGQVAIWVFQKGAESFREMTNLPANLREKL 72

Query: 65  NQHFSIIYPEIVDEKISC--DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +    I  PEI+ +K+S   D   K+L   P         +E+V++      ++CVS+Q 
Sbjct: 73  DAAAVISRPEILAKKVSSKKDA-VKYLFGLPD-----GQAVESVFMKHAYGNSVCVSTQA 126

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    L RNL+  EI  QVL  R   G+                 +IS++
Sbjct: 127 GCRMGCRFCASALGGLTRNLSPGEIYDQVLGIRRDTGE-----------------RISSV 169

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL N+D     +   +   GL    R IT+ST G VP I R+  E + + LA+
Sbjct: 170 VLMGSGEPLDNYDATLTFIKNVTAPYGLHIGCRHITVSTCGLVPGIRRLAREKLALTLAV 229

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA ++ LR+ILVP+NRKYPL  L+ ACR Y   +   R+TFEY +L G+ND    A  
Sbjct: 230 SLHAPNDRLRDILVPVNRKYPLTELMAACRDYAQETGR-RVTFEYALLAGVNDRKEHAEE 288

Query: 302 LIKILKG-IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           L+++LKG +P  +NLIP NP P        +  +  F + ++R G +  +R   G DI A
Sbjct: 289 LVRLLKGKMPCHVNLIPANPVPERGVKTPSRLQVELFKKILERHGLAVTVRRGLGADIDA 348

Query: 361 ACGQLKSL 368
           ACGQL+  
Sbjct: 349 ACGQLRRK 356


>gi|148244511|ref|YP_001219205.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA]
 gi|205829924|sp|A5CX33|RLMN_VESOH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146326338|dbj|BAF61481.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA]
          Length = 356

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/373 (40%), Positives = 211/373 (56%), Gaps = 24/373 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K++L+ + ++ L +  + +G        RT QI +WIY     DF  M + S+ +R  
Sbjct: 1   MNKQNLLSLNQDALNDFFVCLG----EKHYRTKQIMQWIYKVHEFDFDKMFNFSKSLREE 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           LN+   I +P++V +K + D   KW+L            IE VYIPEK RGTLC+SSQVG
Sbjct: 57  LNKIACIEFPKVVKQKFALDKVIKWVLALSEDNY-----IEMVYIPEKDRGTLCISSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C+FC TG Q   +NLT  EI+ QVL+A                 + S  ++ISNIV
Sbjct: 112 CALACTFCSTGMQGFNKNLTTAEIIAQVLIANKY--------------LNSKTKRISNIV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N   V  +  +  D +    S+R++T+STSG VP+I R+ +   V LAISL
Sbjct: 158 FMGMGEPLLNEQAVYNACDLLLDDLAFGLSRRKVTISTSGIVPSILRMSKRTPVSLAISL 217

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNL 302
           HA +N LR+ LVP+N+KY +E L+ AC+ Y       R I FEYVMLK +NDS   A  L
Sbjct: 218 HAPNNQLRDKLVPVNQKYSIEELLKACKVYLNAGTQERHILFEYVMLKDVNDSTEHANKL 277

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+LK I AK+NLIPFN +   +Y  S+ + I  F + + + G  + +R  RG DI  AC
Sbjct: 278 AKLLKAISAKVNLIPFNSFERTQYQSSNAQTIEKFQDILYQQGIRTMMRRTRGEDIDGAC 337

Query: 363 GQLKSLSKRIPKV 375
           GQL        K 
Sbjct: 338 GQLAGKVLNKTKK 350


>gi|37521648|ref|NP_925025.1| hypothetical protein gll2079 [Gloeobacter violaceus PCC 7421]
 gi|81709852|sp|Q7NIV3|RLMN_GLOVI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|35212646|dbj|BAC90020.1| gll2079 [Gloeobacter violaceus PCC 7421]
          Length = 348

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 130/364 (35%), Positives = 191/364 (52%), Gaps = 31/364 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+G   EEL   +   G P      R  Q+ +W+Y RG+R    ++D  +  R  ++ 
Sbjct: 3   TPLLGQSAEELRIWVESQGQPA----YRAQQLHRWLYQRGVRSLMEITDWPKAWREQVHS 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +   ++V +  + DGT K+LL            +ETV IP   R T+CVSSQVGC +
Sbjct: 59  -VPVGRSQVVRQSAAADGTIKYLL-----AGADGETVETVGIPAAERLTVCVSSQVGCPM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG     RNL   EI+ QVL  +                    GR++S++V MG
Sbjct: 113 ACRFCATGQSGFARNLGVHEIVDQVLTVQE-----------------GFGRRVSHVVFMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
           MGEPL N   V ++L + +    +   +R+IT+ST G    I R+G  ++ + LA+SLHA
Sbjct: 156 MGEPLLNLGAVVQALRVLNGD--IGIGQRQITVSTVGVPGQIRRLGTYKLQITLAVSLHA 213

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + DLR  L+P  + YP+E L++ CR Y   +N  R++FEY +L GIND P  A  L  I
Sbjct: 214 PNQDLRLKLIPTAQHYPIEELLEDCRDYVETTNR-RVSFEYTLLAGINDEPHHARELAAI 272

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G  + +NLIP+NP  G EY    +  +  F   + R   ++ +R  RGL+  AACGQL
Sbjct: 273 LRGFQSHVNLIPYNPIEGVEYERPGEARVRAFERELVRHKIAASVRHTRGLEEAAACGQL 332

Query: 366 KSLS 369
           +  S
Sbjct: 333 RRRS 336


>gi|312622709|ref|YP_004024322.1| radical sam enzyme, cfr family [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203176|gb|ADQ46503.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 341

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 123/365 (33%), Positives = 190/365 (52%), Gaps = 31/365 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +  +  +EL+  L  +G        R +QI++W+Y +   D    +++  E+R  + 
Sbjct: 2   KRFIKDLTIDELKIWLESVG----EKPFRATQIFEWLYKKNATDVMQFTNLPLELRKKIY 57

Query: 66  QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             F +   +I+  +   DG + K+L     +       IE+V++P +    +CVS+QVGC
Sbjct: 58  DEFLMNSLQILQHQ--SDGESIKFLFELCDKN-----GIESVFLPYRYGNAVCVSTQVGC 110

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +     VRNLT  E++ Q++ A +  G                 ++I+N+V+
Sbjct: 111 KMNCGFCASAIGGFVRNLTPGEMVDQIISAENFTG-----------------KRITNVVL 153

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MG GEP  N +NV K + I +   G +   R IT+ST G V  I R+ +    V LAISL
Sbjct: 154 MGSGEPFDNIENVFKFIEIINSKDGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISL 213

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N LR+ LVPIN+KYP+E ++ A  +Y   +N  R+TFEY ++ G+NDS   A  L 
Sbjct: 214 HAPNNSLRDKLVPINKKYPIEDIMKAVDYYIQKTNR-RVTFEYALIDGVNDSIDCAQELG 272

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +ILKG    +NLIP NP     +    ++ I  F E +K    +  IR   G  I AACG
Sbjct: 273 RILKGKLVHVNLIPVNPVEEKGFRRPSKEKIKVFFETLKSYQINVTIRRELGSSISAACG 332

Query: 364 QLKSL 368
           QL+  
Sbjct: 333 QLRKR 337


>gi|254415410|ref|ZP_05029171.1| radical SAM enzyme, Cfr family [Microcoleus chthonoplastes PCC
           7420]
 gi|196177885|gb|EDX72888.1| radical SAM enzyme, Cfr family [Microcoleus chthonoplastes PCC
           7420]
          Length = 359

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 126/365 (34%), Positives = 185/365 (50%), Gaps = 31/365 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+G    EL + + + G P      R  Q+  WIY +G R    +S  S+  R  L 
Sbjct: 24  KTPLLGASLAELTQWVEQQGQPA----YRGRQLHNWIYQKGARRLSEISVFSKSWRQALV 79

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I    +     + D T K+LLR     I     IETV IP  +R T+CVSSQVGC 
Sbjct: 80  D-VPIGRSTLHYRSQAPDRTVKYLLRLADGNI-----IETVGIPTANRLTVCVSSQVGCP 133

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG     RNL   EI+ QVL  +                    G+++SN+V M
Sbjct: 134 MACDFCATGKGGFTRNLQPHEIVDQVLTVQE-----------------DFGQRVSNVVFM 176

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N + V  ++   +  +G+    R  T+ST G    I ++ E  + +  A+SLH
Sbjct: 177 GMGEPLLNLEGVLAAVRSLNQDIGIGM--RSQTISTVGIRDRIRQLAEHKLQLTFAVSLH 234

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +  LR  L+P  ++YPL  L+  CR Y  ++   R+TFEY++L G+ND P   + L +
Sbjct: 235 ASNQQLREQLIPSAKRYPLTDLLQECRDYVKITGR-RVTFEYILLAGLNDQPEHGIELAQ 293

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            L+G  + +NLIP+NP    +Y     + I  F E +K+   +  +R  RGL+  AACGQ
Sbjct: 294 HLRGFQSHVNLIPYNPISEVDYQRPSPRRIQAFVETLKQHNIAVSVRRSRGLEKDAACGQ 353

Query: 365 LKSLS 369
           L++ +
Sbjct: 354 LRAST 358


>gi|162447121|ref|YP_001620253.1| radical SAM superfamily Fe-S oxidoreductase [Acholeplasma laidlawii
           PG-8A]
 gi|205829657|sp|A9NEU7|RLMN_ACHLI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|161985228|gb|ABX80877.1| Fe-S-cluster redox enzyme, radical SAM superfamily [Acholeplasma
           laidlawii PG-8A]
          Length = 338

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 129/362 (35%), Positives = 206/362 (56%), Gaps = 28/362 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           +  +  EELEE +++ G      + R  QIW W+Y + I  F  M++I +++  LLN ++
Sbjct: 3   IYDLTYEELEEFIVENGY----KKFRADQIWNWLYKQKIEAFSEMNNIPEDIIKLLNDNY 58

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           +    E V +  S DGT K+L       +     IETV +      + CV++QVGC++ C
Sbjct: 59  TFAGLETVIKNTSADGTIKFLFDLKDANL-----IETVLMSHNYGMSACVTTQVGCNIGC 113

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
           SFC +G  K  R+LTA EI+ Q++ A                     G ++S+IV+MG+G
Sbjct: 114 SFCASGVLKKKRDLTAGEIVAQIIRAEK-----------------ESGVRVSSIVIMGIG 156

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EP  N+ N  K +SI +   GL+   R IT+STSG VP I       I V LA+SLHA +
Sbjct: 157 EPFDNYKNFVKFISIVNHPKGLAIGARHITVSTSGLVPKIKEFAHLGIQVNLAVSLHAPN 216

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           N++R+ L+ IN ++ +E ++DA ++Y  ++N  R+T EY+M++ +NDS   A+ L K+LK
Sbjct: 217 NEIRSKLMKINDRFKVEEVVDAIKYYIHVTNR-RVTIEYIMIQDLNDSVETAVELAKLLK 275

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G+   +NLIP+N     +Y  S  ++ + F + +K    ++ +R  +G DI AACGQL+S
Sbjct: 276 GMNVYVNLIPYNTVKEADYQRSSLENRLAFHKTLKEHKITAILRKEQGHDINAACGQLRS 335

Query: 368 LS 369
            +
Sbjct: 336 QN 337


>gi|260889579|ref|ZP_05900842.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254]
 gi|260860990|gb|EEX75490.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254]
          Length = 365

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 131/372 (35%), Positives = 204/372 (54%), Gaps = 26/372 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +N ++K  ++GM  E L++  ++IG+     +   SQ++ W++ + + DF   S+IS++ 
Sbjct: 11  INTIEKIDILGMDLESLQKKFVEIGL----KKFNASQVFDWLHNKLVFDFDEFSNISKKD 66

Query: 61  RHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           R +L + F +   E    ++S DG T K+L     R +     IE+V I  K+R TLCVS
Sbjct: 67  REILKERFYVAKLEFKTHQVSEDGDTEKFLFELKDRRL-----IESVLISHKNRHTLCVS 121

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ+GC + C FC T T    RNL+  EILLQ    +                +   G K+
Sbjct: 122 SQIGCLIGCDFCATATMTYERNLSISEILLQYYYVQKH--------------LLQRGEKL 167

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238
            N+V MGMGEP  N+D V  S+++ +   G +FSKR  T+STSG V  I R  E E  + 
Sbjct: 168 GNVVYMGMGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRFTENENQIN 227

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLH+V +D+R+ ++PIN+++ ++ L ++   Y   +   RITFEY+++  +N  P D
Sbjct: 228 LAISLHSVKDDVRSEIMPINKRWGVKQLKESLLEYQKQT-KNRITFEYILIDDLNCEPED 286

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L   L      +NLIP+NP  G  Y    ++    F + +K    +  +R  +G DI
Sbjct: 287 ARELAGFLNSFSCLVNLIPYNPVGGKPYKRPSKQKQREFYKLLKDKNVNVTLRETKGQDI 346

Query: 359 LAACGQLKSLSK 370
            AACGQLK+  +
Sbjct: 347 AAACGQLKAKKQ 358


>gi|242277580|ref|YP_002989709.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
           salexigens DSM 2638]
 gi|242120474|gb|ACS78170.1| radical SAM enzyme, Cfr family [Desulfovibrio salexigens DSM 2638]
          Length = 351

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 128/372 (34%), Positives = 202/372 (54%), Gaps = 23/372 (6%)

Query: 1   MNFLKK-ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
           M+   K   ++ +   ELE  +       +  R RT QIW+W++ +G+ DF  M+++++ 
Sbjct: 1   MSDNNKMIDILDLEYSELESFVS---QELKAPRFRTDQIWQWLWQKGVEDFDSMTNLAKN 57

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           +R  L     I +P++   + S DGT K LLR     +     +ETV IP + R T C+S
Sbjct: 58  LRDELKAKAVINHPQVDVVQTSKDGTIKLLLRLKDGAL-----VETVLIPMEGRYTQCLS 112

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +QVGC++ C+FC TG     RN++  E+L QVL  R  L +                  +
Sbjct: 113 TQVGCAMACTFCNTGLMGFERNMSMSEMLGQVLAGRKYLRENNLD-------------PL 159

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
            N+V MGMGEPL N DN+ ++L   ++  GLSF  RRIT+S+ GFV  +  +G+    + 
Sbjct: 160 KNLVFMGMGEPLLNLDNLIRTLRNLNNQDGLSFVPRRITVSSVGFVKQLEELGKTGLTLP 219

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           AISLHA + +LR  ++P   K  +E L+ A   +P L    ++T+EY++L G+NDS   A
Sbjct: 220 AISLHAPTQELREKIMPKAAKTHIEDLLAAMDRFP-LKPREKVTYEYLLLGGVNDSIEHA 278

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+K+L     K+NLI +NP     Y    ++ ++ F + +     ++ IR   G DI 
Sbjct: 279 KQLVKLLGHRRCKVNLIAYNPGDEPLYKAPTREKVLAFEKYLWDKKITATIRRSMGQDIK 338

Query: 360 AACGQLKSLSKR 371
           AACGQLK+  ++
Sbjct: 339 AACGQLKADQQK 350


>gi|269468799|gb|EEZ80403.1| hypothetical protein Sup05_0839 [uncultured SUP05 cluster
           bacterium]
          Length = 358

 Score =  398 bits (1022), Expect = e-109,   Method: Composition-based stats.
 Identities = 155/378 (41%), Positives = 210/378 (55%), Gaps = 26/378 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
              K++L G+ + EL+    K+G        RT Q  KWIY +   DF  M ++S+E+R 
Sbjct: 1   MQNKQNLFGLSQSELDTFFSKLG----EKPYRTKQFMKWIYHQHEFDFNQMLNLSKELRQ 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L Q  ++  P+I  +  + DG  KWL+       G    IE VYIPEK RGTLC+SSQV
Sbjct: 57  KLLQVATLELPKISSQNFASDGLIKWLIDL-----GSDNHIEMVYIPEKDRGTLCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GCSL C+FC TG Q   RNLT                +      I    +    +KISN+
Sbjct: 112 GCSLACTFCSTGMQGFNRNLTT--------------AEIIAQIIIANEHLSHENKKISNV 157

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N  +V  +  +  D +    S+R++T+STSG VP + R+ +   V LAIS
Sbjct: 158 VFMGMGEPLLNEKSVYSACDLLLDDLAFGLSRRKVTISTSGVVPALYRMAQTTPVSLAIS 217

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALN 301
           LHA  ++LR+ LVPIN+KYP+E L+ AC++Y       R I FEYVML G+ND+   A  
Sbjct: 218 LHAPDDELRDELVPINQKYPIEELMAACKNYLTSGTQERHILFEYVMLDGVNDTMEHAKK 277

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L K+L+GI AK+NLIPFNP+P  +Y  S    I  F + + ++G  +  R  RG D+  A
Sbjct: 278 LAKLLRGISAKVNLIPFNPFPKTQYKTSKAFTIKQFQDVLFQAGIRTMTRRTRGEDVDGA 337

Query: 362 CGQLKSLSKRIPKVPRQE 379
           CGQL      I K  R E
Sbjct: 338 CGQLAGKV--IDKTRRTE 353


>gi|126659786|ref|ZP_01730913.1| hypothetical protein CY0110_11217 [Cyanothece sp. CCY0110]
 gi|126618938|gb|EAZ89680.1| hypothetical protein CY0110_11217 [Cyanothece sp. CCY0110]
          Length = 342

 Score =  398 bits (1022), Expect = e-109,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 188/363 (51%), Gaps = 31/363 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   E+L + + + G P      R  Q+ +W+Y +G R    +S   +  R  L   +
Sbjct: 10  LLGKSVEQLTDWVKQQGQPA----YRGKQLHQWLYQKGARSLTDISVFPKTWREELKD-Y 64

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I    I    I+ D TRK+LL      I     IETV IP   R T+CVSSQVGC + C
Sbjct: 65  QIGRSNIYHRTIADDQTRKYLLSLGDELI-----IETVGIPTSKRLTVCVSSQVGCPMNC 119

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     R+LT  EI+ QVL  +                     +++S++V MGMG
Sbjct: 120 DFCATGKGGYTRDLTCAEIVDQVLTVQE-----------------DFQQRVSHVVFMGMG 162

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247
           EPL N   V K++ I +  +G    +R +T+ST G    I  +   ++ V  A+SLHA +
Sbjct: 163 EPLLNLKEVIKAVKILNQDVG--IGQRSLTISTVGIPKKILELAHRKLQVTFAVSLHAPN 220

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  + YPL  L+  CR Y  ++   R++FEY++L G+NDS   A+ L K LK
Sbjct: 221 QTLREQLIPSAKYYPLPKLLADCRKYVEITGR-RVSFEYILLGGVNDSSEQAIQLAKCLK 279

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP    +Y   D + I  F   ++    +  +R  RGL+  AACGQL++
Sbjct: 280 GFQSHVNLIPYNPIEEADYQRPDTQSINLFRNVLEEQKIAVSVRYSRGLEANAACGQLRA 339

Query: 368 LSK 370
           +S+
Sbjct: 340 MSQ 342


>gi|148655521|ref|YP_001275726.1| ribosomal RNA large subunit methyltransferase N [Roseiflexus sp.
           RS-1]
 gi|205829870|sp|A5UT23|RLMN_ROSS1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|148567631|gb|ABQ89776.1| radical SAM enzyme, Cfr family [Roseiflexus sp. RS-1]
          Length = 399

 Score =  398 bits (1022), Expect = e-109,   Method: Composition-based stats.
 Identities = 132/401 (32%), Positives = 196/401 (48%), Gaps = 43/401 (10%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN     +L  +   E+E  +   G P      R  QI++ +YV  +     M+D+   +
Sbjct: 2   MNQDTLPNLYDLSLAEMERLMTAWGQPA----YRARQIFRQLYVNLVDSPLAMTDLPLAL 57

Query: 61  RHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           R  L     +         ++  G TRK L R         V IE+V +    R T+CVS
Sbjct: 58  RERLVAETRLAPLAPEQVHVADQGLTRKALFRLE-----NGVLIESVLMIYPDRATVCVS 112

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--- 176
           +Q GC + C FC TGT  L+RNL+  +I+ QV+ A   +  F     I   + P      
Sbjct: 113 TQAGCGMGCVFCATGTLGLLRNLSPGDIVAQVVWAAREMRRFAAERCISPSLAPPDDDSW 172

Query: 177 -------------------RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
                               ++SNIV MGMGEP  N+D   +++ I  D  GL+   R +
Sbjct: 173 WTPDTLEDQGSSEARSISVSRLSNIVFMGMGEPFANYDRWWRAVEILHDPRGLNMGARSM 232

Query: 218 TLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           T+ST G +P I R+  E + + LAISLHA  + LR+ L+P+NR+YPL  L++A R Y   
Sbjct: 233 TVSTVGLIPGIRRLATETLPINLAISLHAPDDALRSALMPVNRRYPLAALLEATRDYLAA 292

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKG---------IPAKINLIPFNPWPGCEYL 327
           +   R++FEYV+L+G ND P  A  L  +L G             +NLIP+NP PG    
Sbjct: 293 TGR-RVSFEYVLLQGKNDEPEHAAKLAALLHGEAGTTPLPLHLVHVNLIPWNPVPGMPLG 351

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
            S+++ ++TF   ++  G +  +R  RG+ I AACGQL   
Sbjct: 352 RSERRRVLTFQRILRERGIACTVRVERGVSIAAACGQLAGA 392


>gi|229826168|ref|ZP_04452237.1| hypothetical protein GCWU000182_01540 [Abiotrophia defectiva ATCC
           49176]
 gi|229789038|gb|EEP25152.1| hypothetical protein GCWU000182_01540 [Abiotrophia defectiva ATCC
           49176]
          Length = 348

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 115/363 (31%), Positives = 195/363 (53%), Gaps = 29/363 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  ++ +  +EL   + ++G P      RT QI++WI+ + ++ +  M+++   +R+ L+
Sbjct: 5   RNDIVSLNFDELASLIKELGEPA----FRTKQIYEWIHKKLVKGYDEMTNVPLALRNKLS 60

Query: 66  QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +         V  K S  G T K++ +     +     IE+V +  +   ++C+SSQVGC
Sbjct: 61  ERLPFPELTEVARKDSASGDTSKFVFKLYDGYV-----IESVLMKYRYGNSVCISSQVGC 115

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L R L   E+L Q+   +   G+                 ++SN+V+
Sbjct: 116 RMGCTFCASTLLGLSRQLAPSEMLSQIYTIQRETGE-----------------RVSNVVV 158

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG GEPL NFDN+ K + + +D  GL+ S+R IT+ST G   NI R+ ++   + LAISL
Sbjct: 159 MGTGEPLDNFDNLIKFIELLTDEKGLNISQRNITVSTCGLTENIKRLADKKFAITLAISL 218

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++ R  ++PI  KY +  +++A  +Y   +   RI++EY ++ G ND+P +A  L 
Sbjct: 219 HAPTDEDRKRIMPIANKYTISEIMEATDYYFDKTGR-RISYEYSLIDGENDTPENAEKLA 277

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG    +NLIP NP     Y  S  K ++ F + ++  G +  IR   G DI AACG
Sbjct: 278 VLLKGKNCHVNLIPVNPIKERTYRSSTPKGVIRFKKILENRGINVTIREEMGQDIDAACG 337

Query: 364 QLK 366
           QL+
Sbjct: 338 QLR 340


>gi|312793230|ref|YP_004026153.1| radical sam enzyme, cfr family [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180370|gb|ADQ40540.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 344

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 188/365 (51%), Gaps = 31/365 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +  +  +E +  L  +G        R +Q+++W+Y +   D    +++  E+R  + 
Sbjct: 2   KRLIKDLTIDEFKIWLESVG----EKPFRATQVFEWLYKKNATDVMQFTNLPLELRKKIE 57

Query: 66  QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             F I   +I+  +   DG + K+L     +       +E+V++P +    +CVS+QVGC
Sbjct: 58  DEFLINSLQILKYQ--SDGESIKFLFELCDKN-----GVESVFLPYRYGNAICVSTQVGC 110

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +     VRNL+  E++ Q++ A +  G                 ++I+N+V+
Sbjct: 111 KMNCRFCASTIGGFVRNLSPGEMVDQIINAENFTG-----------------KRITNVVL 153

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MG GEP  N +NV K + I +   G +   R IT+ST G V  I R+ +    V LAISL
Sbjct: 154 MGSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISL 213

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N LR+ LVPIN+KYP+E ++ A  +Y   +N  R+TFEY ++ G+NDS   A  L 
Sbjct: 214 HAPNNSLRDKLVPINKKYPVEDIMKAVDYYIKRTNR-RVTFEYALIDGVNDSIECAQELG 272

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKG    +NLIP NP     +    ++ I  F E ++       IR   G  I AACG
Sbjct: 273 KMLKGKLVHVNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAACG 332

Query: 364 QLKSL 368
           QL+  
Sbjct: 333 QLRRR 337


>gi|301057688|ref|ZP_07198761.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
 gi|300448149|gb|EFK11841.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
          Length = 346

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 146/366 (39%), Positives = 207/366 (56%), Gaps = 25/366 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +    L G+   E+E+  +  G+       R  QI  WI  R  + F  M ++ +++R L
Sbjct: 1   MSLIDLKGLSAAEMEKWAVDNGMEA----YRGRQIRHWILTRFAKSFDEMDNLPKKLRSL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +   +     +    S DGTRK+L +           IETV IPE+   TLCVSSQVG
Sbjct: 57  LKEKAHLSSLRELKAIQSEDGTRKYLYQLQD-----GHSIETVLIPERDHLTLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TG Q  +RNL   EI+ QV+  +  L               +   ++ NIV
Sbjct: 112 CAMGCVFCATGKQGFIRNLKPGEIIEQVIRTKQSL---------------AFPDRLRNIV 156

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL N+D V K+L    D  G++FS R++TLST G VP I ++ ++I + LA+SL
Sbjct: 157 LMGMGEPLANYDAVIKALRNIIDPDGMNFSHRKVTLSTCGLVPEIKKLAKDITINLAVSL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           +   N+ R+ L+PINRKYPLE LI+AC  +P L N R ITFEY+++K  ND  RDA NL 
Sbjct: 217 NGADNETRSRLMPINRKYPLEALIEACSSFP-LPNRRMITFEYILIKDENDRDRDAHNLC 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L G+ AKINLI  N  P   +     + ++ F E +    +++ IR  +G DILAACG
Sbjct: 276 RLLSGLRAKINLIQLNAAPDSPFSIPSLEKVLHFQEILTDRHFTAIIRKSKGRDILAACG 335

Query: 364 QLKSLS 369
           QLK  S
Sbjct: 336 QLKGTS 341


>gi|163848485|ref|YP_001636529.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526414|ref|YP_002570885.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus sp.
           Y-400-fl]
 gi|205829697|sp|A9WFY6|RLMN_CHLAA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|163669774|gb|ABY36140.1| radical SAM enzyme, Cfr family [Chloroflexus aurantiacus J-10-fl]
 gi|222450293|gb|ACM54559.1| radical SAM enzyme, Cfr family [Chloroflexus sp. Y-400-fl]
          Length = 376

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 197/385 (51%), Gaps = 28/385 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +++  L      EL E L   G P      R  Q+++ +YV   R    M+D+   +R  
Sbjct: 5   MEQRCLYDYNLSELTELLQSWGEPA----FRARQLYRHLYVNLARQVDQMTDLPLALRSR 60

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L +            +I  +G TRK L R P   +     +ETV +    R T+CVS+Q 
Sbjct: 61  LAEI-PFSTLRCEQVQIGDNGMTRKALFRLPDGAV-----VETVLMVYPDRSTVCVSTQA 114

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L+RNL++ EI+ Q + A           ++  M +     ++SN+
Sbjct: 115 GCGMGCVFCATGQLGLLRNLSSGEIVAQAIWASQ---------ELRAMGMAGPTGRVSNL 165

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V MGMGEP  N+D   +++    D  G +   R +T+ST G V  I R+  E + + LAI
Sbjct: 166 VFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIERLANERLPINLAI 225

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  + LR+ L+P+NR+YP+  L+ A R+Y   +  RR++FEYV+L+G ND P  A+ 
Sbjct: 226 SLHAPDDALRSELMPVNRRYPIADLMAATRNYIAKT-RRRVSFEYVLLQGKNDHPHQAIA 284

Query: 302 LIKILKG------IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           L ++L+       +   +NLIP+NP PG     S+ + + TF + +   G    +R  RG
Sbjct: 285 LARLLRHSAPRGPLLFHVNLIPWNPVPGTPLGRSEWERVTTFQQILTDYGIPCTVRVERG 344

Query: 356 LDILAACGQLKSLSKRIPKVPRQEM 380
           ++I AACGQL            QE+
Sbjct: 345 VEIAAACGQLAGRHSVPLNTVEQEI 369


>gi|75909016|ref|YP_323312.1| ribosomal RNA large subunit methyltransferase N [Anabaena
           variabilis ATCC 29413]
 gi|123772627|sp|Q3M9B9|RLMN_ANAVT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|75702741|gb|ABA22417.1| 23S rRNA m(2)A-2503 methyltransferase [Anabaena variabilis ATCC
           29413]
          Length = 355

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 128/365 (35%), Positives = 187/365 (51%), Gaps = 31/365 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+G    EL   + + G P      R  Q+  WIY +G+R    +S  S++ R  +   
Sbjct: 21  PLLGASVTELTSWVQQQGQPA----YRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVAD- 75

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             I    I    ++ DGT K+LL+     I     +ETV IP   R T+CVS+QVGC + 
Sbjct: 76  VPIGRSTIHHRSVASDGTVKYLLQLSDGEI-----VETVGIPTDKRLTVCVSTQVGCPMA 130

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG     RNL   EI+ QVL  +                     +++S++V MGM
Sbjct: 131 CDFCATGKGGYKRNLERHEIVDQVLTVQE-----------------DFQQRVSHVVFMGM 173

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N +NV  +L   +  +G    +R +TLST G    I+++ E  + V LA+SLHA 
Sbjct: 174 GEPLLNTENVLAALRSLNQDVG--IGQRSLTLSTVGIRDRISQLAEHHLQVTLAVSLHAP 231

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +  LR  L+P  R Y +E L+  CR Y  ++   RI+FEY++L G+ND P  AL L K L
Sbjct: 232 NQALREQLIPSARSYHIEDLLAECREYVAITGR-RISFEYILLAGVNDLPEHALELSKHL 290

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +G    +NLIP+NP    +Y       I  F   +++   +  +R  RGL+  AACGQL+
Sbjct: 291 RGFQNHVNLIPYNPISEVDYKRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLR 350

Query: 367 SLSKR 371
           + + R
Sbjct: 351 TKTSR 355


>gi|168182583|ref|ZP_02617247.1| radical SAM enzyme, Cfr family [Clostridium botulinum Bf]
 gi|237795945|ref|YP_002863497.1| ribosomal RNA large subunit methyltransferase N [Clostridium
           botulinum Ba4 str. 657]
 gi|182674240|gb|EDT86201.1| radical SAM enzyme, Cfr family [Clostridium botulinum Bf]
 gi|229262363|gb|ACQ53396.1| radical SAM enzyme, Cfr family [Clostridium botulinum Ba4 str. 657]
          Length = 342

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 134/362 (37%), Positives = 204/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+++    EEL+E L+     +     R  Q++ WIY + I DF  M +I  + ++LL+ 
Sbjct: 2   ENILDFTLEELKEWLIS----KEEKGFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57

Query: 67  HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  P++V + +S D  T K+L  +    +     IE+V +  K   ++CVS+QVGC 
Sbjct: 58  NFYIGVPKVVKKLMSQDKNTYKFLFEYKDGNV-----IESVVMKYKHGNSICVSTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    ++RNLT+ EIL Q++ A+  +G+                 +ISN+V+M
Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           G GEPL NF NV K L + +    L+  +R ITLST G VP I  + ++   + LAISLH
Sbjct: 156 GSGEPLDNFKNVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  + LR  ++PI  KY ++ L++AC +Y   +N  RITFEY ++KG NDS ++A  L  
Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLST 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG    +NLIP N      Y  S  K+I +F   +K +G  + IR   G DI AACGQ
Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTSKNIESFGNILKENGIETTIRREMGADINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|312876958|ref|ZP_07736933.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796273|gb|EFR12627.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 344

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 187/365 (51%), Gaps = 31/365 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +  +  +E +  L  +G        R +Q+++W+Y +   D    +++  E+R  + 
Sbjct: 2   KRLIKDLTIDEFKIWLESVG----EKPFRATQVFEWLYKKNATDVMQFTNLPLELRKKIE 57

Query: 66  QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             F I    I+  +   DG + K+L     +       +E+V++P +    +CVS+QVGC
Sbjct: 58  DEFLINSLHILKYQ--SDGESIKFLFELCDKN-----GVESVFLPYRYGNAICVSTQVGC 110

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +     VRNL+  E++ Q++ A +  G                 ++I+N+V+
Sbjct: 111 KMNCRFCASTIGGFVRNLSPGEMVDQIINAENFTG-----------------KRITNVVL 153

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MG GEP  N +NV K + I +   G +   R IT+ST G V  I R+ +    V LAISL
Sbjct: 154 MGSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISL 213

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N LR+ LVPIN+KYP+E ++ A  +Y   +N  R+TFEY ++ G+NDS   A  L 
Sbjct: 214 HAPNNSLRDKLVPINKKYPVEDIMKAVDYYIKRTNR-RVTFEYALIDGVNDSIECAQELG 272

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKG    +NLIP NP     +    ++ I  F E ++       IR   G  I AACG
Sbjct: 273 KMLKGKLVHVNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAACG 332

Query: 364 QLKSL 368
           QL+  
Sbjct: 333 QLRRR 337


>gi|298245810|ref|ZP_06969616.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963]
 gi|297553291|gb|EFH87156.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963]
          Length = 388

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 134/367 (36%), Positives = 191/367 (52%), Gaps = 23/367 (6%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78
           E L   G        R  QI+ WIY + + +F  MS++  ++R  L +   I    +  E
Sbjct: 31  EWLAARG----EATFRAKQIYSWIYQQLVDNFAAMSNLPLKLRQRLEEEACIGPLVVRSE 86

Query: 79  KISCD-GTRKWLLRFPARCIGGPVEIETVYIPEK------SRGTLCVSSQVGCSLTCSFC 131
             S D  TRK LL      +     IE+V +         +R T+CVSSQ GC+  C+FC
Sbjct: 87  VSSKDDRTRKILLELADGKL-----IESVLMLYPPLGESSARATICVSSQAGCAFGCTFC 141

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG     R+L + EI+ QVL     L   P          P     I+NIV+MGMGEPL
Sbjct: 142 ATGQMGFDRHLQSGEIIAQVLHFARELRATPWSAAGLPGSTPID--HITNIVLMGMGEPL 199

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDL 250
            N+DNV ++L I + + G +   R +T+ST G VP I ++ +E + V LAISLHA +N+ 
Sbjct: 200 HNYDNVLQALRILNSAAGFNLGARHMTVSTVGLVPAIRKLSQEQLQVNLAISLHAPTNEA 259

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R+  +P+NRKYPLE L+ AC+ Y   +  + +TFEYV+L G+ND+P  A  L ++L  + 
Sbjct: 260 RSQTMPVNRKYPLEELLAACQDYIAATRRQ-VTFEYVLLAGVNDTPERAQQLAELLAPLK 318

Query: 311 --AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
             A +N IP N      Y       I  F   +   G S+ +R  RG DI AACGQL++ 
Sbjct: 319 QFAHVNCIPVNATS-AGYRPPGPDAIRAFRNILFERGISNSVRAERGDDIAAACGQLRTR 377

Query: 369 SKRIPKV 375
            +   K 
Sbjct: 378 FEDRRKA 384


>gi|301632243|ref|XP_002945200.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
           [Xenopus (Silurana) tropicalis]
          Length = 328

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 141/337 (41%), Positives = 189/337 (56%), Gaps = 21/337 (6%)

Query: 53  MSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112
           MSD+++ +R  L     I    ++ E+ S DGT KWL       +GG   +ETV+IPE  
Sbjct: 1   MSDLAKSLREKLQDRACITGLPVLTEQASADGTVKWLF-----DVGGGNAVETVFIPEDD 55

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           RGTLCVSSQ GC++ C FC TG Q   RNL+  EIL Q+  A   L    G         
Sbjct: 56  RGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHHLRQRLG--------- 106

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
            S  R ISN+VMMGMGEPL N+  +  +L +  D  G   S+RR+T+STSG VP + R+ 
Sbjct: 107 -SSERVISNVVMMGMGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMERLA 165

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
            +  V LA+SLHA ++ LR+ LV +NRKYPLE L+  C  Y   +    ITFEY ML G+
Sbjct: 166 LDCPVALAVSLHAPNDALRDHLVSLNRKYPLEELLQTCVRYLDHAPRDFITFEYCMLDGV 225

Query: 293 NDSPRDALNLIKILKG-----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347
           ND P  A  LI++++G     +  K NLIPFNP+P    + S  + +  F+  +  +G  
Sbjct: 226 NDQPEHAQQLIQLVRGHAQGKVWCKFNLIPFNPFPESGLVRSPPQRVSGFARLLSDAGIV 285

Query: 348 SPIRTPRGLDILAACGQLKSLSK-RIPKVPRQEMQIT 383
           + +R  RG DI AACGQL    K R     R   + T
Sbjct: 286 TTVRKTRGDDIDAACGQLAGEVKDRTRATERMARRRT 322


>gi|153005041|ref|YP_001379366.1| radical SAM protein [Anaeromyxobacter sp. Fw109-5]
 gi|205829648|sp|A7HCD6|RLMN_ANADF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|152028614|gb|ABS26382.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. Fw109-5]
          Length = 377

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 145/360 (40%), Positives = 210/360 (58%), Gaps = 19/360 (5%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +  + LE  +  +G        R  Q+ +W+  +G      ++D+ + +R  L +  
Sbjct: 16  LRSLPLDRLERLVAALG----ERPFRARQLHRWLQQKGAASLDELTDVPRALRAALAEAT 71

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           ++   E   E+ S DGT KW  R     +     +E+VY+PE  R TLCVSSQVGC++ C
Sbjct: 72  TLTTLERATEQRSVDGTIKWTWRTHDGKL-----VESVYMPEPDRRTLCVSSQVGCAVGC 126

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
           +FC TGT  L RNLT  EI+ QV  A            I  +      R ++N+V MGMG
Sbjct: 127 TFCLTGTMGLARNLTPGEIVEQVHRANR---------RIVELGEGQGPRPLTNLVFMGMG 177

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EPL N+ ++K +L +     G +FS R +T+STSG VP I ++GEE  V LAISL+A ++
Sbjct: 178 EPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPMIRKLGEETPVKLAISLNATTD 237

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
             R+ L+PINR+YPL  L++ACR +P + N RRITFEYV+L G+NDS  DA+ L ++++G
Sbjct: 238 AQRDALMPINRRYPLAQLLEACRSFP-IRNGRRITFEYVLLGGVNDSLEDAVRLARLVRG 296

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           IP K+NLIP+N  PG  Y     + +V F E +     ++ +R  RG DI AACGQL + 
Sbjct: 297 IPTKVNLIPYNANPGLPYRAPAPERVVEFQETLAARNLTAVVRKNRGGDISAACGQLAAE 356


>gi|284047696|ref|YP_003398035.1| radical SAM enzyme, Cfr family [Acidaminococcus fermentans DSM
           20731]
 gi|283951917|gb|ADB46720.1| radical SAM enzyme, Cfr family [Acidaminococcus fermentans DSM
           20731]
          Length = 353

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 134/372 (36%), Positives = 200/372 (53%), Gaps = 28/372 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+ ++G+  EEL+  L  +G+     + R  Q+++W+Y +   DF  MS++S++ R  
Sbjct: 1   MCKKEIMGLTLEELQTELAGLGM----KKFRAEQVFRWLYEKAATDFSQMSNLSKDARQQ 56

Query: 64  LNQHFSIIY--PEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           L   ++I     +++ E  S DG T K LL            +ETV +      ++C+SS
Sbjct: 57  LADRYTIATAQVKVLKEYRSRDGLTHKVLLELTD-----GATVETVLMHHDYGYSVCLSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C+FC +G    VRNLTA EIL Q+   +S               +   G ++S
Sbjct: 112 QVGCAMNCAFCASGLHGFVRNLTAAEILAQLYFFQS--------------GLQPGGERVS 157

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
            IV+MG GEP+ N DNV K+L I     G     R +T+ST G VP I  +  +   + L
Sbjct: 158 RIVVMGSGEPMLNLDNVLKALDILHSDRGQCIGYRNMTVSTCGVVPGIQELTAQGRNINL 217

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           AISLH  S +LRN L+PINRKYP   +I A   Y   SN R++ +EY++L GIND P DA
Sbjct: 218 AISLHGASQELRNRLMPINRKYPFPEVIQAADAY-EKSNGRQVMYEYILLAGINDRPEDA 276

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            NL   L+     INLIP NP P   +     + +  F + +K+   +  +R   G DI 
Sbjct: 277 RNLADALEHKECVINLIPANPVPEKGFERPSDRAVDRFFQMLKKRRLNVTVRKEMGKDIN 336

Query: 360 AACGQLKSLSKR 371
           AACGQL++ + +
Sbjct: 337 AACGQLRASALK 348


>gi|149176961|ref|ZP_01855570.1| hypothetical protein PM8797T_07067 [Planctomyces maris DSM 8797]
 gi|148844216|gb|EDL58570.1| hypothetical protein PM8797T_07067 [Planctomyces maris DSM 8797]
          Length = 368

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 192/366 (52%), Gaps = 26/366 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           +  + R++L +  ++          R  QI +WI+ + + DF  M DIS++ R LL ++F
Sbjct: 22  ITDLTRDQLAQWCIEH----ESSSYRADQIRRWIFTKRVNDFDAMHDISKKFRDLLKENF 77

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            +    IV  + S D T K LL            +E V + E  R T+C+S+QVGC++ C
Sbjct: 78  RLFSTRIVKHQTSKDRTEKLLLALHD-----GHHVECVLMREPKRNTVCISTQVGCAMGC 132

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC +G   L RNLT  EIL Q+L    ++G+                 +ISNIV+MG+G
Sbjct: 133 VFCASGLLGLTRNLTMGEILEQILRLDRIIGE---------------EERISNIVVMGIG 177

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVS 247
           EPL N   +  +L   +   G+    R+IT+ST G    I  + +     +LA+SLHA +
Sbjct: 178 EPLANLSALIPALDTLNHKGGMGIGARKITVSTVGLPVKIRELADVNKSYILAVSLHAPN 237

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           + LR+ +VP N K  ++ ++DA  +Y  ++  RR+TFEY++L G+NDSP  A  L  +LK
Sbjct: 238 DTLRDQIVPTNNKIGIQKILDATDYYY-VTTGRRVTFEYILLAGVNDSPAHAHELACLLK 296

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
              A +NLIP N      Y     +D+  F   + + G +  +R  +G DI AACGQL+ 
Sbjct: 297 HRNAHVNLIPANGVEETGYKTPTTEDVDRFFMTLAKGGVNVTVRKRKGDDIDAACGQLRL 356

Query: 368 LSKRIP 373
             ++  
Sbjct: 357 NREKEK 362


>gi|170757229|ref|YP_001782049.1| radical SAM protein [Clostridium botulinum B1 str. Okra]
 gi|205829641|sp|B1IIL7|RLMN_CLOBK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|169122441|gb|ACA46277.1| radical SAM enzyme, Cfr family [Clostridium botulinum B1 str. Okra]
          Length = 342

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 135/362 (37%), Positives = 205/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+++    EEL+E L+     +     R  Q++ WIY + I DF  M +I  + ++LL+ 
Sbjct: 2   ENILDFTLEELKEWLIS----KEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57

Query: 67  HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  P++V + +S D  T K+L  +    I     IE+V +  K   ++CVS+QVGC 
Sbjct: 58  NFYIGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    ++RNLT+ EIL Q++ A+  +G+                 +ISN+V+M
Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           G GEPL NF+NV K L + +    L+  +R ITLST G VP I  + ++   + LAISLH
Sbjct: 156 GSGEPLDNFENVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  + LR  ++PI  KY ++ L++AC +Y   +N  RITFEY ++KG NDS ++A  L  
Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLST 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG    +NLIP N      Y  S  K+I +F   +K +G  + IR   G DI AACGQ
Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|298490256|ref|YP_003720433.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708]
 gi|298232174|gb|ADI63310.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708]
          Length = 356

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 122/364 (33%), Positives = 188/364 (51%), Gaps = 31/364 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+G    EL   + + G P      R  Q+  WIY +G+R    +S   +  R  +   
Sbjct: 23  PLLGASVVELTAWVQEQGQPA----YRGKQLHDWIYDKGVRSLGDISVFPKSWREKVAD- 77

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             I    +    ++ D T K+LL+     I     IETV IP   R T+CVS+QVGC + 
Sbjct: 78  VPIGRSSLHYRAVAPDDTVKYLLKLADGEI-----IETVGIPSHKRLTVCVSTQVGCPMA 132

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG     RNL+  EI+ QVL  +                     +++SN+V MG+
Sbjct: 133 CDFCATGKGGYKRNLSRGEIVDQVLTVQE-----------------DFQQRVSNVVFMGL 175

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246
           GEPL N +NV  +L   ++ +G    +R +T+ST G    I ++    + + LA+SLHA 
Sbjct: 176 GEPLLNTENVILALKALNEDVG--IGQRSLTISTVGIRDRIHQLAQHHLQITLAVSLHAP 233

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +  LR  L+P  + YP+E L++ CR Y  ++   R+TFEY++L G+ND P  AL L K L
Sbjct: 234 NQALREQLIPSAKPYPIEDLLNECREYVEITGR-RVTFEYILLAGVNDLPEQALELSKRL 292

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +G  + +NLIP+NP    +Y   ++  I  F   +++   +  +R  RGL+  AACGQL+
Sbjct: 293 RGFQSHVNLIPYNPIEEVDYKRPNRDRIQAFVNVLQQQNITVSVRYSRGLEADAACGQLR 352

Query: 367 SLSK 370
           +  +
Sbjct: 353 TSKR 356


>gi|297564808|ref|YP_003683780.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946]
 gi|296849257|gb|ADH62272.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946]
          Length = 344

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 128/335 (38%), Positives = 186/335 (55%), Gaps = 21/335 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI  W+Y RG+R++  M+D+ + +R  L + + +     V   +S DG  K+L   
Sbjct: 25  YRKEQIAHWLYARGVREWSEMTDLPKGLRQELAEKYRVSEFAHVAPFVSQDGAVKYLYTL 84

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                    + E VY+P   R T+C+SS VGC   C+FC TG     RNLTA EIL Q+L
Sbjct: 85  -----WDGQKTEAVYMPYAGRKTICISSMVGCPAGCTFCATGKMGFGRNLTAAEILDQIL 139

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
            A    G  P              R+I N+V+MGMGEPL N ++V +++    D  GL+ 
Sbjct: 140 FAAHHQGHSP--------------REIRNVVLMGMGEPLLNLNHVLEAIRRMLDPQGLAM 185

Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S RRITLST G    I R+  E++GV LA+SLHA  +  R  ++P   +Y +  +++A R
Sbjct: 186 SPRRITLSTVGIPRGIYRLAQEDLGVRLALSLHAPDDQTRQKIIPTAHRYSIAEIMEAVR 245

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           HY   +   R+T EY +LKG+ND P  A  L  +L G+ A +NLIP+NPW G  +  + +
Sbjct: 246 HYYAQTKR-RVTLEYTLLKGLNDHPWQARALAGLLAGLSAHVNLIPWNPWEGAPHQGTGK 304

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + I+ F+  ++R G    +R  RG D+ AACGQL 
Sbjct: 305 EKILAFAAALERMGIPVSVRWSRGRDVGAACGQLA 339


>gi|228472503|ref|ZP_04057263.1| radical SAM enzyme, Cfr family [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275916|gb|EEK14672.1| radical SAM enzyme, Cfr family [Capnocytophaga gingivalis ATCC
           33624]
          Length = 345

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 133/367 (36%), Positives = 208/367 (56%), Gaps = 25/367 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + +  + +EEL+   L  G        R +Q+++W++ +G   F+ M+++S+E R LL++
Sbjct: 2   KDIRALKKEELQAFFLSHG----EKAFRANQVYEWLWTKGAHSFEQMTNLSKETRQLLSE 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           HF I + ++   + S DGT K  +R         + +E+V IP  +R T CVSSQVGCSL
Sbjct: 58  HFVINHIKVDTMQRSEDGTIKNAVRLHD-----GLYVESVLIPTDTRITACVSSQVGCSL 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC T   K +RNL+ +EI  QVL              I+       GR + NIV MG
Sbjct: 113 NCSFCATARLKRMRNLSPDEIFDQVL-------------TIDQQSRLYYGRPLRNIVFMG 159

Query: 187 MGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           MGEPL N+ NV K++   +    GL FS +RIT+STSG    I ++ ++ +   LA+SLH
Sbjct: 160 MGEPLMNYPNVMKAIERITSEKEGLGFSPKRITVSTSGVSKLIRKMADDKVKFRLAVSLH 219

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +   + RN ++P    +PL  L  A +++   +   RIT+EYV+ KGINDSP+D   L+ 
Sbjct: 220 SAIEETRNKIMPWTVDFPLTELRTALQYWYQQT-KSRITYEYVVWKGINDSPKDVEALVA 278

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             +  P K+NLI +NP     +  +D+K +  +   ++ +G ++ IR  RG DI AACGQ
Sbjct: 279 FCRFAPCKVNLIEYNPIDEGLFEQADEKALQLYKRKLEEAGITTTIRYSRGKDIDAACGQ 338

Query: 365 LKSLSKR 371
           L + +++
Sbjct: 339 LANKNEK 345


>gi|217967818|ref|YP_002353324.1| radical SAM enzyme, Cfr family [Dictyoglomus turgidum DSM 6724]
 gi|254807171|sp|B8E0X3|RLMN_DICTD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|217336917|gb|ACK42710.1| radical SAM enzyme, Cfr family [Dictyoglomus turgidum DSM 6724]
          Length = 348

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 209/368 (56%), Gaps = 28/368 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++     E+   L   G P      R  QI+ WIY + + +   M+++S+ +R  L ++
Sbjct: 3   NILSFEINEIRNILQGWGEPS----YRADQIFDWIYKKLVLNPLDMTNLSKTLRQKLLEY 58

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           FS   P++V  +I+ DG T+K+LL            IETV I  K+R T+CVS QVGC +
Sbjct: 59  FSFQIPKVV--RITGDGNTKKYLLELED-----GENIETVLISHKNRNTVCVSVQVGCPI 111

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L RNL   EI+ Q+++ +                +     KISN+V MG
Sbjct: 112 GCKFCATGLIGLKRNLETHEIIGQLMVIQE--------------DLEKKEEKISNVVYMG 157

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEPL N+DNV KS+ I  +  G +   + ITLST G +P I ++ EE + + LAISLHA
Sbjct: 158 MGEPLANYDNVIKSIRIIKEEWGFNIGSKHITLSTIGIIPKIYQLAEENLKIRLAISLHA 217

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+LR+ ++PIN++YP+E L+++  +Y   +   R+TFEYV++K  ND   DA  L+++
Sbjct: 218 SNNELRSKIIPINKEYPIEELLESAFYYAEKTGR-RVTFEYVLIKNFNDRREDAKELVRL 276

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG PA +NLIP+N      +  SD KDI  F E +  SG +  +R   G  I A CGQL
Sbjct: 277 LKGKPAHVNLIPWNKVREYPWETSDLKDIFRFKEILANSGINVTLRISYGSKIKAGCGQL 336

Query: 366 KSLSKRIP 373
           ++L  +  
Sbjct: 337 RALYLKNK 344


>gi|300854446|ref|YP_003779430.1| hypothetical protein CLJU_c12600 [Clostridium ljungdahlii DSM
           13528]
 gi|300434561|gb|ADK14328.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
          Length = 345

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 122/370 (32%), Positives = 195/370 (52%), Gaps = 31/370 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++    EEL+  +            R  QI  WIY  G  DF  M++I +++   L  +
Sbjct: 3   NILDFDMEELKSWMRDN----CESEFRAKQIMDWIYKNGQCDFDNMTNIPKKLLEKLKTN 58

Query: 68  FSIIYPEIVDEKISC--DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           F I   E+V +  S   D T K+L  +    +     +ETV +  K   ++C+S+QVGC 
Sbjct: 59  FYIGTTELVKKCESKFRD-TFKFLYEYKDGNM-----VETVVMKYKHGNSICISTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    +VRNLTA E+L Q+L +++ +G+                 +ISNIV+M
Sbjct: 113 MGCKFCASTIDGMVRNLTAGEMLGQILKSQNEIGE-----------------RISNIVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           G GEPL N++NV K L I +     +  +R ITLST G VP I  + + ++ + LAISLH
Sbjct: 156 GSGEPLDNYENVLKFLKIVNSEYSFNIGQRHITLSTCGIVPKIKDLADRDLQITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ +R  ++PI  KY ++ +IDAC++Y   +   R++FEY ++ G+NDS +    L +
Sbjct: 216 APNDVMRKKIMPIANKYSIKDVIDACKYYIDKTGK-RVSFEYALVSGVNDSLKCCDELTE 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++ G+   +NLIP N         S   D+  F   + ++   + IR   G DI AACGQ
Sbjct: 275 LISGLLCHVNLIPVNEVKENNLKKSSSDDVKKFYHRLIKNKIETTIRREMGSDIDAACGQ 334

Query: 365 LKSLSKRIPK 374
           L+    +  K
Sbjct: 335 LRRSYLKSKK 344


>gi|167772290|ref|ZP_02444343.1| hypothetical protein ANACOL_03667 [Anaerotruncus colihominis DSM
           17241]
 gi|167665393|gb|EDS09523.1| hypothetical protein ANACOL_03667 [Anaerotruncus colihominis DSM
           17241]
          Length = 359

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 127/381 (33%), Positives = 200/381 (52%), Gaps = 35/381 (9%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +++  L     +++E+   ++G+P    R R  QI+ W++ + + DF  M+++   +R  
Sbjct: 1   MEQIDLKSYTYQQMEKLTAEMGLP----RFRAGQIFGWLHEKRVSDFDEMTNLPAALRSQ 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L + F I    +    +S  DGT K+L             +E+V +      TLC+SSQV
Sbjct: 57  LAEKFYINAIRVKKRLVSSIDGTVKYLYELRD-----GNCVESVLMHYHHGNTLCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +     VR+LTA E+L +V +A++  G+                 ++  +
Sbjct: 112 GCRMGCRFCASTIGGRVRDLTASEMLDEVYMAQADSGE-----------------RVDGV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           VMMG+GEPL NFDNV   L I SD  GL+   R ++LST G V  I  + E  + + L++
Sbjct: 155 VMMGIGEPLDNFDNVMAFLEILSDPRGLNLGLRHVSLSTCGLVDRIYALAERRLQLTLSV 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA ++ +R+  +P+N +Y ++ L+ ACR Y   +   RI+FEY ++ G ND+P  A  
Sbjct: 215 SLHAPNDAIRSRSMPVNARYNVDTLLRACRDYFAATGR-RISFEYALIAGENDAPEHAAE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L   L+G+ A +NLIP NP     Y   D+  I  F   ++  G ++ IR   G DI AA
Sbjct: 274 LAARLRGMGAHVNLIPVNPVAETGYRRGDRAAIERFQNELRLRGVNATIRRELGADISAA 333

Query: 362 CGQLK------SLSKRIPKVP 376
           CGQL+      S S R+P   
Sbjct: 334 CGQLRRQDADASTSGRVPVTE 354


>gi|23100552|ref|NP_694019.1| hypothetical protein OB3097 [Oceanobacillus iheyensis HTE831]
 gi|81745262|sp|Q8ELW7|RLMN_OCEIH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|22778785|dbj|BAC15053.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 355

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 204/376 (54%), Gaps = 26/376 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K S+ G+  E+L++ L++ G      R R  Q+W W+Y + I  F  M++++Q    L
Sbjct: 1   MSKSSIYGLTYEKLKDWLIEHG----EKRFRAEQVWNWLYKKRINSFDEMNNVNQSAIQL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +        + S DGT K+L +     +     IETV +      ++CV++QVG
Sbjct: 57  LKDNFVLHTMGEEIRQESQDGTIKFLFKLEDGNL-----IETVLMRFHYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  +  R+L++ E++ Q++  +  L +    +            ++S+IV
Sbjct: 112 CNIGCTFCASGLLRKSRDLSSGEVVEQIMNVQKHLDERGEKD------------RVSHIV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEP  N++N+   L   +D  GL+   R IT+STSG    I    ++ I V LAIS
Sbjct: 160 VMGIGEPFDNYNNLMDFLYTVNDDRGLNIGARHITVSTSGLAHKIYEFADDPIQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +++LR  ++ INR +P++ L+ +  +Y    N  RIT+EY+ML  +ND  ++A+ L
Sbjct: 220 LHAPNDELRTKIMKINRAFPIDKLMKSVDYYLQKKNR-RITYEYIMLDDVNDHKKEAIEL 278

Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             ++K     A +NLIP+N      +Y  S  ++I  F E +   G +  +R   G DI 
Sbjct: 279 ANLIKNHRHLAYVNLIPYNTVDEHIDYRRSKSENIQAFYETLTELGINCGVRWENGADID 338

Query: 360 AACGQLKSLSKRIPKV 375
           AACGQL+S   +  K 
Sbjct: 339 AACGQLRSKQIKKSKA 354


>gi|56752343|ref|YP_173044.1| ribosomal RNA large subunit methyltransferase N [Synechococcus
           elongatus PCC 6301]
 gi|81561318|sp|Q5MZJ6|RLMN_SYNP6 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|56687302|dbj|BAD80524.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 351

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 190/368 (51%), Gaps = 37/368 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+G    EL++ ++  G P      R  Q+++W+Y R I +   +S   +  R  L Q
Sbjct: 5   TPLLGRSLPELQDWVVAQGQPS----YRAKQLYQWLYERSIHNLAEISVFPKAWRQSL-Q 59

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +   +IVD  +S  G+ K+LLR     I     IE V IP   R T+CVSSQ+GC++
Sbjct: 60  AVPVGRSQIVDRSVSPSGSIKYLLRLHDGEI-----IEAVGIPSGDRLTVCVSSQLGCAM 114

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG     R+L   EI+ QVL  +                     +++SNIV MG
Sbjct: 115 ACDFCATGKGGFRRHLAPHEIIDQVLTVQE-----------------DWQQRVSNIVFMG 157

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVML 239
           MGEPL N D V  ++   +    +   +R IT+ST G   +I R+ E        +   L
Sbjct: 158 MGEPLLNLDAVLAAIRCLNQD--IGIGQRGITVSTVGIPGHIRRLAETKRVGDRPLQFTL 215

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +  +R+ L+P +R YP+  L+  CR Y  ++   R+TFEY++L G+ND P  A
Sbjct: 216 AVSLHAPNQAIRDRLIPSSRHYPITDLLQECRDYVQITGR-RVTFEYILLAGLNDQPEQA 274

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++L+G  + +NLIP NP    EY    +  +  F++ +++   +  +R  +GL   
Sbjct: 275 EQLAQLLRGFQSHVNLIPCNPIDEVEYQRPSKARVDAFADALRQQRVAVTVRWSKGLGAD 334

Query: 360 AACGQLKS 367
           AACGQL++
Sbjct: 335 AACGQLRA 342


>gi|255323622|ref|ZP_05364752.1| radical SAM enzyme, Cfr family [Campylobacter showae RM3277]
 gi|255299336|gb|EET78623.1| radical SAM enzyme, Cfr family [Campylobacter showae RM3277]
          Length = 363

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 139/380 (36%), Positives = 210/380 (55%), Gaps = 42/380 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+    +EL++ L            R  QI++W+Y +    F  M ++ +++R  L Q
Sbjct: 2   KNLLDFTLDELKDQL--------SPPFRAKQIFEWLYKKNATSFDEMLNLPKDLRANLVQ 53

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
            F +   + V  + S DG+ K+L           + IE+V +P K              R
Sbjct: 54  EFYLDPLKCVKFERSADGSIKYLFELKD-----GLRIESVLLPMKEELNDENGEVTRHAR 108

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC + CSFC TG   L RNLT  EI+ Q+L  +                  
Sbjct: 109 YTICVSSQVGCRMGCSFCLTGKSGLTRNLTPGEIVGQILCIKREN--------------K 154

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  N+V MGMGEPL N +NV K++ I  ++ GL+ + RR T+STSG    I ++GE
Sbjct: 155 IPYERRVNVVYMGMGEPLDNLENVSKAIKILKENDGLAITPRRQTVSTSGLGSQIKKLGE 214

Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
            ++GV+LAISLHAV+N+LR+ L+PIN  Y +E +++A R +P +   +R+ FEY+++K +
Sbjct: 215 MDLGVLLAISLHAVTNELRSKLMPINNAYKIESVMEAVRGFP-IDMRKRVMFEYLVIKDM 273

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND  +DA  L+ +L GI AK+NLI FNP  G EY   +  D+  F   ++  G +  IR 
Sbjct: 274 NDGIKDAKKLVSLLHGIKAKVNLIYFNPHEGSEYGRPNTADMEAFQTYLRDHGVTCTIRQ 333

Query: 353 PRGLDILAACGQLKSLSKRI 372
            +GLDI AACGQLK    ++
Sbjct: 334 SKGLDISAACGQLKERDNQM 353


>gi|257059331|ref|YP_003137219.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC
           8802]
 gi|256589497|gb|ACV00384.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 8802]
          Length = 340

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 131/363 (36%), Positives = 195/363 (53%), Gaps = 31/363 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   +EL + + K G P      R  Q+ +W+Y +G R    +S   +  R  L  ++
Sbjct: 8   LLGKSLDELTQWVEKQGQPT----YRGKQLHQWLYEKGARSLDEISVFPKIWREKLI-NY 62

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I    I    ++ D TRK+LL     C+G  + IETV IP   R T+CVSSQVGC + C
Sbjct: 63  PIGRSTIDYRTVAPDATRKYLL-----CLGDGLIIETVGIPTAKRLTVCVSSQVGCPMAC 117

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     R+L A EI+ QVL  +                     R++S++V MGMG
Sbjct: 118 DFCATGKGGYQRHLRAHEIVDQVLTVQE-----------------DFQRRVSHVVFMGMG 160

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EPL N + V KS+ I +    +   +R +T+ST G    I ++    + V LA+SLHA +
Sbjct: 161 EPLLNLEEVVKSVKILNQD--IGIGQRSLTISTVGLPQKIIQLAHHHLQVTLAVSLHASN 218

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  + YPL+ L+  CR Y  ++   RI+FEYV+L G+ND P  A+ L  +LK
Sbjct: 219 QPLRETLIPSAQHYPLKNLLADCREYVNITGR-RISFEYVLLGGVNDLPEQAIELANLLK 277

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP    +Y   +Q  I TF + +++   +  +R  RGL+  AACGQL++
Sbjct: 278 GFQSHVNLIPYNPIDEADYQRPNQTQIQTFVQVLEQHKIAVSVRYSRGLEANAACGQLRA 337

Query: 368 LSK 370
             +
Sbjct: 338 SQR 340


>gi|262199015|ref|YP_003270224.1| radical SAM enzyme, Cfr family [Haliangium ochraceum DSM 14365]
 gi|262082362|gb|ACY18331.1| radical SAM enzyme, Cfr family [Haliangium ochraceum DSM 14365]
          Length = 378

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 147/367 (40%), Positives = 214/367 (58%), Gaps = 23/367 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L  +   E     L++G P    R R  QIW+W++  G+   + M+++ + +R LL 
Sbjct: 17  RIDLRTLDLAETVALALELGQP----RYRGEQIWRWVHGAGVTRLEDMANLPRTLRELLA 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  ++    +   + S DGTRK  LR           IETV IP+  + T C+SSQVGC+
Sbjct: 73  ERTTLGTLRVDAAQTSRDGTRKLRLRTRD-----GRAIETVLIPDGDKLTQCISSQVGCA 127

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T    L R+L   EI+ QV   R+LL +                R+I+N+V M
Sbjct: 128 LDCDFCATAKLGLTRHLDPGEIVDQVYRGRALLAEV------------EPERRITNLVYM 175

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
           GMGEPL N+ NV KSL + +  +G + S+RRIT+ST G VP I ++G E++   LAISL+
Sbjct: 176 GMGEPLHNYANVVKSLRLLTSELGANLSQRRITVSTVGQVPGIEKLGREDVRPNLAISLN 235

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A S+++R+ ++P+NRK+ +  L+ A R YP L   RR+TFEYV+L G+NDS  DA  L +
Sbjct: 236 ASSDEIRDRIMPVNRKWNIARLLQAVRDYP-LERRRRVTFEYVLLAGVNDSMADAARLSR 294

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+GIP K+N+IP+NP PG  Y       +  F    KR G  + +RTPRG DI AACGQ
Sbjct: 295 LLRGIPCKLNIIPWNPHPGAPYQRPSAHAVEAFQNEAKRLGLPTYLRTPRGDDIDAACGQ 354

Query: 365 LKSLSKR 371
           L +  ++
Sbjct: 355 LAARVEQ 361


>gi|148380460|ref|YP_001255001.1| radical SAM enzyme, Cfr family [Clostridium botulinum A str. ATCC
           3502]
 gi|153932990|ref|YP_001384683.1| radical SAM protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937048|ref|YP_001388204.1| radical SAM protein [Clostridium botulinum A str. Hall]
 gi|226949859|ref|YP_002804950.1| radical SAM enzyme, Cfr family [Clostridium botulinum A2 str.
           Kyoto]
 gi|205829625|sp|A7FW72|RLMN_CLOB1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829626|sp|A5I4T4|RLMN_CLOBH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|148289944|emb|CAL84057.1| radical SAM superfamily protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152929034|gb|ABS34534.1| radical SAM enzyme, Cfr family [Clostridium botulinum A str. ATCC
           19397]
 gi|152932962|gb|ABS38461.1| radical SAM enzyme, Cfr family [Clostridium botulinum A str. Hall]
 gi|226842641|gb|ACO85307.1| radical SAM enzyme, Cfr family [Clostridium botulinum A2 str.
           Kyoto]
          Length = 342

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 134/362 (37%), Positives = 205/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+++    EEL+E L+     +     R  Q++ WIY + I DF  M +I  + ++LL+ 
Sbjct: 2   ENILDFTLEELKEWLIS----KEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57

Query: 67  HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F +  P++V + +S D  T K+L  +    I     IE+V +  K   ++CVS+QVGC 
Sbjct: 58  NFYVGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    ++RNLT+ EIL Q++ A+  +G+                 +ISN+V+M
Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           G GEPL NF+NV K L + +    L+  +R ITLST G VP I  + ++   + LAISLH
Sbjct: 156 GSGEPLDNFENVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  + LR  ++PI  KY ++ L++AC +Y   +N  RITFEY ++KG NDS ++A  L  
Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLST 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG    +NLIP N      Y  S  K+I +F   +K +G  + IR   G DI AACGQ
Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|114566753|ref|YP_753907.1| hypothetical protein Swol_1227 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318220|sp|Q0AXL8|RLMN_SYNWW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|114337688|gb|ABI68536.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 357

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 145/376 (38%), Positives = 218/376 (57%), Gaps = 24/376 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN ++K+ L+G+   ++EE LL +       R R  Q++KWIY +    F  MSD+ + +
Sbjct: 1   MNSIEKKQLLGLDLNQMEEFLLGL----EEPRFRGRQVYKWIYQKECSSFYEMSDLPRSL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTL 116
           R  L++   +  P ++ +++  DG+RK+L+    +      +IE V +P+    KS  TL
Sbjct: 57  RKKLDEKARVSIPRVLKQRVGKDGSRKFLMELDDKK-----KIECVLLPQSRDKKSSYTL 111

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           C+S+QVGC + CSFC TG     RNL A EI+ Q L            +++   +     
Sbjct: 112 CLSTQVGCPIACSFCATGQSGFQRNLKAFEIIGQYL---------GSKKELSKRLKSPRA 162

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235
             ISN+V MGMGEPL N+D V KS+ + +D  G++  +RRIT+STSG V  I ++ +E I
Sbjct: 163 ELISNVVYMGMGEPLLNYDEVIKSVHMLNDPRGINLGQRRITISTSGEVAGIKKLAQENI 222

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
            + LAISLHA  N LR+ L+P+NRKYPLE+L  A   Y   +   R+TFEY++L  +N S
Sbjct: 223 QLTLAISLHACDNSLRDQLIPLNRKYPLEVLFPAIEDYIAFTGR-RVTFEYLLLDEVNMS 281

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
             DA  ++K+LK + A +NLIP+N   G  +   +   I  F + ++  G +  IR  RG
Sbjct: 282 RNDANKMVKLLKPLLANLNLIPYNEIEGLPFKKPETAKIWQFYQWLQDGGLNVSIREERG 341

Query: 356 LDILAACGQLKSLSKR 371
            DI AACGQL+S  +R
Sbjct: 342 SDINAACGQLRSDYRR 357


>gi|326790877|ref|YP_004308698.1| radical SAM protein [Clostridium lentocellum DSM 5427]
 gi|326541641|gb|ADZ83500.1| radical SAM enzyme, Cfr family [Clostridium lentocellum DSM 5427]
          Length = 345

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 116/367 (31%), Positives = 187/367 (50%), Gaps = 29/367 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           ++     ELEE +L  G      + R  Q+++W + + + D+  M+++  ++R  L +++
Sbjct: 4   ILNHTIAELEEIILAYG----ESKFRAKQLFEWFHKKMVWDYDEMNNLPLKLRDKLKENY 59

Query: 69  SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I    IV++  S  DGT K+L       I     IE+V +  K   ++C+SSQVGC + 
Sbjct: 60  PIQSLRIVEKLCSEIDGTIKYLFELSDSHI-----IESVLMRYKHGNSVCISSQVGCRMG 114

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +  +  VRNL   E++ Q+                          ++SNIV+MG 
Sbjct: 115 CKFCASTVEGRVRNLLPAEMVGQIYAISK-----------------DTNERVSNIVIMGS 157

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL       + + + +   G +  +R IT+ST G VP I  + EE + + LA+SLHA 
Sbjct: 158 GEPLEELGVTLRFVELINHPSGQNIGQRHITVSTCGLVPEIKALAEEKLQINLALSLHAT 217

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +++ R  ++PI RKY LE ++ AC ++   +N  R+TFEY +++G ND   DA  L  +L
Sbjct: 218 TDERRQAIMPIARKYSLEEVLAACHYFIEKTNR-RVTFEYALIEGENDKEEDARRLGGLL 276

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KG+   +NLIP N      Y  S    I  F   +++ G  + +R   G DI AACGQL+
Sbjct: 277 KGMLCHVNLIPVNQIDERSYKSSKASSIERFKGVLEQYGVPTTLRRTLGADIDAACGQLR 336

Query: 367 SLSKRIP 373
               +  
Sbjct: 337 RRYLKKR 343


>gi|170759295|ref|YP_001787821.1| radical SAM protein [Clostridium botulinum A3 str. Loch Maree]
 gi|205829629|sp|B1KX56|RLMN_CLOBM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|169406284|gb|ACA54695.1| radical SAM enzyme, Cfr family [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 342

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 134/362 (37%), Positives = 204/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+++    EEL+E L+     +     R  Q++ WIY + I DF  M +I  + ++LL+ 
Sbjct: 2   ENILDFTLEELKEWLIS----KEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57

Query: 67  HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F I  P++V + +S D  T K+L  +    I     IE+V +  K   ++CVS+QVGC 
Sbjct: 58  NFYIGVPKVVKKLMSQDKNTYKFLFEYNDGNI-----IESVVMKYKHGNSICVSTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    ++RNLT+ EIL Q++ A+  +G+                 +ISN+V+M
Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           G GEPL NF NV + L + +    L+  +R ITLST G VP I  + ++   + LAISLH
Sbjct: 156 GSGEPLDNFKNVTEFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  + LR  ++PI  KY ++ L++AC +Y   +N  RITFEY ++KG NDS ++A  L  
Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLST 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG    +NLIP N      Y  S  K+I +F   +K +G  + IR   G DI AACGQ
Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|218246284|ref|YP_002371655.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC
           8801]
 gi|254807168|sp|B7K4N4|RLMN_CYAP8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|218166762|gb|ACK65499.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 8801]
          Length = 340

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/363 (35%), Positives = 194/363 (53%), Gaps = 31/363 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   +EL + + K G P      R  Q+ +W+Y +G R    +S   +  R  L  ++
Sbjct: 8   LLGKSLDELTQWVEKQGQPT----YRGKQLHQWLYEKGARSLDEISVFPKTWREKLI-NY 62

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I    I    ++ D TRK+LL     C+G  + IETV IP   R T+CVSSQVGC + C
Sbjct: 63  PIGRSTIDYRTVAPDATRKYLL-----CLGDGLIIETVGIPTAKRLTVCVSSQVGCPMAC 117

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     R+L A EI+ QVL  +                     R++S++V MGMG
Sbjct: 118 DFCATGKGGYQRHLRAHEIVDQVLTVQE-----------------DFQRRVSHVVFMGMG 160

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EPL N + V KS+ I +    +   +R +T+ST G    I ++    + V LA+SLHA +
Sbjct: 161 EPLLNLEEVVKSVKILNQD--IGIGQRSLTISTVGLPQKIIQLAHHHLQVTLAVSLHASN 218

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  + Y L+ L+  CR Y  ++   RI+FEYV+L G+ND P  A+ L  +LK
Sbjct: 219 QPLRETLIPSAQHYTLKNLLADCREYVNITGR-RISFEYVLLGGVNDLPEQAIELANLLK 277

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP    +Y   +Q  I TF + +++   +  +R  RGL+  AACGQL++
Sbjct: 278 GFQSHVNLIPYNPIDEADYQRPNQTQIQTFVQVLEQHKIAVSVRYSRGLEANAACGQLRA 337

Query: 368 LSK 370
             +
Sbjct: 338 SQR 340


>gi|297617050|ref|YP_003702209.1| radical SAM enzyme, Cfr family [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144887|gb|ADI01644.1| radical SAM enzyme, Cfr family [Syntrophothermus lipocalidus DSM
           12680]
          Length = 371

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 135/368 (36%), Positives = 207/368 (56%), Gaps = 21/368 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ LIGM + +LE  +  +G        R+ Q+++W+Y   + +F+ M+D+ +++R  + 
Sbjct: 2   KKELIGMTKTDLESMVKSLGGEA----FRSRQLYRWLYKNLVFEFENMTDLPRDLRDRVK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTLCVSSQ 121
           Q  SI  P +  E+IS DGT K LL            +E V IP+    + R TLC+SSQ
Sbjct: 58  QVASITLPVVERERISRDGTVKVLLGLQD-----GQHVEMVMIPQTRAGRHRYTLCISSQ 112

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC TG    VRNL   EI  QVLL            +           +++N
Sbjct: 113 VGCPIGCPFCATGRSGFVRNLAVNEITGQVLLG------LLRLRNSNTFETQGSATRLTN 166

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           +V MGMGEP  N+  V K + + +D  GL+  +R IT+ST+G V  I R+ +E + V LA
Sbjct: 167 VVFMGMGEPFLNYSAVMKCIRLMNDPDGLNIGQRHITVSTAGEVRGIRRLAQEGLQVTLA 226

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLH+  +++R+ LVP+NRKYPL  L +A R Y G++   R+T EYV+L+G+N S +D  
Sbjct: 227 VSLHSARDEVRDWLVPLNRKYPLSELEEALRFYCGVTKR-RVTLEYVLLEGVNTSRQDVA 285

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           +LI   + +   +NLIP+N     E+       ++ F + +K +G +S +R  RG DI  
Sbjct: 286 SLIDFARPLLCNVNLIPYNQIEKAEFRRPSPSTVLRFQQWLKEAGVNSVVREERGGDIEG 345

Query: 361 ACGQLKSL 368
           ACGQL++ 
Sbjct: 346 ACGQLRAR 353


>gi|332291134|ref|YP_004429743.1| radical SAM enzyme, Cfr family [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169220|gb|AEE18475.1| radical SAM enzyme, Cfr family [Krokinobacter diaphorus 4H-3-7-5]
          Length = 346

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 204/366 (55%), Gaps = 24/366 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K  +  + +EEL +  +  G        R +Q+++W++ +G  DF  M+++S++ R LL
Sbjct: 4   DKRDIRKLSKEELRDFFVSQG----DKPFRGNQVYEWLWQKGAHDFIDMTNLSKDTRILL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +++F I +  +   + S DGT K  +      +     +E+V IP K+R T CVSSQVGC
Sbjct: 60  DENFVINHIRVDQMQRSSDGTIKNGVELHDGLM-----VESVLIPTKNRTTACVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C FC T   K +RNL  +EI+ QV++       +               + +SNIV 
Sbjct: 115 SLNCKFCATARLKRMRNLNPDEIVDQVVVIDRQSRLY-------------HDKPLSNIVF 161

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N++NV K++   +D  GL  S +RIT+STSG    I ++ ++ +   LA+SL
Sbjct: 162 MGMGEPLMNYNNVIKAIDKITDPEGLGMSPKRITVSTSGVPKIIKKMADDDVKFNLAVSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  +++R  ++P N + PL  L +A  ++   +   RIT+EYV+  GIND   D + L+
Sbjct: 222 HSALDNVRTEIMPFNEQMPLADLKEALIYWYEKTGK-RITYEYVVWDGINDRHIDIMALL 280

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
              K +P+K+N+I +NP    ++  ++ + I  +   ++ +G +  +R  RG DI AACG
Sbjct: 281 DFCKAVPSKVNIIEYNPIDDGQFQQANPEAIDRYVSVLEANGVTVTVRRSRGKDIDAACG 340

Query: 364 QLKSLS 369
           QL +  
Sbjct: 341 QLANKQ 346


>gi|304316971|ref|YP_003852116.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778473|gb|ADL69032.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 343

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 133/364 (36%), Positives = 202/364 (55%), Gaps = 31/364 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  M  +ELE+  + IG      + R  Q+++WIY RG+ +F+ M+D+  E+R  LN 
Sbjct: 2   VDLKNMTIDELEKFFVDIG----ETKYRAKQVFQWIY-RGVTNFEEMTDLKIELRKKLNS 56

Query: 67  HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              I   +I  + +S  D T K+L       I     +E V I      T C+S+QVGC+
Sbjct: 57  IAYISSLKIAQKLVSDADETAKYLFLLDDENI-----VEGVAIKYSYGNTSCISTQVGCN 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +G    VRNL A E++ +VL+  +  G                  KISNIV+M
Sbjct: 112 MKCSFCASGIGGKVRNLKASEMVDEVLIMDNDYG------------------KISNIVLM 153

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEP  N++ V K + I ++  G+    R IT+ST G VP I     E +GV L+ISLH
Sbjct: 154 GSGEPFDNYEEVMKFIKIVNNPFGMGVGIRHITISTCGIVPKIYDFANEGLGVNLSISLH 213

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++DLR  L+PIN+ YP++ LI AC++Y   ++  R+TFEY ++K +ND+   ++ L K
Sbjct: 214 APTDDLRTQLMPINKVYPIKDLIKACKYYIDKTHR-RVTFEYSLIKDVNDNYEMSVKLSK 272

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+G+   +NLIP N      Y  +D + I+ F   ++++G +  +R   G DI AACGQ
Sbjct: 273 LLRGLLCHVNLIPINYVDEIGYKKADNEKIIAFKNTLEKNGITCTVRRELGSDINAACGQ 332

Query: 365 LKSL 368
           L+  
Sbjct: 333 LRRK 336


>gi|218282588|ref|ZP_03488826.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989]
 gi|218216459|gb|EEC89997.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989]
          Length = 336

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 120/354 (33%), Positives = 194/354 (54%), Gaps = 21/354 (5%)

Query: 21  LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI 80
           + +  +       R  QI++W+Y   + D   M+++S+E R +L + F +   E++ +++
Sbjct: 1   MCEYALDHGWKSYRGHQIFQWLYRNRVFDIDEMTNVSKETREILKKDFIVNPLELIKKQV 60

Query: 81  SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140
           S DGT K+L +     +     +E+V +      ++CVSSQVGC++ C+FC +G  K  R
Sbjct: 61  SHDGTTKFLFKTSDGAL-----LESVMMVFDYGRSVCVSSQVGCNMGCAFCASGLTKKKR 115

Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
           +LT+ E++ QV+  +                +     ++S+IV+MG GEP  N+DNV   
Sbjct: 116 DLTSGEMVAQVMYVQKE--------------LDKDNLRLSHIVVMGTGEPFDNYDNVMNF 161

Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINR 259
           L+  +   GL    R IT+ST G VP I     E     LAISLHA +++LR+ L+P+N 
Sbjct: 162 LATVNHDRGLGIGSRHITISTCGIVPRIYDFANEHTQYNLAISLHAPNDELRDQLMPVNH 221

Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
            YPL+ L++A ++Y G  N RR+TFEY++LKG+ND P  A  L K+L G+ A +NLIP+N
Sbjct: 222 AYPLKELMEAIQYY-GKENNRRLTFEYILLKGVNDHPEHAKQLSKLLHGMNAYVNLIPYN 280

Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
                 +      + + F + + ++     IR   G DI AACGQL+    +  
Sbjct: 281 AVDEKGFKSVTHDEAMVFYDLLMKNYVRCTIRKEHGNDIDAACGQLRIKEIKKE 334


>gi|198275963|ref|ZP_03208494.1| hypothetical protein BACPLE_02146 [Bacteroides plebeius DSM 17135]
 gi|198271592|gb|EDY95862.1| hypothetical protein BACPLE_02146 [Bacteroides plebeius DSM 17135]
          Length = 351

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 193/373 (51%), Gaps = 29/373 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+G    EL+  +  +G+P    +    QI  W+Y + +   + M+++S + R  L 
Sbjct: 4   KTPLLGKTLNELKTIVQDLGMP----KFTAGQIASWLYDKKVGSIEEMTNLSLKNRERLM 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +++ +     V E  S DGT K+L      C      IE+VYIP+  R TLCVSSQVGC 
Sbjct: 60  ENYEVGASAPVHEVRSVDGTVKYLF-----CTPEGDYIESVYIPDDDRATLCVSSQVGCK 114

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LTA +IL Q+                           ++N+V M
Sbjct: 115 MNCKFCMTGKQGYTTSLTAAQILNQIYSVPERD-------------------TLTNVVFM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP  N D V ++L I +   G  +S +RIT+ST G    + R  EE    LAISLH+
Sbjct: 156 GMGEPFDNLDEVLRALEILTADYGYKWSPKRITVSTVGLRKGLERFLEESDCHLAISLHS 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  +++  R Y   S  RR++FEY++ KG+NDS   A  L+K+
Sbjct: 216 PFPSQRRELMPAEKAFSITEMVEILRRY-DFSKQRRLSFEYIVFKGVNDSLIYAKELVKL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  ++NLI F+  P  +   +D + ++ F + + + G  + IR  RG DI AACG L
Sbjct: 275 LRGLDCRMNLIRFHAIPNVDLEGTDMESMIAFRDYLTQHGLFATIRASRGEDIFAACGML 334

Query: 366 KSLSKRIPKVPRQ 378
            +  ++  K  ++
Sbjct: 335 STAQQQAEKKEKE 347


>gi|302542187|ref|ZP_07294529.1| cfr family radical SAM enzyme [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459805|gb|EFL22898.1| cfr family radical SAM enzyme [Streptomyces himastatinicus ATCC
           53653]
          Length = 372

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 183/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E  EA+  +G        R +Q+ +  + R   D    +D+    R  L  
Sbjct: 24  RHLADLTPAERREAVAALG----EKPFRAAQVSRHYFARYTDDPAQWTDVPAAAREKLAA 79

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   ISCD   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 80  GLLPDLMSVV-RHISCDDDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 133

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    IP    ++SNIV 
Sbjct: 134 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEIPGGPARLSNIVF 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 185 MGMGEPLANYNRVIGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 244

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   RI+ EY ++K IND    A  
Sbjct: 245 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RISIEYALIKDINDQAWRADL 303

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F   ++R G    +R  RG +I  A
Sbjct: 304 LGRLLKGHRVHVNLIPLNPTPGSKWTASRPEDEKAFVAALERHGVPVTVRDTRGQEIDGA 363

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 364 CGQLAATER 372


>gi|269127610|ref|YP_003300980.1| radical SAM enzyme, Cfr family [Thermomonospora curvata DSM 43183]
 gi|268312568|gb|ACY98942.1| radical SAM enzyme, Cfr family [Thermomonospora curvata DSM 43183]
          Length = 388

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 185/368 (50%), Gaps = 25/368 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E   A+ ++G        R  Q+ +  + R + D   M+D+   VR  L  
Sbjct: 40  RHLADLTPAERRAAVAELG----EKPFRAQQLSRHYFTRLVDDPAQMTDLPAAVREHLAA 95

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                    V   + CDG  TRK L R     +     IE+V +    R T+CVSSQ GC
Sbjct: 96  ELLPTLLTEV-RALDCDGGATRKTLWRAFDGTL-----IESVLMRYPDRITMCVSSQAGC 149

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ QV+          G   +    I     +ISNIV 
Sbjct: 150 GMNCPFCATGQAGLTRNLSTGEIVEQVVA---------GARALARGKIAGGPGRISNIVF 200

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V  ++   +D    GL  S+R +T+ST G VP IAR+ +E + V LA+
Sbjct: 201 MGMGEPLANYKAVLGAIRRITDPAPDGLGISQRSVTVSTVGLVPAIARLADEGLSVRLAV 260

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   +   R++ EY +++ +ND    A  
Sbjct: 261 SLHAPDDELRDELVPVNTRWKVREVLDAAWAYADRTGR-RVSIEYALIRDVNDQAWRADL 319

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F   ++  G    +R  RG +I  A
Sbjct: 320 LGRLLKGHLVHVNLIPLNPTPGSKWTASRPRDEREFVARLQAHGVPVTVRDTRGREIDGA 379

Query: 362 CGQLKSLS 369
           CGQL + +
Sbjct: 380 CGQLAAAT 387


>gi|325955527|ref|YP_004239187.1| ribosomal RNA large subunit methyltransferase N [Weeksella virosa
           DSM 16922]
 gi|323438145|gb|ADX68609.1| Ribosomal RNA large subunit methyltransferase N [Weeksella virosa
           DSM 16922]
          Length = 348

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 124/372 (33%), Positives = 206/372 (55%), Gaps = 25/372 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN  KK  +  + +++LE     IG        R  Q+++W++ +   DF  M+++S+ +
Sbjct: 1   MNPTKK-DIRKLSQQDLEVYFQSIG----EKAFRGKQVYEWLWKKNAHDFNDMTNLSKNL 55

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L+  F I   E+   + S DGT K  ++     +     +E+V IP ++R T C+SS
Sbjct: 56  RENLDAAFRIQPVEVDFLQKSNDGTIKNAVKLHDGNV-----VESVLIPTETRTTACISS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL C+FC T   K +RNLTA EI+ QV++      ++               R +S
Sbjct: 111 QVGCSLDCTFCATAQLKRMRNLTAAEIVDQVVIIDRESREY-------------FDRPLS 157

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           NIV MGMGEPL N+  V +++   +   GL  S RRITLSTSG    I ++ +E + + L
Sbjct: 158 NIVFMGMGEPLLNYTEVVEAIKKITLPEGLGMSPRRITLSTSGIPKMIEKLADEDLKIGL 217

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+   ++RN ++P + K+PL  L+ + +++   +   +ITFEY++ K IND   D 
Sbjct: 218 AVSLHSAREEIRNKIMPFSVKFPLTDLLKSLQYWYD-TTKSKITFEYIVWKDINDKKEDI 276

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L++  K +P+K+N+I +N      Y  +  + +  + + ++++G    +R  RG DI 
Sbjct: 277 DALVRFCKRVPSKVNIIEYNTIDDGPYQQASPQVLNAYIDALEKNGIIVNVRRSRGKDID 336

Query: 360 AACGQLKSLSKR 371
           AACGQL + + +
Sbjct: 337 AACGQLANKTTK 348


>gi|300866402|ref|ZP_07111100.1| Ribosomal RNA large subunit methyltransferase N [Oscillatoria sp.
           PCC 6506]
 gi|300335612|emb|CBN56260.1| Ribosomal RNA large subunit methyltransferase N [Oscillatoria sp.
           PCC 6506]
          Length = 349

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 125/361 (34%), Positives = 182/361 (50%), Gaps = 31/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+G    EL   + + G P      R  Q+ +WIY +G+R    +S  S++ R  L  +
Sbjct: 16  PLLGANLAELTAWVQEQGQPA----YRAKQLHQWIYEKGVRSLSEISVFSKQWRESLA-N 70

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             I    I    ++ D T K+LL+     I     +E V IP + R T+CVSSQVGC + 
Sbjct: 71  VPIGRSIIHHRSVAPDQTVKYLLKLADGQI-----VEAVGIPTEKRLTVCVSSQVGCPMA 125

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG     R+L   EI+ QVL  +                     R++S+IV MGM
Sbjct: 126 CDFCATGKGGFQRHLAKHEIVDQVLTVQE-----------------DFKRRVSHIVFMGM 168

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N +NV  ++   ++ +G    +R IT+ST G    I  + E  + V LA+SLH  
Sbjct: 169 GEPLLNLENVVAAVKCLNEDVG--IGQRNITISTVGIRDRIRLLAEHHLQVTLAVSLHGS 226

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +  LR  L+P  R Y  + L++ CR Y  ++   R++ EY++L G+ND P  A  L   L
Sbjct: 227 NQKLREKLIPSARNYRFDELMEECREYVKITGR-RLSVEYILLAGVNDLPEHAAELADNL 285

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +G    +NLIP+NP    +Y    Q  I  F E +K    +  +R  RGLD  AACGQL+
Sbjct: 286 RGFQCHVNLIPYNPIAEADYERPSQYRIKVFVEALKARHIAVSVRYSRGLDADAACGQLR 345

Query: 367 S 367
           +
Sbjct: 346 A 346


>gi|332879827|ref|ZP_08447516.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332682204|gb|EGJ55112.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 349

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 209/372 (56%), Gaps = 25/372 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN   K  +    +EEL     + G        R +Q+++W++ +G+  F+ M+++ +  
Sbjct: 1   MNQ-SKRDIRAFTKEELRRIFEENG----DQAFRGNQVYEWLWQKGVHSFEAMTNLPKAT 55

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R +L++HF I + ++   + S DGT K  +R     +     +E+V IP  +R T CVSS
Sbjct: 56  REMLDKHFVINHIKVDVMQRSDDGTIKNAVRLHDGLL-----VESVLIPTDTRTTACVSS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL CSFC T   K +RNL  +EI  QV +             I+       GR +S
Sbjct: 111 QVGCSLNCSFCATARLKRMRNLLPDEIFDQVRV-------------IDEQSKAFFGRPLS 157

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           NIV MGMGEPL N++NV K++   + + GL  S +RITLSTSG    I ++ + E+   L
Sbjct: 158 NIVFMGMGEPLMNYNNVLKAIDKITSTEGLGMSAKRITLSTSGVPKLIKKMADDEVKFKL 217

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+  + +R  ++P N ++PL  L +A +++   +   RIT+EYV+ KGIND  +D 
Sbjct: 218 AVSLHSAIDSVRTSIMPFNEQFPLSELREALQYWYQKT-KNRITYEYVVWKGINDQRKDV 276

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             LIK  K  P+K+NLI +NP    E+  +D + +  +   ++ +G +  +R  RG DI 
Sbjct: 277 EALIKFCKFAPSKVNLIEYNPIDDGEFQQADSRALTLYQTMLEEAGITVTVRHSRGKDID 336

Query: 360 AACGQLKSLSKR 371
           AACGQL + + +
Sbjct: 337 AACGQLANKTTK 348


>gi|256390734|ref|YP_003112298.1| ribosomal RNA large subunit methyltransferase N [Catenulispora
           acidiphila DSM 44928]
 gi|256356960|gb|ACU70457.1| radical SAM enzyme, Cfr family [Catenulispora acidiphila DSM 44928]
          Length = 395

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 185/368 (50%), Gaps = 23/368 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E ++AL ++G    H   R +Q+ +  +     D    SD+    R  L  
Sbjct: 47  RHLADLTSAERKKALSELG----HQGFRAAQVSQHYFGHLADDPAQWSDVPAAKREELAG 102

Query: 67  HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             +      + E+ + +GT RK L R           +E+V +  + R T+CVSSQ GC 
Sbjct: 103 ILTPRLLTPIREQTADNGTTRKTLWRLFD-----GATVESVLMRYRDRTTMCVSSQAGCG 157

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RN++  EI+ QV+          G   +    +P    ++SN+V M
Sbjct: 158 MNCPFCATGQAGLTRNMSTGEIVEQVVA---------GARTMARGEVPGGPGRVSNVVFM 208

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242
           GMGEPL N+  V  ++   ++    GL  S R IT+ST G VP I ++  E I V LA+S
Sbjct: 209 GMGEPLANYKAVIGAVRRLTEPVPDGLGLSARHITVSTVGLVPAIEKLTAEAIPVTLAVS 268

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVP+N ++ +  ++DA   Y  ++   R++ EY ++K IND    A  L
Sbjct: 269 LHAPDDELRDTLVPVNTRWNVSEVLDAAWRYASVTKR-RVSIEYALIKDINDQAWRADRL 327

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++L+     +NLIP NP PG ++  S  +D   F   ++  G    +R  RG DI  AC
Sbjct: 328 GRMLRNKLVHVNLIPLNPTPGSKWTASRPQDEAEFVRRLQEWGVPVTVRDTRGRDIDGAC 387

Query: 363 GQLKSLSK 370
           GQL +  K
Sbjct: 388 GQLAAAVK 395


>gi|168180611|ref|ZP_02615275.1| radical SAM enzyme, Cfr family [Clostridium botulinum NCTC 2916]
 gi|182668374|gb|EDT80353.1| radical SAM enzyme, Cfr family [Clostridium botulinum NCTC 2916]
          Length = 342

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 134/362 (37%), Positives = 205/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+++    EEL+E L+     +     R  Q++ WIY + I DF  M +I  + ++LL+ 
Sbjct: 2   ENILDFTLEELKEWLIS----KEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57

Query: 67  HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F +  P++V + +S D  T K+L  +    I     IE+V +  K   ++CVS+QVGC 
Sbjct: 58  NFYVGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    ++RNLT+ EIL Q++ A+  +G+                 +ISN+V+M
Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           G GEPL NF+NV K L + +    L+  +R ITLST G VP I  + ++   + LAISLH
Sbjct: 156 GSGEPLDNFENVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  + LR  ++PI  KY ++ L++AC +Y   +N  RITFEY ++KG NDS ++A  L  
Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLSI 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG    +NLIP N      Y  S  K+I +F   +K +G  + IR   G DI AACGQ
Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|302341935|ref|YP_003806464.1| radical SAM enzyme, Cfr family [Desulfarculus baarsii DSM 2075]
 gi|301638548|gb|ADK83870.1| radical SAM enzyme, Cfr family [Desulfarculus baarsii DSM 2075]
          Length = 359

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 129/363 (35%), Positives = 181/363 (49%), Gaps = 25/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  L  +  E+L   L  +G        R  Q+ +W++  G+ D   M+ +S+ +R  L
Sbjct: 3   QKPDLRDLTAEQLARLLADLG----EKPFRARQVSQWLHGHGVDDIADMTSLSKALRAKL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +    +          S DGTRK L             IE+V +PE    TLCVS+QVGC
Sbjct: 59  SAVGRLTAMGPAKVLQSADGTRKLLFLLED-----GQAIESVLMPEDGHHTLCVSTQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
              C FC T +  L RNL   EIL QVL AR L  +F               R ++N+V 
Sbjct: 114 RQGCRFCATASLGLRRNLRPAEILGQVLAARRLCDEF---------------RPLTNLVF 158

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N DNV  +L       GL  S+RR+T+ST G V  +  +       LAISL+
Sbjct: 159 MGMGEPLDNLDNVIVALGHILGEHGLQMSQRRVTVSTVGLVDRLPLLAAASPCALAISLN 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +  +R  ++P+ +++ LE L  A   YP L   RR+T EYV+L G+ND P  A  L +
Sbjct: 219 APNEHIRRQIMPVTKRFGLEALRRAIVDYP-LKPTRRVTLEYVLLGGVNDRPEHARELAR 277

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             KG+P K+NLI FNP     +   +   +  F   +     ++ +R  RG DI AACGQ
Sbjct: 278 WAKGLPVKVNLIAFNPHQAGPFQAPEAAAVEEFQNVLIEGHVTALLRRSRGQDIAAACGQ 337

Query: 365 LKS 367
           L +
Sbjct: 338 LVA 340


>gi|317489233|ref|ZP_07947750.1| cfr family radical SAM enzyme [Eggerthella sp. 1_3_56FAA]
 gi|325832221|ref|ZP_08165220.1| 23S rRNA m2A2503 methyltransferase [Eggerthella sp. HGA1]
 gi|316911634|gb|EFV33226.1| cfr family radical SAM enzyme [Eggerthella sp. 1_3_56FAA]
 gi|325486057|gb|EGC88511.1| 23S rRNA m2A2503 methyltransferase [Eggerthella sp. HGA1]
          Length = 353

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 196/373 (52%), Gaps = 31/373 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  + K S+      EL   + ++G P      RT Q+ +W+Y R    +  M+++   +
Sbjct: 6   MAAMDK-SIKTYSLPELASVMKELGQPA----FRTQQLQEWLYQRHASSYDEMTNLPGSL 60

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCV 118
           R  L + F +  P +VD +IS DGTRK+L+ F        + +ETV IP +   R T+C 
Sbjct: 61  RATLAERFPLTMPTVVDRQISKDGTRKYLVEF-----DDGIRVETVGIPSRNGDRLTVCF 115

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           S+Q GC + C+FC TG +   RNLT  EI+ QVL+ +                   +G++
Sbjct: 116 STQAGCPIACAFCATGQEGFARNLTPGEIVDQVLIVQE-----------------DMGKR 158

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
           ++N V MG GEP  N+DN   +L I +   GL    R I++ST G +P + R  EE    
Sbjct: 159 VTNAVGMGQGEPFLNYDNTMAALRILNHKKGLEIGARHISVSTCGILPGLERFSEEPEQF 218

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA    +R++++P   +Y L  L +A ++Y   +N  R+T EY+M++G+ND+P 
Sbjct: 219 TLAVSLHAARQPIRDLIMPNVARYELPSLKEALQNYVAKTNR-RVTLEYIMIEGVNDAPA 277

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
           D   L K    +   +NLIP N   G E+  S  + I  +   I + G  + +R  RG D
Sbjct: 278 DLKALQKFCSNLLCHVNLIPINAIEGSEFQPSSPETINLWLSEISKKGTEATLRDSRGSD 337

Query: 358 ILAACGQLKSLSK 370
           I  ACGQLK+  K
Sbjct: 338 ISGACGQLKNTFK 350


>gi|164687799|ref|ZP_02211827.1| hypothetical protein CLOBAR_01443 [Clostridium bartlettii DSM
           16795]
 gi|164603074|gb|EDQ96539.1| hypothetical protein CLOBAR_01443 [Clostridium bartlettii DSM
           16795]
          Length = 343

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 198/368 (53%), Gaps = 30/368 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L     EEL+E + +IG        R +QI+ WIY +G + F  M +I + +R  L
Sbjct: 4   QKIALKNFTEEELKEFMKEIG----EKPFRGTQIYSWIY-KGAKTFDDMKNIPKSLREKL 58

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +   I   E      S  D T+K+L       I     IE+V +    R T C+S+QVG
Sbjct: 59  EKVSYIGNLETELVLKSKVDKTKKYLFALNDGNI-----IESVMMDYDDRVTACISNQVG 113

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +  + L+RNL   EIL Q++  +                    G+++SN+V
Sbjct: 114 CRMGCKFCASTMEGLIRNLEPWEILDQIIKIQE-----------------DTGKRVSNLV 156

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG GEPL NF+N K+ L I +D  GL+   R ITLST G +P +  + +  I + LA+S
Sbjct: 157 LMGSGEPLDNFENTKQFLKIVNDKNGLNIGYRHITLSTCGVIPKMYELADLNIPINLALS 216

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+  ++ R  ++P+ + Y ++ LI AC++Y   +N  R+TFEY ++KG+NDS  ++  +
Sbjct: 217 LHSPFDEKRAEIMPVAKAYKVKDLIKACQNYIDKTNR-RVTFEYSLIKGVNDSKAESDEI 275

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LKG+   +NLIP N     ++   D+  I  F + ++++   + +R   G DI  AC
Sbjct: 276 SRLLKGMLCHVNLIPINKVEERDFERPDKTYIYKFRDALEKNKIPTTVRNSMGSDIGGAC 335

Query: 363 GQLKSLSK 370
           GQL+   K
Sbjct: 336 GQLRRKHK 343


>gi|153939514|ref|YP_001391802.1| radical SAM protein [Clostridium botulinum F str. Langeland]
 gi|205829628|sp|A7GG92|RLMN_CLOBL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|152935410|gb|ABS40908.1| radical SAM enzyme, Cfr family [Clostridium botulinum F str.
           Langeland]
 gi|295319828|gb|ADG00206.1| radical SAM enzyme, Cfr family [Clostridium botulinum F str.
           230613]
          Length = 342

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 134/362 (37%), Positives = 204/362 (56%), Gaps = 29/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E+++    EEL+E L+     +     R  Q++ WIY + I DF  M +I  + ++LL+ 
Sbjct: 2   ENILDFTLEELKEWLIS----KEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57

Query: 67  HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F +  P++V + +S D  T K+L  +    I     IE+V +  K   ++CVS+QVGC 
Sbjct: 58  NFYVGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    ++RNLT+ EIL Q++ A+  +G+                 +ISN+V+M
Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           G GEPL NF NV K L + +    L+  +R ITLST G VP I  + ++   + LAISLH
Sbjct: 156 GSGEPLDNFQNVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  + LR  ++PI  KY ++ L++AC +Y   +N  RITFEY ++KG NDS ++A  L  
Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLST 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG    +NLIP N      Y  S  K+I +F   +K +G  + IR   G DI AACGQ
Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|307330070|ref|ZP_07609221.1| radical SAM enzyme, Cfr family [Streptomyces violaceusniger Tu
           4113]
 gi|306884331|gb|EFN15366.1| radical SAM enzyme, Cfr family [Streptomyces violaceusniger Tu
           4113]
          Length = 368

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 183/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E  EA+  +G        R SQ+ +  + R + D    SDI    R  L  
Sbjct: 20  RHLADLTPAERREAVAALG----EKPFRASQVSRHYFARYVDDPAQWSDIPAAAREKLAA 75

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   ISCD   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  GLLPELMSVV-RHISCDDDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    IP    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEIPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGVSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   R++ EY ++K IND    A  
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RVSIEYALIKDINDQAWRADL 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F   ++  G    +R  RG +I  A
Sbjct: 300 LGRLLKGRRVHVNLIPLNPTPGSKWTASRPEDEKAFVAALEAHGVPVTVRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAASER 368


>gi|269926508|ref|YP_003323131.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790168|gb|ACZ42309.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 371

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 131/363 (36%), Positives = 199/363 (54%), Gaps = 27/363 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +SL+ +  +EL E +     P+     R  Q+W+ IY +   D + M+ + + +R +L+ 
Sbjct: 19  KSLLDLSLQELREWIRLRDYPE----YRAVQVWQAIYRQLEVDPEKMTSLPKALREVLSA 74

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGC 124
            F       V   ++  G T K L +           IE+V +     R T+CVSSQ GC
Sbjct: 75  EFPFPNITPVRTFVADGGDTEKVLFQLED-----GNAIESVLMEYMDGRATVCVSSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C+FC TG     RNL+A EI+ Q+L     L D               G++++NIV 
Sbjct: 130 AIGCTFCATGLGGFYRNLSAGEIVYQILYFSKKLRD--------------KGKRLTNIVY 175

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
           MGMGEPL N D V +S+    +  G++FS RRIT+ST+G V  I R    ++ V LAISL
Sbjct: 176 MGMGEPLANLDAVWRSVENLHEPTGMNFSARRITISTAGLVHQIDRFPPTDLQVNLAISL 235

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++DLR  ++PINR++P+  LI + + Y   ++  RITFEYV++ G N S   A +L 
Sbjct: 236 HAPNDDLRTSIMPINRRWPISELIASAKRYVERTHR-RITFEYVLIAGCNSSKEHARDLS 294

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L+G+   +NLIP N  PG  +     +++ TF + +  +G    +R  RG DILAACG
Sbjct: 295 NLLRGLLCHVNLIPLNRVPGSPFEPPSTEEVNTFRDILLSAGIPCTVRLERGADILAACG 354

Query: 364 QLK 366
           QL+
Sbjct: 355 QLR 357


>gi|21672555|ref|NP_660622.1| hypothetical protein BUsg275 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091617|sp|Q8K9P5|RLMN_BUCAP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|21623181|gb|AAM67833.1| hypothetical 43.1 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 363

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/363 (42%), Positives = 216/363 (59%), Gaps = 24/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+ + R+E+E  LL +G      +  T Q+ KWIY R   +F  MS++ +++R  L
Sbjct: 13  DKINLLDLNRKEIEIFLLSLG----AKKFVTDQLMKWIYNRHCNNFNLMSNLKKDIRKKL 68

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N+   I     ++EKIS DGT KW+            +IET+YIPEK R TLCVSSQ+GC
Sbjct: 69  NERSYIFASNFIEEKISYDGTVKWI------TSIDKQKIETIYIPEKKRATLCVSSQIGC 122

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C FC TG Q   RNL   EI+ Q+  A  +L +                  I+NIV 
Sbjct: 123 SLKCKFCATGQQGFNRNLKVSEIISQIWQANKILKE------------KKNNSTITNIVF 170

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D  G   SKRRITLSTSG VP + ++ ++I V LAISLH
Sbjct: 171 MGMGEPLLNLNNVISAIKIILDKNGFGLSKRRITLSTSGIVPALNKLIKKIDVSLAISLH 230

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302
           A ++ +RN ++PIN KY ++  +++   Y   S+A R  +T EYVML+GIND    A  L
Sbjct: 231 APNDFIRNSIMPINMKYNIKSFLNSVSKYLKHSHANRGGVTVEYVMLRGINDLNEHAEEL 290

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ILK IP+KINLIP+N +    ++CS +  I  F+  +++ G+++ IR  RG DI AAC
Sbjct: 291 GNILKKIPSKINLIPWNFFKNANFICSSKNRINIFANILRKKGFNTTIRKNRGQDIGAAC 350

Query: 363 GQL 365
           GQL
Sbjct: 351 GQL 353


>gi|121533699|ref|ZP_01665526.1| radical SAM enzyme, Cfr family [Thermosinus carboxydivorans Nor1]
 gi|121307690|gb|EAX48605.1| radical SAM enzyme, Cfr family [Thermosinus carboxydivorans Nor1]
          Length = 350

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 207/365 (56%), Gaps = 26/365 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K ++ G   +E+ + + + G+     + R  QI +WIY RG+  F  M+++  + R LL 
Sbjct: 2   KTNIFGYFAQEISDLIAQYGLE----KYRGRQIAEWIYRRGVSRFADMTNLPLKKRDLLA 57

Query: 66  QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++F+I    ++  + S DG T K+LL+F          +ETV +      +LCVS+QVGC
Sbjct: 58  ENFTIDTVYVMAAQHSADGKTSKFLLKFTD-----GAAVETVLMRHSYGNSLCVSTQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +  Q + RNL+  EIL Q +   +L              + S   ++++IV+
Sbjct: 113 GMGCIFCASTLQGVARNLSGGEILAQAIYVNNL--------------LLSAQTRLNSIVI 158

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG GEPL N+DNV + + +  +   L+ S R ITLST G VP + ++  E + + LA+SL
Sbjct: 159 MGSGEPLANYDNVLRFIRLCHEPYCLNLSYRSITLSTCGLVPEMRKLAAEGLPITLAVSL 218

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N+LR+ ++PINR+YP+E +++A  +Y   +  RR+T+EY ++KG+ND    A  L 
Sbjct: 219 HAPNNELRSQIMPINRRYPIEEVVEAADYYAA-TTGRRVTYEYTLIKGVNDGLEQAYELA 277

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L G  A +NLI  N  P    LC D+K I  F + + R   ++ +R   G DI AACG
Sbjct: 278 RLLAGRLANVNLIAVNAVPERGLLCPDEKQIAAFEQTLLRQNINTTVRRKMGADIQAACG 337

Query: 364 QLKSL 368
           QL+  
Sbjct: 338 QLRKK 342


>gi|302671345|ref|YP_003831305.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
           B316]
 gi|302395818|gb|ADL34723.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
           B316]
          Length = 352

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 201/375 (53%), Gaps = 33/375 (8%)

Query: 1   MNFLK----KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI 56
           M++++    K  +  +  +EL   + + G P      R  Q+++W++V+  RD+  M++I
Sbjct: 1   MSYIQGINGKIDIKSLTLDELTILIKEAGEPA----FRAKQLYEWMHVKLARDYDEMTNI 56

Query: 57  SQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGT 115
            + ++    + F  +  +    + S  D T+K+L       +     IE+V++  K   +
Sbjct: 57  PKSLKEKCREMFDFVSLKSELVQESKLDDTKKFLFALSDGNM-----IESVFMKYKFGVS 111

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           +C+SSQVGC + C FC +    +VRNL   E+L Q+     + G+               
Sbjct: 112 VCISSQVGCRMGCKFCASTIDGVVRNLLPSEMLDQIYAISRITGE--------------- 156

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE- 234
             K+  +V+MG GEPL N+DN+ + + + ++  GL+ S+R +T+ST G VPNI R+ ++ 
Sbjct: 157 --KVGRVVVMGSGEPLDNYDNLLRFIDLLTNEDGLNMSQRNLTVSTCGIVPNILRLADKN 214

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           + + LA+SLHA +ND R  L+PI  KY +  ++DACR Y   +  + +TFEY ++ G+ND
Sbjct: 215 LAINLALSLHASNNDKRKELMPIANKYEIHEVLDACRTYFDKTGRQ-LTFEYSLVAGVND 273

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           +  DA  L  +L G    +NLIP NP    ++  +D+   + F   +++S  +  IR   
Sbjct: 274 TDEDARELTDLLSGFNCVVNLIPVNPIKERDFKPTDRAGALGFKNKLEKSRINVTIRREM 333

Query: 355 GLDILAACGQLKSLS 369
           G DI  ACGQL+   
Sbjct: 334 GRDIDGACGQLRRRH 348


>gi|27904760|ref|NP_777886.1| hypothetical protein bbp265 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|46397192|sp|Q89AK8|RLMN_BUCBP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|27904157|gb|AAO26991.1| conserved hypothetical protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 373

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/368 (41%), Positives = 211/368 (57%), Gaps = 23/368 (6%)

Query: 1   MNFLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
           M  +K K +L+    + +++    IG     +  R  Q+ KWIY     DF  M++IS +
Sbjct: 10  MQKIKLKTNLLNFDLQSMKKFFCSIG----ELEFRAQQVMKWIYQHYCDDFNKMTNISLQ 65

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           +R  L+    I  P+ ++ K+S DGT KW        + G   IETV IP+  R TLC+S
Sbjct: 66  LRKKLSTLCCITPPKFLNHKVSVDGTMKW------SVVIGNQCIETVCIPKNQRTTLCIS 119

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ+GCSL CSFC TG Q   +NL   EI+ QV   + L+               ++  KI
Sbjct: 120 SQLGCSLACSFCLTGQQGFNKNLNVSEIIGQVWYIQKLI----------YFSKINITNKI 169

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+V+MGMGEPL N  NV  +L I  D  GL+ SK  ITLST+G VP + ++   I V L
Sbjct: 170 TNVVLMGMGEPLLNLSNVVHALRIMLDEFGLNMSKNHITLSTAGIVPALKKLHTMIDVSL 229

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPR 297
           A+SLHA +N +RN L+PIN+KY +E ++ A + Y   SN   +R+T EYVML GIND+  
Sbjct: 230 AVSLHASNNTIRNQLMPINKKYNIESVLCAIKKYLYYSNANKKRVTIEYVMLSGINDAAY 289

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L  +LK IP KINLIP+N + G  Y+CS+   I  F+  + + G    IR  RG D
Sbjct: 290 HAEELFNLLKSIPHKINLIPWNHFSGSNYICSNDITINNFANILIKKGCIVTIRKIRGYD 349

Query: 358 ILAACGQL 365
           I AACGQL
Sbjct: 350 INAACGQL 357


>gi|222099877|ref|YP_002534445.1| Radical SAM enzyme, Cfr family [Thermotoga neapolitana DSM 4359]
 gi|254807220|sp|B9K7Z6|RLMN_THENN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|221572267|gb|ACM23079.1| Radical SAM enzyme, Cfr family [Thermotoga neapolitana DSM 4359]
          Length = 343

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 131/366 (35%), Positives = 205/366 (56%), Gaps = 30/366 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+ +  +EL   +  +G+     R R  QI  W++ + + +F  M+++S++ R LL +
Sbjct: 2   KNLLDLSYDELVSEITSLGLE----RYRADQILDWVFDKKVNNFDEMTNLSKQHRALLKE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           HF+I + +++++++S  DGT K+L             IE+V I    R T C+S+QVGC 
Sbjct: 58  HFTIPFLKLLEKRVSKIDGTTKFLWELED-----GNTIESVMIFHPGRITACISTQVGCP 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TG    VRNLT  EI+ Q+L                       G+KI N+V M
Sbjct: 113 VGCTFCATGMSGFVRNLTTGEIVSQILSMEK-----------------EEGKKIGNVVYM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N++N  KS+ I +     +   RRIT+ST G    I ++ +E + V LA+SLH
Sbjct: 156 GMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPEKIIQLADEGLDVKLALSLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N  R+ LVP+NRKY +E +++A + Y   +   R+T EYV+++G+ND   DA  L +
Sbjct: 216 APTNFKRDQLVPLNRKYSVEEILNAIKVYQMKTGK-RVTIEYVLIRGVNDEISDAKKLAE 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ILKG+   +NLIP NP          ++ I+ F   +  +G  + IR  +G DI AACGQ
Sbjct: 275 ILKGLKVFVNLIPVNPTV-AGLSKPSRQRILAFKRILLENGIEAEIRQEKGSDIEAACGQ 333

Query: 365 LKSLSK 370
           L+   K
Sbjct: 334 LRLKRK 339


>gi|242310237|ref|ZP_04809392.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523534|gb|EEQ63400.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 346

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 203/368 (55%), Gaps = 28/368 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+++ G+  EEL ++L   G P    + R  QI+ W+YVR   +F  M ++ + +R  
Sbjct: 1   MDKKNIFGLTLEELTQSL--NGFP----KFRAKQIYHWLYVRYENNFDKMENLPKNLREF 54

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQV 122
           L Q F+     I  ++ S DG+ K+L R            E V++  K  + TLC+SSQ+
Sbjct: 55  LKQDFTGDLVSIAKKEQSSDGSVKYLFRTADNLT-----YEAVFLKMKEDKFTLCLSSQI 109

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + CSFC T     VRNL+A E++ QV   +                      K  NI
Sbjct: 110 GCKVGCSFCLTAKGGFVRNLSAGEMVYQVFAIKKDQNI--------------PSNKAVNI 155

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N +NV K + I S+  GLS S+RR T+STSG  P I ++G   +GV LAI
Sbjct: 156 VYMGMGEPLDNLENVSKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALNLGVQLAI 215

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV ++LR  L+PIN+ Y ++ +ID    +P +   +R+ FEY+M+  +NDS   A  
Sbjct: 216 SLHAVDDELRTKLMPINKAYNIQSVIDEVAIFP-IDTRKRVMFEYLMIDEVNDSLECAKK 274

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+ +L  I AK+NLI FNP  G  Y   +++ +  F E + + G    IR  +GLDI AA
Sbjct: 275 LVALLNKIKAKVNLIYFNPHEGSPYKRPNKEKVEAFREFLLKKGLLCTIRESKGLDISAA 334

Query: 362 CGQLKSLS 369
           CGQL+   
Sbjct: 335 CGQLREKE 342


>gi|156743521|ref|YP_001433650.1| ribosomal RNA large subunit methyltransferase N [Roseiflexus
           castenholzii DSM 13941]
 gi|205829869|sp|A7NPY6|RLMN_ROSCS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|156234849|gb|ABU59632.1| radical SAM enzyme, Cfr family [Roseiflexus castenholzii DSM 13941]
          Length = 399

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 131/392 (33%), Positives = 196/392 (50%), Gaps = 42/392 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L  +   E+E  L   G P      R  Q+++ +YV        M+D+   +R  L  
Sbjct: 13  PNLYDLSLAEMERLLTDWGQPT----YRARQVFRQLYVNLADTPLAMTDLPLALRERLAN 68

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              +        + + +G TRK L R P   +     +E+V +    R T+CVS+Q GC+
Sbjct: 69  ETRLAPVTPEQVQTADNGLTRKALFRLPNGAL-----VESVLMIYLDRATVCVSTQAGCA 123

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--------- 176
           + C FC TGT  L+RNL+  EI+ QV+ A   +    G      M  P            
Sbjct: 124 MGCVFCATGTLGLLRNLSPGEIVAQVVWAAREMRRLAGRPPRPTMRQPEDDAWWSPDDLE 183

Query: 177 ------------RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
                         ++NIV MGMGEP   +D   +++ I  D  GL+   R +T+ST G 
Sbjct: 184 NDAPSVPEVSSVSHVTNIVFMGMGEPFATYDRWWRAVEIIHDPRGLNIGARSMTVSTVGL 243

Query: 225 VPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
           VP I R+  E + + LA+SLHA  +DLR+ L+PINR+YPL +L+DA R Y   +   R++
Sbjct: 244 VPGIRRLATETLPINLAVSLHAPDDDLRSALMPINRRYPLAVLLDATRDYLAATGR-RVS 302

Query: 284 FEYVMLKGINDSPRDALNLIKILKG---------IPAKINLIPFNPWPGCEYLCSDQKDI 334
           FEYV+L+G ND P  A  L  +L+G             +NLIP+NP PG     S+++ +
Sbjct: 303 FEYVLLQGKNDEPEHAAKLAALLRGEAGPAGLPLHLVHVNLIPWNPVPGMPLGRSERRRV 362

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +TF   ++  G +  +R  RG+ I AACGQL 
Sbjct: 363 LTFQRILRERGIACTVRVERGVAIAAACGQLA 394


>gi|255693933|ref|ZP_05417608.1| radical SAM enzyme, Cfr family [Bacteroides finegoldii DSM 17565]
 gi|260620244|gb|EEX43115.1| radical SAM enzyme, Cfr family [Bacteroides finegoldii DSM 17565]
          Length = 344

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/367 (35%), Positives = 196/367 (53%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MSKYPLLGMTLVELQALAKRLGMPS----FAAKQIASWLYEKKVTSIDEMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     VDE  S DGT K+L R     +G    +E+VYIP+  R TLCVSSQVG
Sbjct: 57  LKQNYEVGVFPPVDEMRSVDGTVKYLYR-----VGDNHFVESVYIPDDDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                          K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTANLTANQIINQI-------------------HSLPERDKLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L + +   G ++S +RITLST G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALEVLTAPYGYAWSPKRITLSTVGLRKGLRRFIEESDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R+ L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPVAAQRSELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQIYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  +INLI F+  PG     +D   +  F + +   G  + IR  RG DI AACG
Sbjct: 272 KLLRGLDCRINLIRFHAIPGVNLEGADMDTMTRFRDYLTSHGLFTTIRASRGEDIFAACG 331

Query: 364 QLKSLSK 370
            L +  +
Sbjct: 332 MLSTAKQ 338


>gi|282900428|ref|ZP_06308378.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194741|gb|EFA69688.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 360

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 186/366 (50%), Gaps = 31/366 (8%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
           G   +EL   + + G P      R  Q+  WIY  G+     +S   +  R  +    SI
Sbjct: 22  GASVDELTTWVQQQGQPG----YRGKQLHNWIYHHGVHKISDISVFPKTWREQVAD-VSI 76

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
               I  +  + DGT K+LL+     I     IETV IP   R T+CVS+QVGC + C F
Sbjct: 77  GRSSIDHQSFATDGTEKYLLQLADGEI-----IETVGIPSDKRLTVCVSTQVGCPMACDF 131

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TG     RNL   EI+ QVL  +                  +  +++S++V MGMGEP
Sbjct: 132 CATGKGGFKRNLNRGEIVDQVLTVQE-----------------NFQQRVSHVVFMGMGEP 174

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
           L N +NV  +L   +    L   +R +T+ST G    I ++ E  + V LA+SLHA +  
Sbjct: 175 LLNTENVILALKCLNQD--LGIGQRSLTVSTVGIRDRIRQLAEHHLQVTLAVSLHAPNQK 232

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           LR  ++P  + YP+E L+  CR Y  ++   R+TFEY++L G+ND P  AL L + L+G 
Sbjct: 233 LREQIIPSAKTYPIEQLLAECREYVEITGR-RVTFEYILLAGVNDLPEQALELSQRLRGF 291

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
            + +NLIP+NP    +Y   ++  I  F   +++   +  IR  RGL++ AACGQL+   
Sbjct: 292 QSHVNLIPYNPIQEADYQRPNRDRIHAFVNILQQQKIAVSIRYSRGLEVDAACGQLRKRQ 351

Query: 370 KRIPKV 375
             I + 
Sbjct: 352 NVIKQK 357


>gi|31789377|gb|AAP58494.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
          Length = 413

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/392 (39%), Positives = 216/392 (55%), Gaps = 37/392 (9%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M+   +  +    R ELE  L ++G P    R    QI++W+Y RGI DF  MSD+ +++
Sbjct: 43  MSNHTRTDIAESERHELEHTLERLGHP----RFHARQIFQWVYKRGITDFALMSDLGRDL 98

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------- 112
           R  L +   I  P +  ++ S DGT K+LLR           IE+V+IP+++        
Sbjct: 99  RAQLAESCVITTPVVERQERSQDGTVKFLLRL-----ADGRHIESVFIPDETPAGPDGSP 153

Query: 113 ---RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
              R T CVS+QVGC++ C+FC TG   + R+LTA EI  QV +    LG          
Sbjct: 154 RAARITFCVSTQVGCAMKCAFCLTGKMGIDRSLTAGEIAGQVRVLARELGFLETR----- 208

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229
                      NIV+MGMGEPL N++   K+L + +D  G + S RR+TLST G +P + 
Sbjct: 209 ----------FNIVLMGMGEPLHNYEETMKALRVLADEHGFAMSARRMTLSTVGVLPALE 258

Query: 230 RVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
           R+  E +   LAISLHA + D R++LVPINRKY L+ L+DACR +P L    RITFEYV+
Sbjct: 259 RLATEPLMPNLAISLHATTEDQRDLLVPINRKYGLKELLDACRRFP-LKRRERITFEYVL 317

Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348
           L+ +ND+P DA  L+K+L GI  K+NL+P N   G  +       + +F+  +   G   
Sbjct: 318 LREVNDTPEDARRLVKLLHGIKGKVNLLPLNEAAGIPFERPSDDRVNSFARILADHGIPV 377

Query: 349 PIRTPRGLDILAACGQLKSLSKRIPKVPRQEM 380
            +R  RG DI AACGQL + S R     R  M
Sbjct: 378 SVRKSRGRDIRAACGQLITESDRKAPGARLAM 409


>gi|163786382|ref|ZP_02180830.1| hypothetical protein FBALC1_14392 [Flavobacteriales bacterium
           ALC-1]
 gi|159878242|gb|EDP72298.1| hypothetical protein FBALC1_14392 [Flavobacteriales bacterium
           ALC-1]
          Length = 346

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 203/368 (55%), Gaps = 24/368 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            +KK+ +  + +E+L +  +K G        R +Q+++W++ +    F+ M++IS E R 
Sbjct: 2   EVKKKDIRALTKEQLRDFFVKQGDKA----FRGNQVYEWLWQKSAHSFEDMTNISLETRQ 57

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +L  +F I + ++   + S DGT K  +R     I     +E+V IP  +R T CVSSQV
Sbjct: 58  MLEANFVINHIKVDQMQRSSDGTIKNAVRLHDDLI-----VESVLIPTATRTTACVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GCSL C FC T   K +RNL  +EI  QV+              I+        R +SNI
Sbjct: 113 GCSLDCKFCATARLKRMRNLNPDEIYDQVVA-------------IDNESRLYHNRPLSNI 159

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V MGMGEPL N++NV K++   +   GL  S +RI +STSG    I ++ ++ +   LA+
Sbjct: 160 VFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRIVVSTSGVPKMIKKMADDKVKFKLAV 219

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+  +D+R  ++P N  +PL  L +A +++   +   RIT+EYV+  GIND  +D   
Sbjct: 220 SLHSAIDDVRTSIMPFNATFPLNDLREALQYWYAAT-KNRITYEYVVWDGINDKRKDVDA 278

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L++  K  P+K+NLI +NP    E+  ++ K +  +   ++ +  +  +R  RG DI AA
Sbjct: 279 LVEFCKFAPSKVNLIEYNPIDDGEFQQANSKALDMYVNVLEANNITVTVRRSRGKDIDAA 338

Query: 362 CGQLKSLS 369
           CGQL + S
Sbjct: 339 CGQLANKS 346


>gi|94987122|ref|YP_595055.1| ribosomal RNA large subunit methyltransferase N [Lawsonia
           intracellularis PHE/MN1-00]
 gi|123082152|sp|Q1MQJ3|RLMN_LAWIP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|94731371|emb|CAJ54734.1| predicted Fe-S-cluster redox enzyme [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 358

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 146/367 (39%), Positives = 206/367 (56%), Gaps = 25/367 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +   E E  ++      +    R  QIW+W++ + I D + M+++ Q++R  L  
Sbjct: 2   INLLNITYPEFESLIV---TTLQEKTYRAMQIWQWVWQKQITDIESMTNLPQKIRASLTA 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQ 121
              I  PEIV  + S DGT+K+LLR     +     IETV IP        R T C+SSQ
Sbjct: 59  LIKINLPEIVTIQQSSDGTKKFLLRLSDGAL-----IETVLIPSIDKAGNIRITQCLSSQ 113

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGCS+ C+FC T T   +RNLTA EI+ QVLLA+  L D    + I           I N
Sbjct: 114 VGCSMGCTFCSTATMGFIRNLTAGEIVSQVLLAKLHLNDNKPDKPI-----------IRN 162

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MGMGEPL N   + ++L I     GL+FS RRIT+ST G    I  + E     LA+
Sbjct: 163 IVFMGMGEPLLNLTELTRALHILHSEKGLNFSARRITVSTCGIKKGIQALSENGLAFLAL 222

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA + +LR+ ++P   K+ L+ LID  ++Y  L    +ITFEY++L GINDSP  A  
Sbjct: 223 SLHASNQELRSTIMPKAAKWDLKELIDTLKNY-SLKKREKITFEYLLLGGINDSPEHAKE 281

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L K++  I  K+NLIP+NP  G  YL   +++I+ F + +   G  + +R  +G DI AA
Sbjct: 282 LAKLITDIKGKLNLIPYNPAQGQPYLKPTEENILKFQKVLWSKGIVTILRKSKGQDINAA 341

Query: 362 CGQLKSL 368
           CGQLK+ 
Sbjct: 342 CGQLKTT 348


>gi|205829715|sp|Q8YZV0|RLMN_ANASP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 355

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 126/365 (34%), Positives = 183/365 (50%), Gaps = 31/365 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+G    EL   + + G P      R  Q+  WIY +G+R    +S  S++ R  +   
Sbjct: 21  PLLGASVTELTSWVQQQGQPA----YRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVAD- 75

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             I    I    ++ DGT K+LL+     I     +E V IP   R T+CVS+QVGC + 
Sbjct: 76  VPIGRSTIHHRSVASDGTVKYLLQLSDGEI-----VEAVGIPTDKRLTVCVSTQVGCPMA 130

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG     RNL   EI+ QVL  +                     +++S++V MGM
Sbjct: 131 CDFCATGKGGYKRNLERHEIVDQVLTVQE-----------------DFQQRVSHVVFMGM 173

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N +NV   L   +  +G    +R +TLST G    I+ + E  + V LA+SLHA 
Sbjct: 174 GEPLLNTENVLAGLRSLNQDVG--IGQRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAP 231

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +  LR  L+P  R Y +E L+  CR Y  ++   RI+FEY++L G+ND P  AL L K L
Sbjct: 232 NQALREQLIPSARSYHIEDLLAECREYVAITGR-RISFEYILLAGVNDLPEHALELSKHL 290

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +G    +NLIP+N     +Y       I  F   +++   +  +R  RGL+  AACGQL+
Sbjct: 291 RGFQNHVNLIPYNSIDEVDYKRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLR 350

Query: 367 SLSKR 371
           + + R
Sbjct: 351 TKASR 355


>gi|31789482|gb|AAP58595.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
          Length = 396

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 148/353 (41%), Positives = 207/353 (58%), Gaps = 23/353 (6%)

Query: 31  VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL 90
            R   +QI++WI+ R     +GM+D+S+ +R  L+  F++  P IV ++ S DGTRK +L
Sbjct: 62  PRFHATQIYRWIHRRAATSVEGMTDLSKALRTRLDHEFTLSTPRIVGDETSADGTRKLVL 121

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
               R       IE+V+IP+    T CVS+QVGC++ C FC TG   LVR+LTA EI  Q
Sbjct: 122 ELADRR-----RIESVFIPDTPAMTFCVSTQVGCAMACGFCLTGKMGLVRHLTAGEIAGQ 176

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           V +  S  G                     NIV+MGMGEPL N+DN  K+L +     GL
Sbjct: 177 VRVLASATGLLDQS---------------FNIVLMGMGEPLHNYDNTMKALRMLHAEAGL 221

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           + S RR+TLST G VP + R+ +E +   LA+SLHA +++ R  LVP NRKYPL  ++DA
Sbjct: 222 AVSPRRVTLSTVGIVPGLERLAKESLMPNLAVSLHATTDEQRTALVPPNRKYPLAAILDA 281

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
           CR +P L    RITFEYV+L+G+ND+P DA  L+++L GI +K+NLIP NP PG  +   
Sbjct: 282 CRAFP-LKKRNRITFEYVLLEGVNDTPEDAKRLVRLLSGIKSKVNLIPLNPAPGIPFSRP 340

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQI 382
               +  F++ + R+  +  +R  RG DI AACGQL        K   Q+M +
Sbjct: 341 PDARVDRFADVLARAHLTVSVRKSRGRDIRAACGQLIVEGG-ASKTAAQQMAL 392


>gi|154147902|ref|YP_001407255.1| radical SAM protein [Campylobacter hominis ATCC BAA-381]
 gi|205829692|sp|A7I414|RLMN_CAMHC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|153803911|gb|ABS50918.1| radical SAM enzyme, Cfr family [Campylobacter hominis ATCC BAA-381]
          Length = 358

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 136/381 (35%), Positives = 209/381 (54%), Gaps = 42/381 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+    +EL E L          + R  QI++WIY + + DF  M ++  ++R  L  
Sbjct: 2   KNLLDFSLDELGELLK--------PKFRAKQIYEWIYHKNVDDFLQMKNLPLQMREDLAN 53

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
            F I    +   + S DG++K+L             IE+V +P K              R
Sbjct: 54  EFYIGGLNVSKCEQSVDGSKKYLFELKD-----GKTIESVLLPMKDEITDENGEILRHKR 108

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC + C+FC T     VRNL+A EI+ Q+ L + +                
Sbjct: 109 YTICVSSQVGCKIGCAFCLTAKGGFVRNLSAGEIVEQIRLIKKIN--------------K 154

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  N+V MGMGEPL N +NV K++ I   + GL+ S RR T+STSG    I ++GE
Sbjct: 155 IPYERRINVVYMGMGEPLNNLENVAKAIKILIQNEGLAISPRRQTISTSGLSSQIKKLGE 214

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV+++LR  L+PINR Y +  ++ A R +P +   +R+ FEY+++ G+
Sbjct: 215 MNLGVLLAISLHAVNDELREKLMPINRAYNIASIMQAVREFP-IDLRKRVMFEYLVMDGV 273

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           NDS  DA  L+++L GI AK+NLI FNP  G ++    +++++ F + +   G +  IR 
Sbjct: 274 NDSINDAKTLVRLLNGIKAKVNLIYFNPHIGSKFHRPSEENMIKFQDYLSVHGITCTIRQ 333

Query: 353 PRGLDILAACGQLKSLSKRIP 373
            +GLDI AACGQL+  + +  
Sbjct: 334 SKGLDISAACGQLREKNLKEK 354


>gi|326203176|ref|ZP_08193042.1| radical SAM enzyme, Cfr family [Clostridium papyrosolvens DSM 2782]
 gi|325986822|gb|EGD47652.1| radical SAM enzyme, Cfr family [Clostridium papyrosolvens DSM 2782]
          Length = 349

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 135/362 (37%), Positives = 196/362 (54%), Gaps = 30/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ M  EELE+ L ++G      + R  QI+KW    GIR F  M++IS+++R  L +
Sbjct: 2   INLMDMTLEELEQMLSEMG----QQKFRAKQIFKWT-NSGIRSFDDMTNISKQLRDELVK 56

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              I   +I D+  S  D T K+L       I     IE+V +  K   T C+SSQ GC 
Sbjct: 57  VTKISRIKIADKLQSQIDSTVKYLFELEDGNI-----IESVIMEYKHGFTACISSQAGCR 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +   +  RNLT  E+L QV+  +                    G +I +IV+M
Sbjct: 112 MGCKFCASTGAEFSRNLTPGEMLDQVMTMQE-----------------DSGNRIGHIVLM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEPL N++NV K L I +   GL    R I+LST G VP + ++ +E I + L++SLH
Sbjct: 155 GIGEPLDNYENVIKFLKIVNHPDGLMIGMRNISLSTCGVVPRMLQLAQENIPITLSVSLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  +D R+ ++P+N+ Y ++ LI AC+ Y   S  RRITFEY M+ G NDS +DA  L  
Sbjct: 215 SARDDKRSAMMPVNKAYCIDKLISACKIYTE-STKRRITFEYAMISGENDSEQDARELAG 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG+   +NLIP N   G  Y  S +  I  F   ++  G  + +R   G DI AACGQ
Sbjct: 274 LLKGMLCHVNLIPVNTVTGNGYKKSSRIHIDKFKNILESKGIETTVRRELGSDINAACGQ 333

Query: 365 LK 366
           L+
Sbjct: 334 LR 335


>gi|257469926|ref|ZP_05634018.1| florfenicol resistance protein [Fusobacterium ulcerans ATCC 49185]
 gi|317064156|ref|ZP_07928641.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313689832|gb|EFS26667.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 350

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 133/371 (35%), Positives = 205/371 (55%), Gaps = 28/371 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + ++ELEE ++ +G+     +    QI+ W++ + +RD   ++++S + R LL
Sbjct: 3   EKINLLNLNQQELEELVISLGM----KKFYGKQIFNWLHQKIVRDLNEITNLSLKDRELL 58

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQV 122
           ++   I +  ++ +++S  D T K+L +           IETV +  K  R TLC+SSQV
Sbjct: 59  SEKAYIPFLNLLKQQVSKIDKTEKFLFKLED-----GNTIETVLLRHKDKRNTLCISSQV 113

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C+FC TG    VRNL   EI+ QV                    +   G  I+NI
Sbjct: 114 GCPVKCAFCATGQDGFVRNLDVNEIINQVYTVER--------------RLTKQGSNINNI 159

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAI 241
           V MGMGEPL N  NV K+L I S+  G++ SKR+IT+STSG VPNI + + E++ + LAI
Sbjct: 160 VFMGMGEPLLNLSNVLKALDILSNENGINISKRKITISTSGIVPNIEKILLEKLPIELAI 219

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+  N  R++++P+NR YPLE L    + Y   +   RI+FEY+M+   N S  DA  
Sbjct: 220 SLHSAINAKRDMIIPVNRSYPLEDLYAILQEYQRQTKR-RISFEYIMINDFNVSDIDANA 278

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILA 360
           L   +      +NLIP+NP  G E+    +K I  F   +K     +  +R  +G DI  
Sbjct: 279 LADFVHEFDHVVNLIPYNPVAGTEFERPSEKKIEKFFTFLKDVRKVNVTLRREKGTDIDG 338

Query: 361 ACGQLKSLSKR 371
           ACGQL+  + +
Sbjct: 339 ACGQLRQKAPK 349


>gi|219854612|ref|YP_002471734.1| hypothetical protein CKR_1269 [Clostridium kluyveri NBRC 12016]
 gi|219568336|dbj|BAH06320.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 362

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/370 (35%), Positives = 203/370 (54%), Gaps = 31/370 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M ++   +++    EELE  +          + R SQI  WIY +   DF  M++IS+ V
Sbjct: 1   MQYM--YNILNFNIEELENWMK----VNDESKFRASQIMDWIYKKNQYDFNYMTNISKNV 54

Query: 61  RHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
              L ++F I  PE+++++ S    T K+L +F  + I     IETV +  +   ++CVS
Sbjct: 55  IEKLKKNFYIGIPELIEKQKSKSQDTFKFLYKFQDKNI-----IETVVMKYRHGNSICVS 109

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +QVGC + C FC +    +VRNLT+ EIL Q+L ++                   +  +I
Sbjct: 110 TQVGCRMGCKFCASTVNGMVRNLTSGEILAQILKSQ-----------------TEINERI 152

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238
           SNIV+MG GEPL N+DNV K L++ +    L+  +R ITLST G VP I  +  E + + 
Sbjct: 153 SNIVLMGSGEPLDNYDNVLKFLNMVNSKYSLNIGQRHITLSTCGIVPKIMDLANENLQIT 212

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLH+  N  R  ++PI  KY +E +I AC++Y   +   R++FEY ++KG+NDS   
Sbjct: 213 LAISLHSPDNFSRRDMMPIANKYSIEEIIYACKYYINKTGR-RVSFEYALVKGVNDSLEF 271

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L+++LKG+   +NLIP N     ++  S + +I  F   +  +   + IR   G DI
Sbjct: 272 AERLVQLLKGLLCHVNLIPVNEVKENDFKKSSEDNIKKFYNKLIENKIETTIRREMGSDI 331

Query: 359 LAACGQLKSL 368
            AACGQL+  
Sbjct: 332 DAACGQLRRR 341


>gi|291297322|ref|YP_003508720.1| radical SAM enzyme, Cfr family [Meiothermus ruber DSM 1279]
 gi|290472281|gb|ADD29700.1| radical SAM enzyme, Cfr family [Meiothermus ruber DSM 1279]
          Length = 342

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 186/363 (51%), Gaps = 32/363 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            +  L+ +  EEL                R  Q+  W+Y +G R +  M+D+ + +R   
Sbjct: 6   DQIPLLALPIEEL-----------PGQGYRRGQLAAWLYAKGARQWDEMTDLPKALRAEW 54

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + + I     V    S DG+ K+L            + E VY+P  +R T+C+SS VGC
Sbjct: 55  AEQYRISEFTEVAPFPSQDGSVKYLFTLLD-----GQKTEAVYMPYLNRKTICISSMVGC 109

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
              C+FC TG     RNLTA E+L QVL A       P              R+I N+V+
Sbjct: 110 PAGCTFCATGRMGFGRNLTAAEMLDQVLFAAYHQQHAP--------------REIRNVVL 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N +NV K+L       GL+ S RRITLST G    I ++ E  + V LA+SL
Sbjct: 156 MGMGEPLLNLENVFKALERMLHPEGLAMSPRRITLSTVGIPRGIYKMAEWGLEVRLALSL 215

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  ++ R  ++P   +Y +  +++A RHY   +   RIT EY +LKG+ND    A  L 
Sbjct: 216 HAPDDETRQRIIPTAHRYSIAEIMEAVRHYYAKTKR-RITLEYTLLKGVNDHDWQARALA 274

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +  +G+   +NLIP+NPW G  +  + +  I+ F+  +++ G  + +R  RG D+ AACG
Sbjct: 275 QHFRGLSVHMNLIPWNPWEGAPHQGTPRAQILKFAAILEQQGIPTSVRWSRGRDVGAACG 334

Query: 364 QLK 366
           QL 
Sbjct: 335 QLA 337


>gi|78045218|ref|YP_360312.1| radical SAM protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|123770585|sp|Q3AC22|RLMN_CARHZ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|77997333|gb|ABB16232.1| radical SAM enzyme, Cfr family [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 342

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 122/361 (33%), Positives = 190/361 (52%), Gaps = 29/361 (8%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           + +  EE+   L +          R  QI +WI+  G  DF  M+++   +R  L ++F 
Sbjct: 5   LDLNSEEIVAWLKEN----NEKSFRLKQINEWIFKHGELDFNKMTNLPVRLREKLKENFL 60

Query: 70  IIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           +   +I+  K S DG + K+LL+           IE V +  +   T+C+S+QVGC + C
Sbjct: 61  LPSLKIIHSKKSRDGQSIKYLLKLKDNL-----GIEAVLLKYRYGNTVCLSTQVGCKMGC 115

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNLTA E++ Q+L+ +                  S   KI+ +V+MG G
Sbjct: 116 KFCATGLGGFSRNLTAGEMIEQILVLK-----------------ASSSEKITRVVLMGSG 158

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EPL NF  V K +   ++   L+ S R+IT+ST G VP I  + EE + V LAISLHA  
Sbjct: 159 EPLDNFTEVLKFMRKINEKDCLNISYRKITVSTCGMVPQIKALAEEKLPVTLAISLHAPD 218

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           + LRN L+PIN+++ L  L+DA  ++   +   R++FEY +++ +ND+   AL L ++L+
Sbjct: 219 DALRNELIPINKRWGLAELLDAAWYFIDKTGR-RVSFEYALIENVNDTVEHALKLAQLLQ 277

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
                +NLIP+N      +     + I  F E +KR+G    +R   G +I  ACGQLK+
Sbjct: 278 RKLVHVNLIPYNTIEKRNFKTPSVEKINKFKEVLKRAGIPVTVRRELGDEIDGACGQLKA 337

Query: 368 L 368
            
Sbjct: 338 K 338


>gi|113476505|ref|YP_722566.1| radical SAM protein [Trichodesmium erythraeum IMS101]
 gi|123056519|sp|Q110I1|RLMN_TRIEI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|110167553|gb|ABG52093.1| radical SAM enzyme, Cfr family [Trichodesmium erythraeum IMS101]
          Length = 345

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/362 (35%), Positives = 188/362 (51%), Gaps = 31/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+G+   +L E + + G P      R  Q+++WIY +G +    ++  S++ R  ++ 
Sbjct: 11  TPLLGLSLAKLTEWVQQQGQPA----YRGKQLYQWIYQKGAKSLADITVFSKQWREEIS- 65

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +F I    I    ++ D T K+LL+     I     IETV IP   R T+CVSSQVGC +
Sbjct: 66  NFPIGRSVIHHRSVAPDATVKYLLKLSDGNI-----IETVGIPTYKRLTVCVSSQVGCPM 120

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG     RNL A EI+ QVL  +                     R++S+IV MG
Sbjct: 121 ACDFCATGKGGFSRNLEAHEIIDQVLTVQE-----------------DFERRVSHIVFMG 163

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
           MGEPL N  NV  ++   +    L   +R IT+STSG    I ++   ++ V LA+SLHA
Sbjct: 164 MGEPLLNTKNVLAAVRSLNQD--LGIGQRLITISTSGIRDRIRQLAQHKLQVTLAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +  LR  L+P  + YPL  LI  CR Y  ++   RI+FEY++L   ND P  A  L K 
Sbjct: 222 SNQRLREHLIPSAKFYPLADLISECREYVKITKR-RISFEYILLASFNDLPDHARELAKN 280

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++G    +NLIP+NP    +Y    Q+ I TF+  +     +  IR  RGL+  AACGQL
Sbjct: 281 MRGFQCHVNLIPYNPISEVDYQRPTQEMIKTFANALAEQNIAVSIRYSRGLEANAACGQL 340

Query: 366 KS 367
           ++
Sbjct: 341 RA 342


>gi|333031476|ref|ZP_08459537.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
           coprosuis DSM 18011]
 gi|332742073|gb|EGJ72555.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
           coprosuis DSM 18011]
          Length = 344

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/374 (34%), Positives = 197/374 (52%), Gaps = 30/374 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN + K+ L+GM   EL+  + + G+P    +    QI  W+Y + + +   M+++S++ 
Sbjct: 1   MN-MDKKPLLGMTLSELQVLVSQAGLP----KFTAKQIASWLYKKKVTNIDEMTNLSKKN 55

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R LLNQ +++     +    S DGT K+L       +G    IE+VYIP++ R TLCVSS
Sbjct: 56  RDLLNQEYTVGAANPIQAVKSVDGTIKYLF-----SVGDKNSIESVYIPDEDRATLCVSS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC TG Q    NL+A +IL Q+                           ++
Sbjct: 111 QVGCKMNCLFCMTGKQGFSGNLSANQILNQIQTIPESD-------------------TLT 151

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIV MGMGEP+ N D V K L I +   G  +S +RIT+ST G      R  +E    LA
Sbjct: 152 NIVFMGMGEPMDNLDEVLKVLEILTSDYGYKWSPKRITVSTVGVRKGFERFLQESDCHLA 211

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +S+H      R  L+P  +  P+  +++  R Y   S  RR++FEY+M KG+NDS   A 
Sbjct: 212 VSIHTPIASQRKDLMPAEKGLPISEIVNILRDY-DFSKQRRLSFEYIMFKGVNDSISHAK 270

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+++L G+  ++NLI F+  P  +   SD + +  F + + ++G  + IR  RG DI A
Sbjct: 271 KLLELLDGLECRVNLIRFHAIPNVDLNGSDMETMTVFRDYLTKNGVFTTIRASRGEDIFA 330

Query: 361 ACGQLKSLSKRIPK 374
           ACG L ++ K   K
Sbjct: 331 ACGMLSTMEKNKNK 344


>gi|167470721|ref|ZP_02335425.1| radical SAM domain protein, Cfr family [Yersinia pestis FV-1]
          Length = 319

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 144/324 (44%), Positives = 190/324 (58%), Gaps = 19/324 (5%)

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           +R  L +   I  PE+  E+ S DGT KW ++          ++ETVYIPE  R TLCVS
Sbjct: 2   LRAKLQRVTEIRAPEVQKEQRSVDGTIKWAIKVGD------QQVETVYIPEADRATLCVS 55

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC+L C FC T  Q   RNL   EI+ QV  A  ++G           +  +  R I
Sbjct: 56  SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPI 105

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+VMMGMGEPL N +NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V L
Sbjct: 106 TNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVAL 165

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPR 297
           AISLHA ++D+R+ +VPINRKY +E  + A R Y   S  N  R+T EYVML  INDS  
Sbjct: 166 AISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTE 225

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L + LK  P KINLIP+NP+PG  Y  S    +  FS+ +   G+++ +R  RG D
Sbjct: 226 QAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDD 285

Query: 358 ILAACGQLKSLS-KRIPKVPRQEM 380
           I AACGQL      R  +  +++M
Sbjct: 286 IDAACGQLAGEVIDRTKRTLKKKM 309


>gi|294054447|ref|YP_003548105.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM
           45221]
 gi|293613780|gb|ADE53935.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM
           45221]
          Length = 384

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/375 (35%), Positives = 204/375 (54%), Gaps = 26/375 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SL G   E L EA+   G P      R  Q+ +W+Y + +  +  M+++ +  R  L+
Sbjct: 7   KPSLFGETLESLTEAVKAAGYPG----FRAKQVMEWLYKKRVGTWDAMTNLPKAFRGWLD 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--------EKSRGTLC 117
           + + +   + + +K S D T+K+LL    + +     IETV I         EKSR T+C
Sbjct: 63  ETYILYPTQPLLDKRSDDVTQKFLLELEDKSL-----IETVLIRAPQTGVGQEKSRKTVC 117

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VS QVGC+  C FC +G     RNL   E++ Q++    +       ED           
Sbjct: 118 VSIQVGCAYGCKFCASGLAGFRRNLGPAEVVSQLMHICRM-------EDAHTERAKDEIA 170

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
              NIV MGMGEPL N+D + +++ I +   GL+F  RRIT+STSG  P I ++ EE + 
Sbjct: 171 SFDNIVFMGMGEPLANYDTLVRTIKILNAEWGLNFGARRITVSTSGVAPKIKQLAEEGVA 230

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V LAISLH  +N++RN ++P+N++YPLE LI A + +        +T E++M++ INDS 
Sbjct: 231 VRLAISLHGATNEVRNKIMPVNKRYPLEELIPAAKAFKERHGRM-LTLEFIMIEDINDSI 289

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L KI K + A +N IP+N   G E++    +    F + ++++G S  IR  +G 
Sbjct: 290 DQARELAKIAKDLHAHVNCIPYNKVEGLEWVRPSVRKQDAFVDYLRKAGVSVTIRREKGH 349

Query: 357 DILAACGQLKSLSKR 371
           DI AACGQL+  +++
Sbjct: 350 DINAACGQLRLKTEK 364


>gi|160933496|ref|ZP_02080884.1| hypothetical protein CLOLEP_02342 [Clostridium leptum DSM 753]
 gi|156867373|gb|EDO60745.1| hypothetical protein CLOLEP_02342 [Clostridium leptum DSM 753]
          Length = 359

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 131/369 (35%), Positives = 203/369 (55%), Gaps = 30/369 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+ +  M  +EL   +   G P      +  QI++W++ RG+  F+ M+D+S+ VR  L
Sbjct: 7   QKKDIKSMTLDELRADMKIQGQPS----YKALQIYRWLH-RGVSSFEEMTDLSKIVRQFL 61

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            + + I    + ++ +S  D T K+L  F          +E V +  +   ++C+S+QVG
Sbjct: 62  TEKYYISVARVENKLVSDYDNTIKYLFSF-----ADGQCVEAVLMEYQHGRSICISTQVG 116

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC TG     RNLTA E+L QV  A+                    G +ISNIV
Sbjct: 117 CKMGCTFCATGLGGFQRNLTASEMLSQVQAAQK-----------------DAGVRISNIV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MGMGEPL N++ V + L + S   G++   R I+LST G V  I  + EE + + L++S
Sbjct: 160 LMGMGEPLDNYNQVIRFLRLVSSQEGMNLGMRHISLSTCGLVDRIYDLAEENLQLTLSVS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N +R+  +P+NRKYP+E L+ ACR+Y G +   RI+FEY M+ G+NDS   A  L
Sbjct: 220 LHAPNNAIRSRTMPVNRKYPIEELLKACRYYAGRTGR-RISFEYAMIDGVNDSDGCAKEL 278

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
              LKG+   +NLIP NP     Y  S ++    F   ++R+G ++ +R   G DI A+C
Sbjct: 279 AARLKGMLCHVNLIPVNPVREAGYQKSGRERQQAFIRILERAGITATVRRTLGADINASC 338

Query: 363 GQLKSLSKR 371
           GQL+    +
Sbjct: 339 GQLRRKHLK 347


>gi|297191769|ref|ZP_06909167.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721713|gb|EDY65621.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 368

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/369 (33%), Positives = 180/369 (48%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E ++A+  IG        R  Q+ +  + R   D    +DI    R  L  
Sbjct: 20  RHLADLTPAERKDAVASIG----EKPFRAKQLSQHYFARYAHDPAQWTDIPAAAREKLAT 75

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   ISCD   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  ELLPDLMSVV-RHISCDDDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   RI+ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RISIEYALIRDINDQAWRGDL 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  A
Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAAQER 368


>gi|219847237|ref|YP_002461670.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus
           aggregans DSM 9485]
 gi|219541496|gb|ACL23234.1| radical SAM enzyme, Cfr family [Chloroflexus aggregans DSM 9485]
          Length = 361

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 193/374 (51%), Gaps = 28/374 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +++  L      EL E L   G P      R  Q+++ +YV      + M+D+   +R  
Sbjct: 1   MEQRCLYDYNLAELTELLKAWGEPP----FRARQLYRHLYVNLTASVERMTDLPTTLRRR 56

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L +   +    +   +I   G TRK L R P   +     +ETV +    R T+CVS+Q 
Sbjct: 57  LAE-LPLSTLRLERVQIGDAGLTRKALFRLPDGAV-----VETVLMVYPDRSTVCVSTQA 110

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L+RNL++ EI+ Q + A           ++  M       +++N+
Sbjct: 111 GCGMGCVFCATGRLGLLRNLSSGEIVAQAIWASQ---------ELRAMNAAGPSGRVTNL 161

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V MGMGEP  N+D   +++    D  G +   R +T+ST G V  I R+  E + + LAI
Sbjct: 162 VFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIERLANERLPINLAI 221

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  + LR+ L+P+NR+YP+  L+ A R Y   +  RR++FEYV+L+G ND P  A+ 
Sbjct: 222 SLHAPDDTLRSELMPVNRRYPIAELMAATRQYIAKT-RRRVSFEYVLLQGKNDHPHQAIA 280

Query: 302 LIKILKG------IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           L ++L+       I   +NLIP+NP PG     S+ + +  F + +   G    +R  RG
Sbjct: 281 LARLLRREAPPGPILVHVNLIPWNPVPGTPLGRSEWERVNAFQQILTDYGIPCTVRVERG 340

Query: 356 LDILAACGQLKSLS 369
           ++I AACGQL   +
Sbjct: 341 VEIAAACGQLAGQT 354


>gi|255535320|ref|YP_003095691.1| radical SAM enzyme, Cfr family protein [Flavobacteriaceae bacterium
           3519-10]
 gi|255341516|gb|ACU07629.1| radical SAM enzyme, Cfr family protein [Flavobacteriaceae bacterium
           3519-10]
          Length = 358

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 198/370 (53%), Gaps = 26/370 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +N +K   +  +  EEL+   + +G        R  Q+++W++ + +     M+++S+++
Sbjct: 12  INTMK--DIRTLSLEELQNYFVTLG----EKPFRAKQVYEWLWSKNLHSIDEMTNLSKDL 65

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  + Q ++I    +   + S DGT K  ++     +     +E+V IP ++R T CVSS
Sbjct: 66  REKIAQEYTINPISVDQLQKSSDGTIKNGVKLHDGLL-----VESVLIPTETRTTACVSS 120

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL C FC T   K +RNL   EI+ QV L             I+        R +S
Sbjct: 121 QVGCSLNCEFCATARLKRMRNLEVAEIVDQVAL-------------IDRQSKMYFDRPLS 167

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           NIV MGMGEP+ N+ NV +++   +   GL  + RRIT+STSG    I  + +E + V L
Sbjct: 168 NIVFMGMGEPMMNYKNVVEAIRKITAPDGLGMAPRRITVSTSGIPKMIKMLADENLRVNL 227

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+     RN ++P + ++PL  ++D+ +H+   +    +TFEY + KGIND   D 
Sbjct: 228 ALSLHSAIEKTRNEIMPFSDRFPLTDIMDSLKHWYEKTGNI-VTFEYCVWKGINDEDEDI 286

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             LI+  K IP K+NLI +NP    +Y   ++     +   ++ +G +  IR  RG DI 
Sbjct: 287 KALIRYCKQIPCKVNLIQYNPIGDGKYDRCNKAAEENYVRQLENAGITVLIRRSRGGDID 346

Query: 360 AACGQLKSLS 369
           AACGQL + S
Sbjct: 347 AACGQLANKS 356


>gi|86134466|ref|ZP_01053048.1| radical SAM superfamily protein [Polaribacter sp. MED152]
 gi|85821329|gb|EAQ42476.1| radical SAM superfamily protein [Polaribacter sp. MED152]
          Length = 345

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 203/368 (55%), Gaps = 24/368 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            +KK+ +  + +E+L +  ++ G        R +Q+++W++ + +  F+ M++IS++ R 
Sbjct: 1   MIKKKDIRALTKEQLRDFFVENGDKA----FRGNQVYEWLWSKSLHTFEDMTNISKKTRE 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +L +HF I + ++   + S DGT K  ++     +     +E+V IP   R T CVSSQV
Sbjct: 57  MLEEHFVINHIKVDSMQKSADGTIKNGIKLHDGLV-----VESVLIPTPKRTTACVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GCSL C FC T   K +RNL  +EI  QV++             I+         K++NI
Sbjct: 112 GCSLDCKFCATARLKRMRNLNPDEIYDQVVV-------------IDKQSRLYHNHKLTNI 158

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V MGMGEPL N+ NV KS+ + +   GL  S +RIT+STSG    I ++  EE+   LA+
Sbjct: 159 VFMGMGEPLMNYKNVLKSIEMITSPEGLGMSSKRITVSTSGVPKMIKKMADEEVKFNLAV 218

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+  +++R  ++P N  +PL+ L ++  ++   +    IT+EYV+ +GIND   D   
Sbjct: 219 SLHSAIDEVRTSIMPFNTTFPLKDLKESLEYWYEKTKR-AITYEYVVWEGINDKKEDIAA 277

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L++  K +P K+NLI +NP    ++  +    +  +   ++    +  +R  RG DI AA
Sbjct: 278 LVQFCKYVPCKVNLIEYNPIDDGQFQQASNAALNNYISNLEMHDITVNVRRSRGKDIDAA 337

Query: 362 CGQLKSLS 369
           CGQL + +
Sbjct: 338 CGQLANKA 345


>gi|238926270|ref|ZP_04658030.1| Fe-S-cluster redox enzyme [Selenomonas flueggei ATCC 43531]
 gi|238885950|gb|EEQ49588.1| Fe-S-cluster redox enzyme [Selenomonas flueggei ATCC 43531]
          Length = 346

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/363 (35%), Positives = 190/363 (52%), Gaps = 26/363 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++ G  + EL +AL   GIP    R R  Q+ +W+Y RG   F  M ++ + +R  L   
Sbjct: 2   NIFGWTKTELADALRAEGIP----RFRADQVIRWMYQRGAVSFDIMDNLPKTLRVRLAAL 57

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           FSI  P+I     S DG T K L  F           ETV +      ++CVS+Q GC +
Sbjct: 58  FSIERPQIAARLTSTDGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCVSTQAGCRM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    LVRNLT  EI  QV+     L                 G  +  IV+MG
Sbjct: 113 GCAFCASTLHGLVRNLTVGEIAAQVIGMADYLRQ--------------EGAHVDTIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N+DNV  +L +      +  S R ITLSTSG VP I R+ EE + + L+ISLHA
Sbjct: 159 SGEPLENYDNVIGALRLLHADDTIGLSYRGITLSTSGIVPGILRLSEEGMPISLSISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + +LR+ L+P+NR YP+  ++ A + Y   +   R+T+EY++++ +ND  R+A  L ++
Sbjct: 219 PTEELRSSLMPVNRMYPMADVLRAAQTYAARTKR-RVTYEYILIRDVNDGIREAEQLAEL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G  A +NLIP NP      L   +  +  F   ++    ++ +R   G DI AACGQL
Sbjct: 278 LRGQLASVNLIPINPVVERNLLRPSKGTVRRFQRVLEERHITATVRREMGTDIQAACGQL 337

Query: 366 KSL 368
           +S 
Sbjct: 338 RSR 340


>gi|254392089|ref|ZP_05007278.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294815391|ref|ZP_06774034.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443743|ref|ZP_08218477.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705765|gb|EDY51577.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294327990|gb|EFG09633.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
           clavuligerus ATCC 27064]
          Length = 368

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 180/369 (48%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA+  IG        R  Q+ +  + R   D    +DI    R  L  
Sbjct: 20  RHLADLTPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPAAWTDIPAAARERLAS 75

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   +SCD   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  ELLPDLMSVV-RHVSCDNDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   R++ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RVSIEYALIRDINDHAWRGDL 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  A
Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAAAER 368


>gi|319760652|ref|YP_004124590.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039366|gb|ADV33916.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 359

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 138/366 (37%), Positives = 203/366 (55%), Gaps = 16/366 (4%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            LKK +L+ M  ++L     K+G        R+ QI  WIY +   DF  M+++ +++R 
Sbjct: 2   MLKKINLLDMSPKKLLVFFNKLG----ECAFRSDQIMDWIYKKYCSDFNKMTNLHKDLRV 57

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            LNQ   I  P I  E+ S DGTRKW++R           +ETVYIP+ +R TLC+SSQ 
Sbjct: 58  KLNQISEINAPIITHEQESSDGTRKWMMRIHDDKY-----VETVYIPDNNRATLCISSQS 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L CSFC T     ++NL   EI+ QV      +  +   +      +      I++I
Sbjct: 113 GCALGCSFCGTAKLGFIKNLRTSEIVGQVWRIARFISHYNKQQVKNCNNL----IPITHI 168

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N  NV  S+ I  +S G + SK  +TLSTSG VP I ++ + + V LA+S
Sbjct: 169 VFMGMGEPLLNLMNVVSSIQIILNSSGFNLSKHHVTLSTSGVVPGIDKLKDMVDVSLAVS 228

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDAL 300
           LHA ++ +RN ++PIN+KY ++ L+ + R Y   +  N +++T EYV+L  IND    A 
Sbjct: 229 LHAPNDVIRNKIMPINKKYNIDCLLQSIRCYLQKTKSNNKKVTIEYVLLNRINDEIEHAH 288

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            L K L  +P K+NL+ +N     +Y   +    +  F + +K  G  + IR  RG DI 
Sbjct: 289 ELAKKLITLPCKVNLMRWNSIKNIKYLKSTSDARLNNFYKVLKNYGIVTTIRKVRGADIH 348

Query: 360 AACGQL 365
           A+CGQL
Sbjct: 349 ASCGQL 354


>gi|223940814|ref|ZP_03632646.1| radical SAM enzyme, Cfr family [bacterium Ellin514]
 gi|223890519|gb|EEF57048.1| radical SAM enzyme, Cfr family [bacterium Ellin514]
          Length = 378

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 198/379 (52%), Gaps = 24/379 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             +     EEL+    ++  P      R  Q+ +W+YV  +  +  M+++ + +R +L +
Sbjct: 3   TDIKSYTSEELQARFKELNQPG----YRVGQLLEWLYVHRVASWDAMTNLPKGLREVLQK 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--------SRGTLCV 118
            F++   E+V  + S D T+K+L +     +     IE+V IP           R TLCV
Sbjct: 59  EFTLQTLELVRRQGSRDTTQKFLWKLNDGAM-----IESVLIPANPALYGEASDRHTLCV 113

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP----- 173
           S+QVGC+  C FC +G +   RNL  EEI+ Q+L                    P     
Sbjct: 114 STQVGCAYGCKFCASGLEGWKRNLRVEEIVEQILAIERWNAAEEAKGSKPPEANPKPKTT 173

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
            V R I+N+V+MGMGEPL N++N+ K+L I +   G     R+IT+STSG  P I ++ +
Sbjct: 174 EVTRFINNLVIMGMGEPLANYENLLKALRILNAPWGGGIGARKITISTSGLAPQIRKLAD 233

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           + +   LAISLH  ++++RN ++P+N+KYPL+ L  AC +Y    +   ITFEY+++ G+
Sbjct: 234 DPLQFRLAISLHGATDEVRNKIMPVNKKYPLKELTAACEYYQQKKDRM-ITFEYILIAGV 292

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND       L ++   + AK+NLIP+N      +    +     F   +++    + +R 
Sbjct: 293 NDGLDQVKPLAQLAHRLNAKVNLIPYNKVEDLTWERPTEAAQEAFLATLEKERVVATLRR 352

Query: 353 PRGLDILAACGQLKSLSKR 371
            +G DI AACGQL+  ++R
Sbjct: 353 EKGHDIDAACGQLRLKTER 371


>gi|229816215|ref|ZP_04446525.1| hypothetical protein COLINT_03265 [Collinsella intestinalis DSM
           13280]
 gi|229808223|gb|EEP44015.1| hypothetical protein COLINT_03265 [Collinsella intestinalis DSM
           13280]
          Length = 348

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 192/375 (51%), Gaps = 32/375 (8%)

Query: 4   LKKES----LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
           +++ +    +     ++L+E + ++G P      R  Q+++W++ + +  F  M+++   
Sbjct: 1   MERTNRSRDIRQFDLDDLKELMKELGQPA----FRAKQLYEWVHEKNVCSFDEMTNLPAG 56

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           +R  L + F+   P  + +++S DG+RK+LL F        V +ETV +P +++  +C+S
Sbjct: 57  LRQSLTETFAFKVPTELVKQVSKDGSRKYLLEFSD-----GVSVETVGMPNRNKLAVCIS 111

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ GC++ C+FC TG   L R+LTA+E++ QVL      G+                 ++
Sbjct: 112 SQAGCAMGCAFCATGLAGLSRSLTAQEMVDQVLHVSRDFGE-----------------RV 154

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
           +++V MG GEP  NFDN  ++L + +D  GL+   R +T+ST G +P I R  E      
Sbjct: 155 TSVVFMGQGEPFANFDNTVEALRMLNDPEGLAIGARHLTVSTCGVIPGIRRFAELPEQFT 214

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLH+     RN L+P  +K+ L  L +A + Y   +   R T+E+ M+ GIND+  +
Sbjct: 215 LAISLHSAIQTTRNQLMPGVKKFTLLRLHEAIQEYVEKTGR-RPTYEFAMIDGINDTSPE 273

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
              L+    G    +NLI  N  P   +  S    +      +   G  + IR  RG DI
Sbjct: 274 MQALVDFCAGTLCHVNLIQLNDIPDSPFRPSPIDKVEALQRRLTMHGVETTIRNSRGGDI 333

Query: 359 LAACGQLKSLSKRIP 373
            AACGQLK    R  
Sbjct: 334 DAACGQLKQRRFRAR 348


>gi|254382049|ref|ZP_04997411.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194340956|gb|EDX21922.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 371

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 127/369 (34%), Positives = 182/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  M   E  EA+  IG        R  Q+ +  + R   D    +DI    R  L Q
Sbjct: 23  RHLADMTPAERREAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAASREKLQQ 78

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   ++   ISCD   TRK L +     +     +E+V +    R T+C+SSQ GC
Sbjct: 79  ELLPDLMNVL-RHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGC 132

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV 
Sbjct: 133 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 184 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 243

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   RI+ EY +++ IND       
Sbjct: 244 SLHAPDDELRDTLVPVNTRWNVREVLDAAWEYAEKSGR-RISIEYALIRDINDQAWRGDL 302

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L K+LKG    +NLIP NP PG ++  S  +D   F E I R G    +R  RG +I  A
Sbjct: 303 LGKLLKGKRVHVNLIPLNPTPGSKWTASRPEDERAFVEAIARHGVPVTVRDTRGQEIDGA 362

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 363 CGQLAASER 371


>gi|302865911|ref|YP_003834548.1| radical SAM enzyme, Cfr family [Micromonospora aurantiaca ATCC
           27029]
 gi|315502468|ref|YP_004081355.1| radical sam enzyme, cfr family [Micromonospora sp. L5]
 gi|302568770|gb|ADL44972.1| radical SAM enzyme, Cfr family [Micromonospora aurantiaca ATCC
           27029]
 gi|315409087|gb|ADU07204.1| radical SAM enzyme, Cfr family [Micromonospora sp. L5]
          Length = 381

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 184/370 (49%), Gaps = 23/370 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            +    L  +     +  + ++G P      R  Q+    + R +RD + M+D+    R 
Sbjct: 19  SMPPRHLADLDLPGRQALVAELGEPA----FRAKQVSNHYFGRLVRDPERMTDLPAATRE 74

Query: 63  LLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            L           V E    DG TRK L R     +     +E+V +    R T+C+SSQ
Sbjct: 75  RLAGELLPTLLTPVRELACDDGATRKALWRLHDGSL-----VESVLMGYPDRVTVCISSQ 129

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   L RNL+  EI+ Q +    +             V+     ++S+
Sbjct: 130 AGCGMACPFCATGQAGLTRNLSTAEIVDQAVYLAGV---------AASGVVAGSPPRLSH 180

Query: 182 IVMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238
           +V MGMGEPL N+  V  ++         GL  S+R IT+ST G VP I R+  E++ V 
Sbjct: 181 VVFMGMGEPLANYSRVVAAIRRLVAPAPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVT 240

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ LVP+N+++ +  ++DA   Y   +  RR++ EY M+K +ND P  
Sbjct: 241 LALSLHAPDDELRDELVPVNQRWKVSEVLDAAWDYAA-TTGRRVSIEYAMIKDVNDQPWR 299

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L ++L G  A +NLIP NP PG  +  S +     F   ++ +G S+ +R  RG +I
Sbjct: 300 ADLLGRLLAGKLAHVNLIPLNPTPGSRWDASPKPVEREFVRRLRDAGVSTTVRDTRGREI 359

Query: 359 LAACGQLKSL 368
             ACGQL + 
Sbjct: 360 DGACGQLAAA 369


>gi|308071465|ref|YP_003873070.1| hypothetical protein PPE_04773 [Paenibacillus polymyxa E681]
 gi|305860744|gb|ADM72532.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 365

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 133/385 (34%), Positives = 212/385 (55%), Gaps = 26/385 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KKES+ G+  ++L   L++ G    H + R  Q+W  +Y + + DF  M++I ++   L
Sbjct: 1   MKKESIYGLTLDQLTAWLIEHG----HKKSRALQVWDALYRKRVTDFATMAEIHEDCTRL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +HFSI   E   ++ S DGT K+L R     +     IETV +  K   ++CV++QVG
Sbjct: 57  LAEHFSIETLEEHVKQQSADGTVKFLFRLQDGNL-----IETVLMRHKFGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+L++ EI+ Q++  +  L                 G ++S++V
Sbjct: 112 CNIGCSFCASGLLKKSRDLSSGEIVEQIMKVQLYLDQ------------ERPGDQVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  NF N+   + +  D  GL+   R IT+STSG    I    + ++ V LAIS
Sbjct: 160 VMGIGEPFDNFVNLSDFIRVIKDHKGLAIGPRHITVSTSGLADKIIEFADSDLHVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR  P+E L+ A  +Y   +N  RIT EY++LK +ND    AL L
Sbjct: 220 LHAPNNEIRTRIMKINRAIPIEKLMQAIDYYLDKTNR-RITLEYILLKDVNDGKEHALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            +++  +   A +NLIP+NP     +Y  S+ + I  F + +K+ G S  +R   G+DI 
Sbjct: 279 AELVGHRRNLANVNLIPYNPVDEHSQYQRSESESITGFYDVLKKQGISCSVRLEHGVDID 338

Query: 360 AACGQLKSLSKRIPKVPRQEMQITG 384
           AACGQL+S   R      +  +   
Sbjct: 339 AACGQLRSKQIRKDAGGSRNAEREA 363


>gi|332664665|ref|YP_004447453.1| ribosomal RNA large subunit methyltransferase N [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332333479|gb|AEE50580.1| Ribosomal RNA large subunit methyltransferase N [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 343

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 128/365 (35%), Positives = 189/365 (51%), Gaps = 26/365 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            +      ELEE   ++G      + R  Q+++W++ +G+R F  M+++S+ +R  L   
Sbjct: 2   DIRQRSLAELEELFKEMG----EAKFRAKQVYEWLWQKGVRSFDAMTNLSKSLREKLAAS 57

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGCS 125
           F I        + S DGT K   R           IE+V IP     R T+CVS QVGCS
Sbjct: 58  FVINGIVEDKVQRSADGTIKSRFRLHD-----GHMIESVLIPVPDDKRFTVCVSCQVGCS 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTC FC TG    VRNL A EI  QV++      +             + G  +SNIV M
Sbjct: 113 LTCKFCATGRMNRVRNLDAAEIYDQVVMVNQQCLE-------------TFGHPLSNIVYM 159

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL  ++NV +S+   +   GL  S RRIT+ST+G    I ++ ++     LA+SLH
Sbjct: 160 GMGEPLLAYNNVMESIERLTAPDGLHMSPRRITISTAGIAKMIKKLADDGCKTNLALSLH 219

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  +  R+ L+PIN +  L +L+DA   Y       RI++EY+  + +ND   DA NL K
Sbjct: 220 AADDLKRDELMPINEQNNLAVLMDAL-EYFYRKTHNRISYEYITFQNVNDGLDDAANLAK 278

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           + +  P ++N+I +NP     YL S++  I  F+  ++    +  +R  RG DI AACGQ
Sbjct: 279 LCRRFPVRVNIIEYNPIGDVPYLKSEEDRIDAFARYLREREITVTVRRSRGKDIDAACGQ 338

Query: 365 LKSLS 369
           L +  
Sbjct: 339 LANKE 343


>gi|146299542|ref|YP_001194133.1| radical SAM protein [Flavobacterium johnsoniae UW101]
 gi|205829760|sp|A5FJ06|RLMN_FLAJO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|146153960|gb|ABQ04814.1| radical SAM enzyme, Cfr family [Flavobacterium johnsoniae UW101]
          Length = 349

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 202/368 (54%), Gaps = 24/368 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            ++K+ +  + +++L +  +           R +Q+++W++ +G   F+ M+++++  R 
Sbjct: 2   QIEKKDIRALSKDQLRDFFVAN----NDKAFRGNQVYEWLWSKGAHSFEDMTNVAKTTRS 57

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +L ++F I + ++   + S DGT K  +R     +     +E+V IP ++R T CVSSQV
Sbjct: 58  MLEENFVINHIKVDTMQRSNDGTVKNAVRLHDGLV-----VESVLIPTETRTTACVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GCSL C+FC T   K +RNL   EI  Q++              I+          +SNI
Sbjct: 113 GCSLDCNFCATARLKRMRNLEPGEIYDQIMA-------------IDKESRLYHNHPLSNI 159

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V MGMGEPL N++NV K++ + +   GL  S +RITLSTSG    I ++ ++ +   LA+
Sbjct: 160 VFMGMGEPLMNYNNVIKAIDMVTSEEGLGMSPKRITLSTSGIPKMIKKMADDDVKFRLAV 219

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+  ++ R  ++P ++ +PL+ L +A   Y       ++++EYV+ KGIND       
Sbjct: 220 SLHSAIDETRAKIMPFSKNFPLKDLREAL-EYWYRKTKSKVSYEYVVWKGINDDKASVDA 278

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+K  K +P K+NLI +NP    E+  + ++ I+ + + ++  G    +R  RG DI AA
Sbjct: 279 LVKFCKYVPCKVNLIEYNPIDDGEFQQASEESILAYIKALENIGVVVKVRRSRGKDIDAA 338

Query: 362 CGQLKSLS 369
           CGQL +  
Sbjct: 339 CGQLANKE 346


>gi|291458606|ref|ZP_06597996.1| radical SAM enzyme, Cfr family [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291419139|gb|EFE92858.1| radical SAM enzyme, Cfr family [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 362

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 131/374 (35%), Positives = 202/374 (54%), Gaps = 43/374 (11%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           +  +   EL E + ++         R  QI+ W++ R    F  MS++S  +R  L +HF
Sbjct: 4   IRELSLPELREKMREL----SEKPFRAEQIYSWLHERLCASFDEMSNLSLPLREKLREHF 59

Query: 69  SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            +  PE V    S  DGTRK++ R     I     IE+V++  +   T+C+SSQVGC + 
Sbjct: 60  RLFLPEPVRILSSSLDGTRKFIFRLEDGHI-----IESVFMRYRHGNTVCISSQVGCRMG 114

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +  + L RNL+A E+L QV   + LLG+                 +ISN+V+MG 
Sbjct: 115 CRFCASTLEGLARNLSAAEMLTQVYQIQRLLGE-----------------RISNVVVMGS 157

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N++N+ K + + SD  GL  S+R +T+ST G VP + R+ EE   + LA+SLHA 
Sbjct: 158 GEPLDNYENLTKFVRMISDERGLHLSQRNLTVSTCGLVPELFRLSEEGFQLTLALSLHAP 217

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++++R  L+PI  +YPL  L+ A RHY   +   R++FEY +++ +ND+  +A  L  +L
Sbjct: 218 NDEIRRRLMPIAARYPLSELLPAVRHYFERTGR-RVSFEYSVVRDLNDTREEAEALSSLL 276

Query: 307 K--------------GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           K              G P  +NLIP NP     +   +++ I  F   ++++G S+ IR 
Sbjct: 277 KKLRDEGEGSAGQQKGFPLHVNLIPVNPIRERSWERPERRRIEDFQHILEKNGISATIRR 336

Query: 353 PRGLDILAACGQLK 366
             G DI  ACGQL+
Sbjct: 337 EMGADISGACGQLR 350


>gi|257792840|ref|YP_003183446.1| radical SAM enzyme, Cfr family [Eggerthella lenta DSM 2243]
 gi|257476737|gb|ACV57057.1| radical SAM enzyme, Cfr family [Eggerthella lenta DSM 2243]
          Length = 353

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 194/373 (52%), Gaps = 31/373 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  + K S+      EL   + ++G P      R  Q+ +W+Y R    +  M+++   +
Sbjct: 6   MAAMDK-SIKTYSLPELASVMKELGQPA----FRAQQLQEWLYQRHASSYDEMTNLPGSL 60

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCV 118
           R  L + F +  P +VD +IS DGTRK+L+ F        + +ETV IP +   R T+C 
Sbjct: 61  RATLAERFPLTMPTVVDRQISKDGTRKYLVEF-----DDGIRVETVGIPSRNGDRLTVCF 115

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           S+Q GC + C+FC TG +   RNL   EI+ QVL+ +                   +G++
Sbjct: 116 STQAGCPIACAFCATGQEGFARNLIPGEIVDQVLIVQE-----------------DMGKR 158

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGV 237
           ++N V MG GEP  N+DN   +L I +   GL    R I++ST G +P + R  GE    
Sbjct: 159 VTNAVGMGQGEPFLNYDNTMAALRILNHKKGLEIGARHISVSTCGILPGLERFSGEPEQF 218

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA    +R++++P   +Y L  L +A ++Y   +N  RIT EY+M++G+ND+P 
Sbjct: 219 TLAVSLHAARQPIRDLIMPNVARYKLPSLKEALQNYVAKTNR-RITLEYIMIEGVNDAPV 277

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
           D   L K    +   +NLIP N   G E+  S  + I  +   I + G  + +R  RG D
Sbjct: 278 DLKALQKFCSNLLCHVNLIPINAIEGSEFQPSSPETINLWLSEISKKGTEATLRDSRGSD 337

Query: 358 ILAACGQLKSLSK 370
           I  ACGQLK+  K
Sbjct: 338 ISGACGQLKNTFK 350


>gi|282861394|ref|ZP_06270459.1| radical SAM enzyme, Cfr family [Streptomyces sp. ACTE]
 gi|282564052|gb|EFB69589.1| radical SAM enzyme, Cfr family [Streptomyces sp. ACTE]
          Length = 368

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 182/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +  +E +EA+  IG        R  Q+ +  + R   D    ++I    R  L +
Sbjct: 20  RHLADLTPDERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTNIPAGSRDRLAE 75

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   ISCD   TRK L +     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  AMFPDLMSVV-RHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPYRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   RI+ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RISIEYALIRDINDQAWRGDL 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  A
Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAAAER 368


>gi|146297083|ref|YP_001180854.1| radical SAM protein [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|205829688|sp|A4XL78|RLMN_CALS8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145410659|gb|ABP67663.1| 23S rRNA m(2)A-2503 methyltransferase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 344

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 192/366 (52%), Gaps = 31/366 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +     +EL++ + + G        R +QI++W+Y +   D    ++I  ++R  + 
Sbjct: 2   KRLIKDFTFDELKKWVEETG----EKPFRANQIFEWLYKKNATDVNSFTNIPTQLRKRIE 57

Query: 66  QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + F +    +V  +   DG + K+LL            IE+V++P K    +C+S+QVGC
Sbjct: 58  EEFILNSLRVVKYE--SDGESIKFLLELVD-----GNAIESVFLPYKYGNAICISTQVGC 110

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    ++RNL+A E++ Q++   ++                   +KISN+V+
Sbjct: 111 RMKCAFCASTIGGMIRNLSAGEMVDQIVNIENITK-----------------KKISNVVL 153

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MG GEP  N +NV K + I +   G +   R IT+ST G V  I ++ E    V LAISL
Sbjct: 154 MGSGEPFDNIENVFKFIDIINSKEGKNIGARHITISTVGIVDGIYKLSEYPKQVNLAISL 213

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N+LRN LVP+NRKY +E ++ A  +Y   +N  R+TFEY ++ G+NDS   A  L 
Sbjct: 214 HAPNNNLRNKLVPMNRKYSIEDILKAVDYYISKTNR-RVTFEYALIDGVNDSIECANELA 272

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           KIL G    +NLIP NP  G  +    ++ +  F   +  SG    IR   G  I AACG
Sbjct: 273 KILSGKLVHVNLIPVNPVNGRNFKKPPKERVKEFYNVLILSGIQVTIRRELGSSIAAACG 332

Query: 364 QLKSLS 369
           QL+S  
Sbjct: 333 QLRSRH 338


>gi|206601630|gb|EDZ38113.1| Putative radical SAM family protein [Leptospirillum sp. Group II
           '5-way CG']
          Length = 379

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 140/335 (41%), Positives = 201/335 (60%), Gaps = 7/335 (2%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI +WI+ +   +++ M+++  E R   ++ + +  P + DEK S DGTRK+LL  
Sbjct: 28  YRARQIAQWIFRQNASEWERMNNLPGEDRRRWSEIWDLSLPIVRDEKRSRDGTRKFLLEL 87

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +     IE+V IP   R TLCVSSQVGC + C FC T    L+RNL+  EIL QV 
Sbjct: 88  SDGAL-----IESVLIPRDDRATLCVSSQVGCGIGCRFCRTAEMGLIRNLSVSEILGQVR 142

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           +A  LL + P  +  +      +  +++++V MGMGEPL NFD++ +SL++ +   G   
Sbjct: 143 VANRLLAESPVRDMSKETEPAPLLSRVNHLVFMGMGEPLANFDHLVRSLAVLTSPEGFGL 202

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S RRIT+STSG    I  +G   I V LA+SL A + +LR  L+PI+R +P+  ++ ACR
Sbjct: 203 SSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEELRENLMPISRHHPIRSILSACR 262

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            YP L N +RITFEYV+L G+ND    A  L ++L    +K+NLIPFNP+PG  Y   D+
Sbjct: 263 AYP-LRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRSKVNLIPFNPYPGSPYHRPDK 321

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             +  F E +   G ++ +RT RG DIL ACGQL 
Sbjct: 322 DRVRRFQEILLAKGVTATLRTTRGEDILGACGQLA 356


>gi|302537211|ref|ZP_07289553.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           C]
 gi|302446106|gb|EFL17922.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           C]
          Length = 371

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 181/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E  EA+  IG        R  Q+ +  + R   D    +DI    R  L Q
Sbjct: 23  RHLADLTPAERREAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAASREKLQQ 78

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   ISCD   TRK L +     +     +E+V +    R T+C+SSQ GC
Sbjct: 79  ELLPELMNVV-RHISCDNDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGC 132

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV 
Sbjct: 133 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 183

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 184 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 243

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   RI+ EY +++ IND       
Sbjct: 244 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RISIEYALIRDINDQAWRGDL 302

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F E I R G    +R  RG +I  A
Sbjct: 303 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIARHGVPVTVRDTRGQEIDGA 362

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 363 CGQLAASER 371


>gi|153953998|ref|YP_001394763.1| ribosomal RNA large subunit methyltransferase N [Clostridium
           kluyveri DSM 555]
 gi|146346879|gb|EDK33415.1| Hypothetical protein CKL_1373 [Clostridium kluyveri DSM 555]
          Length = 359

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 29/363 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++    EELE  +          + R SQI  WIY +   DF  M++IS+ V   L ++
Sbjct: 3   NILNFNIEELENWMK----VNDESKFRASQIMDWIYKKNQYDFNYMTNISKNVIEKLKKN 58

Query: 68  FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F I  PE+++++ S    T K+L +F  + I     IETV +  +   ++CVS+QVGC +
Sbjct: 59  FYIGIPELIEKQKSKSQDTFKFLYKFQDKNI-----IETVVMKYRHGNSICVSTQVGCRM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +    +VRNLT+ EIL Q+L ++                   +  +ISNIV+MG
Sbjct: 114 GCKFCASTVNGMVRNLTSGEILAQILKSQ-----------------TEINERISNIVLMG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
            GEPL N+DNV K L++ +    L+  +R ITLST G VP I  +  E + + LAISLH+
Sbjct: 157 SGEPLDNYDNVLKFLNMVNSKYSLNIGQRHITLSTCGIVPKIMDLANENLQITLAISLHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             N  R  ++PI  KY +E +I AC++Y   +   R++FEY ++KG+NDS   A  L+++
Sbjct: 217 PDNFSRRDMMPIANKYSIEEIIYACKYYINKTGR-RVSFEYALVKGVNDSLEFAERLVQL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+   +NLIP N     ++  S + +I  F   +  +   + IR   G DI AACGQL
Sbjct: 276 LKGLLCHVNLIPVNEVKENDFKKSSEDNIKKFYNKLIENKIETTIRREMGSDIDAACGQL 335

Query: 366 KSL 368
           +  
Sbjct: 336 RRR 338


>gi|328885356|emb|CCA58595.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
           venezuelae ATCC 10712]
          Length = 368

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 180/369 (48%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA+  IG        R  Q+    + R   D    +DI    R  L  
Sbjct: 20  RHLADLTPAERKEAVAAIG----EKPFRAKQLSTHYFARYAHDPAEWTDIPAASREKLAG 75

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   ISCD   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  ELLPDLMSVV-RHISCDDDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   RI+ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RISIEYALIRDINDQAWRGDL 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F E I R G    +R  RG +I  A
Sbjct: 300 LGRLLKGRRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIARHGVPVTVRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAAAER 368


>gi|332708170|ref|ZP_08428163.1| 23S rRNA m(2)A-2503 methyltransferase [Lyngbya majuscula 3L]
 gi|332353072|gb|EGJ32619.1| 23S rRNA m(2)A-2503 methyltransferase [Lyngbya majuscula 3L]
          Length = 351

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 128/362 (35%), Positives = 186/362 (51%), Gaps = 31/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+G    EL   + + G P      R  Q+  WIY +G+R    +S   ++ R+ +  
Sbjct: 16  PPLLGASLVELTSWIQEQGQPA----YRGRQLHGWIYEKGVRSLSEISVFPKQWRNTVAD 71

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              I    +     + DGT K+LL+     I     IETV IP   R T+CVSSQVGC +
Sbjct: 72  -VPIGRSRLHYRLEAKDGTVKYLLQLSDGQI-----IETVGIPTPKRLTVCVSSQVGCPM 125

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG     RNL   EI+ QVL  R    +                 ++SN+V MG
Sbjct: 126 ACDFCATGKGGFTRNLARHEIVDQVLTVREDFQE-----------------RVSNVVFMG 168

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
           MGEPL N + V  ++   +    L    R +T+ST G    I ++   ++ V LA+SLHA
Sbjct: 169 MGEPLLNTEAVVGAVKSLNQD--LGIGARSLTISTVGIPGRIRQLAQHQLQVTLAVSLHA 226

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +  LR  L+P  + YPL+ L+D CR Y  L++  R+TFEY++L G+ND    A+ L K 
Sbjct: 227 SNQQLREQLIPSAKHYPLKALLDECRDYVNLTSR-RVTFEYILLGGLNDCREHAVELAKN 285

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G  + +NLIP+NP    +Y   + + I  F E +K+   +  +R  RGLD  AACGQL
Sbjct: 286 LRGFQSHVNLIPYNPISEVDYQRPNYRRIQGFVEALKQQHIAVSVRHSRGLDKDAACGQL 345

Query: 366 KS 367
           ++
Sbjct: 346 RA 347


>gi|227824650|ref|ZP_03989482.1| ribosomal RNA large subunit methyltransferase N [Acidaminococcus
           sp. D21]
 gi|226905149|gb|EEH91067.1| ribosomal RNA large subunit methyltransferase N [Acidaminococcus
           sp. D21]
          Length = 352

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 127/376 (33%), Positives = 200/376 (53%), Gaps = 28/376 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+ ++G+  E++++  L +G+     + R  Q+++WIY +G   F+ M+++S+E R L
Sbjct: 1   MTKKEILGLTLEQMQDEFLALGL----KKFRAEQVFRWIYEKGATTFEEMTNLSKENRSL 56

Query: 64  LNQHFSI--IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           L   +SI     +++    S D  T K LL            +ETV +      + C+SS
Sbjct: 57  LEGTYSILSGAVKVLRTYDSADRLTHKVLLGLSD-----GASVETVLMHHDYGYSACLSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C+FC +G    +RNLTA EIL Q+                   V+   G ++S
Sbjct: 112 QVGCAMNCTFCASGLHGFMRNLTAGEILAQLYYF--------------DHVLLPKGERVS 157

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VML 239
            IV+MG GEP+ N DNV  +L +     G   S R +T+ST G VP I  +  +   + L
Sbjct: 158 RIVIMGSGEPMLNLDNVLAALDLMHHDKGQCISYRNMTISTCGIVPGIEEMTRQGRTINL 217

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +  LR+ L+PIN KYP   +IDA   Y  + N R++ +EY++L GIND   DA
Sbjct: 218 AVSLHAATGALRDRLMPINGKYPFPEVIDAASRYEKM-NGRQVMYEYILLAGINDREEDA 276

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L + L G    +NLIP NP P   +   + +D+  F + +K+   +  +R   G DI 
Sbjct: 277 RALAEALSGKECVVNLIPANPVPEKGFRRPEDRDVDRFFQYLKKRHINVTVRKEMGKDIN 336

Query: 360 AACGQLKSLSKRIPKV 375
           AACGQL++   +  + 
Sbjct: 337 AACGQLRASQLKEEQA 352


>gi|166363996|ref|YP_001656269.1| hypothetical protein MAE_12550 [Microcystis aeruginosa NIES-843]
 gi|205829811|sp|B0JT33|RLMN_MICAN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|166086369|dbj|BAG01077.1| hypothetical protein MAE_12550 [Microcystis aeruginosa NIES-843]
          Length = 337

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 123/360 (34%), Positives = 183/360 (50%), Gaps = 31/360 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+    EEL + +   G P      R  Q+ +W+Y +G+     +S   QE R  +   +
Sbjct: 3   LLAKSLEELTDWVKDQGQPA----YRGKQLHQWLYEKGVHSLADISVFPQEWRSKMAD-Y 57

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I    I    ++ D TRK+LL+     I     IE V IP + R T+CVSSQVGC + C
Sbjct: 58  PIGRSLIHYRSVAPDRTRKYLLKLADGLI-----IEAVGIPSEKRLTVCVSSQVGCPMAC 112

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNL A EI+ QVL  +                     +++S++V MGMG
Sbjct: 113 DFCATGKGGFTRNLKAHEIVDQVLTVQE-----------------DFQQRVSHVVFMGMG 155

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EPL N   V  ++   +  +G    +R +T+ST G    I ++ E  + +  A+SLHA +
Sbjct: 156 EPLLNIPEVVTAIHCLNKDVG--IGQRCLTISTVGLPHKIKQLAEHNLQITFAVSLHASN 213

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             +R  L+P    Y L  LI  C+ Y  ++   R+TFEY++L G+ND P  A  L K++K
Sbjct: 214 QQVRAKLIPSADHYLLSNLIQDCQEYVQITGR-RVTFEYILLAGVNDLPEHARELAKLVK 272

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP    +Y   D+K I  F   +++   +  +R  RGL   AACGQL+S
Sbjct: 273 GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAVTVRYSRGLATDAACGQLRS 332


>gi|315607782|ref|ZP_07882775.1| cfr family radical SAM enzyme [Prevotella buccae ATCC 33574]
 gi|315250251|gb|EFU30247.1| cfr family radical SAM enzyme [Prevotella buccae ATCC 33574]
          Length = 358

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 206/383 (53%), Gaps = 32/383 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN   K SL+G+   EL++   ++G+P         Q+ KW+Y + ++    M++IS+  
Sbjct: 1   MNT--KTSLLGLSLAELKDVAKRLGMPA----FTGGQMAKWLYGQHVKSIDEMTNISKAN 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-----IETVYIPEKSRGT 115
           R  L  H++I     +DE+ S DGT K+L       +G   E     +ETVYIP+K R T
Sbjct: 55  REKLAGHYTIGCAAPIDEQRSKDGTVKYLFPVTTTAVGENREAPVKFVETVYIPDKDRAT 114

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           LCVS QVGC + C FC TG Q    NL+  +IL QV     +                  
Sbjct: 115 LCVSCQVGCKMNCLFCQTGKQGFEGNLSVADILNQVYSLPEVD----------------- 157

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
             K++NIV MG GEP+ N DNV ++  I +   G ++S +RIT+S+ G    + R  EE 
Sbjct: 158 --KLTNIVFMGQGEPMDNLDNVLRATEILTADYGWAWSPKRITVSSVGVKNKLRRFLEES 215

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              +AIS+H+   + R  L+P  R   +E +++  ++Y   S+ RR++FEY++  G+NDS
Sbjct: 216 DCHVAISMHSPLPEQRAELMPAQRGMGIEEVVELLKNY-DFSHQRRLSFEYIVFGGVNDS 274

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
              A  ++++LKG+  +INLI F+  PG     +++K +    + +   G  + IR  RG
Sbjct: 275 NAHAREIVRLLKGLDCRINLIRFHQIPGVALHGAEEKRMEELRDYLTAHGVFTTIRASRG 334

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACG L S SK+I ++  +
Sbjct: 335 EDIFAACGLL-STSKKIEELRSK 356


>gi|268611643|ref|ZP_06145370.1| radical SAM protein [Ruminococcus flavefaciens FD-1]
          Length = 352

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 200/370 (54%), Gaps = 30/370 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  ++ +   ELE  L ++G      + R  QI++W++V+ + DF  M+DIS ++R +
Sbjct: 1   MEKIDILSLSLTELENVLTELG----EKKFRAKQIFQWLHVKRVTDFDKMTDISVQLRTV 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L + F I    +  +  SC D T K+L R           +ETV +      ++CVS+QV
Sbjct: 57  LKEKFCINGLFVEKKLESCMDNTVKYLYRLSDGNF-----VETVLMEYNYGHSICVSTQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +     VR+L   EIL+Q+                        G ++S +
Sbjct: 112 GCKMGCRFCASAIAGYVRDLEPSEILMQIYETER-----------------DSGVRVSGV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V+MG+GEPL N+DNV + LS+ SD  G + S R ++LST G VP I  + +  +GV L +
Sbjct: 155 VLMGIGEPLDNYDNVVRFLSLLSDKNGNNMSLRHVSLSTCGIVPRIYDLAKLRLGVTLCV 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH   N+ R+ ++P+N KY ++ LI AC+ Y   +   RITFEY ++ G+N +  DA  
Sbjct: 215 SLHCPDNEGRSKIMPVNNKYDIDSLITACKDYIDATGR-RITFEYAVIDGVNSTDADADK 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +L+GI   +NLIP N      Y  + +  +  F++ + + G ++ +R   G DI AA
Sbjct: 274 LADLLRGINCHVNLIPVNKVKERNY-RTARSGVADFAKRLGKRGINATVRRTLGSDIEAA 332

Query: 362 CGQLKSLSKR 371
           CGQL+  + +
Sbjct: 333 CGQLRRDAAK 342


>gi|253584157|ref|ZP_04861355.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
           varium ATCC 27725]
 gi|251834729|gb|EES63292.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
           varium ATCC 27725]
          Length = 350

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 134/371 (36%), Positives = 204/371 (54%), Gaps = 28/371 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + ++ELEE ++ +G+     +    QI+ W++ + +RD   ++++S + R LL
Sbjct: 3   EKINLLNLNQQELEELVISLGM----KKFYGKQIFNWLHQKIVRDINEITNLSLKDRELL 58

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQV 122
            +   I +  ++ ++IS  D T K+L +           IETV +  K  R TLC+SSQV
Sbjct: 59  AEKTYIPFLNLLKQQISKIDKTEKFLFKLED-----GNTIETVLLRHKDKRNTLCISSQV 113

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C+FC TG    VRNL   EI+ QV                    +   G  I+NI
Sbjct: 114 GCPVKCAFCATGQDGFVRNLDVNEIINQVYTVER--------------RLVKQGSNINNI 159

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAI 241
           V MGMGEPL N  NV K+L I S+  G++ SKR+IT+STSG VPNI + + E++ + LAI
Sbjct: 160 VFMGMGEPLLNLSNVLKALDILSNENGINISKRKITISTSGIVPNIEKILLEKLPIELAI 219

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+  N  R++++P+NR YPLE L    + Y   +   RI+FEY+M+   N S  DA  
Sbjct: 220 SLHSAINAKRDMIIPVNRSYPLEDLYAILQEYQRQTKR-RISFEYIMINEFNVSDVDANA 278

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILA 360
           L   +      +NLIP+NP  G E+    +K I  F   +K     +  +R  +G DI  
Sbjct: 279 LADFVHEFDHVVNLIPYNPVAGTEFERPSEKKIEKFFTFLKDVRKVNVTLRREKGTDIDG 338

Query: 361 ACGQLKSLSKR 371
           ACGQL+  + +
Sbjct: 339 ACGQLRQKAPK 349


>gi|288924769|ref|ZP_06418706.1| radical SAM enzyme, Cfr family [Prevotella buccae D17]
 gi|288338556|gb|EFC76905.1| radical SAM enzyme, Cfr family [Prevotella buccae D17]
          Length = 358

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 131/383 (34%), Positives = 205/383 (53%), Gaps = 32/383 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN   K SL+G+   EL++   ++G+P         Q+ KW+Y + ++    M++IS+  
Sbjct: 1   MNT--KTSLLGLSLAELKDVAKRLGMPA----FTGGQMAKWLYGQHVKSIDEMTNISKAN 54

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-----IETVYIPEKSRGT 115
           R  L  H++I     +DE+ S DGT K+L       +G   E     +ETVYIP+K R T
Sbjct: 55  REKLAGHYTIGCASPIDEQRSKDGTVKYLFPVTTTAVGENREAPVMFVETVYIPDKDRAT 114

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           LCVS QVGC + C FC TG Q    NL+  +IL QV     +                  
Sbjct: 115 LCVSCQVGCKMNCLFCQTGKQGFEGNLSVADILNQVYSLPEVDN---------------- 158

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
              ++NIV MG GEP+ N DNV ++  I +   G ++S +RIT+S+ G    + R  EE 
Sbjct: 159 ---LTNIVFMGQGEPMDNLDNVLRATEILTADYGWAWSPKRITVSSVGVKNKLRRFLEES 215

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              +AIS+H+   + R  L+P  R   +E +++  ++Y   S+ RR++FEY++  G+NDS
Sbjct: 216 DCHVAISMHSPLPEQRAELMPAQRGMGIEEVVELLKNY-DFSHQRRLSFEYIVFGGVNDS 274

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
              A  ++++LKG+  +INLI F+  PG     +++K +    + +   G  + IR  RG
Sbjct: 275 NAHAREIVRLLKGLDCRINLIRFHQIPGVALHGAEEKRMEELRDYLTAHGVFTTIRASRG 334

Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378
            DI AACG L S SK+I ++  +
Sbjct: 335 EDIFAACGLL-STSKKIEELRSK 356


>gi|225847963|ref|YP_002728126.1| ribosomal RNA large subunit methyltransferase N
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644008|gb|ACN99058.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 353

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 138/369 (37%), Positives = 207/369 (56%), Gaps = 29/369 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L  +  +ELE  +++ G P    + R  QI KW+Y + +  F  M+D+S+E+R  L +
Sbjct: 2   INLKNLNFKELENFVVENGWP----KFRAKQIAKWLYNKKVESFDQMTDLSKEIRQTLKE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              I   +++  + S  DG+ K+L +           IETV I EK+  TLCVS+QVGC+
Sbjct: 58  KCEINSLKLLTYQQSKIDGSIKFLWQLKD-----GNTIETVLINEKNHKTLCVSTQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FCYT    L+RNL   EI+ Q +  +  LGD                 +ISNIV M
Sbjct: 113 VGCKFCYTTKDGLIRNLETAEIVDQYINVQRFLGD-------------EEENRISNIVYM 159

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLAIS 242
           GMGEPL N+DNVKKS+ I +       S R+IT+S+SG +  I R+ E+     V LA+S
Sbjct: 160 GMGEPLANYDNVKKSVQIFTHPDMCKLSHRKITISSSGILHQIKRMFEDKDFPQVKLAVS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+A     R+ L+PI++   LE L+D  R  P L    RIT EYV++K +ND+  DA  L
Sbjct: 220 LNASHQSQRSYLMPISQTNTLEDLMDLLRKLP-LKPGWRITLEYVLIKNVNDTVEDAKRL 278

Query: 303 IKILKGIPA--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           + ++K      K+NLIPFNP+PG ++   ++  ++ F + +  +  ++ IR  +G DI A
Sbjct: 279 VNLIKKDKHRFKVNLIPFNPYPGSDFERPEESRVLAFEKVLWDNNIATFIRWSKGRDIDA 338

Query: 361 ACGQLKSLS 369
           ACGQL+   
Sbjct: 339 ACGQLRKKE 347


>gi|163784065|ref|ZP_02179018.1| hypothetical protein HG1285_12252 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880664|gb|EDP74215.1| hypothetical protein HG1285_12252 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 355

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/372 (34%), Positives = 206/372 (55%), Gaps = 31/372 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K +L  +  +ELE  +      +   + R  QI KW+Y + +  +  M+D+S+++R+ 
Sbjct: 1   MEKVNLKDLNFKELENWVKD----KNWHKFRAKQISKWLYNKKVSSYDEMTDLSKDIRNY 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L ++      ++V  + S  DG+ K+L R           IE+V+IPE+   T+CVS+QV
Sbjct: 57  LKENTEFESLKLVSYEKSQIDGSIKFLWRLKD-----GNTIESVFIPERDHNTICVSTQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C+FCYT    L+RNLT  EI+ Q L  +  +G+                 +ISN+
Sbjct: 112 GCAVGCTFCYTTKDGLIRNLTTAEIIDQYLQVQRFVGN---------------ENRISNV 156

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV---GEEIGVML 239
           V MGMGEPL N+DNV+K++ I +D   L  S R+IT+S+SG +  I ++    E   V L
Sbjct: 157 VFMGMGEPLANYDNVRKAVQIMTDKNMLDLSNRKITISSSGIIAQILKMYNDPEFPQVRL 216

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SL+A    +R  ++PI++   +E L+      P  +   RI  EYV++K +ND+  DA
Sbjct: 217 AVSLNASDQKVRESIMPISKTNTIEDLMKTLNSLPFKT-GYRIMLEYVLIKDVNDTEEDA 275

Query: 300 LNLIKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
             L+K++       K+NLIPFNP+   +Y   D+K +  F + +     S+ IR  +G D
Sbjct: 276 KKLVKLIGKNKKRYKVNLIPFNPFEESDYKRPDEKRVEKFQKILWEHNISAFIRWSKGRD 335

Query: 358 ILAACGQLKSLS 369
           I AACGQL+   
Sbjct: 336 ISAACGQLRKKE 347


>gi|320008274|gb|ADW03124.1| radical SAM enzyme, Cfr family [Streptomyces flavogriseus ATCC
           33331]
          Length = 368

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 180/368 (48%), Gaps = 23/368 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +  +E +EA+   G        R  Q+ +  + R   D    ++I    R  L +
Sbjct: 20  RHLADLTPDERKEAVAATG----EKPFRAKQLSQHYFTRYAHDPAEWTNIPAASRDKLAE 75

Query: 67  -HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F  +   +       D TRK L +     +     +E+V +    R T+C+SSQ GC 
Sbjct: 76  AMFPELMSVLRHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGCG 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVFM 181

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N+  V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+S
Sbjct: 182 GMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVP+N ++ +  ++DA   Y   S   RI+ EY +++ IND       L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RISIEYALIRDINDQAWRGDRL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LKG    +NLIP NP PG ++  S  +D   F E I R G    +R  RG +I  AC
Sbjct: 301 GRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIARHGVPVTVRDTRGQEIDGAC 360

Query: 363 GQLKSLSK 370
           GQL +  +
Sbjct: 361 GQLAASER 368


>gi|91215990|ref|ZP_01252959.1| radical SAM enzyme, Cfr family protein [Psychroflexus torquis ATCC
           700755]
 gi|91185967|gb|EAS72341.1| radical SAM enzyme, Cfr family protein [Psychroflexus torquis ATCC
           700755]
          Length = 348

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/364 (34%), Positives = 197/364 (54%), Gaps = 24/364 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +  + ++EL E  +  G        R SQ++ W++ +   +F+ M+++S+E R +L 
Sbjct: 5   KKDIRALSKQELNEFFVSQG----DKSFRGSQVYNWLWNKATYNFEDMTNLSKETRQMLE 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F I + E+ + + S DGT K  ++           +E+V IP  SR T CVSSQVGCS
Sbjct: 61  DNFVINHIEVDEMQRSKDGTIKNAVKLHD-----GFTVESVLIPTLSRTTACVSSQVGCS 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T   K +RNL A+EI  QV+              I+       G  +SNIV M
Sbjct: 116 LDCKFCATAKLKRMRNLNADEIFDQVVA-------------IDKESRLYNGIPLSNIVFM 162

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N+ NV KS+   +   GL  S +RITLSTSG    I ++ ++ +   LA+SLH
Sbjct: 163 GMGEPLMNYKNVLKSVEKITSPDGLGMSPKRITLSTSGVPKMIKKLADDDVKFHLAVSLH 222

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  +++R  ++P N K+PL  L D+  ++   +    +T+EY++ KGIND+  D   L+K
Sbjct: 223 SAIDEIRTQIMPFNAKFPLADLKDSLLYWYEKTGKS-VTYEYIVWKGINDTQEDISALVK 281

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             + IP K+N+I +NP    ++       +      ++ +  +  +R  RG DI AACGQ
Sbjct: 282 FCQLIPCKVNIIEYNPIDDGQFQQGSDDAVAKHVNALEANHITVTLRHSRGKDIDAACGQ 341

Query: 365 LKSL 368
           L + 
Sbjct: 342 LANK 345


>gi|325268958|ref|ZP_08135579.1| cfr family radical SAM enzyme [Prevotella multiformis DSM 16608]
 gi|324988579|gb|EGC20541.1| cfr family radical SAM enzyme [Prevotella multiformis DSM 16608]
          Length = 350

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 195/370 (52%), Gaps = 29/370 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L+GM   EL+E    +G+P         QI KW+Y + +R    M++IS+  R  L 
Sbjct: 5   KKNLLGMTLGELKEVAKSLGMPA----FTGGQIAKWLYTQHVRSIDEMTNISKANREKLA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             +++   +  D + S DGT K+L    +        +ETVYIPE  R TLCVSSQVGC 
Sbjct: 61  AAYAVGCKDPTDAQYSKDGTVKYLFPTESGKF-----VETVYIPEDDRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LTA +IL QV                          K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLTATDILNQVYSLPERD-------------------KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DNV ++  I +   G  +S +RIT+S+ G    + R  EE    +AIS+H+
Sbjct: 157 GQGEPMDNLDNVLRATEILTAGFGYGWSPKRITVSSVGVKGKLKRFLEESDCHVAISMHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R+ L+P  R   +E ++    +Y   S+ RR++FEY++ KG+NDS   A  ++++
Sbjct: 217 PLHEQRSELMPAERGMSIESIVGLLANY-DFSHQRRLSFEYIVFKGVNDSEAHAKAIVRL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+  +INLI F+P P       D + +  F   + + G  + IR  RG DI AACG L
Sbjct: 276 LKGLDCRINLIRFHPIPNTPLQGVDDRKMEEFRNYLTQHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSKRIPKV 375
            +  ++  + 
Sbjct: 336 STAKEKEERK 345


>gi|313205950|ref|YP_004045127.1| 23S rRNA m(2)a-2503 methyltransferase [Riemerella anatipestifer DSM
           15868]
 gi|312445266|gb|ADQ81621.1| 23S rRNA m(2)A-2503 methyltransferase [Riemerella anatipestifer DSM
           15868]
 gi|315022263|gb|EFT35291.1| radical SAM enzyme, Cfr family protein [Riemerella anatipestifer
           RA-YM]
 gi|325336610|gb|ADZ12884.1| Predicted Fe-S-cluster redox enzyme [Riemerella anatipestifer
           RA-GD]
          Length = 345

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/366 (34%), Positives = 197/366 (53%), Gaps = 24/366 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + +  +  +EL++  + IG        R  Q++ W++ +     + M+++S+ +R  + Q
Sbjct: 2   KDIRTLSLDELKDYFISIG----EKPFRAKQVYDWLWSKNGHSIEEMTNLSKNLRERIAQ 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F I   ++   + S DGT K  ++     +     +E+V IP  +R T CVSSQVGCSL
Sbjct: 58  DFVIKPVKVDLLQKSKDGTIKNGVKLHDGLM-----VESVLIPTDTRTTACVSSQVGCSL 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC T   K +RNL   EI+ QV L             I+        R +SNIV MG
Sbjct: 113 NCEFCATARLKRMRNLEVAEIVDQVAL-------------IDQQSKAYFDRPLSNIVFMG 159

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEP+ N+ NV +++   ++  GL  S RRIT+STSG    I  + +E + V LA+SLH+
Sbjct: 160 MGEPMMNYKNVVEAIRKITEPEGLGMSPRRITVSTSGIPKMIKMLADENLKVKLALSLHS 219

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                RN ++P + K+PL  ++++ +++   + +  IT EY + KGIND+  D   LIK 
Sbjct: 220 AIESKRNEIMPFSTKFPLTDIMESLQYWYEKTGSI-ITLEYCIWKGINDTDEDIKALIKF 278

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            K +P K+NLI +N     +Y  S+ K    + E ++R G +  IR  RG DI AACGQL
Sbjct: 279 CKKVPTKVNLIEYNSIGDGKYDRSNPKATQNYVEQLERHGITVMIRRSRGGDIDAACGQL 338

Query: 366 KSLSKR 371
            + S +
Sbjct: 339 ANKSTQ 344


>gi|297156855|gb|ADI06567.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           bingchenggensis BCW-1]
          Length = 368

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 180/369 (48%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E  EA+  +G        R  Q+ +  + R   D    +DI    R  L  
Sbjct: 20  RHLADLSPAERREAVAALG----EKPFRAGQVSRHYFARYSHDPAQWTDIPAAAREKLAA 75

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   ISCD   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  GLLPDLMSVV-RHISCDDDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    IP    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEIPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  + LR+ LVP+N ++ +  ++DA   Y   S   R++ EY +++ IND    A  
Sbjct: 241 SLHAPDDGLRDTLVPVNTRWKVREVLDAAWEYAETSGR-RVSIEYALIRDINDQAWRADL 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F   ++  G    +R  RG +I  A
Sbjct: 300 LGRLLKGRRVHVNLIPLNPTPGSKWTASRPEDEKAFVAALEAHGVPVTVRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAATER 368


>gi|239944638|ref|ZP_04696575.1| hypothetical protein SrosN15_26832 [Streptomyces roseosporus NRRL
           15998]
 gi|239991102|ref|ZP_04711766.1| hypothetical protein SrosN1_27614 [Streptomyces roseosporus NRRL
           11379]
 gi|291448102|ref|ZP_06587492.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351049|gb|EFE77953.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 368

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 178/368 (48%), Gaps = 23/368 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA+   G        R  Q+ +  + R   D    ++I    R  L +
Sbjct: 20  RHLADLTPAERKEAVAATG----EKPFRAQQLSQHYFARYAHDPAEWTNIPAASREKLAE 75

Query: 67  H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F  +   I       D TRK L +     +     +E+V +    R T+C+SSQ GC 
Sbjct: 76  ALFPELMSVIRHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPERVTMCISSQAGCG 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVFM 181

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N+  V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+S
Sbjct: 182 GMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVP+N ++ +  ++DA   Y   S   RI+ EY +++ IND       L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RISIEYALIRDINDQAWRGDLL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LKG    +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  AC
Sbjct: 301 GRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGAC 360

Query: 363 GQLKSLSK 370
           GQL +  +
Sbjct: 361 GQLAASER 368


>gi|255038476|ref|YP_003089097.1| radical SAM enzyme, Cfr family [Dyadobacter fermentans DSM 18053]
 gi|254951232|gb|ACT95932.1| radical SAM enzyme, Cfr family [Dyadobacter fermentans DSM 18053]
          Length = 350

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 194/371 (52%), Gaps = 25/371 (6%)

Query: 1   MNFLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
           M  ++ K+ +  +  ++++  + + G        R  QI++WI+ +    F  M+++S  
Sbjct: 1   MTTIQQKQDIRKLNVDQIKTWMTEHG----EKAFRAKQIYEWIWKKSAHSFDEMTNLSLA 56

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
            R L+N+HF I   ++  ++ S DGT K   +     +     +E V IP   R T CVS
Sbjct: 57  TRELMNEHFVIHSLDVAKKQHSNDGTVKSAFKLFDGNL-----VEGVLIPAADRMTACVS 111

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGCSLTC FC TG     RNL A EI  QV+                     +    +
Sbjct: 112 SQVGCSLTCKFCATGYMDRKRNLEAGEIYDQVVAIAR-------------QAEATFNAPL 158

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238
           +NIV MGMGEPL N+ NV KS+   +   GL+ S +RIT+ST+G    I ++ + E+   
Sbjct: 159 TNIVYMGMGEPLLNYANVLKSIEYITSPKGLNMSPKRITVSTAGIAKMITKLADDEVRFR 218

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA ++  RN ++PIN    L+ L DA   Y       RITFEY++    NDS +D
Sbjct: 219 LALSLHAANDKKRNQIMPINESNSLDNLADALN-YFYKKTGNRITFEYIVFNNFNDSLQD 277

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L +  K +PA++N+I +NP    ++  ++   +  F+  ++  G S  +R  RG DI
Sbjct: 278 AKELWEFCKRVPARVNIIEYNPIAEADFKNTEADRLDKFAAFLEDRGVSVHVRRSRGKDI 337

Query: 359 LAACGQLKSLS 369
            AACGQL +  
Sbjct: 338 DAACGQLANKE 348


>gi|254442505|ref|ZP_05055981.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
 gi|198256813|gb|EDY81121.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
          Length = 368

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 197/380 (51%), Gaps = 27/380 (7%)

Query: 1   MNFL-KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
           M +L +K  + G   E L+    ++G P    + R  Q+ +W+Y +    +  M+++ + 
Sbjct: 1   MKYLPEKPPIYGETLESLQARFAELGEP----KFRAKQVLEWLYKKRAETWDAMTNLPKP 56

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--------EK 111
           +R  L   F I   + V  K S D T K LL+      G    IETV I         E 
Sbjct: 57  LREKLAAAFEIAPSKRVLAKESSDETEKLLLQM-----GDNSMIETVVIRAPQIGVGQEN 111

Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
           SR T+C+S+QVGC+  C FC +G     R+L+  EI+ Q++    +       ED     
Sbjct: 112 SRKTICISTQVGCAYGCKFCASGLLGWKRDLSVGEIVSQLIHVCHM-------EDATTER 164

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
                    NIV+MGMGEP+ N+ N+  +L I +   GL+F  RRIT+STSG VP I  +
Sbjct: 165 ASEEIASFDNIVVMGMGEPMANYKNLLPALRILNADWGLNFGARRITISTSGVVPRILEL 224

Query: 232 GEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            +E     LA+SLH  +N++R+ ++P+NRKYPLE L+ A + Y        IT E+++++
Sbjct: 225 ADEREQFRLAVSLHGATNEVRDQIMPVNRKYPLEKLLPAIQKYAQTKGRM-ITLEFILIE 283

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
            IND+   A  L KI   + A +NLIP+N   G ++          F   +K  G S+ I
Sbjct: 284 EINDTLEQADALTKIALDLKAHVNLIPYNTVDGLDWKRPSITRQDVFYNRLKNRGVSATI 343

Query: 351 RTPRGLDILAACGQLKSLSK 370
           R  +G DI AACGQLK  ++
Sbjct: 344 RREKGHDIAAACGQLKLKTE 363


>gi|149277498|ref|ZP_01883639.1| hypothetical protein PBAL39_04903 [Pedobacter sp. BAL39]
 gi|149231731|gb|EDM37109.1| hypothetical protein PBAL39_04903 [Pedobacter sp. BAL39]
          Length = 349

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 199/371 (53%), Gaps = 24/371 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   KK  +  +   +L+E    +    +    R  Q+++W++ +  R F  MS++S+++
Sbjct: 1   MLTTKKTDIRSLELPQLQEHFKSM----QEPSYRAKQVYQWLWEKSARTFDEMSNLSKDL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L++H++I   E+ + + S D T K   R     I     +E V IP   R T CVSS
Sbjct: 57  RKKLDEHYAINVVEVNNSQFSNDHTIKNAFRLYDGNI-----VEGVLIPMDDRMTACVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSLTC FC TG     RNL A+EI  QV+L             I+     +    ++
Sbjct: 112 QVGCSLTCKFCATGYMDRKRNLNADEIYDQVVL-------------IDQQAKKNYNAPLT 158

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
           NIV MGMGEPL N+ NV KS+   +   GL+ S +RIT+ST+G    I ++G++     L
Sbjct: 159 NIVYMGMGEPLLNYANVMKSIERITAPDGLNMSYKRITVSTAGISKMIKKLGDDGAKFNL 218

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA ++  RN ++PIN    L+ L +A ++Y   +    IT+EY++    ND   DA
Sbjct: 219 ALSLHAANDKKRNEIMPINEHNSLKALEEALKYYFSKT-KNPITYEYIVFNDFNDEIEDA 277

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           + L K  K +P K+NLI +NP    +++ +    I  FS  +K  G ++ IR  RG DI 
Sbjct: 278 MELAKFCKHVPCKVNLIEYNPIQFADFINAQGDKIDAFSNYLKSQGVNTNIRRSRGKDID 337

Query: 360 AACGQLKSLSK 370
           AACGQL    +
Sbjct: 338 AACGQLAVKEQ 348


>gi|326798558|ref|YP_004316377.1| ribosomal RNA large subunit methyltransferase N [Sphingobacterium
           sp. 21]
 gi|326549322|gb|ADZ77707.1| Ribosomal RNA large subunit methyltransferase N [Sphingobacterium
           sp. 21]
          Length = 379

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 201/371 (54%), Gaps = 24/371 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N  KK  +  +  E+L+E+LL +G        R  QI++W++++   DF  M+++S+++R
Sbjct: 28  NMGKKVDIRSLSLEQLKESLLALG----EQSFRAKQIFEWLWMKSCVDFDNMTNLSKKLR 83

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L ++F I    I   + S D T K   +     I     IE V IP   R T CVSSQ
Sbjct: 84  DSLKENFIINAVRIDKSQYSADKTIKSTFKLFDNNI-----IEGVLIPTPDRMTACVSSQ 138

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGCSLTC FC TG     RNL A+EI  QV+L      +             +    +SN
Sbjct: 139 VGCSLTCKFCATGYMDRKRNLNADEIYDQVVLINKQAEE-------------NYSIPLSN 185

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           IV MGMGEPL N+ NV KS+   +   GL+ + +RIT+ST+G    I ++G++ +   LA
Sbjct: 186 IVYMGMGEPLLNYANVLKSIERITAPDGLNMAAKRITVSTAGIAKMIKKLGDDQVKFNLA 245

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++  RN ++PIN +  L+ L +A ++Y   +    +T+EY++    ND   DA 
Sbjct: 246 LSLHAANDAKRNEIMPINEQNSLKALAEALKYYFAKT-KNPVTYEYIVFNNFNDELEDAA 304

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L    K +P K+N+I +NP    ++  ++   I  F+  +++ G ++ +R  RG DI A
Sbjct: 305 ELASFCKHLPCKVNIIEYNPIAFADFENAEGDKIDRFAAFLRKRGITTNVRRSRGKDIDA 364

Query: 361 ACGQLKSLSKR 371
           ACGQL    K+
Sbjct: 365 ACGQLAVKEKQ 375


>gi|83589757|ref|YP_429766.1| hypothetical protein Moth_0906 [Moorella thermoacetica ATCC 39073]
 gi|123752954|sp|Q2RK16|RLMN_MOOTA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|83572671|gb|ABC19223.1| 23S rRNA m(2)A-2503 methyltransferase [Moorella thermoacetica ATCC
           39073]
          Length = 354

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 149/372 (40%), Positives = 210/372 (56%), Gaps = 27/372 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L G++ +ELEE  +++G        R  QI++W++ R  +  + MSD+ +  R  L 
Sbjct: 4   RIDLRGLLPQELEELAVRLG----EAPYRGRQIFRWLHARRAKGIEVMSDLPRAFRERLA 59

Query: 66  QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKS---RGTLCVSSQ 121
               +    +++  ++ DG TRK LL      +G    IE V +  K    R T C+SSQ
Sbjct: 60  LVAELPPVRVLNRLVAADGLTRKLLL-----GLGDGNSIECVLMIYKDGRRRNTACLSSQ 114

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ CSFC TG   L RNLTA EI+LQ L   + L +  G            G +ISN
Sbjct: 115 VGCAMGCSFCATGQGGLQRNLTASEIILQALALGAELAEGEG------------GNRISN 162

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           IV MGMGEPL N++ V K + I  D  G   S RRITLST G VP I R+  E   + LA
Sbjct: 163 IVFMGMGEPLNNYEAVMKGVRIFEDPSGWGISHRRITLSTCGIVPGIERLAREKPPLELA 222

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHAV+N+LR+ L+PINR+YPLE LI ACR Y  ++   R+TFEY ++ G+ND   DA 
Sbjct: 223 VSLHAVTNELRDKLMPINRRYPLEELIPACRRYAEITGR-RVTFEYALIAGVNDRREDAR 281

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L ++L+ + A +N+IP NP  G  +          F   ++ +G  + IR  RG DI A
Sbjct: 282 GLSRLLRDMLAFVNIIPLNPVAGSGFKGVPPAAARAFVALLQEAGLEAAIRDSRGQDIAA 341

Query: 361 ACGQLKSLSKRI 372
           ACGQL+  S+ +
Sbjct: 342 ACGQLRFASREV 353


>gi|311898630|dbj|BAJ31038.1| hypothetical protein KSE_52620 [Kitasatospora setae KM-6054]
          Length = 366

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 185/367 (50%), Gaps = 25/367 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA+ ++G        R  Q+    + R   D +  +DI    R  L +
Sbjct: 19  RHLADLSPAERKEAVAELG----EQPFRAKQLSNHYFGRMSADPESWTDIPAASRTKLTE 74

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   +SCD   TRK L +     +     +E+V +    R T+C+SSQ GC
Sbjct: 75  ALLPELMSVV-RHVSCDDDATRKTLWKLFDGTL-----VESVLMRYPDRVTMCISSQAGC 128

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q+           G  D+    +P    ++SN+V 
Sbjct: 129 GMNCPFCATGQAGLTRNLSTAEIVEQI---------ASGMRDLRTGAVPGGEARLSNVVF 179

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    G   S+R IT+ST G VP + R  +E +   LA+
Sbjct: 180 MGMGEPLANYNRVLSAIRRLTDPSPDGFGLSQRGITVSTVGLVPAMHRFADEGLSCRLAL 239

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ ++ ++DA  +Y   S   R++ EY ++K IND    A  
Sbjct: 240 SLHAPDDELRDELVPVNTRWKVDEVLDAAWNYAEKSGR-RVSIEYALIKDINDQAWRADL 298

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++++     +NLIP NP PG ++  S  +D   F   ++  G  + +R  RG +I  A
Sbjct: 299 LGRLIRNRRVHVNLIPLNPTPGSKWTASRPEDEREFVRRLQAHGVPTTVRDTRGQEIDGA 358

Query: 362 CGQLKSL 368
           CGQL + 
Sbjct: 359 CGQLAAA 365


>gi|219682208|ref|YP_002468592.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|219621941|gb|ACL30097.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|311086023|gb|ADP66105.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           LL01 (Acyrthosiphon pisum)]
 gi|311086597|gb|ADP66678.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           TLW03 (Acyrthosiphon pisum)]
 gi|311087180|gb|ADP67260.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           JF99 (Acyrthosiphon pisum)]
 gi|311087708|gb|ADP67787.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           JF98 (Acyrthosiphon pisum)]
          Length = 363

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/364 (43%), Positives = 211/364 (57%), Gaps = 24/364 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+ + R+ L+  L+ +G         T Q+  WIY     DF  M +IS + R  
Sbjct: 12  ISKINLLDLNRQNLKYFLISLG----AKNFCTEQVMSWIYNYYCDDFNKMLNISIKTRKK 67

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +   I   E ++EKIS DGT KW+            +IETVY+PEK R TLCVSSQ+G
Sbjct: 68  LYEKSYIFASEFIEEKISYDGTIKWI------TDINNQKIETVYMPEKKRSTLCVSSQIG 121

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL C FC TG +   RNL   EI+ Q+  A   L +             ++ + I+NIV
Sbjct: 122 CSLKCHFCATGQEGFQRNLKVSEIIAQIWQANKRLKE------------KNIKKNITNIV 169

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N  NV  +L+I  D  G   SKRR+TLSTSG VP + ++   I V LAISL
Sbjct: 170 FMGMGEPLLNLKNVVSALTIILDEYGFGLSKRRVTLSTSGIVPALDKLRNMIDVSLAISL 229

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301
           HA ++ +RNI++PINRKY +  ++ +   Y   SNA R  IT EYVML  INDS   A  
Sbjct: 230 HAPNDFIRNIIMPINRKYNISSVLSSALKYFKYSNANRGGITIEYVMLDRINDSNEHARQ 289

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +L  IP+KINLIP+N + G  +LCS+   I  F+  +++ G+++ IR  RG DI AA
Sbjct: 290 LSVLLSKIPSKINLIPWNSFSGPSFLCSNTDRINMFANILRKKGFTTTIRKNRGEDINAA 349

Query: 362 CGQL 365
           CGQL
Sbjct: 350 CGQL 353


>gi|196228869|ref|ZP_03127735.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
 gi|196227150|gb|EDY21654.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
          Length = 359

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 129/370 (34%), Positives = 195/370 (52%), Gaps = 36/370 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           +  +  +E+ E L  +G P      R  Q+ +WIY + ++ F  MSD+   +R  L    
Sbjct: 10  IKSLTLDEVSERLRTLGQPG----YRAKQVVQWIYGKRVKSFAEMSDLPAGLRQQLAAEL 65

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--------SRGTLCVSS 120
           S    E V    S D T K+L R     +     IE+V IP           R T+C+S+
Sbjct: 66  SFSGLEPVRTLGSKDTTLKYLFRLDDGAL-----IESVLIPASPALYGEASDRRTICIST 120

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+  C FC +G     RNL   EI+ QVL    L G+                 KI+
Sbjct: 121 QVGCAYGCKFCASGLDGWSRNLQPGEIVDQVLRVEELSGE-----------------KIN 163

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           NIV MGMGEP+ NF N+ K+++I +   G+    R IT+STSG  P I  + ++ + V L
Sbjct: 164 NIVFMGMGEPMANFTNLMKAITIINAPWGIGLGARHITISTSGLAPQIKLLADQPLQVRL 223

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           AISLH  +N++R  ++P+NRKYPLE+L++AC +Y        +TFEY++++ +ND P DA
Sbjct: 224 AISLHGATNEVREQIMPVNRKYPLEVLLEACAYYTQRKKQW-LTFEYILIEEVNDRPEDA 282

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+K+ + + AK+N IP+N   G ++    +     F   ++     + IR  +G DI 
Sbjct: 283 AALVKVARQVKAKVNCIPYNKVEGLDWTRPSEARQDAFMAVLEAGRIPATIRREKGHDIA 342

Query: 360 AACGQLKSLS 369
           AACGQL+  +
Sbjct: 343 AACGQLRRQT 352


>gi|67921029|ref|ZP_00514548.1| Conserved hypothetical protein 48 [Crocosphaera watsonii WH 8501]
 gi|67857146|gb|EAM52386.1| Conserved hypothetical protein 48 [Crocosphaera watsonii WH 8501]
          Length = 341

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 192/367 (52%), Gaps = 31/367 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L +E+L+G   +EL   + + G P      R  Q+ +W+Y +G+R    +S   +  R  
Sbjct: 3   LTQETLLGKSVDELTTWIKQQGQPG----YRGKQLHQWLYQKGVRSLTEISVFPKAFRED 58

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
               + I    I    I+ D TRK+LL      I     IETV IP   R T+CVSSQVG
Sbjct: 59  FKD-YPIGRSNINHCTIAPDKTRKYLLSLADGLI-----IETVGIPTAKRLTVCVSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG  +  RNL++ EI+ Q+L  +                      ++S++V
Sbjct: 113 CPMNCDFCATGKGEYDRNLSSAEIVDQILTVQE-----------------DFQERVSHVV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
            MGMGEPL N   V K++ I +  +G    +R +T+ST G    I  +   ++ V  A+S
Sbjct: 156 FMGMGEPLLNTKEVVKAVKILNQDVG--IGQRSLTISTVGIPKKILELAHHQLQVTFAVS 213

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +  LR  L+P  + YPL  L+  CR Y  ++   R++FEY++L G+ND P  A+ L
Sbjct: 214 LHAANQKLREQLIPSAKFYPLPKLLADCRKYVEITGR-RVSFEYILLGGVNDLPEQAIEL 272

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K LKG  + +NLIP+NP    +Y  S+ + I  F   ++    +  +R  RGL+  AAC
Sbjct: 273 AKCLKGFQSHVNLIPYNPIEEVDYQRSNAESINIFKTILEEKNIAVSVRYSRGLEANAAC 332

Query: 363 GQLKSLS 369
           GQL+++S
Sbjct: 333 GQLRAMS 339


>gi|326776285|ref|ZP_08235550.1| radical SAM enzyme, Cfr family [Streptomyces cf. griseus XylebKG-1]
 gi|326656618|gb|EGE41464.1| radical SAM enzyme, Cfr family [Streptomyces cf. griseus XylebKG-1]
          Length = 368

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 120/369 (32%), Positives = 181/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             +  +   E +EA+   G        R  Q+ +  + R   D    ++I    R  L +
Sbjct: 20  RHIADLTPAERKEAVAATG----EKPFRAQQLSQHYFARYAHDPAEWTNIPAGSREKLAE 75

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   ++   ISCD   TRK L +     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  ALFPDLMSVM-RHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   RI+ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWNVREVLDAAWEYADKSGR-RISIEYALIRDINDQAWRGDR 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  A
Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAAAER 368


>gi|218295831|ref|ZP_03496611.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23]
 gi|218243569|gb|EED10097.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23]
          Length = 349

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 135/341 (39%), Positives = 192/341 (56%), Gaps = 21/341 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R +QI  W++ RG+ DF  M+D+ + +R  L + + +   ++V+   S DG+ K+L   
Sbjct: 17  YRKAQIAHWVFARGVLDFAEMTDLPKGLREALAREWRVSEFQLVEAYPSKDGSVKYLFTL 76

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                    + E VY+P K+R T+C+SS VGC   C+FC TG     RNLTA EIL Q+L
Sbjct: 77  LD-----GKKTEAVYMPYKNRKTVCLSSMVGCPAGCTFCATGALGFGRNLTAAEILSQLL 131

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                 G  P              R+I N+V+MGMGEPL N  NV K++ +      L+ 
Sbjct: 132 AIAHHQGLSP--------------REIRNVVLMGMGEPLLNLTNVLKAIRVMLHPKALAM 177

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           S RRITLST G    I R+ EE +GV LA+SLHA  ++ R  ++P   +YP+  ++ A R
Sbjct: 178 SPRRITLSTVGIPRGILRLAEEDVGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMAAVR 237

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            Y   +   R+TFEY +LKG+ND    A  L K+LKGI A +NLIPFNPW       + +
Sbjct: 238 RYYERTKR-RVTFEYTLLKGLNDHLWQARLLAKLLKGISAHVNLIPFNPWENAPVEGTPK 296

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
             I+ F+E ++R G S+ IR  RG D+ AACGQL   + + 
Sbjct: 297 AGILAFAEELRRLGVSTSIRWSRGRDVGAACGQLALKAPKA 337


>gi|317133046|ref|YP_004092360.1| radical SAM enzyme, Cfr family [Ethanoligenens harbinense YUAN-3]
 gi|315471025|gb|ADU27629.1| radical SAM enzyme, Cfr family [Ethanoligenens harbinense YUAN-3]
          Length = 342

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 191/368 (51%), Gaps = 30/368 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  L  M  EEL      +G P      +  Q++ W++ RG+  F  M+D S+  R +L
Sbjct: 3   EKRDLKSMDIEELGAFFRALGAPA----YKAKQVFAWLH-RGVGSFDEMTDQSKAFRAVL 57

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +H  I   + V    S  DGT K+L             +ETV +      ++C+S+Q G
Sbjct: 58  EEHALITRVQTVRRLESVLDGTVKYLFALSD-----GECVETVMMRYSYGDSVCISTQAG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +    L R+L   E+L Q+L                       GRK+S++V
Sbjct: 113 CRMGCGFCASTLGGLHRSLAPSEMLDQILAV-----------------TKDTGRKVSHVV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEPL N++NV K L + S   GL+ S R ++LST G V  I R+ EE + + L++S
Sbjct: 156 LMGIGEPLDNYENVVKFLHLLSCKGGLNMSLRHVSLSTCGLVDGIRRLMEEKLQLTLSVS 215

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++ +R+ ++P+NRK+ +  L+ ACR Y   +   RI+FEY M+ G+ND+P  A  L
Sbjct: 216 LHAPNDAIRSSIMPVNRKWGVNTLLAACRDYIEATGR-RISFEYAMIDGVNDTPACAKEL 274

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
              L+G+   +NLIP NP     Y  S  + +  F   +   G +  +R   G DI A+C
Sbjct: 275 AARLRGMLCHVNLIPANPVKERSYQKSPAEKVERFRRLLAGFGLTVTVRRTLGADIQASC 334

Query: 363 GQLKSLSK 370
           GQL+  ++
Sbjct: 335 GQLRQAAR 342


>gi|224023722|ref|ZP_03642088.1| hypothetical protein BACCOPRO_00438 [Bacteroides coprophilus DSM
           18228]
 gi|224016944|gb|EEF74956.1| hypothetical protein BACCOPRO_00438 [Bacteroides coprophilus DSM
           18228]
          Length = 350

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 194/369 (52%), Gaps = 29/369 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+G   +EL + +L +G+P    +    QI  W+Y R +     M+++S + R  L 
Sbjct: 5   KAPLLGKTLDELTQIVLDLGMP----KFTAGQIASWLYGRKVASIDEMTNLSVKNRERLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + + +     V E  S DGT K+L R P         +E+VYIP+  R TLCVSSQVGC 
Sbjct: 61  ECYEVGATAPVHEMRSVDGTVKYLFRTP-----EGDYVESVYIPDADRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LTA +IL Q+                           ++N+V M
Sbjct: 116 MNCKFCMTGKQGYTNSLTAAQILNQIYSIPERD-------------------TLTNVVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP  N D V ++L I + S G ++S +RIT+S+ G    + R  +E    LAISLH+
Sbjct: 157 GMGEPFDNLDEVLRALEILTASYGYAWSPKRITVSSVGLRKGLRRFLDESDCHLAISLHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  ++D  R Y   S  RR++FEY++ KG+NDS   A  L+++
Sbjct: 217 PFPAQRQELMPAEKAFSIVEIVDILRQY-DFSKQRRLSFEYIVFKGVNDSLIYAKELVRL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  ++NLI F+  P  +   +D + ++ F + + + G  + IR  RG DI AACG L
Sbjct: 276 LRGLDCRMNLIRFHAIPNVDLEGADMETMLAFRDYLTQHGLFATIRASRGEDIFAACGML 335

Query: 366 KSLSKRIPK 374
            +  ++  K
Sbjct: 336 STAKQQANK 344


>gi|291276281|ref|YP_003516053.1| radical-SAM-proteins [Helicobacter mustelae 12198]
 gi|290963475|emb|CBG39305.1| Putative radical-SAM-proteins [Helicobacter mustelae 12198]
          Length = 379

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 139/380 (36%), Positives = 216/380 (56%), Gaps = 42/380 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +++      +LE  L            R  QI+ W+YV+  +DF  M ++ + +++ L++
Sbjct: 17  QNIYDYTLRQLEGLL--------EPSFRAKQIYHWLYVQYAQDFDVMHNLPKALKNKLSK 68

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-------------EKSR 113
            + I + EI+  + SCDGT+K+L +            E+V I                SR
Sbjct: 69  DYRIKHLEIMKVETSCDGTKKYLFKTLD-----GHTFESVLIKMREEKIDCEGRIIHGSR 123

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T CVSSQ+GC + C+FC+T     VRNL++ EI+ QVL  +      P           
Sbjct: 124 YTFCVSSQIGCKVGCAFCFTAKGGFVRNLSSGEIVEQVLQLKKDNSLAP----------- 172

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               K  NIV MGMGEPL N +NV +++ I S+  GLS S RR T+STSG  P IA++GE
Sbjct: 173 ---EKRVNIVFMGMGEPLNNLENVAQAIRIMSELDGLSISPRRQTISTSGIAPKIAKLGE 229

Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
            ++GV LAISLHAV ++LR+ L+P+N+ Y ++ +IDA R +P +   +++ FEY+++K +
Sbjct: 230 LDLGVQLAISLHAVDDELRSRLIPMNKAYNIKSIIDAVRQFP-VDTRKKVMFEYLVIKDV 288

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND  + A  L+K+L GI AK+NLI FNP  G E+   + + +  F++ + + G  + IR 
Sbjct: 289 NDDLKSAKILLKLLDGIRAKVNLILFNPHEGSEFQRPEMEQVKKFADFLVQRGLLATIRE 348

Query: 353 PRGLDILAACGQLKSLSKRI 372
            RG+DI AACGQL+    ++
Sbjct: 349 SRGIDISAACGQLREKETKV 368


>gi|304437062|ref|ZP_07397025.1| cfr family radical SAM enzyme [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370013|gb|EFM23675.1| cfr family radical SAM enzyme [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 346

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 193/363 (53%), Gaps = 26/363 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++ G M+ EL +AL + GIP    R R  QI +W+Y RG   F  M ++ + +R  L + 
Sbjct: 2   NIFGWMKTELADALREEGIP----RFRADQIIRWMYQRGAVSFDVMDNLPKLLRAQLAER 57

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           FSI  P++     S DG T K L  F           ETV +      ++CVS+Q GC +
Sbjct: 58  FSIERPQVGARLTSADGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCVSTQAGCRM 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    L RNLT  EI  QV+     L                 G ++  IV+MG
Sbjct: 113 GCAFCASTLHGLARNLTVGEIAAQVIGMADYLRQ--------------EGARVDTIVVMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEP+ N+DNV  +L +      +  S R +TLSTSG VP I R+ EE + + L+ISLHA
Sbjct: 159 SGEPMENYDNVIGALRLLHAEETIGLSYRGMTLSTSGIVPGILRLAEEGLPISLSISLHA 218

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + +LR+ L+P+NR YP+  ++ A   Y   +   R+T+EY++++ +ND  R+A  L ++
Sbjct: 219 PTEELRSSLMPVNRMYPMAEVLRAAELYAARTKR-RVTYEYILIRDVNDGVREAEQLARL 277

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G  A +NLIP +P          ++ ++ F   ++    ++ +R   G DI AACGQL
Sbjct: 278 LRGQLASVNLIPIDPVAERHLFRPPRETVLRFQRILEAHHVTATVRREMGTDIQAACGQL 337

Query: 366 KSL 368
           +S 
Sbjct: 338 RSR 340


>gi|182435651|ref|YP_001823370.1| hypothetical protein SGR_1858 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|205829903|sp|B1VYT2|RLMN_STRGG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|178464167|dbj|BAG18687.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 368

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 119/369 (32%), Positives = 181/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             +  +   E +EA+   G        R  Q+ +  + R   D    ++I    R  L +
Sbjct: 20  RHIADLTPAERKEAVAATG----EKPFRAQQLSQHYFARYAHDPAEWTNIPAGSREKLAE 75

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   ++   ISCD   TRK L +     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  ALFPDLMSVM-RHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP + R  +E     LA+
Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   RI+ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWNVREVLDAAWEYADKSGR-RISIEYALIRDINDQAWRGDR 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG    +NLIP NP PG ++  S  +D   F E +   G    +R  RG +I  A
Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAVAAHGVPVTVRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAAAER 368


>gi|319955823|ref|YP_004167086.1| 23S rRNA m(2)a-2503 methyltransferase [Nitratifractor salsuginis
           DSM 16511]
 gi|319418227|gb|ADV45337.1| 23S rRNA m(2)A-2503 methyltransferase [Nitratifractor salsuginis
           DSM 16511]
          Length = 370

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 138/379 (36%), Positives = 208/379 (54%), Gaps = 42/379 (11%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N  +K  +    +EEL   +            R  QI+ WIY +    F+ M+++ + +R
Sbjct: 10  NDSEKRIIHDYTKEELGREI--------QPAFRAKQIYNWIYHKHADSFEEMANLPKTMR 61

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI------------- 108
             L + + +   E+V ++ S DG+ K+L R           +E V +             
Sbjct: 62  QELAKKYELHPLEMVSKQESRDGSIKYLFRLHD-----GHTVEAVLLLMKEAQYHEDGTL 116

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
               R T+C+SSQVGC + C+FC T     +RNL+A EI+ QVL            E  +
Sbjct: 117 KHHRRYTVCISSQVGCKVGCAFCLTAKGGFIRNLSAGEIVDQVL------------EIYK 164

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
              IPS  R   N+V MGMGEPL N DNV K++ I +D  G+S S  R T+STSG    I
Sbjct: 165 DQNIPSNHR--VNLVYMGMGEPLDNLDNVAKAVKIFADMDGMSISPNRQTISTSGLSSKI 222

Query: 229 ARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            ++G  ++GV LAISLHAV ++LR  L+PIN+ Y +  +I+A R++P ++  +++ FEY+
Sbjct: 223 EKLGRMDLGVNLAISLHAVDDELREKLMPINKAYNIASIIEAVRNFP-VNQRKKVLFEYL 281

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347
           ++K +ND    A  L+K+L G+ AK+NLI FNP+PG E+   + +D+  F E +   G  
Sbjct: 282 VIKHVNDDIASAKKLVKLLNGLKAKVNLIYFNPYPGTEFERPEPEDMKRFQEYLLSKGVL 341

Query: 348 SPIRTPRGLDILAACGQLK 366
             IR  +GLDI AACGQL+
Sbjct: 342 CTIRESKGLDISAACGQLR 360


>gi|310659155|ref|YP_003936876.1| fe-s-cluster redox enzyme [Clostridium sticklandii DSM 519]
 gi|308825933|emb|CBH21971.1| putative Fe-S-cluster redox enzyme [Clostridium sticklandii]
          Length = 341

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/363 (35%), Positives = 195/363 (53%), Gaps = 30/363 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K   + +   ELEE ++K+G      + R  QI+  + V+GI  F  + +IS+ ++  L 
Sbjct: 2   KSDALSLTFSELEEEIVKLG----EQKFRAKQIYPKL-VQGISSFDEIGNISKVLKEKLK 56

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +   I    +     S  DGTRK+LL+   + I     IE V +  K   ++C+SSQVGC
Sbjct: 57  ERLYISKVSVYKVLTSELDGTRKYLLQLDDKNI-----IEAVLMRYKHGLSICISSQVGC 111

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + CSFC +    LVRNLTA E++ Q+L  ++ + +                 +ISN+VM
Sbjct: 112 LMGCSFCASTIDGLVRNLTAGEMIGQILAVQNDVKE-----------------RISNVVM 154

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MG GEPL NFDN+ K L I      L+   R IT+ST G VP +  + +    + LAISL
Sbjct: 155 MGSGEPLDNFDNLIKFLDIVHQEDSLNIGYRHITISTCGVVPKVNELAKLGYPINLAISL 214

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H  +++ R I++P+   YP++ +I A + Y   +  RR+TFEY ++KG+NDS  DA  L 
Sbjct: 215 HETTHEKRKIIMPVENAYPIDSVIKAAKDYAN-TTKRRVTFEYALIKGVNDSNEDANRLS 273

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKG+   +NLIP N      Y   D+  I  F   +K +   + +R   G DI  ACG
Sbjct: 274 KLLKGMLCHVNLIPVNTVEERTYKRPDKAAINAFLSVLKSNHIEATVRREMGKDINGACG 333

Query: 364 QLK 366
           QL+
Sbjct: 334 QLR 336


>gi|254457165|ref|ZP_05070593.1| radical SAM enzyme, Cfr family [Campylobacterales bacterium GD 1]
 gi|207085957|gb|EDZ63241.1| radical SAM enzyme, Cfr family [Campylobacterales bacterium GD 1]
          Length = 359

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 211/379 (55%), Gaps = 42/379 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SL+   ++EL+  +            R +QI+ W+Y +    F  M ++ + +R  L 
Sbjct: 5   KPSLLDFTKKELQTLIK--------PGFRVNQIFGWLYHQYAESFDDMKNVPKALREELA 56

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------------- 112
           + + +    IV++++S DGT K+LL+           +E V++  K              
Sbjct: 57  EKYVVNPLTIVNKEVSTDGTIKYLLQMQD-----GKTMEAVWLKMKDTQLDENAEVIQEA 111

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           + T+CVS+QVGC + CSFC T      R+LTA EI+ QV+  +                 
Sbjct: 112 KYTICVSTQVGCKVGCSFCLTAKGGFTRDLTAGEIVAQVVTLKCDNDH------------ 159

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
                +  NIV MGMGEPL N DN+ K++ I  +  GL  S +R T+STSG    I ++G
Sbjct: 160 --KHNRKINIVYMGMGEPLDNLDNLAKAIEIFKEDDGLCISGKRQTVSTSGLSNKIDQLG 217

Query: 233 E-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           + ++GV +AISLHAV ++LR  L+P+N+ + +  +I+A + +P +   +R+ FEY+++KG
Sbjct: 218 KMDLGVHIAISLHAVDDELRTELIPMNKAHNINSIIEAVKRFP-IDTRKRVMFEYLVIKG 276

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
            ND    A  L+K+L GI AK+NLI FNP+PG +Y    ++D+VTF++ + + G    IR
Sbjct: 277 KNDDLGSAKKLVKLLHGIKAKVNLIYFNPYPGTDYDRPSKEDMVTFADYLIKHGLLCTIR 336

Query: 352 TPRGLDILAACGQLKSLSK 370
             +G+DI AACGQLK  ++
Sbjct: 337 DSKGIDISAACGQLKEKTE 355


>gi|154250366|ref|YP_001411191.1| ribosomal RNA large subunit methyltransferase N [Fervidobacterium
           nodosum Rt17-B1]
 gi|205829758|sp|A7HNQ1|RLMN_FERNB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|154154302|gb|ABS61534.1| radical SAM enzyme, Cfr family [Fervidobacterium nodosum Rt17-B1]
          Length = 348

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 201/368 (54%), Gaps = 32/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +++++    EEL +   KIG+     + R  Q+W WIY +   DF  M+++S+E R+ L+
Sbjct: 2   RKNILDFSYEELVDEFSKIGLE----KFRVDQVWDWIYKKHEFDFDKMTNLSKEHRNTLS 57

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + F I  PE++D +IS  D T K+L +           IE+V +    R T C+S+QVGC
Sbjct: 58  ERFYIYVPELLDMQISQIDKTTKFLWKLEDDNT-----IESVLLFHPDRVTACISTQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
              C+FC TG    VRNL+A EI+ Q++                          I NIV 
Sbjct: 113 PAKCAFCATGQSGFVRNLSAGEIVSQIIAMEKHRK-----------------VNIGNIVY 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISL 243
           MGMGEPL N+  V KS+ + +   G + S RRI++ST G    I  + +++  V LAISL
Sbjct: 156 MGMGEPLLNYKEVVKSVKMLNHKKGKNISMRRISISTVGIPEKIVELAQDLPEVKLAISL 215

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N  R+I+VP+N+KY +E +I + + Y  ++   R+TFEY++++  ND   DA  L 
Sbjct: 216 HAPNNYKRDIIVPMNKKYSVEEIIQSAKEYQKIT-KNRVTFEYILIREFNDFVDDAEKLA 274

Query: 304 KILKGIPAKINLIPFNPWP---GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           ++LKG+ A +NLIP NP P     ++       I  F E + +    + IR  +G DI A
Sbjct: 275 ELLKGMGAYVNLIPVNPVPSSGELKFERPHHWAIERFKEVLDKHNIENEIRREKGTDIDA 334

Query: 361 ACGQLKSL 368
           ACGQL+  
Sbjct: 335 ACGQLRRR 342


>gi|255533736|ref|YP_003094108.1| radical SAM enzyme, Cfr family [Pedobacter heparinus DSM 2366]
 gi|255346720|gb|ACU06046.1| radical SAM enzyme, Cfr family [Pedobacter heparinus DSM 2366]
          Length = 348

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 197/370 (53%), Gaps = 24/370 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M    K  +  +   +L++  + +  P      R  Q+++W++ +  R F  MS++ +++
Sbjct: 1   MPATNKIDIRSLDLSQLQQHFIAMQEPA----YRAKQVYQWLWEKSARSFAEMSNLPKDL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L+  ++I   E+   +IS D T K   R     I     +E V IP   R T CVSS
Sbjct: 57  RAKLDAQYAINVVEVNKSQISNDHTIKNAFRLYDGNI-----VEGVLIPMDDRMTACVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSLTC FC TG     RNL A+EI  QV+L             I+     +    ++
Sbjct: 112 QVGCSLTCKFCATGYMDRKRNLNADEIYDQVVL-------------IDQQAKKNYNAPLT 158

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           NIV MGMGEPL N+ NV KS+   +   GL+ S +RIT+ST+G    I ++G++ +   L
Sbjct: 159 NIVYMGMGEPLLNYANVLKSIERITAPDGLNMSYKRITVSTAGISKMIKKLGDDGVKFNL 218

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA ++  RN ++PIN    L+ L ++ ++Y   +    +T+EY++    ND   DA
Sbjct: 219 ALSLHAANDKKRNEIMPINEHNSLKALAESLKYYFAKT-KNPVTYEYIVFNHFNDEIEDA 277

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           + L K  K +P K+NLI +NP    +++ ++   I  FS  +K  G ++ IR  RG DI 
Sbjct: 278 MELAKFCKHVPCKVNLIEYNPIQFADFINAEGDKIDAFSNYLKSQGITTNIRRSRGKDID 337

Query: 360 AACGQLKSLS 369
           AACGQL    
Sbjct: 338 AACGQLAVKE 347


>gi|310644715|ref|YP_003949474.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus
           polymyxa SC2]
 gi|309249666|gb|ADO59233.1| Ribosomal RNA large subunit methyltransferase N [Paenibacillus
           polymyxa SC2]
          Length = 365

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 132/385 (34%), Positives = 211/385 (54%), Gaps = 26/385 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +KKES+ G+  ++L   LL+ G  +     R  Q+W  +Y + I DF  M+++ +    L
Sbjct: 1   MKKESIYGLTLDQLTAWLLEHGYKKS----RALQVWDALYRKRITDFAAMTEVHENCTRL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++FSI   E   ++ S DGT K+L R     +     IETV +  K   ++CV++QVG
Sbjct: 57  LAENFSIETLEEHVKQQSADGTVKFLFRLQDGNL-----IETVLMRHKFGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+L++ EI+ Q++  +  L                 G ++S++V
Sbjct: 112 CNIGCSFCASGLLKKSRDLSSGEIVGQIMKVQLYLDQ------------ERPGDRVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  NF N+   + +  D  GL+  +R IT+STSG    I    + ++ V LAIS
Sbjct: 160 VMGIGEPFDNFVNLSDFIRVIKDHKGLAIGQRHITVSTSGLADKIIEFADSDLHVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N++R  ++ INR  P+E L+ A  +Y   +N  RIT EY++LK +ND    AL L
Sbjct: 220 LHAPNNEIRTRIMKINRAIPIEKLMQAIDYYLDKTNR-RITLEYILLKDVNDGKEHALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            +++  +   A +NLIP+NP     +Y  S+ + I  F + +K+ G S  +R   G+DI 
Sbjct: 279 AELVGHRRNLANVNLIPYNPVDEHSQYQRSESESITGFYDVLKKQGISCSVRLEHGVDID 338

Query: 360 AACGQLKSLSKRIPKVPRQEMQITG 384
           AACGQL+S   R      +  +   
Sbjct: 339 AACGQLRSKQIRKDANSSRNAEREA 363


>gi|205829720|sp|Q6MDD0|RLMN2_PARUW RecName: Full=Ribosomal RNA large subunit methyltransferase N 2;
           AltName: Full=23S rRNA m2A2503 methyltransferase 2
          Length = 358

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 131/362 (36%), Positives = 187/362 (51%), Gaps = 26/362 (7%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
               ++L E L   G           QI  WIY +G+  +  MS++SQ +R  L +H  +
Sbjct: 5   DFDHQKLVEWLKAHG----EKEFHAKQILSWIYQKGVLSWDKMSNLSQSLREKLAKHIRL 60

Query: 71  IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
              E+V    S D  T K+L R     +     +E+V I    R T+CVSSQVGC   C+
Sbjct: 61  PVLELVRYTESIDQETIKFLWRLRDGNL-----VESVLILSGIRRTVCVSSQVGCPAKCA 115

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +G Q   RNL   EI+ Q+L   +               + S G K+S++V MGMGE
Sbjct: 116 FCASGQQGFFRNLRPTEIIEQILQINAW--------------LSSKGEKVSHVVYMGMGE 161

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           PL N+++V  S+ + S     + S+RRIT+ST G V  I R+ +E + V L +SLHA + 
Sbjct: 162 PLKNYESVVASIRVLSHPDFCNISQRRITVSTVGVVEGIKRLSKEGLKVNLVLSLHAPNQ 221

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
            +R  ++P  RKYPLE ++++   Y   +    ITFEY +L GIND P  A  L  +LKG
Sbjct: 222 HIRKKIIPYARKYPLEEILESMDEYAQKTKRD-ITFEYTLLAGINDHPDHAHELAHLLKG 280

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
               +NLIP+NP PG      ++K I  F   +  S   +  R  +G DI AACGQL   
Sbjct: 281 KQCTVNLIPYNPIPGLRLKRPEKKAIKQFRSVLYGSHIVNTCRYTKGDDIGAACGQLALQ 340

Query: 369 SK 370
            +
Sbjct: 341 ER 342


>gi|302334811|ref|YP_003800018.1| 23S rRNA m(2)A-2503 methyltransferase [Olsenella uli DSM 7084]
 gi|301318651|gb|ADK67138.1| 23S rRNA m(2)A-2503 methyltransferase [Olsenella uli DSM 7084]
          Length = 359

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 184/371 (49%), Gaps = 28/371 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++  L  M   +L E L  +G P      R  QI +W++ + +  F  MS++ + +R  L
Sbjct: 16  QRRDLRAMSHGQLLELLGDLGQPG----FRAKQIEEWVWEKNVSSFDDMSNLPKSLRAHL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +Q  S+  P  V  + S DG+RK+LLR+        V +E V +P +++  +C S+Q GC
Sbjct: 72  SQACSLGGPREVGRQQSSDGSRKYLLRYED-----GVSVECVGMPTRNKLAVCASTQAGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +++C+FC TG   L R+LTA EI  QV+ AR                      +++++V+
Sbjct: 127 AMSCAFCATGAAGLTRSLTAGEIYEQVMHARD-----------------DFNARVTSVVL 169

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MG GEP  N+D    +L   +   G     R +T+ST G +P I R   E     LA+SL
Sbjct: 170 MGQGEPFMNYDATLGALRRLNSPEGAGIGARHLTVSTCGIIPMIKRFAGEPEQFTLAVSL 229

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R++L+P  RKY L  L +    Y   +   R T+EY ++KG+NDS  +   L 
Sbjct: 230 HSAVQRTRDMLMPGVRKYSLLHLYEIMEEYVDKTGR-RPTYEYALIKGVNDSEDEMGALC 288

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
              +G  A +NLI  N      +  S  +    F   +   G  + IR  RG DI AACG
Sbjct: 289 DFCRGNLAHVNLIRLNDVKDSPFQPSSDRRAEEFVRRLGAVGVDATIRNSRGSDIDAACG 348

Query: 364 QLKSLSKRIPK 374
           QL+   +R+ +
Sbjct: 349 QLRQEMERLSR 359


>gi|16331844|ref|NP_442572.1| hypothetical protein sll0098 [Synechocystis sp. PCC 6803]
 gi|3287936|sp|Q55880|RLMN_SYNY3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|1208474|dbj|BAA10642.1| sll0098 [Synechocystis sp. PCC 6803]
          Length = 350

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 127/354 (35%), Positives = 184/354 (51%), Gaps = 31/354 (8%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
            + +   G P      R  QI +W+Y +G R    M+D+ +  R   N H+ I    I  
Sbjct: 17  TDWVQTTGQPA----YRGKQIHQWLYQKGARSLTAMTDLPKVWREK-NVHYPIGRSVIDH 71

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
             ++ D TRK+LLR     I     IETV IP   R T+CVSSQVGC++ C+FC TG   
Sbjct: 72  CAVAPDHTRKYLLRLADGLI-----IETVGIPSSKRLTVCVSSQVGCAMDCNFCATGKGG 126

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
            +RNL + EI+ QVL  +    +                 ++SN+V MGMGEPL N   V
Sbjct: 127 FIRNLESHEIVDQVLTVQEEFHE-----------------RVSNVVFMGMGEPLLNLPQV 169

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVP 256
            K++   +  +G    +R +T+ST G    I ++ +  + V  A+SLHA +  LR  L+P
Sbjct: 170 VKAVECLNQVVG--IGQRALTISTVGLPGKIRQLADRHLQVTFAVSLHAPNQTLRQSLIP 227

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
             R YPLE L+  CR Y   +  RR+TFEYV+L G+ND P  A  L + L+G    +NLI
Sbjct: 228 SARHYPLEQLLADCRAYVE-TTGRRVTFEYVLLAGVNDQPVHAEELAQKLRGFQTHVNLI 286

Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           P+NP    +Y    +  I  F++ +     +  +R  RG+   AACGQL++  K
Sbjct: 287 PYNPISEVDYQRPTEAQINQFAQVLSDHRIAVSVRYSRGVQADAACGQLRASRK 340


>gi|237738438|ref|ZP_04568919.1| radical SAM domain-containing protein [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420318|gb|EEO35365.1| radical SAM domain-containing protein [Fusobacterium mortiferum
           ATCC 9817]
          Length = 356

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 204/374 (54%), Gaps = 28/374 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + ++ELEE ++ +G+     +    Q++ W++ + +RD   ++++S + R LL
Sbjct: 7   EKINLLNLNQQELEEFVVSLGM----KKFYGKQLFNWLHKKIVRDLNEVTNLSLKDRELL 62

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQV 122
            +   I +  ++  +IS  D T K+L +           IETV +  K  R TLC+SSQV
Sbjct: 63  TEKAYIPFLNLLKHQISKIDKTEKFLFQLED-----GNTIETVLLRHKDKRNTLCISSQV 117

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C+FC TG    VR+L   EI+ QV                    +   G  ++NI
Sbjct: 118 GCAVKCAFCATGQGGFVRDLNVSEIINQVYTIER--------------RLVKQGTNLNNI 163

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAI 241
           V MGMGEPL N  NV K+L I S+  G++ SKR+IT+STSG VPNI + + E++ V LAI
Sbjct: 164 VFMGMGEPLLNLTNVLKALEILSNENGINISKRKITISTSGIVPNIEKILLEKVPVELAI 223

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+  N+ R+ ++PINR+YPLE L    + Y   +   RITFEY+++   N S  DA  
Sbjct: 224 SLHSAINEKRDEIIPINRRYPLEDLHAVLQEYQRQTKR-RITFEYILINNFNVSEGDANA 282

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILA 360
           L   +      +NLIP NP  G E      K I  F   ++     +  IR  +G DI  
Sbjct: 283 LADFVHDFDHVVNLIPCNPVEGTEMTRPSDKKIERFVNFLQNVRKVNVTIRREKGTDIDG 342

Query: 361 ACGQLKSLSKRIPK 374
           ACGQL+  +K+  K
Sbjct: 343 ACGQLRQKNKKPTK 356


>gi|271963404|ref|YP_003337600.1| radical SAM protein [Streptosporangium roseum DSM 43021]
 gi|270506579|gb|ACZ84857.1| radical SAM protein [Streptosporangium roseum DSM 43021]
          Length = 374

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 177/367 (48%), Gaps = 23/367 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E    + ++G        R  Q+ +  + +   D + M+D+    R     
Sbjct: 27  RHLADLTMAERRAVVAELG----EKPFRADQLSRHYFEKLNGDPELMTDLPATAREKFAA 82

Query: 67  HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                    V E  +  GT RK L R     +     +E+V +    R T+CVSSQ GC 
Sbjct: 83  ALFPKLLTSVREMTTDAGTTRKTLWRLFDGAL-----VESVLMRYTDRTTMCVSSQAGCG 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RN+T  EI+ QV+          G   +    +P    ++SN+V M
Sbjct: 138 MNCPFCATGQAGLTRNMTTAEIVEQVVA---------GARALAAGEVPGGPGRVSNVVFM 188

Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N+  V  ++         GL  S R +T+ST G VP I ++  E + V LA+S
Sbjct: 189 GMGEPLANYKAVIGAVRRMVEPSPDGLGISARGVTVSTVGLVPAIGKLAAEGLPVTLALS 248

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVPIN ++ +  ++DA  +Y   +  RR++ EY ++K IND    A  L
Sbjct: 249 LHAPDDELRDTLVPINTRWKVAEVLDAAWNYAA-TTKRRVSIEYALIKDINDQEWRADLL 307

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K++K     +NLIP NP PG ++  S  +D   F   ++  G    +R  RG +I  AC
Sbjct: 308 GKLIKNKLVHVNLIPLNPTPGSKWTASRPEDERAFVRRLEFHGVPVTVRDTRGREIDGAC 367

Query: 363 GQLKSLS 369
           GQL +  
Sbjct: 368 GQLAAAE 374


>gi|186684082|ref|YP_001867278.1| ribosomal RNA large subunit methyltransferase N [Nostoc punctiforme
           PCC 73102]
 gi|205829792|sp|B2J6D0|RLMN_NOSP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|186466534|gb|ACC82335.1| radical SAM enzyme, Cfr family [Nostoc punctiforme PCC 73102]
          Length = 364

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 190/370 (51%), Gaps = 39/370 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+G    EL   + + G P      R  Q+ +WIY +G+R    +S  S++ R  + +
Sbjct: 22  PPLLGASVAELSAWVQQQGQPA----YRGKQLHEWIYDKGVRSLADISVFSKQWRAEVAE 77

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--------KSRGTLCV 118
              I    +    ++ DGT K+LLR     I     IETV IP         K+R T+CV
Sbjct: 78  I-PIGRSTLHYRSVAPDGTVKYLLRLTDGQI-----IETVGIPTFAERGEGPKARLTVCV 131

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           S+QVGC + C FC TG     RNL   EI+ QVL  +                     ++
Sbjct: 132 STQVGCPMACDFCATGKGGYKRNLARHEIIDQVLTVQE-----------------DFQQR 174

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           +SN+V MG+GEPL N +NV  +L   +    +   +R +T+ST G    I +  +  + +
Sbjct: 175 VSNVVFMGLGEPLLNTENVLAALKSLNQD--IGIGQRSLTVSTVGIRDRIRQFAQNNLQI 232

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA +  LR  L+P  R YPLE L+  CR Y  ++   R+TFEYV+L G+ND P 
Sbjct: 233 TLAVSLHAPNQALREKLIPSARAYPLEELLAECREYVEITGR-RVTFEYVLLAGVNDLPE 291

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            AL L K ++G  + +NLIP+NP    +Y   ++  I  F   +K+   +  +R  RGL+
Sbjct: 292 HALELSKCMRGFQSHVNLIPYNPIQEVDYKRPNRDRIEAFVNVLKQQNTAVSVRYSRGLE 351

Query: 358 ILAACGQLKS 367
             AACGQL++
Sbjct: 352 ADAACGQLRA 361


>gi|282857182|ref|ZP_06266426.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455]
 gi|282584968|gb|EFB90292.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455]
          Length = 365

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 185/365 (50%), Gaps = 27/365 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +   M   + E  + +        R    Q+ +WIY + + DF+ M+++S+ +R  L 
Sbjct: 25  KRNAFEMTLADWERFVQE---ELDMPRYTADQLCQWIYKKKVFDFRAMTNLSKALRERLP 81

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   I  P++   + + DGTRK+L R           +E+V +   +  T C+SSQVGC 
Sbjct: 82  ELLEIRLPKLAKRQTAADGTRKYLWRL-----DDGEYVESVLMDHGNHYTACISSQVGCP 136

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC TG Q   RNL+A EI+       S                  VG  I+N+V M
Sbjct: 137 LRCEFCATGQQGFKRNLSAGEIVSHFAAMES-----------------DVGHDINNVVFM 179

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N++NV K++ +  +      S R +T+STSG    I R+ +E + + L +SLH
Sbjct: 180 GMGEPLLNYENVVKAVRMFLEPKMRGLSVRHVTISTSGIPEGIRRLADEGLDIYLCLSLH 239

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N+LR+ ++P+N ++PL  +  A   Y       R+T EYVMLK +ND+P  A  L  
Sbjct: 240 APNNELRSRIMPVNERFPLGAVFSAL-EYWQKKTGVRLTIEYVMLKNVNDTPDCAYELAT 298

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +   +   +NLIP+NP  G ++       I  F + +K       +R   G DI AACGQ
Sbjct: 299 LFSNLQVYVNLIPYNPVAGTQFARPSASRIAPFMKILKGLNVECEVRKEHGADIDAACGQ 358

Query: 365 LKSLS 369
           L+  +
Sbjct: 359 LRGKT 363


>gi|126663212|ref|ZP_01734210.1| hypothetical protein FBBAL38_07660 [Flavobacteria bacterium BAL38]
 gi|126624870|gb|EAZ95560.1| hypothetical protein FBBAL38_07660 [Flavobacteria bacterium BAL38]
          Length = 346

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 198/368 (53%), Gaps = 24/368 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            ++K+ +  + +E+L    +  G        R +Q+++W++ +    F+ M+++S+E R 
Sbjct: 2   QIEKKDIRALTKEQLRTFFVSNGDKA----FRGNQVYEWLWSKRAHTFEDMTNVSKETRA 57

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +L  +F I + ++   + S DGT K  +R     I     +E+V IP ++R T CVSSQV
Sbjct: 58  MLQANFVINHIKVDTLQRSEDGTVKNAVRLHDDLI-----VESVLIPTETRTTACVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GCSL C+FC T   K +RNL   EI  QV               I+        R +SNI
Sbjct: 113 GCSLDCNFCATARLKRMRNLEPGEIYDQV-------------AAIDNESRLYYDRPLSNI 159

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N+ NV K++ + + S GL  S +RIT+STSG    I ++ + E+   LA+
Sbjct: 160 VFMGMGEPLMNYPNVMKAIDMITSSEGLGMSPKRITVSTSGVSKMIKKMADDEVKFKLAV 219

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+   ++RN ++P  + +PL  L +A   Y       ++T+EYV+ KGIND  +    
Sbjct: 220 SLHSAIEEIRNEIMPFTKSFPLTELREAL-EYWYRKTKSKVTYEYVVWKGINDDKKSIDA 278

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+K  K +P K+NLI +NP     +  + +     +   + +S   + +R  RG DI AA
Sbjct: 279 LVKFCKYVPCKVNLIEYNPIDDGMFQQASEDATNAYITALAKSNIVAKVRRSRGKDIDAA 338

Query: 362 CGQLKSLS 369
           CGQL + S
Sbjct: 339 CGQLANKS 346


>gi|29829163|ref|NP_823797.1| hypothetical protein SAV_2621 [Streptomyces avermitilis MA-4680]
 gi|81719951|sp|Q82JY3|RLMN_STRAW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|29606269|dbj|BAC70332.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 368

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 180/368 (48%), Gaps = 23/368 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA+  IG        R  Q+ +  + R   D +  +DI    R  L +
Sbjct: 20  RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGSRAKLQE 75

Query: 67  HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                   +V       D TRK L R     +     +E+V +    R T+C+SSQ GC 
Sbjct: 76  ALLPDLMTVVRHLSTDQDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGCG 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EI+ Q++          G   +    IP    ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTGEIVHQIV---------DGMRALRDGEIPGGPARLSNIVFM 181

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N+  V  ++   +D    GL  S+R IT+ST G VP I R  +E     LAIS
Sbjct: 182 GMGEPLANYKRVVGAIRALTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAIS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVP+N ++ +  ++DA   Y   S   R++ EY +++ IND       L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAGWEYAARSGR-RLSIEYALIRDINDQAWRGDRL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LKG P  +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  AC
Sbjct: 301 GRMLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGAC 360

Query: 363 GQLKSLSK 370
           GQL +  +
Sbjct: 361 GQLAATER 368


>gi|300776949|ref|ZP_07086807.1| cfr family radical SAM enzyme [Chryseobacterium gleum ATCC 35910]
 gi|300502459|gb|EFK33599.1| cfr family radical SAM enzyme [Chryseobacterium gleum ATCC 35910]
          Length = 344

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 119/364 (32%), Positives = 198/364 (54%), Gaps = 24/364 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + +  +  ++L++  + +G        R  Q++ W++ + +     M+++S+ +R  +++
Sbjct: 2   KDIRTLSLDQLKDYFVSLG----EKPFRAKQVYDWLWSKNLHSIDEMTNLSKSLREKISE 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            ++I    +   + S DGT K  ++     +     +E+V IP ++R T CVSSQVGCSL
Sbjct: 58  EYTINPVSVDLLQKSSDGTIKNGVKLHDGLM-----VESVLIPTETRTTACVSSQVGCSL 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC T   K +RNL   EI+ QV L             I+        R +SNIV MG
Sbjct: 113 NCEFCATARLKRMRNLEVAEIVDQVAL-------------IDSQSRMYFDRPLSNIVFMG 159

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
           MGEP+ N+ NV +++   +   GL  S RRIT+STSG    I  + + E+ V LA+SLH+
Sbjct: 160 MGEPMMNYKNVVEAIKKITQPEGLGMSPRRITVSTSGIPKMIKMLADDELRVKLALSLHS 219

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                RN ++P + K+PL  +++A +++   + +  ITFEY + KGIND   D   LIK 
Sbjct: 220 AIESKRNEIMPFSDKFPLTDIMEALQYWYQKTGSV-ITFEYCVWKGINDGDEDIKALIKY 278

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            K +P+K+NLI +NP    +Y   +++    +   ++ +G +  +R  RG DI AACGQL
Sbjct: 279 CKQVPSKVNLIQYNPIGDGKYDQCNKQAEENYIRQLENAGITVMVRRSRGGDIDAACGQL 338

Query: 366 KSLS 369
            + +
Sbjct: 339 ANKT 342


>gi|297621155|ref|YP_003709292.1| Radical SAM superfamily protein [Waddlia chondrophila WSU 86-1044]
 gi|297376456|gb|ADI38286.1| Radical SAM superfamily protein [Waddlia chondrophila WSU 86-1044]
          Length = 362

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/379 (38%), Positives = 209/379 (55%), Gaps = 30/379 (7%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
             + REE ++     G+P    R  +SQI +WIY +G+ D    S++S + R  L   F 
Sbjct: 5   FDLSREEWQKWAETNGLP----RFVSSQILQWIYEKGVVDPAQFSNLSLKARKFLASQFK 60

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
              P I    +S D + K+LLR     +      E V +P +SR TLC+SSQVGC + C+
Sbjct: 61  WELPAIHSHLVSVDQSEKFLLRTSDHQL-----FEMVLMPYESRITLCISSQVGCRIGCT 115

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG   L RNLT+ EIL Q+LLA   +                 G+KI+NIV MGMGE
Sbjct: 116 FCQTGKLGLQRNLTSGEILSQILLANQSMN----------------GKKITNIVFMGMGE 159

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249
           PL N+D V K+  +  D   +  S  R+T+STSG VP I ++G+++ V LAISLH   ++
Sbjct: 160 PLDNYDEVLKACRLMVDPKAIGLSMHRVTVSTSGLVPYIEKLGQDLPVRLAISLHQADDE 219

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R+ ++P+NR+YPL  L  A + YP       ITFEYVM++G ND   DA  L+K + G+
Sbjct: 220 KRSRMMPVNRRYPLSELKKALQQYPA-PKRYGITFEYVMIEGENDRIEDAKKLVKFVSGL 278

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
            AK+NLIP N +PG E   S    + +F   +      +P+R  RG DI   CGQL + +
Sbjct: 279 KAKVNLIPINHFPGLEMKASAADRLKSFQSYLAERSIPAPVRYSRGQDISGGCGQLAAKT 338

Query: 370 KRI----PKVPRQEMQITG 384
           +      P+V R++ + + 
Sbjct: 339 QEELNMDPRVLRRQRKQSA 357


>gi|22299968|ref|NP_683215.1| hypothetical protein tll2425 [Thermosynechococcus elongatus BP-1]
 gi|81742271|sp|Q8DG98|RLMN_THEEB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|22296153|dbj|BAC09977.1| tll2425 [Thermosynechococcus elongatus BP-1]
          Length = 337

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/362 (35%), Positives = 183/362 (50%), Gaps = 31/362 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    EL+  +   G P      R  Q+ +W+Y +G R  Q ++   ++ R  L    
Sbjct: 3   LLGRSAAELKAWVEAQGQPG----YRGQQLHQWLYRKGARSLQEITVFPKQWRAALAD-V 57

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I   EI     + DGT K LL      +     IETV IP   R T+CVSSQVGC + C
Sbjct: 58  EIGRSEIRYRHDAQDGTVKLLL-----ALADGETIETVGIPSSDRLTVCVSSQVGCPMAC 112

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG     RNL   EIL QVL  +S +G                 R++S++V MGMG
Sbjct: 113 DFCATGKGGYRRNLACHEILDQVLTIQSEMG-----------------RRVSHVVFMGMG 155

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVS 247
           EPL N   V ++++  +    +   +R IT+ST G    I R+   ++   LA+SLHA +
Sbjct: 156 EPLLNLPAVLQAITCLNRD--IGIGQRHITISTVGIPQQIQRLAQHQLQTTLAVSLHAPN 213

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P  + YPL  LI  CR Y   +   RITFEY +L G+ND P+ A  L ++L+
Sbjct: 214 QALREQLIPSAKHYPLSQLIADCRAYVQQTGR-RITFEYTVLAGVNDRPQHAEELAQLLR 272

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  + +NLIP+NP     Y     + +  F   ++  G ++ IR  RGLD  AACGQL+ 
Sbjct: 273 GFQSHVNLIPYNPIAEAAYQRPTDQHLRQFLSQLQALGVTASIRRSRGLDRQAACGQLRQ 332

Query: 368 LS 369
             
Sbjct: 333 AQ 334


>gi|124515329|gb|EAY56839.1| putative radical SAM family protein [Leptospirillum rubarum]
          Length = 379

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 142/351 (40%), Positives = 202/351 (57%), Gaps = 7/351 (1%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           L E    +   +     R  Q+ +WI+ + + +++ M ++  + R   +  + +  P + 
Sbjct: 12  LSEWPSLLSGDRTVPAYRARQVAQWIFRQNVSEWERMKNLPGDDRRRWSDRWDLSLPIVR 71

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
           DEK S DGTRK LL        G   IE+V IP   R TLCVSSQVGC + C FC T   
Sbjct: 72  DEKRSRDGTRKLLLELS-----GGALIESVLIPRDDRATLCVSSQVGCGIGCRFCRTAEM 126

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
            LVRNL+  EIL QV +A  LL + P  +  +         +++++V MGMGEPL NFD+
Sbjct: 127 GLVRNLSVSEILGQVRVANRLLAEAPVRDMSKETDPTPFLSRVNHLVFMGMGEPLANFDH 186

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255
           + +SL++ +   G   S RRIT+STSG    I  +G   I V LA+SL A + +LR  L+
Sbjct: 187 LVRSLAVLTSPEGFGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEELRENLM 246

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
           PI+R +P+  ++ ACR YP L N +RITFEYV+L G+ND    A  L ++L    +K+NL
Sbjct: 247 PISRHHPIRSILSACRAYP-LRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRSKVNL 305

Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           IPFNP+PG  Y   D+  +  F E +   G ++ +RT RG DIL ACGQL 
Sbjct: 306 IPFNPYPGSPYHRPDKDRVRRFQEILLAKGVTATLRTTRGEDILGACGQLA 356


>gi|160892219|ref|ZP_02073222.1| hypothetical protein BACUNI_04683 [Bacteroides uniformis ATCC 8492]
 gi|156858697|gb|EDO52128.1| hypothetical protein BACUNI_04683 [Bacteroides uniformis ATCC 8492]
          Length = 350

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 131/375 (34%), Positives = 197/375 (52%), Gaps = 29/375 (7%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N ++K  L+G+   EL+  +  +G+P         QI  W+Y + +     MS++S + R
Sbjct: 3   NDMQKRPLLGLTLAELQNVVKNLGMPG----FSAKQIASWLYDKKVASIDEMSNLSLKHR 58

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            LL + + +     VD   S DGT K+L R      G    +E VYIP++ R TLCVSSQ
Sbjct: 59  ELLKEIYEVGAEAPVDAMRSVDGTVKYLYR-----AGEGHFVEAVYIPDEDRATLCVSSQ 113

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC TG Q    NLT+ +I+ Q+                          K++N
Sbjct: 114 VGCKMNCKFCMTGKQGFTANLTSNQIINQI-------------------SSLPERDKLTN 154

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +VMMGMGEPL N D V K+L I + S G ++S +R+TLS+ G    + R   E    LAI
Sbjct: 155 VVMMGMGEPLDNLDEVLKALEIMTASYGYAWSPKRVTLSSVGLKKGLQRFIGESDCHLAI 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+     R  L+P  + + +  +++  R+Y   S  RR++FEY++ KG+NDS   A  
Sbjct: 215 SLHSPIPLQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLPYAKE 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+K+L+G+  +INLI F+  PG     +D + +  F + +   G  + IR+ RG DI AA
Sbjct: 274 LLKLLRGLDCRINLIRFHAIPGVNLEGADMETMTAFRDYLTSHGLFTTIRSSRGEDIFAA 333

Query: 362 CGQLKSLSKRIPKVP 376
           CG L +  +   K  
Sbjct: 334 CGMLSTAKQEENKEE 348


>gi|217077834|ref|YP_002335552.1| radical SAM enzyme, Cfr family [Thermosipho africanus TCF52B]
 gi|217037689|gb|ACJ76211.1| radical SAM enzyme, Cfr family [Thermosipho africanus TCF52B]
          Length = 341

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/368 (35%), Positives = 203/368 (55%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++++    EEL      +G+     + R  Q++ WIY + + DF+ M+++S+E R +L+
Sbjct: 2   KKNILDFNYEELVNEFKSLGLE----KYRVDQVFDWIYKKKVFDFKDMTNLSKEHRRILD 57

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++F I  P+++D +IS  D T K+L   P         IE+V +  + R T C+S+QVGC
Sbjct: 58  ENFGIQIPKLLDMQISKIDRTTKFLWELPD-----GNTIESVALFHEGRVTACISTQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + CSFC TG    VRNLTA EI+ Q+L                         ++ N+V 
Sbjct: 113 PVKCSFCATGQSGYVRNLTAGEIVSQILGIEVHRK-----------------IRVGNVVY 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N++N  KS+ + ++        RRIT+ST G    I  + E  + V LA+SL
Sbjct: 156 MGMGEPLLNYENTIKSVKMLNNKKMFGIGIRRITISTVGVPEKIIDLAESGLDVKLALSL 215

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N  R+ ++P+N++Y +E LI A + Y  ++N  R+T EY+++K  ND P DA  L 
Sbjct: 216 HATTNFKRDQIIPLNKQYSIEELIFAVKKYQEITN-NRVTIEYILIKEFNDYPEDAEKLA 274

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG+   +NLIP NP     Y    +  +  F E + + G    IR  +G DI AACG
Sbjct: 275 ELLKGLSVYVNLIPVNPV-NPNYYRPSRWAMERFKEILTKYGIECEIRAEKGTDIDAACG 333

Query: 364 QLKSLSKR 371
           QL+  + +
Sbjct: 334 QLRRRNLK 341


>gi|290957076|ref|YP_003488258.1| hypothetical protein SCAB_25951 [Streptomyces scabiei 87.22]
 gi|260646602|emb|CBG69699.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 368

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 181/368 (49%), Gaps = 23/368 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA+  IG        R  Q+ +  + R   D +  +DI    R  L +
Sbjct: 20  RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGARAKLRE 75

Query: 67  HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                   +V       D TRK L R     +     +E+V +    R T+C+SSQ GC 
Sbjct: 76  ALLPELMTVVRHLSTDQDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGCG 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EI+ Q++          G   +    IP    ++SNIV M
Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEIPGGPARLSNIVFM 181

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP I R  +E     LAIS
Sbjct: 182 GMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAIS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVP+N ++ +  ++DA   Y   S   R++ EY +++ IND       L
Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAGWEYTARSGR-RLSIEYALIRDINDQAWRGDRL 300

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LKG P  +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  AC
Sbjct: 301 GRLLKGKPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAGHGVPVTVRDTRGQEIDGAC 360

Query: 363 GQLKSLSK 370
           GQL +  +
Sbjct: 361 GQLAATER 368


>gi|238063328|ref|ZP_04608037.1| radical SAM domain-containing protein [Micromonospora sp. ATCC
           39149]
 gi|237885139|gb|EEP73967.1| radical SAM domain-containing protein [Micromonospora sp. ATCC
           39149]
          Length = 363

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 119/379 (31%), Positives = 185/379 (48%), Gaps = 23/379 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +    L  +     +  + ++G P      R  Q+    + R +RD   M+D+   +R  
Sbjct: 1   MPPRHLADLDLPARQALVTELGEPA----FRAKQMSTHYFGRLVRDPASMTDLPAAIRDR 56

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L           V E    DG TRK L R     +     +E+V +    R T+C+SSQ 
Sbjct: 57  LAGELLPTLLTPVRELACDDGATRKALWRLHDGSL-----VESVLMGYPDRVTVCISSQA 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ Q +                   +     ++S++
Sbjct: 112 GCGMACPFCATGQAGLTRNLSTAEIVDQAVYL---------AGVAASGAVAGSPPRLSHV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEPL N+  V  ++         GL  S+R IT+ST G VP I R+  E++ V L
Sbjct: 163 VFMGMGEPLANYSRVVAAIRRLVAPVPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTL 222

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ LVP+N+++ +  ++DA   Y   +   R++ EY M+K +ND P  A
Sbjct: 223 ALSLHAPDDELRDELVPVNQRWKVAEVLDAAWDYAARTGR-RVSIEYAMIKNVNDQPWRA 281

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++L G    +NLIP NP PG  +  S +     F   ++ +G S+ +R  RG +I 
Sbjct: 282 DLLGQLLAGRLTHVNLIPLNPTPGSRWDASPKPVEREFVRRLRAAGVSTTVRDTRGREID 341

Query: 360 AACGQLKSLSKRIPKVPRQ 378
            ACGQL +   R  + P++
Sbjct: 342 GACGQLAAAGDRDTETPQE 360


>gi|88803607|ref|ZP_01119132.1| radical SAM enzyme, Cfr family protein [Polaribacter irgensii 23-P]
 gi|88780619|gb|EAR11799.1| radical SAM enzyme, Cfr family protein [Polaribacter irgensii 23-P]
          Length = 345

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/366 (34%), Positives = 198/366 (54%), Gaps = 24/366 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK+ +  + +EEL    ++          R +Q+++W++ + +  F  M++IS+E R +L
Sbjct: 3   KKKDIRALTKEELRFFFVEN----NDQAFRGNQVYEWLWSKSLHTFDAMTNISKETREML 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F I + ++   + S DGT K  ++     I     +E+V IP + R T CVSSQVGC
Sbjct: 59  AANFVINHIKVDSMQKSKDGTIKNGIKLHDGLI-----VESVLIPTEKRTTACVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C FC T   K +RNL  +EI  QV++             I+       G K+SNIV 
Sbjct: 114 SLDCKFCATSRLKRMRNLNPDEIYDQVVV-------------IDKQSQLYFGHKLSNIVF 160

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
           MGMGEPL N+ N+ KS+ + +   GL  S +RIT+STSG    I ++  EE+   LA+SL
Sbjct: 161 MGMGEPLMNYKNMMKSIQMITSPEGLGMSSKRITVSTSGVPKMIKKMADEEVKFNLAVSL 220

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  +++R  ++P N  +PL+ L ++  ++   +    IT+EY++  GIND   D   L+
Sbjct: 221 HSAIDEVRTSIMPFNATFPLKDLKESLEYWYEKTGR-AITYEYIVWDGINDRKEDIKALV 279

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
              K IP K+NLI +NP    E+  +    I  +   ++    +  +R  RG DI AACG
Sbjct: 280 AFCKAIPCKVNLIEYNPIDDGEFQQASSAAINNYISNLEMHDITVNVRRSRGKDIDAACG 339

Query: 364 QLKSLS 369
           QL + S
Sbjct: 340 QLANKS 345


>gi|116787825|gb|ABK24655.1| unknown [Picea sitchensis]
          Length = 464

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/383 (40%), Positives = 212/383 (55%), Gaps = 28/383 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVRHL 63
           K  + GM   ELE  +  +        M    +WK +Y  G   +    M  +S++ R  
Sbjct: 102 KTLVKGMTYHELEAWVQSLSYRAGQAMM----LWKCLYGNGMWAQHVDEMQALSKQFRAT 157

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122
           L +        + D   + DGTRK L        G  + IETV IP E+ R TLCVSSQV
Sbjct: 158 LEKTAEFSVFSLKDVYSASDGTRKILFSL-----GDGLIIETVLIPCERGRTTLCVSSQV 212

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C FCYTG   L RNLTA EI+ QV+ AR    +  G               I+N+
Sbjct: 213 GCAMNCQFCYTGRMGLKRNLTAAEIVEQVVYARRHFTNEVG--------------PITNV 258

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL NFDNV K+  I  D  GL FS R++T+STSG VP I R   E   +LA+S
Sbjct: 259 VFMGMGEPLHNFDNVLKAAEIMVDCHGLHFSPRKVTVSTSGLVPQIRRFIRESPCVLAVS 318

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+A ++++RN ++PINRKY L+ML+   R   G  +  ++ FEYVML GINDS  DA  L
Sbjct: 319 LNATTDEVRNWIMPINRKYNLDMLLTMLREEIGQRHKFKVLFEYVMLLGINDSLDDARRL 378

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           + +++GIP KINLI FNP  G  ++ S Q+ ++ F + +  +GY++ IR  RG D +AAC
Sbjct: 379 VNLVEGIPCKINLISFNPHEGSSFIPSTQEQMLAFHKIVADAGYATFIRHSRGNDQMAAC 438

Query: 363 GQLK--SLSKRIPKVPRQEMQIT 383
           GQL     S+       +  Q T
Sbjct: 439 GQLGKPGNSQPPRMRAPERFQAT 461


>gi|310778596|ref|YP_003966929.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM
           2926]
 gi|309747919|gb|ADO82581.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM
           2926]
          Length = 349

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 140/360 (38%), Positives = 201/360 (55%), Gaps = 26/360 (7%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +ELE+ ++ IG+     +    QI+ W++ + IR+   M++IS++ R LL     I +  
Sbjct: 13  KELEDFIVSIGM----KKFNGKQIFDWLHGKIIRNIDDMTNISKKNRELLQSKSYIPFLN 68

Query: 75  IVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           +V  K S  D T K++ +           IETV +  K R TLC+SSQVGC + CSFC T
Sbjct: 69  VVKHKTSKIDYTEKFVFKLED-----GNTIETVLLKHKERNTLCISSQVGCPVKCSFCAT 123

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G    VRNL   EIL QV   +                  S G+ I+N+V MGMGEP+ N
Sbjct: 124 GLDGFVRNLNVHEILNQVYTVQRRF-------------FKSEGKNITNVVFMGMGEPMLN 170

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            +NV K++ I SD  G++ SKRRIT+STSG +P I ++ +E I V LAISLHA++N+ R+
Sbjct: 171 IENVIKAVDILSDENGMNISKRRITISTSGIIPGIEKLLQEKIPVELAISLHAITNEKRD 230

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            L+PINRKYPLE L      Y  ++   RITFEYV++  +N +  DA  L + +      
Sbjct: 231 ALIPINRKYPLEDLYTILNEYQKITKR-RITFEYVLIDKLNVTQSDADRLAEFMHSFDHV 289

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSEC-IKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           +NLIP+NP PG +Y     + I  F    +     +  +R  +G DI  ACGQL+   K+
Sbjct: 290 LNLIPYNPVPGNDYERPAPEKIKKFYNYLLNERKVNVTLRHEKGSDIDGACGQLRQSIKK 349


>gi|298529502|ref|ZP_07016905.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510938|gb|EFI34841.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 332

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 143/353 (40%), Positives = 198/353 (56%), Gaps = 21/353 (5%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           ++  L + G P      R  Q+W+WI+ +   DFQ M++IS+ +R  L Q F +  P +V
Sbjct: 1   MQNLLKERGEPA----YRADQLWQWIWQKKAGDFQEMTNISKALRSSLQQEFVLQRPAVV 56

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
            +K S DGT K LL            IETV IPEK   T C+S+QVGC + C FC TG  
Sbjct: 57  QKKESIDGTVKLLLGLNDGFF-----IETVIIPEKDYYTQCISTQVGCPMGCVFCSTGCM 111

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
              RNLT  EI  QVL+A   L D                 +++N+V+MGMGEPL N+D 
Sbjct: 112 GFKRNLTPGEIASQVLVACRHLEDTGLDST-----------RLTNVVLMGMGEPLLNWDA 160

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256
           VKK++ + +DS+GL  S+RR+TLST G    +   G     MLA+SLHA   DLR  L+P
Sbjct: 161 VKKAMYMMTDSLGLGISRRRLTLSTVGVRDRLQEFGSSRLGMLAVSLHAPDQDLRRRLMP 220

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
               + ++ L+ A   YP L+   RIT EYV+LK INDSP  A  L+++L  +  K+NL+
Sbjct: 221 GAATWDIKDLVRALEQYP-LAPRERITIEYVLLKDINDSPAQARALVRLLSRVKCKVNLL 279

Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
            +NP     Y    +K I+TF E ++  G +  +R  +G DI AACGQL + S
Sbjct: 280 AYNPGEQEGYQPPQEKTILTFEEVLRSKGLTVTLRKSKGQDISAACGQLIADS 332


>gi|330466309|ref|YP_004404052.1| ribosomal RNA large subunit methyltransferase N [Verrucosispora
           maris AB-18-032]
 gi|328809280|gb|AEB43452.1| ribosomal RNA large subunit methyltransferase N [Verrucosispora
           maris AB-18-032]
          Length = 383

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 119/371 (32%), Positives = 182/371 (49%), Gaps = 23/371 (6%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            +  + L  +     +  +  +G P      R  QI    + R +RD   M+D+    R 
Sbjct: 20  SMPPQHLADLDLAGRKALVTGLGEPA----FRARQISTHYFGRLVRDPAQMTDLPAASRA 75

Query: 63  LLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            L           V E    DG TRK L R     +     +E+V +    R T+C+SSQ
Sbjct: 76  RLADQLLPRLLNPVRELACDDGATRKALWRLHDGAL-----VESVLMGYPDRVTVCISSQ 130

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   L RNL+  EI+ Q +    +              +     ++S+
Sbjct: 131 AGCGMACPFCATGQAGLTRNLSTAEIVDQAVYLAGV---------AASGAVVGSPARLSH 181

Query: 182 IVMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238
           +V MGMGEPL N++ V  ++         GL  S+R IT+ST G VP I R+  E++ V 
Sbjct: 182 VVFMGMGEPLANYNRVVAAIRRLVAPAPEGLGLSQRHITVSTVGLVPAIHRLASEDLSVT 241

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ LVP+N+++ +  ++DA   Y   +   R++ EY M+K +ND P  
Sbjct: 242 LALSLHAPDDELRDELVPVNQRWKVSEVLDAAWAYAARTGR-RVSIEYAMIKDVNDQPWR 300

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L ++L G  A +NLIP NP PG  +  S +     F   ++ +G S+ +R  RG +I
Sbjct: 301 ADLLGRLLAGKLAHVNLIPLNPTPGSRWDASPKPVEREFVRRLRDAGVSTTVRDTRGREI 360

Query: 359 LAACGQLKSLS 369
             ACGQL +  
Sbjct: 361 DGACGQLAAAE 371


>gi|189463574|ref|ZP_03012359.1| hypothetical protein BACCOP_04298 [Bacteroides coprocola DSM 17136]
 gi|189429677|gb|EDU98661.1| hypothetical protein BACCOP_04298 [Bacteroides coprocola DSM 17136]
          Length = 349

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/369 (34%), Positives = 191/369 (51%), Gaps = 29/369 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+G    E++  +  +G+P         QI  W+Y + +     M+++S + R  L 
Sbjct: 5   KIPLLGKTLSEIQGIVHGLGMPG----FTAKQIVAWLYDKKVFSIDDMTNLSLKNRERLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +++ I     + E  S DGT K+L      C      IE+VYIP++ R TLCVSSQVGC 
Sbjct: 61  ENYEIGVTAPIHEMRSVDGTVKYLF-----CTPEGDYIESVYIPDEDRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LT  +IL Q+                          K++NIV M
Sbjct: 116 MNCKFCMTGKQGYTNSLTPTQILNQIYSIPERD-------------------KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEP  N D V +SL I +   G ++S +RIT+ST G    + R  EE    LA+SLH+
Sbjct: 157 GMGEPFDNLDAVLRSLEILTADYGYAWSPKRITVSTVGLRKGLERFLEESDCHLAVSLHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  +ID  R Y   S  RR++FEY++ KG+NDS   A  LIK+
Sbjct: 217 PFPAQRRELMPAEKAFSITEIIDILRRY-DFSKQRRLSFEYIVFKGVNDSMLYAKELIKL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  +INLI F+  P  +   +D + ++ F + + + G  + IR  RG DI AACG L
Sbjct: 276 LRGLDCRINLIRFHAIPNVDLEGTDMESMLAFRDYLTQHGVFATIRASRGEDIFAACGML 335

Query: 366 KSLSKRIPK 374
            +  ++  K
Sbjct: 336 STAKRQAEK 344


>gi|313203965|ref|YP_004042622.1| 23S rRNA m(2)a-2503 methyltransferase [Paludibacter propionicigenes
           WB4]
 gi|312443281|gb|ADQ79637.1| 23S rRNA m(2)A-2503 methyltransferase [Paludibacter propionicigenes
           WB4]
          Length = 345

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/374 (34%), Positives = 201/374 (53%), Gaps = 29/374 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+G   +EL++ + ++G+P         QI +W+Y + +     M++IS + R L
Sbjct: 1   MDKIALVGKNIDELKDIVSELGMPA----FTAKQISEWLYKKRVFSLDEMTNISAKNRAL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L   + +     V    S DGT+K+L R       G   IE+VYIP++ R TLCVSSQVG
Sbjct: 57  LAAKYDVGRSLPVQAVESTDGTKKYLFRTE-----GGHFIESVYIPDEDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q     LT  EIL Q++                          ++N+V
Sbjct: 112 CKMGCMFCMTGKQSFTAQLTTTEILNQIMSI-------------------PEAETLTNLV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEP  N   + +SL I +   G  +S RRIT+S+ G +P +    E     LAISL
Sbjct: 153 FMGMGEPFDNTLAMLRSLEILTADYGYGWSPRRITVSSIGLIPGMKVFLERSNCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  ++ R  L+PI + +P+  ++D  R +   S+ RR++FEY++  G+NDS R A+ L+
Sbjct: 213 HSPFSEERLKLMPIEKSFPIAKVLDEIRKH-DFSHQRRVSFEYILFDGVNDSMRHAVELV 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+GI  ++NLI F+  PG +   S  + +  F + +  +G +S IR  RG DI AACG
Sbjct: 272 KLLRGIDCRVNLIRFHAIPGIDLKSSTPEKMTFFRDYLTSNGVTSTIRRSRGEDIFAACG 331

Query: 364 QLKSLSKRIPKVPR 377
            L +L K   +  +
Sbjct: 332 MLSTLEKEKEEAQQ 345


>gi|320161065|ref|YP_004174289.1| hypothetical protein ANT_16630 [Anaerolinea thermophila UNI-1]
 gi|319994918|dbj|BAJ63689.1| hypothetical protein ANT_16630 [Anaerolinea thermophila UNI-1]
          Length = 357

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 187/374 (50%), Gaps = 26/374 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +   ++  +     E+L+  L+  G P      R  Q+W+ +Y       +  + + + +
Sbjct: 5   ITMSERPLIYDFDLEDLQNILVAWGEPP----FRAKQVWEGLYHSFWNSPEEFTHLPKTL 60

Query: 61  RHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           R+ L + FS  +   +    S DG T K L   P         IETV +  K R TLC+S
Sbjct: 61  RNRLAEEFSFSHLSPIQTYASEDGETSKTLFHLPDNR-----SIETVLMRYKERRTLCIS 115

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +Q GC++ C FC TG     R+L++ EI+ QV+    LL           +         
Sbjct: 116 TQSGCAMGCVFCATGQMGFGRHLSSGEIVEQVIYFARLLRKTNEVVTNVVV--------- 166

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
                MGMGEP  N++N  K+++  +   G +   RR T+ST G VP I R  +E   + 
Sbjct: 167 -----MGMGEPFHNYENTLKAIARLNHPEGFNLGARRFTISTVGLVPMIERFAQENHQIN 221

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLHA ++ LR+ L+P+N+KYP+  L+ A R Y   +   R+TFE+ +++ INDSP  
Sbjct: 222 LAISLHAANDTLRSSLLPVNKKYPISDLMRAVRQYVAQTGR-RVTFEWALIRDINDSPEH 280

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L  +LKG+   +N+IP NP        + ++    F   ++++G  + IR  RG+DI
Sbjct: 281 ARELASLLKGLLCHVNVIPLNPTQKYHGKATTRERAEAFCSILQKAGIPATIRLRRGIDI 340

Query: 359 LAACGQLKSLSKRI 372
            A CGQL +   + 
Sbjct: 341 QAGCGQLATQHTQT 354


>gi|15616897|ref|NP_240110.1| hypothetical protein BU286 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681651|ref|YP_002468037.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|257471340|ref|ZP_05635339.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           LSR1 (Acyrthosiphon pisum)]
 gi|11387286|sp|P57373|RLMN_BUCAI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|25320166|pir||D84963 hypothetical protein [imported] - Buchnera sp. (strain APS)
 gi|10038961|dbj|BAB12996.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219624494|gb|ACL30649.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
          Length = 363

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/364 (43%), Positives = 212/364 (58%), Gaps = 24/364 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K +L+ + R+ L+  L+ +G         T Q+  WIY     DF  M +IS + R  
Sbjct: 12  ISKINLLDLNRQNLKYFLISLG----AKNFCTEQVMSWIYNYYCDDFNKMLNISIKTRKK 67

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +   I   E ++EKIS DGT KW+            +IETVY+PEK R TLCVSSQ+G
Sbjct: 68  LYEKSYIFASEFIEEKISYDGTIKWI------TDINNQKIETVYMPEKKRSTLCVSSQIG 121

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL C FC TG +   RNL   EI+ Q+  A   L +             ++ + I+NIV
Sbjct: 122 CSLKCHFCATGQEGFQRNLKVSEIIAQIWQANKRLKE------------KNIKKNITNIV 169

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N  NV  +L+I  D  G   SKRR+TLSTSG VP + ++   I V LAISL
Sbjct: 170 FMGMGEPLLNLKNVVSALTIILDEYGFGLSKRRVTLSTSGIVPALDKLRNMIDVSLAISL 229

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301
           HA ++ +RNI++PINRKY +  ++ +   Y   SNA R  IT EYVML  INDS  +A  
Sbjct: 230 HAPNDFIRNIIMPINRKYNISSVLSSALKYFKYSNANRGGITIEYVMLDRINDSNENARQ 289

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +L  IP+KINLIP+N + G  +LCS+   I  F+  +++ G+++ IR  RG DI AA
Sbjct: 290 LSVLLSKIPSKINLIPWNSFSGPSFLCSNTDRINMFANILRKKGFTTTIRKNRGEDINAA 349

Query: 362 CGQL 365
           CGQL
Sbjct: 350 CGQL 353


>gi|282876907|ref|ZP_06285759.1| radical SAM enzyme, Cfr family [Prevotella buccalis ATCC 35310]
 gi|281300950|gb|EFA93267.1| radical SAM enzyme, Cfr family [Prevotella buccalis ATCC 35310]
          Length = 343

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 190/370 (51%), Gaps = 30/370 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   KK+ L+GM   EL+E    +G+P         Q+ KW+Y R +     M+DIS+  
Sbjct: 1   METGKKK-LLGMTLSELKEVAQALGMPS----FAGGQMAKWLYQRQVTSIGEMTDISKSN 55

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L + + I     +D + S DGT K+L             +ETV+IP+  R TLCVS 
Sbjct: 56  RERLAEEYEIGCMAHIDAQYSKDGTIKYLF-----PTASGKFVETVFIPDDDRATLCVSC 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC TG Q    NLT  +IL QV                          +++
Sbjct: 111 QVGCKMNCLFCQTGKQGFEGNLTYADILNQVYSLPERD-------------------RLT 151

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIV MG GEP+ N DNV +   + +   G ++S +RIT+S+ G    + R  +E    +A
Sbjct: 152 NIVFMGQGEPMDNLDNVLRVTQVMTADYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVA 211

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLH+   + R++L+P  +  P+E ++D  R Y   ++ RR++FEY++  G+ND+P  A 
Sbjct: 212 ISLHSALPEQRSMLMPAEKGMPIEQIVDLLRGY-DFAHQRRLSFEYIVFGGLNDTPMHAR 270

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            +I +L G+  ++NLI F+  P      +D++ +  F   +   G  + IR  RG DI A
Sbjct: 271 RIIDLLHGLDCRVNLIRFHQIPNVPLKGADEQKMENFRNYLTSHGVFTTIRASRGQDIFA 330

Query: 361 ACGQLKSLSK 370
           ACG L +  K
Sbjct: 331 ACGLLSTAKK 340


>gi|222823067|ref|YP_002574640.1| radical SAM enzyme (Cfr family) [Campylobacter lari RM2100]
 gi|254807160|sp|B9KEA4|RLMN_CAMLR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|222538288|gb|ACM63389.1| conserved hypothetical protein, radical SAM enzyme (Cfr family)
           [Campylobacter lari RM2100]
          Length = 356

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 138/379 (36%), Positives = 205/379 (54%), Gaps = 42/379 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++   +EELE  +          + R  QI++W+Y +   DF  MS + ++ R  L +
Sbjct: 5   KNMLDFTKEELENLV--------QPKFRAKQIFEWVYKKYADDFLQMSSLPKDFRVYLQK 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
           +F     + V ++ S DG+ K+L            +IE V +P K              R
Sbjct: 57  NFHFSPLKCVKDEKSKDGSIKYLFELLD-----GKKIEAVLLPMKEELVDENGKIIKHAR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +                  
Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLSRNLSAGEIVGQILWIKKHN--------------K 157

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  NIV MGMGEPL N  NV K++ I +D+  L+ S RR T+STSG    I  +GE
Sbjct: 158 IPYERRVNIVYMGMGEPLDNLKNVSKAVKILADNDALAISPRRQTISTSGLAKQIKELGE 217

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV+++LR+ L+PIN+ Y +  +++A R++P +   +R+ FEY+++ GI
Sbjct: 218 MNLGVLLAISLHAVNDELRSELMPINKAYNIASIMEAVRNFP-IDQRKRVMFEYLLIDGI 276

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR 
Sbjct: 277 NDKIEHAKELVKLLNGIKAKVNLILFNPHEGSLYNRPSVENAIKFQDYLSAKGVTCTIRE 336

Query: 353 PRGLDILAACGQLKSLSKR 371
            +GLDI AACGQLK    +
Sbjct: 337 SKGLDISAACGQLKERQSK 355


>gi|253828191|ref|ZP_04871076.1| Fe-S cluster redox enzyme [Helicobacter canadensis MIT 98-5491]
 gi|253511597|gb|EES90256.1| Fe-S cluster redox enzyme [Helicobacter canadensis MIT 98-5491]
          Length = 346

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 138/368 (37%), Positives = 200/368 (54%), Gaps = 28/368 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+++ G     L ++L          + R  QI+ W+YV    DF+ M ++ + +R  
Sbjct: 1   MDKQNVFGFTLNSLSDSLKDF------PKFRAKQIYHWLYVHYENDFEKMENLPKNLREF 54

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQV 122
           L ++F     EI  ++ S DG+ K+L +            E V++  K  + TLC+SSQV
Sbjct: 55  LKENFISNAVEIAKKEQSSDGSVKYLFKTADNLT-----YEAVFLKMKEDKFTLCLSSQV 109

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + CSFC T     VRNL A E++ QV   +                      K  NI
Sbjct: 110 GCKVGCSFCLTAKGGFVRNLNAGEMVYQVFAIKKDQNI--------------PSNKAVNI 155

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N +NV K + I S+  GLS S+RR T+STSG  P I ++G  ++GV LAI
Sbjct: 156 VYMGMGEPLDNLENVTKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALDLGVQLAI 215

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV ++LR  L+PIN+ Y ++ +ID    +P + + +R+ FEY+M+ GINDS   A  
Sbjct: 216 SLHAVDDELRTKLMPINKAYNIQNIIDEVVAFP-IDSRKRVMFEYLMIDGINDSLECAKK 274

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+ +L  I AK+NLI FNP  G  Y    ++ +  F E + + G    IR  +GLDI AA
Sbjct: 275 LVALLNKIKAKVNLIYFNPHEGSLYKRPSKEKVEAFREYLLKKGLLCTIRESKGLDISAA 334

Query: 362 CGQLKSLS 369
           CGQL+   
Sbjct: 335 CGQLREKE 342


>gi|188585964|ref|YP_001917509.1| radical SAM enzyme, Cfr family [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|205829820|sp|B2A2K6|RLMN_NATTJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|179350651|gb|ACB84921.1| radical SAM enzyme, Cfr family [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 351

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/372 (34%), Positives = 198/372 (53%), Gaps = 31/372 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+SL  +   EL+E   + G  Q     R  QI+ W+Y++ +   + MS+I +++R  L 
Sbjct: 5   KQSLKDLTLNELQEYFSRKGWQQ----FRAKQIFDWMYIQQVDSIEVMSNIPKKLRQELM 60

Query: 66  QHFSIIYPEIVD---EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           ++ +I   E+          DGT K+L       +   + +ET  +      T+C+SSQ 
Sbjct: 61  ENCTINDLELDSNNIYTSPTDGTIKFL-----SVLKDGIGVETTIMKYDYGNTVCISSQA 115

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C FC + T    R+L+  E++ QVL+A  +L                    I+NI
Sbjct: 116 GCNMNCVFCASTTGGKERDLSPGEMIDQVLMANKVL---------------PGSESINNI 160

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V+MG GEPL N+ ++ K L I +D  GL+   R IT+ST G VP I  + EE + + LAI
Sbjct: 161 VVMGSGEPLENYQHLIKFLKIVNDGKGLNIGMRHITVSTCGLVPEIYNLAEEELQLNLAI 220

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +++LRN L+P+N+ YP+  L++AC+ Y   +   RITFEYV++K  NDS   A  
Sbjct: 221 SLHAPNDELRNKLIPLNKIYPIHELLEACQVYFQKTGR-RITFEYVLIKDFNDSIDLAKE 279

Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L + L    +P  +NLIPFNP    ++       I  F   ++ +     +R  RG+D+ 
Sbjct: 280 LSETLTALKMPVHVNLIPFNPVEETKFTAPPSSRISDFKNNLQSNNIGVTVRKERGVDVD 339

Query: 360 AACGQLKSLSKR 371
            ACGQL+S   R
Sbjct: 340 GACGQLRSKVMR 351


>gi|72161087|ref|YP_288744.1| ribosomal RNA large subunit methyltransferase N [Thermobifida fusca
           YX]
 gi|123760876|sp|Q47S46|RLMN_THEFY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|71914819|gb|AAZ54721.1| Conserved hypothetical protein 48 [Thermobifida fusca YX]
          Length = 365

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 183/365 (50%), Gaps = 23/365 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +  +E  +A+ ++G        R  Q+ +  + R   D   M+D+    R  L +
Sbjct: 17  RHLADLDPQERRDAVAELG----EKPFRARQLAQHYFGRLEADTARMTDLPAASRERLGE 72

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                    V      +G TRK L R         V +E+V +    R TLCVSSQ GC 
Sbjct: 73  ALLPQLLTPVKHVTCDNGMTRKTLWR-----AFDGVLVESVLMRYPDRVTLCVSSQAGCG 127

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EI+ QV+ +           D+    +     +ISNIV M
Sbjct: 128 MNCPFCATGQAGLTRNLSTAEIVDQVVSSAR---------DLARGTVAGGPGRISNIVFM 178

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242
           GMGEPL N+  V  ++   +D    GL  S+R IT+ST G VP I ++  E + V LA+S
Sbjct: 179 GMGEPLANYKRVLAAIRRITDPVPDGLGISQRGITVSTVGLVPAIEKLTAERMQVRLAVS 238

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVP+N ++ +  ++DA   Y   +  RR++ EY +++ IND    A  L
Sbjct: 239 LHAPDDELRDELVPVNHRWKVAEVLDAAWRYAD-TTGRRVSIEYALIRDINDQAWRADLL 297

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +++ G  A +NLIP NP PG ++  S  +    F   ++  G S  +R  RG +I  AC
Sbjct: 298 GRLVAGRLAHVNLIPLNPTPGSKWTASRPEVEREFVRRLRSHGVSVTVRDTRGREIDGAC 357

Query: 363 GQLKS 367
           GQL +
Sbjct: 358 GQLAA 362


>gi|239982588|ref|ZP_04705112.1| hypothetical protein SalbJ_24361 [Streptomyces albus J1074]
 gi|291454431|ref|ZP_06593821.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291357380|gb|EFE84282.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 370

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 180/369 (48%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA+  IG        R  Q+ +  + R   D    +DI    R  L  
Sbjct: 22  RHLADLTPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAGSREKLRS 77

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   ISCD   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 78  ELLPDLMSVV-RHISCDDDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 131

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV 
Sbjct: 132 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 182

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP I R  +E     LA+
Sbjct: 183 MGMGEPLANYNRVTGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAV 242

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++D+   Y   S   R++ EY +++ IND       
Sbjct: 243 SLHAPDDELRDTLVPVNTRWKVREVLDSAWEYAEKSGR-RVSIEYALIRDINDQAWRGDL 301

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LK     +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  A
Sbjct: 302 LGRLLKNKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIASHGVPVTVRDTRGQEIDGA 361

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 362 CGQLAATER 370


>gi|205829899|sp|A4X4J7|RLMN_SALTO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
          Length = 372

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 116/370 (31%), Positives = 179/370 (48%), Gaps = 23/370 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +    L        +  + ++G P    R R  Q+    + R +RD + M+D+    R  
Sbjct: 20  MPPRHLADFDLAGRQTLVTELGEP----RFRARQVSTHYFGRLVRDPEQMTDLPAATREK 75

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L           V E    DG T K L R     +     +E+V +    R T+C+SSQ 
Sbjct: 76  LADQLLPTLLTPVRELACDDGATHKALWRLHDGSL-----VESVLMGYPDRVTVCLSSQA 130

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ Q +                   +     ++S +
Sbjct: 131 GCGMACPFCATGQAGLTRNLSTAEIVDQAVYL---------AGVAASGAVAGSPPRLSRV 181

Query: 183 VMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEPL N++ V  ++         GL  S+R IT+ST G VP I R+  E++ V L
Sbjct: 182 VFMGMGEPLANYNRVVAAIRRLVAPSPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTL 241

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ LVP+N+++ +  +++A   Y   +   R++ EY M+K +ND P  A
Sbjct: 242 ALSLHAPDDELRDELVPVNQRWKVSEVLEAAWEYAARTGR-RVSIEYAMIKDVNDQPWRA 300

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++L    A +NLIP NP PG  +  S +     F   ++ +G S+ +R  RG +I 
Sbjct: 301 DLLGRLLADRLAHVNLIPLNPTPGSRWDASPKPVEREFVRRLRAAGVSTTVRDTRGREID 360

Query: 360 AACGQLKSLS 369
            ACGQL +  
Sbjct: 361 GACGQLAAAE 370


>gi|33865151|ref|NP_896710.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
           WH 8102]
 gi|81575037|sp|Q7U8K0|RLMN_SYNPX RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33638835|emb|CAE07132.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 344

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 179/370 (48%), Gaps = 37/370 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ-H 67
           L+G    ELE   +  G        R  Q+  W+Y +G R    ++ + +  R  L +  
Sbjct: 2   LLGRSAAELESWAVAQG----QKPFRGRQLHDWLYAKGARSLSEITVLPKAWRESLKEDG 57

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             +   + V   ++ D T K LL            IETV IP   R T+CVSSQVGC + 
Sbjct: 58  VEVGRLKEVHRSVAADATTKLLL-----STDDGETIETVGIPTDQRLTVCVSSQVGCPMA 112

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG   L R+L   EI+ QVL  R ++                  R+ S+IV MGM
Sbjct: 113 CRFCATGKGGLQRSLRTHEIVDQVLSVREVM-----------------DRRPSHIVFMGM 155

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240
           GEPL N   V  ++   +D   L   +RRIT+ST G    + ++ E            LA
Sbjct: 156 GEPLLNSQAVLDAIRCLNDD--LGIGQRRITVSTVGVPKTLPQLAELALATLGRAQFTLA 213

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +  LR  L+P    YP E L++ CRHY  ++   R++FEY++L G+ND+P  A 
Sbjct: 214 VSLHAPNQALREELIPTAHAYPYEALLEDCRHYLAVTGR-RVSFEYILLGGLNDAPEHAA 272

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L   + G  + +NLI +NP    E+    +  I  F   ++R G +  +R  RGLD  A
Sbjct: 273 ELADRVGGFQSHVNLIAYNPIEEEEFQRPTRARIEGFQRVLERRGVAVSLRASRGLDQNA 332

Query: 361 ACGQLKSLSK 370
           ACGQL+   +
Sbjct: 333 ACGQLRRRRQ 342


>gi|311748631|ref|ZP_07722416.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1]
 gi|126577157|gb|EAZ81405.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1]
          Length = 352

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 202/371 (54%), Gaps = 24/371 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  ++K  +  +  EELEE  L  G      + R  Q++ W++ + +++F  MS+IS E 
Sbjct: 1   MEEIQKSDVRKLSLEELEEFFLAHG----EKKFRAKQVYDWLWNKSLKNFDDMSNISLET 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R LL ++F I +  +   + S DGT K  ++     I     +E+V IP   R T CVSS
Sbjct: 57  RELLKKYFKINHILVDLMQHSSDGTIKNAVKLYDDKI-----VESVLIPTSKRITACVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGCSL C+FC T   K +RNL  +EI  QV+  +                     R ++
Sbjct: 112 QVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIKE-------------EAEKYFERPLT 158

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           NIV MGMGEPL N+ NV  ++   +   GL  + RRITLST G    I ++ + E+   L
Sbjct: 159 NIVFMGMGEPLLNYANVLAAIDKITSPEGLGMAARRITLSTVGVTKMIRKMADDEVKFNL 218

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+  N+ R+ L+PIN   P+E L ++ +++   +   ++T+EYV+  G+ND  R A
Sbjct: 219 AVSLHSAINETRSRLMPINDSNPVEELGESLKYWYKKTGR-KVTYEYVIWDGVNDDERHA 277

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L K  K IP+K+N+I +NP    E+  + Q+ +  +   ++  G  + +R  RG DI 
Sbjct: 278 RALAKFCKLIPSKVNIIQYNPIDEGEFRQAKQEAVDMYIRVLESQGVIAKVRKSRGQDID 337

Query: 360 AACGQLKSLSK 370
           AACGQL + ++
Sbjct: 338 AACGQLANKNE 348


>gi|289422335|ref|ZP_06424185.1| radical SAM enzyme, Cfr family [Peptostreptococcus anaerobius
           653-L]
 gi|289157280|gb|EFD05895.1| radical SAM enzyme, Cfr family [Peptostreptococcus anaerobius
           653-L]
          Length = 352

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/380 (35%), Positives = 205/380 (53%), Gaps = 32/380 (8%)

Query: 1   MNFLK--KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
           MN  K  K  L  +  EE+ E +L +G      + R +Q++ W+Y + IRDF  M ++ +
Sbjct: 1   MNEGKIGKVVLKNLTEEEMVEFILSLG----EKKFRAAQVYSWVY-KNIRDFDEMKNVPK 55

Query: 59  EVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
            +R  L +   I   +I  +  S  D T+K+L       I     IETV +   SR T+C
Sbjct: 56  SLRDKLREKSIIGNLDIELKLESKIDNTKKYLFLLNDGNI-----IETVAMDYDSRLTVC 110

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VS+QVGC + C+FC +    L R+L A EIL Q++  +                   +G+
Sbjct: 111 VSNQVGCRMGCNFCASTIGGLSRHLEAWEILDQIMKVQE-----------------DLGK 153

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIG 236
           ++SNIVMMG GEPL NFDN  + L + ++  GL+   R ITLS  G V  I  + + +I 
Sbjct: 154 RVSNIVMMGSGEPLDNFDNSMRFLKLVNEKNGLNIGNRHITLSRCGLVDRILELADMQIP 213

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LAISLH+  ++ R  ++PI +KY ++ L+DACR+Y   +N  R+TFEY ++K  N++ 
Sbjct: 214 INLAISLHSPYDEERKEIMPIAKKYTIKELMDACRYYISKTNR-RVTFEYALIKDKNNTD 272

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
           R+A  L+++L+G+   +NLIP NP    +Y   + + I  F   + ++     IR   G 
Sbjct: 273 REAKKLVELLRGMLCHVNLIPINPIAERDYEKPNIEYINKFKNYLDKNKIPVSIRNSMGS 332

Query: 357 DILAACGQLKSLSKRIPKVP 376
           DI  ACGQL+   K   K  
Sbjct: 333 DISGACGQLRRDYKGTSKEE 352


>gi|206890968|ref|YP_002247985.1| radical SAM enzyme, Cfr family [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742906|gb|ACI21963.1| radical SAM enzyme, Cfr family [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 342

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/365 (42%), Positives = 216/365 (59%), Gaps = 27/365 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K++L  +  +++E+ +L   +P      R+ QI +WIY + +     +++ S+ +R  
Sbjct: 1   MYKQNLKELTTKQIEKIILDESLPL----YRSKQIVQWIYKKFVDSINDITEWSKSLRER 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            ++ + I    + D++IS DGT K+L            +IE+V I +K R TLCVSSQVG
Sbjct: 57  FSEKYYIGRINLFDKRISIDGTIKFLWELED-----GEKIESVLISDKDRLTLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C FC TG   L RNL A EI+ Q +    +              I    RKI+NIV
Sbjct: 112 CMLKCKFCLTGKIGLKRNLKAWEIVDQYIQVSKI--------------IQKENRKITNIV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242
            MGMGEPL NF+NV ++L    D   + FS  RITLST+G +P I  +  +   + LAIS
Sbjct: 158 FMGMGEPLLNFENVVEALWRLKD--LILFSPSRITLSTAGIIPAIKELPYKAPAIKLAIS 215

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+A  N  R+ L+PIN+KYPL  LI   R YP L    RITFEY+++KGIN S +DA  L
Sbjct: 216 LNATDNKTRSYLMPINKKYPLHELIKTLRDYP-LKPRHRITFEYILIKGINCSEKDAYRL 274

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LKGIP+KINLIPFNPW GCE+   +  +I+ F E +   GYS  IR  +G DILAAC
Sbjct: 275 SELLKGIPSKINLIPFNPWEGCEFERPEDNEILNFQEILAARGYSVFIRKSKGTDILAAC 334

Query: 363 GQLKS 367
           GQLK+
Sbjct: 335 GQLKA 339


>gi|289522515|ref|ZP_06439369.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504351|gb|EFD25515.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 343

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/361 (38%), Positives = 201/361 (55%), Gaps = 27/361 (7%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           + +  ++  E L          R R  QI +WIY + I DFQ M+++S+E+R  L     
Sbjct: 8   LELDYDQWTETLTG---KFGLQRYRADQICQWIYQKKIFDFQEMTNLSKELRGKLADAVM 64

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           +  P +  E+ S DGT+K+L +F          +E+V + ++ R T C+S+QVGC L C+
Sbjct: 65  VAPPILTREETSKDGTKKYLWQFHD-----GERVESVLLSQEGRLTACLSTQVGCPLACT 119

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +G    VR+L+  EI+ Q L    L G                 R I N+V MGMGE
Sbjct: 120 FCASGEGGFVRDLSGGEIVGQFLAMEKLAG-----------------RDIDNVVYMGMGE 162

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSN 248
           P  N ++V KS+ I ++        RRIT+ST+G VP I  + E ++ V L++SLHA ++
Sbjct: 163 PFLNQESVFKSIKILNEPKMRGLGIRRITISTAGIVPGILALAEAQMPVKLSVSLHAPND 222

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
            LR+ L+PIN+KYPL  L++A R Y   +N  R+TFEY+ML+G+ND P  A  L  +LKG
Sbjct: 223 RLRSKLMPINKKYPLASLLEALRRYQSATN-DRVTFEYLMLEGVNDLPEYAYELAALLKG 281

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +   INLIP+N   G +Y  S    I  FS  + +      IR  RG DI AACGQLK +
Sbjct: 282 LSFYINLIPYNQVEGSKYKRSSAGRIKAFSNILSQLNIEHEIRRERGSDINAACGQLKRI 341

Query: 369 S 369
           S
Sbjct: 342 S 342


>gi|170288910|ref|YP_001739148.1| radical SAM protein [Thermotoga sp. RQ2]
 gi|205829920|sp|B1LAW7|RLMN_THESQ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|170176413|gb|ACB09465.1| radical SAM enzyme, Cfr family [Thermotoga sp. RQ2]
          Length = 343

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 134/371 (36%), Positives = 205/371 (55%), Gaps = 32/371 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+ +  EEL   +  +G+     R R  QI  W++ + + +F  M+++S++ R LL +
Sbjct: 2   KNLLDLSYEELVAEVTSLGLE----RYRADQILDWVFNKKVNNFDEMTNLSKQHRALLKE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           HFSI + +++D+K+S  DGT K+L             IE+V +    R T C+S+QVGC 
Sbjct: 58  HFSIPFLKLLDKKVSRIDGTTKFLWELED-----GNTIESVMLFHPDRITACISTQVGCP 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG    VRNLT  EI+ Q+L                        +KI N+V M
Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQILSMER-----------------EEKKKIGNVVYM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N++N  KS+ I +     +   RRIT+ST G    I ++ EE + V LA+SLH
Sbjct: 156 GMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N  R+ LVP+N+KY +E +++A + Y   +   R+T EYV+++GIND   DA  L +
Sbjct: 216 APTNFKRDQLVPLNKKYSIEEILNAVKIYQRKT-GNRVTIEYVLIRGINDEISDAKKLAE 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ILK +   +NLIP NP    +     ++ ++ F   +  +G  + IR  +G DI AACGQ
Sbjct: 275 ILKNMKIFVNLIPVNPTAE-DLKKPSRERLLAFKRILLENGIEAEIRREKGSDIEAACGQ 333

Query: 365 LKSLSKRIPKV 375
           L+   KRI   
Sbjct: 334 LR--LKRIKST 342


>gi|32477801|ref|NP_870795.1| Fe-S-oxidoreductase [Rhodopirellula baltica SH 1]
 gi|81658686|sp|Q7UHU7|RLMN_RHOBA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|32448358|emb|CAD77872.1| conserved hypothetical protein-putative Fe-S-oxidoreductase
           [Rhodopirellula baltica SH 1]
          Length = 371

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/373 (35%), Positives = 192/373 (51%), Gaps = 26/373 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  L+    ++L++ L + G        R  QI +W++      F+ M+D+  ++R  L
Sbjct: 24  RKNHLLNWSLDQLKDWLQEQG----QKPFRAKQIRRWLFSGRATSFEEMTDLPAKLRAQL 79

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +HF+I          S DGT K L+R          E+E V + +  R ++CVSSQVGC
Sbjct: 80  EEHFAIFNATEAVVSKSKDGTEKILVRL-----ADGGEVECVLLRDGPRRSICVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC +G   + RNLT  EIL Q+L  +  L                   ++S+IVM
Sbjct: 135 AMGCVFCASGLDGVDRNLTGGEILEQMLRLQQRL---------------PADERLSHIVM 179

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N   V  +L +A    GL  S RRIT+ST G  P I ++    I   LA+SL
Sbjct: 180 MGMGEPLANLPGVLSALDVARSEDGLGISPRRITISTVGLPPAIDKLAAAGIPYNLAVSL 239

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ LVP+NRK  +E ++ A   Y   S   R+TFEYV+L GIND    A  L 
Sbjct: 240 HAPNDELRSELVPVNRKIGIEPVLQAADRYFHASGR-RLTFEYVLLGGINDGDEHARQLS 298

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +IL+G    +N+IP+NP  G  Y       I  F   ++ +G +   R  +G +I AACG
Sbjct: 299 QILRGRSVMMNVIPYNPVAGLPYRTPSGAAIARFRAILESAGVNVNFRQRKGDEINAACG 358

Query: 364 QLKSLSKRIPKVP 376
           QL+     +    
Sbjct: 359 QLRRNRGEVKATK 371


>gi|145593878|ref|YP_001158175.1| radical SAM protein [Salinispora tropica CNB-440]
 gi|145303215|gb|ABP53797.1| radical SAM enzyme, Cfr family [Salinispora tropica CNB-440]
          Length = 353

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 116/370 (31%), Positives = 179/370 (48%), Gaps = 23/370 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +    L        +  + ++G P    R R  Q+    + R +RD + M+D+    R  
Sbjct: 1   MPPRHLADFDLAGRQTLVTELGEP----RFRARQVSTHYFGRLVRDPEQMTDLPAATREK 56

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L           V E    DG T K L R     +     +E+V +    R T+C+SSQ 
Sbjct: 57  LADQLLPTLLTPVRELACDDGATHKALWRLHDGSL-----VESVLMGYPDRVTVCLSSQA 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ Q +                   +     ++S +
Sbjct: 112 GCGMACPFCATGQAGLTRNLSTAEIVDQAVYL---------AGVAASGAVAGSPPRLSRV 162

Query: 183 VMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEPL N++ V  ++         GL  S+R IT+ST G VP I R+  E++ V L
Sbjct: 163 VFMGMGEPLANYNRVVAAIRRLVAPSPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTL 222

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ LVP+N+++ +  +++A   Y   +   R++ EY M+K +ND P  A
Sbjct: 223 ALSLHAPDDELRDELVPVNQRWKVSEVLEAAWEYAARTGR-RVSIEYAMIKDVNDQPWRA 281

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++L    A +NLIP NP PG  +  S +     F   ++ +G S+ +R  RG +I 
Sbjct: 282 DLLGRLLADRLAHVNLIPLNPTPGSRWDASPKPVEREFVRRLRAAGVSTTVRDTRGREID 341

Query: 360 AACGQLKSLS 369
            ACGQL +  
Sbjct: 342 GACGQLAAAE 351


>gi|53712370|ref|YP_098362.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
           fragilis YCH46]
 gi|81383319|sp|Q64XE8|RLMN_BACFR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|52215235|dbj|BAD47828.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 344

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 194/367 (52%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+     +G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MPKYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L   + +     VDE  S DGT K+L +           +E VYIP++ R TLCVSSQVG
Sbjct: 57  LKGEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    +LTA +IL Q+                          K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTASLTANQILNQIAALPEWD-------------------KLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L I + S G  +S +RITLS+ G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R+ L+P  R + ++ ++D  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPFPSQRSELMPAERAFSIKEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLIYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +  + + +F + +   G  + IR  RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGAGMETMTSFRDYLTSHGLFTTIRASRGEDIFAACG 331

Query: 364 QLKSLSK 370
            L +  +
Sbjct: 332 MLSTAKQ 338


>gi|42522317|ref|NP_967697.1| hypothetical protein Bd0733 [Bdellovibrio bacteriovorus HD100]
 gi|81618236|sp|Q6MPV7|RLMN_BDEBA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|39574848|emb|CAE78690.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 399

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/380 (35%), Positives = 212/380 (55%), Gaps = 26/380 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +  +   +  E+L+  +   G  Q     R  QI+KW+Y + + D + M+++S+E R  L
Sbjct: 26  QPVNFYSLTLEDLKAYIKSKGKEQ----FRAQQIFKWVYEQRVTDPEQMTNLSKEFRQDL 81

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
               S   P ++    S DGT+K+L           + +E V IP + R TLC+SS+VGC
Sbjct: 82  PSMLSFDLPPVLQHLKSVDGTQKFLFDMKD-----GMSVEAVVIPSEDRLTLCISSEVGC 136

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC+TG QKL R L  E+I+ Q +     L +               G++I+NIV 
Sbjct: 137 NMACKFCFTGKQKLKRRLRTEDIVGQFMQVHDRLAE---------------GQRITNIVF 181

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N + V K++ +     G++ S+++IT+STSG VP + RV +   V LA+SL+
Sbjct: 182 MGMGEPLDNPEAVFKTIDVIHSPWGINLSRKKITVSTSGIVPEMWRVADA-KVRLAVSLN 240

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
             ++++R+ ++PIN+++  + L++AC+ +  +S   +ITFEYV+LKGI D    A  L+K
Sbjct: 241 GPNDEIRSQVMPINKRWDTKALLEACKEHYRVS-KDKITFEYVLLKGITDQLEHARQLVK 299

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++K +P KIN+IPFN  PG  Y   D   I  F   +   G    +R   G DI AACGQ
Sbjct: 300 LVKDVPCKINIIPFNEHPGSGYERPDDDTIQAFHTELMNLGAHVLLRRSMGRDIFAACGQ 359

Query: 365 LKSLSKRIPKVPRQEMQITG 384
           L ++ +R   +     ++ G
Sbjct: 360 LTTVKERPQTMDISNSRLAG 379


>gi|257125946|ref|YP_003164060.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b]
 gi|257049885|gb|ACV39069.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b]
          Length = 372

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/372 (34%), Positives = 202/372 (54%), Gaps = 26/372 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           ++ ++K  ++GM  E L+   ++I    R  +   SQ++ W++ + + +F   S+IS++ 
Sbjct: 17  IDTVEKIDILGMDLESLQRKFVEI----RLKKFNASQVFDWLHNKLVFNFDEFSNISKKD 72

Query: 61  RHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           R +L + F +   E    ++S DG T K+L     + +     IE+V I  K+R TLCVS
Sbjct: 73  REILKEKFYVEKLEFKTHQVSEDGDTEKFLFELKDKRL-----IESVLISHKNRHTLCVS 127

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ+GC + C FC T T    RNL+  EILLQ    +                +   G K+
Sbjct: 128 SQIGCLIGCDFCATATMTYERNLSISEILLQYYYVQKH--------------LLQRGEKL 173

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238
            N+V MGMGEP  N+D V  S+++ +   G +FSKR  T+STSG V  I R  E E  + 
Sbjct: 174 GNVVYMGMGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRFTENENQIN 233

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLH+V +D+RN ++PIN+++ ++ L ++   Y   +   RITFEY+++  +N  P D
Sbjct: 234 LAISLHSVKDDVRNEIMPINKRWGVKQLKESLLEYQKQT-KNRITFEYILINDLNCEPED 292

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L   L      +NLIP+NP  G  Y    ++    F + +K    +  +R  +G DI
Sbjct: 293 ARELAGFLNSFSCLVNLIPYNPVGGKPYKTPSKQKQREFYKLLKDKNVNVTLRETKGQDI 352

Query: 359 LAACGQLKSLSK 370
            AACGQLK+  +
Sbjct: 353 AAACGQLKAKKE 364


>gi|213421342|ref|ZP_03354408.1| hypothetical protein Salmonentericaenterica_27889 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 317

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 137/322 (42%), Positives = 185/322 (57%), Gaps = 22/322 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           +N   K +L+ + R+++ E    +G        R  Q+ KW+Y     +F  M+DI++ +
Sbjct: 16  LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +   I  PE+V+E+ S DGT KW +            +ETVYIPE  R TLCVSS
Sbjct: 72  RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSS 125

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC+L C FC T  Q   RNL   EI+ QV  A  ++G              +  R I+
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPIT 175

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP + ++G+ I V LA
Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 235

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298
           ISLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EYVML  +ND    
Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295

Query: 299 ALNLIKILKGIPAKINLIPFNP 320
           A  L ++LK  P KINLIP+NP
Sbjct: 296 AHQLAELLKETPCKINLIPWNP 317


>gi|333024150|ref|ZP_08452214.1| putative cfr family radical SAM enzyme [Streptomyces sp. Tu6071]
 gi|332744002|gb|EGJ74443.1| putative cfr family radical SAM enzyme [Streptomyces sp. Tu6071]
          Length = 369

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 183/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA+  IG        R  Q+ +  + R  +D    +DI    R  L +
Sbjct: 21  RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE 76

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   ISCD   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 77  ALLPELMSVV-RHISCDDDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+A EI+ Q++     L D           IP    ++SNIV 
Sbjct: 131 GMNCPFCATGQAGLDRNLSAAEIVHQIVEGMRALRD---------GEIPGGPARLSNIVF 181

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP I R  +E     LA+
Sbjct: 182 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAV 241

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   R++ EY +++ IND       
Sbjct: 242 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RVSIEYALIRDINDQAWRGDL 300

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LK     +NLIP NP PG ++  S  +D   F + I   G    +R  RG +I  A
Sbjct: 301 LGRLLKNKRVHVNLIPLNPTPGSKWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGA 360

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 361 CGQLAAAER 369


>gi|283956169|ref|ZP_06373654.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792323|gb|EFC31107.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 356

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 141/378 (37%), Positives = 204/378 (53%), Gaps = 42/378 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++  + EEL E +  +         R  QI++WIY +   +F  MS + +++R  L Q
Sbjct: 5   VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
           +F     + V  + S DG+ K+L           + IE+V +P K              R
Sbjct: 57  NFHFSPVKCVKNEQSKDGSIKYLFELVD-----GLRIESVLLPMKEEKIDAEGKRISHAR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +                  
Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  NIV MGMGEPL N  NV K++ I S + GL+ S RR T+STSG    I  +G+
Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGQ 217

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV+++LR  L+PIN+ Y +  ++DA R +P +   +R+ FEY+++ GI
Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR 
Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRE 336

Query: 353 PRGLDILAACGQLKSLSK 370
            +GLDI AACGQLK  +K
Sbjct: 337 SKGLDISAACGQLKERAK 354


>gi|270296162|ref|ZP_06202362.1| cfr family radical SAM enzyme [Bacteroides sp. D20]
 gi|317480739|ref|ZP_07939825.1| cfr family radical SAM enzyme [Bacteroides sp. 4_1_36]
 gi|270273566|gb|EFA19428.1| cfr family radical SAM enzyme [Bacteroides sp. D20]
 gi|316903080|gb|EFV24948.1| cfr family radical SAM enzyme [Bacteroides sp. 4_1_36]
          Length = 346

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 196/373 (52%), Gaps = 29/373 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  L+G+   EL+  +  +G+P         QI  W+Y + +     MS++S + R L
Sbjct: 1   MQKRPLLGLTLAELQNVVKNLGMPG----FSAKQIASWLYDKKVASIDEMSNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L + + +     VD   S DGT K+L R      G    +E VYIP++ R TLCVSSQVG
Sbjct: 57  LKEIYEVGAEAPVDAMRSVDGTVKYLYR-----AGEGHFVEAVYIPDEDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLT+ +I+ Q+                          K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTANLTSNQIINQI-------------------SSLPERDKLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L I + S G ++S +R+TLS+ G    + R   E    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALEIMTASYGYAWSPKRVTLSSVGLKKGLQRFIGESDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R  L+P  + + +  +++  R+Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPIPLQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLPYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  +INLI F+  PG     +D + +  F + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRINLIRFHAIPGVNLEGADMETMTAFRDYLTSHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKSLSKRIPKVP 376
            L +  +   K  
Sbjct: 332 MLSTAKQEENKEE 344


>gi|118602407|ref|YP_903622.1| radical SAM protein [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|205829871|sp|A1AW44|RLMN_RUTMC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118567346|gb|ABL02151.1| 23S rRNA m(2)A-2503 methyltransferase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 356

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/373 (40%), Positives = 204/373 (54%), Gaps = 24/373 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K++L+   +  L +  + +G        RT QI +WIY     DF+ M + S+ +R  
Sbjct: 1   MNKKNLLSFNQNALNDFFVGLG----EKPYRTKQIMQWIYKDHEFDFEKMLNFSKSLRDE 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L++   +    +V +    DG  KW+L            IE +YIPEK+RGTLC+SSQVG
Sbjct: 57  LSKVVCVELLRVVKQNFILDGVIKWVLALDKNNH-----IEMIYIPEKNRGTLCISSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C+FC TG Q   +NLT  EI+ QVL+A                 + S  ++ISN+V
Sbjct: 112 CGLACTFCSTGMQGFNKNLTTAEIIAQVLIASRY--------------LNSKTKRISNVV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N   V  +  +  D +    S+R++T+STSG VP + R+ E   V LA+SL
Sbjct: 158 FMGMGEPLLNEHAVYNACDLLLDDLAFGLSRRKVTISTSGVVPAMLRMSERTPVSLAVSL 217

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNL 302
           HA  + LRN LVPIN+KY LE L+ AC+ Y      +R I FEYVMLKG+NDS   A  L
Sbjct: 218 HASDDHLRNELVPINQKYSLEELLKACKVYLQAGTQKRHILFEYVMLKGVNDSIEHANKL 277

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K+LKGI AKINLIPFN +   +Y  S  + I  F   +   G  +  R  RG DI  AC
Sbjct: 278 VKLLKGISAKINLIPFNSFEKTQYQTSSAQTIEKFQNILYHQGIRTMTRRTRGEDIGGAC 337

Query: 363 GQLKSLSKRIPKV 375
           GQL        K 
Sbjct: 338 GQLAGKVLDKTKR 350


>gi|327542013|gb|EGF28512.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
           baltica WH47]
          Length = 365

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/373 (35%), Positives = 192/373 (51%), Gaps = 26/373 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  L+    ++L++ L + G        R  QI +W++      F+ M+D+  ++R  L
Sbjct: 18  RKNHLLNWSLDQLKDWLQEQG----QKPFRAKQIRRWLFSGRATSFEEMTDLPAKLRAQL 73

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +HF+I          S DGT K L+R          E+E V + +  R ++CVSSQVGC
Sbjct: 74  EEHFAIFNATEAVVSKSKDGTEKILVRL-----ADGGEVECVLLRDGPRRSICVSSQVGC 128

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC +G   + RNLT  EIL Q+L  +  L                   ++S+IVM
Sbjct: 129 AMGCVFCASGLDGVDRNLTGGEILEQMLRLQQRL---------------PADERLSHIVM 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N   V  +L +A    GL  S RRIT+ST G  P I ++    I   LA+SL
Sbjct: 174 MGMGEPLANLPGVLSALDVARSEDGLGISPRRITISTVGLPPAIDKLAAAGIPYNLAVSL 233

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++LR+ LVP+NRK  +E ++ A   Y   S   R+TFEYV+L GIND    A  L 
Sbjct: 234 HAPNDELRSELVPVNRKIGIEPVLQAADRYFHASGR-RLTFEYVLLGGINDGDEHARQLS 292

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +IL+G    +N+IP+NP  G  Y       I  F   ++ +G +   R  +G +I AACG
Sbjct: 293 QILRGRSVMMNVIPYNPVAGLPYRTPSGAAIARFRAILESAGVNVNFRQRKGDEINAACG 352

Query: 364 QLKSLSKRIPKVP 376
           QL+     +    
Sbjct: 353 QLRRNRGELKATK 365


>gi|148926804|ref|ZP_01810483.1| hypothetical protein Cj8486_1762 [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145844529|gb|EDK21636.1| hypothetical protein Cj8486_1762 [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 356

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/378 (37%), Positives = 205/378 (54%), Gaps = 42/378 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++  + EEL E +  +         R  QI++WIY +   +F  MS++ +++R  L Q
Sbjct: 5   VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSNLPKDLRLELAQ 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
           +F     + V  + S DG+ K+L           + IE+V +P K              R
Sbjct: 57  NFHFSPVKCVKNEQSKDGSIKYLFELVD-----GLRIESVLLPMKEEKIDAEGKRISHAR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +                  
Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  NIV MGMGEPL N  NV K++ I + + GL+ S RR T+STSG    I  +G+
Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQ 217

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV+++LR  L+PIN+ Y +  ++DA R +P +   +R+ FEY+++ GI
Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR 
Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRE 336

Query: 353 PRGLDILAACGQLKSLSK 370
            +GLDI AACGQLK  +K
Sbjct: 337 SKGLDISAACGQLKERAK 354


>gi|317475867|ref|ZP_07935124.1| cfr family radical SAM enzyme [Bacteroides eggerthii 1_2_48FAA]
 gi|316908027|gb|EFV29724.1| cfr family radical SAM enzyme [Bacteroides eggerthii 1_2_48FAA]
          Length = 345

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 194/371 (52%), Gaps = 29/371 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+G+   EL+  +  +G+P         QI  W+Y + +     M+++S + R LL 
Sbjct: 2   KQPLLGLTLTELQAVVKNLGMPG----FAAKQIASWLYGKKVASIDEMTNLSLKHRELLK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             + +     VD   S DGT K+L R     +G    +E VYIPE+ R TLCVSSQVGC 
Sbjct: 58  DIYEVGGEAPVDAMRSVDGTVKYLYR-----VGEGHYVEAVYIPEEDRATLCVSSQVGCK 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLTA +I+ Q+                          K++N+VMM
Sbjct: 113 MNCKFCMTGKQGFTGNLTAGQIINQI-------------------NSLPERDKLTNVVMM 153

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V K+L + + S G  +S +R+TLS+ G    + R  EE    LAISLH+
Sbjct: 154 GMGEPLDNLDEVLKALEVMTASYGYGWSPKRVTLSSVGLRKGLQRFVEESDCHLAISLHS 213

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  +++  R+Y   S  RR++FEY++ KG+NDS   A  L+K+
Sbjct: 214 PVPQQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  +INLI F+  PG +   +D + +    + +   G  + IR  RG DI AACG L
Sbjct: 273 LRGLDCRINLIRFHAIPGVDLEGADMETMTALRDYLTSHGLFTTIRASRGEDIFAACGML 332

Query: 366 KSLSKRIPKVP 376
            +  +   K  
Sbjct: 333 STAKQEGNKEE 343


>gi|305432592|ref|ZP_07401753.1| cfr family radical SAM enzyme [Campylobacter coli JV20]
 gi|304444303|gb|EFM36955.1| cfr family radical SAM enzyme [Campylobacter coli JV20]
          Length = 356

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 142/380 (37%), Positives = 205/380 (53%), Gaps = 42/380 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++  + EELEE +  +         R  QI++WIY +   +F  MS + +++R  L Q
Sbjct: 5   INILDFLPEELEEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
            +     + V  + S DG+ K+L           + IE+V +P K              R
Sbjct: 57  TYHFSPLKCVKNEQSKDGSIKYLFEL-----IDGLRIESVLLPMKEEQFDEEGKRISHTR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +                  
Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  NIV MGMGEPL N  NV K++ I S + GL+ S RR T+STSG    I  +GE
Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGE 217

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV+++LR  L+PIN+ Y +  ++DA R +P +   +R+ FEY+++ GI
Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVRAFP-IDQRKRVMFEYLLIDGI 276

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR 
Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRE 336

Query: 353 PRGLDILAACGQLKSLSKRI 372
            +GLDI AACGQLK  +K +
Sbjct: 337 SKGLDISAACGQLKERAKEL 356


>gi|265762562|ref|ZP_06091130.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           2_1_16]
 gi|263255170|gb|EEZ26516.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           2_1_16]
          Length = 344

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 194/367 (52%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+     +G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MPKYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L   + +     VDE  S DGT K+L +           +E VYIP++ R TLCVSSQVG
Sbjct: 57  LKGEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    +LTA +IL Q+                          K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTASLTANQILNQIAALPERD-------------------KLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L I + S G  +S +RITLS+ G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R+ L+P  R + ++ ++D  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPFPSQRSELMPAERAFSIKEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLIYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +  + + +F + +   G  + IR  RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGTGMETMTSFRDYLTSHGLFTTIRASRGEDIFAACG 331

Query: 364 QLKSLSK 370
            L +  +
Sbjct: 332 MLSTAKQ 338


>gi|295396359|ref|ZP_06806525.1| cfr family radical SAM enzyme [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294970799|gb|EFG46708.1| cfr family radical SAM enzyme [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 441

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 126/406 (31%), Positives = 188/406 (46%), Gaps = 52/406 (12%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L  +  EEL +A+   G+P      R  Q+    YV    D   M+D+  + R  L  
Sbjct: 45  QHLADLSLEELTQAVKDKGLPG----FRAKQLATHYYVHNTTDPADMTDLPADQREELAA 100

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F       V    + DG T K+L R     +     +E+V +  ++R TLCVSSQ GC 
Sbjct: 101 EFFPPLLTEVRRLRTEDGDTIKFLWRLFDGAM-----VESVLMRYRNRITLCVSSQCGCG 155

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG-------------------------- 159
           + C FC TG Q L RN++  EI+ QV+ A  ++                           
Sbjct: 156 MNCPFCATGQQGLTRNMSTAEIVDQVIQANRVIAAGELAPTAGATTNYLGEEAAEVGSEA 215

Query: 160 ---------DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS--DSM 208
                       G  +        V  +++N+V MGMGEPL N+  V  ++   +     
Sbjct: 216 DASDNSATLQAAGTPETSATTSAGVHDRVTNVVFMGMGEPLANYKRVMNAVRRFTTPAPA 275

Query: 209 GLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           GL  S RRIT+ST G VP I ++  E I V  A+SLHA  +DLR+ ++P+N ++  +  I
Sbjct: 276 GLGMSPRRITVSTVGLVPGIKKLAAENIPVTFALSLHAPDDDLRDEMIPVNTRWNADEAI 335

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIP-AKINLIPFNPWPGC 324
           DA   Y   +  RR++ EY ++K +ND    A  L K L  +G     +N IP NP PG 
Sbjct: 336 DAAYDYY-KTTGRRVSIEYALIKDMNDHAWRAELLAKKLNARGRGWVHVNPIPLNPTPGS 394

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
            +  S+ +    F   + ++G  + IR  RG DI  ACGQL +  +
Sbjct: 395 VWTASEPEVAAEFVRRLVKAGVPTTIRDTRGKDIDGACGQLAAEDE 440


>gi|318056586|ref|ZP_07975309.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           SA3_actG]
 gi|318075677|ref|ZP_07983009.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           SA3_actF]
          Length = 369

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 182/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA+  IG        R  Q+ +  + R  +D    +DI    R  L +
Sbjct: 21  RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE 76

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   ISCD   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 77  ALLPELMSVV-RHISCDDDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++     L D           IP    ++SNIV 
Sbjct: 131 GMNCPFCATGQAGLDRNLSTAEIVHQIVEGMRALRD---------GEIPGGPARLSNIVF 181

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP I R  +E     LA+
Sbjct: 182 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAV 241

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   R++ EY +++ IND       
Sbjct: 242 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RVSIEYALIRDINDQAWRGDL 300

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LK     +NLIP NP PG ++  S  +D   F + I   G    +R  RG +I  A
Sbjct: 301 LGRLLKNKRVHVNLIPLNPTPGSKWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGA 360

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 361 CGQLAAAER 369


>gi|312130260|ref|YP_003997600.1| 23S rRNA m(2)a-2503 methyltransferase [Leadbetterella byssophila
           DSM 17132]
 gi|311906806|gb|ADQ17247.1| 23S rRNA m(2)A-2503 methyltransferase [Leadbetterella byssophila
           DSM 17132]
          Length = 368

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 197/363 (54%), Gaps = 24/363 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK+ L  +  E+L+  L ++G P      R  QI +W++ +     Q M+++S+ +R  L
Sbjct: 25  KKKDLRKVKWEDLQAWLKQVGEPA----FRAKQIREWLWQKSAWSIQDMTNLSKSLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              F I    +   + S DGT K   +     +     +E V IP  +R T C+SSQVGC
Sbjct: 81  EAEFEIRPVTVHTAQYSADGTIKSGFKLYDGHL-----VEGVLIPTDTRMTACISSQVGC 135

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SLTC FC TG     RNL A EI  QV+L ++   +                + ++NIV 
Sbjct: 136 SLTCKFCATGYMNRERNLDAAEIYDQVILIKNQAEE-------------RYSQPLTNIVY 182

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N+  V +S+   +   GL++S +RIT+ST+G    I ++G++ +   LA+SL
Sbjct: 183 MGMGEPLLNYAAVLESVERITSPEGLNWSPKRITVSTAGIAKMIKKLGDDGVKFNLALSL 242

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++ RN ++PIN    L+ L +A   Y       +IT EY++  G ND   DA  L+
Sbjct: 243 HAANDEKRNTIMPINESNSLKNLSEAL-QYFYKKTGNKITLEYIVFHGFNDKIADAKELL 301

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + +K +P+K+N+I +NP     ++ +D + I  F++ ++ +  +  IR  RG DI AACG
Sbjct: 302 EFVKRVPSKVNIIEYNPISEANFVNADPEAIDKFAKYLEDNRVTVNIRRSRGKDIDAACG 361

Query: 364 QLK 366
           QL 
Sbjct: 362 QLA 364


>gi|27262416|gb|AAN87489.1| florfenicol resistance protein [Heliobacillus mobilis]
          Length = 360

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/371 (35%), Positives = 202/371 (54%), Gaps = 28/371 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  L G++ EE+ + L + G P      R  QI+KW+  R +R+   M+D+ Q +R  +
Sbjct: 6   EKTELRGLLPEEMAQTLQEWGHPA----YRGKQIFKWVQSRAVREAAEMTDLPQALRSKI 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGTLCVS 119
                +    +   ++S DGT K+L +     +     IETV +P +      R T+C+S
Sbjct: 62  EAERWLRPLALSCCRVSKDGTEKYLWQLADGEL-----IETVLMPYRRSQTRDRVTVCLS 116

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +Q GC L C FC TG Q   RNLTA EI+ QVL      G                  K+
Sbjct: 117 TQAGCPLGCKFCATGQQGFRRNLTAGEIVSQVLDITHRKGQ------------SDPDFKV 164

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           +N+V MGMGEP  N++ V++++ + +   G +  +RRIT+STSG VP I R   E   + 
Sbjct: 165 TNLVFMGMGEPFLNYEQVRRAIELFTHPEGQNIGQRRITVSTSGIVPGIERFARENWEIN 224

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  + LR+  +P+NR+YP+E +++ACR Y      RR++ EY +++G+ND   D
Sbjct: 225 LALSLHAADDQLRSQWMPVNRQYPIEKVLNACRRYWEQ-GRRRLSVEYALIEGVNDRLED 283

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L K+    P  +N+IP NP         D+  +V F + +KR G  + IR  RG+DI
Sbjct: 284 ARQLGKLFTRWPIHLNVIPVNPVTESGARRPDKARMVQFLDELKRQGIDAVIREERGVDI 343

Query: 359 LAACGQLKSLS 369
            AACGQL+  +
Sbjct: 344 EAACGQLRGAA 354


>gi|260911598|ref|ZP_05918183.1| cfr family radical SAM enzyme [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634304|gb|EEX52409.1| cfr family radical SAM enzyme [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 355

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 190/365 (52%), Gaps = 29/365 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+G   +EL+   +  G+P         Q+  W+Y + +   + M++IS+  R  L 
Sbjct: 5   KIPLLGHTLDELKAIAVDNGLPA----FAGKQMAVWLYDKHVDTIEEMTNISKANREKLA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QH+ I   + +D + S DGT K+L    +        +ETVYIP++ R TLCVS QVGC 
Sbjct: 61  QHYEIGAAKFIDAQYSKDGTIKYLFPTESGKF-----VETVYIPDRDRATLCVSCQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLTA +IL Q+                          K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGNLTARDILNQIYALPEQQ-------------------KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DNV K   I +   G ++S +RIT+S+ G    + R  +E    +AIS+H 
Sbjct: 157 GQGEPMDNLDNVLKVTQILTADYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              + R  ++P  +   +E ++   + Y   ++ RR++FEY+M  G+ND+P  A  L+K+
Sbjct: 217 PIPEQRASIMPAEKGLSIEEIVQLLKQY-DFTHQRRLSFEYIMFGGLNDTPLHARQLVKL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++G+  ++NLI F+  P      SD+K + TF + +   G  + IR  RG DI AACG L
Sbjct: 276 VEGLDCRVNLIRFHQIPNVNLNNSDEKRMETFRDYLTNHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSK 370
            +  +
Sbjct: 336 STAKQ 340


>gi|86607188|ref|YP_475951.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
           JA-3-3Ab]
 gi|123751756|sp|Q2JRQ8|RLMN_SYNJA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|86555730|gb|ABD00688.1| radical SAM enzyme, Cfr family [Synechococcus sp. JA-3-3Ab]
          Length = 356

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 185/375 (49%), Gaps = 36/375 (9%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+G     L++  ++ G P      R  Q+  W+Y +GIR  Q ++   +  R  L + 
Sbjct: 7   PLLGQSLAALKDWAVEQGQPA----YRGQQLHTWLYHKGIRSLQEVTVFPKAWREALQE- 61

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
           + +   ++V    S DGT K+LL+     +     IETV IP   R T+CVSSQVGC + 
Sbjct: 62  YPVGRSQVVQRIESRDGTVKFLLQLADGEL-----IETVGIPTARRLTVCVSSQVGCPMA 116

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC TG     RNL   EIL QVL  +                    GR++S++V MGM
Sbjct: 117 CNFCATGKMGYRRNLKLHEILDQVLTVQE-----------------DFGRRVSHVVFMGM 159

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAV 246
           GEPL N D V +++   +    +   +R ITLST G    I  + + ++ + LA+SLHA 
Sbjct: 160 GEPLLNRDTVVQAIRSLNQD--IGIGQRHITLSTVGVPRQIPWLAQQDLQITLAVSLHAP 217

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           + +LR  L+P    YPL+ LI  CR Y   S   RI+FEY +L G+ND P  A  L  +L
Sbjct: 218 NQELRQQLIPSAAHYPLDALIQDCRDYMLCSGR-RISFEYTLLAGVNDLPIHARQLAHLL 276

Query: 307 K-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +     G    +NLIP+NP    +Y       +  F   ++       +R  RGLD  AA
Sbjct: 277 RQASQAGARLHVNLIPYNPIAEADYQRPHPTRVAEFVRLLEEHHVQVSVRQTRGLDSNAA 336

Query: 362 CGQLKSLSKRIPKVP 376
           CGQL+    R    P
Sbjct: 337 CGQLRGSFLRASPEP 351


>gi|295836269|ref|ZP_06823202.1| cfr family radical SAM enzyme [Streptomyces sp. SPB74]
 gi|197697366|gb|EDY44299.1| cfr family radical SAM enzyme [Streptomyces sp. SPB74]
          Length = 369

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 181/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA+  IG        R  Q+ +  + R  +D    +DI    R  L +
Sbjct: 21  RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE 76

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   ISCD   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 77  ELLPELMSVV-RHISCDDDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 130

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++     L D           IP    ++SNIV 
Sbjct: 131 GMNCPFCATGQAGLDRNLSTAEIVHQIVEGMRALRD---------GEIPGGPARLSNIVF 181

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP I R  +E     LA+
Sbjct: 182 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAV 241

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   R++ EY +++ IND       
Sbjct: 242 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RVSIEYALIRDINDQAWRGDL 300

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LK     +NLIP NP PG  +  S  +D   F + I   G    +R  RG +I  A
Sbjct: 301 LGRLLKNKRVHVNLIPLNPTPGSRWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGA 360

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 361 CGQLAAAER 369


>gi|299141914|ref|ZP_07035049.1| radical SAM enzyme, Cfr family [Prevotella oris C735]
 gi|298576765|gb|EFI48636.1| radical SAM enzyme, Cfr family [Prevotella oris C735]
          Length = 348

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 201/374 (53%), Gaps = 30/374 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L+GM   EL+EA  ++G+P         QI KW+Y   ++    M++IS+  R  L 
Sbjct: 5   KKALLGMTLNELKEACKQLGMPA----FTGGQIAKWLYTHHVKHIDEMTNISKTNRAKLE 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + ++I   E ++ ++S DGT K+L             +ETVYIPE  R TLCVS QVGC 
Sbjct: 61  EAYTIGCAEALEAQLSKDGTIKYLF-----PTASGKFVETVYIPENDRATLCVSCQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LT  +IL Q+     +                    K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLTTCDILNQIYSLPEVD-------------------KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DN+ ++  I +   G ++S +RIT+S+ G    + R  EE    +AISLH+
Sbjct: 157 GQGEPMDNLDNILRTTEILTADYGWAWSPKRITVSSVGVKNKLKRFIEESDCHVAISLHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              + R  L+P  +   +  +++  R+Y   S+ RR++FEY++  G+NDS   A  L+K+
Sbjct: 217 PIAEQRAELMPAQKGMSIAEIVELLRNY-DFSHQRRLSFEYIVFGGVNDSMTHARELVKL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+  +INLI F+  P      +D+K +    + +   G  + IR  RG DI AACG L
Sbjct: 276 LKGLDCRINLIRFHQIPDVPLHGADEKRMEELRDYLTSHGIFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSKRIPKVPRQE 379
            S SK+I ++  ++
Sbjct: 336 -STSKKIGEIRHEQ 348


>gi|282879497|ref|ZP_06288231.1| radical SAM enzyme, Cfr family [Prevotella timonensis CRIS 5C-B1]
 gi|281306644|gb|EFA98670.1| radical SAM enzyme, Cfr family [Prevotella timonensis CRIS 5C-B1]
          Length = 350

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 124/372 (33%), Positives = 198/372 (53%), Gaps = 30/372 (8%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N +KK+ L+GM   EL+E +  + +P         QI KW+Y++ +     M+++S+  R
Sbjct: 7   NIVKKK-LMGMTLSELQEVVHHLNMPT----FTAGQIAKWLYLQQVTSIDEMTNLSKNNR 61

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            +L + F I   + +D + S DGT K+L    +  +     +ETVYIP++ R TLCVSSQ
Sbjct: 62  QILQESFEIGCMKPLDAQYSKDGTIKYLFPTASGNL-----VETVYIPDQDRATLCVSSQ 116

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC TG Q    NLT  +IL Q+                          K++N
Sbjct: 117 VGCKMNCLFCQTGKQGFEGNLTYTDILNQIYSL-------------------PEREKLTN 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MG GEP+ N DNV ++  I +   G ++S +RIT+S+ G    + R  +E    +AI
Sbjct: 158 IVFMGQGEPMDNIDNVLRATQILTAPYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAI 217

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+   + R  L+P  +  P++ +++  R Y   ++ RR++FEY++  G NDS R A  
Sbjct: 218 SLHSAIPEQRRELMPAEKAMPIQEIVELLREY-DFAHQRRLSFEYIVFDGENDSIRHAQK 276

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           ++++L+G+  ++NLI F+  P      +D   +  F + +   G  + IR  RG DI AA
Sbjct: 277 VVELLRGLDCRVNLIRFHQIPNVSLRGTDTATMERFRDYLTSHGIFTTIRASRGQDIFAA 336

Query: 362 CGQLKSLSKRIP 373
           CG L +  K+  
Sbjct: 337 CGLLSTAKKKTT 348


>gi|260905210|ref|ZP_05913532.1| radical SAM enzyme, Cfr family protein [Brevibacterium linens BL2]
          Length = 410

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 124/402 (30%), Positives = 192/402 (47%), Gaps = 48/402 (11%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K+ L  M  +E  +A+ ++G+P      R  QI    +     D + M+D+ +++R  L
Sbjct: 18  PKQHLADMTMDERIDAVKEMGLPA----FRAKQISTHYFSHYQTDVESMTDLPKDLRADL 73

Query: 65  NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            + F       V    + +G T K+L R     +     +E+V +  ++R TLCVSSQ G
Sbjct: 74  QERFFPHLLTEVRRLRTANGDTIKFLWRLYDGAL-----VESVLMRYRNRVTLCVSSQCG 128

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV-------- 175
           C + C FC TG Q L RN++A EI+ QV+ A  ++            +            
Sbjct: 129 CGMNCPFCATGQQGLTRNMSAAEIVEQVIRANQVIAAGELAPAPTSDMPAEGETALGAEA 188

Query: 176 -----------------------GRKISNIVMMGMGEPLCNFDNVKKSLSIASDS--MGL 210
                                    ++SNIV MGMGEPL N+  V  ++    +    GL
Sbjct: 189 DDEQGETSEATVDESGTSTSATGPERVSNIVFMGMGEPLANYKRVMNAVRRFVEPAPQGL 248

Query: 211 SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S RRIT+ST G VP I ++  E+I V  A+SLHA  ++LR+ ++P+N ++  +  IDA
Sbjct: 249 GMSARRITISTVGLVPGINKLAAEDIPVTFALSLHAPDDELRDEMIPVNTRWKADEAIDA 308

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIP-AKINLIPFNPWPGCEY 326
             +Y  ++   R++ EY ++K +ND P  A  L K L  +G     +N IP NP PG  +
Sbjct: 309 AYNYYQVTGR-RVSIEYALIKDMNDHPWRAELLAKKLNARGRGWVHVNPIPLNPTPGSVW 367

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
             S+ +    F   +   G  + IR  RG DI  ACGQL + 
Sbjct: 368 TASEPEVADEFVRRLIDQGIPTTIRDTRGSDIDGACGQLAAA 409


>gi|315639331|ref|ZP_07894493.1| cfr family radical SAM enzyme [Campylobacter upsaliensis JV21]
 gi|315480657|gb|EFU71299.1| cfr family radical SAM enzyme [Campylobacter upsaliensis JV21]
          Length = 356

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 139/379 (36%), Positives = 205/379 (54%), Gaps = 42/379 (11%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++ ++ EEL E        +     R  QI +WIY +   DF  MS++ + +R  L ++
Sbjct: 6   NILDLLPEELNE--------KIQPMFRVKQICQWIYQKYADDFSKMSNLPKNLREELAKN 57

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------RG 114
           +     + V E+ S DG+ K+L           + IE+V +P K              + 
Sbjct: 58  YHFEPLKCVKEERSKDGSIKYLFELKD-----GLRIESVLLPMKEEKFDGEGKRLSHAKF 112

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           T+CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +                   
Sbjct: 113 TICVSSQVGCRSGCSFCLTAKGGLKRNLSAGEIVGQILWIKRQN--------------HI 158

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
              +  NIV MGMGEPL N +NV K++ I S +  L+ S RR T+STSG    I  +GE 
Sbjct: 159 PYERRVNIVYMGMGEPLDNLNNVAKAVRILSHNDTLAISVRRQTISTSGLAKQIKELGEM 218

Query: 235 -IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
            +GV+LAISLHAV+++LR+ L+PIN+ Y +  ++ A R +P +   +++ FEY+++ GIN
Sbjct: 219 NLGVLLAISLHAVNDELRSKLMPINKAYNIASVMQAVREFP-IDMRKKVMFEYLLIDGIN 277

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D    A  L+K+L GI AK+NLI FNP  G  Y     ++ V F + + + G +  IR  
Sbjct: 278 DKIEHAKELVKLLNGIKAKVNLILFNPHQGSIYKRPSLENAVKFQDLLSQKGVTCTIRES 337

Query: 354 RGLDILAACGQLKSLSKRI 372
           +GLDI AACGQLK   K +
Sbjct: 338 KGLDISAACGQLKEREKNL 356


>gi|227539135|ref|ZP_03969184.1| Fe-S-cluster redox protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300770634|ref|ZP_07080513.1| cfr family radical SAM enzyme [Sphingobacterium spiritivorum ATCC
           33861]
 gi|227240817|gb|EEI90832.1| Fe-S-cluster redox protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300763110|gb|EFK59927.1| cfr family radical SAM enzyme [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 352

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/365 (34%), Positives = 197/365 (53%), Gaps = 24/365 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             +  +  ++L++ L+++G        R  QI++W++ +   DF  MS++S+ +R  L  
Sbjct: 8   IDIRSLTLDQLKQKLVEMG----EQGFRAKQIYEWLWQKSCTDFDEMSNLSKALRDTLKA 63

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +F+I    + + ++S D T K         +     IE V IP   R T CVSSQVGCSL
Sbjct: 64  NFAINAVTVKESQVSSDRTIKSSFWLYDNNV-----IEGVLIPTTDRMTACVSSQVGCSL 118

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           TC FC TG     RNL A+EI  QV+L      +               G+ ++NIV MG
Sbjct: 119 TCKFCATGYMDRKRNLNADEIYDQVVLISKQAEE-------------KYGQPLTNIVYMG 165

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEPL N+ N+ KS+   +   GL+ + +RIT+ST+G    I ++G++ +   LA+SLHA
Sbjct: 166 MGEPLLNYANMMKSVERITSPDGLNMAAKRITVSTAGIAKMIKKLGDDGVKFNLALSLHA 225

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++  RN ++PIN +  L+ L +A + Y  L     ITFEY++    ND   DA  L + 
Sbjct: 226 ANDQKRNEIMPINEQNTLKALAEALK-YFYLKTKSPITFEYIVFNNFNDELEDAKELARF 284

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            K +P+K+NLI +NP    ++  +D   I  F+E ++  G  + +R  RG DI AACGQL
Sbjct: 285 CKHVPSKVNLIEYNPISLADFTNADADKIDVFAEYLRSQGIITNVRRSRGKDIDAACGQL 344

Query: 366 KSLSK 370
               +
Sbjct: 345 AIKEE 349


>gi|188995920|ref|YP_001930172.1| hypothetical protein PGN_2057 [Porphyromonas gingivalis ATCC 33277]
 gi|259491992|sp|B2RMI0|RLMN_PORG3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|188595600|dbj|BAG34575.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 352

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/363 (37%), Positives = 192/363 (52%), Gaps = 30/363 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK  L+GM  EEL    L++G+P    R    Q+ +WIYVR   DF  M++ISQ  R  L
Sbjct: 9   KKVVLLGMSLEELTTVALRMGMP----RFAGKQLAEWIYVRRATDFAEMTNISQANRQKL 64

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + + +      D + S DGT+K+L       +G    +E+V IPE  R TLC+SSQVGC
Sbjct: 65  AEIYDLGRYPWSDVQCSVDGTKKYLF-----PVGEGRFVESVLIPEGDRATLCISSQVGC 119

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG Q    NL+A EIL Q+                          +++N+V 
Sbjct: 120 KMDCLFCMTGKQGWNGNLSAAEILNQIFSV-------------------DEAAELTNLVY 160

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N D V +S+   ++  G+ +S +RIT+ST G    + R   E    LA+SLH
Sbjct: 161 MGMGEPLDNTDEVLRSIEALTEPWGMGWSPKRITVSTIG-AKGLERFLAESRCHLAVSLH 219

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +   + R  L+P  + +P+   +D  R Y   S  RR++FEY++  G+ND  R A  L  
Sbjct: 220 SPFPEERRKLMPGEKAFPIMQTLDRIRAY-DFSGQRRVSFEYIVFDGLNDDMRHADELAA 278

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           IL+GIP +INLI F+  P      SD   +  F + ++  GY+  IR  RG DI AACG 
Sbjct: 279 ILRGIPCRINLIRFHKIPAVSLRSSDTARMEAFRKRMESHGYTCTIRASRGEDIFAACGM 338

Query: 365 LKS 367
           L +
Sbjct: 339 LST 341


>gi|313680864|ref|YP_004058603.1| 23S rRNA m(2)a-2503 methyltransferase [Oceanithermus profundus DSM
           14977]
 gi|313153579|gb|ADR37430.1| 23S rRNA m(2)A-2503 methyltransferase [Oceanithermus profundus DSM
           14977]
          Length = 370

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/337 (38%), Positives = 183/337 (54%), Gaps = 21/337 (6%)

Query: 31  VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL 90
              R  QI  W+Y +G R+F+ M+D+ + +R  L Q + I    +V    S DG+ K+L 
Sbjct: 50  KGYRKGQIASWLYKKGAREFEEMTDLPRRLREALEQDWRISEFALVQAFPSSDGSVKYLF 109

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150
                        E VY+P   R T+C+SSQVGC   C+FC TG     RNLT  EIL Q
Sbjct: 110 TLHD-----GRRTEAVYLPYADRKTVCISSQVGCPAGCTFCATGKMGFGRNLTGPEILDQ 164

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           +L      G  P              R+I N+V+MGMGEPL N++N+  ++    D   L
Sbjct: 165 ILAVAYHQGLGP--------------REIRNVVLMGMGEPLLNYENIAWAVRRMLDKNAL 210

Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           + S RRITLST G    I R+ E ++GV LA+SLHA  ++ R  ++P   +Y +  +++A
Sbjct: 211 AMSPRRITLSTVGIPGGIRRLAEGDLGVKLALSLHAPDDETRRRIIPTAHRYSIAEIMEA 270

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
            R Y   +   R+T EY ML+ +ND    A  L +ILKG+ A +NLIPFNPW G     S
Sbjct: 271 VRAYFDRTKR-RVTIEYTMLRDVNDREEQARELARILKGLVAHVNLIPFNPWEGAPVAGS 329

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            +K I  F+  ++R G    +R  RG+D+ AACGQL 
Sbjct: 330 GKKRIQRFAAVLEREGVPVTVRWSRGVDVGAACGQLA 366


>gi|301162076|emb|CBW21620.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 344

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 194/367 (52%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+     +G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MPKYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L   + +     VDE  S DGT K+L +           +E VYIP++ R TLCVSSQVG
Sbjct: 57  LKGEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    +LTA +IL Q+                          K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTASLTANQILNQIAALPERD-------------------KLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L I + S G  +S +RITLS+ G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R+ L+P  R + ++ ++D  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPFPSQRSELMPAERAFSIKEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLIYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +  + + +F + +   G  + IR  RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGAGMEAMTSFRDYLTSHGLFTTIRASRGEDIFAACG 331

Query: 364 QLKSLSK 370
            L +  +
Sbjct: 332 MLSTAKQ 338


>gi|237727504|ref|ZP_04557985.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           D4]
 gi|229434360|gb|EEO44437.1| ribosomal RNA large subunit methyltransferase N [Bacteroides dorei
           5_1_36/D4]
          Length = 349

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 192/370 (51%), Gaps = 29/370 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G   +E+++ +  +G+P    +    QI  W+Y + +     M+++S + R  L
Sbjct: 4   PKTALLGRTLDEIQQIVRNLGMP----KFAAKQITSWLYDKKVETIDEMTNLSLKHRETL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + + +     V+E  S DGT K+L R PA        IE VYIP++ R TLCVSSQVGC
Sbjct: 60  KEGYEVGASAPVEEMRSVDGTVKYLFRTPAHNF-----IEAVYIPDEDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG Q    NL+A +IL Q+                          K++N+V 
Sbjct: 115 KMNCKFCMTGKQGFTANLSAHQILNQIYSI-------------------PEREKLTNLVF 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEP  N D V K L I +   G  +S +RIT+S+ G    + R   E    LAIS+H
Sbjct: 156 MGMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
                 R  L+P  + + +  +ID   +Y   S  RR++FEY++ KG+NDS   A  ++K
Sbjct: 216 TPIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNDSLIYAKEIVK 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+GI  ++NLI F+  P  +    D + +V F + + + G  + IR  RG DI AACG 
Sbjct: 275 LLRGIECRVNLIRFHAIPNVDLEGVDMETMVAFRDYLTQHGVFATIRASRGEDIFAACGM 334

Query: 365 LKSLSKRIPK 374
           L +  ++  K
Sbjct: 335 LSTAKQQKEK 344


>gi|57504577|ref|ZP_00370689.1| radical SAM enzyme, Cfr family [Campylobacter coli RM2228]
 gi|57019472|gb|EAL56166.1| radical SAM enzyme, Cfr family [Campylobacter coli RM2228]
          Length = 356

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 141/380 (37%), Positives = 205/380 (53%), Gaps = 42/380 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++  + EELEE +  +         R  QI++WIY +   +F  MS + +++R  L Q
Sbjct: 5   INILDFLPEELEEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
            +     + V  + S DG+ K+L           + IE+V +P K              R
Sbjct: 57  TYHFSPLKCVKNEQSKDGSIKYLFEL-----IDGLRIESVLLPMKEEQFDEEGKRISHTR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            ++CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +                  
Sbjct: 112 YSICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  NIV MGMGEPL N  NV K++ I S + GL+ S RR T+STSG    I  +GE
Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGE 217

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV+++LR  L+PIN+ Y +  ++DA R +P +   +R+ FEY+++ GI
Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVRAFP-IDQRKRVMFEYLLIDGI 276

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR 
Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRE 336

Query: 353 PRGLDILAACGQLKSLSKRI 372
            +GLDI AACGQLK  +K +
Sbjct: 337 SKGLDISAACGQLKERAKEL 356


>gi|225010483|ref|ZP_03700954.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-3C]
 gi|225005312|gb|EEG43263.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-3C]
          Length = 353

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 196/365 (53%), Gaps = 24/365 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +  + +E L    +  G        R +Q+++W++ +G   F+ M++IS+E R  L 
Sbjct: 7   KKDIRALDKEALRTFFVTQGQSA----FRGNQVYEWLWQKGAHSFESMTNISKETRAFLE 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HF I +  +   + S DGT K  +R     +     +E+V IP K+R T CVSSQVGCS
Sbjct: 63  THFVINHIRVDQMQRSNDGTIKNAVRLHDNLV-----VESVLIPTKTRTTACVSSQVGCS 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC T   K +RNL  +EI  QV+              I+        R +SNIV M
Sbjct: 118 LDCKFCATSRLKRMRNLQPDEIYDQVVA-------------IDQQSRLYFNRPLSNIVFM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N++NV K++   +D  GL+ S +RI +STSG    I ++ E+ +   LA+SLH
Sbjct: 165 GMGEPLMNYNNVLKAIEKITDPEGLAMSPKRIIVSTSGVPKMIRKMAEDGVKFKLAVSLH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  + +R  ++P N  +PL  L +A + +   +   RIT+EYV+ KGIND+      L++
Sbjct: 225 SAIDSVRTTIMPFNETFPLAQLREALQFWYEKT-KSRITYEYVVWKGINDNKAAIDALVE 283

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             K  PAK+NLI +NP     +  + Q  I  +   ++R   +  +R  RG DI AACGQ
Sbjct: 284 FCKFAPAKVNLIEYNPIDDGMFSQASQAAIDAYVNTLERHNITCTVRRSRGKDIDAACGQ 343

Query: 365 LKSLS 369
           L +  
Sbjct: 344 LANKQ 348


>gi|307722066|ref|YP_003893206.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306980159|gb|ADN10194.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 364

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 208/379 (54%), Gaps = 42/379 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+SL+   ++EL E +            R  QI+ W+Y +  +DF  M +I + ++  L+
Sbjct: 5   KQSLLDFTQKELTELVK--------PSFRAKQIYGWMYHQYAQDFDAMKNIPKAMKEELS 56

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------------- 112
           Q + +   +IV ++ S DGT K+L             +E V++  K              
Sbjct: 57  QKYIVNPLKIVRKEESSDGTIKYLFELQD-----GKTVEAVWLKMKDAQIDENGEIIQEA 111

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           + T+CVS+QVGC + CSFC T      R+L+A EI+ QV+  +                 
Sbjct: 112 KYTICVSTQVGCKVGCSFCLTAKGGFTRDLSAGEIVAQVVNLKRDNAH------------ 159

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
                +  NIV MGMGEPL N +N+ K++ I  +  GL+ S +R T+STSG    I ++G
Sbjct: 160 --KHNRKINIVYMGMGEPLDNLENLAKAIEIFKEEEGLAISGKRQTVSTSGLSNKIDKLG 217

Query: 233 E-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           + ++GV +AISLHAV ++LR  L+P+N+ + +  +I+A + +P +   +R+ FEY+++K 
Sbjct: 218 KMDLGVHIAISLHAVDDELRTELIPMNKAHNINSIIEAVKRFP-IDTRKRVMFEYLVIKN 276

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
            ND    A  L+K+L GI AK+NLI FNP+PG  Y    ++D+V F E +   G  S IR
Sbjct: 277 KNDDLGSAKKLVKLLSGIKAKVNLIYFNPYPGTPYERPSREDMVKFQEYLINHGLLSTIR 336

Query: 352 TPRGLDILAACGQLKSLSK 370
             +G+DI AACGQLK  ++
Sbjct: 337 DSKGIDISAACGQLKEKNQ 355


>gi|171909569|ref|ZP_02925039.1| YloN [Verrucomicrobium spinosum DSM 4136]
          Length = 390

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 193/373 (51%), Gaps = 36/373 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            SL+G+   EL   L ++G        R  Q+ +W++ + +  F  MS++S+ ++  L  
Sbjct: 24  PSLLGLQTAELGAILTELG----EKPYRVKQVQEWVFQKRVESFDAMSNLSKPLQEALAT 79

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--------EKSRGTLCV 118
             ++        + S D TRK+L +           IETV IP           R TLCV
Sbjct: 80  RLTLRSMTYARVEGSEDTTRKFLFKLYDGRF-----IETVLIPASPSLYGERSDRRTLCV 134

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC+  C FC +G     RNLTA EI+ Q+L    L G                  +
Sbjct: 135 SSQVGCAYDCKFCASGLAGFTRNLTAGEIVEQILQVEKLAG-----------------AR 177

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGV 237
           + N+V MGMGEPL N  NV +++ + +   G++   R +T+STSG  P I ++ +  + V
Sbjct: 178 VDNLVFMGMGEPLANLTNVMRAIEVLNAQWGVNIGARHMTVSTSGLAPQIHKLADFPLQV 237

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LAISLH  SN++RN ++P+NRKYPLE L  A   Y      +R+TFE++++ G+NDS  
Sbjct: 238 RLAISLHGASNEVRNQIMPVNRKYPLEELFPAL-EYWNSKKKQRLTFEFILIDGVNDSLE 296

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L +    + AK+NLIP+N   G ++    ++   TF + +      + +R  +G D
Sbjct: 297 QARLLGEHASRLDAKVNLIPYNTVEGLQWKRPSERRQDTFRDIVASHDVMTTLRREKGHD 356

Query: 358 ILAACGQLKSLSK 370
           I AACGQL+   +
Sbjct: 357 IAAACGQLRLKQE 369


>gi|281426132|ref|ZP_06257045.1| radical SAM enzyme, Cfr family [Prevotella oris F0302]
 gi|281399708|gb|EFB30539.1| radical SAM enzyme, Cfr family [Prevotella oris F0302]
          Length = 348

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 128/374 (34%), Positives = 200/374 (53%), Gaps = 30/374 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K++L+GM   EL+EA  ++G+P         QI KW+Y   ++    M++IS+  R  L 
Sbjct: 5   KKALLGMTLNELKEACKQLGMPA----FTGGQIAKWLYTHHVKHIDEMTNISKTNRAKLE 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + ++I   E ++ + S DGT K+L             +ETVYIPE  R TLCVS QVGC 
Sbjct: 61  EAYTIGCAEALEAQHSKDGTIKYLF-----PTASGKFVETVYIPENDRATLCVSCQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +LT  +IL Q+     +                    K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLTTCDILNQIYSLPEVD-------------------KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DN+ ++  I +   G ++S +RIT+S+ G    + R  EE    +AISLH+
Sbjct: 157 GQGEPMDNLDNILRTTEILTADYGWAWSPKRITVSSVGVKNKLKRFIEESDCHVAISLHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              + R  L+P  +   +  +++  R+Y   S+ RR++FEY++  G+NDS   A  L+++
Sbjct: 217 PIAEQRAELMPAQKGMSIAEIVELLRNY-DFSHQRRLSFEYIVFGGVNDSMTHARELVRL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+  +INLI F+  P      +D+K +    + +   G  + IR  RG DI AACG L
Sbjct: 276 LKGLDCRINLIRFHQIPDVPLHGADEKRMEELRDYLTSHGIFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSKRIPKVPRQE 379
            S SK+I ++  ++
Sbjct: 336 -STSKKIGEIRHEQ 348


>gi|150005131|ref|YP_001299875.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
           vulgatus ATCC 8482]
 gi|254883266|ref|ZP_05255976.1| 23S rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|294778942|ref|ZP_06744358.1| radical SAM enzyme, Cfr family [Bacteroides vulgatus PC510]
 gi|319642641|ref|ZP_07997287.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_40A]
 gi|205829665|sp|A6L3I9|RLMN_BACV8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|149933555|gb|ABR40253.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|254836059|gb|EET16368.1| 23S rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|294447251|gb|EFG15835.1| radical SAM enzyme, Cfr family [Bacteroides vulgatus PC510]
 gi|317385729|gb|EFV66662.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_40A]
          Length = 349

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 192/370 (51%), Gaps = 29/370 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G   +E+++ +  +G+P    +    QI  W+Y + +     M+++S + R  L
Sbjct: 4   PKTALLGRTLDEIQQIVRNLGMP----KFAAKQITSWLYDKKVETIDEMTNLSLKHREAL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + + +     V+E  S DGT K+L R PA        IE VYIP++ R TLCVSSQVGC
Sbjct: 60  KEGYEVGASAPVEEMRSVDGTVKYLFRTPAHNF-----IEAVYIPDEDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG Q    NL+A +IL Q+                          K++N+V 
Sbjct: 115 KMNCKFCMTGKQGFTANLSAHQILNQIYSI-------------------PEREKLTNLVF 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEP  N D V K L I +   G  +S +RIT+S+ G    + R   E    LAIS+H
Sbjct: 156 MGMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
                 R  L+P  + + +  +ID   +Y   S  RR++FEY++ KG+NDS   A  ++K
Sbjct: 216 TPIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNDSLIYAKEIVK 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+GI  ++NLI F+  P  +    D + +V F + + + G  + IR  RG DI AACG 
Sbjct: 275 LLRGIECRVNLIRFHAIPNVDLEGVDMETMVAFRDYLTQHGVFATIRASRGEDIFAACGM 334

Query: 365 LKSLSKRIPK 374
           L +  ++  K
Sbjct: 335 LSTAKQQKEK 344


>gi|237711138|ref|ZP_04541619.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|265750725|ref|ZP_06086788.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_33FAA]
 gi|229454982|gb|EEO60703.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263237621|gb|EEZ23071.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_33FAA]
          Length = 349

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/370 (34%), Positives = 192/370 (51%), Gaps = 29/370 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G   +E+++ +  +G+P    +    QI  W+Y + +     M+++S + R  L
Sbjct: 4   PKTALLGRTLDEIQQIVRNLGMP----KFAAKQIASWLYDKKVETIDEMTNLSLKHREAL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + + +     V+E  S DGT K+L R P R       IE VYIP++ R TLCVSSQVGC
Sbjct: 60  KEGYEVGASAPVEEMRSVDGTVKYLFRTPTRNF-----IEAVYIPDEDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG Q    NLTA +IL Q+                          K++N+V 
Sbjct: 115 KMNCKFCMTGKQGFTANLTANQILNQIYSI-------------------PEREKLTNLVF 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEP  N D V K L I +   G  +S +RIT+S+ G    + R   E    LAIS+H
Sbjct: 156 MGMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
                 R  L+P  + + +  +ID   +Y   S  RR++FEY++ KG+NDS   A  ++K
Sbjct: 216 TPIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNDSLIYAKEIVK 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+GI  ++NLI F+  P  +    D + + TF + + + G  + IR  RG DI AACG 
Sbjct: 275 LLRGIECRVNLIRFHAIPDVDLEGVDMEAMTTFRDYLTQHGVFATIRASRGEDIFAACGM 334

Query: 365 LKSLSKRIPK 374
           L +  ++  K
Sbjct: 335 LSTAKQQKEK 344


>gi|315919828|ref|ZP_07916068.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693703|gb|EFS30538.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 344

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/367 (35%), Positives = 199/367 (54%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MSKYPLLGMTLVELQSLAKRLGMPG----FTAKQIVSWLYEKKVASIDEMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     VDE  S DGT K+L +     +G    +E+VYIP+  R TLCVSSQVG
Sbjct: 57  LKQNYEVGAAAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                          K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI-------------------HSLPERDKLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L + + + G ++S +RITLST G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALELLTANYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R+ L+P  R Y +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPLTAQRSELMPAERAYSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +D   +  F + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKSLSK 370
            L +  +
Sbjct: 332 MLSTAKQ 338


>gi|60680539|ref|YP_210683.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
           fragilis NCTC 9343]
 gi|253563593|ref|ZP_04841050.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           3_2_5]
 gi|81316392|sp|Q5LGK5|RLMN_BACFN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|60491973|emb|CAH06734.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|251947369|gb|EES87651.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           3_2_5]
          Length = 344

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 194/367 (52%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+     +G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MPKYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L   + +     VDE  S DGT K+L +           +E VYIP++ R TLCVSSQVG
Sbjct: 57  LKGEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    +LTA +IL Q+                          K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTASLTANQILNQIAALPERD-------------------KLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L I + S G  +S +RITLS+ G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R+ L+P  R + ++ ++D  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPFPSQRSELMPAERAFSIKEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLIYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +  + + +F + +   G  + IR  RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGAGMETMTSFRDYLTSHGLFTTIRASRGEDIFAACG 331

Query: 364 QLKSLSK 370
            L +  +
Sbjct: 332 MLSTAKQ 338


>gi|15644462|ref|NP_229514.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
           maritima MSB8]
 gi|81553682|sp|Q9X240|RLMN_THEMA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|4982292|gb|AAD36781.1|AE001811_1 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 343

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/369 (35%), Positives = 203/369 (55%), Gaps = 30/369 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+ +  EEL   +  +G+     R R  QI  W++ + + +F  M+++S++ R LL +
Sbjct: 2   KNLLDLSYEELVTEITNLGLE----RYRADQILDWVFDKKVNNFDEMTNLSKKHRALLKE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           HFSI + +++D+K+S  DGT K+L             IE+V +    R T C+S+QVGC 
Sbjct: 58  HFSISFLKLLDKKVSRIDGTTKFLWELED-----GNTIESVMLFHPDRITACISTQVGCP 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG    VRNLT  EI+ Q+L                        +KI N+V M
Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQILSMEK-----------------EEKKKIGNVVYM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N++N  KS+ I +     +   RRIT+ST G    I ++ EE + V LA+SLH
Sbjct: 156 GMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N  R+ LVP+N+KY +E +++A + Y   +   R+T EYV+++GIND   DA  L +
Sbjct: 216 APTNFKRDQLVPLNKKYSIEEILNAVKIYQRKT-GNRVTIEYVLIRGINDEISDAKKLAE 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           IL+ +   +NLIP NP          ++ ++TF   +  +G  + IR  +G DI AACGQ
Sbjct: 275 ILRNMKVFVNLIPVNPTVE-GLRRPSRERLLTFKRILLENGIEAEIRREKGTDIEAACGQ 333

Query: 365 LKSLSKRIP 373
           L+    +  
Sbjct: 334 LRLKRIKSR 342


>gi|257065510|ref|YP_003145182.1| radical SAM enzyme, Cfr family [Slackia heliotrinireducens DSM
           20476]
 gi|256793163|gb|ACV23833.1| radical SAM enzyme, Cfr family [Slackia heliotrinireducens DSM
           20476]
          Length = 344

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 117/364 (32%), Positives = 184/364 (50%), Gaps = 28/364 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           +  + ++++ + L ++  P      R  Q+ +WIY RG   +  M+++S+ +R  L++  
Sbjct: 8   IKALSQQQIVDLLAEMEQPA----FRAKQLVQWIYGRGASTYDEMTNLSKALRQELSEKA 63

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            +   EI+D+++S DGTRK++++F          +E V +P + R T+C S+QVGC + C
Sbjct: 64  PLRTAEIIDKQVSKDGTRKYVVQFYD-----GAAVEMVAMPYEDRMTVCFSTQVGCPMAC 118

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
           SFC TG +   RNL   E+L Q+++A                    + R++SN+V MG G
Sbjct: 119 SFCATGKEGFTRNLLPGEMLDQIIIAEK-----------------DMNRRVSNLVGMGQG 161

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EPL N+DNV  +L  A+   G     R IT+ST G +  I     E     LA+SLH+  
Sbjct: 162 EPLLNYDNVMAALRFANSKDGRGIGARHITISTCGILKGIDDFSREKEQFTLAVSLHSAI 221

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
            + R+ L+P     PL  L  A + Y   +   R T EY+M+ G ND       L+    
Sbjct: 222 QETRDELMPKVANQPLFRLKSALQTYVKRTGR-RATLEYIMINGYNDDDDHLDALVDFCD 280

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
            +   +NLIP N   G  +  S +K    F   +  SG  + +R  RG DI  ACGQLK+
Sbjct: 281 DLLCHVNLIPLNNIEGSPWQPSSKKQTQKFLNVLNASGTEATLRDSRGADIDGACGQLKN 340

Query: 368 LSKR 371
             K+
Sbjct: 341 KRKQ 344


>gi|124007524|ref|ZP_01692229.1| radical SAM enzyme, Cfr family [Microscilla marina ATCC 23134]
 gi|123987007|gb|EAY26763.1| radical SAM enzyme, Cfr family [Microscilla marina ATCC 23134]
          Length = 350

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 194/368 (52%), Gaps = 24/368 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+ +      ++   L   G        R  QI+ W++ +    F+ M+++S ++R +L
Sbjct: 6   QKQDIRKFSVADISSFLASKG----EKAFRAKQIYAWLWQKSANSFEEMTNLSLKLREML 61

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             HF I    +  ++IS D T K   +     I     IE V IP K R T CVSSQVGC
Sbjct: 62  QAHFDITALTVDQQQISNDQTIKSTFKLYDNHI-----IEGVLIPAKDRMTACVSSQVGC 116

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SLTC FC TG     RNL   EI  QV+       +             +  + ++NIV 
Sbjct: 117 SLTCKFCATGYMSRKRNLEPGEIYDQVVAIARQAEE-------------NYEQPLTNIVY 163

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MGMGEPL N+ NV KS+   +   GL+ S +RIT+ST+G    I ++G+ E+   LA+SL
Sbjct: 164 MGMGEPLLNYANVLKSVEHITSPEGLNMSPKRITISTAGIAKMIRKLGDDEVKFNLALSL 223

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +++ RN ++PIN    L  L DA ++Y   +   R+T+EY++    NDS +DA  L 
Sbjct: 224 HAANDEKRNEIMPINESNTLVALRDALKYYFQKT-KNRVTYEYIVFHNFNDSLKDAEELY 282

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +  + +P K+N+I +NP    +++ + +  +  F++ ++  G    +R  RG DI AACG
Sbjct: 283 RFTRHLPCKVNIIEYNPIAEADFVNTKEDKLAKFAKYLEGKGVIVNVRRSRGKDIDAACG 342

Query: 364 QLKSLSKR 371
           QL    ++
Sbjct: 343 QLAIKEEK 350


>gi|237755450|ref|ZP_04584074.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692382|gb|EEP61366.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 354

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 138/370 (37%), Positives = 211/370 (57%), Gaps = 29/370 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L     +ELE  +++ G      + R  QI KW+Y +    +  M+D+S+++R+ L 
Sbjct: 2   KVNLKNFNLKELENFVVEKGW----QKFRAKQIAKWLYKKKASSYDEMTDLSKDIRNYLK 57

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++      E+V  + S  DG+ K+L +           IETV I EK+  TLCVS+QVGC
Sbjct: 58  ENTEFNALELVMYQQSKIDGSIKFLWKLKD-----GNTIETVLINEKNHKTLCVSTQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC+T    L+RNL   EI+ Q +  +  LGD                 +ISNIV 
Sbjct: 113 AVGCKFCFTTKDGLIRNLETAEIVEQYINVQRFLGD-------------EEENRISNIVY 159

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLAI 241
           MGMGEPL N++NVKKS+ I +    +  S R+IT+S+SG +  I R+ E+     V LA+
Sbjct: 160 MGMGEPLANYENVKKSVQIFTHPDMVGLSHRKITISSSGILHQIKRMYEDKEFPEVKLAV 219

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SL+A + D R  L+PI++   L+ L+D  R  P L    RIT EYV++KG+NDS +DA  
Sbjct: 220 SLNASNQDQRAFLMPISQTNTLQDLMDLLRSIP-LKPGWRITLEYVLIKGVNDSEQDAKR 278

Query: 302 LIKILKGIPA--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L+ +LK      K+NLIPFNP+P  E+   +++ ++ F + +  +  ++ IR  +G DI 
Sbjct: 279 LVNLLKKDKHRFKVNLIPFNPYPSAEFERPEEERVLKFEKILWDNNIATFIRWSKGRDID 338

Query: 360 AACGQLKSLS 369
           AACGQL+  +
Sbjct: 339 AACGQLRKKA 348


>gi|86152381|ref|ZP_01070591.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315125097|ref|YP_004067101.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85840678|gb|EAQ57930.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018819|gb|ADT66912.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 356

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 139/378 (36%), Positives = 204/378 (53%), Gaps = 42/378 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++  + EEL E +  +         R  QI++WIY +   +F  MS + +++R  L Q
Sbjct: 5   VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
           +F     + V  + S DG+ K+L           + +E+V +P K              R
Sbjct: 57  NFHFSPVKCVKNEQSKDGSIKYLFEL-----IDGLRVESVLLPMKEEKIDAEGKRISHAR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +                  
Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  NIV MGMGEPL N  NV K++ I + + GL+ S RR T+STSG    I  +G+
Sbjct: 159 -PYERRINIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQ 217

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV+++LR  L+PIN+ Y +  ++DA R +P +   +R+ FEY+++ GI
Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR 
Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRE 336

Query: 353 PRGLDILAACGQLKSLSK 370
            +GLDI AACGQLK  +K
Sbjct: 337 SKGLDISAACGQLKERAK 354


>gi|302522180|ref|ZP_07274522.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           SPB78]
 gi|302431075|gb|EFL02891.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           SPB78]
          Length = 372

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 182/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA+  IG        R  Q+ +  + R  +D    +DI    R  L +
Sbjct: 24  RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE 79

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   ISCD   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 80  ALLPELMSVV-RHISCDDDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 133

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++     L D           IP    ++SNIV 
Sbjct: 134 GMNCPFCATGQAGLDRNLSTAEIVHQIVEGMRALRD---------GEIPGGPARLSNIVF 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP I R  +E     LA+
Sbjct: 185 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAV 244

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   R++ EY +++ IND       
Sbjct: 245 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RVSIEYALIRDINDQAWRGDL 303

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LK     +NLIP NP PG ++  S  +D   F + I   G    +R  RG +I  A
Sbjct: 304 LGRLLKNKRVHVNLIPLNPTPGSKWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGA 363

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 364 CGQLAAAER 372


>gi|288573974|ref|ZP_06392331.1| radical SAM enzyme, Cfr family [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569715|gb|EFC91272.1| radical SAM enzyme, Cfr family [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 341

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/360 (36%), Positives = 187/360 (51%), Gaps = 29/360 (8%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           +    +E    + + G P      R  Q+ +WIY + + D   M+++S+++R  L  H  
Sbjct: 8   LEFNYDEWRNFVDEAGEPS----YRADQLCQWIYGKKVFDIHRMTNLSKDLRSKLEGHLY 63

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           +  P  VD + S DGT K+L RF         E+E+V +   +  T C+S+QVGC L C 
Sbjct: 64  VQPPFAVDVQKSSDGTVKFLWRFLD-----GQEVESVLMDHGNHHTACLSTQVGCPLRCD 118

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG Q  VRNLT  EI+   L   S LG                   I NIV MGMGE
Sbjct: 119 FCATGRQGFVRNLTVGEIVGHFLAMESWLGQD-----------------IKNIVFMGMGE 161

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           PL N++NVKK++ I +         RRIT+STSG VP I  + +  + V L+ SLHA ++
Sbjct: 162 PLLNWENVKKAIEILNHPKMRGMGIRRITISTSGVVPGILALADSGLDVRLSFSLHAPND 221

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
            +R+ L+P+N +YPL  +++A + +   +   RIT EYV+LK IND P  A  +  +L  
Sbjct: 222 QIRSKLMPVNERYPLGQVVEALQEFQKKT-GNRITVEYVLLKRINDEPSMAYEIAALLSD 280

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +   INLIP+NP     Y       I  F   ++  G    +R  +G DI AACGQL+  
Sbjct: 281 LDVYINLIPYNPVVER-YGRPSASRINPFMATLRELGLEVELRKEKGTDIDAACGQLRGK 339


>gi|312892339|ref|ZP_07751834.1| 23S rRNA m(2)A-2503 methyltransferase [Mucilaginibacter paludis DSM
           18603]
 gi|311295123|gb|EFQ72297.1| 23S rRNA m(2)A-2503 methyltransferase [Mucilaginibacter paludis DSM
           18603]
          Length = 350

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 196/367 (53%), Gaps = 24/367 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K  +  +  E L++  L++G        R  Q+++W++ +    F  MS++S+E+R  L
Sbjct: 4   NKTDIRSLSYEALQKLFLELG----EKSFRAKQVYEWLWKKSCFSFNEMSNLSKELRQKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + F+I   ++   + S D T K         +     IE V IP   R T CVSSQVGC
Sbjct: 60  EEQFTINNVKVNTSQFSADKTIKNSFILHDGHL-----IEGVLIPADDRMTACVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SLTC FC TG  +  RNL  +EI  QV+L             I+     +    ++NIV 
Sbjct: 115 SLTCKFCATGYMERKRNLNPDEIYDQVVL-------------IDQQARQNYDHHLTNIVY 161

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N+ NV KS+   +   GL+ + +RIT+ST+G    I ++G++ +   LA+SL
Sbjct: 162 MGMGEPLLNYANVLKSIERITAEDGLNMAAKRITVSTAGIAKMIKKLGDDQVKFNLALSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++  RN ++PIN +  L+ L +A ++Y   +    +T+EY++    ND  +DA+ L 
Sbjct: 222 HAANDAKRNEIMPINEQNSLKALAEALKYYYAKT-KNPVTYEYIVFNDFNDEIQDAVELA 280

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
              K IP K+N+I +NP     Y  +D   I  F++ +++   ++ +R  RG DI AACG
Sbjct: 281 AFCKHIPCKVNIIEYNPISFASYTNADVDKIEAFADYLRKQDINTNVRRSRGKDIDAACG 340

Query: 364 QLKSLSK 370
           QL    K
Sbjct: 341 QLAIKEK 347


>gi|330996801|ref|ZP_08320673.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT
           11841]
 gi|329572523|gb|EGG54174.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT
           11841]
          Length = 348

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 198/375 (52%), Gaps = 29/375 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+GM   EL+    +IG+P         Q+ +W+Y + +     M++IS + R LL
Sbjct: 3   DKIALLGMTLSELKSVAGEIGMPS----FAARQMAEWLYGKKVASIDEMTNISAKNRCLL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N+ +++     VD + S DGT K+L R  A        +ETVYIP+  R TLCVSSQVGC
Sbjct: 59  NERYTVGCLGPVDCQRSADGTVKYLYRTAAGGY-----VETVYIPDGDRATLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG Q     LTA +IL Q+                           ++N+V 
Sbjct: 114 RMNCRFCMTGKQGFSGQLTAADILNQLYSLPERD-------------------TLTNVVF 154

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MG GEPL N DNV ++  I +   G ++S +RIT+ST G    + R  +E    LA+SLH
Sbjct: 155 MGQGEPLDNLDNVLRATEILTADYGYAWSPKRITVSTVGLRKGLKRFLDESECHLAVSLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
               D R  L+P    Y L+ ++   R Y   ++ RR++FEY M +G+ND+   A  L++
Sbjct: 215 NPFADQRARLMPAENSYGLQEIVALLREY-DFTHQRRLSFEYTMFEGVNDTLAHAKELLR 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L G+  ++NLI F+P PG +   + ++ ++ F + +   G  S IR  RG DI AACG 
Sbjct: 274 LLGGVECRMNLIRFHPVPGVDLKGTSEEGMLRFRDYLTGHGLFSTIRASRGQDIFAACGL 333

Query: 365 LKSLSKRIPKVPRQE 379
           L +  ++  ++ + E
Sbjct: 334 LSTAKQQGVELKKTE 348


>gi|255007877|ref|ZP_05280003.1| hypothetical protein Bfra3_01983 [Bacteroides fragilis 3_1_12]
 gi|313145585|ref|ZP_07807778.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134352|gb|EFR51712.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 344

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/367 (35%), Positives = 196/367 (53%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+     +G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MPKYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L   + +     VD   S DGT K+L R     +G    +E VYIP++ R TLCVSSQVG
Sbjct: 57  LKGEYDLGVVAPVDAMHSIDGTVKYLYR-----VGENHFVEAVYIPDEDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    +LTA +IL Q+                          K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTASLTANQILNQIAALPERD-------------------KLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L I + S G  +S +RITLS+ G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R+ L+P  R + ++ ++D  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPFPSQRSELMPAERAFSIKEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLIYAKELV 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +D + ++ F + +   G  + IR  RG DI AACG
Sbjct: 272 KLLRGLDCRMNLIRFHAIPGVDLEGADMETMMAFRDYLTSHGLFTTIRASRGEDIFAACG 331

Query: 364 QLKSLSK 370
            L +  +
Sbjct: 332 MLSTAKQ 338


>gi|86150562|ref|ZP_01068786.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86154131|ref|ZP_01072330.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88597741|ref|ZP_01100974.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|85839014|gb|EAQ56279.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85842371|gb|EAQ59587.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88190045|gb|EAQ94021.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|284926904|gb|ADC29256.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315929674|gb|EFV08851.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 356

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 139/378 (36%), Positives = 204/378 (53%), Gaps = 42/378 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++  + EEL E +  +         R  QI++WIY +   +F  MS + +++R  L Q
Sbjct: 5   VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
           +F     + V  + S DG+ K+L           + +E+V +P K              R
Sbjct: 57  NFHFSPVKCVKNEQSKDGSIKYLFEL-----IDGLRVESVLLPMKEEKIDAEGKRISHAR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +                  
Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  NIV MGMGEPL N  NV K++ I + + GL+ S RR T+STSG    I  +G+
Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQ 217

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV+++LR  L+PIN+ Y +  ++DA R +P +   +R+ FEY+++ GI
Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR 
Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRE 336

Query: 353 PRGLDILAACGQLKSLSK 370
            +GLDI AACGQLK  +K
Sbjct: 337 SKGLDISAACGQLKERAK 354


>gi|332880555|ref|ZP_08448229.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681543|gb|EGJ54466.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 344

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 195/367 (53%), Gaps = 29/367 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+GM   EL+    +IG+P         Q+ +W+Y + +     M++IS + R LL
Sbjct: 3   DKIALLGMTLAELKAVAGEIGMPS----FAARQMAEWLYGKKVASIDEMTNISAKNRRLL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N+ +++     VD + S DGT K+L R  A        +ETVYIP+  R TLCVSSQVGC
Sbjct: 59  NERYTVGCAAPVDGQRSADGTVKYLYRTAAGGY-----VETVYIPDGDRATLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG Q     LTA +IL Q+                           ++N+V 
Sbjct: 114 RMNCRFCMTGKQGFSGQLTAADILNQLYSLPERD-------------------TLTNVVF 154

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MG GEPL N DNV ++  I +   G ++S +RIT+ST G    + R  +E    LA+SLH
Sbjct: 155 MGQGEPLDNLDNVLRATEILTADYGYAWSPKRITVSTVGLRKGLKRFLDESECHLAVSLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
               D R +L+P    Y L  ++   R Y   ++ RR++FEY M +G+ND+P  A  L++
Sbjct: 215 NPFADQRALLMPAENSYGLREIVALLREY-DFTHQRRLSFEYTMFEGVNDTPAHAKELLR 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L G+  ++NLI F+P PG +   + ++ ++ F + +   G  S IR  RG DI AACG 
Sbjct: 274 LLDGLECRMNLIRFHPVPGVDLKGTSEEGMLRFRDYLTGHGLFSTIRASRGQDIFAACGL 333

Query: 365 LKSLSKR 371
           L +  ++
Sbjct: 334 LSTAKQQ 340


>gi|218129787|ref|ZP_03458591.1| hypothetical protein BACEGG_01366 [Bacteroides eggerthii DSM 20697]
 gi|217987897|gb|EEC54222.1| hypothetical protein BACEGG_01366 [Bacteroides eggerthii DSM 20697]
          Length = 345

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 194/371 (52%), Gaps = 29/371 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+G+   EL+  +  +G+P         QI  W+Y + +     M+++S + R LL 
Sbjct: 2   KQPLLGLTLTELQAVVKNLGMPG----FAAKQIASWLYGKKVASIDEMTNLSLKHRDLLK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             + +     VD   S DGT K+L R     +G    +E VYIPE+ R TLCVSSQVGC 
Sbjct: 58  DIYEVGGEAPVDAMRSVDGTVKYLYR-----VGEGHYVEAVYIPEEDRATLCVSSQVGCK 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLTA +I+ Q+                          K++N+VMM
Sbjct: 113 MNCKFCMTGKQGFTGNLTAGQIINQI-------------------NSLPERDKLTNVVMM 153

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V K+L + + S G  +S +R+TLS+ G    + R  EE    LAISLH+
Sbjct: 154 GMGEPLDNLDEVLKALEVMTASYGYGWSPKRVTLSSVGLRKGLQRFVEESDCHLAISLHS 213

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  +++  R+Y   S  RR++FEY++ KG+NDS   A  L+K+
Sbjct: 214 PVPQQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  +INLI F+  PG +   +D + +    + +   G  + IR  RG DI AACG L
Sbjct: 273 LRGLDCRINLIRFHAIPGVDLEGADMETMTALRDYLTSHGLFTTIRASRGEDIFAACGML 332

Query: 366 KSLSKRIPKVP 376
            +  +   K  
Sbjct: 333 STAKQEGNKEE 343


>gi|148270145|ref|YP_001244605.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
           petrophila RKU-1]
 gi|281412513|ref|YP_003346592.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10]
 gi|205829917|sp|A5ILF6|RLMN_THEP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|147735689|gb|ABQ47029.1| radical SAM enzyme, Cfr family [Thermotoga petrophila RKU-1]
 gi|281373616|gb|ADA67178.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10]
          Length = 343

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/371 (36%), Positives = 205/371 (55%), Gaps = 32/371 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+ +  EEL   +  +G+     R R  QI  WI+ + + +F  M+++S++ R LL +
Sbjct: 2   KNLLDLSYEELITEITNLGLE----RYRADQILDWIFNKKVNNFDEMTNLSKKHRALLKE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           HFSI + +++D+K+S  DGT K+L             IE+V +    R T C+S+QVGC 
Sbjct: 58  HFSIPFLKLLDKKVSRIDGTTKFLWELED-----GNTIESVMLFHPDRITACISTQVGCP 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG    VRNLT  EI+ Q+L                        +KI N+V M
Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQILSMEK-----------------EEKKKIGNVVYM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N++N  KS+   +     +   RRIT+ST G    I ++ EE + V LA+SLH
Sbjct: 156 GMGEPLLNYENTIKSIRTLNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +N  R+ LVP+N+KY +E +++A + Y   +   R+T EYV++KG+ND   DA  L +
Sbjct: 216 APTNFKRDQLVPLNKKYSIEEILNAVKIYQKKT-GNRVTIEYVLIKGMNDEISDAKKLAE 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ILK +   +NLIP NP    +     ++ ++TF   +  SG  + IR  +G DI AACGQ
Sbjct: 275 ILKNMKVFVNLIPVNPTVE-DLKKPSRERLLTFKRILLESGIEAEIRREKGADIEAACGQ 333

Query: 365 LKSLSKRIPKV 375
           L+   KRI   
Sbjct: 334 LR--LKRIKST 342


>gi|34556516|ref|NP_906331.1| ribosomal RNA large subunit methyltransferase N [Wolinella
           succinogenes DSM 1740]
 gi|81833710|sp|Q7MSW1|RLMN_WOLSU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|34482230|emb|CAE09231.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 359

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/375 (37%), Positives = 212/375 (56%), Gaps = 42/375 (11%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++     EEL+  L        H   R  Q++ W+Y R   +F+ M ++S+E+R  L Q 
Sbjct: 3   NIYDYTLEELKRRL--------HPPFRAKQLYHWLYHRYEEEFEKMHNLSKEIRQKLTQD 54

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVY-------------IPEKSRG 114
           +S    ++V E++S DG+RK+L +         +  E V              I E  + 
Sbjct: 55  YSATLTKVVREEVSEDGSRKYLFQTHD-----GLTYEAVLLKMKEKKEDEEGRIVEGEKY 109

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           T+CVSSQVGC + CSFC+T     VRNL+A EI+ Q++  + L    P            
Sbjct: 110 TICVSSQVGCKVGCSFCFTAKGGFVRNLSAGEIVYQIVALKRLNALAP------------ 157

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE- 233
              K  NIV MGMGEPL NF+N+ +++ I S+  GLS S +R T+STSG  P I ++G  
Sbjct: 158 --EKRVNIVYMGMGEPLDNFENLIQAIRILSELDGLSISTKRQTISTSGIAPKIEKLGAL 215

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
           ++GV LAISLHAV ++LR  L+P+N+ Y +  +I+A R +P + + +R+ FEY+++KG+N
Sbjct: 216 DLGVQLAISLHAVDDELRTRLIPMNKAYNIASIIEAVRRFP-IDSRKRVMFEYLVIKGVN 274

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D  + A  L+K+L GI +K+NLI FNP  G E+    +  +V F + +   G    IR  
Sbjct: 275 DDEKSAKTLLKLLNGIKSKVNLIYFNPHEGSEFERPLESKMVAFQKYLTDRGLLCTIRES 334

Query: 354 RGLDILAACGQLKSL 368
           +G+DI AACGQL+  
Sbjct: 335 KGIDISAACGQLREK 349


>gi|269797912|ref|YP_003311812.1| radical SAM enzyme, Cfr family [Veillonella parvula DSM 2008]
 gi|269094541|gb|ACZ24532.1| radical SAM enzyme, Cfr family [Veillonella parvula DSM 2008]
          Length = 348

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 200/368 (54%), Gaps = 30/368 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   EEL+       I     + R  Q++ +IY R I DF+ M+   +++R  LN + 
Sbjct: 4   LLGKSLEELQSIFKTHNI----QKFRAKQLFDYIYHRYIFDFEDMTQFPKDLRQWLNDNC 59

Query: 69  SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I  P ++ E I+ DG TRK L+    +       +E V + +    ++CVSSQVGC++ 
Sbjct: 60  VISLPTLITESIAPDGKTRKILVEMTDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +    L R+LT  EI+ QV++  +L  +                 +I ++V+MG 
Sbjct: 115 CVFCASTQGGLYRDLTVAEIIGQVVIFGALTKE-----------------EIHSVVVMGA 157

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N+DNV ++L +  D M  + S R++T+ST G+VPNI ++ +E + + LA+SLHA 
Sbjct: 158 GEPLQNYDNVLQALQLLHDPMICNISYRKMTISTCGWVPNIYKLADEALPITLALSLHAT 217

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N++R  ++P+  +Y L  ++DA ++Y   +  RR+TFEY+++  +N S  +A  L KI 
Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYN-TTQRRVTFEYILIDSVNASMDEAHALGKIC 276

Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           K  P   +NLIP N     E       ++ TF + +   G S  +R   G  I AACGQL
Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVSSYGVSVTVRKEMGDAIQAACGQL 336

Query: 366 KSLSKRIP 373
           K+   R  
Sbjct: 337 KAAHGRKK 344


>gi|288927891|ref|ZP_06421738.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330725|gb|EFC69309.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 351

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 29/365 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+G   +EL+   +  G+P         Q+  W+Y + +   + M++IS+  R  L 
Sbjct: 5   KIPLLGHTLDELKAIAIDNGLPA----FAGKQMAVWLYDKHVDTIEEMTNISKSNREKLA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q + I   + +D + S DGT K+L    +        +ETVYIP++ R TLCVS QVGC 
Sbjct: 61  QRYEIGAAKFIDAQYSKDGTIKYLFPTESGKF-----VETVYIPDRDRATLCVSCQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLTA++IL Q+                         +K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGNLTAKDILNQIYAL-------------------PERQKLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DNV K   I +   G ++S +RIT+S+ G    + R  +E    +AIS+H 
Sbjct: 157 GQGEPMDNLDNVLKVTQILTADYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              + R  ++P  +   +E +++  + Y   ++ RR++FEY+M  G+ND+P  A  L+K+
Sbjct: 217 PIPEQRASIMPAEKGLSIEEIVELLKQY-DFTHQRRLSFEYIMFGGLNDTPLHARQLVKL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++G+  ++NLI F+  P      SD+K + TF + +   G  + IR  RG DI AACG L
Sbjct: 276 VEGLDCRVNLIRFHQIPNVNLNNSDEKRMETFRDYLTNHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSK 370
            +  K
Sbjct: 336 STAKK 340


>gi|153951816|ref|YP_001398992.1| radical SAM protein [Campylobacter jejuni subsp. doylei 269.97]
 gi|205829694|sp|A7H662|RLMN_CAMJD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|152939262|gb|ABS44003.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 356

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 139/378 (36%), Positives = 205/378 (54%), Gaps = 42/378 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++  + EEL E +  +         R  QI++WIY +   +F  MS + +++R  L Q
Sbjct: 5   VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
           +F     + V  + S DG+ K+L           + +E+V +P K              R
Sbjct: 57  NFHFSPVKCVKNEQSKDGSIKYLFEL-----IDGLRVESVLLPMKEEKIDTEGKRISHAR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC  +CSFC T    L RNL+A EI+ Q+L  +                  
Sbjct: 112 YTICVSSQVGCKSSCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  NIV MGMGEPL N  NV K++ I + + GL+ S RR T+STSG    I  +G+
Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQ 217

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV+++LR  L+PIN+ Y +  ++DA R +P +   +R+ FEY+++ GI
Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR 
Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRE 336

Query: 353 PRGLDILAACGQLKSLSK 370
            +GLDI AACGQLK  +K
Sbjct: 337 SKGLDISAACGQLKERAK 354


>gi|167765103|ref|ZP_02437216.1| hypothetical protein BACSTE_03489 [Bacteroides stercoris ATCC
           43183]
 gi|167696731|gb|EDS13310.1| hypothetical protein BACSTE_03489 [Bacteroides stercoris ATCC
           43183]
 gi|290770009|gb|ADD61775.1| putative protein [uncultured organism]
          Length = 345

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 193/371 (52%), Gaps = 29/371 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+G+   EL+  +  +G+P         QI  W+Y + +     M+++S   R LL 
Sbjct: 2   KQPLLGLTLTELQTVVKNLGLPG----FAAKQIAAWLYDKKVASIDEMTNLSLRHRALLK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + + +     VD   S DGT K+L R      G    +E VYIP++ R TLCVSSQVGC 
Sbjct: 58  EIYEVGCEVPVDAMRSVDGTVKYLYR-----AGEGHYVEAVYIPDEDRATLCVSSQVGCK 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLTA +I+ Q+                          K++N+VMM
Sbjct: 113 MNCKFCMTGKQGFTANLTANQIINQI-------------------NSLPERDKLTNVVMM 153

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V K+L + + S G  +S +RITLS+ G    + R  EE    LA+SLH+
Sbjct: 154 GMGEPLDNLDEVLKALEVMTSSYGYGWSPKRITLSSVGLRKGLQRFIEESDCHLAVSLHS 213

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  ++D  R+Y   S  RR++FEY++ KG+NDS   A  L+K+
Sbjct: 214 PVPLQRRELMPAEKAFSITEIVDLLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  +INLI F+  PG     +D + +  F + +   G  + IR  RG DI AACG L
Sbjct: 273 LRGLDCRINLIRFHAIPGVNLEGADMETMTAFRDYLTSHGLFTTIRASRGEDIFAACGML 332

Query: 366 KSLSKRIPKVP 376
            +  +   K  
Sbjct: 333 STAKQEENKEE 343


>gi|313893380|ref|ZP_07826952.1| 23S rRNA m2A2503 methyltransferase [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442021|gb|EFR60441.1| 23S rRNA m2A2503 methyltransferase [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 348

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 199/368 (54%), Gaps = 30/368 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   EEL+       I     + R  Q+  +IY R + DFQ M+   +E+R  L+ + 
Sbjct: 4   LLGKSLEELQSIFKTHNI----QKFRAKQLIDYIYHRYVFDFQEMTQFPKELRQWLSDNC 59

Query: 69  SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I  P ++ E IS DG TRK LL    +       +E V + +    ++CVSSQVGC++ 
Sbjct: 60  VISLPTLITESISPDGKTRKILLEMTDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +    L R+LT  EI+ QV++  +L  +                 +I ++V+MG 
Sbjct: 115 CVFCASTQGGLYRDLTVAEIIGQVVIFGALTKE-----------------QIHSVVVMGA 157

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N+DNV ++L +  D +  + S R++T+ST G+VPNI ++ +E + + LA+SLHA 
Sbjct: 158 GEPLQNYDNVLQALQLLHDPVICNISYRKMTISTCGWVPNIYKLADEGLPITLALSLHAT 217

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N++R  ++P+  +Y L  ++DA ++Y   +  RRITFEY+++  +N S  +A  L +I 
Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYD-TTQRRITFEYILIDSVNASMEEAHALGQIC 276

Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           K  P   +NLIP N     E       ++ TF + +   G S  +R   G  I AACGQL
Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVGSYGVSVTVRKEMGDAIQAACGQL 336

Query: 366 KSLSKRIP 373
           K+   R  
Sbjct: 337 KAAHGRKK 344


>gi|149371549|ref|ZP_01890965.1| hypothetical protein SCB49_09100 [unidentified eubacterium SCB49]
 gi|149355176|gb|EDM43736.1| hypothetical protein SCB49_09100 [unidentified eubacterium SCB49]
          Length = 346

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 192/366 (52%), Gaps = 24/366 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+ +  + +EEL +  + +G        R +Q+++W++ +G   F+ M+++S E R  L
Sbjct: 4   EKKDIRALTKEELRDFFVALGDKA----FRGNQVYEWLWSKGAHTFEAMTNLSLETRSHL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +F I + ++   + S DGT K  ++     I     +E+V IP KSR T CVSSQVGC
Sbjct: 60  EANFVINHIKVDSIQRSNDGTIKNAVKLHDGLI-----VESVLIPTKSRTTACVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C FC T   K +RNL  +EI  QV+              I+          +SNIV 
Sbjct: 115 SLDCLFCATSRLKRMRNLNPDEIYDQVVA-------------IDKESRLYHNIPLSNIVY 161

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N+ NV  S+   +   GL  S +RI +STSG    I ++ ++ +   LA+SL
Sbjct: 162 MGMGEPLMNYKNVLASIEKITSPEGLGMSPKRIVVSTSGVPKMIKKMADDGVRFNLAVSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+   + R  ++P  + + L+ L DA  ++   +N   IT+EYV+ K IND   D   L+
Sbjct: 222 HSAIQETREEIMPFAKSFTLDDLRDALIYWYEKTNR-AITYEYVVWKDINDKKVDIDALV 280

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +    +P K+NLI +NP    ++  +    +  +   ++++     +R  RG DI AACG
Sbjct: 281 RFCAHVPCKVNLIEYNPIDDGKFQQAQDAAVDAYISSLEKARVPVTVRRSRGKDIDAACG 340

Query: 364 QLKSLS 369
           QL +  
Sbjct: 341 QLANKQ 346


>gi|328951573|ref|YP_004368908.1| Ribosomal RNA large subunit methyltransferase N [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451897|gb|AEB12798.1| Ribosomal RNA large subunit methyltransferase N [Marinithermus
           hydrothermalis DSM 14884]
          Length = 353

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 134/353 (37%), Positives = 187/353 (52%), Gaps = 21/353 (5%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
           +E    L            R  QI  W+Y  G+R+F  M+D+ + +R  L   + I    
Sbjct: 17  DERRPILEPEPEDLPGEGYRKRQIAHWLYAWGVREFDEMTDLPRALRAELAHTWRISEFS 76

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
           +V    S DG+ K+L            + E VY+P K R T+C+SS VGC   C+FC TG
Sbjct: 77  LVQAFPSADGSTKYLYTLHD-----GRQTEAVYMPYKDRRTICISSMVGCPAGCTFCATG 131

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
             +  RNLTA EIL Q+L A    G  P              R+I N+V+MGMGEPL N 
Sbjct: 132 QMRFGRNLTAPEILDQLLAAAYHQGISP--------------REIRNVVLMGMGEPLLNL 177

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
            NV K++        L+ S RRITLST G    I R+ EE +GV LA+SLHA  ++ R  
Sbjct: 178 TNVLKAVRRMIHKQALAMSPRRITLSTVGIPRGIYRLAEEDVGVKLALSLHAPDDETRRR 237

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           ++P   +Y +E ++DA RHY   +   R+T EY +L+G+ND    A  L K  +G+ A +
Sbjct: 238 IIPTAHRYAIEEIMDAVRHYYRRTKR-RVTLEYTLLRGVNDHLWQAKMLAKHTRGLTAHV 296

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           NLIPFNPW G  +  S ++ I  F+  ++ +G    +R  RG D+ AACGQL 
Sbjct: 297 NLIPFNPWEGAPHEGSSREQIRRFAAVLEAAGIPVSVRWSRGRDVGAACGQLA 349


>gi|313159155|gb|EFR58530.1| 23S rRNA m2A2503 methyltransferase [Alistipes sp. HGB5]
          Length = 379

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/361 (35%), Positives = 187/361 (51%), Gaps = 29/361 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L G   E+L     ++G+P    R    Q+ +W+Y + + D   MSDI+   R  L + F
Sbjct: 43  LYGKTPEQLAAVCAELGMP----RFAAKQLARWLYAKHVEDPMRMSDIAAAHRAKLAERF 98

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
              +        S DGT+K+L R           IE+ YIP+  R TLCVSSQ GC + C
Sbjct: 99  RPAFTPPARITESADGTKKYLYRTQ-----QGAWIESAYIPDGERATLCVSSQAGCRMGC 153

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG Q L  +LT  EIL Q++                          ++N+V MGMG
Sbjct: 154 KFCATGRQGLQHSLTTAEILNQIVSLPERD-------------------SLTNVVFMGMG 194

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EPL N DNV ++L I +   G  +S  RITLST+G  P + R  +   V LA+SLH   +
Sbjct: 195 EPLDNTDNVLRALEIMTSEWGFGWSPTRITLSTAGVAPELQRFLDATKVHLAVSLHNPFH 254

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           + R  ++P+ R +P+  +    R Y   ++ RR++FEY+++ G+NDSPR    L ++L G
Sbjct: 255 EERAAIMPVERAWPIAEVAAILRRY-DFTHQRRVSFEYIVMSGLNDSPRHIRELCRLLDG 313

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           I  +INLI F+  PG  +   D + ++ F + +   G  + IR  RG DI AACG L + 
Sbjct: 314 IKCRINLIRFHKIPGSPFFSPDDEAMIRFRDTLTAKGIQTTIRASRGEDIQAACGLLSTA 373

Query: 369 S 369
           +
Sbjct: 374 A 374


>gi|219669867|ref|YP_002460302.1| radical SAM protein [Desulfitobacterium hafniense DCB-2]
 gi|259491984|sp|B8FS78|RLMN_DESHD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|219540127|gb|ACL21866.1| radical SAM enzyme, Cfr family [Desulfitobacterium hafniense DCB-2]
          Length = 357

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 199/372 (53%), Gaps = 29/372 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN +K+     + + EL +   ++G+P    + R  Q+++W+  + +++++ + +I    
Sbjct: 1   MNTMKRMDCRDLNQSELTQHCAELGLP----KFRGRQVFQWVQQKAVQNWEELRNIGAGD 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGT 115
           R  L +   +     V E+I+ DGTRK+L R           +E V +         R T
Sbjct: 57  RQKLQEGLFLQPLRKVREQIAQDGTRKFLFR-----CADGETLECVLMDYDRRKNRDRHT 111

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           +CVS+Q+GC++ C+FC TG     RNL+  EIL QVL    L+                 
Sbjct: 112 VCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQVLDITYLMRQ------------EDP 159

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EE 234
             +++NIV MGMGEPL N++ V K++ + +D  G     RR+T+STSG  P I ++  + 
Sbjct: 160 DFQVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSGVAPKIRQLAKDN 219

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             V LA+SLH+  N  R+ L+P+NRKYPLE L++AC  Y  L+N  RITFE  ++ G   
Sbjct: 220 PQVGLAVSLHSAHNTTRDQLIPMNRKYPLEELMEACGDYTTLTNR-RITFEIALISG-QA 277

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           +   A  +  +LKG  A +NLIP NP  G        K++  F++ ++  G    +R  +
Sbjct: 278 TLEAAQAVGHLLKGQLAHVNLIPVNPVAGTGMARPTAKEVQQFAQSLESMGIPVSVREEK 337

Query: 355 GLDILAACGQLK 366
           G DI AACGQL+
Sbjct: 338 GTDIDAACGQLR 349


>gi|258647948|ref|ZP_05735417.1| radical SAM enzyme, Cfr family [Prevotella tannerae ATCC 51259]
 gi|260851788|gb|EEX71657.1| radical SAM enzyme, Cfr family [Prevotella tannerae ATCC 51259]
          Length = 360

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/375 (33%), Positives = 198/375 (52%), Gaps = 37/375 (9%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           ++ +K++L+G+   EL++    + +P         QI +W+YV  +R+   M+++S   R
Sbjct: 3   DYQQKKNLLGLTPSELKDVARSLQLPA----FVGKQIARWLYVHHVREIDEMTNLSLAAR 58

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            LL Q + I     +D + S DGT K+L R  +        IETV+IP+  RGTLCVSSQ
Sbjct: 59  ELLKQQYVIGNSSPIDAQYSKDGTIKYLYRTLSGDY-----IETVFIPDGDRGTLCVSSQ 113

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C+FC TG Q  V +L+A +IL Q+                          +++N
Sbjct: 114 VGCKMHCAFCMTGRQGYVASLSAADILNQIYSL-------------------PERERLTN 154

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           IV MG GEP  N DNV ++  I +   G ++S +RIT+ST G +  + R  +E    LAI
Sbjct: 155 IVFMGQGEPFDNLDNVLRATEILTSPEGYAWSPKRITVSTIGLLQGLKRFLDESKCSLAI 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA---------RRITFEYVMLKGI 292
           SLH      R  ++P+ R YP++ ++   + Y               RR++FEY++  G+
Sbjct: 215 SLHHAVPAEREKIMPVERAYPIKDVVRLLKQYDFCRPRTNEGVGSKQRRLSFEYIVFSGV 274

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           NDS +DA  +I++LKG+  +INLI F+  P       D + ++ F + +   G  + IR 
Sbjct: 275 NDSLKDAAAIIELLKGLDCRINLIRFHQIPDTPLKGVDDQKMLRFRDYLTAHGIFTTIRA 334

Query: 353 PRGLDILAACGQLKS 367
            RG DI AACG L +
Sbjct: 335 SRGQDIFAACGLLST 349


>gi|302345666|ref|YP_003814019.1| 23S rRNA m2A2503 methyltransferase [Prevotella melaninogenica ATCC
           25845]
 gi|302149773|gb|ADK96035.1| 23S rRNA m2A2503 methyltransferase [Prevotella melaninogenica ATCC
           25845]
          Length = 350

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 123/365 (33%), Positives = 190/365 (52%), Gaps = 29/365 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+GM   EL+E    +G+P         QI KW+Y + ++    M++IS+  R  L 
Sbjct: 5   KKYLLGMTLGELKEVAKSLGMPA----FTGGQIAKWLYTQHVKSIDEMTNISKANREKLA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             ++I   E +D + S DGT K+L             +ETVYIP++ R TLCVSSQVGC 
Sbjct: 61  AEYAIGCKEPIDAQHSKDGTIKYLF-----PTDSGKFVETVYIPDEDRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +L+A +IL Q+                          K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLSATDILNQIYSLPERD-------------------KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DNV ++  I +   G  +S +RIT+S+ G    + R  +E    +AIS+H 
Sbjct: 157 GQGEPMDNLDNVLRTTEIMTADFGYGWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R+ L+P  +   ++ +I+   +Y   S+ RR++FEY++ K  NDS   A  ++++
Sbjct: 217 PLHEQRSELMPAEKGMSIDSIIELLSNY-DFSHQRRLSFEYIVFKDFNDSEEHAKAIVQL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+  ++NLI F+P P       D   +  F   + + G  + IR  RG DI AACG L
Sbjct: 276 LKGLDCRMNLIRFHPIPNIPLQGVDDHRMEKFRNYLTQHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSK 370
            +  K
Sbjct: 336 STAKK 340


>gi|325290448|ref|YP_004266629.1| 23S rRNA m(2)A-2503 methyltransferase [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965849|gb|ADY56628.1| 23S rRNA m(2)A-2503 methyltransferase [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 351

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 140/371 (37%), Positives = 202/371 (54%), Gaps = 29/371 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K    G+   E+E+  L+ GI     + R  Q+++W+  +G+R +  M +I QE    
Sbjct: 1   MEKYDCRGLSEPEMEKLCLQNGI----KKFRADQVFRWVQQKGVRCWDEMKNIGQEDTDK 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE-----KSRGTLCV 118
           L + F +   EIV E++S DGTRK+L R P         IETV +       ++R T+CV
Sbjct: 57  LKKVFCLQPLEIVKEQVSKDGTRKFLFRLPD-----GERIETVLMDYEKDLSRNRETVCV 111

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           S+QVGC + C FC TG     RNL+A EI  QVL     +             I      
Sbjct: 112 STQVGCPVGCPFCATGVNGFHRNLSAGEITGQVLEIVRRMR------------INDPSFN 159

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237
           ++NIV MGMGEP  N ++V K++ I +   G     RR+T+STSG VP I R+ EE   V
Sbjct: 160 VTNIVFMGMGEPFLNEESVLKAVRILNSENGQKIGMRRMTISTSGVVPGIIRLAEENKQV 219

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LAISLH+  N LR+ILVP+NR+YPL+ L+ ACR Y   +   R+T E + L   N +  
Sbjct: 220 GLAISLHSARNHLRDILVPMNRRYPLQQLMRACREYVNQTGR-RVTLE-IALTEANANKD 277

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
           +A  LI++++G+P  INLIP NP          ++ I+ F   ++    S  +R  +G D
Sbjct: 278 EAEALIRLIQGMPVHINLIPVNPVTESSMQRPAKEKIMEFKTLLEAKNLSVTVREEKGTD 337

Query: 358 ILAACGQLKSL 368
           I AACGQL+  
Sbjct: 338 IDAACGQLRQR 348


>gi|325280884|ref|YP_004253426.1| Ribosomal RNA large subunit methyltransferase N [Odoribacter
           splanchnicus DSM 20712]
 gi|324312693|gb|ADY33246.1| Ribosomal RNA large subunit methyltransferase N [Odoribacter
           splanchnicus DSM 20712]
          Length = 351

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/370 (34%), Positives = 188/370 (50%), Gaps = 25/370 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           +   K+++      +L + L   G        R  QIW+WI+ RG+ DF  MS++S+  R
Sbjct: 3   DTSNKKNIREESLRDLSDFLTAQG----EKAFRAKQIWQWIWQRGVTDFAEMSNLSKATR 58

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            LL++H+          + + DGT K   R     I     +E+V IP   + T+CVSSQ
Sbjct: 59  ELLSRHYFFDSLFPQQVQTASDGTEKTAWRLTDGEI-----VESVLIPGNQKFTVCVSSQ 113

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC L C FC TGT    RNLTA EI  QV+                     + G+ +SN
Sbjct: 114 VGCQLGCKFCATGTLGFKRNLTAGEIFEQVVR--------------AQQAAEAQGQPLSN 159

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           IV MGMGEPL N++ V +++   +   GL+ S  RIT+ST+G    I ++ ++ +   LA
Sbjct: 160 IVFMGMGEPLLNYEQVLRAIERITAQDGLAMSPYRITVSTAGIPEKIRQLADDGVRFNLA 219

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA     R  L+P+N+ YPL  +  + +++   +   R TFEY++LK INDS  DA 
Sbjct: 220 LSLHAAKETTRTFLMPVNKAYPLSEIAGSLKYFVEKT-GTRPTFEYLLLKDINDSLEDAK 278

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L    +  P KIN+I +N   G  +  S  K+   F   ++       +R  +G DI A
Sbjct: 279 ALALYCRQFPIKINIIEYNNVEGSGFHHSPDKNRDAFIRFLEGCNMVVNVRRSKGKDIDA 338

Query: 361 ACGQLKSLSK 370
           ACGQL    +
Sbjct: 339 ACGQLAGKQE 348


>gi|78213579|ref|YP_382358.1| hypothetical protein Syncc9605_2063 [Synechococcus sp. CC9605]
 gi|123729671|sp|Q3AHX9|RLMN_SYNSC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78198038|gb|ABB35803.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 351

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 182/378 (48%), Gaps = 38/378 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+G    EL++  +  G        R  Q+  WIY +G R    ++   +  R  L +
Sbjct: 3   QALLGRSAAELQDWAVAQG----QKPFRGRQLHDWIYAKGARSLADITVFPKTWRAALVE 58

Query: 67  H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +   + V   ++ D T K LL            IETV IP   R T+CVSSQVGC 
Sbjct: 59  AGVDVGRLKEVHHSVATDATTKLLLSTED-----GETIETVGIPTDQRLTVCVSSQVGCP 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L R+L   EI+ QVL  R  +                  R+ S+IV M
Sbjct: 114 MACRFCATGKGGLQRSLQTHEIVDQVLSVREAM-----------------DRRPSHIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVM 238
           GMGEPL N   V +++   +D   L   +RRIT+ST G    + ++ E            
Sbjct: 157 GMGEPLLNSSAVLEAIRCLNDD--LGIGQRRITVSTVGVPKTLPQLAELAMQRLGRAQFT 214

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA +  LR  L+P    YP + L++ CRHY  ++   R++FEY++L G+ND P  
Sbjct: 215 LAVSLHAPNQRLREELIPTAHAYPYDALLEDCRHYLDVTGR-RVSFEYILLGGLNDQPEH 273

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L   + G  + +NLI +NP    E+     + I  F   ++R G +  +R  RGLD 
Sbjct: 274 AAELADRVGGFQSHVNLIAYNPIEEEEFKRPTPQRIEAFRRVLERRGVAVSLRASRGLDQ 333

Query: 359 LAACGQLKSLSKRIPKVP 376
            AACGQL+   +  P  P
Sbjct: 334 NAACGQLR-RQQMAPNTP 350


>gi|153809258|ref|ZP_01961926.1| hypothetical protein BACCAC_03570 [Bacteroides caccae ATCC 43185]
 gi|149128028|gb|EDM19249.1| hypothetical protein BACCAC_03570 [Bacteroides caccae ATCC 43185]
          Length = 344

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/367 (35%), Positives = 198/367 (53%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MSKYPLLGMTLVELQSLAKRLGMPG----FAAKQIASWLYDKKVASIDEMTNLSLKYREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     VDE  S DGT K+L +     +G    +E+VYIP+  R TLCVSSQVG
Sbjct: 57  LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                          K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYKANLTASQIINQI-------------------HSLPERDKLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V ++L I +   G ++S +RITLST G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLQALEIMTADYGYAWSPKRITLSTVGLRKGLKRFIEESDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R+ L+P  + Y +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPLAVQRSELMPAEKGYSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  +INLI F+  PG +   +D   +  F + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRINLIRFHAIPGVDLEGADMDTMTRFRDYLTTHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKSLSK 370
            L +  +
Sbjct: 332 MLSTAKQ 338


>gi|121612139|ref|YP_001001357.1| radical SAM protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167006246|ref|ZP_02272004.1| radical SAM enzyme, Cfr family protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|205829695|sp|A1W1W6|RLMN_CAMJJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|87249061|gb|EAQ72023.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 356

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 138/378 (36%), Positives = 203/378 (53%), Gaps = 42/378 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++  + EEL E +  +         R  QI++WIY +   +F  MS + +++R  L Q
Sbjct: 5   VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
           +F     + V  + S DG+ K+L           + +E+V +P K              R
Sbjct: 57  NFHFSPVKCVKNEQSKDGSIKYLFEL-----IDGLRVESVLLPMKKEKINTEGKRISHAR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC   CSFC T    L RNL+  EI+ Q+L  +                  
Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSTGEIVGQILWIKKQNNI------------- 158

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  NIV MGMGEPL N  NV K++ I + + GL+ S RR T+STSG    I  +G+
Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQ 217

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV+++LR  L+PIN+ Y +  ++DA R +P +   +R+ FEY+++ GI
Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR 
Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRE 336

Query: 353 PRGLDILAACGQLKSLSK 370
            +GLDI AACGQLK  +K
Sbjct: 337 SKGLDISAACGQLKERAK 354


>gi|89895437|ref|YP_518924.1| hypothetical protein DSY2691 [Desulfitobacterium hafniense Y51]
 gi|123279892|sp|Q24U12|RLMN_DESHY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|89334885|dbj|BAE84480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 357

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/372 (34%), Positives = 199/372 (53%), Gaps = 29/372 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN +K+     + + EL +   ++G+P    + R  Q+++W+  + +++++ + +I    
Sbjct: 1   MNTMKRMDCRDLNQSELTQHCAELGLP----KFRGRQVFQWVQQKAVQNWEELKNIGAGD 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGT 115
           R  L     +     V E+IS DGTRK+L R           +E V +         R T
Sbjct: 57  RQKLQDGLFLQPLRKVREQISQDGTRKFLFR-----CADGETLECVLMDYDRRKNRDRHT 111

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           +CVS+Q+GC++ C+FC TG     RNL+  EIL QVL    L+                 
Sbjct: 112 VCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQVLDITYLMRQ------------EDP 159

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EE 234
             +++NIV MGMGEPL N++ V K++ + +D  G     RR+T+STSG  P I ++  + 
Sbjct: 160 DFQVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSGVAPKIRQLAKDN 219

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             V LA+SLH+  N  R+ L+P+NRKYPLE L++ACR Y  L+N  RITFE  ++ G   
Sbjct: 220 PQVGLAVSLHSAHNTTRDQLIPMNRKYPLEELMEACRDYTTLTNR-RITFEIALISG-QA 277

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           +   A  +  +LK   A +NLIP NP  G        K++  F++C++  G    +R  +
Sbjct: 278 TLEAAQAVGHLLKRQLAHVNLIPVNPVAGTGMARPTAKEVQQFAQCLESMGIPVSVREEK 337

Query: 355 GLDILAACGQLK 366
           G DI AACGQL+
Sbjct: 338 GTDIDAACGQLR 349


>gi|260591531|ref|ZP_05856989.1| radical SAM enzyme, Cfr family [Prevotella veroralis F0319]
 gi|260536562|gb|EEX19179.1| radical SAM enzyme, Cfr family [Prevotella veroralis F0319]
          Length = 346

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 193/365 (52%), Gaps = 29/365 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+GM   EL+E    +G+P         Q+ KW+Y + ++    M++IS+  R  L 
Sbjct: 5   KKYLLGMTLGELKEVAKSLGMPA----FTGGQMAKWLYSQHVKSIDEMTNISKANREKLA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             + I   E +D + S DGT K+L             +ETVYIPE+ R TLCVSSQ+GC 
Sbjct: 61  AEYEIGCKEPIDAQHSKDGTIKYLF-----PTDSGKFVETVYIPEEDRATLCVSSQIGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NL+A +IL Q+                          K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGNLSATDILNQIYSLPERD-------------------KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DNV ++  + +   G ++S +RIT+S+ G    + R  EE    +AIS+H+
Sbjct: 157 GQGEPMDNLDNVLRTTEVLTADFGYAWSPKRITVSSVGIKGKLKRFLEESNCHVAISMHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R+ L+P  R   +E +++   +Y   S+ RR++FEY++ KG+NDS   A  ++K+
Sbjct: 217 PLHEQRSELMPAERGMSIESIVELLSNY-DFSHQRRLSFEYIVFKGVNDSEEHAKAIVKL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GI  ++NLI F+P P       D   +  F   + + G  + IR  RG DI AACG L
Sbjct: 276 VRGIECRVNLIRFHPIPNIPLHGVDDHKMEQFRNYLTQHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSK 370
            +  K
Sbjct: 336 STAKK 340


>gi|188997621|ref|YP_001931872.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932688|gb|ACD67318.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 354

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 211/370 (57%), Gaps = 29/370 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L     +ELE  +++ G      + R  QI KW+Y + +  +  M+D+S+++R+ L 
Sbjct: 2   KVNLKNFNLKELENFVVEKGW----QKFRAKQIAKWLYKKKVSSYDEMTDLSKDIRNYLK 57

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++      E+V  + S  DG+ K+L +           IETV I EK+  TLCVS+QVGC
Sbjct: 58  ENTEFNALELVMYQQSKIDGSIKFLWKLKD-----GNTIETVLINEKNHKTLCVSTQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC+T    L+RNL   EI+ Q +  +  LG                  +ISNIV 
Sbjct: 113 AVGCKFCFTTKDGLIRNLETAEIVEQYINVQRFLG-------------MEEENRISNIVY 159

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLAI 241
           MGMGEPL N++NVKKS+ I +    +  S R+IT+S+SG +  I R+ E+     V LA+
Sbjct: 160 MGMGEPLANYENVKKSVQIFTHPDMVGLSHRKITISSSGILHQIKRMYEDKEFPEVKLAV 219

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SL+A + D R  L+PI++   L+ L+D  R  P L    RIT EYV++KG+NDS +DA  
Sbjct: 220 SLNASNQDQRAFLMPISQTNTLQDLMDLLRSIP-LKPGWRITLEYVLMKGVNDSEQDAKR 278

Query: 302 LIKILKGIPA--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L+ +LK      K+NLIPFNP+P  E+   +++ ++ F + +  +  ++ IR  +G DI 
Sbjct: 279 LVNLLKKDKHRFKVNLIPFNPYPSAEFERPEEERVLKFEKILWDNNIATFIRWSKGRDID 338

Query: 360 AACGQLKSLS 369
           AACGQL+  +
Sbjct: 339 AACGQLRKKA 348


>gi|158337109|ref|YP_001518284.1| radical SAM protein [Acaryochloris marina MBIC11017]
 gi|205829656|sp|B0C9F4|RLMN_ACAM1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|158307350|gb|ABW28967.1| radical SAM enzyme, Cfr family [Acaryochloris marina MBIC11017]
          Length = 351

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/364 (32%), Positives = 183/364 (50%), Gaps = 31/364 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+G  + +L         P      R  Q+ +WIY +G+     ++ + ++ R  +  
Sbjct: 11  PPLLGASKAQLTHWAQTYQQPA----YRGQQVHQWIYQKGVHSLSDITVLPKQWRTEIAD 66

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +   +I     + DGT K+LL+     I     IETV IP + R T+CVSSQVGC +
Sbjct: 67  I-PVGRSQIHHRSAAQDGTVKYLLKLADGQI-----IETVGIPTQKRLTVCVSSQVGCPM 120

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG  +  RNL   EI+ QVL  +                     +++ N+V MG
Sbjct: 121 GCDFCATGKGEYQRNLACHEIVDQVLTVQE-----------------DFQQRVGNVVFMG 163

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
           MGEPL N + V  ++   +  +G    +R +T+ST G    I ++   ++ + LA+SLHA
Sbjct: 164 MGEPLLNLEQVLAAVRSLNQDVG--IGQRSLTVSTVGIPKQILKLAQHQLQITLAVSLHA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +  +R  LVP  + YPLE L+  CR Y   +   R+TFEY++L G+ND    AL L   
Sbjct: 222 SNQRIRTQLVPSAKHYPLEKLLKDCRAYVTQTGR-RVTFEYIVLSGVNDQTEHALELAHH 280

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G  + +NLIP+NP    +Y    QK +  F   ++    ++ IR  RGLD  AACGQL
Sbjct: 281 LRGFQSHVNLIPYNPISEVDYQRPTQKQLQQFLNSLQSQHITASIRRSRGLDKDAACGQL 340

Query: 366 KSLS 369
           ++  
Sbjct: 341 RATQ 344


>gi|149924885|ref|ZP_01913219.1| hypothetical protein PPSIR1_09370 [Plesiocystis pacifica SIR-1]
 gi|149814238|gb|EDM73847.1| hypothetical protein PPSIR1_09370 [Plesiocystis pacifica SIR-1]
          Length = 382

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 155/376 (41%), Positives = 210/376 (55%), Gaps = 19/376 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L GM REEL E L   G        R  Q++ WI+ R   DF  M+++S+  R  L
Sbjct: 21  DKPNLRGMSREELGEFL---GRELSAPAYRVDQVFGWIHQRRAPDFDAMTNLSKADRAKL 77

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVG 123
            +  S+   E+   + + DGTRK  LR           IE+V IP   RG T C+SSQVG
Sbjct: 78  RERASLDTLEVDTIQRARDGTRKLRLRT-----ADGEAIESVLIPNDERGLTQCISSQVG 132

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C FC T +    RNL   EI+ QV  AR+LL +    E            +I+NIV
Sbjct: 133 CALDCRFCATASLGFRRNLDTWEIVDQVARARTLLAEEAEREGARWTP------RITNIV 186

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLA 240
            MGMGEPL NF+ V++SLSI +D+ G + + RRIT+STSG VP I R   E     V LA
Sbjct: 187 YMGMGEPLHNFNQVRRSLSILTDAGGEAIAGRRITVSTSGLVPAIERFAREGLGEEVGLA 246

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISL+A ++ +R+ ++PINRK+ ++ L+ A R     S  RR+TFEYV+L G+NDS  DA 
Sbjct: 247 ISLNATTDAVRDEVMPINRKWKIDELLAAVRR-VPTSRRRRVTFEYVLLGGVNDSDADAH 305

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            LI++++     +N+IPFNP     Y    Q  +  F   ++RSG    +RTPRG DI A
Sbjct: 306 RLIELVREFRCHVNVIPFNPHEHAPYRRPSQSRVRAFMAILRRSGVDVWLRTPRGDDIQA 365

Query: 361 ACGQLKSLSKRIPKVP 376
           ACGQL     +    P
Sbjct: 366 ACGQLALDDPKTAAPP 381


>gi|254431713|ref|ZP_05045416.1| radical SAM enzyme, Cfr family [Cyanobium sp. PCC 7001]
 gi|197626166|gb|EDY38725.1| radical SAM enzyme, Cfr family [Cyanobium sp. PCC 7001]
          Length = 354

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 180/377 (47%), Gaps = 42/377 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L+GM   +LE      G P      R  Q+  W+Y +G R    +S + +  R  L  
Sbjct: 3   QPLLGMGLADLERWAQDQGQPA----FRGRQLHDWLYAKGARSLDAVSVLPKAWREQLLA 58

Query: 67  HFS------IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
                    I     +   ++ DGT K LL          + IETV IP   R T+CVSS
Sbjct: 59  EPPPGATDWIGRSRELHRSVARDGTTKLLL-----ATADGLSIETVGIPAPGRLTVCVSS 113

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC TG   L R+L   EI+ QVL  R ++G+ P                 S
Sbjct: 114 QVGCPMACRFCATGKGGLQRSLAVHEIVDQVLSVREVMGERP-----------------S 156

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI----- 235
           ++V MGMGEPL N + V  ++        L  ++R+IT+ST G    +  + E       
Sbjct: 157 HVVFMGMGEPLLNIEAVLAAIDCLCTD--LGMAQRQITVSTVGVPRTLPTLAERALERLG 214

Query: 236 --GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
                LA+SLHA    LR  L+P    YP+E L+D CR Y  ++   R++FEY++L G+N
Sbjct: 215 RAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLDDCRRYVAITGR-RVSFEYILLGGLN 273

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D P  A  L ++++G  + +NLIP+NP    E+       +  F   ++    +  +R  
Sbjct: 274 DQPHHAEALARLIRGFQSHVNLIPYNPIEEEEFQRPSPAAVEAFRWALQERRVAVSVRAS 333

Query: 354 RGLDILAACGQLKSLSK 370
           RGLD  AACGQL+   +
Sbjct: 334 RGLDADAACGQLRRRHQ 350


>gi|294631675|ref|ZP_06710235.1| cfr family radical SAM enzyme [Streptomyces sp. e14]
 gi|292835008|gb|EFF93357.1| cfr family radical SAM enzyme [Streptomyces sp. e14]
          Length = 368

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 124/369 (33%), Positives = 181/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA+  IG        R  Q+ +  + R   D +  +DI    R  L +
Sbjct: 20  RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGSREKLRE 75

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   +S D   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  ALLPELMSVV-RHLSTDAGTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V  ++   +D    GL  S+R +T+ST G VP I R  +E     LAI
Sbjct: 181 MGMGEPLANYKRVVGAIRALTDPEPDGLGLSQRGVTVSTVGLVPAIHRFSDEGFKCRLAI 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   R++ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFEYAAKSGR-RLSIEYALIRDINDQAWRGDR 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG P  +N IP NP PG ++  S  +D   F E I   G    IR  RG +I  A
Sbjct: 300 LGRLLKGRPVHVNCIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAATER 368


>gi|281419754|ref|ZP_06250753.1| radical SAM enzyme, Cfr family [Prevotella copri DSM 18205]
 gi|281406283|gb|EFB36963.1| radical SAM enzyme, Cfr family [Prevotella copri DSM 18205]
          Length = 355

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/382 (34%), Positives = 200/382 (52%), Gaps = 31/382 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN  +K+ L+G+   EL++    +G+P         Q+ KW+Y + ++    M++IS+  
Sbjct: 1   MNN-EKKYLLGLTLAELKQVAKDLGMPA----FTGGQMAKWLYEQHVKSIDEMTNISKAN 55

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L   + I      D + S DGT K+L             +ETVYIP+K R TLCVSS
Sbjct: 56  RAKLAAEYEIGCFGYSDAQHSVDGTIKYLF-----PTRSGKFVETVYIPDKDRATLCVSS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC TG Q    +L A +IL QV     +                    K++
Sbjct: 111 QVGCKMNCLFCQTGKQGFEGSLPAGDILNQVYSLPEVD-------------------KLT 151

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIV MG GEP+ N DNV ++  I + + G ++S +RIT+S+ G    + R  EE    +A
Sbjct: 152 NIVFMGQGEPMDNLDNVLRATEILTANYGWAWSPKRITVSSVGVKNKLKRFLEESDCHVA 211

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           IS+H      R  L+P  R   +E +++  R+Y   S+ RR++FEY++ KG+NDS + A 
Sbjct: 212 ISMHDPIPSERAELMPAERGMGIEQVVELLRNY-DFSHQRRLSFEYIVFKGVNDSMQHAK 270

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            +IK++KG+  + NLI F+  P       D + +  F + + + G  + IR  RG DI A
Sbjct: 271 AIIKLVKGLDCRFNLIRFHQIPDIPLQGVDDEKMEQFRDYLTQHGVFTTIRASRGQDIYA 330

Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382
           ACG L S SK+I ++   E + 
Sbjct: 331 ACGLL-STSKKIGEIREHEDEE 351


>gi|57236899|ref|YP_179852.1| radical SAM protein [Campylobacter jejuni RM1221]
 gi|81557377|sp|Q5HS83|RLMN_CAMJR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|57165703|gb|AAW34482.1| radical SAM enzyme, Cfr family [Campylobacter jejuni RM1221]
 gi|315059159|gb|ADT73488.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 356

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 140/378 (37%), Positives = 204/378 (53%), Gaps = 42/378 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++  + EEL E +  +         R  QI++WIY +   +F  MS + +++R  L Q
Sbjct: 5   VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
           +F     + V  + S DG+ K+L           + IE+V +P K              R
Sbjct: 57  NFHFSPVKCVKNEQSKDGSIKYLFELVD-----GLRIESVLLPMKEEKIDAEGKRISHAR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +                  
Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  NIV MGMGEPL N  NV K++ I + + GL+ S RR T+STSG    I  +G+
Sbjct: 159 -PYERRINIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQ 217

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV+++LR  L+PIN+ Y +  ++DA R +P +   +R+ FEY+++ GI
Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR 
Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCTIRE 336

Query: 353 PRGLDILAACGQLKSLSK 370
            +GLDI AACGQLK  +K
Sbjct: 337 SKGLDISAACGQLKERAK 354


>gi|148240394|ref|YP_001225781.1| Fe-S-cluster redox protein [Synechococcus sp. WH 7803]
 gi|205829913|sp|A5GNG9|RLMN_SYNPW RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|147848933|emb|CAK24484.1| Predicted Fe-S-cluster redox enzyme [Synechococcus sp. WH 7803]
          Length = 351

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 186/379 (49%), Gaps = 37/379 (9%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           ++  + ++L+G+   ELE   +  G        R  Q+  W+Y +G  D Q ++ + +  
Sbjct: 2   ISTAQSKTLLGLGASELERWAVSQGQSA----FRGRQLHDWLYAKGACDLQDITVLPKAW 57

Query: 61  RHLLNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           R  L      I   +  D K++ D T K LL            +ETV IP   R T+CVS
Sbjct: 58  RASLQDKGVIIGRLKEQDRKVAGDATTKLLL-----GTDDGETLETVGIPTDQRLTVCVS 112

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC + C FC TG   L R+L   EI+ QVL  R ++                  R+ 
Sbjct: 113 SQVGCPMACRFCATGKGGLQRSLYTHEIVAQVLSVREVM-----------------ERRP 155

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE------ 233
           S++V MGMGEPL N + V  ++   +D   L   +RRIT+ST G    + R+ E      
Sbjct: 156 SHVVFMGMGEPLLNIEAVLDAIRCLNDD--LGIGQRRITVSTVGVPRTLPRLAELAMERL 213

Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
                 LA+SLHA +  LR  L+P    YP + L+D CRHY  ++   R++FEY++L G+
Sbjct: 214 GRAQFTLAVSLHAPNQSLREELIPTAHAYPYDALLDDCRHYLAITGR-RVSFEYILLGGL 272

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND P  A  L   + G  + +NLI +NP    E+    +  I  F   ++  G +  +R 
Sbjct: 273 NDHPAHAEELADRVGGFQSHVNLIAYNPIEEEEFQRPTRDRIEGFRRVLESRGVAVSLRA 332

Query: 353 PRGLDILAACGQLKSLSKR 371
            RGLD  AACGQL+   ++
Sbjct: 333 SRGLDQDAACGQLRRSRQK 351


>gi|329956949|ref|ZP_08297517.1| 23S rRNA m2A2503 methyltransferase [Bacteroides clarus YIT 12056]
 gi|328523706|gb|EGF50798.1| 23S rRNA m2A2503 methyltransferase [Bacteroides clarus YIT 12056]
          Length = 345

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 194/371 (52%), Gaps = 29/371 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+G+   EL+  +  +G+P         QI  W+Y +       M+++S + R LL 
Sbjct: 2   KQPLLGLTLTELQAVVKNLGMPG----FAAKQIASWLYDKKAASIDEMTNLSLKHRELLK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + + +     VD   S DGT K+L R      G    +E VYIP++ R TLCVSSQVGC 
Sbjct: 58  EIYEVGGEAPVDAMRSADGTVKYLYR-----AGEGHYVEAVYIPDEDRATLCVSSQVGCK 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLTA +I+ Q+                          K++N+VMM
Sbjct: 113 MNCKFCMTGKQGFTANLTANQIINQI-------------------NSLPERDKLTNVVMM 153

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V K+L + + S G  +S +RITLS+ G    + R  EE    LAISLH+
Sbjct: 154 GMGEPLDNLDEVLKALEVMTSSYGYGWSPKRITLSSVGLRKGLQRFIEESDCHLAISLHS 213

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P  + + +  +++  R+Y   S  RR++FEY++ KG+NDS   A  L+K+
Sbjct: 214 PVPLQRRELMPAEKAFSIAEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+  ++NLI F+  PG +   +D + + T  + +   G  + IR  RG DI AACG L
Sbjct: 273 LRGLDCRVNLIRFHAIPGVDLEGADMETMTTLRDYLTSHGLFTTIRASRGEDIFAACGML 332

Query: 366 KSLSKRIPKVP 376
            +  +   K  
Sbjct: 333 STAKQEENKEE 343


>gi|238019374|ref|ZP_04599800.1| hypothetical protein VEIDISOL_01238 [Veillonella dispar ATCC 17748]
 gi|237864073|gb|EEP65363.1| hypothetical protein VEIDISOL_01238 [Veillonella dispar ATCC 17748]
          Length = 348

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 200/368 (54%), Gaps = 30/368 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   EEL+       I     + R  Q+  +IY R + DFQ M+   +E+R  L+ + 
Sbjct: 4   LLGKSLEELQSIFKTHNI----QKFRAKQLIDYIYHRYVFDFQDMTQFPKELRQWLSDNC 59

Query: 69  SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I  P ++ E +S DG TRK L+    +       +E V + +    ++CVSSQVGC++ 
Sbjct: 60  IISLPTLITESVSPDGKTRKILVEMIDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +    L R+LTA EI+ QV++  +L  +                 +I ++V+MG 
Sbjct: 115 CVFCASTQGGLYRDLTAAEIIGQVVIFGALTKE-----------------QIHSVVVMGA 157

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N+DNV ++L +  D +  + S R++T+ST G+VPNI ++ +E + + LA+SLHA 
Sbjct: 158 GEPLQNYDNVLQALQLLHDPVICNISYRKMTISTCGWVPNIYKLADEGLPITLALSLHAT 217

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N++R  ++P+  +Y L  ++DA ++Y   +  RRITFEY+++  IN S  +A  L +I 
Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYD-TTQRRITFEYILIDSINASMEEAHALGEIC 276

Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           K  P   +NLIP N     E       ++ TF + +   G S  +R   G  I AACGQL
Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVASYGVSVTVRKEMGDAIQAACGQL 336

Query: 366 KSLSKRIP 373
           K+   R  
Sbjct: 337 KAAHGRKK 344


>gi|268316491|ref|YP_003290210.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252]
 gi|262334025|gb|ACY47822.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252]
          Length = 364

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 135/380 (35%), Positives = 197/380 (51%), Gaps = 33/380 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M       L  + REELE    ++G P    R R  Q++KWIY +G    + M+D+ +  
Sbjct: 1   MTVRTPIDLQTLNREELERLAEEMGEP----RYRGRQLFKWIYGKGATSVEQMTDLPRAF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------R 113
           R  L +   I   E V +  + D T K L R P+        +E+V IP+         R
Sbjct: 57  RAELARRARITRLEPVRQLTAGDQTVKVLFRLPS-----GRHVESVLIPDFDEETGRVRR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC++ C+FC TG     +NLTA EI  QV     L  +             
Sbjct: 112 LTVCVSSQVGCAMGCAFCATGLMGFQQNLTAGEIYDQVWQLNRLAEE------------- 158

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
             GR+I+N+V MGMGEPL N+D V +S+++ +D  GL  S RRIT+ST G    I ++ +
Sbjct: 159 RFGRRITNVVYMGMGEPLLNYDAVLRSVALLTDRDGLGLSPRRITVSTVGLARRIRQLAD 218

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKY--PLEMLIDACRHYPGLSNARRITFEYVMLK 290
           + +   LA+SLHA +N  R+ ++P+NR     L+ LI+A R Y      + IT+EY + +
Sbjct: 219 DGVRFRLAVSLHAPTNAQRSAIMPVNRNEQTDLDDLIEAIR-YFEARTGQTITYEYCLFE 277

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           G ND P DA  L  + +  P K+NLI +NP  G  +    ++ +  F   +   G +  +
Sbjct: 278 GFNDRPEDAHRLADLTEQAPGKVNLILYNPVEGLPFRRPSEERLQAFIRVLVDRGVTVTV 337

Query: 351 RTPRGLDILAACGQLKSLSK 370
           R  RG DI AACGQL    +
Sbjct: 338 RRSRGQDINAACGQLAVREQ 357


>gi|218563299|ref|YP_002345079.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|123042659|sp|Q0P7R8|RLMN_CAMJE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|112361006|emb|CAL35807.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315926640|gb|EFV06020.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 356

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 138/378 (36%), Positives = 204/378 (53%), Gaps = 42/378 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++  + EEL E +  +         R  QI++WIY +   +F  MS + +++R  L +
Sbjct: 5   VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAR 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
           +F     + V  + S DG+ K+L           + +E+V +P K              R
Sbjct: 57  NFHFSPVKCVKNEQSKDGSIKYLFEL-----IDGLRVESVLLPMKEEKIDAEGKRISHAR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +                  
Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  NIV MGMGEPL N  NV K++ I + + GL+ S RR T+STSG    I  +G+
Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQ 217

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV+++LR  L+PIN+ Y +  ++DA R +P +   +R+ FEY+++ GI
Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR 
Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRE 336

Query: 353 PRGLDILAACGQLKSLSK 370
            +GLDI AACGQLK  +K
Sbjct: 337 SKGLDISAACGQLKERAK 354


>gi|288803681|ref|ZP_06409111.1| radical SAM enzyme, Cfr family [Prevotella melaninogenica D18]
 gi|288333921|gb|EFC72366.1| radical SAM enzyme, Cfr family [Prevotella melaninogenica D18]
          Length = 350

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 189/365 (51%), Gaps = 29/365 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+GM   EL+E    +G+P         QI KW+Y + ++    M++IS+  R  L 
Sbjct: 5   KKYLLGMTLGELKEVAKSLGMPA----FTGGQIAKWLYTQHVKSIDEMTNISKANREKLA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             ++I   E +D + S DGT K+L             +ETVYIP++   TLCVSSQVGC 
Sbjct: 61  AEYAIGCKEPIDAQHSKDGTIKYLF-----PTDSGKFVETVYIPDEDHATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +L+A +IL Q+                          K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLSATDILNQIYSLPERD-------------------KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DNV ++  I +   G  +S +RIT+S+ G    + R  +E    +AIS+H 
Sbjct: 157 GQGEPMDNLDNVLRTTEIMTADFGYGWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R+ L+P  +   ++ +I+   +Y   S+ RR++FEY++ K  NDS   A  ++++
Sbjct: 217 PLHEQRSELMPAEKGMSIDSIIELLSNY-DFSHQRRLSFEYIVFKDFNDSEEHAKAIVQL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+  ++NLI F+P P       D   +  F   + + G  + IR  RG DI AACG L
Sbjct: 276 LKGLDCRMNLIRFHPIPNIPLQGVDDHRMEKFRNYLTQHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSK 370
            +  K
Sbjct: 336 STAKK 340


>gi|306822705|ref|ZP_07456083.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679]
 gi|304554250|gb|EFM42159.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679]
          Length = 393

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 191/375 (50%), Gaps = 28/375 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L    M  +E      ++G+P    R R  Q+    Y     D +  SD     R  
Sbjct: 38  KPPLHFADMSEDERIAKAKELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAE 93

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
             + F       V  +++ +GT  K L R     +     IE+V +   +R TLC+SSQV
Sbjct: 94  AAEAFFPTLITEVTRQVADEGTTIKTLWRLFDGSL-----IESVLMRYPTRTTLCISSQV 148

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++A EI+ QV +A   + D           +     ++SNI
Sbjct: 149 GCGMGCPFCATGKLGLTRNMSAGEIVEQVRVAAKAMRD---------GEVAGGPGRLSNI 199

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+ +V  ++   S     G   S R IT+ST G VP I ++  E I V L
Sbjct: 200 VFMGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 259

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++ +  ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 260 AVSLHAPSDELRDELVPMNKRFDITQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 318

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G ++  S  +D   F + + ++G ++ +R  RG 
Sbjct: 319 RLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQ 378

Query: 357 DILAACGQLKSLSKR 371
           DI  ACGQL +  ++
Sbjct: 379 DIDGACGQLAAKERQ 393


>gi|78184186|ref|YP_376621.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
           CC9902]
 gi|123743556|sp|Q3AZA0|RLMN_SYNS9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78168480|gb|ABB25577.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 351

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 184/369 (49%), Gaps = 37/369 (10%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL- 64
           K  L+G    ELE+  +  G    H   R  QI  W+Y +G++    +S + ++ R  L 
Sbjct: 2   KNVLLGRSAAELEDWAVAQG----HKSFRGRQIHDWLYNKGVKSLSEISALPKQWRTELE 57

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q F +   ++V + ++ D T K LL            IETV IP   R T+C+SSQVGC
Sbjct: 58  AQTFRVGRLKLVHQSVAADATTKLLL-----ATDDGETIETVGIPTDQRLTVCISSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L R+L   EI+ QVL  R  +                  R+ S++V 
Sbjct: 113 PMACRFCATGKSGLQRSLATHEIVDQVLSVREAM-----------------DRRPSHVVF 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGV 237
           MGMGEPL N + V +++   +    L   +RRIT+ST G    + ++ E           
Sbjct: 156 MGMGEPLLNSEAVLETIRCLNTD--LGIGQRRITVSTVGVPKTLPQLAELAMEKLGRAQF 213

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA +  LR  L+P    YP + L+D CRHY  L+   R++FEY++L  +ND P 
Sbjct: 214 TLAVSLHAPNQQLREELIPTAHAYPYDDLLDDCRHYLDLTGR-RVSFEYILLGELNDHPE 272

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L   + G  + +NLI +NP    E+     + I  F   ++R G +  +R  RGLD
Sbjct: 273 HAAELADRVGGFQSHVNLIAYNPIEEEEFKRPTSQRIEAFRRVLERRGVAVSLRASRGLD 332

Query: 358 ILAACGQLK 366
             AACGQL+
Sbjct: 333 QNAACGQLR 341


>gi|297202671|ref|ZP_06920068.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           sviceus ATCC 29083]
 gi|197713246|gb|EDY57280.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           sviceus ATCC 29083]
          Length = 368

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 183/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +E + +IG        R  Q+ +  + R   D    +DI    R  L +
Sbjct: 20  RHLADLTPAERKEVVAEIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAGARGKLQE 75

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   +S D   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  ALLPELMTVV-RHLSTDQGTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V +S+   +D    GL  S+R IT+ST G VP I R  +E     LAI
Sbjct: 181 MGMGEPLANYKRVTQSIRALTDPAPDGLGLSQRGITVSTVGLVPAIHRFSDEGFKCRLAI 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   R++ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFEYVEKSGR-RLSIEYALIRDINDQAWRGDR 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG P  +NLIP NP PG ++  S  +D   F E I   G +  IR  RG +I  A
Sbjct: 300 LGRLLKGKPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVAVTIRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAATER 368


>gi|327313758|ref|YP_004329195.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola F0289]
 gi|326945675|gb|AEA21560.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola F0289]
          Length = 357

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 31/378 (8%)

Query: 2   NFLK--KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
             ++  K+ L+GM   EL+E    +G+P         Q+ KW+Y + ++    M++IS+ 
Sbjct: 3   TSMETAKKYLLGMTLGELKEVAKSLGMPA----FTGGQMAKWLYTQQVKSIDEMTNISKA 58

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
            R  L   ++I   E  D + S DGT K+L             +ETVYIPE  R TLCVS
Sbjct: 59  NREKLAAAYAIGCKEPTDVQYSKDGTVKYLF-----PTDSGKFVETVYIPEDGRATLCVS 113

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC + C FC TG Q    +L+A +IL QV                          K+
Sbjct: 114 SQVGCKMNCLFCQTGKQGFEGSLSATDILNQVYSLPERD-------------------KL 154

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +NIV MG GEP+ N DNV +   I +   G  +S +RIT+S+ G    + R  EE    +
Sbjct: 155 TNIVFMGQGEPMDNLDNVLRVTEILTAGFGYGWSPKRITVSSVGIKGKLKRFLEESDCHV 214

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           AIS+H+  ++ R+ L+P  R   +E ++D   +Y   S+ RR++FEY++ K +NDS   A
Sbjct: 215 AISMHSPLHEQRSELMPAERGMSIESIVDLLGNY-DFSHQRRLSFEYIVFKDVNDSEAHA 273

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             ++++LKG+  +INLI F+P P       D + +  F   + + G  + IR  RG DI 
Sbjct: 274 KAIVRLLKGLDCRINLIRFHPIPNTPLQGVDDRKMEEFRNYLTQHGVFTTIRASRGQDIF 333

Query: 360 AACGQLKSLSKRIPKVPR 377
           AACG L +  ++  +  +
Sbjct: 334 AACGLLSTAKEKDGRKGK 351


>gi|297182513|gb|ADI18675.1| predicted Fe-S cluster redox enzyme [uncultured Acidobacteria
           bacterium HF4000_26D02]
          Length = 384

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 143/378 (37%), Positives = 202/378 (53%), Gaps = 28/378 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +  +   ELE  +  +G+     R    QI++WIY RG+  F  M+D+S  VR  L 
Sbjct: 30  KTDIAELEPAELEAVVSTLGVE----RFHARQIYRWIYRRGLERFDRMTDLSLPVREQLE 85

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              +I  P +   + S DGT+K+L+            IE+V+IP+    T CVS+QVGC+
Sbjct: 86  AALTITTPAVRTREQSSDGTQKFLVTL-----ADGRTIESVFIPDTPAMTFCVSTQVGCA 140

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   LVRNL+A EI  QV +    L                +  +  NIV+M
Sbjct: 141 MRCGFCLTGQMGLVRNLSAGEIAGQVRVLAREL---------------ELQDRRFNIVLM 185

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
           GMGEPL N+D   K+L I +   GL+ + RR+TLST G +P + R+  E     LAISLH
Sbjct: 186 GMGEPLHNYDATMKALRILAAPAGLALTPRRVTLSTIGILPALERLAHEPWLPNLAISLH 245

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR+ L+P +R   L  L   CR +P + +  RITFEYV+L G+ND+  DA  L K
Sbjct: 246 ATTDRLRHELIPTSRTQRLGDLAAVCRRFP-VKHRDRITFEYVLLAGVNDTEADATRLPK 304

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+G+ AK+NLIP N  PG  +     + +  F+  +  +G    +R  RG DI AACGQ
Sbjct: 305 LLRGLRAKVNLIPLNEAPGIPFSRPSDRRVDWFARSLASAGLRVSVRKSRGRDIRAACGQ 364

Query: 365 LKSLSKRIPKVPRQEMQI 382
           L     R  + P Q    
Sbjct: 365 LIVEGPR--RSPGQRAAE 380


>gi|330790726|ref|XP_003283447.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum]
 gi|325086712|gb|EGC40098.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum]
          Length = 390

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 154/358 (43%), Positives = 227/358 (63%), Gaps = 22/358 (6%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
           G+ + +L E   K+  P    +    Q+WK +Y +GI   +  + IS+E + ++ ++F +
Sbjct: 54  GLPKLDLIEKFEKLNFP----KYSVDQVWKLMYNKGIDQIKDFNLISKERKSIMEENFKL 109

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
               I   ++S DGTRK+L+ F         E+E+V+IPE SRGTLCVSSQVGC+  C+F
Sbjct: 110 DTGTITKHQLSVDGTRKFLISF------DGDEVESVFIPESSRGTLCVSSQVGCTFACTF 163

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C+TGTQK  RNLTA EI+ QV+ AR LL DF   E+          R ++NIV MG GEP
Sbjct: 164 CFTGTQKFKRNLTANEIVAQVVAARKLLNDFNASEE----------RLLTNIVFMGQGEP 213

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSND 249
             N+ NVKK++SI +DS GL+  K +IT+STSG VP I R+G +   + LAISLH+ +++
Sbjct: 214 FYNYRNVKKAISIITDSNGLAIGKSKITVSTSGVVPIIERLGTDFPGIGLAISLHSPNDE 273

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           +R+ +V  NR++P+E L+ +C  +   +   RIT EYV L+ ++D+ +DAL+LI + K  
Sbjct: 274 VRSKIVTANRQWPIEELVQSCIKF-SKTTKSRITLEYVPLQDVHDTEQDALDLIPLCKRF 332

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           P+ +N+IPFNPWPG  +  S    I  F+  ++ +   + IR  RG DI+AACGQLKS
Sbjct: 333 PSLVNIIPFNPWPGSPHESSTNNQIQIFANILESNNVKTTIRQSRGRDIMAACGQLKS 390


>gi|282850141|ref|ZP_06259520.1| 23S rRNA m2A2503 methyltransferase [Veillonella parvula ATCC 17745]
 gi|294791793|ref|ZP_06756941.1| radical SAM enzyme, Cfr family [Veillonella sp. 6_1_27]
 gi|294793654|ref|ZP_06758791.1| radical SAM enzyme, Cfr family [Veillonella sp. 3_1_44]
 gi|282579634|gb|EFB85038.1| 23S rRNA m2A2503 methyltransferase [Veillonella parvula ATCC 17745]
 gi|294455224|gb|EFG23596.1| radical SAM enzyme, Cfr family [Veillonella sp. 3_1_44]
 gi|294457023|gb|EFG25385.1| radical SAM enzyme, Cfr family [Veillonella sp. 6_1_27]
          Length = 348

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 198/368 (53%), Gaps = 30/368 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G   EEL+       I     + R  Q+  +IY R I DF+ M+   +++R  L  + 
Sbjct: 4   LLGKSLEELQSIFKTHNI----QKFRAKQLIDYIYHRYIFDFEDMTQFPKDLRQWLGDNC 59

Query: 69  SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I  P ++ E I+ DG TRK L+    +       +E V + +    ++CVSSQVGC++ 
Sbjct: 60  VISLPTLITESIAPDGKTRKILVEMSDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +    L R+LT  EI+ QV++  +L  +                 +I ++V+MG 
Sbjct: 115 CVFCASTQGGLYRDLTVAEIIGQVVIFGALTKE-----------------EIHSVVVMGA 157

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N+DNV ++L +  D M  + S R++T+ST G+VPNI ++ +E + + LA+SLHA 
Sbjct: 158 GEPLQNYDNVLQALQLLHDPMICNISYRKMTISTCGWVPNIYKLADEGLPITLALSLHAT 217

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N++R  ++P+  +Y L  ++DA ++Y   +  RR+TFEY+++  +N S  DA  L KI 
Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYN-TTQRRVTFEYILIDSVNASIDDAHALGKIC 276

Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           K  P   +NLIP N     E       ++ TF + +   G S  +R   G  I AACGQL
Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVSSYGVSVTVRKEMGDAIQAACGQL 336

Query: 366 KSLSKRIP 373
           K+   R  
Sbjct: 337 KAAHGRKK 344


>gi|323141165|ref|ZP_08076066.1| 23S rRNA m2A2503 methyltransferase [Phascolarctobacterium sp. YIT
           12067]
 gi|322414308|gb|EFY05126.1| 23S rRNA m2A2503 methyltransferase [Phascolarctobacterium sp. YIT
           12067]
          Length = 351

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/369 (34%), Positives = 202/369 (54%), Gaps = 28/369 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + +  +  EEL++  +  G+     + R  Q+++W+Y + + DF  M ++S+    +L +
Sbjct: 2   QDIFALPIEELQDLFVAAGL----KKFRAKQVFQWLYQKSVFDFTAMHNLSKADIAVLQE 57

Query: 67  HFSIIY--PEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            F+++    EI+ E+ S DG T K LL  P         +ETV +      ++CVSSQVG
Sbjct: 58  KFTVLPHSLEILREQNSSDGMTSKLLLGLPD-----GNSVETVLMHHDYGYSVCVSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +G +  VRNLTA EI+ QV L    L +               G  +S +V
Sbjct: 113 CDMHCAFCASGLKGAVRNLTAAEIVAQVYLFNERLRE--------------QGAMVSRVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG GEP+ NFD+V ++L         + S R +T+ST G +P I R+ E+   + LAIS
Sbjct: 159 VMGSGEPMLNFDSVLQALDFLHREDTCNMSYRNMTISTCGIIPGIKRLEEQGNPINLAIS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHAV N+LR  L+P+N+ YP   ++ A   Y   S  + IT+EY++LKG NDSP+DA  L
Sbjct: 219 LHAVKNELRTALMPVNKGYPFVDVLTAAESYSKASGRQ-ITYEYILLKGKNDSPQDAELL 277

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
              L+   A +NLIP NP P   +    +  +  F   ++++  ++ +R   G DI AAC
Sbjct: 278 SNYLRYKQASVNLIPANPVPEQGFERPSKAAVERFLRILQKNRINATVRKEMGKDIDAAC 337

Query: 363 GQLKSLSKR 371
           GQL++   +
Sbjct: 338 GQLRAKFAK 346


>gi|172040504|ref|YP_001800218.1| hypothetical protein cur_0824 [Corynebacterium urealyticum DSM
           7109]
 gi|171851808|emb|CAQ04784.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
           7109]
          Length = 370

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 193/373 (51%), Gaps = 26/373 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L  +    +  E++EEA++++G+P    + R  Q++   Y R   D   M+D+ +  R  
Sbjct: 16  LPPKHFADLTAEQVEEAVVELGLP----KFRAKQLYNQYYGRLEGDPLEMTDLPEASRQA 71

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           + +         + +  + DG TRK L R     +     +E+V +    R TLC+SSQ 
Sbjct: 72  VKEKLFPALMTPLRKLDADDGETRKTLWRLHDGTL-----LESVLMRYPGRATLCISSQA 126

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A   + D           +  +  ++SNI
Sbjct: 127 GCGMACPFCATGQGGLDRNLSVGEIVEQVRNAARAMRD---------GEVAGIEGRLSNI 177

Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V +++   +  +  G   S+R +T+ST G  P I ++ +E + V L
Sbjct: 178 VFMGMGEPLANYKRVVEAVRQITQPEPHGFGISQRNVTVSTVGLAPAIRKLADEDMSVRL 237

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ +E ++DA  +Y   S   R++ EY +++ IND P  A
Sbjct: 238 AVSLHTPDDELRDTLVPVNNRWSVEEVLDAAAYYAEKSGR-RVSIEYALIRDINDQPWRA 296

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L    G    +NLIP NP PG ++  S ++    F + +   G    +R  +G 
Sbjct: 297 DMLGKKLHKALGSKVHVNLIPLNPTPGSKWDASPKERQDEFVQRVIAQGVPCTVRDTKGQ 356

Query: 357 DILAACGQLKSLS 369
           +I AACGQL +  
Sbjct: 357 EIAAACGQLAAEE 369


>gi|269123374|ref|YP_003305951.1| radical SAM enzyme, Cfr family [Streptobacillus moniliformis DSM
           12112]
 gi|268314700|gb|ACZ01074.1| radical SAM enzyme, Cfr family [Streptobacillus moniliformis DSM
           12112]
          Length = 353

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 201/371 (54%), Gaps = 26/371 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  ++ +  +ELE+  L++G+     +    Q+++W++ + + +F   S+IS+E R L
Sbjct: 1   MVKIDILDLSLDELEKMFLELGL----KKFNALQVYQWLHKKLVFNFDEFSNISKETREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L + F I   + V  + S D  T K+L   P + +     IE+V +  K+R ++CVSSQV
Sbjct: 57  LKEKFEIGTLKYVTHQTSKDKETVKFLFSLPGKKL-----IESVLLKYKNRYSICVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C FC TG  K  +NL A EIL+Q    ++ L +                 KISN+
Sbjct: 112 GCPLKCDFCATGMMKFEKNLKASEILMQFYYLQNYLKE--------------KNDKISNV 157

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V MGMGEP  N+D V KS++I +   G +FSKR  T+STSG +  I +  E+   V LAI
Sbjct: 158 VYMGMGEPFLNYDAVNKSINILNSKEGQAFSKRNFTISTSGLINEIDKFVEDQKQVGLAI 217

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+V+   R+ L+PIN+  PL+ L ++  +Y   +   RITFEY+++   N    DA+ 
Sbjct: 218 SLHSVNEKRRSELMPINKINPLDKLRESLLNYQNKT-KNRITFEYILIDDFNCEKEDAVA 276

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+K ++     +NLIP+N   G  Y     +    F   +     +  +R  +G DI AA
Sbjct: 277 LVKFMRSFNHLVNLIPYNKVAGKPYKTPSLQKQKEFYNHLLSHKINVTLRETKGEDIQAA 336

Query: 362 CGQLKSLSKRI 372
           CGQLK   + I
Sbjct: 337 CGQLKVKKEEI 347


>gi|313203119|ref|YP_004041776.1| 23S rRNA m(2)a-2503 methyltransferase [Paludibacter propionicigenes
           WB4]
 gi|312442435|gb|ADQ78791.1| 23S rRNA m(2)A-2503 methyltransferase [Paludibacter propionicigenes
           WB4]
          Length = 350

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/369 (35%), Positives = 194/369 (52%), Gaps = 29/369 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M     ++L G+   +L+  +L +G+P        SQ+  W+Y + + D   M+++S++ 
Sbjct: 1   METHLPKNLFGLTLPQLKAEVLALGLPA----FTASQLADWMYKKRVTDIGSMTNLSKQA 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L Q +S+     V  + S DGT+K+L     +       IE  YIP+K R TLCVS+
Sbjct: 57  REKLQQAYSLHLVPSVSVQTSTDGTKKYLYPTRPQKF-----IEAAYIPDKDRATLCVST 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q+GC + C FC TG Q    NLT  EIL Q                   M       K++
Sbjct: 112 QIGCKMGCLFCMTGKQGFQGNLTTGEILNQ-------------------MQSLPEFDKLT 152

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIV MGMGEPL N   V  S+ + +   G  +S +RIT+ST G +P +    E     LA
Sbjct: 153 NIVYMGMGEPLDNVQAVMDSIEVMTSPWGYDWSPKRITVSTIGIIPAMMTFLENSKAHLA 212

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLH+  +D R  ++PI   YP+  ++   R +  L + RR++FEY+M KG+ND+PR A 
Sbjct: 213 VSLHSPFDDERRDIMPIQSVYPITEVVSNIRRW-ELGSQRRVSFEYIMFKGVNDTPRHAN 271

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+++L GI  +INLI F+P P      +  +DIV F   +K  G +  IR  RG DI A
Sbjct: 272 ELVRLLNGIKCRINLIRFHPIPDTPLEGTALEDIVDFQNRLKAKGLTVTIRASRGEDIFA 331

Query: 361 ACGQLKSLS 369
           ACG L +  
Sbjct: 332 ACGMLSTKE 340


>gi|329936699|ref|ZP_08286406.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
           griseoaurantiacus M045]
 gi|329303929|gb|EGG47812.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
           griseoaurantiacus M045]
          Length = 370

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 181/368 (49%), Gaps = 23/368 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA+  IG        R  Q+ +  + R   D Q  +DI    R  L +
Sbjct: 22  RHLADLSPAERKEAVSAIG----EKPFRAKQLSQHYFARYSHDPQEWTDIPAASRGRLRE 77

Query: 67  HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                   +V       D TRK L R     +     +E+V +    R T+C+SSQ GC 
Sbjct: 78  ALLPELMTVVRHLSTDADTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGCG 132

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EI+ Q++          G   +    IP    ++SNIV M
Sbjct: 133 MNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEIPGGPARLSNIVFM 183

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP I R  +E     LAIS
Sbjct: 184 GMGEPLANYNRVVAAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFTDEGFKCRLAIS 243

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVP+N ++ +  ++DA   Y   S   R++ EY +++ IND       L
Sbjct: 244 LHAPDDELRDTLVPVNTRWKVREVLDAGFEYAARSGR-RLSIEYALIRDINDQAWRGDRL 302

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LKG P  +NLIP NP PG ++  S  +D   F E I   G    +R  RG +I  AC
Sbjct: 303 GRLLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGAC 362

Query: 363 GQLKSLSK 370
           GQL +  +
Sbjct: 363 GQLAATER 370


>gi|327402251|ref|YP_004343089.1| 23S rRNA m(2)A-2503 methyltransferase [Fluviicola taffensis DSM
           16823]
 gi|327317759|gb|AEA42251.1| 23S rRNA m(2)A-2503 methyltransferase [Fluviicola taffensis DSM
           16823]
          Length = 359

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 202/371 (54%), Gaps = 24/371 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            ++  +  EEL+ A++  G P      R  Q+++WI+ + + DF  M++I + ++  L +
Sbjct: 6   INIRNLNLEELKAAIVGFGEPA----FRAKQVYEWIWKKNVHDFNAMANIGKSLQEKLQE 61

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +F      I D++IS D T K          G    +E V IP  +R T C+SSQVGCSL
Sbjct: 62  NFYFDGITIEDQQISVDKTIKCAF----GIEGQSQVVEGVLIPTTNRMTACISSQVGCSL 117

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           +C+FC TG  K++RNL+A EI+ QV+  ++L                     +SNIV MG
Sbjct: 118 SCAFCATGRLKMMRNLSAGEIVDQVVYLKNL-------------ATGKYNTNLSNIVYMG 164

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEPL N+ NV +S+ I +D  GL  S +RIT+ST+G    I ++G++ +   LA+SLHA
Sbjct: 165 MGEPLLNYKNVVRSVDILTDENGLGMSPKRITVSTAGIAKMIRKLGDDDVKFNLALSLHA 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++  R+ ++ IN    L+ L +A   Y       R+TFEY++ K  ND   DA  L   
Sbjct: 225 ANDVKRSKIMDINDTNNLDELSEALL-YFHEKTGSRVTFEYIIFKDFNDGLEDARELADF 283

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAACGQ 364
            K +P KIN+I +NP    EY  +D++ +  F+  ++        +R  RG DI AACGQ
Sbjct: 284 AKVVPCKINIIEYNPIDDGEYQQADRQKVDDFARFLEEKCNLIVNVRRSRGKDIDAACGQ 343

Query: 365 LKSLSKRIPKV 375
           L + +K I K 
Sbjct: 344 LANKNKMIDKR 354


>gi|239928666|ref|ZP_04685619.1| hypothetical protein SghaA1_10605 [Streptomyces ghanaensis ATCC
           14672]
 gi|291436989|ref|ZP_06576379.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339884|gb|EFE66840.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 368

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 124/369 (33%), Positives = 182/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA+   G        R  Q+ +  + R   D +  +DI    R  L +
Sbjct: 20  RHLADLTPAERKEAVAAAG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGSRARLRE 75

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   +S D   TRK L +     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  ALLPELMTVV-RHLSTDQGTTRKTLWKLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPTRLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP I R  +E     LAI
Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFSDEGFKCRLAI 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   R++ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFAYAARSGR-RLSIEYALIRDINDQAWRGDR 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG P  +NLIP NP PG ++  S  +D   F E I   G    IR  RG +I  A
Sbjct: 300 LGRLLKGRPVHVNLIPLNPTPGSQWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAASER 368


>gi|38234081|ref|NP_939848.1| hypothetical protein DIP1502 [Corynebacterium diphtheriae NCTC
           13129]
 gi|81564752|sp|Q6NGK9|RLMN_CORDI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|38200343|emb|CAE50029.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 368

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 119/376 (31%), Positives = 186/376 (49%), Gaps = 31/376 (8%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
            F+  +    +  +E  +AL ++G+P    + R +QI +  Y R   D   M+D+    R
Sbjct: 17  RFMPPKHFADLSADERIDALKELGLP----KFRANQIARHYYGRLEADPSTMTDLPAAAR 72

Query: 62  HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             +         + V    + DG T+K L +     +     +E+V +   +R TLC+SS
Sbjct: 73  EKVKDALFPQLMQPVRAVQADDGETQKTLWKLHDGTL-----LESVLMRYPNRATLCISS 127

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG   L RNL+  EI+ QV  A                 + + G ++S
Sbjct: 128 QAGCGMACPFCATGQGGLDRNLSTGEIVDQVRAA--------------SATMQAEGGRLS 173

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           NIV MGMGEPL N+  V  ++   +     G   S+R +T+ST G  P I ++ +E + V
Sbjct: 174 NIVFMGMGEPLANYKRVVSAVRQITAPVPEGFGISQRNVTVSTVGLAPAIRKLADEDLSV 233

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLH   ++LRN LVP N ++ +  ++DA R+Y   S   R++ EY +++ +ND   
Sbjct: 234 TLAVSLHTPDDELRNTLVPTNNRWEVAEVLDAARYYADRSGR-RVSIEYALIRDVNDQGW 292

Query: 298 DALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            A  L K L    G    +NLIP NP PG ++  S       F + +   G +  +R  R
Sbjct: 293 RADMLGKKLHKALGPLVHVNLIPLNPTPGSKWDASPMDRQKEFVQRVIAQGVTCTVRDTR 352

Query: 355 GLDILAACGQLKSLSK 370
           G +I AACGQL +  +
Sbjct: 353 GQEIAAACGQLAAEER 368


>gi|325105966|ref|YP_004275620.1| 23S rRNA m(2)A-2503 methyltransferase [Pedobacter saltans DSM
           12145]
 gi|324974814|gb|ADY53798.1| 23S rRNA m(2)A-2503 methyltransferase [Pedobacter saltans DSM
           12145]
          Length = 351

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 191/365 (52%), Gaps = 24/365 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  +     E L    +++         R +QI++WI+ +    F  M++IS+++R  L 
Sbjct: 7   KLDIRSFSLENLRSKFIEL----NEKPFRANQIYEWIWKKSATTFDEMTNISKDLRDKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + F I   +I   + S D T K         +     IE V IP   R T CVSSQVGCS
Sbjct: 63  EIFVINAVKINSSQFSSDKTIKNSFILHDTHL-----IEGVLIPTPERMTACVSSQVGCS 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTC FC TG     RNL  +EI  QV+L      +             + G  ++NIV M
Sbjct: 118 LTCKFCATGYMDRKRNLNPDEIYDQVVLIDKQAKE-------------NYGIPLTNIVYM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N+ NV KS+   +   GL+ + +RIT+ST+G    I ++G++ +   LA+SLH
Sbjct: 165 GMGEPLLNYANVLKSIERITSEDGLNMASKRITVSTAGIAKMIKKLGDDNVKFNLALSLH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++  RN ++PIN +  L+ L +A +++   +    +T+EY++    ND   DA  L K
Sbjct: 225 AANDQKRNEIMPINEQNSLQALAEALKYFYAKT-KNPVTYEYIVFNDFNDGIEDARELAK 283

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             K IP K+N+I +NP    ++  + +  I  F+E +++ G ++ IR  RG DI AACGQ
Sbjct: 284 FCKHIPCKVNIIEYNPISFADFANAQEDKIEAFAEHLRKQGVTTNIRRSRGKDIDAACGQ 343

Query: 365 LKSLS 369
           L    
Sbjct: 344 LAVKE 348


>gi|296139393|ref|YP_003646636.1| radical SAM enzyme, Cfr family [Tsukamurella paurometabola DSM
           20162]
 gi|296027527|gb|ADG78297.1| radical SAM enzyme, Cfr family [Tsukamurella paurometabola DSM
           20162]
          Length = 371

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 194/373 (52%), Gaps = 32/373 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +  +EL++A++ +G+P    + R +Q+ +  Y R   D   M+D+    R  + +
Sbjct: 19  RHLADLTDDELQQAVVDLGLP----KFRANQLARHYYGRLEADAATMTDLPASARGTVGE 74

Query: 67  HFSIIYPEIVD--EKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               + PE++     I+ D   TRK L R     +     +E+V +    R TLC+SSQ 
Sbjct: 75  A---LLPELMSPIRHIATDSGTTRKTLWRLHDGTL-----LESVLMRYTDRATLCISSQA 126

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A   + D           +     ++SN+
Sbjct: 127 GCGMACPFCATGQGGLDRNLSTAEIVDQVRSAAKAMQDGD---------VAGGPGRLSNV 177

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V +++   +     GL  S+R +T+ST G  P I ++ +E + V L
Sbjct: 178 VFMGMGEPLANYKRVVQAVRRITSPAPEGLGISQRHVTVSTVGLAPAIRKLADEGLSVTL 237

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ +  ++DA R+Y   +   R++ EY +++ +ND P  A
Sbjct: 238 AVSLHTPDDELRDTLVPVNNRWSVAEVLDAARYYADQTGR-RVSIEYALIRDVNDQPWRA 296

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L + L+   G  A +NLIP NP PG E+  S +     F   +   G S  +R  RG 
Sbjct: 297 DMLGEKLRTKLGQFAHVNLIPLNPTPGSEWDASPKDRQDEFVRRVIAQGVSCTVRDTRGQ 356

Query: 357 DILAACGQLKSLS 369
           +I AACGQL +  
Sbjct: 357 EIAAACGQLAAEE 369


>gi|296123027|ref|YP_003630805.1| radical SAM protein [Planctomyces limnophilus DSM 3776]
 gi|296015367|gb|ADG68606.1| radical SAM enzyme, Cfr family [Planctomyces limnophilus DSM 3776]
          Length = 408

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/364 (32%), Positives = 180/364 (49%), Gaps = 26/364 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           +      EL +   + G+P      R  QI + I+      F  M+++  ++R LL   F
Sbjct: 58  IYEKSPAELVQWCQEQGLPT----YRAGQIQQQIFPNRATQFGEMTNLPAKLRELLAATF 113

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           +++  E+V  +I+ D T K LL+     +     +E V + E  R T+C+S+QVGC + C
Sbjct: 114 TLLPSEVVAHQIAKDRTEKLLLQLHDGSL-----VECVLMREDDRRTICISTQVGCGMGC 168

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC +G   L RNLT  EIL QVL    LL                   K++N+V+MGMG
Sbjct: 169 VFCASGLLGLKRNLTTGEILEQVLRLDRLL---------------PADEKLTNVVVMGMG 213

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EPL N  N+  +L   +   GL    RRIT+ST G    I  + +      LA+SLHA  
Sbjct: 214 EPLANLKNLLPALDRLTADDGLGLGARRITVSTVGLPEKIRELAQTGHQFNLAVSLHAPE 273

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
            +LR  LVP+N+   +E +++A   Y  ++   R+++EYV+L GIND P  A  L  +LK
Sbjct: 274 AELRTKLVPVNKNIGIEAVLEAADDYFAITGR-RVSYEYVLLGGINDLPEHARQLGHLLK 332

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
              A +NLIP N      +          F   ++  G    +R  +G DI AACGQL+ 
Sbjct: 333 SRIAHVNLIPMNGVKELPFAEPSAPQTGEFVAILESFGVPVTVRKRKGADIDAACGQLRM 392

Query: 368 LSKR 371
             ++
Sbjct: 393 KREQ 396


>gi|113955511|ref|YP_731551.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
           CC9311]
 gi|123132407|sp|Q0I7M1|RLMN_SYNS3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|113882862|gb|ABI47820.1| radical SAM enzyme, Cfr family protein [Synechococcus sp. CC9311]
          Length = 346

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 188/370 (50%), Gaps = 37/370 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN-QH 67
           L+G  + ELEE  +  G P      R  Q+  W+Y +G+RD QG++ + +  R  L  + 
Sbjct: 5   LLGRSKSELEEWAVAQGQPA----FRGRQLHDWLYAKGVRDLQGITVLPKAWRASLQNEG 60

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            S+      + ++S D T K LL            +ETV IP   R T+CVSSQVGC + 
Sbjct: 61  VSVGRLHEQERRVSADATTKLLLGTED-----GETLETVGIPTDQRLTVCVSSQVGCPMA 115

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG   L R+L   EI+ QVL  R ++                  R+ S++V MGM
Sbjct: 116 CRFCATGKGGLQRSLAGHEIVAQVLSIREVM-----------------ERRPSHVVFMGM 158

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240
           GEPL N + V +S+   +D   L   +RRIT+ST G    + R+ +            LA
Sbjct: 159 GEPLLNIEAVLESIRCLNDD--LGIGQRRITVSTVGVPHTLPRLADLALKQLGRAQFTLA 216

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +  LR  L+P  + YP + L+D CR+Y   +   R++FEY++L G+ND P  A 
Sbjct: 217 VSLHAPNQALREELIPTAKTYPYDALLDDCRYYLNKTGR-RVSFEYILLGGVNDHPHHAS 275

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L   + G  + +NLI +NP    E+     + I  F   ++R G +  +R  RGLD  A
Sbjct: 276 ELADRVGGFQSHVNLIAYNPIEEEEFQRPTTQRIEGFRRVLERRGVAVSLRASRGLDQDA 335

Query: 361 ACGQLKSLSK 370
           ACGQL+   +
Sbjct: 336 ACGQLRRNRR 345


>gi|257785159|ref|YP_003180376.1| radical SAM enzyme, Cfr family [Atopobium parvulum DSM 20469]
 gi|257473666|gb|ACV51785.1| radical SAM enzyme, Cfr family [Atopobium parvulum DSM 20469]
          Length = 372

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 112/361 (31%), Positives = 177/361 (49%), Gaps = 28/361 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L  +  E++ + +  +G P    + R  QI +WI+ +G   F  MS++ + +R  L+
Sbjct: 32  KSDLRSLSSEQILDLVTSLGQP----KFRAKQIEEWIWSKGATSFDQMSNLPKTLREELS 87

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +   +   E V  ++S DG+RK+LLR+P         +E V +P  ++ ++C S+Q GC+
Sbjct: 88  KQVILAGAEQVVRQVSEDGSRKYLLRYPD-----GTSVECVGMPNGNKLSVCASTQAGCA 142

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TG   L R+L+A EI  QV+  R                      +++++V+M
Sbjct: 143 MGCAFCATGASGLTRSLSASEIYEQVMHVRD-----------------DFDTRVTSVVLM 185

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           G GEP  N+D    ++   +   G     R IT+ST G +P I R   E     LA+SLH
Sbjct: 186 GQGEPFMNYDATLTAMRRLNSPDGAGIGARHITVSTCGVIPMIKRFASEPEQFTLAVSLH 245

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +     R+ L+P  RKY L  L D    Y   +   R T+EY ++KG+NDS  +   L  
Sbjct: 246 SAVQKTRDALMPGVRKYSLIHLYDIMGEYVDKTGR-RPTYEYALIKGVNDSDNELGALRD 304

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             +G    +N+I  N   G ++  +       F   +   G  + IR  RG DI AACGQ
Sbjct: 305 FCRGTLCHVNIIQLNEIEGSKFHPTSPARAQEFVNSLNSVGVEATIRLSRGSDIDAACGQ 364

Query: 365 L 365
           L
Sbjct: 365 L 365


>gi|34541648|ref|NP_906127.1| ribosomal RNA large subunit methyltransferase N [Porphyromonas
           gingivalis W83]
 gi|81416860|sp|Q7MTB0|RLMN_PORGI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|34397966|gb|AAQ67026.1| conserved hypothetical protein TIGR00048 [Porphyromonas gingivalis
           W83]
          Length = 341

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 133/359 (37%), Positives = 190/359 (52%), Gaps = 30/359 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+GM  EEL    L++G+P    R    Q+ +WIYVR   DF  M++ISQ  R  L + +
Sbjct: 2   LLGMSLEELTTVALRMGMP----RFAGKQLAEWIYVRRATDFAEMTNISQANRQKLAEIY 57

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            +      D + S DGT+K+L       +G    +E+V IPE  R TLC+SSQVGC + C
Sbjct: 58  DLGRYPWSDVQCSVDGTKKYLF-----PVGEGRFVESVLIPEGDRATLCISSQVGCKMDC 112

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG Q    NL+A EIL Q+                          +++N+V MGMG
Sbjct: 113 LFCMTGKQGWNGNLSAAEILNQIFSV-------------------DEAAELTNLVYMGMG 153

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EPL N D V +S+   ++  G+ +S +RIT+ST G    + R   E    LA+SLH+   
Sbjct: 154 EPLDNTDEVLRSIEALTEPWGMGWSPKRITVSTIG-AKGLERFLAESRCHLAVSLHSPFP 212

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           + R  L+P  + +P+   +D  R Y   S  RR++FEY++  G+ND  R A  L  IL+G
Sbjct: 213 EERRKLMPGEKAFPIMQTLDRIRAY-DFSGQRRVSFEYIVFDGLNDDMRHADELAAILRG 271

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           IP +INLI F+  P      SD   +  F + ++  G++  IR  RG DI AACG L +
Sbjct: 272 IPCRINLIRFHKIPAVSLRSSDTARMEAFRKRMESHGFTCTIRASRGEDIFAACGMLST 330


>gi|325108721|ref|YP_004269789.1| 23S rRNA m(2)A-2503 methyltransferase [Planctomyces brasiliensis
           DSM 5305]
 gi|324968989|gb|ADY59767.1| 23S rRNA m(2)A-2503 methyltransferase [Planctomyces brasiliensis
           DSM 5305]
          Length = 358

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/383 (33%), Positives = 201/383 (52%), Gaps = 27/383 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M+   K S++ +    LE    + G P    R R  QI++WIY R  + ++ M+D+  ++
Sbjct: 1   MSSDAKPSVLSLDLPALETWCAENGQP----RFRAEQIFRWIYARRAQSWEEMNDLPAKL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L + FS+   E+    ++ D T K LL+           +E V + E  R T+C+S+
Sbjct: 57  RTALAEQFSLFNSEVETHSVATDRTEKLLLKLRD-----GEFVECVLMREPDRNTICIST 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC +G   L RNL   EIL QV     L  D                 K++
Sbjct: 112 QVGCGMGCVFCASGLAGLTRNLQTAEILEQVARLDRLQSD---------------DEKLT 156

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
           N+V+MGMGEPL N   +  +L     ++GL+   RRIT+ST G    I ++        L
Sbjct: 157 NVVVMGMGEPLANLKQLLPALERMQHALGLNLGVRRITVSTVGLPDRIRQLAAHGKPYNL 216

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA ++ LR+ +VP+N K  L+ ++ A   Y   +  RR+T+EYV+LKGINDS   A
Sbjct: 217 AVSLHAPNDKLRDEIVPVNDKIGLDAVLSAADEYFE-TTGRRVTYEYVLLKGINDSLEHA 275

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++L G  A +NLIP N         S  +    F+  ++++G ++ IR  +G DI 
Sbjct: 276 HELAEVLAGRNAHVNLIPMNAVSLLSIGGSSPQQARQFAAILEQAGTAATIRKRKGADID 335

Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381
           AACGQL+    +++P V + +++
Sbjct: 336 AACGQLRLPKVQQMPDVQQLKVK 358


>gi|251799946|ref|YP_003014677.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
 gi|247547572|gb|ACT04591.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
          Length = 356

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 204/377 (54%), Gaps = 27/377 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +   S+ G   ++L   L + G    H + R +Q+W+++Y + +  F  M+D+  +   L
Sbjct: 1   MSTASIYGFTLDQLTAWLGERG----HKKFRATQVWEYLYRKRVTSFADMTDVHPDCVKL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L ++++I       +++S DGT K LL+     +     IETV +  K   ++CV++QVG
Sbjct: 57  LEENYAIQTLVEHTKQVSKDGTVKLLLKLDDGNL-----IETVMMRHKFGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ CSFC +G  K  R+LT+ EI+ Q++  +  L +               G K+S+IV
Sbjct: 112 CNIGCSFCASGLLKKSRDLTSGEIVEQIMKIQLHLDE------------SGQGEKVSHIV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242
           +MG+GEP  NF ++   L+   D  GL+   R IT+STSG    I    ++   V LA+S
Sbjct: 160 VMGIGEPFDNFIHLNDFLTTVKDHKGLAIGPRHITVSTSGLADKIREFADKDQGVNLAVS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR  ++ INR  P+E L+DA  +Y   +N  RIT EY++LK +ND P  AL L
Sbjct: 220 LHAPNNELRTRIMKINRAIPIEKLMDAIDYYLERTNR-RITLEYILLKDVNDQPEHALEL 278

Query: 303 IKIL---KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
            +++   +     +NLIP+NP     +Y  S+   I  F + +K+   S  +R   G DI
Sbjct: 279 AELVGDRRRSLVNVNLIPYNPVDEHSQYQRSENDSIKGFYDTLKKQDVSVSVRLEHGADI 338

Query: 359 LAACGQLKSLSKRIPKV 375
            AACGQL+S      K 
Sbjct: 339 DAACGQLRSKQMNKEKA 355


>gi|329962041|ref|ZP_08300052.1| 23S rRNA m2A2503 methyltransferase [Bacteroides fluxus YIT 12057]
 gi|328530689|gb|EGF57547.1| 23S rRNA m2A2503 methyltransferase [Bacteroides fluxus YIT 12057]
          Length = 346

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 194/373 (52%), Gaps = 29/373 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+ L+G+   EL+  +  +G+P         QI  W+Y + +     M+++S + R  
Sbjct: 1   MQKQPLLGLTLSELQSVVKNLGMPG----FAARQIASWLYDKKVTSIDEMTNLSLKHREY 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L   + +     VD   S DGT K+L +      G    +E VYIP++ R TLCVSSQVG
Sbjct: 57  LKDAYEVGAAAPVDAMRSIDGTVKYLYQ-----AGEGHFVEAVYIPDEDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                          K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTANLTANQIINQI-------------------SSLPERDKLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L I + S G S+S +RITLS+ G    + R  EE    LA+SL
Sbjct: 153 MMGMGEPLDNLDEVLKALEIMTASYGYSWSPKRITLSSVGLRKGLQRFIEESDCHLAVSL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H      R  L+P  + + +  +++  R+Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HTPVPLQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  +INLI F+  PG     +D + + T  + +   G  + IR  RG DI AACG
Sbjct: 272 KLLRGLDCRINLIRFHAIPGVGLEGADMETMTTLRDYLTSHGLFTTIRASRGEDIFAACG 331

Query: 364 QLKSLSKRIPKVP 376
            L +  +   K  
Sbjct: 332 MLSTAKQEENKQE 344


>gi|262066381|ref|ZP_06025993.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC
           33693]
 gi|291379946|gb|EFE87464.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC
           33693]
          Length = 358

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 204/380 (53%), Gaps = 34/380 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN  +K +++ + +EEL E L+ +G+     +    +++ W++ + IR+F  M+++S + 
Sbjct: 1   MNN-EKINILNLTQEELTEFLVSLGL----KKFYGKEVFIWLHKKIIRNFDDMTNLSLKD 55

Query: 61  RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113
           R +L ++  I +  ++  ++S  D T K+L     +       IETV +  +       R
Sbjct: 56  REILKENAYIPFFNLLKHQVSKLDKTEKFLFELEDKGT-----IETVLLRHRDSKNKEIR 110

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            TLCVSSQVGC + CSFC TG    +RNL+  EIL QV                    + 
Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVER--------------RLR 156

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232
                ++N+V MGMGEPL N DN+  +LSI S+  G++ SKR+IT+STSG VP I + + 
Sbjct: 157 KKDESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKITISTSGVVPGIEKILL 216

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E+I + LA+SLH+  N+ R+ ++PIN+ +PLE L      Y   +   RITFEY+++   
Sbjct: 217 EKIPIELAVSLHSAINEKRDQIIPINKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNF 275

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351
           N S  DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R
Sbjct: 276 NISEVDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSMKKIERFYNYLKNVRKVNVTLR 335

Query: 352 TPRGLDILAACGQLKSLSKR 371
             +G DI  ACGQL+  +K+
Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355


>gi|159036879|ref|YP_001536132.1| radical SAM protein [Salinispora arenicola CNS-205]
 gi|205829873|sp|A8M6B6|RLMN_SALAI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157915714|gb|ABV97141.1| radical SAM enzyme, Cfr family [Salinispora arenicola CNS-205]
          Length = 380

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 115/370 (31%), Positives = 177/370 (47%), Gaps = 23/370 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +    L  +     +  + ++G P    R R  Q+    + R +RD   M+D+    R  
Sbjct: 20  MPPRHLADLDLAGRQALVAELGEP----RFRARQVSTHYFGRLVRDSGQMTDLPAAAREK 75

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L           V E    DG T K L R     +     +E+V +    R T C+SSQ 
Sbjct: 76  LTDRLLPTLLTPVRELTCDDGATHKALWRLHDGSL-----VESVLMGYPDRVTACLSSQA 130

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ Q +                   +     ++S +
Sbjct: 131 GCGMACPFCATGQAGLTRNLSTAEIVDQAVYL---------AGVAASGAVAGSPPRLSRV 181

Query: 183 VMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEPL N++ V  ++         GL  S+R +T+ST G VP I R+  E++ V L
Sbjct: 182 VFMGMGEPLANYNRVVAAIRRLVAPAPEGLGLSQRHVTVSTVGLVPAIRRLASEDLSVTL 241

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  + LR+ LVP+N+++ +  +++    Y   +   R++ EY M+K +ND P  A
Sbjct: 242 ALSLHAPDDGLRDELVPVNQRWKVSEVLETAWEYAARTGR-RVSIEYAMIKDVNDQPWRA 300

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L ++L G  A +NLIP NP PG  +  S +     F   ++ +G S+ +R  RG +I 
Sbjct: 301 DLLGRLLAGKLAHVNLIPLNPTPGSRWDASPKPVEREFVRRLRDAGVSTTVRDTRGREID 360

Query: 360 AACGQLKSLS 369
            ACGQL +  
Sbjct: 361 GACGQLAAAE 370


>gi|289548506|ref|YP_003473494.1| radical SAM enzyme, Cfr family [Thermocrinis albus DSM 14484]
 gi|289182123|gb|ADC89367.1| radical SAM enzyme, Cfr family [Thermocrinis albus DSM 14484]
          Length = 347

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/365 (35%), Positives = 206/365 (56%), Gaps = 33/365 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           ++G   EEL E ++ +G+     R R  QI  W+Y +G+ DF  M++IS+  R +L + F
Sbjct: 4   ILGYTLEELREEVVSLGLE----RYRADQILNWVYKKGVTDFSLMTNISKRDRQVLAERF 59

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           S    +++D+  + D + K+L +           +ETV I E+   TLCVSSQVGC++ C
Sbjct: 60  SFHTLQMIDKVEAPD-SVKYLFKTED-----GHTVETVLIKERDHLTLCVSSQVGCAVGC 113

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
           SFC T    L+RNL  EEI+ Q +  +                     ++I N+V MGMG
Sbjct: 114 SFCATARDGLLRNLRTEEIIDQFIQVQK-----------------DSPQRIRNVVFMGMG 156

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHA 245
           EPL N++NV+K++ +     GL  SKRR+++STSG +  + ++ ++     + LA+S++A
Sbjct: 157 EPLANYENVRKAVKVMISPWGLDLSKRRVSVSTSGIISQLKKMAQDPVMRELNLAVSINA 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            S +LR  ++PI++  PL  L++    YP     RRI  EYV+++ +ND P  AL L ++
Sbjct: 217 PSQELRERIMPISKTNPLHELMEVLYQYPY-PPDRRIMLEYVLIEKVNDEPEHALQLAQL 275

Query: 306 LKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           LKG P   K+NLIP+NP P   Y     + +  F + +  +G S+ +R  +G+ +  ACG
Sbjct: 276 LKGNPKKFKVNLIPYNPDPELPYRRPPLERVYRFQKILWDNGISTFVRFSKGVQVFGACG 335

Query: 364 QLKSL 368
           QL+S 
Sbjct: 336 QLRSR 340


>gi|171742890|ref|ZP_02918697.1| hypothetical protein BIFDEN_02007 [Bifidobacterium dentium ATCC
           27678]
 gi|171278504|gb|EDT46165.1| hypothetical protein BIFDEN_02007 [Bifidobacterium dentium ATCC
           27678]
          Length = 393

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 190/375 (50%), Gaps = 28/375 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L    M  +E      ++G+P    R R  Q+    Y     D +  SD     R  
Sbjct: 38  KPPLHFADMSEDERIAKAKELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAE 93

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
             + F       V  +++ +GT  K L R     +     IE+V +   +R TLC+SSQV
Sbjct: 94  AAEAFFPTLITEVTRQVADEGTTIKTLWRLFDGSL-----IESVLMRYPTRTTLCISSQV 148

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++A EI+ QV +A   + D           +     ++SNI
Sbjct: 149 GCGMGCPFCATGKLGLTRNMSAGEIVEQVRVAAKAMRD---------GEVAGGPGRLSNI 199

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+ +V  ++   S     G   S R IT+ST G VP I ++  E I V L
Sbjct: 200 VFMGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 259

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++    ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 260 AVSLHAPSDELRDELVPMNKRFDTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 318

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G ++  S  +D   F + + ++G ++ +R  RG 
Sbjct: 319 RLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQ 378

Query: 357 DILAACGQLKSLSKR 371
           DI  ACGQL +  ++
Sbjct: 379 DIDGACGQLAAKERQ 393


>gi|111023545|ref|YP_706517.1| hypothetical protein RHA1_ro06586 [Rhodococcus jostii RHA1]
 gi|123144166|sp|Q0S277|RLMN_RHOSR RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|110823075|gb|ABG98359.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 369

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 191/374 (51%), Gaps = 28/374 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +  + L  +   E  EA+ ++G+P      R  Q+ +  Y R   D + M+D+   VR  
Sbjct: 16  MPPKHLADLDSAERREAVKELGLPG----FRADQLARQYYARLEADPEKMTDLPAAVREQ 71

Query: 64  LNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           +           V + ++CDG  TRK L +     +     +E+V +    R TLC+SSQ
Sbjct: 72  VGAALFPTLLTPV-KHLACDGGDTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQ 125

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   L RNL+  EI+ QV  A + L D           +     ++SN
Sbjct: 126 AGCGMACPFCATGQGGLQRNLSTAEIVDQVRAAAAALRDGD---------VHGGPGRLSN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           +V MGMGEPL N+  V  ++   +     GL  S+R +T+ST G  P I ++ +E + V 
Sbjct: 177 VVFMGMGEPLANYKRVVAAVRRITSPAPDGLGLSQRSVTVSTVGLAPAIRKLADEDLSVT 236

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLH   ++LR+ LVP+N ++ +  ++DA R+Y   S   R++ EY +++ +ND P  
Sbjct: 237 LAVSLHTPDDELRDTLVPVNNRWSVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQPWR 295

Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           A  L K L+   G    +NLIP NP PG E+  S +     F   +   G S  +R  RG
Sbjct: 296 ADLLGKKLRKALGPLVHVNLIPLNPTPGSEWDASPKPVEKEFVRRVLAQGVSCTVRDTRG 355

Query: 356 LDILAACGQLKSLS 369
            +I AACGQL + +
Sbjct: 356 QEIAAACGQLAAEN 369


>gi|323699795|ref|ZP_08111707.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. ND132]
 gi|323459727|gb|EGB15592.1| radical SAM enzyme, Cfr family [Desulfovibrio desulfuricans ND132]
          Length = 348

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/363 (36%), Positives = 197/363 (54%), Gaps = 22/363 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +LI + + +LE  + +     +  R R  QIW+W++ + +RD + M+++S+ +R  L  
Sbjct: 2   HNLIELNKTDLEAFVAE---DLKEPRYRAEQIWQWLWQKRVRDVEAMTNLSRPLREKLAG 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             +I++PEI     S DGT K+LL+     +     IETV IP + R + C+S+QVGC++
Sbjct: 59  MANIVWPEIARVAESRDGTIKFLLKLVDGKL-----IETVLIPMQDRYSQCLSTQVGCAM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG     RNLT  EI+ Q+L+ R  L D    E             + N+V MG
Sbjct: 114 ACTFCNTGKLGFERNLTYGEIMGQILVGRQYLADRNMNE-------------LKNLVFMG 160

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N + + + L+      GLS S RR  +ST GF   +  +G+    + AISLHA 
Sbjct: 161 MGEPLLNLETLVRVLTDLPCERGLSLSWRRSMVSTVGFPDKLKILGDLEIALPAISLHAP 220

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           + +LR  ++P   +  L+ L+ A   YP +    RITFEY++LK +NDS   A  L K++
Sbjct: 221 TQELRARIMPKAARVHLDDLMAALSAYP-MRPRERITFEYLLLKDVNDSMEHADQLAKLI 279

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
                KINLI +N   G  Y   D+  +  F + +   G ++ IR   G DI AACGQLK
Sbjct: 280 DRRKGKINLIAYNATEGMPYGAPDRDRVEAFEKRLWDHGLTAFIRRSMGADIKAACGQLK 339

Query: 367 SLS 369
           + S
Sbjct: 340 ADS 342


>gi|312143909|ref|YP_003995355.1| radical SAM enzyme, Cfr family [Halanaerobium sp. 'sapolanicus']
 gi|311904560|gb|ADQ15001.1| radical SAM enzyme, Cfr family [Halanaerobium sp. 'sapolanicus']
          Length = 347

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/363 (36%), Positives = 197/363 (54%), Gaps = 24/363 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L  + R EL + L   G P      R  Q++ W+Y  GI + + M +I  E++  LN 
Sbjct: 2   KDLKELKRNELIKELKNAGFPA----YRGEQVFNWLYKNGISETEKMKNIPGELKEYLND 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGC 124
           ++ I   +   +  + DGT K+L             IE VY+P     R + C+S+QVGC
Sbjct: 58  NYEITDLKEKAKSQAADGTIKYLWELKD-----GENIEGVYLPFPESARHSACISTQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L CSFC TG   L RNLT  EI+ QVL  ++ +      E            ++SNIV 
Sbjct: 113 GLGCSFCATGINGLERNLTTAEIIDQVLKIQADISRDEFAEP-----------RLSNIVF 161

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MGMGEPL NF+N+ +++ I +   GL+   R++T+ST G VP I ++ +    + LA+SL
Sbjct: 162 MGMGEPLANFENLMQAVEIINSDNGLNIGMRKMTISTVGLVPEIKKLADRNDQIGLAVSL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++ LRN ++PIN+KY L  L+ A   Y   +   R+TFEYV++  +NDSP  A+ L+
Sbjct: 222 HAPNDRLRNKIMPINKKYNLNQLLTAVIDYIEKTGR-RVTFEYVLMDSVNDSPELAVQLV 280

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L+GI   +NLIP NP P        QK I +F   +  +G    +R   G  I AACG
Sbjct: 281 ELLRGINCHVNLIPANPVPELNIKKPVQKVIDSFYSTLDNNGIQVSLRREMGSQIDAACG 340

Query: 364 QLK 366
           QLK
Sbjct: 341 QLK 343


>gi|330752186|emb|CBL87145.1| radical SAM superfamily protein, UPF0063 [uncultured Flavobacteria
           bacterium]
          Length = 349

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 190/367 (51%), Gaps = 23/367 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK  + G+ +E + E              R  Q+++W++ +    F  M+++S   R LL
Sbjct: 4   KKRDIRGLSQEAIIEFFEAH----NEQSFRAKQVYQWLWQKSASSFDEMTNLSISTRALL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N +F+    E+   + S DGT K  ++           +E+V IP + R T CVSSQVGC
Sbjct: 60  NANFNFNLLEVDLMQRSKDGTIKNAVKLHDGAF-----VESVLIPTEKRITACVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C+FC T + K +RNL  +EI  QV++  +   ++              GR ++NIV 
Sbjct: 115 SLDCTFCATASLKRMRNLGPDEIYDQVVVIHNQGKEY-------------FGRPLTNIVF 161

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N++NV  ++   +D  GL  S RRITLST G    I R+ ++ +   LAISL
Sbjct: 162 MGMGEPLLNYNNVLAAIEKITDPKGLGLSPRRITLSTIGVPKLIKRMADDGVKFNLAISL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+   + R  L+P+  K    + +     Y      R +TFEYV+ K +ND+ +D   L 
Sbjct: 222 HSAIEEKRAKLMPLAHKSATLVDLRESLQYWYAKTGRGVTFEYVIWKDLNDTEQDVKALA 281

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K    IP K+N+I +NP     Y  + Q+ +  + E ++  G  + IR  RG DI AACG
Sbjct: 282 KFCGAIPTKVNIIQYNPIDNGPYTQASQEAVNMYKETLESKGIITTIRHSRGQDIDAACG 341

Query: 364 QLKSLSK 370
           QL +  +
Sbjct: 342 QLANKVE 348


>gi|317505349|ref|ZP_07963277.1| cfr family radical SAM enzyme [Prevotella salivae DSM 15606]
 gi|315663563|gb|EFV03302.1| cfr family radical SAM enzyme [Prevotella salivae DSM 15606]
          Length = 348

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 199/379 (52%), Gaps = 31/379 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN   K++L+GM   EL+EA   +G+P         QI KW+Y   ++    M++IS+  
Sbjct: 1   MNS-PKKALLGMTLYELKEACRALGMPA----FTGGQIAKWMYTHHVKQIDEMTNISKNN 55

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L + ++I   E +D + S DGT K+L             +ETVYIPE  R TLCVS 
Sbjct: 56  RAKLAEAYTIGCNEAIDAQHSKDGTIKYLFPTHDGKF-----VETVYIPENDRATLCVSC 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC TG Q    +LT  +IL QV     +                    K++
Sbjct: 111 QVGCKMNCLFCQTGKQGFEGSLTTTDILNQVYSLPEVD-------------------KLT 151

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIV MG GEP+ N DN+ ++  I +   G ++S +RIT+S+ G    + R  EE    +A
Sbjct: 152 NIVFMGQGEPMDNLDNILRTTEILTADYGWAWSPKRITVSSVGVKNKLKRFLEESNCHVA 211

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLH+   + R  L+P  +   +  ++   R+Y   S+ RR++FEY++  GINDS   A 
Sbjct: 212 ISLHSPIAEQRAALMPAQKGMSISEIVSLLRNY-DFSHQRRLSFEYIVFGGINDSTTHAR 270

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            ++K+L G+  ++NLI F+  PG     +D+K +    + +      + IR  RG DI A
Sbjct: 271 EIVKLLNGLDCRVNLIRFHQIPGVPLHGADEKRMEELRDYLTSHDVFTTIRASRGQDIFA 330

Query: 361 ACGQLKSLSKRIPKVPRQE 379
           ACG L S SK+I ++  ++
Sbjct: 331 ACGLL-STSKKIGEIRHEQ 348


>gi|257055048|ref|YP_003132880.1| ribosomal RNA large subunit methyltransferase N [Saccharomonospora
           viridis DSM 43017]
 gi|256584920|gb|ACU96053.1| radical SAM enzyme, Cfr family [Saccharomonospora viridis DSM
           43017]
          Length = 370

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 187/373 (50%), Gaps = 23/373 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L +  L  +   E  EA++ +G        R  Q+    + R   D + M+DI    R  
Sbjct: 12  LPRRHLADLTVTERAEAVVALG----EKPFRAKQLSHHYFSRLTVDPEAMTDIPAASRRR 67

Query: 64  LNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L           V   + CDG  TRK L R     +     +E+V +    R TLC+SSQ
Sbjct: 68  LVDELMPPLLTQV-RAVDCDGGSTRKTLWRAHDGTL-----VESVLMRYPDRATLCISSQ 121

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   L RNL+  EI+ QV  A +++ D      + G        ++SN
Sbjct: 122 AGCGMACPFCATGQGGLTRNLSTAEIVDQVRAAAAVMRDGL----MPGPDGAPKPGRLSN 177

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEPL N+  V  ++   +D    GL  S+R +T+ST G  P I ++ +E + V 
Sbjct: 178 IVFMGMGEPLANYKRVLAAVRRITDPPPAGLGISQRSVTVSTVGLAPAIRKLADEGLQVR 237

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLH   ++LR+ LVP+N ++ ++ ++ A R+Y   +   R++ EY +++ IND P  
Sbjct: 238 LAVSLHTPDDELRDELVPVNNRWSVDEVLRAARYYADRTGR-RVSIEYALIRDINDQPWR 296

Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           A  L K L+   G    +N+IP NP PG ++  S +     F   +   G +  +R  RG
Sbjct: 297 ADLLAKRLREHLGQLVHVNVIPLNPTPGSKWDASPKPVEREFVRRVNAGGVACTVRDTRG 356

Query: 356 LDILAACGQLKSL 368
            +I AACGQL + 
Sbjct: 357 QEIAAACGQLAAE 369


>gi|221195097|ref|ZP_03568153.1| radical SAM enzyme, Cfr family [Atopobium rimae ATCC 49626]
 gi|221185000|gb|EEE17391.1| radical SAM enzyme, Cfr family [Atopobium rimae ATCC 49626]
          Length = 361

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 182/368 (49%), Gaps = 28/368 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L  +   E+ E +  +G P    + R  Q+  W++ +G   F  MS++ + +R  L 
Sbjct: 21  KRGLKTLSHAEIVELVENLGQP----KFRAKQLEDWMWSKGATSFDQMSNLPKSLRAGLA 76

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  S      V  ++S DG+RK+LL++P       V +E V +P  ++  +C S+Q GC+
Sbjct: 77  KTVSFQSITQVTRQLSQDGSRKYLLQYPDN-----VCVECVGMPTGNKLAVCASTQAGCA 131

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TG   L R+L+A EI  QVL  R+                     ++S++V M
Sbjct: 132 MGCAFCATGAAGLTRSLSASEIYDQVLHIRN-----------------DFEMRVSSVVFM 174

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           G GEP  N+DN  ++L + +   GL    R +T+ST G +P I R   E     LA+SLH
Sbjct: 175 GQGEPFMNYDNALEALRLLNSPHGLGIGARHLTISTCGVIPMIKRFANEPEQFTLAVSLH 234

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +     R+IL+P  RKY L  L D    Y   +   R T+EY ++ GINDS  +   L  
Sbjct: 235 SAVQKTRDILMPGVRKYSLLHLYDIMGEYVEKTGR-RPTYEYALIGGINDSENELGALRD 293

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             +G  A +NLI  N  PG ++  S       F   +   G  + IR  RG DI AACGQ
Sbjct: 294 FCRGTLAHVNLIQLNEIPGSKFHPSTPARAQQFVTKLGEVGVEATIRISRGADIDAACGQ 353

Query: 365 LKSLSKRI 372
           L    +++
Sbjct: 354 LSQKLRQL 361


>gi|226306037|ref|YP_002765997.1| rRNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|259491995|sp|C0ZY23|RLMN_RHOE4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|226185154|dbj|BAH33258.1| putative rRNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 369

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 187/373 (50%), Gaps = 26/373 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +    L  +   E +EA+ ++G+P      R  Q+ +  Y R   D + M+D+   VR  
Sbjct: 16  MPPRHLADLDSAERKEAVKELGLPA----FRADQLARQYYARLEADPEKMTDLPASVREK 71

Query: 64  LNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           + +  F  +   I         TRK L +     +     +E+V +    R TLC+SSQ 
Sbjct: 72  VGESLFPTLLTPIKHLACDSGDTRKTLWKAHDGTL-----LESVLMRYPDRATLCISSQA 126

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A + + D           +     ++SN+
Sbjct: 127 GCGMACPFCATGQGGLDRNLSTAEIVDQVREAAAAMRDGD---------VAGGPGRLSNV 177

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V  ++   +     GL  S+R +T+ST G  P I ++ +E + V L
Sbjct: 178 VFMGMGEPLANYKRVVAAVRRITSPAPDGLGLSQRSVTVSTVGLAPAIRKLADEGLSVTL 237

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ +  ++ A R+Y   +   R++ EY M+K +ND P  A
Sbjct: 238 AVSLHTPDDELRDTLVPVNNRWSVSEVLQAARYYADKTGR-RVSIEYAMIKNVNDQPWRA 296

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K LK   G    +NLIP NP PG E+  S +     F   +   G S  +R  RG 
Sbjct: 297 DMLGKKLKKALGGLVHVNLIPLNPTPGSEWDASPKDVEREFVRRVIAQGVSCTVRDTRGQ 356

Query: 357 DILAACGQLKSLS 369
           +I AACGQL + +
Sbjct: 357 EIAAACGQLAAEN 369


>gi|182415989|ref|YP_001821055.1| radical SAM protein [Opitutus terrae PB90-1]
 gi|205829654|sp|B2A0B9|RLMN3_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 3;
           AltName: Full=23S rRNA m2A2503 methyltransferase 3
 gi|177843203|gb|ACB77455.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1]
          Length = 374

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/379 (33%), Positives = 198/379 (52%), Gaps = 26/379 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L G   E L   L + G P      R SQI  W+Y +  R + GM+++ + +R  L+
Sbjct: 7   KPPLTGETLESLTARLRERGEPA----FRASQILDWVYKKRARSWDGMTNLPKPLRTWLD 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--------EKSRGTLC 117
             F ++   +V  K S D T K LL      +     IETV I         + SR T+C
Sbjct: 63  DTFDLMPATLVLNKQSADVTDKLLLELRDGSL-----IETVIIRAPQEGVGQDHSRKTIC 117

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +S+QVGC++ C FC +G   L R+L+A EI+ Q+L              +E         
Sbjct: 118 ISTQVGCAMGCVFCASGLAGLKRDLSAGEIVAQLLQVCYREDALTPRAHMELASFD---- 173

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
              NIV+MGMGEPL N+D + ++L+I +   GL F  RRIT+STSG VP I ++ +E +G
Sbjct: 174 ---NIVVMGMGEPLANYDALIRALTILNADWGLGFGARRITVSTSGLVPKILQLADEPLG 230

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LAISLH  ++++R  ++P+N+ +PL  L+ A + +        IT E++++ G+NDS 
Sbjct: 231 FRLAISLHGATDEVREKIMPVNKAFPLAKLLPAVKAFSEKHGRM-ITLEFILIDGVNDSL 289

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L  I   + A +NLIP+N   G  +          F++ ++    S  +R  +G 
Sbjct: 290 EQAEKLRDIALDLHAHVNLIPYNTVEGLAWKRPSITRQERFADVLRARRVSVTLRREKGH 349

Query: 357 DILAACGQLKSLSKRIPKV 375
           DI AACGQL+  +++  +V
Sbjct: 350 DIDAACGQLRLKTEKERQV 368


>gi|293370817|ref|ZP_06617362.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CMC 3f]
 gi|298481513|ref|ZP_06999705.1| radical SAM enzyme, Cfr family [Bacteroides sp. D22]
 gi|292634033|gb|EFF52577.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CMC 3f]
 gi|295086976|emb|CBK68499.1| 23S rRNA m(2)A-2503 methyltransferase [Bacteroides xylanisolvens
           XB1A]
 gi|298272377|gb|EFI13946.1| radical SAM enzyme, Cfr family [Bacteroides sp. D22]
          Length = 344

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 198/367 (53%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     VDE  S DGT K+L +     +G    +E+VYIP+  R TLCVSSQVG
Sbjct: 57  LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                          K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI-------------------HSLPERDKLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L + + + G ++S +RITLST G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R  L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +D   +  F + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKSLSK 370
            L +  +
Sbjct: 332 MLSTAKQ 338


>gi|255568836|ref|XP_002525389.1| catalytic, putative [Ricinus communis]
 gi|223535352|gb|EEF37027.1| catalytic, putative [Ricinus communis]
          Length = 861

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 139/364 (38%), Positives = 202/364 (55%), Gaps = 27/364 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG---IRDFQGMSDISQEVRH 62
           K  L GM   ELE+ +   G       M    +WK +Y         F  +  ++++ + 
Sbjct: 77  KVLLKGMSYTELEKWVQSHGFRPGQAMM----LWKRLYANNNTLAHYFDELEGLNKDFKK 132

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121
           +L++H  +    + D   + DGT+K L R     +     IETV IP ++ R T+CVSSQ
Sbjct: 133 MLSEHARLKAISMEDVVTASDGTKKILFRLDDEMV-----IETVIIPCDRGRTTVCVSSQ 187

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C FCYTG   L R+LT  EI+ QV+ A+ LL    G               I+N
Sbjct: 188 VGCAMNCQFCYTGRMGLKRHLTTAEIVDQVVSAQRLLTSDAGS--------------ITN 233

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +V MGMGEPL N +NV K+  I     GL FS R++T+STSG VP + R   E    LA+
Sbjct: 234 VVFMGMGEPLQNIENVIKAADIMVHDQGLHFSPRKVTISTSGLVPQLKRFLRESNCALAV 293

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SL+A ++++RN ++PINRKY L +L+D  R      N  ++ FEYVML G+NDS  DA  
Sbjct: 294 SLNATTDEVRNWIMPINRKYNLGLLLDTLRKELHFKNNYKVLFEYVMLAGVNDSLEDAER 353

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +++GIP KINLI FNP  G ++  + ++ ++ F   +  +  +  +R  RG D +AA
Sbjct: 354 LSDLVQGIPCKINLIQFNPHSGSQFRPTSKEKMIEFRNILAEAKCTVFLRDSRGDDQMAA 413

Query: 362 CGQL 365
           CGQL
Sbjct: 414 CGQL 417


>gi|83816743|ref|YP_446232.1| radical SAM protein [Salinibacter ruber DSM 13855]
 gi|294508165|ref|YP_003572223.1| Conserved hypothetical protein containing radical SAM domain
           [Salinibacter ruber M8]
 gi|123753375|sp|Q2S0P9|RLMN_SALRD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|83758137|gb|ABC46250.1| radical SAM enzyme, Cfr family [Salinibacter ruber DSM 13855]
 gi|294344493|emb|CBH25271.1| Conserved hypothetical protein containing radical SAM domain
           [Salinibacter ruber M8]
          Length = 369

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 200/375 (53%), Gaps = 32/375 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            +  L  M R  L++ + + G P    R R  Q++ W+Y +G+ DF  MS++ + +R  L
Sbjct: 16  DRVDLKTMGRAGLKDFVAEHGAP----RYRGDQLFNWVYGKGVSDFDRMSNLPKRMRRGL 71

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------EKSRGTLCV 118
            +  ++   EIV+++ + D T K L   P+       E ETV IP      E  R T+CV
Sbjct: 72  QRDATVEDIEIVEQQQAADRTVKALFELPS-----GREAETVLIPAIDERGEARRLTVCV 126

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SS+VGC++ C FC TG      NLT   I  QV     +  +               GR 
Sbjct: 127 SSEVGCAMGCEFCATGRMGFRENLTPGAIFDQVWHMNEVAQE-------------HFGRP 173

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           ++NIV MGMGEPL N+D V  S+SI +D   L+ S ++IT+ST G    I  + ++ +  
Sbjct: 174 VTNIVFMGMGEPLLNYDAVLDSISILTDEDSLNLSAQKITVSTVGLARRIKDLADDQLRT 233

Query: 238 MLAISLHAVSNDLRNILVPINR--KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
            LA+SLHA  N+ R+ ++P+N   K  L  L +A ++Y   +  + IT+EY + KG+NDS
Sbjct: 234 NLAVSLHAPDNETRSRIMPVNEAEKTSLPALKEALQYYFDKTGRQ-ITYEYCLFKGVNDS 292

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
             DA NL  + +  P+K+NL+ +NP  G  +  + +  +  F + + + G +  +R  RG
Sbjct: 293 ETDARNLADVTRWAPSKVNLLMYNPVEGLNFERTSEAQLDRFVQVLVQEGVTVTVRRSRG 352

Query: 356 LDILAACGQLKSLSK 370
            DI AACGQL +  +
Sbjct: 353 QDIDAACGQLANEGE 367


>gi|229491476|ref|ZP_04385300.1| radical SAM enzyme, Cfr family [Rhodococcus erythropolis SK121]
 gi|229321761|gb|EEN87558.1| radical SAM enzyme, Cfr family [Rhodococcus erythropolis SK121]
          Length = 369

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 187/373 (50%), Gaps = 26/373 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +    L  +   E +EA+ ++G+P      R  Q+ +  Y R   D + M+D+   VR  
Sbjct: 16  MPPRHLADLDSAERKEAVKELGLPA----FRADQLARQYYARLEADPEKMTDLPASVREK 71

Query: 64  LNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           + +  F  +   I         TRK L +     +     +E+V +    R TLC+SSQ 
Sbjct: 72  VGESLFPTLLTPIKHLACDSGDTRKTLWKAHDGTL-----LESVLMRYPDRATLCISSQA 126

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A + + D           +     ++SN+
Sbjct: 127 GCGMACPFCATGQGGLDRNLSTAEIVDQVREAAAAMRD---------GEVAGGPGRLSNV 177

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V  ++   +     GL  S+R +T+ST G  P I ++ +E + V L
Sbjct: 178 VFMGMGEPLANYKRVVAAVRRITSPAPDGLGLSQRSVTVSTVGLAPAIRKLADEGLSVTL 237

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ +  ++ A R+Y   +   R++ EY M+K +ND P  A
Sbjct: 238 AVSLHTPDDELRDTLVPVNNRWSVSEVLQAARYYADKTGR-RVSIEYAMIKNVNDQPWRA 296

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K LK   G    +NLIP NP PG E+  S +     F   +   G S  +R  RG 
Sbjct: 297 DMLGKKLKKALGGLVHVNLIPLNPTPGSEWDASPKDVEREFVRRVIAQGVSCTVRDTRGQ 356

Query: 357 DILAACGQLKSLS 369
           +I AACGQL + +
Sbjct: 357 EIAAACGQLAAEN 369


>gi|331698480|ref|YP_004334719.1| ribosomal RNA large subunit methyltransferase N [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953169|gb|AEA26866.1| Ribosomal RNA large subunit methyltransferase N [Pseudonocardia
           dioxanivorans CB1190]
          Length = 368

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 182/374 (48%), Gaps = 27/374 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L    L  +   + + A+  +G+P      R  Q+ +  + R   D   M+D+    R  
Sbjct: 15  LPPRHLADLDPADRKAAVADLGLPG----FRADQLARHYFGRLTADVDEMTDLPAAARET 70

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L      +   + ++      TRK L R     +      E+V +    R T+C+SSQ G
Sbjct: 71  LASLLPPLVTPVTEQSCDEGATRKMLWRGHDGALA-----ESVLMAYPDRATVCISSQAG 125

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG   L RNL+  EI+ QV  A +   D    E +          ++SNIV
Sbjct: 126 CGMACPFCATGQGGLQRNLSTGEIVDQVRQAAAAARDGALGEPM----------RLSNIV 175

Query: 184 MMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
            MGMGEPL N+  V  +L   +     GL  S R IT+ST G V  I ++  E + V LA
Sbjct: 176 FMGMGEPLANYKRVVAALRRITSPAPDGLGISPRGITVSTVGLVQAIDKLAAEGLPVTLA 235

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLH   ++LR+ LVP+N ++ +  ++DA R Y   +   R++ EY +++ +ND P  A 
Sbjct: 236 VSLHTPDDELRDTLVPVNNRWKVGEVLDAARRYAQATGR-RVSIEYALIRDVNDQPWRAD 294

Query: 301 NLIKILKGI----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
            L K+L+         +NLIP NP PG E+  S +     F   ++ +G +  +R  RG 
Sbjct: 295 LLGKLLRQRVGTKRVHVNLIPLNPTPGSEWDASPRPVQDEFVRRVQAAGVACTVRDTRGQ 354

Query: 357 DILAACGQLKSLSK 370
           +I AACGQL +  +
Sbjct: 355 EIDAACGQLAATHR 368


>gi|260654398|ref|ZP_05859888.1| radical SAM enzyme, Cfr family [Jonquetella anthropi E3_33 E1]
 gi|260631031|gb|EEX49225.1| radical SAM enzyme, Cfr family [Jonquetella anthropi E3_33 E1]
          Length = 352

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/371 (32%), Positives = 196/371 (52%), Gaps = 28/371 (7%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           + +  +E    L  I       +    QI +WIY + + D+ GM+++S+++R  L +  S
Sbjct: 8   LELSYDE---WLTLIQEQFGAKKFVADQICQWIYQKKVFDWNGMTNLSKDLRAALAERVS 64

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           I+ P +V+ +IS DGT+K+L             +E+V +   +  T C+SSQVGC L C+
Sbjct: 65  IVPPVLVERQISADGTKKYLWELSD-----GARVESVLMDHGNHLTACLSSQVGCPLKCA 119

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG     RN+TA EI+   L                      +G+ I N+V MGMGE
Sbjct: 120 FCATGRGGFERNMTAGEIVGHFLAME-----------------ADLGKPIGNVVFMGMGE 162

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           PL NF NV++++    +        R +T+ST+G    I ++ +  +GV L +SLHA ++
Sbjct: 163 PLLNFVNVERAIRCLLEPKMRGMGVRHVTISTAGVADGIRKLADSGLGVYLCLSLHAPND 222

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           +LR+ L+PIN +YPL  ++DA +++ G +   R+T EYV++KG+ D P  A  L  +   
Sbjct: 223 ELRSRLMPINERYPLPQVLDALKYWQGKT-GVRLTVEYVLIKGVTDLPELAYELPTLFSD 281

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +   +NLIP+NP     +       I  F++ ++  G    +R  +G DI AACGQL++ 
Sbjct: 282 LQTYVNLIPYNPVIPS-FSRPSASRIEPFAKILRELGMEVEVRREKGTDIDAACGQLRAK 340

Query: 369 SKRIPKVPRQE 379
             R  +   ++
Sbjct: 341 KDRPGERETRK 351


>gi|319901401|ref|YP_004161129.1| 23S rRNA m(2)A-2503 methyltransferase [Bacteroides helcogenes P
           36-108]
 gi|319416432|gb|ADV43543.1| 23S rRNA m(2)A-2503 methyltransferase [Bacteroides helcogenes P
           36-108]
          Length = 346

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/373 (35%), Positives = 194/373 (52%), Gaps = 29/373 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K+ L+G+   EL+  +  +G+P         QI  W+Y + +     MS++S   R L
Sbjct: 1   MQKQPLLGLTLSELQNVVKNLGMPG----FAAKQIASWLYDKKVLSIDEMSNLSLRHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L + + +     VD   S DGT K+L R      G    +E VYIP+  R TLCVSSQVG
Sbjct: 57  LKELYEVGAEIPVDAMRSVDGTVKYLYR-----AGEGHFVEAVYIPDDDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                          K++N+V
Sbjct: 112 CKMNCKFCMTGKQGFTANLTANQIINQI-------------------SSLPERDKLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L + + S G S+S +RITLS+ G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALEVMTASYGYSWSPKRITLSSVGLRKGLQRFIEESDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H      R  L+P  + + +  +++  R+Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HTPVPLQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  +INLI F+  P  +   +D + +    + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRINLIRFHAIPEVDLEGADMETMTALRDYLTAHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKSLSKRIPKVP 376
            L +  +   K  
Sbjct: 332 MLSTAKQEDDKQE 344


>gi|226366029|ref|YP_002783812.1| ribosomal RNA large subunit methyltransferase N [Rhodococcus opacus
           B4]
 gi|254807198|sp|C1B2V0|RLMN_RHOOB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|226244519|dbj|BAH54867.1| putative rRNA methyltransferase [Rhodococcus opacus B4]
          Length = 369

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 191/374 (51%), Gaps = 28/374 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +  + L  +   E  EA+ ++G+P      R  Q+ +  Y R   D + M+D+   VR  
Sbjct: 16  MPPKHLADLDSTERREAVKELGLPG----FRADQLARQYYARLEADPEKMTDLPAAVREQ 71

Query: 64  LNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           +           V + ++CDG  TRK L +     +     +E+V +    R TLC+SSQ
Sbjct: 72  VGAALFPTLLTAV-KHLACDGGDTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQ 125

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   L RNL+  EI+ QV  A + L D           +     ++SN
Sbjct: 126 AGCGMACPFCATGQGGLQRNLSTAEIVDQVRAAAAALRDGD---------VHGGPGRLSN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           +V MGMGEPL N+  V  ++   +     GL  S+R +T+ST G  P I ++ +E + V 
Sbjct: 177 VVFMGMGEPLANYKRVVAAVRRITSPAPDGLGLSQRSVTVSTVGLAPAIRKLADEDLSVT 236

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLH   ++LR+ LVP+N ++ +  ++DA R+Y   S   R++ EY +++ +ND P  
Sbjct: 237 LAVSLHTPDDELRDTLVPVNNRWSVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQPWR 295

Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           A  L K L+   G    +NLIP NP PG E+  S +     F   +   G S  +R  RG
Sbjct: 296 ADMLGKKLRKALGPLVHVNLIPLNPTPGSEWDASPKPVEKEFVRRVLAQGVSCTVRDTRG 355

Query: 356 LDILAACGQLKSLS 369
            +I AACGQL + +
Sbjct: 356 QEIAAACGQLAAEN 369


>gi|317968945|ref|ZP_07970335.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
           CB0205]
          Length = 365

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 180/377 (47%), Gaps = 42/377 (11%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +   L+GM    LE+   + G        R  Q+  W+Y +G R    +S + +  R  L
Sbjct: 10  EARPLLGMGLSALEQWAKQHG----QAAFRGRQLHDWLYAKGARSLDQVSVLPKAFREEL 65

Query: 65  NQHFSI------IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
                            +   I+ DGT K LL    +       IETV IP + R T+CV
Sbjct: 66  AAQPPAAAFDWMGRSRELHRSIASDGTTKLLLGTHDQL-----SIETVGIPAEGRLTVCV 120

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC + C FC TG   L R+L   EI+ QVL  R ++   P                
Sbjct: 121 SSQVGCPMACRFCATGKGGLQRSLAVHEIVDQVLSVREVMDQRP---------------- 164

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE----- 233
            S++V MGMGEPL N ++V  ++        L  ++R+IT+ST G    + R+ E     
Sbjct: 165 -SHVVFMGMGEPLLNVESVLSAIDCLCTD--LGMAQRQITVSTVGVPRTLPRLAELALER 221

Query: 234 --EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
                  LA+SLHA    LR  L+P    YP+E L++ CR Y  ++   R++FEY++L G
Sbjct: 222 LGRAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLEDCRRYVEITGR-RVSFEYILLGG 280

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
           +ND PR A  L ++L+G  + +NLIP+NP    E+     + +  F   +     +  +R
Sbjct: 281 LNDQPRHAAALAQLLRGFQSHVNLIPYNPIQEEEFQRPTPQAVEAFRRALMDRHVAVSVR 340

Query: 352 TPRGLDILAACGQLKSL 368
             RGLD  AACGQL+  
Sbjct: 341 ASRGLDADAACGQLRRR 357


>gi|152993941|ref|YP_001359662.1| ribosomal RNA large subunit methyltransferase N [Sulfurovum sp.
           NBC37-1]
 gi|205829910|sp|A6QCU6|RLMN_SULNB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|151425802|dbj|BAF73305.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 359

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 204/375 (54%), Gaps = 42/375 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +  + +EEL E +            R+ QI+ WIY +    F+ M ++ + +R  L+
Sbjct: 5   KKIIQDLTKEELAEKIK--------PAFRSKQIYDWIYHKYAASFEEMKNLPKAMREELD 56

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI-------------PEKS 112
             +++   + V  + S DG+RK+L             +E V +               + 
Sbjct: 57  AEYTLAPLKTVTVQDSMDGSRKYLFELHD-----GHTVEAVLLLMRDKEYHEDGSVKHQE 111

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R T+C+SSQVGC + C+FC T     +RNLTA EI+ Q+ + +                 
Sbjct: 112 RYTVCISSQVGCKVGCAFCLTAKGGFMRNLTAGEIVEQLRMIKKDNDI------------ 159

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
                +  NIV MGMGEPL N + V KS+ I ++  G++ +  R T+STSG    I ++G
Sbjct: 160 --AANRRVNIVFMGMGEPLDNLEAVAKSVKIFAEEEGMAIAPHRQTISTSGLSSKIEKLG 217

Query: 233 E-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           + E+GV LAISLHAV ++LR  L+PIN+ Y +E +I A +++P +++ +R+ FEY+++K 
Sbjct: 218 KMELGVNLAISLHAVDDELRQQLMPINKAYNIESIITAVKNFP-VNDRKRVMFEYLVIKD 276

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
           +ND    A  L+ +L GI AK+NLI FNP+ G E+    + D+  F E + + G    IR
Sbjct: 277 VNDDISAAKKLLSLLDGIKAKVNLIYFNPYGGTEFKRPSEADMKKFQEYLTKRGLHCTIR 336

Query: 352 TPRGLDILAACGQLK 366
             +GLDI AACGQL+
Sbjct: 337 ESKGLDISAACGQLR 351


>gi|260887299|ref|ZP_05898562.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185]
 gi|330838947|ref|YP_004413527.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185]
 gi|260862935|gb|EEX77435.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185]
 gi|329746711|gb|AEC00068.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185]
          Length = 350

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 197/365 (53%), Gaps = 26/365 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +++ GM  E ++E    +    R  + R  Q+ +W+Y +  + F  M+++ + +R  L  
Sbjct: 2   KNIFGMTLEAMQEDFAAL----RLEKYRARQVAEWLYKKCAKRFSDMTNLPKSLRTELET 57

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            ++I  P +     + DG T K+LL F          +E V + +    ++C+S+Q GC+
Sbjct: 58  RYTIDTPLLRTRLDAADGRTSKFLLAFSD-----GAAVEAVLMRQPYGNSICISTQAGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +    L R+LTA E+L +VL    +              + S G K+  +V+M
Sbjct: 113 MGCSFCASTLHGLARDLTAGEMLAEVLFIEEM--------------LKSQGGKVDTMVLM 158

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N++NV   L +  +   L+ S R ITLSTSG VP I R+ EE + + L+ISLH
Sbjct: 159 GSGEPLMNYENVVNFLRLLHEEYVLNISYRSITLSTSGIVPAIDRLAEEGMPLTLSISLH 218

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A   ++R+ L+PINRKYPL  ++ A + Y   +   R+T+EY++++ +ND  R+A  L +
Sbjct: 219 APREEIRSELMPINRKYPLSDVVAAGKRYAEKTGR-RVTYEYILIRDVNDGEREAQELAE 277

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L G  A +NLIP NP     +    ++    F   + R   ++ +R   G DI AACGQ
Sbjct: 278 LLAGQLASVNLIPINPVKERGFERPSEERTAAFCRALTRRHITATVRREMGADIQAACGQ 337

Query: 365 LKSLS 369
           L++  
Sbjct: 338 LRNRH 342


>gi|91200995|emb|CAJ74052.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 368

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/372 (36%), Positives = 199/372 (53%), Gaps = 26/372 (6%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN L+  S+  +   E  E    +G P      R  QI  W+Y +G  DF  MSDI    
Sbjct: 1   MNKLQLTSITELDLSESVELCRSLGEPS----YRGKQILSWMYKKGATDFNQMSDIPLPF 56

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           R  L +  ++   +I     S DGT K+L+  P   +     IE V + +  R T CVS+
Sbjct: 57  REKLEEAHNVFQTKIHTINTSQDGTEKFLIHLPDNNL-----IECVLLRDGKRRTACVST 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ CSFC +G   L RNL   EI+ QVL  ++ L                    I+
Sbjct: 112 QVGCAMGCSFCASGVLGLTRNLKTGEIIEQVLHIKNHL---------------PANEHIT 156

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           NIV MG+GEPL N+D V KSL I +   GL+   R IT+ST G +  I R+ +E + V L
Sbjct: 157 NIVFMGIGEPLANYDKVVKSLRIMNADWGLAIGARNITISTVGLIEGIRRLAKEGLKVNL 216

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           AISLHA +++ RN LVP N K  ++ ++ A + Y   ++   I+FEY M+ GINDS +DA
Sbjct: 217 AISLHASNDNTRNKLVPSNSKTGIKNILGAAQEYFNATHRD-ISFEYTMIDGINDSKQDA 275

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L +ILKG+   +N++P NP     +    QK + TF   +K  G  + +R  +G+++ 
Sbjct: 276 KLLAQILKGVQCNVNILPVNPIKEGNFAPPVQKTVETFCTVLKNHGIVATVRQRKGINVN 335

Query: 360 AACGQLKSLSKR 371
           AACGQL+   ++
Sbjct: 336 AACGQLRLQIQK 347


>gi|325860042|ref|ZP_08173169.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola CRIS
           18C-A]
 gi|325482568|gb|EGC85574.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola CRIS
           18C-A]
          Length = 353

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 190/366 (51%), Gaps = 29/366 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+GM   EL+E    +G+P         Q+ KW+Y + ++    M++IS+  R  L 
Sbjct: 5   KKYLLGMTLGELKEVAKSLGMPA----FTGGQMAKWLYTQQVKSIDEMTNISKANREKLA 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             ++I   E  D + S DGT K+L             +ETVYIPE  R TLCVSSQVGC 
Sbjct: 61  AAYAIGCKEPTDAQYSKDGTVKYLF-----PTDSGKFVETVYIPEDGRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    +L+A +IL QV                          K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGSLSATDILNQVYSLPERD-------------------KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N DNV +   I +   G  +S +RIT+S+ G    + R  EE    +AIS+H+
Sbjct: 157 GQGEPMDNLDNVLRVTEILTAGFGYGWSPKRITVSSVGIKGKLKRFLEESDCHVAISMHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R+ L+P  R   +E ++D   +Y   S+ RR++FEY++ K +NDS   A  ++++
Sbjct: 217 PLHEQRSELMPAERGMSIESIVDLLGNY-DFSHQRRLSFEYIVFKDVNDSEAHAKAIVRL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+  +INLI F+P P       D + +  F   +   G  + IR  RG DI AACG L
Sbjct: 276 LKGLDCRINLIRFHPIPNTPLQGVDDQKMEEFRNYLTLHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSKR 371
            +  ++
Sbjct: 336 STAKEK 341


>gi|288800113|ref|ZP_06405572.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333361|gb|EFC71840.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 344

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 193/368 (52%), Gaps = 29/368 (7%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
              K++L+GM   EL++A+  +G+ +        QI KW+Y + +     M++IS+  R 
Sbjct: 2   MTDKQALLGMSLFELKQAVTNLGMAE----FTAKQIAKWLYSQHVSSIDEMTNISKSNRE 57

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L +HF I     +D + S DGT K+L    +        +ETVYIP+K R TLCVSSQV
Sbjct: 58  KLKEHFYIGCANFIDAQYSKDGTIKYLFPTQSGKF-----VETVYIPDKDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG Q    NLT+ +IL Q+                          K++NI
Sbjct: 113 GCKMNCLFCQTGKQGFEGNLTSCDILNQIYSLPERD-------------------KLTNI 153

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MG GEP+ NFDNV ++  I +   G ++S +RIT+S+ G    + R   E    +AIS
Sbjct: 154 VFMGQGEPMDNFDNVLRTTQILTSDYGYAWSPKRITVSSVGVKGKLERFLNESDCHVAIS 213

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           +H      R  ++P  +   ++ +++  R+Y   ++ RR++FEY++  G+ND+   A  +
Sbjct: 214 MHNPIASERESIMPAEKGMSIDSIVELLRNY-DFAHQRRLSFEYIIFDGLNDTKEHAQYI 272

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           + +++G+  + NLI F+  P      +++K +  F + +   G  + IR  RG DI AAC
Sbjct: 273 VDLVRGLECRFNLIRFHQIPNVSLNPTNEKKMELFRDYLTSHGVFTTIRASRGQDIFAAC 332

Query: 363 GQLKSLSK 370
           G L +  K
Sbjct: 333 GLLSTAKK 340


>gi|225850129|ref|YP_002730363.1| ribosomal RNA large subunit methyltransferase N [Persephonella
           marina EX-H1]
 gi|225644821|gb|ACO03007.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1]
          Length = 353

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/371 (34%), Positives = 204/371 (54%), Gaps = 31/371 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+  +   +LE  +   G      + R  QI KWIY + +  +  M+D+S+EVR+ L +
Sbjct: 2   ISIKDLNYNQLERWVKDQGW----KKFRAKQIAKWIYNKKVNSYDEMTDLSKEVRNYLKE 57

Query: 67  HFSIIYPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +  +   E+V  E+ S DG+ K+L R           +E+V+IPE+   TLCVS+QVGC+
Sbjct: 58  NTKLNVLELVTFERSSQDGSIKFLWRLED-----GHTVESVFIPERGHNTLCVSTQVGCA 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC+T    L+RNLT  EI+ Q + ++  +G                  +ISN+V M
Sbjct: 113 VGCKFCFTTKDGLIRNLTTAEIVDQYIQSQIFVGP---------------ENRISNVVYM 157

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAIS 242
           GMGEPL N++NVK+S+ I +D   L  S R+IT+S+SG +  I ++ ++     V LA+S
Sbjct: 158 GMGEPLANYENVKRSVQILTDDRMLGLSNRKITISSSGIIHQIKKMYDDPSFPQVRLAVS 217

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+A     R  ++PI+    LE L+      P +    RI  EYV++K IND P DA  L
Sbjct: 218 LNASDQKTRERIMPISETNSLEDLMKTLNRLP-VKTGFRIMLEYVLIKDINDRPEDAHRL 276

Query: 303 IKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            +++       K+NLIPFNP+PG ++   +++ +  F + + +    + +R  +G DI A
Sbjct: 277 ARLIGKNKKRYKVNLIPFNPYPGSDFERPEKERVDQFHKILWQYNIGAFVRWSKGSDISA 336

Query: 361 ACGQLKSLSKR 371
           ACGQL+    +
Sbjct: 337 ACGQLRKKEVQ 347


>gi|326333653|ref|ZP_08199890.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1]
 gi|325948559|gb|EGD40662.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1]
          Length = 395

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 120/371 (32%), Positives = 186/371 (50%), Gaps = 27/371 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +     ++A  + G+P      R  Q+    + R + D   M+D+    R  L  
Sbjct: 42  RHLADLDLAGRQDAAKEAGLPG----FRAKQLSVHYFERLVDDPAKMTDLPASQREELVN 97

Query: 67  HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F       + ++ +  GT RK L +     +     +E+V +    R T+C+SSQ GC 
Sbjct: 98  TFLPDLMTPIRQQEADKGTTRKTLWKLFDGAL-----VESVLMRYTDRATVCISSQAGCG 152

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RN++  EI+ QV++A   +             IP    ++SN+V M
Sbjct: 153 MACPFCATGQGGLERNMSTAEIVHQVVVAARQMA---------SGEIPGGPGRLSNVVFM 203

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEP+ N+  +  ++   +     GL  S R +T+ST G VP I ++ EE I V LA+S
Sbjct: 204 GMGEPMANYKALMGAVRRLTSPAPEGLGLSARHVTVSTVGLVPRIKQLTEEGIPVTLALS 263

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LRN LVPIN ++ +   ++A  +Y  ++   R++ EY M++GIND    A  L
Sbjct: 264 LHAPDDELRNELVPINTRFSVAETVEAAWNYARVTKR-RVSIEYAMMRGINDQAWRADLL 322

Query: 303 IKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
             +L G        +NLIP NP PG ++  SD  D   F   ++  G S+ +R  RG +I
Sbjct: 323 ADVLNGYGDWGWVHVNLIPLNPTPGSKWTASDPADEREFVRRLEAKGISTTVRDTRGREI 382

Query: 359 LAACGQLKSLS 369
             ACGQL + S
Sbjct: 383 DGACGQLAAQS 393


>gi|270284175|ref|ZP_05965684.2| radical SAM enzyme, Cfr family [Bifidobacterium gallicum DSM 20093]
 gi|270277254|gb|EFA23108.1| radical SAM enzyme, Cfr family [Bifidobacterium gallicum DSM 20093]
          Length = 369

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 188/374 (50%), Gaps = 28/374 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L    +  EE      ++G+P    + R +Q+ K  Y     +    +D     R  
Sbjct: 11  KPPLHFADLTNEERIAKAKELGLP----KFRVNQLAKHYYDHFDVNAADFTDFPAAHRGQ 66

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
             Q F       V  +++ DG T K L             IE+V +   +R TLC+SSQV
Sbjct: 67  AAQTFFPQLITEVMRQVADDGQTIKTLWDLFD-----GSRIESVLMRYPNRATLCISSQV 121

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++  EIL QV +A  ++ +           +     ++SNI
Sbjct: 122 GCGMGCPFCATGQLGLTRNMSTGEILEQVRVAARMMRE---------GEVAGGPGRLSNI 172

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEP+ N+ +V  ++   S     G   S R IT+ST G VP I ++ +E + V L
Sbjct: 173 VFMGMGEPMGNYKSVMSAVRQISAMPPDGFGISARNITVSTVGVVPGIRKLAQEGLPVRL 232

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++  + ++DA   Y   SN  R++ EY +++GIND    A
Sbjct: 233 AVSLHAPSDELRDKLVPMNKRFNTKQVLDAAHDYYLASNR-RVSIEYALMRGINDQAEHA 291

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G ++  S  +D   F + + R+G ++ +R  RG 
Sbjct: 292 RLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQQFLDILHRAGITATMRDTRGQ 351

Query: 357 DILAACGQLKSLSK 370
           DI  ACGQL +  K
Sbjct: 352 DIDGACGQLAAKVK 365


>gi|167750827|ref|ZP_02422954.1| hypothetical protein EUBSIR_01810 [Eubacterium siraeum DSM 15702]
 gi|167656262|gb|EDS00392.1| hypothetical protein EUBSIR_01810 [Eubacterium siraeum DSM 15702]
 gi|291530596|emb|CBK96181.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium siraeum 70/3]
          Length = 338

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 120/369 (32%), Positives = 206/369 (55%), Gaps = 33/369 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  ++ + +EELEE +L +G      + R  QI+ W+++  + +F  M+++S ++R  
Sbjct: 1   MEKTDILSLSKEELEEKILAMG----EKKFRAGQIYDWLHINKVEEFSKMTNLSAQLREK 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L+  F I   +I    +S  D T K+L            ++ETV +  K   ++C+S+QV
Sbjct: 57  LDDIFWINSLKIQKRLVSDIDNTVKYLYGLSD-----GEKVETVLMEYKHGNSICISTQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +     VRNL   E+LLQ+  +                     GRKI+++
Sbjct: 112 GCKMGCKFCASTKAGFVRNLEPSEMLLQIYESER-----------------DSGRKINHV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V+MG+GEPL NFDNV K L + S       S R +++ST G V  I  + + ++G+ L++
Sbjct: 155 VLMGIGEPLDNFDNVVKFLRLLSAKD--DMSLRHVSVSTCGLVNRIYELADLKLGITLSV 212

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +N+LR+ ++PIN ++ +E L++AC++Y   +  RRI++E+ ++ G+ND+ + A  
Sbjct: 213 SLHAPTNELRSSIMPINDRFRIEELMEACKYYFN-TTGRRISYEFALIDGVNDNRQSADA 271

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+K+LKG    +NLIP N      +  S    +  + + +   G ++ +R   G DI AA
Sbjct: 272 LLKLLKGQNCHVNLIPVNEIKEGVFKRS--ASVEKYKQMLIDGGLNATVRRTLGADISAA 329

Query: 362 CGQLKSLSK 370
           CGQL+  +K
Sbjct: 330 CGQLRRDNK 338


>gi|157415935|ref|YP_001483191.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205829693|sp|A8FP27|RLMN_CAMJ8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157386899|gb|ABV53214.1| hypothetical protein C8J_1617 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748573|gb|ADN91843.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315931319|gb|EFV10288.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 356

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 139/378 (36%), Positives = 202/378 (53%), Gaps = 42/378 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++  + EEL E +  +         R  QI++WIY +   +F  MS + + +R  L Q
Sbjct: 5   VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKYLRLELAQ 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
           +F     + V  + S DG+ K+L           + +E+V +P K              R
Sbjct: 57  NFHFSPVKCVKNEQSKDGSIKYLFELVD-----GLRVESVLLPMKEEKIDAEGKRISHAR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +                  
Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  NIV MGMGEPL N  NV K++ I + + GL+ S RR T+STSG    I  +G+
Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQ 217

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV+LAISLHAV++ LR  L+PIN+ Y +  ++DA R +P +   +R+ FEY+++ GI
Sbjct: 218 MNLGVLLAISLHAVNDGLRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR 
Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRE 336

Query: 353 PRGLDILAACGQLKSLSK 370
            +GLDI AACGQLK  +K
Sbjct: 337 SKGLDISAACGQLKERAK 354


>gi|303237669|ref|ZP_07324229.1| 23S rRNA m2A2503 methyltransferase [Prevotella disiens FB035-09AN]
 gi|302482121|gb|EFL45156.1| 23S rRNA m2A2503 methyltransferase [Prevotella disiens FB035-09AN]
          Length = 346

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 121/369 (32%), Positives = 191/369 (51%), Gaps = 29/369 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L+GM   EL+    ++G+P         Q+ KW+Y + +     M++IS++ R  L 
Sbjct: 5   KKPLVGMNLLELKNVAKELGMPA----FTGGQMAKWLYTQHVTSIDEMTNISKDNREKLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++++I   + +D + S DGT K+L             +E+VYIP+++R TLCVSSQVGC 
Sbjct: 61  ENYTIGCKKHIDAQYSKDGTIKYLF-----PTDNGKFVESVYIPDENRATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLT  +IL Q+                          K++NIV M
Sbjct: 116 MNCLFCQTGKQGFEGNLTTADILNQIYSL-------------------PEREKLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N+DNV K+  + +     ++S +RIT+S+ G    + R  EE    +AIS+H 
Sbjct: 157 GQGEPMDNYDNVLKTTQLLTADYAYAWSPKRITVSSIGIKSKLKRFLEESDCHVAISMHN 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              + R  ++P  +   +  +++  R+Y   S+ RR++FEY++ KG NDS   A  +IK+
Sbjct: 217 PIPEERIEVMPSEKAMSITEIVEMLRNY-DFSHQRRLSFEYIVFKGKNDSVDHAKAIIKL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++G+  + NLI F+  P       D K +  F   +   G  + IR  RG DI AACG L
Sbjct: 276 VEGLECRFNLIRFHTIPNVPLQGVDDKKMEEFRNYLTAHGVFTTIRASRGQDIFAACGLL 335

Query: 366 KSLSKRIPK 374
            +  K   K
Sbjct: 336 STAKKNANK 344


>gi|212715800|ref|ZP_03323928.1| hypothetical protein BIFCAT_00701 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661167|gb|EEB21742.1| hypothetical protein BIFCAT_00701 [Bifidobacterium catenulatum DSM
           16992]
          Length = 406

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 187/374 (50%), Gaps = 28/374 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L    M  EE       +G+P    + R  Q+    Y     + +  SD     R  
Sbjct: 51  KPPLHFADMTEEERITKAKDLGLP----KFRVKQLANHYYGHFDVNAEEFSDFPAAKRVE 106

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
             + F       V  +++ +GT  K L R     +     IE+V +   +R TLC+SSQV
Sbjct: 107 AAEIFFPTLITEVTRQVADEGTTIKTLWRLFDGSL-----IESVLMRYPTRTTLCISSQV 161

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++A EI+ QV +A   + D           +     ++SNI
Sbjct: 162 GCGMGCPFCATGQLGLTRNMSAGEIVEQVRVAAKAMRD---------GEVAGGPGRLSNI 212

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+ +V  ++   S     G   S R IT+ST G VP I ++  E I V L
Sbjct: 213 VFMGMGEPMGNYKSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLMAEGIPVRL 272

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +++LR+ LVP+N+++    ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 273 AVSLHAPNDELRDELVPMNKRFNTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 331

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G  +  S  +D   F + + ++G ++ +R  RG 
Sbjct: 332 KLLAKRLNHYGDNWAHVNPIPLNPIEGSRWTASKPEDEQQFLDILHKAGITATLRDTRGQ 391

Query: 357 DILAACGQLKSLSK 370
           DI  ACGQL +  +
Sbjct: 392 DIDGACGQLAAKER 405


>gi|115438803|ref|NP_001043681.1| Os01g0640800 [Oryza sativa Japonica Group]
 gi|113533212|dbj|BAF05595.1| Os01g0640800 [Oryza sativa Japonica Group]
 gi|218188735|gb|EEC71162.1| hypothetical protein OsI_03021 [Oryza sativa Indica Group]
 gi|222618932|gb|EEE55064.1| hypothetical protein OsJ_02780 [Oryza sativa Japonica Group]
          Length = 405

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 139/363 (38%), Positives = 199/363 (54%), Gaps = 26/363 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHL 63
           +  L GM   ELE  +   G       M    +WK +Y   +    +  ++ ++++ R +
Sbjct: 45  RVMLKGMDYPELENWVRSQGFRPGQAMM----LWKCLYGNNVWAHCYDELAGLNKDFRKM 100

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122
           L  H  +    + D   + DGTRK L       +     IETV IP    R T+CVSSQV
Sbjct: 101 LTDHADLKALTVKDILNASDGTRKILFSLEDGSV-----IETVVIPCTSGRTTVCVSSQV 155

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C FC+TG   L ++L+  EI+ Q + AR L  D  G               I+N+
Sbjct: 156 GCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFGS--------------ITNV 201

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N DNV K+ +I  D  GL FS R++T+STSG VP I R  +E    LA+S
Sbjct: 202 VFMGMGEPLHNIDNVLKASAIMVDEQGLQFSPRKVTVSTSGLVPQIKRFLQESNCALAVS 261

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+A ++++RN ++PINRKY L +L+   R    L    ++ FEYVML G+NDS  DA  L
Sbjct: 262 LNATTDEVRNWIMPINRKYNLSLLLGTLREEIRLKKKYKVFFEYVMLAGVNDSVDDAKRL 321

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           + +++GIP KINLI FNP  G ++  +  + I+ F   + + G    +R  RG D +AAC
Sbjct: 322 VDLVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNILIQDGLVVFVRLSRGDDQMAAC 381

Query: 363 GQL 365
           GQL
Sbjct: 382 GQL 384


>gi|167630204|ref|YP_001680703.1| radical sam enzyme, cfr family, putative [Heliobacterium
           modesticaldum Ice1]
 gi|205829773|sp|B0TGT1|RLMN_HELMI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|167592944|gb|ABZ84692.1| radical sam enzyme, cfr family, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 385

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 197/372 (52%), Gaps = 28/372 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +   L G+  EE+   L   G P      R  QI+KW+  R +R+   M+D+ Q +R  L
Sbjct: 31  QPTDLRGLFPEEIAALLTPWGQPT----FRGKQIFKWLQNRAVREVAEMTDLPQALRVRL 86

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGTLCVS 119
            +   +        +++ DGT K+L R     +     IE+V +P +      R T+C+S
Sbjct: 87  GEAGWLKPLAPERHRVARDGTEKYLWRLADGEL-----IESVLMPYRRAQTRDRVTVCLS 141

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +Q GC L+C FC TG Q   RNLTA EI+ QVL            +            K+
Sbjct: 142 TQAGCPLSCRFCATGRQGFRRNLTAAEIVGQVL------------DITHEKRKDDPDFKV 189

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           +N+V MGMGEP  N+DNV++++ + +   G +  +RRIT+ST+G VP I R  +E   V 
Sbjct: 190 TNLVFMGMGEPFLNYDNVRRAIGLFTHPEGQAIGQRRITVSTAGIVPGIDRFADEDWEVN 249

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  +  R+  +P+N ++PL  +++ACR Y   +  RR++ EY ++ G+ND   D
Sbjct: 250 LALSLHAADDKQRSEWMPVNDRFPLAQVLEACRRYWEKT-RRRLSVEYALMAGVNDRLED 308

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L  + KG P  +NLIP N   G      +++    F   ++R G  + IR  RG DI
Sbjct: 309 ARRLASLFKGWPIHLNLIPVNAVAGIGVRRPEREPTERFLAELRRWGVDAVIREERGQDI 368

Query: 359 LAACGQLKSLSK 370
            AACGQL+  +K
Sbjct: 369 EAACGQLRGAAK 380


>gi|304382166|ref|ZP_07364677.1| cfr family radical SAM enzyme [Prevotella marshii DSM 16973]
 gi|304336764|gb|EFM02989.1| cfr family radical SAM enzyme [Prevotella marshii DSM 16973]
          Length = 346

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 191/369 (51%), Gaps = 29/369 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+ L+GM +  L E  + +G+P         Q+ KW+Y R +     M+DIS+  R  L
Sbjct: 4   EKKPLLGMTQVALTETAVALGMPA----FTGRQMAKWLYSRHVSSIAEMTDISKAHRERL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             H+ I     VD + S DGT K+L             IETVYIP+K R TLCVS QVGC
Sbjct: 60  GMHYCIGNHAPVDCQRSVDGTVKYLFPTLD-----GRCIETVYIPDKERATLCVSCQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG Q    NLT  +IL Q+                           ++NIV 
Sbjct: 115 KMNCLFCQTGKQGFEGNLTVCDILNQIYSL-------------------PERETLTNIVF 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MG GEP+ N DNV ++  I +   G ++S +RIT+S+ G    + R  +E    +A+S+H
Sbjct: 156 MGQGEPMDNLDNVLQATEILTAPYGYAWSPKRITVSSVGVRGRLKRFLDESECHVAVSMH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +   + R  L+P  R   +  + D  R Y   S+ RR++FEY++  G+ND+P  A  +I+
Sbjct: 216 SPFPEQRAQLMPAERSMSITEIADLLRQY-DFSHQRRLSFEYIVFGGLNDTPAHAKAIIR 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+G+  ++NLI F+P P      ++++ +  F + + R G  + IR  RG DI AACG 
Sbjct: 275 LLQGLDCRVNLITFHPIPNISLHGANRETMERFRDELTRHGVFTTIRASRGQDIFAACGL 334

Query: 365 LKSLSKRIP 373
           L +  ++  
Sbjct: 335 LSTAKQKAD 343


>gi|302554450|ref|ZP_07306792.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472068|gb|EFL35161.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           viridochromogenes DSM 40736]
          Length = 368

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 183/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA+  +G        R  Q+ +  + R   D +  +DI    R  L +
Sbjct: 20  RHLADLTPAERKEAVAAVG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGARGRLQE 75

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   +S D   TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  ALLPELMTVV-RHLSTDQGTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  S+   +D    G+  S+R IT+ST G VP I R  +E     LAI
Sbjct: 181 MGMGEPLANYNRVIGSIRRLTDPEPDGVGLSQRGITVSTVGLVPAIHRFADEGFKCRLAI 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   R++ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFEYSAKSGR-RLSIEYALIRDINDQAWRGDR 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG P  +NLIP NP PG ++  S  +D   F E I   G    IR  RG +I  A
Sbjct: 300 LGRMLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAATER 368


>gi|119025804|ref|YP_909649.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154487364|ref|ZP_02028771.1| hypothetical protein BIFADO_01214 [Bifidobacterium adolescentis
           L2-32]
 gi|205829670|sp|A1A1I4|RLMN_BIFAA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118765388|dbj|BAF39567.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
 gi|154083882|gb|EDN82927.1| hypothetical protein BIFADO_01214 [Bifidobacterium adolescentis
           L2-32]
          Length = 386

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/374 (33%), Positives = 189/374 (50%), Gaps = 28/374 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L    M  EE      ++G+P    + R  Q+    Y     + +  SD     R  
Sbjct: 31  KPPLHFADMSEEERIGKAKELGLP----KFRVKQLANHYYGHFDVNAEEFSDFPAARRSD 86

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
             + F       V  +++  GT  K L R     +     IE+V +   +R TLC+SSQV
Sbjct: 87  AAEAFFPELIHEVTRQVADGGTTIKTLWRLFDGSL-----IESVLMRYPTRTTLCISSQV 141

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++A EI+ QV +A   + D           +     ++SNI
Sbjct: 142 GCGMGCPFCATGQLGLTRNMSAGEIVEQVRVAAKAMRD---------GEVAGGSGRLSNI 192

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEP+ N+ +V  ++   S     G   S R IT+ST G VP I ++ EE I V L
Sbjct: 193 VFMGMGEPMGNYKSVLSAVRQISSMPPEGFGISARNITVSTVGVVPGIRKLAEEGIPVRL 252

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++  + ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 253 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 311

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G ++  S  +D   F E +  +G ++ +R  RG 
Sbjct: 312 KLLAKRLNHYGDDWAHVNPIPLNPIEGSKWTASKPEDERRFLEILHNAGITATLRDTRGQ 371

Query: 357 DILAACGQLKSLSK 370
           DI  ACGQL +  +
Sbjct: 372 DIDGACGQLAAKER 385


>gi|237715676|ref|ZP_04546157.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408684|ref|ZP_06085230.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294807293|ref|ZP_06766107.1| radical SAM enzyme, Cfr family [Bacteroides xylanisolvens SD CC 1b]
 gi|299148689|ref|ZP_07041751.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_23]
 gi|229444385|gb|EEO50176.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353549|gb|EEZ02643.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294445591|gb|EFG14244.1| radical SAM enzyme, Cfr family [Bacteroides xylanisolvens SD CC 1b]
 gi|298513450|gb|EFI37337.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_23]
          Length = 344

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 198/367 (53%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     VDE  S DGT K+L +     +G    +E+VYIP+  R TLCVSSQVG
Sbjct: 57  LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                          K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIMNQI-------------------HSLPERDKLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L + + + G ++S +RITLST G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R  L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +D   +  F + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKSLSK 370
            L +  +
Sbjct: 332 MLSTAKQ 338


>gi|205355727|ref|ZP_03222497.1| hypothetical protein Cj8421_1776 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346504|gb|EDZ33137.1| hypothetical protein Cj8421_1776 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 335

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/352 (38%), Positives = 195/352 (55%), Gaps = 34/352 (9%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  QI++WIY +   +F  MS++ +++R  L Q+F     + V  + S DG+ K+L   
Sbjct: 2   FRVKQIYQWIYQKYANNFSDMSNLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 61

Query: 93  PARCIGGPVEIETVYIPEKS-------------RGTLCVSSQVGCSLTCSFCYTGTQKLV 139
                   + IE+V +P K              R T+CVSSQVGC   CSFC T    L 
Sbjct: 62  VD-----GLRIESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 116

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNL+A EI+ Q+L  +                      +  NIV MGMGEPL N  NV K
Sbjct: 117 RNLSAGEIVGQILWIKKQNNI--------------PYERRVNIVYMGMGEPLDNLKNVSK 162

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPIN 258
           ++ I + + GL+ S RR T+STSG    I  +G+  +GV+LAISLHAV+++LR  L+PIN
Sbjct: 163 AVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 222

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           + Y +  ++DA R +P +   +R+ FEY+++ GIND    A  L+K+L GI AK+NLI F
Sbjct: 223 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 281

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           NP  G  Y     ++ + F + +   G +  IR  +GLDI AACGQLK  +K
Sbjct: 282 NPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 333


>gi|88807336|ref|ZP_01122848.1| hypothetical protein WH7805_12333 [Synechococcus sp. WH 7805]
 gi|88788550|gb|EAR19705.1| hypothetical protein WH7805_12333 [Synechococcus sp. WH 7805]
          Length = 351

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 187/379 (49%), Gaps = 37/379 (9%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           ++  + ++L+G+   ELE   +  G        R  Q+  W+Y +G RD Q ++ + +  
Sbjct: 2   ISTAQSKTLLGLGSSELERWAVTQGQSA----FRGRQLHDWLYAKGARDLQEITVLPKSW 57

Query: 61  RHLLNQ-HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           R  L     SI   +  D K++ D T K LL            +ETV IP   R T+CVS
Sbjct: 58  RASLQDSGVSIGRLKEQDRKVAADATTKLLL-----ATDDGETLETVGIPTDQRLTVCVS 112

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC + C FC TG   L R+L   EI+ QVL  R ++                  R+ 
Sbjct: 113 SQVGCPMACRFCATGKGGLQRSLYTHEIVAQVLSVREVM-----------------QRRP 155

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE------ 233
           S++V MGMGEPL N + V  S+   +D   L   +RRIT+ST G    + ++ E      
Sbjct: 156 SHVVFMGMGEPLLNIEAVLDSIRCLNDD--LGIGQRRITVSTVGVPRTLPKLAELAMERL 213

Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
                 LA+SLHA +  LR  L+P    YP + L+D CRHY  ++   R++FEY++L G+
Sbjct: 214 GRAQFTLAVSLHAPNQTLREELIPTAHAYPYDALLDDCRHYLAITGR-RVSFEYILLGGL 272

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L   + G  + +NLI +NP    E+    +  I  F   ++  G +  +R 
Sbjct: 273 NDHAAHAEELADRVGGFQSHVNLIAYNPIEEEEFQRPTRDRIEGFRRVLEGRGVAVSLRA 332

Query: 353 PRGLDILAACGQLKSLSKR 371
            RGLD  AACGQL+   ++
Sbjct: 333 SRGLDQDAACGQLRRSRQQ 351


>gi|298384050|ref|ZP_06993611.1| radical SAM enzyme, Cfr family [Bacteroides sp. 1_1_14]
 gi|298263654|gb|EFI06517.1| radical SAM enzyme, Cfr family [Bacteroides sp. 1_1_14]
          Length = 345

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/368 (35%), Positives = 196/368 (53%), Gaps = 29/368 (7%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            + K  L+GM   EL+  + ++G+P         QI  W+Y + +     M+++S + R 
Sbjct: 1   MMSKYPLLGMTLIELQSLVKRLGMPG----FAAKQIASWLYDKKVTSIDEMTNLSLKYRE 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LL Q++ +     V+E  S DGT K+L       +G    +E+VYIP+  R TLC+SSQV
Sbjct: 57  LLKQNYEVGAEAPVEEMRSVDGTVKYLY-----PVGENHFVESVYIPDDERATLCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG Q    NLTA +I+ Q+                          K++N+
Sbjct: 112 GCKMNCKFCMTGKQGYSANLTAHQIINQI-------------------HSLPERDKLTNV 152

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N + V K+L I + S G ++S +RIT+ST G    + R  EE    LAIS
Sbjct: 153 VMMGMGEPLDNLEEVLKALDILTGSYGYAWSPKRITVSTVGLRKGLRRFIEESDCHLAIS 212

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+     R  L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L
Sbjct: 213 LHSPVTAQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKEL 271

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K+L+G+  +INLI F+  PG     +D   +  F + +   G  + IR  RG DI AAC
Sbjct: 272 LKLLRGLDCRINLIRFHSIPGVALEGADMDTMTRFRDYLTTHGLFTTIRASRGEDIFAAC 331

Query: 363 GQLKSLSK 370
           G L +  +
Sbjct: 332 GMLSTAKQ 339


>gi|225011596|ref|ZP_03702034.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-2A]
 gi|225004099|gb|EEG42071.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-2A]
          Length = 358

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/364 (35%), Positives = 205/364 (56%), Gaps = 24/364 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +  + +EEL+E  +  G P      +  Q+++W++ +G+ DF+ M+++S   R+LL+
Sbjct: 14  KKDIRALSKEELQEFFVSQGAPS----FKGGQVYQWLWQKGVHDFELMTNLSLTHRNLLD 69

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            HF I +  I  ++ S DGT K  ++     +     +E+V IP  +R T CVSSQVGCS
Sbjct: 70  AHFEIKHINIDFQQRSTDGTIKNAVKLHDNLV-----VESVLIPTSTRTTACVSSQVGCS 124

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC T   K +RNL A+EI  QV+               +        R +SNIV M
Sbjct: 125 LDCTFCATAALKRMRNLNADEIYDQVVAM-------------DQQSKLYHQRPLSNIVFM 171

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N++NV  ++   +D+  L  S RRITLSTSG    I ++ ++ +   LA+SLH
Sbjct: 172 GMGEPLMNYNNVLAAIEKITDTEALGMSPRRITLSTSGIPKLIRKMADDKVKFGLAVSLH 231

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +   ++R  ++P  +K+PL  LI++  ++   +  + ITFEYV+ +G+ND   D   L+ 
Sbjct: 232 SARQEVRERIMPFAKKFPLTELIESLEYWYAYTKKQ-ITFEYVVWEGVNDLKEDIQALVG 290

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           + + IP+K+N+I +NP  G      +Q  I  +   + ++  S   R  RG+DI AACGQ
Sbjct: 291 LCRRIPSKVNIIQYNPIDGSSMKQGNQTVIDAYIAALTKARISVTYRRSRGVDIDAACGQ 350

Query: 365 LKSL 368
           L + 
Sbjct: 351 LANK 354


>gi|116071168|ref|ZP_01468437.1| hypothetical protein BL107_16020 [Synechococcus sp. BL107]
 gi|116066573|gb|EAU72330.1| hypothetical protein BL107_16020 [Synechococcus sp. BL107]
          Length = 348

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 186/379 (49%), Gaps = 41/379 (10%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN +    L+G    ELE+  +  G    H   R  QI  W+Y +G++    ++ + ++ 
Sbjct: 1   MNNV----LLGRSAAELEDWAIAQG----HKSFRGRQIHDWLYNKGVKSLSEITALPKQW 52

Query: 61  RHLLN-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           R  L  Q F +   ++V + ++ D T K LL            IETV IP   R T+C+S
Sbjct: 53  RTELEDQTFRVGRLKLVHQSVAADATTKLLL-----ATDDGETIETVGIPTDQRLTVCIS 107

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC + C FC TG   L R+L   EI+ QVL  R  +                  R+ 
Sbjct: 108 SQVGCPMACRFCATGKSGLQRSLATHEIVDQVLSVREAM-----------------DRRP 150

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE------ 233
           S+IV MGMGEPL N   V +++   +    L   +RRIT+ST G    + ++ E      
Sbjct: 151 SHIVFMGMGEPLLNSAAVLETIRCLNTD--LGIGQRRITVSTVGVPKTLPQLAELAMEKL 208

Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
                 LA+SLHA +  LR  L+P    YP + L+D CRHY  L+   R++FEY++L  +
Sbjct: 209 GRAQFTLAVSLHAPNQQLREELIPTAHAYPYDDLLDDCRHYLDLTGR-RVSFEYILLGEL 267

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND P  A  L   + G  + +NLI +NP    E+     + I  F   ++R G +  +R 
Sbjct: 268 NDHPEHAAELADRVGGFQSHVNLIAYNPIEEEEFKRPTTQRIEAFRRVLERRGIAVSLRA 327

Query: 353 PRGLDILAACGQLKSLSKR 371
            RGLD  AACGQL+    +
Sbjct: 328 SRGLDQNAACGQLRRQHLK 346


>gi|294783089|ref|ZP_06748413.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA]
 gi|294479967|gb|EFG27744.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA]
          Length = 358

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 203/380 (53%), Gaps = 34/380 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN  +K +++ + +EEL E L+ +G+     +    +++ W++ + IR+F  M+++S + 
Sbjct: 1   MNN-EKVNILNLTQEELTEFLVSLGL----KKFYGKEVFIWLHKKIIRNFDDMTNLSLKD 55

Query: 61  RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113
           R +L ++  I +  ++  ++S  D T K+L     +       IETV +  +       R
Sbjct: 56  REILKENAYIPFFNLLKHQVSKLDKTEKFLFELEDKGT-----IETVLLRHRDSKNKEIR 110

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            TLCVSSQVGC + CSFC TG    +RNL+  EIL QV                    + 
Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVER--------------RLR 156

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232
                ++N+V MGMGEPL N DN+  +LSI S+  G++ SKR+IT+STSG V  I + + 
Sbjct: 157 KKDESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKITISTSGIVSGIEKILL 216

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E+I + LA+SLH+  N+ R+ ++PIN+ +PLE L      Y   +   RITFEY+++   
Sbjct: 217 EKIPIELAVSLHSAINEKRDQIIPINKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNF 275

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351
           N S  DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R
Sbjct: 276 NISEVDANALADFIHQFDHVVNLIPYNEVEGVEHKRPSMKKIDRFYNYLKNVRKVNVTLR 335

Query: 352 TPRGLDILAACGQLKSLSKR 371
             +G DI  ACGQL+  +K+
Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355


>gi|302525208|ref|ZP_07277550.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           AA4]
 gi|302434103|gb|EFL05919.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
           AA4]
          Length = 368

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 185/373 (49%), Gaps = 28/373 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L    L  +   E  EA++++G        R  Q+    + R   D   M+DI    R  
Sbjct: 15  LPPRHLADLTVAERAEAVVELG----EKAFRAKQLSNHYFSRLTVDPAEMTDIPAASREK 70

Query: 64  LNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L           V   ++ DG  TRK L R     +     +E+V +    R TLC+SSQ
Sbjct: 71  LVADLMPPLLTEV-RALAADGGATRKTLWRAHDGTL-----LESVLMRYPDRATLCISSQ 124

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   L RNL+  EI+ QV  A +++ D           +P    ++SN
Sbjct: 125 AGCGMACPFCATGQGGLDRNLSTAEIVDQVRDAAAVMRD---------GSMPGGPGRLSN 175

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEPL N+  V  ++   +D    GL   +R +T+ST G  P I ++ +E + V 
Sbjct: 176 IVFMGMGEPLANYKRVVAAVRRITDPSPAGLGIGQRSVTVSTVGLAPAIRKLADEKMQVR 235

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLH   ++LR+ LVP+N ++ ++ ++ A R+Y   S   R++ EY +++ IND P  
Sbjct: 236 LAVSLHTPDDELRDTLVPVNNRWSVDEVLSAARYYADTSGR-RVSIEYALIRDINDQPWR 294

Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           A  L K L+   G    +N+IP NP PG ++  S +     F   +   G +  +R  RG
Sbjct: 295 AELLAKRLRKHLGQLVHVNVIPLNPTPGSKWDASPKPVEREFVRLVNAGGVACTVRDTRG 354

Query: 356 LDILAACGQLKSL 368
            DI AACGQL + 
Sbjct: 355 QDIAAACGQLAAE 367


>gi|294646654|ref|ZP_06724280.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CC 2a]
 gi|292637993|gb|EFF56385.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CC 2a]
          Length = 382

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 198/367 (53%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 39  MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 94

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     VDE  S DGT K+L +     +G    +E+VYIP+  R TLCVSSQVG
Sbjct: 95  LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 149

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                          K++N+V
Sbjct: 150 CKMNCKFCMTGKQGYTANLTASQIMNQI-------------------HSLPERDKLTNVV 190

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L + + + G ++S +RITLST G    + R  EE    LAISL
Sbjct: 191 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 250

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R  L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 251 HSPLTVQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 309

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +D   +  F + +   G  + IR+ RG DI AACG
Sbjct: 310 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 369

Query: 364 QLKSLSK 370
            L +  +
Sbjct: 370 MLSTAKQ 376


>gi|78778287|ref|YP_394602.1| hypothetical protein Suden_2093 [Sulfurimonas denitrificans DSM
           1251]
 gi|123727504|sp|Q30NR4|RLMN_SULDN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78498827|gb|ABB45367.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 356

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 202/379 (53%), Gaps = 42/379 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SL+    +EL+               R  QI+ W+Y    + F  M +I Q+++  L 
Sbjct: 2   KPSLLDFRLKELQA--------NIKPSFRAKQIYGWLYHNYAQSFDDMKNIPQQLKDELA 53

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------------- 112
           + + +   +IV +++S DGT K+L             IETV++  K              
Sbjct: 54  KSYVVNLLKIVKKELSNDGTIKYLFELQD-----GKTIETVWLKMKDEQIDEEGCVTQEA 108

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           + T+CVS+QVGC + C+FC T      R+LTA EI+ QV+  +                 
Sbjct: 109 KYTICVSTQVGCKVGCAFCLTAKGGFTRDLTAGEIVAQVVALKKDNDH------------ 156

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
                ++ NIV MGMGEPL N DN+ +++ I  +  GL  S +R T+STSG    I R+G
Sbjct: 157 --KHNRMINIVYMGMGEPLDNLDNLSRAIEIFKEEDGLCISGKRQTVSTSGLSNKIDRLG 214

Query: 233 E-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           E ++GV +AISLHAV ++LR  L+P+N+ + +  +I+A + +P +   +R+ FEY+++K 
Sbjct: 215 EMDLGVHIAISLHAVDDELRTELIPMNKAHNISSIIEAVKRFP-IDTRKRVMFEYLVIKN 273

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
            ND    A  L+K+L GI AK+NLI FNP+P   Y    + D++ F E +   G    IR
Sbjct: 274 KNDDLGSAKKLVKLLSGIKAKVNLIYFNPYPDTPYERPQKSDMIAFQEYLINHGLLCTIR 333

Query: 352 TPRGLDILAACGQLKSLSK 370
             +G+DI AACGQLK  ++
Sbjct: 334 DSKGIDISAACGQLKEKTQ 352


>gi|159904144|ref|YP_001551488.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
           MIT 9211]
 gi|205829806|sp|A9BCH2|RLMN_PROM4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|159889320|gb|ABX09534.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
           MIT 9211]
          Length = 356

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 190/377 (50%), Gaps = 37/377 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK  L+G    +LE+   + G P      R  QI +W+Y +G+R  + +S + +  R  L
Sbjct: 9   KKVVLLGQNVAKLEKLAQEYGEPA----FRGRQIHEWLYQKGVRKLEEISVLPKLWRTTL 64

Query: 65  NQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           +         E V   ++ DGT K LL    R       IE V IP  SR T CVSSQVG
Sbjct: 65  SDQGVCTGRLEEVKRLVANDGTIKLLLETSDR-----ESIEAVGIPTNSRLTTCVSSQVG 119

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CS+ C FC TG     R+L   EI+ QVL  R                  +  R+ S+IV
Sbjct: 120 CSMGCRFCATGKGGFQRSLEVHEIVDQVLSIRE-----------------AFDRRPSHIV 162

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIG 236
            MGMGEPL N ++V +S+S  ++   L   +RRIT+ST G V  + ++ E        + 
Sbjct: 163 FMGMGEPLLNIESVLESISCLNND--LGIGQRRITVSTVGVVNTLPQLAELALAKLGRVQ 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LA+SLHA +  LR +LVP  + YP++ L+  CRHY  ++   RI+FEY++L  +ND  
Sbjct: 221 FTLALSLHAPNQHLREMLVPSAKVYPIQDLLSDCRHYLDITGR-RISFEYILLATVNDKV 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L  ++ G  + +NLI +NP    +Y       I  F   ++  G +  +R  RGL
Sbjct: 280 EHAEELADLISGFQSHVNLIAYNPIDEEDYQRPSLARINRFMTVLQSRGVAVSLRASRGL 339

Query: 357 DILAACGQLKSLSKRIP 373
           D  AACGQL+    R+ 
Sbjct: 340 DQDAACGQLRHQHTRLD 356


>gi|237739801|ref|ZP_04570282.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
 gi|229423409|gb|EEO38456.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31]
          Length = 358

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 203/380 (53%), Gaps = 34/380 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN  +K +++ + +EEL E L+ +G+     +    +++ W++ + IR+F  M+++S + 
Sbjct: 1   MNN-EKVNILNLTQEELTEFLVSLGL----KKFYGKEVFIWLHKKIIRNFDDMTNLSLKD 55

Query: 61  RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113
           R +L ++  I +  ++  ++S  D T K+L     +       IETV +  +       R
Sbjct: 56  REILKENAYIPFFNLLKHQVSKLDKTEKFLFELEDKGT-----IETVLLRHRDSKNKEIR 110

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            TLCVSSQVGC + CSFC TG    +RNL+  EIL QV                    + 
Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVER--------------RLR 156

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232
                ++N+V MGMGEPL N DN+  +LSI S+  G++ SKR+IT+STSG V  I + + 
Sbjct: 157 KKDESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKITISTSGIVSGIEKILL 216

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E+I + LA+SLH+  ND R+ ++PIN+ +PLE L      Y   +   RITFEY+++   
Sbjct: 217 EKIPIELAVSLHSAINDKRDQIIPINKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNF 275

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351
           N S  DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R
Sbjct: 276 NISEADANALADFIHQFDHVVNLIPYNEVEGVEHKRPSMKKIDRFYNYLKNVRKVNVTLR 335

Query: 352 TPRGLDILAACGQLKSLSKR 371
             +G DI  ACGQL+  +K+
Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355


>gi|261880280|ref|ZP_06006707.1| cfr family radical SAM enzyme [Prevotella bergensis DSM 17361]
 gi|270332967|gb|EFA43753.1| cfr family radical SAM enzyme [Prevotella bergensis DSM 17361]
          Length = 359

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/376 (34%), Positives = 194/376 (51%), Gaps = 33/376 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+ L+GM   EL+     +G+P         QI  W+YV+ +R    M++IS+  R  
Sbjct: 1   MNKKILLGMTPTELKAVAKSLGMPA----FTGDQIANWMYVQHVRSIDEMTNISKTNRAC 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE---------IETVYIPEKSRG 114
           L + + I   + +D + S DGT K+L                      +ETVYIP+  R 
Sbjct: 57  LAEQYEIGCVDPIDAQHSEDGTIKYLFPVRTTSYKEGEAGNEKTSPKFVETVYIPDGERA 116

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           TLCVS +VGC + C FC TG Q     L+A +IL Q+                       
Sbjct: 117 TLCVSCEVGCKMNCLFCQTGKQGFQGYLSAADILNQIYSL-------------------P 157

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
               ++NIV MG GEP+ N DNV ++  I +     ++S +RIT+ST G    + R  EE
Sbjct: 158 ERESLTNIVFMGQGEPMDNLDNVLRTTEILTAPYAFAWSPKRITVSTIGIKNELKRFIEE 217

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               LA+SLH+  ++ R  L+PI R  P+E ++D  R+Y   S+ RR++FEY++ +GIND
Sbjct: 218 SDCHLAVSLHSPFHEQRAELMPIERTTPVEEIVDLLRNY-DFSHQRRLSFEYIVFEGIND 276

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           S   A  ++++L+G+  ++NLI F+P P      +D K + +F   +   G  + IR  R
Sbjct: 277 SKEHARAIVRLLEGLFCRVNLIRFHPIPHVNLHGADDKQMESFRNYLTTHGIHTTIRASR 336

Query: 355 GLDILAACGQLKSLSK 370
           G DILAACG L +  K
Sbjct: 337 GQDILAACGLLNTSRK 352


>gi|303233443|ref|ZP_07320111.1| 23S rRNA m2A2503 methyltransferase [Atopobium vaginae PB189-T1-4]
 gi|302480451|gb|EFL43543.1| 23S rRNA m2A2503 methyltransferase [Atopobium vaginae PB189-T1-4]
          Length = 403

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 189/374 (50%), Gaps = 27/374 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            + +L  +  ++L   L  + +P      R  QI  W++   I  F  M++IS+ +R  L
Sbjct: 55  PRTNLRRLSHDDLVYQLKLMHLPA----FRAKQIEDWLWHYNIGSFDDMTNISKALRAQL 110

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + F +  P  +++++S DG+RK+LL          + +E V +P   + ++CVSSQ GC
Sbjct: 111 AKQFYLYAPRAINKQVSQDGSRKYLLLLED-----GISVECVGMPNGDKLSVCVSSQAGC 165

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC TG   L RNL A+EI  Q L  R                    G +ISNIV+
Sbjct: 166 AMGCVFCATGKAGLRRNLFADEIYQQALFIRDDFD----------------GMRISNIVL 209

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
           MG GEPL N+    ++L + ++ +GL    R +TLST G +PNIA+   EE    LA+SL
Sbjct: 210 MGQGEPLTNYTQALRALRLFNNPLGLGIGARHLTLSTCGIIPNIAKFAQEEEQFTLAVSL 269

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R+ L+P  +K+ L  L +  + Y   +   R ++EY ++KG+ND+P +   L 
Sbjct: 270 HSAVQKTRDYLMPGVKKFSLVNLYNMMQTYVQKTKR-RPSYEYALIKGVNDTPEELQALC 328

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
              +G    +NLI  N      +  + +K    F   +   G  + IR  RG DI AACG
Sbjct: 329 DFCRGTLCHVNLIQLNEIDDSPFKPTSEKRAQEFVRALNACGVEATIRVSRGQDIDAACG 388

Query: 364 QLKSLSKRIPKVPR 377
           QL+  S  + K  R
Sbjct: 389 QLQQRSCPLNKQKR 402


>gi|15605915|ref|NP_213292.1| hypothetical protein aq_416 [Aquifex aeolicus VF5]
 gi|81556300|sp|O66732|RLMN_AQUAE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|2983096|gb|AAC06702.1| hypothetical protein aq_416 [Aquifex aeolicus VF5]
          Length = 348

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 139/370 (37%), Positives = 211/370 (57%), Gaps = 32/370 (8%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
               EEL++   ++G+       R  Q+++W+Y + + DF+ M+D+ ++ R LL +HF+ 
Sbjct: 6   NYTLEELKKRFTELGLEP----YRAKQVFRWVYKKFVTDFEKMTDLGKKHRELLKEHFAF 61

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
              E +D   + D   K+L +     I     +ETV I E+   TLCVSSQ+GC++ C+F
Sbjct: 62  HPLEKLDRVEAPDA-VKYLFKTKDGHI-----LETVLIKERDHYTLCVSSQIGCAVGCTF 115

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C T    L RNL+  EI+ Q L  +  LG+                 KI N+V MGMGEP
Sbjct: 116 CATALDGLKRNLSTAEIIDQYLQVQQDLGE----------------EKIRNVVFMGMGEP 159

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHAVS 247
           L N++NV+K++ I     GL  SKRRIT+STSG V  I R+ ++     V LA+SL+AVS
Sbjct: 160 LANYENVRKAVEIMVSPEGLDLSKRRITISTSGIVAQIKRMAQDPVMKEVNLAVSLNAVS 219

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL- 306
              R  L+P+ +   LE L++  ++YP L   RRIT EYV++KG+NDSP DA  L K++ 
Sbjct: 220 QKKREELMPLTKTNTLEELMEVLKNYP-LPKYRRITLEYVLIKGVNDSPNDAERLAKLIG 278

Query: 307 -KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                 K+NLIPFNP P   Y      DI+ F + + + G S+ +R  +G+++  ACGQL
Sbjct: 279 RHKKKFKVNLIPFNPDPNLPYERPALTDIMKFQKVLWKYGISNFVRFSKGVEVFGACGQL 338

Query: 366 KSLSKRIPKV 375
           ++   ++ +V
Sbjct: 339 RTQRLQLQRV 348


>gi|313676931|ref|YP_004054927.1| 23S rRNA m(2)a-2503 methyltransferase [Marivirga tractuosa DSM
           4126]
 gi|312943629|gb|ADR22819.1| 23S rRNA m(2)A-2503 methyltransferase [Marivirga tractuosa DSM
           4126]
          Length = 360

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 197/367 (53%), Gaps = 24/367 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L K+ +  M  + + E L   G        R  QI++W++++    F+ M+++S+ +R  
Sbjct: 17  LSKKDIRKMSIDAIAEDLTASG----EKAFRAKQIYEWLWMKSAASFEEMTNLSKNLREW 72

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+Q++ I    I D+++S D T K   R          E+E V IP ++R T CVSSQVG
Sbjct: 73  LDQNYCINRITIADKQLSSDRTIKVAFRLHD-----GNEVEGVLIPTENRMTACVSSQVG 127

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL+C FC TG  K +RNL A EI  QV++ + L                     +SNIV
Sbjct: 128 CSLSCKFCATGYLKRMRNLEAAEIYDQVVMIKEL-------------AETHYDMPLSNIV 174

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
            MGMGEPL N+ N+ +S+   +   GL  S +RIT+ST+G    I ++ ++     LA+S
Sbjct: 175 YMGMGEPLLNYKNMMESIEHITSEKGLHMSPKRITVSTAGISKMIKKLADDDAKFNLALS 234

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +++ R+ ++ IN    L +L +A  +Y   +   R+TFEY +    NDS  DA  L
Sbjct: 235 LHAANDEKRSQIMSINDSNNLPVLREALEYYHSKT-KNRVTFEYCVFNNFNDSLEDAKEL 293

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +  K +PAK+NLI +NP    ++  +D+  +  F+  ++  G    +R  RG DI AAC
Sbjct: 294 WQFTKYVPAKVNLIEYNPIDQADFTNTDEDKLDKFAAFLEDRGVIVNVRRSRGKDIDAAC 353

Query: 363 GQLKSLS 369
           GQL +  
Sbjct: 354 GQLANKH 360


>gi|87125371|ref|ZP_01081217.1| hypothetical protein RS9917_08135 [Synechococcus sp. RS9917]
 gi|86167140|gb|EAQ68401.1| hypothetical protein RS9917_08135 [Synechococcus sp. RS9917]
          Length = 350

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 183/369 (49%), Gaps = 37/369 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67
           L+G   EELE+  +  G P      R  Q+  W+Y +G      ++ + +  R  L  Q 
Sbjct: 10  LLGRSAEELEQWAVAQGQPA----FRGRQLHDWLYAKGAETLAAITVLPKAWRLALEAQG 65

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             I   +  D +++ D T K LL+     +     IETV IP   R T+CVSSQVGC + 
Sbjct: 66  VRIGRLQEQDRRVAADATTKLLLQTDDGEL-----IETVGIPTDQRLTVCVSSQVGCPMA 120

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG   L R+L   EI+ QVL  R+++                  R+ S++V MGM
Sbjct: 121 CRFCATGQGGLQRSLATHEIVDQVLSVRAVM-----------------DRRPSHVVFMGM 163

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240
           GEPL N D V  ++    +   L   +RRIT+ST G    + ++ E            LA
Sbjct: 164 GEPLLNIDAVLGAIRCLHND--LGIGQRRITVSTVGVPRTLPQLAELAMARLGRAQFTLA 221

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +  LR  L+P    YP + L+  CRHY  L+   R++FEY++L G+ND+P  A 
Sbjct: 222 VSLHAPNQALREELIPTAHAYPYDDLLQDCRHYLELTGR-RVSFEYILLGGLNDAPTHAE 280

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L   + G  + +NLI +NP     +     + I  F   ++R G +  +R  RGLD  A
Sbjct: 281 ELADRVGGFQSHVNLIAYNPIEEGAFQRPSAERINGFRRVLERRGVAVSLRASRGLDQDA 340

Query: 361 ACGQLKSLS 369
           ACGQL+  S
Sbjct: 341 ACGQLRRRS 349


>gi|225021120|ref|ZP_03710312.1| hypothetical protein CORMATOL_01132 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946120|gb|EEG27329.1| hypothetical protein CORMATOL_01132 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 389

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 188/376 (50%), Gaps = 31/376 (8%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             +  +    +  ++   AL  +G+P    + R +Q+ K  Y R   D + M+D+   VR
Sbjct: 35  RAMPPKHFADLTPDQRIAALADLGLP----KFRANQLAKHYYGRLEADPRTMTDLPAAVR 90

Query: 62  HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             + +         V +  + DG T K L R     +     +E+V +   +R TLC+SS
Sbjct: 91  DAVAEALFPTLMTPVRQVTADDGETHKTLWRLHDGTL-----LESVLMRYPNRATLCISS 145

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG   L RNL+  EI+ QV  A   +               + G ++S
Sbjct: 146 QAGCGMACPFCATGQAGLDRNLSTGEIIDQVRSAARTM--------------AAEGNRLS 191

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           NIV MGMGEPL N+  V  ++   +     G   S+R +T+ST G  P I ++ +E + V
Sbjct: 192 NIVFMGMGEPLANYKRVVSAVRQITAPVPQGFGISQRNVTVSTVGMAPMIRKLADENLSV 251

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLH   ++LR+ LVP+N ++ +  ++DA  +Y   S   R++ EY +++ IND   
Sbjct: 252 TLAVSLHTPDDELRDTLVPVNNRWSVAEVLDAAAYYADRSGR-RVSIEYALIRDINDQGW 310

Query: 298 DALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            A  L K L    G  A +NLIP NP PG ++  S ++    F   +   G +  +R  +
Sbjct: 311 RADLLGKKLHKALGSKAHVNLIPLNPTPGSKWDASPREQQAEFVRRVIAQGVTCTVRDTK 370

Query: 355 GLDILAACGQLKSLSK 370
           G +I AACGQL + ++
Sbjct: 371 GQEIAAACGQLAAENR 386


>gi|239618306|ref|YP_002941628.1| radical SAM enzyme, Cfr family [Kosmotoga olearia TBF 19.5.1]
 gi|239507137|gb|ACR80624.1| radical SAM enzyme, Cfr family [Kosmotoga olearia TBF 19.5.1]
          Length = 343

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 195/369 (52%), Gaps = 30/369 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+ M  +EL + L+  G      + R SQI+ WIY + + +F  M+++ ++ R  L+  F
Sbjct: 3   LLEMTLDELRKVLVDEGYE----KYRASQIFDWIYKKKVLNFSNMTNLPKDFRKFLSGTF 58

Query: 69  SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
                 IV   +S  DGT K+L +           IE+V +      T C+S+QVGC L 
Sbjct: 59  RYPEMTIVRRSLSKIDGTEKFLWKLHD-----GEFIESVILRHPDHTTFCISTQVGCQLG 113

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG     RNL+  EI+ QV+     +G                 + ++NIV MGM
Sbjct: 114 CIFCATGMSGFKRNLSVSEIVGQVIFMEKSMG-----------------KNVTNIVFMGM 156

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEP  N DNV KS+ I  +  G +   R  T+ST+G    I R+ +  + V L++SLHA 
Sbjct: 157 GEPFLNTDNVFKSIEILHEPAGRNLGIRHFTISTAGIPEGIIRLADSGMDVRLSLSLHAA 216

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +++ R++L+PIN++Y ++ L+ +  +Y   +N  RIT EY+++ GINDS  DA  L K+ 
Sbjct: 217 TDEKRSMLMPINKRYNIQQLMASLEYYQRKTNR-RITIEYILIDGINDSIEDAKQLAKLF 275

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           K +   +N+I  NP          ++ +  F+  +K+ G  + IRT +G DI AACGQL+
Sbjct: 276 KHLKIFVNIIAINPVVPT-LKRPSREKVERFAIELKKHGIEAAIRTEKGSDIDAACGQLR 334

Query: 367 SLSKRIPKV 375
             + +  + 
Sbjct: 335 RKNLQEERA 343


>gi|332886413|gb|EGK06657.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas
           mossii DSM 22836]
          Length = 341

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 195/370 (52%), Gaps = 29/370 (7%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  E+    + + G+P    R    QI  W+Y + I     M+++S   R LL++ + I 
Sbjct: 1   MTMEDFYGVVGECGLP----RFSAKQIADWVYKKRITSIDEMTNLSVANRALLSEKYDIG 56

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
               ++ + S DGT K+L +     +     IE V IPE  R TLCVSSQVGC + C FC
Sbjct: 57  RYNPLEFQQSVDGTVKYLFKTEKEKL-----IEAVMIPEDDRATLCVSSQVGCKMNCLFC 111

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG Q    NLTA EIL Q+   R                       ++N+V MGMGEPL
Sbjct: 112 MTGKQGFNGNLTANEILNQLYSVRE-------------------AESLTNVVFMGMGEPL 152

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251
            N++ +KK+L I +   G+++S +RIT+ST+G  P + R  +E    LAIS+H+   + R
Sbjct: 153 DNYEELKKTLEIMTADYGMAWSPKRITVSTTGVTPKLKRFLDESNAHLAISIHSPEKEQR 212

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             ++P  + +P+  ++D  R Y   +  RR++FEY+M    NDS   A  L ++L+G+  
Sbjct: 213 LSIMPAEKAFPITGVMDLLRQY-DWTKQRRLSFEYIMFDNFNDSLIHAKELTQMLRGVEC 271

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           ++NLI F+  P  +   S ++ +  F + + + G +S IR  RG DI AACG L ++   
Sbjct: 272 RVNLIRFHAIPNVDLKTSTKEKMEAFRDYLTKKGVTSTIRASRGEDIFAACGMLSTMKGD 331

Query: 372 IPKVPRQEMQ 381
                +++++
Sbjct: 332 ALSASKKDLE 341


>gi|218261353|ref|ZP_03476207.1| hypothetical protein PRABACTJOHN_01873 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224074|gb|EEC96724.1| hypothetical protein PRABACTJOHN_01873 [Parabacteroides johnsonii
           DSM 18315]
          Length = 343

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/369 (34%), Positives = 186/369 (50%), Gaps = 29/369 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  L+GM  EEL+    + G+P         QI  W+Y + +     M++I+   R LL
Sbjct: 3   EKRRLLGMTLEELKGVASEAGLPG----YAAKQIADWLYKKKVTSIAAMTNIAAAKRTLL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + F +      D   S DGT K+L        G    +E+VYIP + R TLCVSSQVGC
Sbjct: 59  EESFEVGAVPPSDLMKSVDGTIKYLY-----PAGPGNFVESVYIPTEDRATLCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG Q   +NL+A EIL Q+                          +++NIV 
Sbjct: 114 KMNCLFCMTGKQGFTKNLSANEILNQI-------------------QSLPETEELTNIVF 154

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N D + K L I +   G ++S +RIT+ST G    + R  EE    LA+SLH
Sbjct: 155 MGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVAKGLKRFLEESECHLAVSLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +     R  L+P+ + +P   +I+  + Y   ++ RRI+FEY++ K +ND  + A  L+ 
Sbjct: 215 SPYPGERLSLMPVEKAFPARDIIETIKQY-DFTHQRRISFEYIVFKNLNDDLQHAKALVC 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  +P ++NLI F+  P      SD   +  F + +  +G    IR  RG DI AACG 
Sbjct: 274 LLDKVPCRVNLIRFHAIPNVSLESSDLARMEAFRDTLNAAGIVCTIRASRGEDIFAACGM 333

Query: 365 LKSLSKRIP 373
           L +  K+  
Sbjct: 334 LSTAKKQQK 342


>gi|291557812|emb|CBL34929.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium siraeum V10Sc8a]
          Length = 338

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/369 (32%), Positives = 205/369 (55%), Gaps = 33/369 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K  ++ + +EELEE +L +G      + R  QI+ W+++  + +F  M+++S ++R  
Sbjct: 1   MEKTDILSLSKEELEEKILAMG----EKKFRAGQIYDWLHINKVEEFSKMTNLSAQLREK 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L+  F I   +I    +S  D T K+L            ++ETV +  K   ++C+S+QV
Sbjct: 57  LDDIFWINSLKIQKRLVSDIDNTVKYLYGLSD-----GEKVETVLMEYKHGNSICISTQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +     VRNL   E+LLQ+  +                     GRKI+++
Sbjct: 112 GCKMGCKFCASTKAGFVRNLEPSEMLLQIYESER-----------------DSGRKINHV 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V+MG+GEPL N DNV K L + S       S R +++ST G V  I  + + ++G+ L++
Sbjct: 155 VLMGIGEPLDNLDNVVKFLRLLSAKD--DMSLRHVSVSTCGLVNRIYELADLKLGITLSV 212

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +N+LR+ ++PIN ++ +E L++AC++Y   +  RRI++E+ ++ G+ND+ + A  
Sbjct: 213 SLHAPTNELRSSIMPINDRFRIEELMEACKYYFN-TTGRRISYEFALIDGVNDNRQSADA 271

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+K+LKG    +NLIP N      +  S    +  + + +   G ++ +R   G DI AA
Sbjct: 272 LLKLLKGQNCHVNLIPVNEIKEGVFKRS--ASVEKYKQMLIDGGLNATVRRTLGADISAA 329

Query: 362 CGQLKSLSK 370
           CGQL+  +K
Sbjct: 330 CGQLRRDNK 338


>gi|326382905|ref|ZP_08204595.1| ribosomal RNA large subunit methyltransferase N [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198495|gb|EGD55679.1| ribosomal RNA large subunit methyltransferase N [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 371

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 186/374 (49%), Gaps = 27/374 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L  +    +  +   +A+  +G+P    + R +Q+ K  Y R   D   M+D+    R  
Sbjct: 18  LPPKHFADLDEQGRIDAVADLGLP----KFRANQLAKQYYGRLNADVDEMTDLPAGKRDA 73

Query: 64  LNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           + +  F  +   +       D TRK L R     +     +E+V +    R TLC+SSQ 
Sbjct: 74  VGEKLFPTLMTPVRHISCDDDSTRKTLWRLHDGTL-----LESVLMRYPERNTLCISSQA 128

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A   L D    E            ++SNI
Sbjct: 129 GCGMACPFCATGQGGLDRNLSTAEIVDQVRAAARALRDGEVGEPG----------RLSNI 178

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V  ++   +     G   S R +T+ST G  P I R+ +E + V L
Sbjct: 179 VFMGMGEPLANYKRVVDAVRKITSPSPDGFGISARSVTVSTVGLAPAIRRLADEGLSVTL 238

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ +  +++A R+Y   S  RR++ EY +++ +ND P  A
Sbjct: 239 AVSLHTPDDELRDTLVPVNNRWSVAEVLEAARYYAD-STGRRVSIEYALIRDVNDQPWRA 297

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L+   G    +NLIP NP PG E+  S +     F   ++  G S  +R  RG 
Sbjct: 298 DLLGKKLRQALGSLVHVNLIPLNPTPGSEWDASPKPVEAEFVRRVREHGVSCTVRDTRGQ 357

Query: 357 DILAACGQLKSLSK 370
           +I AACGQL +  K
Sbjct: 358 EIAAACGQLAAEEK 371


>gi|330752065|emb|CBL80576.1| radical SAM superfamily protein, UPF0063 [uncultured Flavobacteria
           bacterium]
          Length = 349

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 190/367 (51%), Gaps = 23/367 (6%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK  + G+ +E + E              R  Q+++W++ +    F  M+++S   R LL
Sbjct: 4   KKRDIRGLSQEAIIEFFEAH----NEQSFRAKQVYQWLWQKSASSFDEMTNLSISTRALL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N +F+    E+   + S DGT K  ++           +E+V IP + R T CVSSQVGC
Sbjct: 60  NANFNFNLLEVDLMQRSKDGTIKNAVKLHDGAF-----VESVLIPTEKRITACVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           SL C+FC T + K +RNL  +EI  QV++  +   ++              GR ++NIV 
Sbjct: 115 SLDCTFCATASLKRMRNLGLDEIYDQVVVIHNQGKEY-------------FGRPLTNIVF 161

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N++NV  ++   +D  GL  S RRITLST G    I R+ ++ +   LAISL
Sbjct: 162 MGMGEPLLNYNNVLAAIEKITDPKGLGLSPRRITLSTIGVPKLIKRMADDGVKFNLAISL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+   + R  L+P+  K    + +     Y      R +TFEYV+ K +ND+ +D   L 
Sbjct: 222 HSAIEEKRAKLMPLAHKSATLVDLRESLQYWYAKTGRGVTFEYVIWKDLNDTEQDVKALA 281

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K    IP K+N+I +NP     Y  + Q+ +  + E ++  G  + IR  RG DI AACG
Sbjct: 282 KFCGAIPTKVNIIQYNPIDNGPYTQASQEAVNMYKETLESKGIITTIRHSRGQDIDAACG 341

Query: 364 QLKSLSK 370
           QL +  +
Sbjct: 342 QLANKVE 348


>gi|317125387|ref|YP_004099499.1| 23S rRNA m(2)A-2503 methyltransferase [Intrasporangium calvum DSM
           43043]
 gi|315589475|gb|ADU48772.1| 23S rRNA m(2)A-2503 methyltransferase [Intrasporangium calvum DSM
           43043]
          Length = 393

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 182/370 (49%), Gaps = 19/370 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +E +  +G    H   R  Q+    + R + D + M+D+ + VR  L +
Sbjct: 35  RHLADLTPAERKEVVESLG----HQGFRARQLSTHYFERLVDDPEQMTDLPKAVRADLVR 90

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                    +  + + DG T K+  R     I     +E+V +   +R T+C+SSQ GC 
Sbjct: 91  DLLPPLLAPIVRRQADDGQTMKYAWRLHDGAI-----VESVLMRYPNRVTICISSQAGCG 145

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RN++  EI+ QV+ A   L         +G     +  ++SN+V M
Sbjct: 146 MNCPFCATGQAGLTRNMSTAEIVEQVVWAARALRTGELAGGQDGDREHPL--RVSNVVFM 203

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGE L N+     ++   +D    GL  S R IT+ST G VP I ++  E I V LA+S
Sbjct: 204 GMGEALANYGAAIGAIRRLTDPAPDGLGISARGITMSTVGLVPAIDKLAAEGIPVTLALS 263

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVPIN ++ ++  IDA   Y   +  RR++ EY +++ IND    A  L
Sbjct: 264 LHAPDDELRDELVPINTRWKVDEAIDAAHRYYE-TTGRRVSIEYALIRDINDQGWRADLL 322

Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            + L         +N IP NP PG ++  S       F E ++  G  + IR  RG DI 
Sbjct: 323 AQKLNRRGRGWVHVNPIPLNPTPGSKWTASRPGVEQNFVERLRAHGIPTTIRDTRGQDID 382

Query: 360 AACGQLKSLS 369
            ACGQL + +
Sbjct: 383 GACGQLAAAT 392


>gi|119717461|ref|YP_924426.1| radical SAM protein [Nocardioides sp. JS614]
 gi|205829791|sp|A1SLQ4|RLMN_NOCSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|119538122|gb|ABL82739.1| 23S rRNA m(2)A-2503 methyltransferase [Nocardioides sp. JS614]
          Length = 376

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 181/371 (48%), Gaps = 27/371 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +  +E      ++G+P      R  Q+    + R + D   M+D+    R  L  
Sbjct: 24  RHLADLAPDERTAYAKELGLPG----FRAKQLSTHYFSRLVDDPDQMTDLPAGQRAELVA 79

Query: 67  HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                    +    +  GT RK L R     +     +E+V +    R T+CVSSQ GC 
Sbjct: 80  GLLPGLMTPLRTMEADRGTTRKTLWRLFDGAL-----VESVLMRYPDRATMCVSSQAGCG 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RN++  EI+ QV+          G   +    +P    ++SN+V M
Sbjct: 135 MACPFCATGQGGLQRNMSTAEIVEQVVA---------GARSLARGEVPGGPGRVSNVVFM 185

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N+  V  ++   +D    GL  S R +T+ST G VP + ++ +E I V LA+S
Sbjct: 186 GMGEPLANYKAVLGAVRRLTDPAPDGLGMSARGVTVSTVGLVPRMRQLADEGIPVTLALS 245

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LRN LVPIN ++ +   ++A  +Y  ++   R++ EY M++GIND    A  L
Sbjct: 246 LHAPDDELRNELVPINTRFSVAETVEAAWNYAKVTKR-RVSIEYAMMRGINDQAWRADLL 304

Query: 303 IKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
             +L+G        +NLIP NP PG ++  SD  D   F   ++     + +R  RG +I
Sbjct: 305 GDVLRGYGDWGWVHVNLIPLNPTPGSKWTASDPADEREFVRRLEAKAIPTTVRDTRGREI 364

Query: 359 LAACGQLKSLS 369
             ACGQL +  
Sbjct: 365 DGACGQLAATE 375


>gi|21223996|ref|NP_629775.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
           coelicolor A3(2)]
 gi|256784928|ref|ZP_05523359.1| hypothetical protein SlivT_10600 [Streptomyces lividans TK24]
 gi|289768821|ref|ZP_06528199.1| cfr family radical SAM enzyme [Streptomyces lividans TK24]
 gi|81556653|sp|O86754|RLMN_STRCO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|3319741|emb|CAA19907.1| conserved hypothetical protein SC6A9.22c [Streptomyces coelicolor
           A3(2)]
 gi|289699020|gb|EFD66449.1| cfr family radical SAM enzyme [Streptomyces lividans TK24]
          Length = 368

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 185/374 (49%), Gaps = 27/374 (7%)

Query: 4   LKKE--SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           +KK    L  +   E +EA+  IG        R  Q+ +  + R     +  +DI    R
Sbjct: 15  VKKPPRHLADLTPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHAPEQWTDIPAGSR 70

Query: 62  HLLNQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
             L +        +V   +S D   TRK L +     +     +E+V +    R T+C+S
Sbjct: 71  EGLREALLPELMTVV-RHLSTDQGTTRKTLWKLFDGTL-----VESVLMRYPDRVTMCIS 124

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ GC + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++
Sbjct: 125 SQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARL 175

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARV-GEEIG 236
           SNIV MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP I R  GE   
Sbjct: 176 SNIVFMGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFTGEGFK 235

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LAISLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   R++ EY +++ IND  
Sbjct: 236 CRLAISLHAPDDELRDTLVPVNTRWKVREVLDAGFEYAAKSGR-RLSIEYALIRDINDQA 294

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
                L ++L+G P  +NLIP NP PG ++  S  +D   F E I   G    IR  RG 
Sbjct: 295 WRGDRLGRLLRGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQ 354

Query: 357 DILAACGQLKSLSK 370
           +I  ACGQL +  +
Sbjct: 355 EIDGACGQLAASER 368


>gi|305680861|ref|ZP_07403668.1| 23S rRNA m2A2503 methyltransferase [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659066|gb|EFM48566.1| 23S rRNA m2A2503 methyltransferase [Corynebacterium matruchotii
           ATCC 14266]
          Length = 385

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 188/376 (50%), Gaps = 31/376 (8%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             +  +    +  ++   AL  +G+P    + R +Q+ K  Y R   D + M+D+   VR
Sbjct: 31  RAMPPKHFADLTPDQRIAALADLGLP----KFRANQLAKHYYGRLEADPRTMTDLPAAVR 86

Query: 62  HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             + +         V +  + DG T K L R     +     +E+V +   +R TLC+SS
Sbjct: 87  DAVAEALFPTLMTPVRQVTADDGETHKTLWRLHDGTL-----LESVLMRYPNRATLCISS 141

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG   L RNL+  EI+ QV  A   +               + G ++S
Sbjct: 142 QAGCGMACPFCATGQAGLDRNLSTGEIIDQVRSAARTM--------------VAEGSRLS 187

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           NIV MGMGEPL N+  V  ++   +     G   S+R +T+ST G  P I ++ +E + V
Sbjct: 188 NIVFMGMGEPLANYKRVVSAVRQITAPVPQGFGISQRNVTVSTVGMAPMIRKLADENLSV 247

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLH   ++LR+ LVP+N ++ +  ++DA  +Y   S   R++ EY +++ IND   
Sbjct: 248 TLAVSLHTPDDELRDTLVPVNNRWSVAEVLDAAAYYADRSGR-RVSIEYALIRDINDQGW 306

Query: 298 DALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            A  L K L    G  A +NLIP NP PG ++  S ++    F   +   G +  +R  +
Sbjct: 307 RADLLGKKLHKALGSKAHVNLIPLNPTPGSKWDASPREQQAEFVRRVIAQGVTCTVRDTK 366

Query: 355 GLDILAACGQLKSLSK 370
           G +I AACGQL + ++
Sbjct: 367 GQEIAAACGQLAAENR 382


>gi|224283162|ref|ZP_03646484.1| hypothetical protein BbifN4_04969 [Bifidobacterium bifidum NCIMB
           41171]
 gi|313140311|ref|ZP_07802504.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132821|gb|EFR50438.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 396

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 188/371 (50%), Gaps = 26/371 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+ M  +E       +G+P    + R  Q+    + R   + +  +D+    R  + +
Sbjct: 40  VHLVDMTPDERVAKAKDLGLP----KFRVKQLANHYFGRLETESEAFTDLPAATRGDIVE 95

Query: 67  HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F     + V  +++  GT  K L R           IE+V +   +R TLC+SSQVGC 
Sbjct: 96  AFFPPLIDEVTHQVADQGTTIKTLWRLFD-----GSHIESVLMRYPNRTTLCISSQVGCG 150

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RN++  EIL QV +A  ++ D           +     ++SNIV M
Sbjct: 151 MGCPFCATGKLGLTRNMSTGEILEQVRVAARMMRD---------GEVAGGPGRLSNIVFM 201

Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEP+ N+ +V  ++   S     G   S R IT+ST G VP I ++  E I V LA+S
Sbjct: 202 GMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIRKLAAEGIPVRLAVS 261

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA S+ LR+ LVP+N+++    ++DA   Y  LS+ RR++ EY +++GIND    A  L
Sbjct: 262 LHAPSDALRDELVPMNKRFNTTQVLDAAHDYF-LSSKRRVSIEYALMRGINDQAEHARLL 320

Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K L       A +N IP NP  G  +  S  +D   F + +  +G ++ +R  RG DI 
Sbjct: 321 AKRLNHYGDDWAHVNPIPLNPIEGSRWTASKPEDEQQFLDILHHAGITATLRDTRGSDID 380

Query: 360 AACGQLKSLSK 370
            ACGQL + +K
Sbjct: 381 GACGQLAAKTK 391


>gi|300780939|ref|ZP_07090793.1| cfr family radical SAM enzyme [Corynebacterium genitalium ATCC
           33030]
 gi|300532646|gb|EFK53707.1| cfr family radical SAM enzyme [Corynebacterium genitalium ATCC
           33030]
          Length = 377

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 117/376 (31%), Positives = 189/376 (50%), Gaps = 31/376 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +  +    +  EE  EAL ++G+P    + R  QI +  Y R   D   M+D+    R L
Sbjct: 20  MPPKHFADLSEEERIEALGELGLP----KFRADQIARHYYGRFEADPSTMTDLPAAQREL 75

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +           V +  + +G T K L R     +     +E+V +    R TLC+SSQ 
Sbjct: 76  VKDSLFPRLLTPVRKVETDNGDTTKTLWRLHDGIL-----LESVLMRYPGRATLCISSQA 130

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A +++               + G +++N+
Sbjct: 131 GCGMACPFCATGQGGLDRNLSTAEIVDQVREAAAMM--------------EAEGSRLTNV 176

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N++ V  ++         G   S+R +T+ST G  P I ++ +E + V L
Sbjct: 177 VFMGMGEPLANYNRVVSAVRQIVSPAPHGFGISQRNVTVSTVGLAPAIRKLADEGLSVTL 236

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ ++ ++DA R+Y   +   R++ EY +++ IND    A
Sbjct: 237 AVSLHTPDDELRDELVPMNNRFTVQDVLDAARYYADQTGR-RVSIEYALIRDINDHDFRA 295

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L + L    G    +NLIP NP PG ++  S ++    F   +   G +  +R  +G 
Sbjct: 296 DMLGQKLHDALGPLVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVTCTVRDTKGQ 355

Query: 357 DILAACGQLKSLSKRI 372
           +I AACGQL +  K+ 
Sbjct: 356 EIAAACGQLAADEKQA 371


>gi|312194967|ref|YP_004015028.1| radical SAM enzyme, Cfr family [Frankia sp. EuI1c]
 gi|311226303|gb|ADP79158.1| radical SAM enzyme, Cfr family [Frankia sp. EuI1c]
          Length = 397

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/369 (33%), Positives = 179/369 (48%), Gaps = 22/369 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLL 64
             L  + R+E     +++G P      R  Q+ +  + R     D  GM+D+   VR  L
Sbjct: 37  RHLADLSRDERRAVAVELGQPA----FRADQLARHYFTRLATPGDTAGMTDVPAAVRAPL 92

Query: 65  NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
                             DG TRK   R           IE+V +    R T+CVSSQ G
Sbjct: 93  ADALLPQLLTATTTLTCDDGATRKTAWRTVD-----GATIESVLMRYPDRATVCVSSQAG 147

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG   L RNLT  EI+ QV+ A  +                +   ++SN+V
Sbjct: 148 CGMGCPFCATGQGGLTRNLTVAEIVEQVVDAARV------LRRGGLPAGQATDTRLSNVV 201

Query: 184 MMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
            MGMGEPL N+  +  +L   SD    GL  S R +T+ST G VP I R+  E + V LA
Sbjct: 202 FMGMGEPLANYKALVTALRRISDPAPDGLGISARTLTVSTVGLVPAIGRLAGEGLPVRLA 261

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA  ++LR+ LVPIN ++ +  ++DA   Y   +   RI+ EY ++ G+ND P  A 
Sbjct: 262 VSLHAPDDELRDTLVPINTRWKVAEVLDAAWDYAARTGR-RISIEYALIDGVNDQPERAD 320

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L ++L+  P  +NLIP NP  G  +  S       F   ++  G ++ +R  RG +I A
Sbjct: 321 LLGRLLRDRPVHVNLIPLNPTRGSSWHASAPAGEREFVARLRARGITTTVRDTRGREIAA 380

Query: 361 ACGQLKSLS 369
           ACGQL + +
Sbjct: 381 ACGQLAADN 389


>gi|262038981|ref|ZP_06012317.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264]
 gi|261747005|gb|EEY34508.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264]
          Length = 357

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 200/371 (53%), Gaps = 26/371 (7%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           +   K  ++G   E+L+      G+     +   +Q++ W++ + + DF   ++IS+  R
Sbjct: 5   DTKDKIDILGFNLEKLQNIFADTGL----KKFNANQVYDWLHNKLVFDFDKFTNISKHDR 60

Query: 62  HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
            +L + F++        +IS D  T K+L     R +     IE+V I  K+R TLCVSS
Sbjct: 61  EILKKKFALPKLVHRSHQISEDRDTEKFLFELKDRRL-----IESVLISHKNRHTLCVSS 115

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q+GC + C FC T T K  RNL A EIL+Q    ++ L +                 K+ 
Sbjct: 116 QIGCLIGCDFCATATMKYERNLDASEILMQFYHIQNYLKE--------------KNEKLG 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239
           N+V MGMGEP  N+DNV +S++I +   G +FSKR  T+STSG VP I +  E E  + L
Sbjct: 162 NVVFMGMGEPFLNYDNVIESINILNSDKGQNFSKRNFTISTSGIVPVINKFTEDENQINL 221

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           AISLH+V +D+R+ L+PIN+ Y ++ L +A  +Y   +   RITFEY+++  +N   +DA
Sbjct: 222 AISLHSVKDDIRSELMPINKTYKVKELKEALINYQKKT-KNRITFEYILIDDLNCETKDA 280

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+  L      +NLIP+NP  G  Y    +K    F   +K    +  +R  +G DI 
Sbjct: 281 FELMNFLHSFSCLVNLIPYNPVAGKPYSTPSKKKQREFYTLLKDKNVNVTLRETKGQDIA 340

Query: 360 AACGQLKSLSK 370
           AACGQLK+  +
Sbjct: 341 AACGQLKAKKE 351


>gi|260436262|ref|ZP_05790232.1| radical SAM enzyme, Cfr family [Synechococcus sp. WH 8109]
 gi|260414136|gb|EEX07432.1| radical SAM enzyme, Cfr family [Synechococcus sp. WH 8109]
          Length = 352

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 178/368 (48%), Gaps = 37/368 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+G    EL++  +  G        R  Q+  WIY +G R    ++   +  R  L +
Sbjct: 3   QALLGRSAAELQDWAVAQG----QKPFRGRQLHDWIYAKGARSLADITVFPKTWRAALLE 58

Query: 67  H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +   + V   ++ D T K LL            IETV IP   R T+CVSSQVGC 
Sbjct: 59  GGIDVGRLKEVHRSVATDATTKLLLSTED-----GETIETVGIPTDQRLTVCVSSQVGCP 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L R+L   EI+ QVL  R  +                  R+ S+IV M
Sbjct: 114 MACRFCATGKGGLQRSLQTHEIVDQVLSVREAM-----------------DRRPSHIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVM 238
           GMGEPL N   V +++   +D   L   +RRIT+ST G    + ++ E            
Sbjct: 157 GMGEPLLNSSAVLEAIRCLNDD--LGIGQRRITVSTVGVPKTLPQLAELAMQRLGRAQFT 214

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA +  LR  L+P    YP + L++ CRHY  ++   R++FEY++L  +ND P  
Sbjct: 215 LAVSLHAPNQRLREELIPTAHAYPYDALLEDCRHYLDVTGR-RVSFEYILLGELNDQPEH 273

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L   + G  + +NLI +NP    E+     + I  F   ++R G +  +R  RGLD 
Sbjct: 274 AAELADRVGGFQSHVNLIAYNPIEEEEFKRPTPQRIEVFRRVLERRGVAVSLRASRGLDQ 333

Query: 359 LAACGQLK 366
            AACGQL+
Sbjct: 334 NAACGQLR 341


>gi|302558123|ref|ZP_07310465.1| cfr family radical SAM enzyme [Streptomyces griseoflavus Tu4000]
 gi|302475741|gb|EFL38834.1| cfr family radical SAM enzyme [Streptomyces griseoflavus Tu4000]
          Length = 368

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 183/369 (49%), Gaps = 25/369 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +EA++  G        R  Q+ +  + R   D +  +DI    R  L +
Sbjct: 20  RHLADLTPAERKEAVVAAG----EKPFRAKQLSQHYFARYAHDPELWTDIPAGSRGKLQE 75

Query: 67  HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                   +V   +S D   TRK L +     +     +E+V +    R T+C+SSQ GC
Sbjct: 76  ALLPELMTVV-RHLSTDQGTTRKTLWKLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ Q++          G   +    +P    ++SNIV 
Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N++ V  ++   +D    GL  S+R IT+ST G VP + R  +E     LAI
Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAVHRFSDEGFKCRLAI 240

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +  ++DA   Y   S   R++ EY +++ IND       
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFEYAARSGR-RLSIEYALIRDINDQAWRGDR 299

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++LKG P  +NLIP NP PG ++  S  +D   F E I   G    IR  RG +I  A
Sbjct: 300 LGRMLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGA 359

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 360 CGQLAASER 368


>gi|213964408|ref|ZP_03392608.1| radical SAM enzyme, Cfr family [Corynebacterium amycolatum SK46]
 gi|213952601|gb|EEB63983.1| radical SAM enzyme, Cfr family [Corynebacterium amycolatum SK46]
          Length = 369

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 183/373 (49%), Gaps = 31/373 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +       +  EE + A+ ++G+P      R  QI +  Y R   D   M+D+ +  R  
Sbjct: 20  MPATHFADLDVEERKAAVKELGLPA----FRADQIARHYYGRLEADPMTMTDLPEADRQK 75

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +           V      DG TRK L R      G    +E+V +    R TLC+SSQ 
Sbjct: 76  VKDSLFPPLLTPVRHITCDDGETRKTLWR-----AGDGTLLESVLMKYPGRATLCISSQA 130

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A                 + + G +++NI
Sbjct: 131 GCGMACPFCATGQGGLQRNLSTAEIVDQVREAA--------------ATMAAEGGRLTNI 176

Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N++ V  ++   +     G   S R +T+ST GF PNI R+ +E + V L
Sbjct: 177 VFMGMGEPLANYNRVLAAIHRITRPSPEGFGISMRNVTVSTVGFAPNIRRLADEDLSVTL 236

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVPIN ++ +  ++DA R+Y   +   R++ EY +++ IND    A
Sbjct: 237 AVSLHTPDDELRDELVPINNRFTVAEVLDAARYYADKTGR-RVSIEYALIRDINDQDWRA 295

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L    G    +NLIP NP PG ++  S +K    F   ++  G    +R  RG 
Sbjct: 296 DLLGKKLHNALGSRVHVNLIPLNPTPGSKWDASPKKQQEEFVRRVQAQGVPCTVRDTRGN 355

Query: 357 DILAACGQLKSLS 369
           +I AACGQL +  
Sbjct: 356 EIAAACGQLAAEE 368


>gi|283456084|ref|YP_003360648.1| radical SAM family enzyme [Bifidobacterium dentium Bd1]
 gi|283102718|gb|ADB09824.1| Radical SAM family enzyme [Bifidobacterium dentium Bd1]
          Length = 389

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 190/375 (50%), Gaps = 28/375 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L    M  +E      ++G+P    R R  Q+    Y     D +  SD     R  
Sbjct: 34  KPPLHFADMSEDERIAKAKELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAE 89

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
             + F       V  +++ +GT  K L R     +     IE+V +   +R TLC+SSQV
Sbjct: 90  AAEAFFPTLITEVTRQVADEGTTIKTLWRLFDGSL-----IESVLMRYPTRTTLCISSQV 144

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++A EI+ QV +A   + D           +     ++SNI
Sbjct: 145 GCGMGCPFCATGKLGLTRNMSAGEIVEQVRVAAKAMRD---------GEVAGGPGRLSNI 195

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+ +V  ++   S     G   S R IT+ST G VP I ++  E I V L
Sbjct: 196 VFMGMGEPMGNYRSVLSAVRQISAMPPEGFVISARNITVSTVGVVPGIKKLTAEGIPVRL 255

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++    ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 256 AVSLHAPSDELRDELVPMNKRFDTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 314

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G ++  S  +D   F + + ++G ++ +R  RG 
Sbjct: 315 RLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQ 374

Query: 357 DILAACGQLKSLSKR 371
           DI  ACGQL +  ++
Sbjct: 375 DIDGACGQLAAKERQ 389


>gi|116073729|ref|ZP_01470991.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916]
 gi|116069034|gb|EAU74786.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916]
          Length = 346

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 184/372 (49%), Gaps = 37/372 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+G    +LE+  +  G        R  Q+  W+Y +G RD  G++ + +  R  L +
Sbjct: 3   IALLGRSAADLEQWAVAQG----QSSFRGRQLHDWLYAKGARDLNGITVLPKVWRAALQE 58

Query: 67  H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +   +     ++ D T K LL            IETV IP   R T+CVSSQVGC 
Sbjct: 59  QGVVVGRLQEQLRSVASDATTKLLLGTED-----AETIETVGIPTDQRLTVCVSSQVGCP 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L R+L   EI+ QVL  R ++                  R+ S++V M
Sbjct: 114 MACRFCATGKGGLQRSLATHEIVDQVLSIREVM-----------------DRRPSHVVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVM 238
           GMGEPL N D V +++   +D   L   +RRIT+ST G    + ++ E            
Sbjct: 157 GMGEPLLNIDAVLEAIRCFNDD--LGIGQRRITVSTVGVPRTLPKLAELAMERLGRAQFT 214

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA +  LR  L+P    YP E L+D CRHY  ++   R++FEY++L G+ND P  
Sbjct: 215 LAVSLHAPNQQLREELIPTAHAYPFEALLDDCRHYLAITGR-RVSFEYILLGGLNDHPAH 273

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L   + G  + +NLI +NP    E+     + I  F   ++R G +  +R  RGLD 
Sbjct: 274 AEELADRVGGFQSHVNLIAYNPIEEEEFQRPSAERIAGFRRVLERRGVAVSLRASRGLDQ 333

Query: 359 LAACGQLKSLSK 370
            AACGQL+  +K
Sbjct: 334 NAACGQLRRQNK 345


>gi|17227851|ref|NP_484399.1| hypothetical protein all0355 [Nostoc sp. PCC 7120]
 gi|17129700|dbj|BAB72313.1| all0355 [Nostoc sp. PCC 7120]
          Length = 322

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 121/345 (35%), Positives = 175/345 (50%), Gaps = 27/345 (7%)

Query: 28  QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRK 87
           Q     R  Q+  WIY +G+R    +S  S++ R  +     I    I    ++ DGT K
Sbjct: 4   QGQPAYRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVAD-VPIGRSTIHHRSVASDGTVK 62

Query: 88  WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
           +LL+     I     +E V IP   R T+CVS+QVGC + C FC TG     RNL   EI
Sbjct: 63  YLLQLSDGEI-----VEAVGIPTDKRLTVCVSTQVGCPMACDFCATGKGGYKRNLERHEI 117

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
           + QVL  +                     +++S++V MGMGEPL N +NV   L   +  
Sbjct: 118 VDQVLTVQE-----------------DFQQRVSHVVFMGMGEPLLNTENVLAGLRSLNQD 160

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
           +G    +R +TLST G    I+ + E  + V LA+SLHA +  LR  L+P  R Y +E L
Sbjct: 161 VG--IGQRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIEDL 218

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           +  CR Y  ++   RI+FEY++L G+ND P  AL L K L+G    +NLIP+N     +Y
Sbjct: 219 LAECREYVAITGR-RISFEYILLAGVNDLPEHALELSKHLRGFQNHVNLIPYNSIDEVDY 277

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
                  I  F   +++   +  +R  RGL+  AACGQL++ + R
Sbjct: 278 KRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRTKASR 322


>gi|284039833|ref|YP_003389763.1| radical SAM enzyme, Cfr family [Spirosoma linguale DSM 74]
 gi|283819126|gb|ADB40964.1| radical SAM enzyme, Cfr family [Spirosoma linguale DSM 74]
          Length = 349

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 187/365 (51%), Gaps = 19/365 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ +  +   +L++   K G        R  Q+ +W++ +    F+ M+++S   R LLN
Sbjct: 2   KQDIRKLTAVQLKDWFTKNG----EQGFRAKQVHEWLWKKSALSFEQMTNLSLSTRELLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F I    +  ++ S DGT K   +     +   V I  +   +  R T CVSSQVGCS
Sbjct: 58  ANFEIRPLTVDQQQRSNDGTIKSSFKLFDGNLVEGVLIPALRNDDLDRMTACVSSQVGCS 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTC FC TG     RNL A EI  QV+       +             +    ++NIV M
Sbjct: 118 LTCKFCATGYMDRKRNLDAAEIYDQVVAIDRQAKE-------------NYDAPLTNIVYM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
           GMGEPL N+ NV +S+   +   GL  S +RIT+ST+G    I ++G +++   LA+SLH
Sbjct: 165 GMGEPLLNYKNVLESVDRITSPDGLGMSPKRITVSTAGIAKMIRQLGDDDVKFNLALSLH 224

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++  R+ ++PIN    LE L DA   Y       RITFEY++    ND+ +DA  L K
Sbjct: 225 AANDQKRDQIMPINESNTLEALGDAL-TYFYKKTGTRITFEYILFYNFNDTLQDAQELWK 283

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             K +PAK+N+I +NP     +  +D + +  F+  ++  G    +R  RG DI AACGQ
Sbjct: 284 FTKRVPAKVNIIEYNPIAEANFKNTDPQTLDKFAGFLESKGVIVNVRRSRGKDIDAACGQ 343

Query: 365 LKSLS 369
           L   +
Sbjct: 344 LAGKT 348


>gi|251770958|gb|EES51543.1| radical SAM family protein [Leptospirillum ferrodiazotrophum]
          Length = 357

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 144/365 (39%), Positives = 193/365 (52%), Gaps = 23/365 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ- 66
           +L+        E L K G P      R  Q+  W+Y R   D + MS+I   VR LL+  
Sbjct: 2   NLLDHPPSTWGEILEKRGHPA----YRGRQVAHWVYQRLTTDPRKMSNIPPGVRDLLSSG 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             S+  P ++    S DGT K  LR     +     IE+V IP K + TLC+S+Q GC +
Sbjct: 58  TLSLDLPTVLSTAQSLDGTVKMALRLQDGPV-----IESVLIPRKGQWTLCLSTQAGCGI 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC T +  L RNL+  EIL Q LLA   +   P  E             I +IV MG
Sbjct: 113 GCRFCRTASMGLTRNLSTAEILSQWLLAARFVETLPPGES-----------HIDHIVFMG 161

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
           MGEPL N + +  ++   +   G   S RRIT+STSG VP I  +GE   GV LAISL A
Sbjct: 162 MGEPLANLEALIPAIRSLTHPDGAGLSPRRITVSTSGLVPRIDTLGEANTGVRLAISLCA 221

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             + LR  ++P+ R Y +E ++ ACR +P L N  RITFEYV+L G+NDSP  A  L ++
Sbjct: 222 PDDALRREIMPVGRIYSIEEILAACRRFP-LRNRDRITFEYVLLAGVNDSPLQARQLGRL 280

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L    +K+NLIPFNP+PG  Y       +  F E +     ++ +R   G D+LAACGQL
Sbjct: 281 LAPFRSKVNLIPFNPFPGSPYHRPTDSSVAAFQEVLAGFHITATVRKSMGPDVLAACGQL 340

Query: 366 KSLSK 370
              S+
Sbjct: 341 ARESQ 345


>gi|283782458|ref|YP_003373213.1| radical SAM enzyme, Cfr family [Pirellula staleyi DSM 6068]
 gi|283440911|gb|ADB19353.1| radical SAM enzyme, Cfr family [Pirellula staleyi DSM 6068]
          Length = 391

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/370 (36%), Positives = 200/370 (54%), Gaps = 36/370 (9%)

Query: 8   SLIGMMR----------EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDIS 57
            L+G  R           EL+  L + G P      R +Q+ KW++  G   F  M+D+ 
Sbjct: 27  DLLGKTRMKHLAEPSVWNELKTWLTERGYPA----YRATQVRKWVFELGASSFDEMTDLP 82

Query: 58  QEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
           +++R  L   F++   ++V +  S DGT K L+ +P     G   IE V + +  R ++C
Sbjct: 83  KKLRDELAPEFTLWTGKVVTKSESPDGTEKLLVEYP-----GGGRIECVLLRDGDRRSIC 137

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC++ C FC +G   + RNLTA EI+ Q+LL + LL +                 
Sbjct: 138 VSSQVGCAMGCVFCASGLDGVDRNLTAGEIVEQMLLLQRLLPE---------------KE 182

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIG 236
           ++S+IVMMGMGEPL N D+V ++L  A+   GL  S RRIT+ST G    + ++   E  
Sbjct: 183 RLSHIVMMGMGEPLANIDHVLEALGEATREDGLGISPRRITISTVGLPAALDKLCNLEAK 242

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LA+SLHA +N+LR  LVPIN+   +E +I++   Y   S   R+TFEYV+L G+ND P
Sbjct: 243 YHLAVSLHAPNNELRTRLVPINKAIGIEKVIESADRYFETSGR-RLTFEYVLLAGVNDHP 301

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L ++L G  A +N+IP+NP  G  Y       I  F   +  +G +   R  +G 
Sbjct: 302 DHAQELAELLAGRTAMLNVIPYNPVAGLPYKTPSGNAIHRFRNILVDAGINVKFRQRKGS 361

Query: 357 DILAACGQLK 366
           +I AACGQL+
Sbjct: 362 EINAACGQLR 371


>gi|229495911|ref|ZP_04389637.1| radical SAM enzyme, Cfr family [Porphyromonas endodontalis ATCC
           35406]
 gi|229317224|gb|EEN83131.1| radical SAM enzyme, Cfr family [Porphyromonas endodontalis ATCC
           35406]
          Length = 339

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 130/364 (35%), Positives = 192/364 (52%), Gaps = 28/364 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+GM+ EEL    L IG+P    +    Q+  WIY + +  F  M++IS   R LL +
Sbjct: 2   ITLLGMLPEELTGLALSIGMP----KFAGRQLADWIYNKRVTSFDEMTNISLRHRALLQE 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             +I     V    S DGTRK+L         G   +E+V+IPE  R TLCVSSQ+GC +
Sbjct: 58  KATIGRKAPVARADSKDGTRKFLFAVGD----GAQYVESVFIPEGDRATLCVSSQIGCKM 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q    NLT+ EI+ Q+L                         K++NIV MG
Sbjct: 114 DCLFCMTGKQGFKGNLTSAEIVNQILSIPDSD-------------------KLTNIVYMG 154

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N + V KS++  +   GL+ S +RITLS+ G  P +++  E+    LAISLH  
Sbjct: 155 MGEPLDNVEAVLKSIACFTHPSGLAMSPKRITLSSIGLEPGLSKFLEQCSCHLAISLHNA 214

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
             + R  ++PI R  P+E  I+  + Y   S  RR+TFEY++  G+ND    A  L++++
Sbjct: 215 LPEERLSMMPIERAMPIEKTIETLKRY-NFSGQRRLTFEYIVFGGLNDDIAHAKALLRLI 273

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +   INLI ++  P      S ++ +  F++ +  +G  + IR  RG DI AACG L 
Sbjct: 274 RPLECHINLIRYHRIPNVALPSSQEERMQRFADYLNGAGVPTTIRASRGEDIAAACGMLS 333

Query: 367 SLSK 370
           +  +
Sbjct: 334 AQHQ 337


>gi|300783906|ref|YP_003764197.1| ribosomal RNA large subunit methyltransferase N [Amycolatopsis
           mediterranei U32]
 gi|299793420|gb|ADJ43795.1| ribosomal RNA large subunit methyltransferase N [Amycolatopsis
           mediterranei U32]
          Length = 368

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 121/372 (32%), Positives = 183/372 (49%), Gaps = 26/372 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L    L  +   E   A+ ++G        R  Q+    + R   D + M+DI    R  
Sbjct: 15  LPPRHLADLSVSERAAAVAELG----EKPFRAKQLSNHYFSRLTVDPEEMTDIPAASRQR 70

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L           V    + DG TRK L R     +     +E+V +    R TLC+SSQ 
Sbjct: 71  LVADLMPTLLTEVRALAADDGATRKTLWRAHDGTL-----LESVLMRYPDRATLCISSQA 125

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A +++ D           +P    ++SNI
Sbjct: 126 GCGMACPFCATGQGGLDRNLSTAEIVDQVRSAAAVMRD---------GAMPGGPGRLSNI 176

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V  ++   +D    GL   +R +T+ST G  P I ++ +E + V L
Sbjct: 177 VFMGMGEPLANYKRVVAAVRRITDPAPGGLGIGQRSVTVSTVGLAPAIRKLADEKMQVRL 236

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ ++ ++ A R+Y   S   R++ EY +++ IND P  A
Sbjct: 237 AVSLHTPDDELRDTLVPVNERWSVDEVLSAARYYADTSGR-RVSIEYALIRDINDQPWRA 295

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L+   G    +N+IP NP PG ++  S +     F   +   G +  +R  RG 
Sbjct: 296 ELLAKRLRKHLGQLVHVNVIPLNPTPGSKWDASPKPVEREFVRLVNAGGVACTVRDTRGQ 355

Query: 357 DILAACGQLKSL 368
           +I AACGQL + 
Sbjct: 356 EIAAACGQLAAE 367


>gi|237750344|ref|ZP_04580824.1| ribosomal RNA large subunit methyltransferase N [Helicobacter bilis
           ATCC 43879]
 gi|229373874|gb|EEO24265.1| ribosomal RNA large subunit methyltransferase N [Helicobacter bilis
           ATCC 43879]
          Length = 366

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 32/374 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++     +ELE  +          + R  QI+ W+Y   + + + M +I + ++ +L Q 
Sbjct: 16  NIYSYHLDELESLIT--------PKFRAKQIYNWLYKHYVSNIESMKNIPKNLQEILKQT 67

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI--------ETVYIPEKSRGTLCVS 119
           FS    + +  + S DGT+K+L +         V I        E   + +  + T CVS
Sbjct: 68  FSFPNLKPIRIEESGDGTKKYLFQTSDGATFESVFIKMREKEYDENNRVKKSEKYTFCVS 127

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC + C+FC T     VRNL+A EI+ QV+  +                      K 
Sbjct: 128 SQVGCRVGCAFCSTAKGGFVRNLSAGEIVEQVVALKRDNN--------------LSAHKS 173

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
            NIV MGMGEPL N +NV K++ I S   GL  + RR T+STSG  P I ++G   +GV 
Sbjct: 174 INIVFMGMGEPLDNLNNVAKAIKILSHEEGLCIATRRQTISTSGIAPQIEKLGAMNLGVQ 233

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           +A+SLHAV + LR+ L+P+N+ Y +E ++ A +++P L   +RI FEY+++K IND    
Sbjct: 234 IALSLHAVDDSLRSRLIPMNKVYNIERVLQALKNFP-LDTRKRILFEYLVIKDINDDLAS 292

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L+K+L G  AK+NLIPFNP    E+       +  F++ + + G  + IR  +G+DI
Sbjct: 293 AKKLVKLLHGFRAKVNLIPFNPHAESEFQRPCIDKMQGFADYLYKRGIVATIRESKGIDI 352

Query: 359 LAACGQLKSLSKRI 372
            AACGQL++   + 
Sbjct: 353 SAACGQLRAKQMKA 366


>gi|160887188|ref|ZP_02068191.1| hypothetical protein BACOVA_05204 [Bacteroides ovatus ATCC 8483]
 gi|156107599|gb|EDO09344.1| hypothetical protein BACOVA_05204 [Bacteroides ovatus ATCC 8483]
          Length = 344

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 198/367 (53%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++G+P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     VDE  S DGT K+L +     +G    +E+VYIP+  R TLCVSSQVG
Sbjct: 57  LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                          K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI-------------------HSLPERDKLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L + + + G ++S +RITLST G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R  L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +D   +  F + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDNLTSHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKSLSK 370
            L +  +
Sbjct: 332 MLSTAKQ 338


>gi|193215236|ref|YP_001996435.1| radical SAM enzyme, Cfr family [Chloroherpeton thalassium ATCC
           35110]
 gi|254807164|sp|B3QS43|RLMN_CHLT3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|193088713|gb|ACF13988.1| radical SAM enzyme, Cfr family [Chloroherpeton thalassium ATCC
           35110]
          Length = 369

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 143/374 (38%), Positives = 192/374 (51%), Gaps = 32/374 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN + K  +  +  E L   +   G P      R  QI+ WIY  G+ DF  M ++S   
Sbjct: 1   MNEV-KHDIKALSLEALMALINSYGQPA----FRAKQIFHWIYAHGVTDFAQMKNLSASF 55

Query: 61  RHLLNQHFSIIYPEIVDEKIS----CDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RG 114
           + LL+QHF++   +   + +S     + T K+L R           IE+V+IP  S  R 
Sbjct: 56  QTLLSQHFTVSSIQPHADTVSHEITPEQTVKFLFRLSDE-----QSIESVFIPSDSTSRN 110

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           TLC+SSQVGC+  C FC TG    +RNLT  EIL QVL     LGD              
Sbjct: 111 TLCISSQVGCAFACKFCATGYMGFIRNLTIGEILDQVLWVNRWLGD-------------Q 157

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGE 233
            G KI+N+V MGMGEPL NFDN   ++ I ++       S R+IT+ST GF+P I R+ +
Sbjct: 158 RGGKITNVVFMGMGEPLANFDNCLAAIRILTNPDYAFQISTRKITVSTVGFIPGIQRLID 217

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             I   LAISLH+    +R  L+PI ++Y L  L      Y   +  + ITFEY ++  I
Sbjct: 218 TGINCKLAISLHSAHQAIREELIPIAKEYSLATLKAILTRY-NQAYKQPITFEYSLIHKI 276

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           NDS +DA+ L K  KGI  KINLI +N     +YL S +     F       G +  +R 
Sbjct: 277 NDSEQDAILLSKFCKGINCKINLIDYNSVDNIDYLPSPEGHKQAFIRKCIEHGLTVTVRK 336

Query: 353 PRGLDILAACGQLK 366
            RG DI AACGQL 
Sbjct: 337 SRGADIQAACGQLA 350


>gi|310819181|ref|YP_003951539.1| ribosomal RNA large subunit methyltransferase n [Stigmatella
           aurantiaca DW4/3-1]
 gi|309392253|gb|ADO69712.1| Ribosomal RNA large subunit methyltransferase N [Stigmatella
           aurantiaca DW4/3-1]
          Length = 360

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 190/373 (50%), Gaps = 29/373 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI--SQEVRHLL 64
            SL  + R  L + L + G            +W+ +Y R ++    +  +    E+   L
Sbjct: 10  VSLHDLSRAALGQRLAEWGYSA----FHRDALWEALYRRHVKSLDELEGLVRP-ELVTRL 64

Query: 65  NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +H  +  P +  E  S DG T K LLR           IETV +  K R T+CVS+Q G
Sbjct: 65  REHTCLRSPTVHHETFSSDGHTHKLLLRQHD-----GQTIETVLMRFKGRATVCVSTQAG 119

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TG   L R+L+  EI+ QVL                  ++   G  + NIV
Sbjct: 120 CAMGCVFCATGQMGLARHLSPGEIVAQVLHV--------------VGLLRQTGETLRNIV 165

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
           +MGMGEPL N+D   +++ I  D  GL+   R ITLST G VP I R+ +E   V LA+S
Sbjct: 166 LMGMGEPLHNYDATLEAVDILVDPRGLAIGPRFITLSTVGVVPGIRRLADEDRPVQLAVS 225

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH  ++  R  LVP+ +++PL  L+DACR+Y       RI FE+ ++ G ND+   A  L
Sbjct: 226 LHGATDAERAALVPVGKRWPLNELMDACRYYSEKRGR-RIFFEWTLIAGQNDTVDQAHTL 284

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LKG+ A +N+IP NP  G     S  + +  F + +   G  S +R  RG+DI A C
Sbjct: 285 GQLLKGMEAHVNVIPLNPTVGFGGTPSTPEAVRAFQQVLTSYGLPSTVRQRRGIDIDAGC 344

Query: 363 GQLKSLSKRIPKV 375
           GQLK+  +R  + 
Sbjct: 345 GQLKAAVERPRRS 357


>gi|87308293|ref|ZP_01090434.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM
           3645]
 gi|87288850|gb|EAQ80743.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM
           3645]
          Length = 351

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 197/374 (52%), Gaps = 32/374 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           +    L+  +++ G+P    + R  QI  WI     + F+ M+++ + +R  L +   + 
Sbjct: 9   LDLTSLQALVVQWGLP----KFRAQQIRSWIVENRAQSFEDMANLPKPLRSQLAEKAQLW 64

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
             EI     + DGT K LL+           IE V + +  R T+C+S+QVGC++ C FC
Sbjct: 65  STEIARHTTAADGTEKLLLQLHD-----GGRIECVLLRDGDRRTICISTQVGCAMGCVFC 119

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            +G   + RNLT  EI+ Q+L  + LL                VG ++S+IV+MGMGEPL
Sbjct: 120 ASGLDGVERNLTVGEIIEQMLRLQRLL---------------PVGERLSHIVVMGMGEPL 164

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDL 250
            N D +  +L  AS   GL  S RRIT+ST G  P I ++ + +    LA+SLHA  + L
Sbjct: 165 ANVDRLLSALDFASSEEGLGISHRRITISTVGLPPAIRKLADRDSRYHLAVSLHAPDDQL 224

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           RN +VP N+   +  +++A  HY  +S   R+TFEYV+L  +ND P  A  L K+L+G P
Sbjct: 225 RNQIVPTNKNIGIHAILEAADHYFEISGR-RLTFEYVLLAELNDQPEHAHRLAKLLRGRP 283

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           A +N+IP+NP  G  Y    ++    F   ++ +G +   R  +G  I AACGQL+    
Sbjct: 284 ALLNIIPYNPVAGLPYRTPSKEAQHAFRAILEGAGLTVKFRQKKGDKINAACGQLR---- 339

Query: 371 RIPKVPRQEMQITG 384
                P   +QI+G
Sbjct: 340 --RNTPENLVQISG 351


>gi|315635461|ref|ZP_07890727.1| cfr family radical SAM enzyme [Arcobacter butzleri JV22]
 gi|315480219|gb|EFU70886.1| cfr family radical SAM enzyme [Arcobacter butzleri JV22]
          Length = 360

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/372 (35%), Positives = 201/372 (54%), Gaps = 32/372 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+     +EL+E L            R  Q++ W+Y +    +  M ++ +E+   L +
Sbjct: 7   PSIYDYTLDELKEILK--------PSFRAKQVYNWLYKKYASSYDEMKNLPKELVEDLKE 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI--------ETVYIPEKSRGTLCV 118
           ++ I   +IV ++ S DG+ K+L +         V +        E   I    + T+C+
Sbjct: 59  NYPIDIMQIVKKEQSRDGSIKYLFKLRDNHTVEAVLLLMKDKKIDEDGQIVRSEKYTVCI 118

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC + CSFC T     VRNLT  E + Q++  +                      K
Sbjct: 119 SSQVGCKVGCSFCLTAKGGFVRNLTVGEYIAQIVNIKRDNDI--------------AENK 164

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGV 237
             NIV MGMGEPL NFDN  K++ I S+  GL+ S+RR T+STSG    I ++GE ++ +
Sbjct: 165 ALNIVYMGMGEPLDNFDNFTKAVEIFSELDGLAISRRRQTVSTSGIATKIKKLGEKDLQI 224

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LAISLHAV ++LR+ L+P+N+ Y +  +I+A + +P +   +++ FEY+++K  NDS  
Sbjct: 225 QLAISLHAVDDELRSELIPMNKAYNIASIIEAVKAFP-VDTRKKVMFEYLVIKDKNDSIE 283

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L+ +L GI AK+NLI FNP+PG  Y    +KD++ F + + + G    IR  +GLD
Sbjct: 284 AAKKLVSLLNGIQAKVNLIYFNPYPGTSYQRPQEKDMLKFKDFLNQKGVICTIRESKGLD 343

Query: 358 ILAACGQLKSLS 369
           I AACGQLK   
Sbjct: 344 ISAACGQLKEKE 355


>gi|115379954|ref|ZP_01467009.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
 gi|115363034|gb|EAU62214.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
          Length = 384

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 190/373 (50%), Gaps = 29/373 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI--SQEVRHLL 64
            SL  + R  L + L + G            +W+ +Y R ++    +  +    E+   L
Sbjct: 34  VSLHDLSRAALGQRLAEWGYSA----FHRDALWEALYRRHVKSLDELEGLVRP-ELVTRL 88

Query: 65  NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +H  +  P +  E  S DG T K LLR           IETV +  K R T+CVS+Q G
Sbjct: 89  REHTCLRSPTVHHETFSSDGHTHKLLLRQHD-----GQTIETVLMRFKGRATVCVSTQAG 143

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TG   L R+L+  EI+ QVL                  ++   G  + NIV
Sbjct: 144 CAMGCVFCATGQMGLARHLSPGEIVAQVLHV--------------VGLLRQTGETLRNIV 189

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242
           +MGMGEPL N+D   +++ I  D  GL+   R ITLST G VP I R+ +E   V LA+S
Sbjct: 190 LMGMGEPLHNYDATLEAVDILVDPRGLAIGPRFITLSTVGVVPGIRRLADEDRPVQLAVS 249

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH  ++  R  LVP+ +++PL  L+DACR+Y       RI FE+ ++ G ND+   A  L
Sbjct: 250 LHGATDAERAALVPVGKRWPLNELMDACRYYSEKRGR-RIFFEWTLIAGQNDTVDQAHTL 308

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LKG+ A +N+IP NP  G     S  + +  F + +   G  S +R  RG+DI A C
Sbjct: 309 GQLLKGMEAHVNVIPLNPTVGFGGTPSTPEAVRAFQQVLTSYGLPSTVRQRRGIDIDAGC 368

Query: 363 GQLKSLSKRIPKV 375
           GQLK+  +R  + 
Sbjct: 369 GQLKAAVERPRRS 381


>gi|29349780|ref|NP_813283.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253569856|ref|ZP_04847265.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           1_1_6]
 gi|81442826|sp|Q89ZK5|RLMN_BACTN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|29341691|gb|AAO79477.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840237|gb|EES68319.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           1_1_6]
          Length = 345

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/368 (34%), Positives = 196/368 (53%), Gaps = 29/368 (7%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            + K  L+GM   EL+  + ++G+P         QI  W+Y + +     M+++S + R 
Sbjct: 1   MMSKYPLLGMTLIELQSLVKRLGMPG----FAAKQIASWLYDKKVTSIDEMTNLSLKYRE 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LL Q++ +     V+E  S DGT K+L       +G    +E+VYIP+  R TLC+SSQV
Sbjct: 57  LLKQNYEVGAEAPVEEMRSVDGTVKYLY-----PVGENHFVESVYIPDDERATLCISSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG Q    NLTA +I+ Q+                          K++N+
Sbjct: 112 GCKMNCKFCMTGKQGYSANLTAHQIINQI-------------------HSLPERDKLTNV 152

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VMMGMGEPL N + V K+L I + S G ++S +RIT+ST G    + R  EE    LAIS
Sbjct: 153 VMMGMGEPLDNLEEVLKALDILTGSYGYAWSPKRITVSTVGLRKGLRRFIEESDCHLAIS 212

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+     R  L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L
Sbjct: 213 LHSPVTAQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKEL 271

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K+L+G+  ++NLI F+  PG     +D   +  F + +   G  + IR  RG DI AAC
Sbjct: 272 LKLLRGLDCRMNLIRFHSIPGVALEGADMDTMTRFRDYLTTHGLFTTIRASRGEDIFAAC 331

Query: 363 GQLKSLSK 370
           G L +  +
Sbjct: 332 GMLSTAKQ 339


>gi|310287528|ref|YP_003938786.1| radical SAM enzyme, Cfr family [Bifidobacterium bifidum S17]
 gi|311064441|ref|YP_003971166.1| radical SAM family protein [Bifidobacterium bifidum PRL2010]
 gi|309251464|gb|ADO53212.1| radical SAM enzyme, Cfr family [Bifidobacterium bifidum S17]
 gi|310866760|gb|ADP36129.1| Radical SAM family enzyme [Bifidobacterium bifidum PRL2010]
          Length = 396

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 188/371 (50%), Gaps = 26/371 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+ M  +E       +G+P    + R  Q+    + R   + +  +D+    R  + +
Sbjct: 40  VHLVDMTPDERIARAKDLGLP----KFRVKQLANHYFGRLETESEAFTDLPAATRGDIVE 95

Query: 67  HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F     + V  +++  GT  K L R           IE+V +   +R TLC+SSQVGC 
Sbjct: 96  AFFPPLIDEVTHQVADQGTTIKTLWRLFD-----GSHIESVLMRYPNRTTLCISSQVGCG 150

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RN++  EIL QV +A  ++ D           +     ++SNIV M
Sbjct: 151 MGCPFCATGKLGLTRNMSTGEILEQVRVAARMMRD---------GEVAGGPGRLSNIVFM 201

Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242
           GMGEP+ N+ +V  ++   S     G   S R IT+ST G VP I ++  E I V LA+S
Sbjct: 202 GMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIRKLTAEGIPVRLAVS 261

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA S+ LR+ LVP+N+++    ++DA   Y  LS+ RR++ EY +++GIND    A  L
Sbjct: 262 LHAPSDALRDELVPMNKRFNTTQVLDAAHDYF-LSSKRRVSIEYALMRGINDQAEHARLL 320

Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K L       A +N IP NP  G  +  S  +D   F + +  +G ++ +R  RG DI 
Sbjct: 321 AKRLNHYGDDWAHVNPIPLNPIEGSRWTASKPEDEQQFLDILHHAGITATLRDTRGSDID 380

Query: 360 AACGQLKSLSK 370
            ACGQL + +K
Sbjct: 381 GACGQLAAKTK 391


>gi|262276957|ref|ZP_06054750.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114]
 gi|262224060|gb|EEY74519.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114]
          Length = 357

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/366 (41%), Positives = 228/366 (62%), Gaps = 19/366 (5%)

Query: 11  GMMREELEEALLKI-GIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
            +   E++        + ++   MR +Q+WK+ Y +G  D    S+++Q +R  L +  +
Sbjct: 6   DLNYREVKSIFSNNFNLDKKKSSMRANQVWKFYYQKGYSDPNLFSNLTQSLRDELLKIVN 65

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
              P+I ++++S DGT KWLL    + +     +ETVYIP ++  TLC+SSQVGC+L C 
Sbjct: 66  FSRPKIKNKQVSKDGTIKWLLELNDKNL-----VETVYIPSETHSTLCISSQVGCTLNCK 120

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC+TG Q LV+NL++ EI+ Q+L+A+  L D+               +KI+NIV MGMGE
Sbjct: 121 FCHTGIQPLVKNLSSNEIISQILIAKDELNDW------------KEQKKINNIVYMGMGE 168

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249
           P  NF+N+KKS+ I  D  GL+FS ++IT+STSG  PNI +   EIG  LA+SLHA +N+
Sbjct: 169 PFYNFENIKKSVEILKDENGLNFSNKKITVSTSGISPNIKKAANEIGTYLALSLHAPNNE 228

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           +RN ++PIN+KY +E +I+ C  Y    N  +I  EYV+LK +ND+ + A  L KI+   
Sbjct: 229 IRNEIMPINKKYNIENIIEHCSQY-AKENGEKIFIEYVLLKDVNDTEQCAKELSKIMSQF 287

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           P K+NLI FNPWPG +Y  + ++    F E IK++G+   +R  RG DIL ACGQLK+ S
Sbjct: 288 PCKLNLIQFNPWPGVKYKTATKEQTSKFIEIIKKNGHVVTLRKSRGDDILGACGQLKTAS 347

Query: 370 KRIPKV 375
           +R  + 
Sbjct: 348 EREKRS 353


>gi|187734933|ref|YP_001877045.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC
           BAA-835]
 gi|205829710|sp|B2UNF2|RLMN_AKKM8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|187424985|gb|ACD04264.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 359

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/370 (34%), Positives = 206/370 (55%), Gaps = 36/370 (9%)

Query: 13  MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72
             E+L   L + G    H + RT Q+  W++ + +  F  MS++   +++LL ++F    
Sbjct: 11  TEEKLLAFLTEHG----HTKFRTQQVLDWVWRKRVTTFDAMSNLPPALKNLLAENFRFHT 66

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--------EKSRGTLCVSSQVGC 124
           PEIV+   S D TRK+L +     +     +E+V IP        +  R TLCVSSQVGC
Sbjct: 67  PEIVEIHGSADTTRKFLTKMEDGSL-----VESVIIPAAAAENGEKSERVTLCVSSQVGC 121

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +  C FC +G   L R+LT  EI+ Q+L A ++ G                 ++++NIV 
Sbjct: 122 AFGCKFCASGLLGLKRHLTTGEIIGQILSAEAIAG-----------------KRVNNIVF 164

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243
           MGMGEPL NFDN+  +L I +   GL    R IT+STSGFVP + ++      + LA+SL
Sbjct: 165 MGMGEPLSNFDNLADALEIITSHRGLEIGARHITISTSGFVPGLKKLAAYPRQIRLAVSL 224

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H  ++++R+ ++P+N+K+PL  LI A   +    N    T EY++++ INDSP+DA +L+
Sbjct: 225 HGATDEVRDQIMPVNKKWPLSQLIPALEEWNRGRNQMP-TLEYILIRDINDSPKDASHLV 283

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +I K + AK+NLIP+N   G  +    ++   +F + + ++     +R  +G DI AACG
Sbjct: 284 RIAKRLHAKVNLIPYNTVEGLPWKRPSEERCRSFRDAVHKARIPVTMRYEKGHDINAACG 343

Query: 364 QLKSLSKRIP 373
           QL+   ++  
Sbjct: 344 QLRLRKEQEK 353


>gi|332300071|ref|YP_004441992.1| Ribosomal RNA large subunit methyltransferase N [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177134|gb|AEE12824.1| Ribosomal RNA large subunit methyltransferase N [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 341

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 187/363 (51%), Gaps = 30/363 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           ++G    +L E  + +G+P    +    QI  W+Y + +  +  M+++S++ R LL  H+
Sbjct: 7   ILGKTPAQLTELAVGLGLP----KYTGQQIADWLYQKHVSTWDEMTNLSKKARALLASHY 62

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I       ++ S DGT K+L         G   +ETV IPE  R TLCVSSQ GC + C
Sbjct: 63  EIGRAAPHLQQTSRDGTVKYLF------AAGGGFVETVMIPEGDRATLCVSSQRGCKMNC 116

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG Q    NL+A EIL Q+L    +                    +++NIV MGMG
Sbjct: 117 LFCMTGKQGFGANLSASEILNQILSVPEV-------------------NELTNIVFMGMG 157

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EP+ N D + + +   +D  GL+ S +RIT+ST G  P + R  EE    LAISLH    
Sbjct: 158 EPMDNIDTLLQVIRCLTDPKGLAMSPKRITVSTIGLRPGLERFLEECTCHLAISLHNPLP 217

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           + R  ++P+ R  PL   +   RHY   S  RR+TFEY++  G+ND+PR    L ++L  
Sbjct: 218 EERLAIMPVERAMPLADTVALLRHY-DWSRQRRLTFEYIVFSGLNDTPRHLAALKRLLSQ 276

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +   +NLI ++  P  +   SD   +    + +  +G  + IRT RG DI AACG L + 
Sbjct: 277 LDCHVNLIRYHRIPHIDLPSSDMTRMEWLRDRLCEAGIPTTIRTSRGEDISAACGMLSTQ 336

Query: 369 SKR 371
            ++
Sbjct: 337 EQQ 339


>gi|332826949|gb|EGJ99746.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 335

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 122/360 (33%), Positives = 188/360 (52%), Gaps = 29/360 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  +E      + G+P    R    QI  W+Y + +     M++IS   R LL++ + + 
Sbjct: 1   MTMDEFYGVAGECGLP----RFAAKQIADWVYKKRVTSIDQMTNISVANRALLSEKYDVG 56

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
               ++ + S DGT K+L +     +     IE V IPE  R TLCVSSQVGC + C FC
Sbjct: 57  RYIPLEFQQSVDGTVKYLFKTENDKL-----IEAVMIPEDDRATLCVSSQVGCKMNCLFC 111

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG Q    NLTA EIL Q+   R                       ++N+V MGMGEPL
Sbjct: 112 MTGKQGFNGNLTANEILNQLYSVRE-------------------AEDLTNVVFMGMGEPL 152

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251
            N++ +KK+L I +   G+++S +RIT+ST+G  P + R  +E    LAIS+H+   + R
Sbjct: 153 DNYEQLKKTLEIMTADYGMAWSPKRITVSTTGVTPKLKRFLDESNAHLAISIHSPEKEQR 212

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             ++P  + +P+  ++D  + Y   +  RR++FEY+M    NDS   A  L ++L+GI  
Sbjct: 213 LSIMPAEKAFPIAGVMDLLKEY-DWTKQRRLSFEYIMFDNFNDSLVHAKELAQMLRGIEC 271

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           ++NLI F+  P      S ++ +  F + +   G +S IR  RG DI AACG L ++  +
Sbjct: 272 RVNLIRFHAIPNVNLKTSTKEKMEAFRDYLTSKGVTSTIRASRGEDIFAACGMLSTMKSK 331


>gi|307565075|ref|ZP_07627588.1| radical SAM enzyme, Cfr family [Prevotella amnii CRIS 21A-A]
 gi|307346244|gb|EFN91568.1| radical SAM enzyme, Cfr family [Prevotella amnii CRIS 21A-A]
          Length = 347

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 192/373 (51%), Gaps = 31/373 (8%)

Query: 1   MN--FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
           MN   ++K  L+G    EL++    +G+P         QI +W+Y++ I+    M++IS+
Sbjct: 1   MNKTIIEKLPLLGKTLFELKQIAKDLGLPA----FAGKQIAEWLYIKHIKSIDEMTNISK 56

Query: 59  EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
             R  L++ ++I     +D + S DGT K+L             +ETVYIP+  R TLCV
Sbjct: 57  ANREKLSKVYTIGCKAPIDAQYSKDGTIKYLFPTEEDKF-----VETVYIPDNDRATLCV 111

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC + C FC TG Q    NL+  +IL Q+                          K
Sbjct: 112 SSQVGCKMNCLFCQTGKQGFEGNLSVTDILNQIYSL-------------------PEREK 152

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           ++NIV MG GEP+ N DNV ++  I +     ++S +RIT+S+ G    + R  +E    
Sbjct: 153 LTNIVFMGQGEPMNNIDNVLRTTEIMTAEYAYAWSPKRITVSSVGVKNKLKRFLDESQCQ 212

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           +AIS+H+   + R  L+P  R   ++ +I+   +Y   S+ RR++FEY++  G NDS   
Sbjct: 213 VAISMHSPLEEQRKELMPAERAMSIKEVINLLHNY-DFSHQRRLSFEYIVFGGKNDSLEH 271

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  +I ++KG+  ++NLI F+  P      SD   +  F + + R G  + IR  RG DI
Sbjct: 272 AKAIINLVKGLECRVNLIRFHQIPNVPLKGSDISTMEHFRDYLTRHGVFTTIRASRGQDI 331

Query: 359 LAACGQLKSLSKR 371
            AACG L +  K+
Sbjct: 332 FAACGLLSTAKKK 344


>gi|303272039|ref|XP_003055381.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463355|gb|EEH60633.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 430

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/402 (36%), Positives = 212/402 (52%), Gaps = 44/402 (10%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV--RGIRDFQGMSDISQE 59
             L K SL GM   +LE  L +IG        R +Q++ W+Y   + + D + M+D+S  
Sbjct: 49  RALAKVSLKGMRYADLERWLAEIGEKPS----RATQVFNWMYRPGKLVADVRDMADVSAA 104

Query: 60  VRHLLNQHFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE---KSRGT 115
            R  L    ++    E+ D + S DGT+K           G   +E+V IP      R T
Sbjct: 105 FREKLASLATVDGDLEMRDVRTSADGTKKVTYALAN----GGGVVESVIIPSNVPGGRTT 160

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           +CVSSQ+GC++ C FC+T    L RNLTA +I+ QV+ AR L                + 
Sbjct: 161 VCVSSQLGCAMNCQFCFTAKMGLRRNLTAAQIVEQVVHARRL--------------AEAD 206

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
               SN+V MGMGEPL N D V  ++ +  D  GL FSK ++T+STSG VP I R   E 
Sbjct: 207 DEASSNVVFMGMGEPLHNIDAVLAAVDVLLDDRGLGFSKNKVTVSTSGLVPEIERYLAES 266

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKG 291
              LA+SL+A ++++R+ ++PINRKY LE L+ A R      +  R    + FEY+ML+G
Sbjct: 267 QGSLAVSLNATTDEIRSWIMPINRKYNLERLLGALRANFPRRDGGRHQREVFFEYIMLEG 326

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
           +NDS  DA  L+ I + +P K NLI FN   G E+ CSD++ I+ F + +  +G +  IR
Sbjct: 327 VNDSAEDADRLVAIARTLPCKFNLIYFNTHDGSEFRCSDRETILAFRDRVVAAGVTCTIR 386

Query: 352 TPRGLDILAACGQLKS------------LSKRIPKVPRQEMQ 381
             RG +  AACGQL S              KR  ++   EM+
Sbjct: 387 QSRGDEEAAACGQLGSPDAMEDWKPSPPRMKRPKRLREMEME 428


>gi|283953675|ref|ZP_06371206.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794716|gb|EFC33454.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 356

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 137/378 (36%), Positives = 203/378 (53%), Gaps = 42/378 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +++  + EEL E +  +         R  QI++WIY +   +F  MS + +++R  L Q
Sbjct: 5   VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113
           +F     + V  + S D + K+L           + +E+V +P K              R
Sbjct: 57  NFHFSPVKCVKNEQSKDRSIKYLFEL-----IDGLRVESVLLPMKEEKIDEKGKRISHAR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC  +CSFC T    L RNL+A EI+ Q+L  +                  
Sbjct: 112 YTICVSSQVGCKSSCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               +  NIV MGMGEPL N  NV K++ I + + GL+ S RR T+STSG    I  +G+
Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQ 217

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +G++LAISLHAV+++LR  L+PIN+ Y +  ++DA R +P +   +R+ FEY+++ GI
Sbjct: 218 MNLGILLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIV-QRKRVMFEYLLIDGI 276

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+K+L GI AK+NLI FNP  G  Y     ++ + F + +   G +  IR 
Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYKRPSLENAIKFQDLLSSKGVTCTIRE 336

Query: 353 PRGLDILAACGQLKSLSK 370
            +GLDI AACGQLK   K
Sbjct: 337 SKGLDISAACGQLKERVK 354


>gi|169630257|ref|YP_001703906.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           abscessus ATCC 19977]
 gi|169242224|emb|CAM63252.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 373

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 192/377 (50%), Gaps = 28/377 (7%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             +    L  M  E+  + + ++G+P      R  QI    Y R + D   M+D+    R
Sbjct: 17  RAMPPRHLADMSLEQSRDVVTELGLPA----FRAKQIANQYYGRLVGDPATMTDLPAGAR 72

Query: 62  HLLNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
             + +       E +  +I+CD   TRK L R           +E+V +    R TLC+S
Sbjct: 73  GGVAEALFPRLLEPL-RQIACDAGDTRKTLWRLHD-----GSTVESVLMRYPDRNTLCIS 126

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ GC + C FC TG   L RNL+A EIL QV  A + L D           +P    ++
Sbjct: 127 SQAGCGMACPFCATGQGGLTRNLSAAEILEQVRDAAASLRD---------GQLPGGPGRL 177

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
           SNIV MGMGEPL N++ V   L   +     G   S+R +T+ST G  P I R+ +E +G
Sbjct: 178 SNIVFMGMGEPLANYNRVLTVLRKITAPPPEGFGISQRGVTVSTVGLAPAIRRLADEGLG 237

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V LA+SLH   ++LR+ LVP+N ++ +  ++DA R+Y  ++   R++ EY +++ +ND P
Sbjct: 238 VTLAVSLHCPDDELRDTLVPVNTRWAISEVLDAARYYADVTGR-RVSIEYALIRDVNDQP 296

Query: 297 RDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
             A  L K L+   G    +NLIP NP PG ++  S +     F   ++  G S  +R  
Sbjct: 297 WRADMLGKKLRKALGQMVHVNLIPLNPTPGSQWDASPKPVEREFVRRVREQGVSCTVRDT 356

Query: 354 RGLDILAACGQLKSLSK 370
           RG +I AACGQL +  +
Sbjct: 357 RGREIAAACGQLAASER 373


>gi|108760323|ref|YP_629532.1| radical SAM protein [Myxococcus xanthus DK 1622]
 gi|123374780|sp|Q1DCU1|RLMN1_MYXXD RecName: Full=Ribosomal RNA large subunit methyltransferase N 1;
           AltName: Full=23S rRNA m2A2503 methyltransferase 1
 gi|108464203|gb|ABF89388.1| radical SAM enzyme, Cfr family [Myxococcus xanthus DK 1622]
          Length = 359

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 189/370 (51%), Gaps = 26/370 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  + R  L   L   G           Q+W  +Y R    F  +  +  E+  +L +H
Sbjct: 8   NLYDLTRPALGALLSGWGF----GPYHRDQLWTALYRRHATTFDELDGLKPELLRMLREH 63

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             +       E  S DG T K LLR           IETV +  K R T+C+S+Q GC++
Sbjct: 64  TRLGQLATHHESFSSDGFTHKLLLRL-----DDGQTIETVLMRFKGRATVCISTQAGCAM 118

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L R+LT  EI+ Q+L    +              + + G  + N+V+MG
Sbjct: 119 GCVFCATGQMGLSRHLTPGEIVGQILHVNRI--------------LRASGETLRNVVLMG 164

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
           MGEPL N+++   ++ +  D++GL+   R ITLST G VP I R+  EE  + LA+SLH 
Sbjct: 165 MGEPLHNYEHTMSAVDVLVDALGLAMGPRFITLSTVGVVPGIRRLADEERPIHLAVSLHG 224

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++  R  LVP  R++PL+ L+DACR+Y       RI FE+ ++ G ND+   A  L ++
Sbjct: 225 ATDAERAALVPAGRRWPLDELMDACRYYSEKRKR-RIFFEWTLISGRNDTAEHAHTLGQL 283

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+ A +N+IP NP  G +   S  + +  F + +      S +R  RG+DI A CGQL
Sbjct: 284 LRGMDAHVNVIPLNPTVGYDGGPSRPESVRAFQDVLATYDVPSTVRQRRGIDIDAGCGQL 343

Query: 366 KSLSKRIPKV 375
           K+  +R  + 
Sbjct: 344 KATVERRSRR 353


>gi|312139245|ref|YP_004006581.1| radical sam protein [Rhodococcus equi 103S]
 gi|311888584|emb|CBH47896.1| radical SAM protein [Rhodococcus equi 103S]
          Length = 369

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 192/374 (51%), Gaps = 28/374 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +    L  +  +E +EA+ ++G+P      R  Q+ +  Y R   D   M+D+   +R  
Sbjct: 16  MPPRHLADLDADERKEAVKELGLPG----FRADQLARQYYGRLEADADKMTDLPAGMREK 71

Query: 64  LNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           +         ++V + ++CD   TRK L +     +     +E+V +    R TLC+SSQ
Sbjct: 72  VGAALFPRLLDVV-KHVACDAGQTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQ 125

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   L RNL+  EI+ QV  A + L D           +     ++SN
Sbjct: 126 AGCGMACPFCATGQGGLDRNLSTAEIVDQVRAAAAALRD---------GEVEGGPGRLSN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238
           IV MGMGEPL N+  V  ++   +     GL  S+R +T+ST G  P I ++  EE+ V 
Sbjct: 177 IVFMGMGEPLANYKRVVAAVRRITSPSPDGLGISQRAVTVSTVGLAPAIRKLADEEMSVR 236

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLH   ++LR+ LVP+N ++ +  ++DA R+Y   S   R++ EY +++ +ND P  
Sbjct: 237 LAVSLHTPDDELRDTLVPVNNRWSVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQPWR 295

Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           A  L K L    G    +NLIP NP PG ++  S +     F   ++  G S  +R  RG
Sbjct: 296 ADMLGKKLHKALGPLVHVNLIPLNPTPGSKWDASPKPVEREFVRRVQAQGVSCTVRDTRG 355

Query: 356 LDILAACGQLKSLS 369
            +I AACGQL + +
Sbjct: 356 QEIAAACGQLAAEN 369


>gi|18406673|ref|NP_564755.1| radical SAM domain-containing protein [Arabidopsis thaliana]
 gi|15451230|gb|AAK96886.1| Unknown protein [Arabidopsis thaliana]
 gi|20148295|gb|AAM10038.1| unknown protein [Arabidopsis thaliana]
 gi|332195547|gb|AEE33668.1| radical SAM domain-containing protein [Arabidopsis thaliana]
          Length = 458

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/380 (37%), Positives = 212/380 (55%), Gaps = 29/380 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRH 62
           +K  L GM    L+E +   G       M    +WK +Y   I   +   +  ++++++ 
Sbjct: 93  QKVVLKGMTYASLQEWVQSHGFRPGQALM----LWKRLYKDNIWANNVDELEGLNKDLKR 148

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121
           ++++H         D + + DGTRK L       +     IETV IP ++ R T+CVSSQ
Sbjct: 149 MISEHAEFGALSFKDIRSASDGTRKILFTLDDGLV-----IETVVIPCDRGRTTVCVSSQ 203

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C FCYTG   L RNLT  EI+ Q + AR LL    G               I+N
Sbjct: 204 VGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVGS--------------ITN 249

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +V MGMGEP  N DNV K+ +I  D  GL FS R++T+STSG VP + R   E    LA+
Sbjct: 250 VVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAV 309

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SL+A ++++RN ++PINRKY L +L++  R      +  ++ FEYVML G+NDS  DA  
Sbjct: 310 SLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDARR 369

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++++GIP KINLI FNP  G +++ +++  ++ F   +   G +  +R  RG D +AA
Sbjct: 370 LVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAA 429

Query: 362 CGQL---KSLSKRIPKVPRQ 378
           CGQL    ++   + +VP Q
Sbjct: 430 CGQLGMIGAVQAPVMRVPEQ 449


>gi|291514720|emb|CBK63930.1| 23S rRNA m(2)A-2503 methyltransferase [Alistipes shahii WAL 8301]
          Length = 342

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 133/364 (36%), Positives = 189/364 (51%), Gaps = 29/364 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ESL G   ++L     ++G+P    R    QI +W+YVR   D   M+DI+   R  L +
Sbjct: 5   ESLYGKTPDQLAALCGELGMP----RFAARQIARWLYVRHTEDPLRMTDIAAAHRQRLAE 60

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            FS           S DGT+K+L R           +E+ YIP+  R TLCVSSQ GC +
Sbjct: 61  WFSPALSAPERVTESADGTKKYLFRTL-----EGHYVESAYIPDGERATLCVSSQAGCRM 115

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG Q L ++LTA EIL Q +                         K++N+V MG
Sbjct: 116 GCRFCATGRQGLQQSLTAAEILNQAVSLPERD-------------------KLTNLVFMG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N D V ++L I +   G  +S  RITLST+G VP + R  +   V LA+SLH  
Sbjct: 157 MGEPLDNTDEVLRALEIITAEWGFGWSPTRITLSTAGVVPELRRFLDATKVHLAVSLHNP 216

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++ R  ++P+ R +P+  +    R Y   ++ RR++FEY+++ G+NDSPR    L ++L
Sbjct: 217 FHEERMEIMPVERAWPIAEVAAILREY-DFTHQRRVSFEYIVMSGLNDSPRHIRELTRLL 275

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            GI  +INLI F+  P   Y     + +V F + +   G  + IR  RG DI AACG L 
Sbjct: 276 NGIKCRINLIRFHRIPDSPYFSPGDEAMVRFRDALTARGIQTTIRASRGEDIQAACGLLS 335

Query: 367 SLSK 370
           +  K
Sbjct: 336 TRLK 339


>gi|313886711|ref|ZP_07820421.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923873|gb|EFR34672.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 341

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 187/363 (51%), Gaps = 30/363 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           ++G    +L E  + +G+P    +    QI  W+Y + +  +  M+++S++ R LL  H+
Sbjct: 7   ILGKTPTQLTELAVGLGLP----KYTGQQIADWLYQKHVSTWDEMTNLSKKARALLASHY 62

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I       ++ S DGT K+L         G   IETV IPE  R TLCVSSQ GC + C
Sbjct: 63  EIGRAAPHLQQTSRDGTVKYLF------AAGGGFIETVMIPEGDRATLCVSSQRGCKMNC 116

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG Q    NL+A EIL Q+L    +                    +++NIV MGMG
Sbjct: 117 LFCMTGKQGFGANLSASEILNQILSVPEV-------------------NELTNIVFMGMG 157

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EP+ N D + + +   +D  GL+ S +RIT+ST G  P + R  EE    LAISLH    
Sbjct: 158 EPMDNIDTLLQVIRCLTDPQGLAMSPKRITVSTIGLRPGLERFLEECTCHLAISLHNPLP 217

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           + R  ++P+ R  PL   +   RHY   S  RR+TFEY++  G+ND+PR    L ++L  
Sbjct: 218 EERLSIMPVERAMPLADTVALLRHY-DWSRQRRLTFEYIVFSGLNDTPRHLAALKRLLAQ 276

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +   +NLI ++  P  +   SD   +    + +  +G  + IRT RG DI AACG L + 
Sbjct: 277 LDCHVNLIRYHRIPHIDLPSSDMTRMEWLRDRLCEAGIPTTIRTSRGEDISAACGMLSTQ 336

Query: 369 SKR 371
            ++
Sbjct: 337 EQQ 339


>gi|296268984|ref|YP_003651616.1| radical SAM enzyme, Cfr family [Thermobispora bispora DSM 43833]
 gi|296091771|gb|ADG87723.1| radical SAM enzyme, Cfr family [Thermobispora bispora DSM 43833]
          Length = 388

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 187/374 (50%), Gaps = 25/374 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E  +A+ ++G        R  Q+ +  + R     + M+D+    R  L  
Sbjct: 32  RHLADLTMAERRDAVAELG----ERPFRADQLSRHYFGRLTASPEQMTDLPGGSRDRLVS 87

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                    V  +++CDG  TRK L R     +     +E+V +    R T+CVSSQ GC
Sbjct: 88  ALLPPLLTPV-RELACDGGTTRKTLWRLFDGAL-----VESVLMRYPDRTTICVSSQAGC 141

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ QV+          G   +    +P    +ISN+V 
Sbjct: 142 GMNCPFCATGQAGLTRNLSTAEIVEQVVA---------GARSLAKGEVPGGPGRISNVVF 192

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEP+ N+  V  ++   +     GL  S R IT+ST G VP I R+ +E + V LA+
Sbjct: 193 MGMGEPMANYKAVVAAIRRLTSPVPEGLGISARGITVSTVGLVPAIERLAQEGLPVTLAV 252

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVPIN ++ +  ++DA  +Y  ++   R++ EY +++ IND    A  
Sbjct: 253 SLHAPDDELRDTLVPINTRWKVAEVLDAAWNYAAVTKR-RVSIEYALIRDINDQEWRADL 311

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++L+G  A +NLIP NP PG  +  S  +D   F   ++  G    +R  RG +I  A
Sbjct: 312 LGRLLQGRLAHVNLIPLNPTPGSPWTASRPRDERAFVRRLESYGIPVTVRDTRGREIDGA 371

Query: 362 CGQLKSLSKRIPKV 375
           CGQL +  +   K 
Sbjct: 372 CGQLAARDREDRKA 385


>gi|229817667|ref|ZP_04447949.1| hypothetical protein BIFANG_02938 [Bifidobacterium angulatum DSM
           20098]
 gi|229785456|gb|EEP21570.1| hypothetical protein BIFANG_02938 [Bifidobacterium angulatum DSM
           20098]
          Length = 395

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 184/368 (50%), Gaps = 26/368 (7%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           + M  +E      ++G+P    + R  Q+    Y     +    +D     R      F 
Sbjct: 47  VDMSEDERIAKAKELGLP----KFRVKQLANHYYGHFDVNAAAFTDFPASKRDEAASVFF 102

Query: 70  IIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
                 V  +++  GT  K L R           IE+V +   +R TLC+SSQVGC + C
Sbjct: 103 PELITEVTRQVADKGTTIKTLWRLFD-----GSHIESVLMRYPTRSTLCISSQVGCGMGC 157

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG   L RN++A EIL QV +A  ++ D           +     ++SNIV MGMG
Sbjct: 158 PFCATGQLGLTRNMSAGEILEQVRVAARMMQD---------GEVAGGPGRLSNIVFMGMG 208

Query: 189 EPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           EP+ N+ +V  ++   S     G   S R IT+ST G VP I ++ EE I V LA+SLHA
Sbjct: 209 EPMGNYRSVLSAVRQISALPPQGFGISARNITVSTVGVVPGIRKLTEEGIPVRLAVSLHA 268

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            S++LR+ LVP+N+++    ++DA   Y  L+  RR++ EY +++GIND    A  L K 
Sbjct: 269 PSDELRDELVPMNKRFNTTAVLDAAHDYW-LATKRRVSIEYALMRGINDQAEHARLLAKR 327

Query: 306 LK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           L       A +N IP NP  G ++  S  +D   F + +  +G ++ +R  RG DI  AC
Sbjct: 328 LNHYGDDWAHVNPIPLNPIEGSKWTASKPEDEKRFLDILHAAGITATLRDTRGQDIDGAC 387

Query: 363 GQLKSLSK 370
           GQL +  +
Sbjct: 388 GQLAAKER 395


>gi|94984740|ref|YP_604104.1| hypothetical protein Dgeo_0633 [Deinococcus geothermalis DSM 11300]
 gi|123079957|sp|Q1J0P9|RLMN_DEIGD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|94555021|gb|ABF44935.1| 23S rRNA m(2)A-2503 methyltransferase [Deinococcus geothermalis DSM
           11300]
          Length = 344

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/336 (35%), Positives = 175/336 (52%), Gaps = 22/336 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++V+G+  F+ M+++  + R  L   F +     ++   S DG+ K+L   
Sbjct: 17  FRQRQLLEWVFVQGVGTFEAMTNLPAQARADLASRFRLNPFREIETVRSADGSVKYLFTL 76

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                    ++E VY+P   R T+CVS+ VGC   C+FC TG     RNLT  EI+ QVL
Sbjct: 77  QD-----GRQMEAVYMPYLDRKTICVSTMVGCPAKCAFCATGAMGFGRNLTPGEIVGQVL 131

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                 G  P              R++ N+V MGMGEPL N++N  ++  I      L  
Sbjct: 132 AVAGGEGLAP--------------RELRNLVFMGMGEPLLNYENTMQAARILLHPQALGM 177

Query: 213 SKRRITLSTSGFVPNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
           SKRR+TLST G    I R+   +++G+ LAISLHA     R  ++P   +  +  ++ A 
Sbjct: 178 SKRRVTLSTVGLPKGIRRLAAEDDLGIKLAISLHAPDEATRQRIIPTGHRNSIAEIMAAA 237

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R Y  ++   R+TFEY ML+GIND    A  L  +L+G+ + +NLIP NPW G  +  S 
Sbjct: 238 REYQAVTGR-RVTFEYSMLRGINDHLWQAEELADLLRGLVSHVNLIPMNPWDGSGFESST 296

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           ++ I  F + +   G    +R  RG D  AACGQL 
Sbjct: 297 EEQIQAFYDVLAARGVDVSVRRSRGKDAGAACGQLA 332


>gi|150021379|ref|YP_001306733.1| ribosomal RNA large subunit methyltransferase N [Thermosipho
           melanesiensis BI429]
 gi|205829916|sp|A6LN47|RLMN_THEM4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|149793900|gb|ABR31348.1| radical SAM enzyme, Cfr family [Thermosipho melanesiensis BI429]
          Length = 340

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 206/367 (56%), Gaps = 30/367 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++ +  EEL     +IG+     + R  Q+  WIY + + +F+ M+++S+E R LL++
Sbjct: 2   KNILDLKYEELVNEFQRIGLE----KYRVDQVLNWIYKKKVFEFEKMTNLSKEHRKLLSE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F I  P+++D +IS  D T K+L             IE+V +    R T C+S+QVGC 
Sbjct: 58  KFFIDLPKLLDMQISKIDKTTKFLWELRD-----GNTIESVALFHSGRVTACISTQVGCP 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG    VRNLT  EI+ Q+L                     +   K+ N+V M
Sbjct: 113 VKCEFCATGQSGFVRNLTVGEIVSQILAIE-----------------LNRKIKVGNVVYM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL NF+NV  S+ + +D   L+   RRIT+ST G    I  + E  + V LA+SLH
Sbjct: 156 GMGEPLLNFENVIDSIKMLNDKKMLNIGIRRITVSTVGIPEKIIALAESGLNVKLALSLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV++  R+ ++P+N+KY +E LI + R Y  ++   R+T EY++++  ND P DA+ L++
Sbjct: 216 AVTDYKRDQIIPLNKKYSVEELIYSLRKYQEIT-GNRVTIEYILIREFNDYPEDAIRLVE 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+G+   +NLIP NP    ++   ++  +  F E ++++G    IR  +G DI AACGQ
Sbjct: 275 LLRGLSVYVNLIPINPV-NPKFHRPNRWALERFKEILEKNGIECEIRKEKGTDIDAACGQ 333

Query: 365 LKSLSKR 371
           L+    R
Sbjct: 334 LRRRKLR 340


>gi|228470999|ref|ZP_04055844.1| radical SAM enzyme, Cfr family [Porphyromonas uenonis 60-3]
 gi|228307396|gb|EEK16410.1| radical SAM enzyme, Cfr family [Porphyromonas uenonis 60-3]
          Length = 341

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/363 (34%), Positives = 188/363 (51%), Gaps = 30/363 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           ++G    +L E  + +G+P    +    QI  W+Y + +  +  M+++S++ R LL  H+
Sbjct: 7   ILGKTPAQLTELAVGLGLP----KYTGRQIADWLYQKHVSSWDEMTNLSKKARALLASHY 62

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I       ++ S DGT K+L         G   +ETV IPE  R TLCVSSQ GC + C
Sbjct: 63  EIGRAAPHLQQTSRDGTVKYLF------AAGGGFVETVMIPEGDRATLCVSSQRGCKMNC 116

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG Q    NL+  EIL Q+L    +                    +++NIV MGMG
Sbjct: 117 LFCMTGKQGFGANLSTSEILNQILSVPEV-------------------NELTNIVFMGMG 157

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EP+ N D + + ++  +D  GL+ S +RIT+ST G  P + R  EE    LAISLH   +
Sbjct: 158 EPMDNIDTLLQVITCLTDPQGLAMSPKRITVSTIGLRPGLERFLEECTCHLAISLHNPLS 217

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           + R  ++P+ R  PL   +   RHY   S  RR+TFEY++  G+ND+PR    L ++L  
Sbjct: 218 EERLSIMPVERAMPLADTVALLRHY-DWSRQRRLTFEYIVFSGLNDTPRHLAALKRLLAQ 276

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +   +NLI ++  P  +   SD   +    + +  +G  + IRT RG DI AACG L + 
Sbjct: 277 LDCHVNLIRYHRIPHIDLPSSDMTRMEWLRDWLCEAGIPTTIRTSRGEDISAACGMLSTQ 336

Query: 369 SKR 371
            ++
Sbjct: 337 EQQ 339


>gi|157736328|ref|YP_001489011.1| hypothetical protein Abu_0057 [Arcobacter butzleri RM4018]
 gi|205829660|sp|A8EQW8|RLMN_ARCB4 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157698182|gb|ABV66342.1| conserved hypothetical protein, radical SAM enzyme, Cfr family
           [Arcobacter butzleri RM4018]
          Length = 360

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/372 (35%), Positives = 200/372 (53%), Gaps = 32/372 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S+     +EL+E L            R  Q++ W+Y +    +  M ++ +E+   L +
Sbjct: 7   PSIYDYTLDELKEILK--------PSFRAKQVYNWLYKKYASSYDEMKNLPKELVEDLKE 58

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI--------ETVYIPEKSRGTLCV 118
           ++ I   +IV ++ S DG+ K+L +         V +        E   I    + T+C+
Sbjct: 59  NYPIDIMQIVKKEQSRDGSIKYLFKLRDNHTVEAVLLLMKDKKIDEDGQIVRSEKYTVCI 118

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC + CSFC T     VRNLT  E + Q++  +                      K
Sbjct: 119 SSQVGCKVGCSFCLTAKGGFVRNLTVGEYIAQIVNIKRDNDI--------------AENK 164

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGV 237
             NIV MGMGEPL NFDN  K++ I S+  GL+ S+RR T+STSG    I ++GE ++ +
Sbjct: 165 ALNIVYMGMGEPLDNFDNFTKAVEIFSELDGLAISRRRQTVSTSGIATKIKKLGEKDLQI 224

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LAISLHAV ++LR+ L+P+N+ Y +  +I A + +P +   +++ FEY+++K  NDS  
Sbjct: 225 QLAISLHAVDDELRSELIPMNKAYNIASIIQAVKAFP-VDTRKKVMFEYLVIKDKNDSIE 283

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L+ +L GI AK+NLI FNP+PG  Y    +KD++ F + + + G    IR  +GLD
Sbjct: 284 AAKKLVSLLNGIQAKVNLIYFNPYPGTSYQRPQEKDMLKFKDFLNQKGVICTIRESKGLD 343

Query: 358 ILAACGQLKSLS 369
           I AACGQLK   
Sbjct: 344 ISAACGQLKEKE 355


>gi|330813248|ref|YP_004357487.1| ribosomal RNA large subunit methyltransferase N [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486343|gb|AEA80748.1| ribosomal RNA large subunit methyltransferase N [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 356

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/376 (42%), Positives = 238/376 (63%), Gaps = 22/376 (5%)

Query: 1   MNFLKKESLIGMMREELEEALLKI-GIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
           MNF    +   +   +L + +     + ++   MRT+QIWK++Y +G+R+    S+IS E
Sbjct: 1   MNF---SNFYDLSYSDLSDFISSNFSLEKKKTSMRTNQIWKFVYKKGLRETSKFSNISSE 57

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           +++ + + F+     I ++KIS DGT KWLL+     +     +ETV+IP   RGTLCVS
Sbjct: 58  LKYNIEKSFNFNRTNIAEKKISKDGTIKWLLKLSDNNL-----VETVFIPSGKRGTLCVS 112

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC+L C FC+TGTQ +V+NLT  EI+ Q+L+A+  L D+               +KI
Sbjct: 113 SQVGCTLNCKFCHTGTQLMVKNLTTHEIINQILVAKDELNDWGSQ------------KKI 160

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +NIV MGMGEP  N+DNVKKS+SI  +  GL +S ++IT+ST+G    I +  +EIG  L
Sbjct: 161 TNIVYMGMGEPFYNYDNVKKSISILRERNGLDYSAKKITVSTAGISNEIMKAADEIGTYL 220

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA +++LR  ++PIN+K+ ++ LI++C +Y  + N  +I  EYV+LK IND+   A
Sbjct: 221 ALSLHAPTDELREKIMPINKKFKIKDLIESCSYYSKI-NKEKIFLEYVLLKDINDTDSCA 279

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+K++   P+K+NLI FN WPG  Y  SD + +  F E IK+SG+   +R  RG DIL
Sbjct: 280 QQLVKLMSKFPSKLNLIEFNAWPGVGYEPSDSETVQKFYEKIKKSGHIVTLRKSRGEDIL 339

Query: 360 AACGQLKSLSKRIPKV 375
            ACGQLK+ S++  K 
Sbjct: 340 GACGQLKTDSEKKRKS 355


>gi|325478666|gb|EGC81777.1| 23S rRNA m2A2503 methyltransferase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 341

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 200/368 (54%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           KE++     +ELEE   + G      + R  Q+++ I+V  I DF  M+D+S+++R  L+
Sbjct: 2   KENINDKSIKELEEIFEENGY----KKFRAKQVYRQIHVNKINDFSKMTDLSKDMREALD 57

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + +     ++  E +S  D T+K+L       I     IE+VY+  ++R T+C+SSQVGC
Sbjct: 58  KKYKFSSLKLRREFVSKIDSTKKYLFELEDGNI-----IESVYMEYENRKTICISSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +    LVRN+TA E++ +V     + GD                  I+NIV+
Sbjct: 113 RMGCKFCASTKNGLVRNMTAAELIEEVYELERINGD------------------INNIVI 154

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEPL N+DN+KK + I +D  G + S R ITLSTSG  P I ++ +  + + LA+SL
Sbjct: 155 MGIGEPLDNYDNIKKFIEIITDEKGRNLSHRSITLSTSGLAPMIIKLADSGLDINLALSL 214

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H   +  R   +P++ KY +  L+ A  +Y   +   R++FEYV++ G+N+   D  NL+
Sbjct: 215 HYADDKKRRQFMPVSNKYSIRELMKATDYYLDKTKR-RVSFEYVVIDGVNNLDEDVDNLV 273

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG    INLIP NP     Y       +  F + +     ++ IR   G DI A+CG
Sbjct: 274 RLLKGKNVHINLIPLNPIEEFSYNKPKNTALKEFRDKLVSKKLNATIRRSMGSDIDASCG 333

Query: 364 QLKSLSKR 371
           QL++   R
Sbjct: 334 QLRNNYAR 341


>gi|237721458|ref|ZP_04551939.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449254|gb|EEO55045.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 344

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 197/367 (53%), Gaps = 29/367 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L+GM   EL+    ++ +P         QI  W+Y + +     M+++S + R L
Sbjct: 1   MSKYPLLGMTLVELQSLTKRLDMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L Q++ +     VDE  S DGT K+L +     +G    +E+VYIP+  R TLCVSSQVG
Sbjct: 57  LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q    NLTA +I+ Q+                          K++N+V
Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI-------------------HSLPERDKLTNVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           MMGMGEPL N D V K+L + + + G ++S +RITLST G    + R  EE    LAISL
Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R  L+P  + + +  +++  ++Y   S  RR++FEY++ KG+NDS   A  L+
Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  ++NLI F+  PG +   +D   +  F + +   G  + IR+ RG DI AACG
Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331

Query: 364 QLKSLSK 370
            L +  +
Sbjct: 332 MLSTAKQ 338


>gi|225156281|ref|ZP_03724759.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2]
 gi|224803013|gb|EEG21258.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2]
          Length = 367

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 138/371 (37%), Positives = 192/371 (51%), Gaps = 16/371 (4%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  + R +L   +   G+   H     +++W ++Y+    D + MSD+   +R  L  
Sbjct: 6   IHLHDLPRVDLTALVASWGLSPVH----AARLWAYLYLEDTDDIRAMSDLPARMRDRLLA 61

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             S     +  E  S DG TRK+LL           EIETV +  K R T CVSSQVGC+
Sbjct: 62  ETSAARLPVACETHSSDGFTRKYLLALSD-----GREIETVLMRYKGRVTACVSSQVGCA 116

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLA----RSLLGDFPGCEDIEGMVIPSVGRKISN 181
           + C FC TG     R+LTA EI+ Q L      R    D P   +           ++ N
Sbjct: 117 MGCVFCATGQMGFTRHLTAGEIVAQALHVDRVLRRTADDAPALAEPGNASPHHRHERLRN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
           IV+MGMGEPL N+D V +++ I  D  GL+   R+ITLST G VP I R+ +E   V LA
Sbjct: 177 IVLMGMGEPLHNYDAVMRAIDILRDGNGLALGARKITLSTVGVVPGIIRLADEHNPVHLA 236

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLH  +   R  LVP  R +PL+ L++ACR+Y      RRI FE+ +++G ND P  A 
Sbjct: 237 VSLHGATQAERAALVPAARAWPLDALMEACRYYVQ-KQQRRIFFEWTLIEGKNDGPDQAR 295

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            + ++L+G+ A++NLIP NP  G             F   +   G  S IR  RG+DI A
Sbjct: 296 AVGRLLRGMQAQVNLIPLNPTSGYAGEPGRADAAKRFQAVLAEHGLPSTIRQRRGIDIGA 355

Query: 361 ACGQLKSLSKR 371
            CGQL + S+R
Sbjct: 356 GCGQLATESRR 366


>gi|3249072|gb|AAC24056.1| Contains similarity to hypothetical 43.1 KD protein in NDK-GCPE
           intergenic region gb|493519 from E. coli sequence
           gb|U02965 [Arabidopsis thaliana]
          Length = 454

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/380 (37%), Positives = 212/380 (55%), Gaps = 29/380 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRH 62
           +K  L GM    L+E +   G       M    +WK +Y   I   +   +  ++++++ 
Sbjct: 89  QKVVLKGMTYASLQEWVQSHGFRPGQALM----LWKRLYKDNIWANNVDELEGLNKDLKR 144

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121
           ++++H         D + + DGTRK L       +     IETV IP ++ R T+CVSSQ
Sbjct: 145 MISEHAEFGALSFKDIRSASDGTRKILFTLDDGLV-----IETVVIPCDRGRTTVCVSSQ 199

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C FCYTG   L RNLT  EI+ Q + AR LL    G               I+N
Sbjct: 200 VGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVGS--------------ITN 245

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +V MGMGEP  N DNV K+ +I  D  GL FS R++T+STSG VP + R   E    LA+
Sbjct: 246 VVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAV 305

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SL+A ++++RN ++PINRKY L +L++  R      +  ++ FEYVML G+NDS  DA  
Sbjct: 306 SLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDARR 365

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++++GIP KINLI FNP  G +++ +++  ++ F   +   G +  +R  RG D +AA
Sbjct: 366 LVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAA 425

Query: 362 CGQL---KSLSKRIPKVPRQ 378
           CGQL    ++   + +VP Q
Sbjct: 426 CGQLGMIGAVQAPVMRVPEQ 445


>gi|160903334|ref|YP_001568915.1| radical SAM protein [Petrotoga mobilis SJ95]
 gi|205829799|sp|A9BIC0|RLMN_PETMO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|160360978|gb|ABX32592.1| radical SAM enzyme, Cfr family [Petrotoga mobilis SJ95]
          Length = 347

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 204/371 (54%), Gaps = 31/371 (8%)

Query: 4   LKKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
           ++ ++++     +L+  LL ++G+     + RT QI  WIY + + DF+ M+++S++ R 
Sbjct: 1   MQTKNILDFEYSDLQSYLLNELGLE----KFRTDQICDWIYKKRVFDFESMTNLSKDDRQ 56

Query: 63  LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            L+ +F I  P IV +++S  DGT K+LL    +       +E V I   SR   C+S+Q
Sbjct: 57  KLSDNFKISIPHIVKKEVSKIDGTTKYLLELEDKNT-----VEAVIIYYPSRTIACISTQ 111

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC L CSFC TG    VRNL+  EI+ Q+L                          + N
Sbjct: 112 VGCPLKCSFCSTGQSGYVRNLSTGEIIGQLLAMEK-----------------DKEMDVKN 154

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLA 240
           +V MGMGEPL NF+NV +++ I +         R IT+ST+G    I  VG+      L+
Sbjct: 155 VVYMGMGEPLLNFNNVVQTIEILNHPKMKKLGARHITISTAGIPQKIEEVGDLNKEFRLS 214

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +N  R+ ++PIN KYP+E +I +CR Y   +   R+TFEY+++KG NDS  DAL
Sbjct: 215 VSLHAPTNLQRDQIMPINHKYPVEQVIQSCRIYQKKTKK-RVTFEYILIKGFNDSKEDAL 273

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+++   +   +NLIP N  P   +    ++ I  F + + ++G  + +R  +G DI A
Sbjct: 274 KLVELFGDLKVMVNLIPVNENP-AGFEKPSKRFIQAFLDTLVKNGIDAVVRAEKGSDISA 332

Query: 361 ACGQLKSLSKR 371
           ACGQL++   +
Sbjct: 333 ACGQLRTRELK 343


>gi|284032622|ref|YP_003382553.1| radical SAM enzyme, Cfr family [Kribbella flavida DSM 17836]
 gi|283811915|gb|ADB33754.1| radical SAM enzyme, Cfr family [Kribbella flavida DSM 17836]
          Length = 372

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/371 (32%), Positives = 181/371 (48%), Gaps = 27/371 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-N 65
             L  +  EE   A+  +G P      R  Q+    + R + D   M+D+    R  L  
Sbjct: 20  RHLADLSGEERRAAVTALGEPA----FRAKQLSNHYFSRLVSDPAEMTDLPAASRDKLVA 75

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +    +  ++ D +     TRK L +     +     +E+V +    R T+CVSSQ GC 
Sbjct: 76  ELMPPLLTKVRDLECDNGQTRKSLWKLLDGSL-----VESVLMRYTDRTTMCVSSQAGCG 130

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RN+T  EI+ QV+          G   +    I     +++NIV M
Sbjct: 131 MACPFCATGQAGLTRNMTTAEIVEQVV---------DGARALSRGEIAGGPGRVNNIVFM 181

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           GMGEP+ N+  V  ++   +D    GL  S R IT+ST G VP I ++  E I V LA+S
Sbjct: 182 GMGEPMANYKAVIGAVRRFTDPSPEGLGISARGITVSTVGLVPRINQLAGEGIPVTLALS 241

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVPIN ++ ++ ++DA   Y   +   R++ EY M++ IND    A  L
Sbjct: 242 LHAPDDELRDELVPINNRWKVDEVLDAAWGYAQQTKR-RVSIEYAMIRDINDHAWRADLL 300

Query: 303 IKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
            + L          +NLIP NP PG ++  SD  D   F   ++  G  + +R  RG +I
Sbjct: 301 AEKLAARGDWGWVHVNLIPLNPTPGSKWTASDPADEREFVRRLQAGGIPTTVRDTRGQEI 360

Query: 359 LAACGQLKSLS 369
             ACGQL + +
Sbjct: 361 DGACGQLAAAN 371


>gi|227497538|ref|ZP_03927766.1| possible Fe-S-cluster redox protein [Actinomyces urogenitalis DSM
           15434]
 gi|226832992|gb|EEH65375.1| possible Fe-S-cluster redox protein [Actinomyces urogenitalis DSM
           15434]
          Length = 392

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/383 (33%), Positives = 187/383 (48%), Gaps = 32/383 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +     +  L   G+P      R  Q+ +  + R  RD Q M+D+    R  L  
Sbjct: 32  RHLADLDLAGRKAVLKDAGLPA----FRADQLSRHYFTRFTRDAQDMTDLPASQREQLAA 87

Query: 67  HFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               + P+++ E  +   DG  T K L           V +E+V +  K R TLCVSSQ 
Sbjct: 88  E---LLPDLIHEVRALRADGGRTIKHLWELHD-----GVRVESVLMRYKDRTTLCVSSQA 139

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A  +          E   +     ++SN+
Sbjct: 140 GCGMACPFCATGQMGLTRNLSTGEIIEQVRHAAQVS---------ERGDLTGGPARLSNV 190

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEP+ N+ NV  +L   +     G   S R IT+ST G VP I ++  E + V L
Sbjct: 191 VFMGMGEPMINYKNVVAALRRLTSPAPEGFGMSARGITVSTVGLVPLIRKLSTEGMPVTL 250

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ L+PIN K+ +  L+DA   Y   +  RR++ EY ++K +ND    A
Sbjct: 251 AVSLHAPDDELRDELIPINSKWKVGELLDAAYDYYS-TTGRRVSIEYALIKDMNDHAWRA 309

Query: 300 LNLIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L   L  +G   A +N IP NP PG  + CS+      F + ++R+G ++ +R  RG 
Sbjct: 310 QLLADELNARGRGWAHVNPIPLNPTPGSIWTCSEPDVQELFVDTLRRAGITTTVRDTRGS 369

Query: 357 DILAACGQLKSLSKRIPKVPRQE 379
           DI  ACGQL +      +   + 
Sbjct: 370 DIDGACGQLATEVLNQERARTRR 392


>gi|254304122|ref|ZP_04971480.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324314|gb|EDK89564.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 358

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 201/380 (52%), Gaps = 34/380 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN  +K +++ + +EEL E L+ +G+     +    +++ W++ +  R F  M+++S + 
Sbjct: 1   MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKIARSFDEMTNLSLKD 55

Query: 61  RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113
           R +L +   I +  ++  ++S  D T K+L             IETV +  K       R
Sbjct: 56  REILKEKTYIPFFNLLKYQVSKIDKTEKFLFELEDGGT-----IETVLLRHKDSKNKEIR 110

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            TLCVSSQVGC + CSFC TG    +RNL+  EIL QV                    + 
Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQVYTVER--------------RLR 156

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232
             G  ++N+V MGMGEPL N DN+ KSLSI S+  G++ SKR+IT+STSG V  I + + 
Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILL 216

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           ++I + LA+SLH+  N+ R+ ++PIN+ +PLE L      Y   +   R+TFEY+++   
Sbjct: 217 DKIPIELAVSLHSAINEKRDKIIPINKNFPLEDLSAVLVEYQKQTKR-RVTFEYILIDNF 275

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351
           N S  DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R
Sbjct: 276 NISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRKVNVTLR 335

Query: 352 TPRGLDILAACGQLKSLSKR 371
             +G DI  ACGQL+  +K+
Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355


>gi|325673450|ref|ZP_08153141.1| cfr family radical SAM enzyme [Rhodococcus equi ATCC 33707]
 gi|325555471|gb|EGD25142.1| cfr family radical SAM enzyme [Rhodococcus equi ATCC 33707]
          Length = 369

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 192/374 (51%), Gaps = 28/374 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +    L  +  +E +EA+ ++G+P      R  Q+ +  Y R   D   M+D+   +R  
Sbjct: 16  MPPRHLADLDADERKEAVKELGLPG----FRADQLARQYYGRLEADADKMTDLPAGMREK 71

Query: 64  LNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           +         ++V + ++CD   TRK L +     +     +E+V +    R TLC+SSQ
Sbjct: 72  VGAALFPRLLDVV-KHVACDAGQTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQ 125

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   L RNL+  EI+ QV  A + L D           +     ++SN
Sbjct: 126 AGCGMACPFCATGQGGLDRNLSTAEIVDQVRAAAAALRD---------GEVEGGPGRLSN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238
           IV MGMGEPL N+  V  ++   +     GL  S+R +T+ST G  P I ++  EE+ V 
Sbjct: 177 IVFMGMGEPLANYKRVVAAVRRITSPSPDGLGISQRAVTVSTVGLAPAIRKLADEEMSVR 236

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLH   ++LR+ LVP+N ++ +  ++DA R+Y   S   R++ EY +++ +ND P  
Sbjct: 237 LAVSLHTPDDELRDTLVPVNNRWAVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQPWR 295

Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           A  L K L    G    +NLIP NP PG ++  S +     F   ++  G S  +R  RG
Sbjct: 296 ADMLGKKLHKALGPLVHVNLIPLNPTPGSKWDASPKPVEREFVRRVQAQGVSCTVRDTRG 355

Query: 356 LDILAACGQLKSLS 369
            +I AACGQL + +
Sbjct: 356 QEIAAACGQLAAEN 369


>gi|323344170|ref|ZP_08084396.1| cfr family radical SAM enzyme [Prevotella oralis ATCC 33269]
 gi|323094899|gb|EFZ37474.1| cfr family radical SAM enzyme [Prevotella oralis ATCC 33269]
          Length = 346

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 192/370 (51%), Gaps = 29/370 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+GM   EL+    ++ +P         Q+ KW+Y + +     M++IS+  R  L 
Sbjct: 5   KIPLLGMTLSELKTVAKELEMPA----FTGGQMAKWLYRQHVASIDDMTNISKSNREKLK 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + +++     +DE+ S DGT K+L             +ETVYIP++ R TLCVSSQVGC 
Sbjct: 61  KAYTVGCASPIDEQHSNDGTIKYLF-----PTEQGKYVETVYIPDEERATLCVSSQVGCK 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG Q    NLTA +IL Q+                          K++NIV M
Sbjct: 116 MNCLFCQTGKQGYEGNLTATDILNQIYALPERD-------------------KLTNIVFM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           G GEP+ N +NV ++ +I +     ++S +RIT+S+ G    + R  EE    +AISLH+
Sbjct: 157 GQGEPMDNLENVLRATNILTADYAYAWSPKRITVSSVGVRNKLKRFLEESDCHVAISLHS 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++ R  L+P     P+  ++D  R+Y   S+ RR++FEY++  GIND+   A  ++K+
Sbjct: 217 PIHEQRAGLMPAEGGMPIREIVDLLRNY-DFSHQRRLSFEYIVFGGINDTQTHAKEIVKL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG+  +INLI F+  P      +D + +  F + +   G  + IR  RG DI AACG L
Sbjct: 276 LKGLDCRINLIRFHQIPNVPLRGADDRTMEAFRDYLTAHGLFTTIRASRGEDIFAACGLL 335

Query: 366 KSLSKRIPKV 375
            +  K   + 
Sbjct: 336 STAKKHADEK 345


>gi|226227123|ref|YP_002761229.1| hypothetical protein GAU_1717 [Gemmatimonas aurantiaca T-27]
 gi|259491989|sp|C1A949|RLMN_GEMAT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|226090314|dbj|BAH38759.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 360

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 134/383 (34%), Positives = 190/383 (49%), Gaps = 37/383 (9%)

Query: 7   ESLIGMMREE----LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
             L+    +     L E +   G P      R +Q++  ++ R +R F  M+++ + +R 
Sbjct: 5   PDLLDFDPDAALALLGEWMAARGEPA----YRAAQVFGRLWQRPVRSFDEMTELPKALRE 60

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L   F I   E+   + S DGT K+L R     +     IETV IP+  R T C+SSQ 
Sbjct: 61  GLAGSFRITALELTTRQKSMDGTEKFLFRMHDGQL-----IETVAIPDGDRLTFCISSQA 115

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C+FC TG     RNL   EI  QV   R L                      +NI
Sbjct: 116 GCALQCAFCATGAMGFQRNLHPSEIAGQVRELRMLTPSIVP----------------TNI 159

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241
           V MGMGEPL N+  V  +LS+ +D   L    R IT+ST G +P I  +        LAI
Sbjct: 160 VFMGMGEPLMNWKAVSPTLSLLNDPRALGIGARHITISTVGVLPGIVALAARPEQFRLAI 219

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           S+HA S+ LR  L+P+N KYPL  +I A R +       R+TFEYVML G+ND P  A  
Sbjct: 220 SIHAPSDALRRTLMPVNTKYPLADVIAAAREFDR-----RVTFEYVMLGGVNDQPEHAAQ 274

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++ +   A +NLIP +P     +  S    I  F++ I+  G  + +R  RGLDI AA
Sbjct: 275 LAQLARDCRAFVNLIPLHPGGSMGFSPSTTPTINAFAKAIRARGVETAVRRSRGLDIAAA 334

Query: 362 CGQLKSL--SKRIPKVPRQEMQI 382
           CGQL++    +R+P   +   ++
Sbjct: 335 CGQLRTERLGRRLPVAAQDHGEV 357


>gi|257451432|ref|ZP_05616731.1| florfenicol resistance protein [Fusobacterium sp. 3_1_5R]
 gi|257466897|ref|ZP_05631208.1| florfenicol resistance protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918044|ref|ZP_07914284.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|317058012|ref|ZP_07922497.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
 gi|313683688|gb|EFS20523.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
 gi|313691919|gb|EFS28754.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 349

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/372 (34%), Positives = 196/372 (52%), Gaps = 28/372 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K +L+ + ++EL E L+  G+     +    +++ W++ +  R+ Q M+++S + R +
Sbjct: 1   MEKLNLLDLSKKELTEFLVAEGM----KKFYGKEVFVWLHKKFARNIQEMTNLSLQNREI 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQ 121
           L +   I Y  ++  ++S  D T K+L +           IETV +  +  R TLC+SSQ
Sbjct: 57  LEEKTYIPYLNLLKHQVSKIDKTEKFLFQLED-----GNTIETVLLRHRDQRNTLCISSQ 111

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + CSFC TG    VRNL   EIL QV                    +   G K++N
Sbjct: 112 VGCPVKCSFCATGQDGFVRNLRVSEILNQVYTVER--------------RLNKRGEKLTN 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240
           +V MGMGEPL N + + K+L I S   G+  SKRRIT+STSG VP I R + E++ V LA
Sbjct: 158 LVFMGMGEPLINIEALLKALEILSSEEGICISKRRITISTSGIVPAIERILMEKVPVELA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLH+  N+ R+ ++PIN+ YPLE L      Y   +   R+TFEY+++K  N S  DA 
Sbjct: 218 VSLHSAINEKRDQIIPINKAYPLEDLAAVLGEYQRQTKR-RLTFEYILIKDFNVSEGDAN 276

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDIL 359
            L          +NLIP NP          +K I  F + +K     +  +R  +G DI 
Sbjct: 277 ALADFAHQFDHVVNLIPCNPVADTGLERPSEKKIERFYDYLKNVRKVNVSLRQEKGTDID 336

Query: 360 AACGQLKSLSKR 371
            ACGQL+   ++
Sbjct: 337 GACGQLRQNQRK 348


>gi|297837501|ref|XP_002886632.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332473|gb|EFH62891.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 458

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/380 (37%), Positives = 212/380 (55%), Gaps = 29/380 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRH 62
           +K  L GM    L+E +   G       M    +WK +Y   I   +   +  ++++++ 
Sbjct: 93  QKVILKGMTYAALQEWVQSHGFRPGQALM----LWKRLYKDNIWANNVDELEGLNKDLKR 148

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121
           ++++H         D + + DGTRK L       +     IETV IP ++ R T+CVSSQ
Sbjct: 149 MISEHAEFGALSFKDIRSASDGTRKILFTLDDGLV-----IETVVIPCDRGRTTVCVSSQ 203

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC++ C FCYTG   L RNLT  EI+ Q + AR LL    G               I+N
Sbjct: 204 VGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVGS--------------ITN 249

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           +V MGMGEP  N DNV K+ +I  D  GL FS R++T+STSG VP + R   E    LA+
Sbjct: 250 VVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAV 309

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SL+A ++++RN ++PINRKY L +L++  R      +  ++ FEYVML G+NDS  DA  
Sbjct: 310 SLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSKHKYKVLFEYVMLAGVNDSMDDARR 369

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++++GIP KINLI FNP  G +++ +++  ++ F   +   G +  +R  RG D +AA
Sbjct: 370 LVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAA 429

Query: 362 CGQL---KSLSKRIPKVPRQ 378
           CGQL    ++   + +VP Q
Sbjct: 430 CGQLGMIGAVQAPVMRVPEQ 449


>gi|295106390|emb|CBL03933.1| 23S rRNA m(2)A-2503 methyltransferase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 349

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 186/366 (50%), Gaps = 29/366 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + +       L++ +  +G P      R  Q+++W+Y+  +  +  M+++ Q +R  L+ 
Sbjct: 9   KPIKTYSLNNLKQLMKDLGQPS----FRAKQLYEWLYLHHVGSYDEMTNLPQTLRVQLSA 64

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCS 125
            + +  P ++D + S DGT K+++ +          +ETV IP    R T+C S+Q GC+
Sbjct: 65  DYPLFTPAVIDSQTSQDGTAKYVISYHD-----GARVETVAIPSSDGRLTVCCSTQAGCA 119

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TG +   RNL+A EI+ Q+L+A++ +G+                 ++SN+V+M
Sbjct: 120 MGCTFCATGKEGFTRNLSAGEIVDQILIAQTRMGE-----------------RVSNVVVM 162

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244
           G GEP  N++    +L I +D   L+   R ITLST G +  I R+G E     LA+SLH
Sbjct: 163 GQGEPFLNYEQTLNALHILNDEKLLNIGARHITLSTCGILSGIDRLGTEPEQFTLAVSLH 222

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A     R+ ++P    Y L  L      Y   +N  R T EY M+  +ND+  D   LI+
Sbjct: 223 AAIQRTRDKIMPGVANYGLGKLKTVLLKYIERTNR-RATLEYAMMNRVNDNEEDLKALIE 281

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
              G+   +NLIP N     E+  S    +  +   + RSG  + IR  RG DI  ACGQ
Sbjct: 282 FCTGLLCHVNLIPLNEIEESEFSPSKAPTMNHWYLTLNRSGIETTIRHSRGSDIAGACGQ 341

Query: 365 LKSLSK 370
           LK+  K
Sbjct: 342 LKNAVK 347


>gi|294101228|ref|YP_003553086.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM
           12261]
 gi|293616208|gb|ADE56362.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM
           12261]
          Length = 347

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/366 (35%), Positives = 191/366 (52%), Gaps = 28/366 (7%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           + M  +E  E   +        R RT QI +WIY + + +   M+++ +++R  L     
Sbjct: 8   LEMNYDEWLEFCTE---KLGLQRYRTDQICQWIYEKKVFNIYDMTNLGKDLREDLAYKIL 64

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           I+ P +V ++ S DGTRK+L +           IE+V +   +  T C+SSQVGC L C+
Sbjct: 65  ILPPSLVKQETSKDGTRKFLWQLQD-----GQRIESVLLSHGNHNTACISSQVGCPLACA 119

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG    VRNLT  EI+ Q L      G                   I+NIV MGMGE
Sbjct: 120 FCATGKGGFVRNLTPGEIVGQFLAMEKAAGQ-----------------NITNIVFMGMGE 162

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSN 248
           PL N + + KS+ I +         R +T+ST+G VP I  + E EI V L++SLH  ++
Sbjct: 163 PLLNQEALFKSIKILNHPKMRGLGARHMTISTAGIVPGIRALTELEIPVRLSVSLHGTND 222

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
            LRN L+PIN++YPL  LI+A R Y   +   R+T EYVM+  +ND+   A  L  ++ G
Sbjct: 223 MLRNKLMPINQQYPLGSLIEALRDYQQKT-GDRVTIEYVMIDRVNDNTEQAYELAALMNG 281

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +   +NLIP+NP     Y  S Q+ I  F + +        IR  +G DI AACGQL+  
Sbjct: 282 LSIYVNLIPYNPVDAT-YRRSSQERIKAFGKILSELNIEYEIRREKGSDINAACGQLRRQ 340

Query: 369 SKRIPK 374
           +++  +
Sbjct: 341 NEKSSR 346


>gi|296329385|ref|ZP_06871885.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153505|gb|EFG94323.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 358

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/376 (34%), Positives = 199/376 (52%), Gaps = 33/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +++ + +EEL E L+ +G+     +    +++ W++ +  R F  M+++S + R +L
Sbjct: 4   EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKDREIL 59

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117
            +   I +  ++  ++S  D T K+L             IETV +  K       R TLC
Sbjct: 60  KEKTYIPFFNLLKYQVSKIDKTEKFLFELEDGGT-----IETVLLRHKDSKNKEIRNTLC 114

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC + CSFC TG    +RNL+  EIL Q+                    +   G 
Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVER--------------RLRKKGE 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIG 236
            ++N+V MGMGEPL N DN+ K+LSI S+  G++ SKR+IT+STSG V  I + + ++I 
Sbjct: 161 NLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LAISLH+  N+ R+ ++PIN+ +PLE L      Y   +   RITFEY+++   N S 
Sbjct: 221 IELAISLHSAINEKRDKIIPINKNFPLEDLSAVLIEYQKQTKR-RITFEYILIDNFNISE 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
            DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R  +G
Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGAEHTRPSVKKINKFYNYLKNVRKVNVTLRQEKG 339

Query: 356 LDILAACGQLKSLSKR 371
            DI  ACGQL+  +K+
Sbjct: 340 SDIDGACGQLRQRNKK 355


>gi|227549023|ref|ZP_03979072.1| possible Fe-S-cluster redox protein [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078877|gb|EEI16840.1| possible Fe-S-cluster redox protein [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 367

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 185/374 (49%), Gaps = 31/374 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +  +    + +EE  EAL ++G+P    + R  QI +  Y +   D   M+D+ +  R L
Sbjct: 16  MPPKHFADLSKEERIEALAELGLP----KFRADQIARHYYGKFQADPLTMTDLPESQRQL 71

Query: 64  LNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +    F  +  EI   +     T K L R     +     +E+V +    R TLC+SSQ 
Sbjct: 72  VKDALFPTLLTEIRSLETDEGDTTKTLWRLHDGIL-----LESVLMRYPDRATLCISSQA 126

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A                 + + G ++SNI
Sbjct: 127 GCGMACPFCATGQGGLDRNLSTAEIVDQVRAAA--------------ARMHAEGSRLSNI 172

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N++ V  ++   +     G   S+R +T+ST G  P I ++ +E +   L
Sbjct: 173 VFMGMGEPLANYNRVVSAVRQITQPTPDGFGISQRNVTVSTVGLAPQIRKLADEGLSCTL 232

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ +  +++A  +Y   +   R++ EY +++ IND    A
Sbjct: 233 AVSLHTPDDELRDELVPMNNRFSVADVLEAASYYAEQTGR-RVSIEYALIRDINDHDFRA 291

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L + L    G    +NLIP NP PG ++  S +     F   +   G +  +R  +G 
Sbjct: 292 DMLGRKLHDALGSKVHVNLIPLNPTPGSKWDASPRARQDEFVRRVIAQGVTCTVRDTKGQ 351

Query: 357 DILAACGQLKSLSK 370
           +I AACGQL +  K
Sbjct: 352 EIAAACGQLAAEEK 365


>gi|322380339|ref|ZP_08054550.1| Fe-S cluster redox enzyme [Helicobacter suis HS5]
 gi|321147246|gb|EFX41935.1| Fe-S cluster redox enzyme [Helicobacter suis HS5]
          Length = 383

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 199/378 (52%), Gaps = 38/378 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +SL  +  EEL+                  QI+ W+Y R    F  M ++ + ++  L +
Sbjct: 25  QSLYNLTFEELQTYAADH----HFKPFVAKQIFAWLYQRYATSFDQMHNLPKSLKTTLQR 80

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR------------- 113
            F I   +++ ++ S D + K L     +        E+V++  K +             
Sbjct: 81  DFCIQNLKLLVKECSQDKSEKCLFATHDQ-----HSFESVFMVMKEKQIGDKGQILAQEK 135

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T C+SSQ+GC + C FC T     VRNL A EI+ QV+  + +    P           
Sbjct: 136 LTFCLSSQIGCKVGCVFCATAKGGFVRNLKAGEIVEQVVALKRMHSLEPTKG-------- 187

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
                  N+V MGMGEPL NF+ V +SL I S   GL+ S RRITLSTSG VP +  +G 
Sbjct: 188 ------INLVFMGMGEPLHNFEQVVRSLKILSHPHGLNISPRRITLSTSGVVPMMDILGA 241

Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV LAISLHAV+++LR+ L+PIN+ Y ++ LI A R +P +   +R+ FEY+++K  
Sbjct: 242 LNLGVQLAISLHAVNDELRSKLMPINKTYNIQELIKAARRFP-IDARKRLMFEYLVIKDY 300

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+++L G+ +KINLIP+NP    ++   D + +  F++ + + G    +R 
Sbjct: 301 NDGLEHAKALLRLLNGLRSKINLIPYNPTTHSKFERPDLEKVKQFADFLNQRGLLCTMRL 360

Query: 353 PRGLDILAACGQLKSLSK 370
            +GLDI AACGQL+  ++
Sbjct: 361 SKGLDISAACGQLREKTR 378


>gi|251791823|ref|YP_003006543.1| Cfr family radical SAM protein [Aggregatibacter aphrophilus NJ8700]
 gi|247533210|gb|ACS96456.1| radical SAM enzyme, Cfr family [Aggregatibacter aphrophilus NJ8700]
          Length = 311

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 136/315 (43%), Positives = 183/315 (58%), Gaps = 19/315 (6%)

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             I  PE+  E+ S DGT KW ++          ++ETVYIPE  R TLCVSSQVGC+L 
Sbjct: 2   AEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQVGCALA 55

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VMMGM
Sbjct: 56  CTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVMMGM 105

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           GEPL N  NV  ++ I  D      SKRR+TLSTSG VP +  + + I V LAISLHA +
Sbjct: 106 GEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPN 165

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKI 305
           ++LR+ +VP+N+KY ++ LID+   Y  +SNA   ++T EYVML  +ND    A  L ++
Sbjct: 166 DELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVEHAHQLAEV 225

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LK  P KINLIP+NP+P   Y  S    I  F + +   G +  +R  RG DI AACGQL
Sbjct: 226 LKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQL 285

Query: 366 KSLS-KRIPKVPRQE 379
                 R  +  +++
Sbjct: 286 AGDVIDRTKRTAQKK 300


>gi|312879541|ref|ZP_07739341.1| 23S rRNA m(2)A-2503 methyltransferase [Aminomonas paucivorans DSM
           12260]
 gi|310782832|gb|EFQ23230.1| 23S rRNA m(2)A-2503 methyltransferase [Aminomonas paucivorans DSM
           12260]
          Length = 635

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 132/363 (36%), Positives = 188/363 (51%), Gaps = 30/363 (8%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           +    E   E L ++G P    R R  QI KWIY + +  F+ M+D+S E+R  L   +S
Sbjct: 6   LDWSYETWVERLAELGQP----RFRADQICKWIYRKRVFRFEDMTDLSLELREKLQALWS 61

Query: 70  IIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
              PE+  E++S  DGTRK L R      G    +E+V + ++ R T C+S+QVGC L C
Sbjct: 62  CGIPEVAAEQVSRKDGTRKLLWRL-----GDGQSVESVLLDQEGRRTACISTQVGCPLGC 116

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
           +FC TG    VRNL+  EI+ Q L   +  G+  G                  +V MGMG
Sbjct: 117 AFCATGQSGFVRNLSPGEIVGQFLGMEARYGELQG------------------LVTMGMG 158

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EPL N D V  +L             R ITLST G VP I  +    +GV LA+SLHA +
Sbjct: 159 EPLLNADAVFLALGALKHPKMRGLGVRHITLSTCGVVPGIRALAASGLGVRLAVSLHAAN 218

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           + LR+ LVP+N +YPL  L +A   Y  ++   RI+ EY + +G+ND P  A  L + L+
Sbjct: 219 DALRDRLVPLNAQYPLAELREALVDYQEVT-RDRISIEYALFEGVNDDPSQARQLGEYLR 277

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G+   +NLIP N      Y    +  +  F   +++ G+ + +R  RG DI AACGQL+ 
Sbjct: 278 GLSVFVNLIPGNRSLEDAYRRPPRYRVEQFQGILEQQGFETAVRVERGSDIDAACGQLRQ 337

Query: 368 LSK 370
             +
Sbjct: 338 RVE 340


>gi|227833380|ref|YP_002835087.1| hypothetical protein cauri_1556 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184366|ref|ZP_06043787.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454396|gb|ACP33149.1| hypothetical protein cauri_1556 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 368

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 184/374 (49%), Gaps = 31/374 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L  +    +   E  EAL ++G+P    + R  Q+ K  YV    D   M+DI    R  
Sbjct: 16  LPPKHFADLTEAERIEALAELGLP----KFRAKQLAKHYYVHHTADVSEMTDIPAAAREA 71

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           + +       E + +  + DG T K L R     +     +E+V +    R TLC+SSQ 
Sbjct: 72  VQERLFPTLMEPIRQTSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQA 126

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ Q   A  L+ +               G ++SN+
Sbjct: 127 GCGMACPFCATGQGGLDRNLSTAEIVEQFRHAARLMEE--------------EGGRLSNV 172

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V  ++   + S   G   S+R +T+ST G  P I ++ +E +   L
Sbjct: 173 VFMGMGEPLANYKRVVHAVRQITGSELTGFGLSQRNVTVSTVGLAPAIRKLADEDLSCTL 232

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++P+E ++DA ++Y   S   R++ EY +++  ND    A
Sbjct: 233 AVSLHTPDDELRDTLVPVNNRWPVEEVLDAAKYYADKSGR-RVSIEYALIRDKNDQDFRA 291

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L + L    G    +N+IP NP PG E+  + +     F   +   G    +R  +G 
Sbjct: 292 DMLGRKLHAALGSKVHVNVIPLNPTPGSEWDAAPKARQDEFVRRVIAQGVPCTVRDTKGD 351

Query: 357 DILAACGQLKSLSK 370
           +I AACGQL +  +
Sbjct: 352 EIAAACGQLAADER 365


>gi|288922416|ref|ZP_06416604.1| radical SAM enzyme, Cfr family [Frankia sp. EUN1f]
 gi|288346219|gb|EFC80560.1| radical SAM enzyme, Cfr family [Frankia sp. EUN1f]
          Length = 380

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 188/378 (49%), Gaps = 27/378 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR--GIRDFQGMSDISQEVRHLL 64
             L  + R+E       +G+P      R  Q+ +  + R     D   M+D+  +VR  L
Sbjct: 23  RHLADLSRDERRAVAESLGLPA----FRADQLARHYFARHLRAEDAAAMTDLPAQVRATL 78

Query: 65  NQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
                +           CDG  TRK + R          +IE+V +    R T+CVSSQ 
Sbjct: 79  VDSL-LPRLLTAATTADCDGGQTRKTVWRTVD-----GAKIESVLMRYPQRTTVCVSSQA 132

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV+ A            +    +P    ++SN+
Sbjct: 133 GCGMACPFCATGQGGLTRNLSTAEIVEQVVDAAR---------TMTRGGLPGGPGRLSNV 183

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEPL N++ +  +L    +    GL  S R +T+ST G VP I R+  E + V L
Sbjct: 184 VFMGMGEPLANYNALLAALRRLIEPTPDGLGLSARSLTVSTVGLVPGIRRLAGEGLPVTL 243

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LRN LVPIN ++P+  +++A   Y  ++   R++ EY ++ G+NDSP  A
Sbjct: 244 ALSLHAPDDELRNELVPINTRWPVAEVLEAAWDYARITGR-RVSIEYALIDGVNDSPERA 302

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L  +L G  A +NLIP NP  G  +  S  +    F + ++  G ++ +R  RG +I 
Sbjct: 303 DALGALLAGQLAHVNLIPLNPTDGSSWQASAPRGQRVFVDRLRARGVTATVRDTRGREIA 362

Query: 360 AACGQLKSLSKRIPKVPR 377
           AACGQL +      +  R
Sbjct: 363 AACGQLAAEPPARRRTGR 380


>gi|320334270|ref|YP_004170981.1| ribosomal RNA large subunit methyltransferase N [Deinococcus
           maricopensis DSM 21211]
 gi|319755559|gb|ADV67316.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus
           maricopensis DSM 21211]
          Length = 346

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/336 (35%), Positives = 173/336 (51%), Gaps = 22/336 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++ +G   F+ M+++   VR  L   +S+      +   S DG+ K+L   
Sbjct: 17  YRRKQLLQWVFEKGAGRFEDMTNLPANVRAELAASYSLDPFLHTETARSRDGSVKYLFTL 76

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                    ++E VY+P   R T+CVS+ VGC   C+FC TG     RNLTA EI+ QVL
Sbjct: 77  HD-----GKQMEAVYMPYLDRKTVCVSTMVGCPAKCAFCATGAMGFGRNLTAGEIVGQVL 131

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                 G  P              R I ++V MGMGE L N+DNV  +  I    +    
Sbjct: 132 AVARGEGLPP--------------RDIRSLVFMGMGEGLLNYDNVMLASRILLHPLAFDM 177

Query: 213 SKRRITLSTSGFVPNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
           SKRR+TLST G    I ++   +++G+ LAISLHA   + R  ++P   +  +  ++DA 
Sbjct: 178 SKRRVTLSTVGLPKGIRKLAREDDLGIRLAISLHAPDEETRQRIIPTGHRNSIADIMDAA 237

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R Y  ++   RITFEY ML+G+ND    A  L  +L+G+ A +NLIP NPW G  +  S 
Sbjct: 238 REYQDVTGR-RITFEYSMLRGVNDHLWQAEELAGLLRGLVAHVNLIPMNPWEGSGFEEST 296

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +  I  F + +   G    +R  RG D  AACGQL 
Sbjct: 297 EAQIQAFYDVLSARGVEVSVRRSRGRDAGAACGQLA 332


>gi|148243053|ref|YP_001228210.1| Fe-S-cluster redox protein [Synechococcus sp. RCC307]
 gi|205829914|sp|A5GVE8|RLMN_SYNR3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|147851363|emb|CAK28857.1| Predicted Fe-S-cluster redox enzyme [Synechococcus sp. RCC307]
          Length = 346

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 196/374 (52%), Gaps = 38/374 (10%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +  ++L+G+ + +LE      G+P      R  Q+  W+Y +G R +  ++ +   +R  
Sbjct: 1   MALKALLGLSQAQLETWAKDQGLPP----FRGRQLHDWLYAKGARHWHDITVLPAALRQQ 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             +   +     ++  ++ DGT K LL          + +ETV IP + R T+CVSSQVG
Sbjct: 57  --EPLPLGRSNELERHLAQDGTLKLLL-----ATDDGLSLETVGIPTRDRLTVCVSSQVG 109

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG + L R+L   EI+ QVL  R ++                  R+ S++V
Sbjct: 110 CPMACRFCATGKEGLQRSLEPHEIVDQVLTVREVM-----------------QRRPSHVV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIG 236
            MGMGEPL N D+V  ++   S  +G++   R+IT+ST G    + R+ E          
Sbjct: 153 FMGMGEPLLNSDHVLTAIDCLSRDLGMAM--RQITVSTVGVPNTLPRLAELALERLGRAQ 210

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LA+SLHA    LR  L+P  R YP E L++ CRHY  +S   R++FEY++L  +NDSP
Sbjct: 211 FTLAVSLHAPDQALREELIPTARAYPYEQLLEDCRHYVAISGR-RVSFEYILLGNLNDSP 269

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
           R A  L + ++G  + +NLIP+NP    E+   +   +  F+  +K+ G +  +R  RGL
Sbjct: 270 RQAQALAEQVRGFQSHVNLIPYNPIAEEEFQRPEPARVDAFAAALKQRGVAVSVRASRGL 329

Query: 357 DILAACGQLKSLSK 370
           D  AACGQL+   +
Sbjct: 330 DQNAACGQLRRQRQ 343


>gi|318042314|ref|ZP_07974270.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
           CB0101]
          Length = 356

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 122/375 (32%), Positives = 180/375 (48%), Gaps = 42/375 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L+GM    LE+   + G        R  Q+  W+Y +G R    +S + +  R  L  
Sbjct: 3   QPLLGMGLSALEDWAKQHG----QAAFRGRQLHDWLYAKGARQLADVSVLPKGFREQLAA 58

Query: 67  HFS------IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
                    +     +   ++ DGT K LL          + IETV IP + R T+CVSS
Sbjct: 59  QPPDGAFDWMGRSRELHRSVARDGTTKLLL-----GTHDGLSIETVGIPAEGRLTVCVSS 113

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC TG   L R+L   EI+ QVL  R ++   P                 S
Sbjct: 114 QVGCPMACRFCATGKGGLQRSLAVHEIVDQVLSVREVMEQRP-----------------S 156

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE------- 233
           ++V MGMGEPL N + V  ++        L  ++R+IT+ST G    + R+ E       
Sbjct: 157 HVVFMGMGEPLLNIEAVLDAIQCLCTD--LGMAQRQITVSTVGVPRTLPRLAELALERLG 214

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
                LA+SLHA    LR  L+P    YP+E L++ CR Y  ++   R++FEY++L G+N
Sbjct: 215 RAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLEDCRRYVAITGR-RVSFEYILLGGLN 273

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D PR A  L ++L+G  + +NLIP+NP    E+       +  F   ++    +  +R  
Sbjct: 274 DQPRHAAALAQLLRGFQSHVNLIPYNPIEEEEFQRPTPAAVDGFRRALQDRHVAVSVRAS 333

Query: 354 RGLDILAACGQLKSL 368
           RGLD  AACGQL+  
Sbjct: 334 RGLDADAACGQLRRR 348


>gi|326334975|ref|ZP_08201175.1| cfr family radical SAM enzyme [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692780|gb|EGD34719.1| cfr family radical SAM enzyme [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 354

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 204/365 (55%), Gaps = 25/365 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + +  + +EEL+   L  G        R SQ+++W++ +G   F  M+++S+E R LL +
Sbjct: 13  KDIRALKKEELQAFFLAHG----EKAFRASQVYEWLWTKGAHSFDQMTNLSKETRTLLGE 68

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           HF I + ++   + S DGT K  +R         + +E+V IP  +R T C+SSQVGCSL
Sbjct: 69  HFVINHIKVDTMQRSEDGTIKNAVRLHD-----GLYVESVLIPTDTRITACISSQVGCSL 123

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC T   K +RNL+ +EI  QVL              I+        R + NIV MG
Sbjct: 124 NCTFCATARLKRMRNLSPDEIFDQVL-------------TIDQQSRLYYARPLRNIVFMG 170

Query: 187 MGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           MGEPL N+ NV K++   +    GL FS +RIT+STSG    I ++ ++ +   LA+SLH
Sbjct: 171 MGEPLMNYPNVIKAIERITSEKEGLGFSPKRITVSTSGISKLIRKMADDRVKFKLAVSLH 230

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +     RN ++P    +PL  L +A +++   +   RIT+EYV+ KG+ND+ +D   L+ 
Sbjct: 231 SAIEQTRNCIMPWTVNFPLTELREALQYWYQHT-KSRITYEYVVWKGVNDTLKDIEALVA 289

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             +  P K+NLI +NP     +L +D+K ++ + + ++ +G ++ IR  RG DI AACGQ
Sbjct: 290 FCRFAPCKVNLIEYNPIDDGAFLQADEKILLLYKKKLEEAGITTTIRYSRGKDIDAACGQ 349

Query: 365 LKSLS 369
           L +  
Sbjct: 350 LANKQ 354


>gi|303232118|ref|ZP_07318821.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513224|gb|EFL55263.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 348

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 121/370 (32%), Positives = 192/370 (51%), Gaps = 30/370 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    EL+    +     +  + R  Q+  +IY R I  FQ M+   + +R  L+ + 
Sbjct: 4   LLGKSLVELQALFEEH----KIQKFRAKQLIDYIYHRHIFVFQDMTQFPKNLRDWLDSNC 59

Query: 69  SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I  P+++ + +S DG T+K LL            IE V + +    ++CVSSQVGC++ 
Sbjct: 60  IISIPKVITQSVSPDGKTQKLLLELTDHS-----RIEAVLMEQYYGNSVCVSSQVGCAMG 114

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +    L R+L+  EI+ QV+L  +L  +                  I ++V+MG 
Sbjct: 115 CVFCASTQGGLFRDLSVSEIVGQVVLFSALKQED-----------------IHSLVVMGA 157

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N+DNV ++L +  D M    S R++T+ST G+VPNI ++ +E + + LA+SLHA 
Sbjct: 158 GEPLQNYDNVLQALKLIHDPMTFDISYRKMTISTCGWVPNIYKLADEDLPITLALSLHAT 217

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +++ R  ++P+  +Y L+ ++DA ++Y   +   RITFEY+++  IN S  +A  L  I 
Sbjct: 218 TDETRRKIMPVGSRYKLDEVLDAVKYYYEKTQR-RITFEYILIDSINVSLEEAHELGNIG 276

Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           K  P   +NLIP N            K +  F + +   G S  IR   G  I AACGQL
Sbjct: 277 KAFPNCHVNLIPVNGNEHINLYKPSSKHMNIFKDIVASYGVSVTIRKEMGDAIQAACGQL 336

Query: 366 KSLSKRIPKV 375
           K    R  ++
Sbjct: 337 KVAHGRKEEI 346


>gi|260494797|ref|ZP_05814927.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
           3_1_33]
 gi|260197959|gb|EEW95476.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
           3_1_33]
          Length = 358

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 202/380 (53%), Gaps = 34/380 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN  +K +++ + +EEL E L+ +G+     +    +++ W++ +  R F  M+++S + 
Sbjct: 1   MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55

Query: 61  RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113
           R +L +   I +  ++  +IS  D T K+L     +       IETV +  K       R
Sbjct: 56  REILKEKTYIPFFNLLKHQISKIDRTEKFLFELEDKGT-----IETVLLRHKDSKNKEIR 110

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            TLC+SSQVGC + CSFC TG    +RNL+  EIL QV                    + 
Sbjct: 111 NTLCISSQVGCPVKCSFCATGQSGYMRNLSVSEILNQVYTVER--------------RLR 156

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232
             G  ++N+V MGMGEPL N DN+ K+LSI S+  G++ SKR+IT+STSG V  I + + 
Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILL 216

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           ++I + LAISLH+  N+ R+ ++P+N+ +PLE L      Y   +   RITFEY+++   
Sbjct: 217 DKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEYQKQTKR-RITFEYILIDNF 275

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351
           N S  DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R
Sbjct: 276 NISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRRVNVTLR 335

Query: 352 TPRGLDILAACGQLKSLSKR 371
             +G DI  ACGQL+  +K+
Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355


>gi|150006853|ref|YP_001301596.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides
           distasonis ATCC 8503]
 gi|205829794|sp|A6L8G0|RLMN_PARD8 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|149935277|gb|ABR41974.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 343

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/367 (35%), Positives = 182/367 (49%), Gaps = 29/367 (7%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            + K  L+GM  EEL+    ++G+P         Q+  WIY + I     M++I+   R 
Sbjct: 1   MVDKRQLLGMTLEELKGVASEVGLPA----YAAKQMADWIYKKKITRISEMTNIAVAKRA 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LL   F I      + + S DGT K+L        G    +E+VYIP   R TLCVSSQV
Sbjct: 57  LLEDSFEIGAYPPSEYQKSKDGTIKYLY-----AAGPGRFVESVYIPTDDRATLCVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG Q    NLTA +IL Q+                           ++NI
Sbjct: 112 GCKMNCLFCMTGKQGFTANLTANQILNQI-------------------QSLPENDSLTNI 152

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N D + K L I +   G ++S +RIT+ST G    + R  EE    LA+S
Sbjct: 153 VFMGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVS 212

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+     R  L+P+ + +P   +ID  + Y   S+ RR++FEY++ K +NDS + A  L
Sbjct: 213 LHSPYPMERLSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEAL 271

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +L GIP ++NLI F+  P      SD   +  F + +   G    IR  RG DI AAC
Sbjct: 272 SCLLGGIPCRVNLIRFHAIPNVSLETSDIAKMEAFRDFLNAKGVVCTIRASRGEDIFAAC 331

Query: 363 GQLKSLS 369
           G L +  
Sbjct: 332 GMLSTAK 338


>gi|86608506|ref|YP_477268.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123751708|sp|Q2JMN2|RLMN_SYNJB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|86557048|gb|ABD02005.1| radical SAM enzyme, Cfr family [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 352

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 186/371 (50%), Gaps = 36/371 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+G     L++  +  G P      R  Q+  WIY +GIR  + ++   +  R  + Q
Sbjct: 6   IPLLGQSLSALKDWAVAQGQPA----YRGQQLHAWIYQKGIRSLEQVTVFPRAWREAV-Q 60

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            + +    IV    + DGT K+LL      +     IETV IP   R T+CVSSQVGC +
Sbjct: 61  SYPVGRSRIVQRTEARDGTVKFLL-----GLADGQLIETVGIPTAKRLTVCVSSQVGCPM 115

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG     RNL   EIL QVL  +                    GR++S++V MG
Sbjct: 116 ACDFCATGKMGYRRNLELHEILDQVLTVQE-----------------DFGRRVSHVVFMG 158

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
           MGEPL N D V +++   +    +   +R ITLST G    IA + + ++ V LA+SLHA
Sbjct: 159 MGEPLLNRDTVVQAIRSLNQD--IGIGQRHITLSTVGVPRQIAWLAQQDLQVTLAVSLHA 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + DLR  L+P    YPL+ LI  CR Y  L   RR++FEY +L G+ND P  A  L ++
Sbjct: 217 PNQDLRQRLIPSASHYPLDTLIQDCRDY-MLRTGRRVSFEYTLLSGVNDLPIHARQLAQL 275

Query: 306 LK-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           L+     G+   +NLIP+NP    +Y       +  F   +++    + +R  RGLD  A
Sbjct: 276 LQQASRSGVQLHVNLIPYNPISEADYQRPHPTRVREFVRQLEQHQVRATVRQTRGLDGNA 335

Query: 361 ACGQLKSLSKR 371
           ACGQL+    R
Sbjct: 336 ACGQLRGSFLR 346


>gi|256379897|ref|YP_003103557.1| ribosomal RNA large subunit methyltransferase N [Actinosynnema
           mirum DSM 43827]
 gi|255924200|gb|ACU39711.1| radical SAM enzyme, Cfr family [Actinosynnema mirum DSM 43827]
          Length = 368

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/372 (33%), Positives = 186/372 (50%), Gaps = 26/372 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L    L  +  E+  EA+  +G        R +Q+    + R   D   M+DI    R  
Sbjct: 15  LPPRHLADLTAEQRREAVASLG----EQPFRANQLSNHYFGRLTVDPDAMTDIPAAAREK 70

Query: 64  L-NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L       ++ E+   +     TRK LLR     +     +E+V +    R TLC+SSQ 
Sbjct: 71  LVGDLMPPLWTEVRSVEADAGTTRKTLLRAHDGTL-----VESVLMRYPDRATLCISSQA 125

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV    + + D          ++P    ++SNI
Sbjct: 126 GCGMACPFCATGQGGLQRNLSTAEIVDQVRRGAAAMRD---------GLLPGGPGRLSNI 176

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V +++    D    GL  S+R +T+ST G VP I ++ EE + V L
Sbjct: 177 VFMGMGEPLANYKRVIEAVHRICDPAPAGLGISQRSVTVSTVGLVPAIRKLTEENLQVRL 236

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ +  +++A R Y   +   R++ EY +++ IND    A
Sbjct: 237 AVSLHTPDDELRDTLVPVNTRWKVAEVMEAARGYADRTGR-RVSIEYALIRDINDQGWRA 295

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K+L+   G    +NLIP NP PG ++  S +     F   +K  G    +R  RG 
Sbjct: 296 DMLGKLLRRHLGPLVHVNLIPLNPTPGSKWDASPKPVEREFVRRVKEQGVECTVRDTRGQ 355

Query: 357 DILAACGQLKSL 368
           +I AACGQL + 
Sbjct: 356 EIAAACGQLAAE 367


>gi|310828893|ref|YP_003961250.1| hypothetical protein ELI_3325 [Eubacterium limosum KIST612]
 gi|308740627|gb|ADO38287.1| hypothetical protein ELI_3325 [Eubacterium limosum KIST612]
          Length = 340

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/370 (34%), Positives = 195/370 (52%), Gaps = 33/370 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E++ G    E    + + G P      R  Q+++W+Y +        +++S+ +R  L  
Sbjct: 2   ENIFGKTLTECRMLMEEAGEPS----FRGKQLYQWLYEKKAAQLDDCTNLSKNLREKLKS 57

Query: 67  HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           H++I +  I   +    DGTRK+L+R P         IETV +      +LCVSSQVGC 
Sbjct: 58  HYNIEHGSIEKTQEDPEDGTRKYLIRLPD-----GNSIETVLMSYHHGYSLCVSSQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +     +R+L A EIL Q+ L                      G +ISN+V+M
Sbjct: 113 MGCAFCASTKGGKIRDLEAGEILDQIYLVEQ-----------------EAGIRISNVVIM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           G+GEPL N+DN+ K L+IA+   G    +R+ITLST G VP I  + E ++ + LAISLH
Sbjct: 156 GIGEPLDNYDNILKFLNIAN--EGWGIGQRKITLSTCGLVPQIEALAELDLQINLAISLH 213

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +   + R  L+P+ +KY +E L+  C +Y   +   RITFEY ++ G ND P D   L +
Sbjct: 214 SPFQERRETLMPVAKKYRIEELLKVCNNYFTKTKR-RITFEYALIDGFNDRPEDVAELAE 272

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           IL  +P  INLI  NP     Y  S  +++  FS  +K+ G +  IR   G +I AACGQ
Sbjct: 273 ILGKMPCHINLIGLNPVTESAYKGS--RNVNFFSNELKKRGITCTIRRKIGDNIDAACGQ 330

Query: 365 LKSLSKRIPK 374
           L+  +  + +
Sbjct: 331 LRQKADGMKR 340


>gi|322379396|ref|ZP_08053767.1| Predicted Fe-S-cluster redox enzyme [Helicobacter suis HS1]
 gi|321148214|gb|EFX42743.1| Predicted Fe-S-cluster redox enzyme [Helicobacter suis HS1]
          Length = 383

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 199/378 (52%), Gaps = 38/378 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +SL  +  EEL+                  QI+ W+Y R    F  M ++ + ++  L +
Sbjct: 25  QSLYNLTFEELQTYAADH----HFKPFVAKQIFAWLYQRYATSFDQMHNLPKSLKTTLQR 80

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR------------- 113
            F I   +++ ++ S D + K L     +        E+V++  K +             
Sbjct: 81  DFCIQNLKLLVKECSQDKSEKCLFATHDQ-----HSFESVFMVMKEKQIGDKGQILAQEK 135

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T C+SSQ+GC + C FC T     VRNL A EI+ QV+  + +    P           
Sbjct: 136 LTFCLSSQIGCKVGCVFCATAKGGFVRNLKAGEIVEQVVALKRMHSLEPTKG-------- 187

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
                  N+V MGMGEPL NF+ V +SL I S   GL+ S RRITLSTSG VP +  +G 
Sbjct: 188 ------INLVFMGMGEPLHNFEQVVRSLKILSHPHGLNISPRRITLSTSGVVPMMDILGA 241

Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
             +GV LAISLHAV+++LR+ L+PIN+ Y ++ LI A R +P +   +R+ FEY+++K  
Sbjct: 242 LNLGVQLAISLHAVNDELRSKLMPINKTYNIQELIKAARRFP-IDARKRLMFEYLVIKDY 300

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+++L G+ +KINLIP+NP    ++   D + +  F++ + + G    +R 
Sbjct: 301 NDGLEHAKALLRLLNGLRSKINLIPYNPTTHSKFERPDLEKVKQFADFLNQRGLLCTMRL 360

Query: 353 PRGLDILAACGQLKSLSK 370
            +GLDI AACGQL+  ++
Sbjct: 361 SKGLDISAACGQLREKTR 378


>gi|296393255|ref|YP_003658139.1| radical SAM enzyme, Cfr family [Segniliparus rotundus DSM 44985]
 gi|296180402|gb|ADG97308.1| radical SAM enzyme, Cfr family [Segniliparus rotundus DSM 44985]
          Length = 368

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 185/378 (48%), Gaps = 32/378 (8%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             +    L  +   EL +A+  +G        R  Q+ +  Y R   D + M+D+    R
Sbjct: 13  RAMPPRHLADLSAGELRDAVAGLG----EKPFRAGQLARHYYTRLTVDPEAMTDVPAASR 68

Query: 62  HLLNQHFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
             L + F    P++V    +  CD   T K L R     +     +E+V +    R TLC
Sbjct: 69  GALAEAF---LPDLVTPARTMGCDRGETVKTLWRLHDGSL-----VESVLMAYADRVTLC 120

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQ GC + C FC TG   L RNL+  EI+ QV LA     D           +    R
Sbjct: 121 VSSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRLAALAARD---------GKLAGGAR 171

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE- 234
            +SNIV MGMGEPL N+  V  ++   +     G   S+R + +ST G VP I R+  E 
Sbjct: 172 HLSNIVFMGMGEPLANYRRVLDAVRRITSPAPEGFGISQRSVVVSTVGLVPAIHRLANEG 231

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           + V LA+SLHA  ++LR+ LVP+N ++P+  ++ A + Y   +   R++ EY +++ +ND
Sbjct: 232 LSVTLAVSLHAPDDELRDTLVPVNTRWPVAEVLAAAKGYAQQTGR-RVSVEYALIRDVND 290

Query: 295 SPRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
            P  A  L  +L    G  A +NLIP NP PG E+  S  +    F   ++  G S  +R
Sbjct: 291 QPWRADLLGGLLHEALGSLAHVNLIPLNPTPGSEWDASPPEAQREFVRRVRAKGVSCTVR 350

Query: 352 TPRGLDILAACGQLKSLS 369
             RG +I AACGQL   S
Sbjct: 351 DTRGQEIAAACGQLAGSS 368


>gi|282859577|ref|ZP_06268681.1| radical SAM enzyme, Cfr family [Prevotella bivia JCVIHMP010]
 gi|282587628|gb|EFB92829.1| radical SAM enzyme, Cfr family [Prevotella bivia JCVIHMP010]
          Length = 344

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 193/369 (52%), Gaps = 29/369 (7%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            + K  L+G    EL++   ++G+P         Q+ +W+YV+ ++    M++IS+  R 
Sbjct: 2   EINKLPLLGKTLFELKQVAKELGLPA----FAGKQMAEWLYVKHVKSIDEMTNISKANRE 57

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            L   ++I     +D + S DGT K+L             +ETVYIP++ R TLCVSSQV
Sbjct: 58  KLESVYTIGCKAPIDAQHSQDGTIKYLF-----PTERGKFVETVYIPDEDRATLCVSSQV 112

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG Q    +L+A +IL Q+                          K++NI
Sbjct: 113 GCKMNCLFCQTGKQGFEGSLSATDILNQIYSLPERD-------------------KLTNI 153

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MG GEP+ N DNV ++  + +     ++S +RIT+S+ G    + R  +E    +AIS
Sbjct: 154 VFMGQGEPMDNLDNVLRTTELMTAEYAYAWSPKRITVSSVGLKSKLKRFLDESQCHVAIS 213

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           +H+  ++ R  ++P  +   ++ ++D  R+Y   S+ RR++FEY++  G NDS   A  +
Sbjct: 214 MHSPLHEQREEIMPAEKGMRIQEVVDLLRNY-DFSHQRRLSFEYIVFGGKNDSMEYAKAI 272

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           + ++KG+  + NLI F+  P      +D++ +  F + + + G  + IR  RG DI AAC
Sbjct: 273 VDLVKGLDCRFNLIRFHQIPNVPLKGADRETMEKFRDYLTKHGVFTTIRASRGQDIFAAC 332

Query: 363 GQLKSLSKR 371
           G L +  K+
Sbjct: 333 GLLSTAKKQ 341


>gi|256844888|ref|ZP_05550346.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2]
 gi|256718447|gb|EEU32002.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2]
          Length = 358

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 202/380 (53%), Gaps = 34/380 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN  +K +++ + +EEL E L+ +G+     +    +++ W++ +  R F  M+++S + 
Sbjct: 1   MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55

Query: 61  RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113
           R +L +   I +  ++  ++S  D T K+L     +       IETV +  K       R
Sbjct: 56  REILKEKTYIPFFNLLKYQVSKIDKTEKFLFELEDKGT-----IETVLLRHKDSKNREIR 110

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            TLCVSSQVGC + CSFC TG    +RNL+  EIL Q+                    + 
Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVER--------------RLR 156

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232
             G  ++N+V MGMGEPL N DN+ KSLSI S+  G++ SKR+IT+STSG V  I + + 
Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGINISKRKITISTSGVVSGIEKILL 216

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           ++I + LAISLH+  N+ R+ ++P+N+ +PLE L      Y   +   RITFEY+++   
Sbjct: 217 DKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNF 275

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351
           N S  DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R
Sbjct: 276 NISEADANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRKVNVTLR 335

Query: 352 TPRGLDILAACGQLKSLSKR 371
             +G DI  ACGQL+  +K+
Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355


>gi|302039009|ref|YP_003799331.1| ribosomal RNA large subunit methyltransferase N [Candidatus
           Nitrospira defluvii]
 gi|300607073|emb|CBK43406.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
           Nitrospira defluvii]
          Length = 366

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/362 (39%), Positives = 205/362 (56%), Gaps = 28/362 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + +L+ +   E+   +  +G P      R SQI +W+Y    R F  MS++SQ+ R  L 
Sbjct: 13  RTNLLALTESEMAAFVASLGWPA----YRASQILRWLYQERARTFAEMSNLSQKDREYLT 68

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I     V    S DGT+K +L           ++E V IP++ R TLC+S+QVGC+
Sbjct: 69  GSSRIERTSAVQIFSSQDGTKKLVLTL-----ADGNQVECVLIPDEDRLTLCLSTQVGCT 123

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC TGT  L RNL A EI+ QVLLA+  L +               G++++N+V M
Sbjct: 124 LDCGFCLTGTLGLQRNLRAHEIIDQVLLAQDHLQE---------------GQRLTNLVFM 168

Query: 186 GMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           GMGEPL N D V  +++  ++   GL FS RRIT+ST+G    I  V   + V LAISL+
Sbjct: 169 GMGEPLANLDAVADAVTRLTNQTWGLGFSGRRITISTAGLASRIKDVA-PLKVNLAISLN 227

Query: 245 AVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           A ++ LR+ L+P   + + L+ L+ ACR YP L++  R+TFEYV+L  +ND   DA  L+
Sbjct: 228 ATTDALRDQLMPAANRLHSLDALLAACRAYP-LADRDRLTFEYVLLADVNDRTEDAARLV 286

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+L+G+  K+NLI FNP+PG  Y       I TF + ++R      +R  RG D+L ACG
Sbjct: 287 KLLRGLRCKVNLIAFNPFPGNPYRRPSDAAIDTFQDTLRRGHVDVYLRRSRGRDVLGACG 346

Query: 364 QL 365
           QL
Sbjct: 347 QL 348


>gi|110639497|ref|YP_679706.1| hypothetical protein CHU_3124 [Cytophaga hutchinsonii ATCC 33406]
 gi|123354303|sp|Q11QF0|RLMN_CYTH3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|110282178|gb|ABG60364.1| 23S rRNA m(2)A-2503 methyltransferase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 365

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 199/371 (53%), Gaps = 24/371 (6%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             +KK+ +  +  EEL++  +  G        R+ Q+++W++ R  R F+ M+++S+E R
Sbjct: 18  TEIKKKCIRSLSAEELKDFFVASG----EKAFRSRQVYEWLWKRSARSFEQMTNLSKETR 73

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            LL  +FSI    I  +++S DGT K+  +     +     +E V IP   R T C+SSQ
Sbjct: 74  TLLENNFSINPVTISQKQVSTDGTIKFGFKLHDGYL-----VEGVLIPADDRMTACISSQ 128

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGCSLTC FC TG     RNL   EI  QV+L +    +                  ++N
Sbjct: 129 VGCSLTCKFCATGYMDRKRNLEPYEIYDQVVLIKEAAEE-------------HYQTPLTN 175

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           IV+MGMGEPL N+ NV K +   +   GL  + +RITLST+G    I ++G+E +   LA
Sbjct: 176 IVLMGMGEPLLNYTNVLKGIDKVTSEEGLHIASKRITLSTAGIAKMITKLGDEKVKFRLA 235

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA ++  RN ++PIN    L +L ++  H+   + +  +TFEY++  G+ND+ +DA 
Sbjct: 236 LSLHAANDVKRNTIMPINETNNLNVLKESLLHFCKETGSS-VTFEYIVFDGVNDTAQDAK 294

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L    K IP KIN+I +NP    +++ +    +  F + +   G    IR  RG DI A
Sbjct: 295 ELYAFAKNIPCKINIIEYNPIQEADFMNTSVDKLEQFKKVLTDKGIIVNIRRSRGKDIDA 354

Query: 361 ACGQLKSLSKR 371
           ACGQL     +
Sbjct: 355 ACGQLAIKEVK 365


>gi|34763242|ref|ZP_00144204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27887095|gb|EAA24204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 358

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 202/380 (53%), Gaps = 34/380 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN  +K +++ + +EEL E L+ +G+     +    +++ W++ +  R F  M+++S + 
Sbjct: 1   MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55

Query: 61  RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113
           R +L +   I +  ++  ++S  D T K+L             IETV +  K       R
Sbjct: 56  REILKEKTYIPFFNLLKYQVSKIDKTEKFLFELEDGGT-----IETVLLRHKDSKNREIR 110

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            TLCVSSQVGC + CSFC TG    +RNL+  EIL Q+ +                  + 
Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYIVER--------------RLR 156

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232
             G  ++N+V MGMGEPL N DN+ KSLSI S+  G++ SKR+IT+STSG V  I + + 
Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILL 216

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           ++I + LAISLH+  N+ R+ ++P+N+ +PLE L      Y   +   RITFEY+++   
Sbjct: 217 DKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNF 275

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351
           N S  DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R
Sbjct: 276 NISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNIRKVNVTLR 335

Query: 352 TPRGLDILAACGQLKSLSKR 371
             +G DI  ACGQL+  +K+
Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355


>gi|229916075|ref|YP_002884721.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
 gi|229467504|gb|ACQ69276.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
          Length = 353

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/372 (32%), Positives = 206/372 (55%), Gaps = 27/372 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+ G+  ++L     + G           Q+W  +Y+  ++    + ++  EVR  L 
Sbjct: 2   KSSIYGLTFDQLTNECTEAGYGA----FHARQVWDSLYIDRVKSMDDL-NVRDEVRDYLT 56

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + + I   E+  ++ + DGT K+LL+           IETV +  K   ++CV++QVGC+
Sbjct: 57  EKYVISTQELFVKQEAGDGTVKFLLKLHD-----GHYIETVLMRHKYGRSVCVTTQVGCN 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +G  K  R+LTA E++ Q++  +  L +               G ++S+IV+M
Sbjct: 112 IGCSFCASGLLKKTRDLTAGEVVEQIMTVQHFLDE------------EGEGDRVSHIVVM 159

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           G+GEP  NFDN+   L +  D  GL+ + R+I +STSG    I +  + ++ + LA+SLH
Sbjct: 160 GIGEPFDNFDNLVDFLLVVKDERGLAIAPRKINVSTSGLADKIYKFADLDLRINLALSLH 219

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++LR  ++ INR +PL+ L+ + R+Y   +N  RITFEY++L  +ND P  A  L  
Sbjct: 220 APNDELRTRIMKINRAFPLDKLMPSIRYYVEKTNK-RITFEYILLSKVNDLPEHAEELAD 278

Query: 305 ILKGI--PAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +++ I   + +NLIP+NP     +Y  S  +DI+ F + +K+ G ++ +R   G DI AA
Sbjct: 279 LIEDIKDKSYVNLIPYNPVNEHIQYERSTPEDIMAFYDILKKRGVNTGVRLEHGTDIDAA 338

Query: 362 CGQLKSLSKRIP 373
           CGQL+S    + 
Sbjct: 339 CGQLRSKHMNVE 350


>gi|227504805|ref|ZP_03934854.1| possible Fe-S-cluster redox protein [Corynebacterium striatum ATCC
           6940]
 gi|227198655|gb|EEI78703.1| possible Fe-S-cluster redox protein [Corynebacterium striatum ATCC
           6940]
          Length = 372

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 187/374 (50%), Gaps = 31/374 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L  +    + ++E    L ++G+P    + R +Q+ K  YV    D + M+DI    R  
Sbjct: 20  LPPKHFADLTQDERIAVLAELGLP----KFRANQLAKHYYVHRTADVEEMTDIPANKRAE 75

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L +       E + +  + DG T K L R     +     +E+V +    R TLC+SSQ 
Sbjct: 76  LQERLFPNLMEPIRQTSTDDGETTKSLWRLHDGTM-----LESVLMRYPGRATLCISSQA 130

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ Q  LA  L+ D               G +++N+
Sbjct: 131 GCGMACPFCATGQGGLDRNLSTAEIVEQFRLAAKLMED--------------EGGRLTNV 176

Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V  ++   +  D  G   S+R +T+ST G  P I ++ +E +   L
Sbjct: 177 VFMGMGEPLANYKRVVHAVRQITGQDLEGFGLSQRNVTVSTVGLAPAIRKLADEDLSCTL 236

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++P+E ++DA R+Y   S   R++ EY +++  ND    A
Sbjct: 237 AVSLHTPDDELRDSLVPVNNRWPVEEVLDAARYYADKSGR-RVSIEYALIRDKNDQDFRA 295

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L + L    G    +N+IP NP PG E+  + +     F   +   G    +R  +G 
Sbjct: 296 DMLGQKLHRALGSKVHVNVIPLNPTPGSEWDAAPKARQDEFVRRVIAQGVPCTVRDTKGD 355

Query: 357 DILAACGQLKSLSK 370
           +I AACGQL +  +
Sbjct: 356 EIAAACGQLAADER 369


>gi|291166481|gb|EFE28527.1| radical SAM enzyme, Cfr family [Filifactor alocis ATCC 35896]
          Length = 345

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 124/362 (34%), Positives = 191/362 (52%), Gaps = 30/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  M   E+EE +L +G      + R  QI+ ++  +G+     M  +S++ R  L +
Sbjct: 3   VDLRSMEYYEVEEVVLNLG----EKKYRAKQIYNFL-AKGVSSIDEMYTLSKDFREKLKE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            + I   +I  +  S  DGTRK+L+       G    IETV +  K+  ++C+S+QVGC 
Sbjct: 58  RYYICKTDIYHKLESNLDGTRKYLIEL-----GDGNLIETVLMIYKNGPSICLSTQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +    LVRNLT  EI+ Q++  +  LG+                 +I+NIV+M
Sbjct: 113 MGCKFCASTVDGLVRNLTPGEIIGQMITVQKDLGE-----------------RIANIVIM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEP  NFDN+ K L +  +  GL    R IT+ST G VP I  + +  I + LAISLH
Sbjct: 156 GSGEPFDNFDNLVKFLKLVHEDYGLQIGYRHITISTCGLVPKIREMEKLGIPINLAISLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            V  + R  ++PI + Y +E LI+A +HY  ++   R+T+EY +++G+ DS  +A  L  
Sbjct: 216 QVEQNKREEIMPIAKVYDIEELIEAGKHYANVTKR-RVTYEYALIEGVTDSLEEAHKLGS 274

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG  + INLIP NP     +   + K +  F + +      + +R   G DI  ACGQ
Sbjct: 275 LLKGSLSLINLIPINPIKEKSFKKPNLKRVQAFQKVLLNYHIITTVRRELGSDINGACGQ 334

Query: 365 LK 366
           L+
Sbjct: 335 LR 336


>gi|124022151|ref|YP_001016458.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
           marinus str. MIT 9303]
 gi|205829805|sp|A2C6T3|RLMN_PROM3 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123962437|gb|ABM77193.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
           MIT 9303]
          Length = 356

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 185/368 (50%), Gaps = 37/368 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+G    ELE   +  G P      R  Q+  W+Y +G R F  ++ + +  R  L Q
Sbjct: 11  QALLGCSATELESWAVAEGQPA----FRGRQLHDWLYAKGARSFDAITVLPKSWRISLQQ 66

Query: 67  H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              +I     V+  ++ D T K LL            IE+V IP + R T+C+SSQVGC 
Sbjct: 67  RGLTIGRLLEVNRAVAVDDTTKLLL-----ATVDGETIESVGIPTQQRLTVCLSSQVGCP 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +G   L R+L   EI+ QVL  R  +                  R+ S++V M
Sbjct: 122 MACRFCASGKGGLQRSLATHEIVDQVLSLREAM-----------------DRRPSHVVFM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVM 238
           GMGEPL N + V  S+   +    L  ++RRIT+ST G    + ++ E            
Sbjct: 165 GMGEPLLNIEAVLASIRCLNID--LGIAQRRITVSTVGVPHTLPQLAELAMKRLGRAQFT 222

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA + +LR  L+P    YP E L+  CRHY  ++   R+TFEY++L  +ND P+ 
Sbjct: 223 LAVSLHAPNQELRERLIPTACAYPFETLLQDCRHYLAVTGR-RVTFEYILLGALNDQPQH 281

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L + ++G  + +NLI +NP     +   + + I  F   +++ G +  +R  RGLD 
Sbjct: 282 AEELAERVRGFQSHVNLIAYNPIDDEGFQRPNPETIEAFRRVLEQRGVAVSLRASRGLDQ 341

Query: 359 LAACGQLK 366
            AACGQL+
Sbjct: 342 NAACGQLR 349


>gi|262384399|ref|ZP_06077534.1| cfr family radical SAM enzyme [Bacteroides sp. 2_1_33B]
 gi|301308675|ref|ZP_07214627.1| radical SAM enzyme, Cfr family [Bacteroides sp. 20_3]
 gi|262294102|gb|EEY82035.1| cfr family radical SAM enzyme [Bacteroides sp. 2_1_33B]
 gi|300833199|gb|EFK63817.1| radical SAM enzyme, Cfr family [Bacteroides sp. 20_3]
          Length = 343

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/367 (35%), Positives = 182/367 (49%), Gaps = 29/367 (7%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            + K  L+GM  EEL+    ++G+P         Q+  WIY + I     M++I+   R 
Sbjct: 1   MVDKRQLLGMTLEELKGVASEVGLPA----YAAKQMADWIYKKKITRISEMTNIAVAKRA 56

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LL   F I      + + S DGT K+L        G    +E+VYIP   R TLCVSSQV
Sbjct: 57  LLEDSFEIGAYPPSEYQKSKDGTIKYLY-----AAGPGRFVESVYIPTDDRATLCVSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG Q    NLTA +IL Q+                           ++NI
Sbjct: 112 GCKMNCLFCMTGKQGFTANLTANQILNQI-------------------QSLPENDSLTNI 152

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEPL N D + K L I +   G ++S +RIT+ST G    + R  EE    LA+S
Sbjct: 153 VFMGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVS 212

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH+     R  L+P+ + +P   +ID  + Y   S+ RR++FEY++ K +NDS + A  L
Sbjct: 213 LHSPYPMERLSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEAL 271

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +L GIP ++NLI F+  P      SD   +  F + +   G    IR  RG DI AAC
Sbjct: 272 SCLLGGIPCRVNLIRFHAIPNVSLETSDIVKMEAFRDFLNAKGVVCTIRASRGEDIFAAC 331

Query: 363 GQLKSLS 369
           G L +  
Sbjct: 332 GMLSTAK 338


>gi|323358368|ref|YP_004224764.1| Fe-S-cluster redox enzyme [Microbacterium testaceum StLB037]
 gi|323274739|dbj|BAJ74884.1| predicted Fe-S-cluster redox enzyme [Microbacterium testaceum
           StLB037]
          Length = 442

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 182/372 (48%), Gaps = 18/372 (4%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  M   E  E + ++G+P      R  Q+ K  +     D   M+D+    R  L  
Sbjct: 70  VHLADMTAAERVEKVKELGLPG----FRAKQLEKHYFTHYTSDPAEMTDLPASGREELVA 125

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                    V    +  G T K+L +     +     +E+V +    R TLCVSSQ GC 
Sbjct: 126 GMLPPLLTEVRRLETDRGDTIKFLWKLHDGAL-----VESVLMRYPGRITLCVSSQAGCG 180

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIV 183
           + C FC TG   L RN++A EI+ Q++ A +L+  G   G    +      V  ++SNIV
Sbjct: 181 MNCPFCATGQAGLTRNMSAAEIIEQIVRANALIAAGGLGGKTLRQAQGPGQVPERVSNIV 240

Query: 184 MMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
            MGMGEPL N+  V +++ +  D   GL  S R IT+ST G VP I ++ +E I V  A+
Sbjct: 241 FMGMGEPLANYARVMQAVRVMVDKDHGLGMSARGITVSTVGLVPAIKKLADEDIPVTFAL 300

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  + LR+ L+P+N ++ ++  +DA R Y   +   R++ EY ++K +ND    A  
Sbjct: 301 SLHAPDDGLRDELIPVNSRWKVDEALDAARAYFDKTGR-RVSIEYALIKDMNDHAWRADL 359

Query: 302 LIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L   L  +G     +N IP NP PG  +  S+      F   +  +G  + +R  RG +I
Sbjct: 360 LADKLNARGRGWVHVNPIPLNPTPGSIWTASEVPVQNEFVRRLNDAGIPTTLRDTRGKEI 419

Query: 359 LAACGQLKSLSK 370
             ACGQL +  +
Sbjct: 420 DGACGQLVATEE 431


>gi|242058145|ref|XP_002458218.1| hypothetical protein SORBIDRAFT_03g029230 [Sorghum bicolor]
 gi|241930193|gb|EES03338.1| hypothetical protein SORBIDRAFT_03g029230 [Sorghum bicolor]
          Length = 407

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/363 (38%), Positives = 201/363 (55%), Gaps = 26/363 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHL 63
           K  L GM   ELE  +   G       M    +WK +Y   +    +  ++ ++++ R +
Sbjct: 47  KAMLKGMDYSELENWVQAQGFRPGQAMM----LWKCLYGNNVWAHCYDELTGLNKDFRKM 102

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122
           + +H  +    + D   + DGTRK L       +     IETV IP  + R T+CVSSQV
Sbjct: 103 ITEHADLKALTVKDIHTASDGTRKILFSLEDGSV-----IETVIIPCARGRTTVCVSSQV 157

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C FC+TG   L ++L+  EI+ Q + AR L  D  G               I+N+
Sbjct: 158 GCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFGS--------------INNV 203

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEP  N DNV K+ +I  D  GL FS R++T+STSG VP + R  +E    LA+S
Sbjct: 204 VFMGMGEPFHNIDNVIKASAIMVDGQGLQFSPRKVTVSTSGLVPQLKRFLQESNCSLAVS 263

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+A ++++RN ++PINRKY L +L+   R    L   + + FEYVML G+NDS  DA  L
Sbjct: 264 LNATTDEVRNWIMPINRKYNLNLLLGTLREELNLRKKQIVLFEYVMLSGVNDSMDDAKRL 323

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           I++++GIP KINLI FNP  G ++  +    I+ F   + + G +  +R  RG D +AAC
Sbjct: 324 IELVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLTVFVRLSRGDDQMAAC 383

Query: 363 GQL 365
           GQL
Sbjct: 384 GQL 386


>gi|19703861|ref|NP_603423.1| florfenicol resistance protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|81590892|sp|Q8RFZ9|RLMN_FUSNN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|19714019|gb|AAL94722.1| Florfenicol resistance protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 358

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/376 (34%), Positives = 199/376 (52%), Gaps = 33/376 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +++ + +EEL E L+ +G+     +    +++ W++ +  R F  M+++S + R +L
Sbjct: 4   EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKDREIL 59

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117
            +   I +  ++  ++S  D T K+L             IETV +  K       R TLC
Sbjct: 60  KEKTYIPFFNLLKYQVSKIDKTEKFLFELEDGGT-----IETVLLRHKDSKNKEIRNTLC 114

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VSSQVGC + CSFC TG    +RNL+  EIL Q+                    +   G 
Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVER--------------RLRKKGE 160

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIG 236
            ++N+V MGMGEPL N DN+ K+LSI S+  G++ SKR+IT+STSG V  I + + ++I 
Sbjct: 161 NLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LAISLH+  N+ R+ ++PIN+ +PLE L      Y   +   RITFEY+++   N S 
Sbjct: 221 IELAISLHSAINEKRDKIIPINKNFPLEDLSAVLIEYQKQTKR-RITFEYILIDNFNISE 279

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
            DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R  +G
Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGAEHTRPSVKKINKFYIYLKNVRKVNVTLRQEKG 339

Query: 356 LDILAACGQLKSLSKR 371
            DI  ACGQL+  +K+
Sbjct: 340 SDIDGACGQLRQRNKK 355


>gi|313891997|ref|ZP_07825598.1| 23S rRNA m2A2503 methyltransferase [Dialister microaerophilus UPII
           345-E]
 gi|313119640|gb|EFR42831.1| 23S rRNA m2A2503 methyltransferase [Dialister microaerophilus UPII
           345-E]
          Length = 344

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 194/363 (53%), Gaps = 29/363 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            + G   +ELEE +     P    + R  QI  ++Y R I  F  M  + + +R  L ++
Sbjct: 4   DIWGKSLKELEEYITLNNFP----KFRAKQIHDYLYHRCIFTFDEMKQLPKNMREWLKEN 59

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            SI  PE+++   S DG T K L +     +      ETV +  K   ++CVS+Q+GC++
Sbjct: 60  ASIYIPEVINSIQSNDGNTTKILFKLKDGSLA-----ETVCMHHKYGNSICVSTQIGCAM 114

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +    L RNLT  E+L QV   + L                     + +IV+MG
Sbjct: 115 GCIFCASTRNGLERNLTFGEMLSQVYAFKKLK-----------------NISVHSIVLMG 157

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHA 245
            GEPL N++N  K + + +DS  L+ S R ITLST G VP I R+  E + + LAISLHA
Sbjct: 158 AGEPLTNYENCLKFIKLCNDSSILNISYRNITLSTCGIVPQIYRLEKENLPITLAISLHA 217

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +RN ++P ++ + +E +I A +HY   +   RITFEY+++KGIN +P  A+ L K+
Sbjct: 218 PNDKIRNEILPSSKHFKIEDVIRASKHYFENTGR-RITFEYILIKGINAAPEHAVELAKL 276

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +  +   INLIP N     +     +K+I  F + +++ G S+ +R   G +I AACGQL
Sbjct: 277 VGNLNCHINLIPVNGTEHIQLFAPSKKEIFEFQQILEKMGKSATVRRQMGNEIQAACGQL 336

Query: 366 KSL 368
           K  
Sbjct: 337 KRR 339


>gi|54026096|ref|YP_120338.1| ribosomal RNA large subunit methyltransferase N [Nocardia farcinica
           IFM 10152]
 gi|81373742|sp|Q5YS67|RLMN_NOCFA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|54017604|dbj|BAD58974.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 369

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 186/373 (49%), Gaps = 26/373 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +    L  +  E+   A+ ++G+P    + R  QI +  Y R   D   M+D+   VR  
Sbjct: 16  MPPRHLADLDAEQRRAAVAELGLP----KFRADQIARQYYGRLEADPARMTDLPAPVREQ 71

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +         ++V      DG TRK L R      G    +E+V +    R TLC+SSQ 
Sbjct: 72  IGAALFPRLLDVVKHVACDDGRTRKTLWR-----AGDGTLLESVLMRYADRNTLCISSQA 126

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A + L D           +     ++SNI
Sbjct: 127 GCGMACPFCATGQGGLNRNLSTAEIVDQVRAAAAALRD---------GAVAGGPGRLSNI 177

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V  ++   +     GL  S+R + +ST G  P I ++ +E + V L
Sbjct: 178 VFMGMGEPLANYKRVVAAVRRITAPAPDGLGISQRNVVVSTVGLAPAIRKLADEGLSVTL 237

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++P+  ++DA R+Y   +  RR++ EY +++ IND P  A
Sbjct: 238 AVSLHTPDDELRDTLVPVNNRWPVAEVLDAARYYAD-TTGRRVSVEYALIRDINDQPWRA 296

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L   L    G    +N+IP NP PG ++  S +     F   +   G    +R  RG 
Sbjct: 297 DMLGAKLHKALGSRVHVNVIPLNPTPGSKWDASPKPVEREFVRRVNEQGVPCTVRDTRGQ 356

Query: 357 DILAACGQLKSLS 369
           +I AACGQL + +
Sbjct: 357 EIAAACGQLAAEN 369


>gi|328475785|gb|EGF46521.1| ribosomal RNA large subunit methyltransferase N [Listeria
           monocytogenes 220]
          Length = 357

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 119/344 (34%), Positives = 197/344 (57%), Gaps = 26/344 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +   E    + S DGT K+L +     +     IETV + ++   ++CV++QVG
Sbjct: 57  LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +              +   ++  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LAIS
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR  ++ IN+ Y +E L++A  +Y   +N  RITFEY+MLKG+ND  ++AL L
Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278

Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKR 343
             +L      A +NLIP+NP     +Y  S ++D++ F + +K+
Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKK 322


>gi|257464159|ref|ZP_05628540.1| florfenicol resistance protein [Fusobacterium sp. D12]
 gi|317061675|ref|ZP_07926160.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
 gi|313687351|gb|EFS24186.1| radical SAM domain-containing protein [Fusobacterium sp. D12]
          Length = 349

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 195/372 (52%), Gaps = 28/372 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K +L+ + ++EL E L+  G+     +    +++ W++ +  R+ Q M+++S + R +
Sbjct: 1   MEKRNLLDLNQQELTELLVAEGM----KKFYGKEVFLWLHKKFARNIQEMTNLSLKHREI 56

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQ 121
           L +   I Y  ++  ++S  D T K+L +           IETV +  +  R TLC+SSQ
Sbjct: 57  LEEKTYIPYLNLLKHQVSKIDKTEKFLFQLED-----GNTIETVLLRHRDQRNTLCISSQ 111

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C+FC TG    VRNL   EIL QV                    +   G K++N
Sbjct: 112 VGCPVKCTFCATGQDGFVRNLRVSEILNQVYTIER--------------RLNKRGEKLTN 157

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240
           +V MGMGEPL N D + K+L I S   G+  SKR+IT+STSG VP I R + E+  V LA
Sbjct: 158 LVFMGMGEPLINMDALMKALEILSCEEGICISKRKITISTSGIVPAIERILMEKTPVELA 217

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLH+  N+ R+ ++PIN+ YPLE L      Y   +   R+TFEY+++K  N S  DA 
Sbjct: 218 ISLHSAINEKRDRIIPINKAYPLEDLSAVLLEYQRQTKR-RLTFEYILIKDFNVSEGDAN 276

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDIL 359
            L          +NLIP NP          +K I  F E +K     +  +R  +G DI 
Sbjct: 277 ALADFAHQFDHIVNLIPCNPVSETGLERPSEKKIERFYEYLKNVRKVNVSLRQEKGTDID 336

Query: 360 AACGQLKSLSKR 371
            ACGQL+   ++
Sbjct: 337 GACGQLRQNQRK 348


>gi|225424671|ref|XP_002262749.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296086557|emb|CBI32146.3| unnamed protein product [Vitis vinifera]
          Length = 439

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 135/363 (37%), Positives = 196/363 (53%), Gaps = 26/363 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHL 63
           K  L GM   EL+  +   G       M    +WK +Y   I       +  ++++ + +
Sbjct: 78  KVLLKGMRYFELQNWVQSHGYRPGQALM----LWKRLYGNNIWAHCIDELEGLNKDFKSM 133

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122
           L++H       + D   + DGTRK L       +     IETV IP ++ R T+CVSSQV
Sbjct: 134 LSEHAEFKALTLKDSIKASDGTRKILFTLDDGLV-----IETVIIPCDRGRNTVCVSSQV 188

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C FCYTG   L R+LTA EI+ Q + AR L     G               I+N+
Sbjct: 189 GCAMNCQFCYTGRMGLTRHLTAAEIVEQAVYARRLFSSEVGS--------------ITNV 234

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEP  N ++V K+  I     GL FS R++T+STSG VP +     E    LA+S
Sbjct: 235 VFMGMGEPFHNIESVIKAADIMVHDQGLHFSPRKVTVSTSGLVPQLKHFLRESNCALAVS 294

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+A ++++RN ++PINRKY L +L+   R      +  ++ FEYVML G+NDS  DA  L
Sbjct: 295 LNATTDEVRNWVMPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVNDSLEDARRL 354

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           I +++GIP K+NLI FNP  G ++  + ++ I+ F   +  +G    +R  RG D +AAC
Sbjct: 355 IDLVQGIPCKVNLISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPSRGDDQMAAC 414

Query: 363 GQL 365
           GQL
Sbjct: 415 GQL 417


>gi|237745020|ref|ZP_04575501.1| radical SAM family enzyme [Fusobacterium sp. 7_1]
 gi|229432249|gb|EEO42461.1| radical SAM family enzyme [Fusobacterium sp. 7_1]
          Length = 358

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 202/380 (53%), Gaps = 34/380 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN  +K +++ + +EEL E L+ +G+     +    +++ W++ +  R F  M+++S + 
Sbjct: 1   MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55

Query: 61  RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113
           R +L +   I +  ++  +IS  D T K+L     +       IETV +  K       R
Sbjct: 56  REILKEKTYIPFFNLLKHQISKIDRTEKFLFELEDKGT-----IETVLLRHKDSKNKEIR 110

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            TLC+SSQVGC + CSFC TG    +RNL+  EIL QV                    + 
Sbjct: 111 NTLCISSQVGCPVKCSFCATGQSGYMRNLSVSEILNQVYTVER--------------RLR 156

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232
             G  ++N+V MGMGEPL N DN+ KSLSI S+  G++ SKR+IT+STSG V  I + + 
Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGINISKRKITISTSGVVSGIEKILL 216

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           ++I + LAISLH+  N+ R+ ++P+N+ +PLE L      Y   +   RITFEY+++   
Sbjct: 217 DKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEYQKQTKR-RITFEYILIDNF 275

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351
           N S  DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R
Sbjct: 276 NISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRRVNVTLR 335

Query: 352 TPRGLDILAACGQLKSLSKR 371
             +G DI  ACGQL+  +K+
Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355


>gi|294785829|ref|ZP_06751117.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27]
 gi|294487543|gb|EFG34905.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27]
          Length = 358

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 202/380 (53%), Gaps = 34/380 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN  +K +++ + +EEL E L+ +G+     +    +++ W++ +  R F  M+++S + 
Sbjct: 1   MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55

Query: 61  RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113
           R +L +   I +  ++  ++S  D T K+L     +       IETV +  K       R
Sbjct: 56  REILKEKTYIPFFNLLKYQVSKIDKTEKFLFELEDKGT-----IETVLLRHKDSKNREIR 110

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            TLCVSSQVGC + CSFC TG    +RNL+  EIL Q+                    + 
Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVER--------------RLR 156

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232
             G  ++N+V MGMGEPL N DN+ KSLSI S+  G++ SKR+IT+STSG V  I + + 
Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILL 216

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           ++I + LAISLH+  N+ R+ ++P+N+ +PLE L      Y   +   RITFEY+++   
Sbjct: 217 DKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNF 275

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351
           N S  DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R
Sbjct: 276 NISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNIRKVNVTLR 335

Query: 352 TPRGLDILAACGQLKSLSKR 371
             +G DI  ACGQL+  +K+
Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355


>gi|308178831|ref|YP_003918237.1| radical SAM enzyme [Arthrobacter arilaitensis Re117]
 gi|307746294|emb|CBT77266.1| radical SAM enzyme [Arthrobacter arilaitensis Re117]
          Length = 377

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 177/372 (47%), Gaps = 23/372 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E +  L ++G+P      R  Q+    +     D + MSD+ +E R  L +
Sbjct: 22  THLADLSLAERQAKLKELGLPA----FRAKQLSVHYFQHYTTDPEKMSDLPKERRAELAE 77

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                    V    + DG T K+L R     +     +E+V +    R TLC+SSQ GC 
Sbjct: 78  AMFPKLLTEVKRLETDDGKTIKFLWRLFDGSL-----VESVLMRYPGRITLCISSQCGCG 132

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RN++  EIL Q++ A  ++ +                 ++ NIV M
Sbjct: 133 MNCPFCATGQAGLTRNMSTAEILDQIVQANRVIAEGGLGGRQH------PDERVGNIVFM 186

Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N+  V  ++         GL  + R IT+ST G VP I ++ EE + V  A+S
Sbjct: 187 GMGEPLANYKRVMNAVHRMVADTPEGLGMAARGITVSTVGLVPAIRKLTEENVQVTFALS 246

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ L+P+N ++ ++  +DA   Y   +   R++ EY ++K +ND    A  L
Sbjct: 247 LHAPDDELRDELIPVNSRWKVDEALDAAYDYYVKTGR-RVSIEYALIKDMNDHEWRAEML 305

Query: 303 IKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K L  +G     +N IP NP PG  +  S+      F   +   G  + +R  RG +I 
Sbjct: 306 AKKLNARGRGWVHVNPIPLNPVPGSIWTRSEPDITSKFVRRLDELGVPTTLRDTRGKEID 365

Query: 360 AACGQLKSLSKR 371
            ACGQL +   +
Sbjct: 366 GACGQLAADGDK 377


>gi|297562607|ref|YP_003681581.1| radical SAM enzyme, Cfr family [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847055|gb|ADH69075.1| radical SAM enzyme, Cfr family [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 365

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 188/368 (51%), Gaps = 25/368 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +  +E  E + ++G        R  Q+ +  +   + D   M+D+    R  L +
Sbjct: 17  RHLADLSPDERAEVVRELG----EKPFRAKQLAQHYFGSLVSDTSAMTDLPASSRERLGE 72

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                    V   I+CD   TRK L +         V  E+V +    R TLC+SSQ GC
Sbjct: 73  ALLPTLLTPV-RHITCDNGMTRKTLWK-----AFDGVLFESVLMRYPDRVTLCISSQAGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ QV+ +           D+    +     +ISNIV 
Sbjct: 127 GMNCPFCATGQAGLTRNLSTGEIIDQVVASAR---------DLANGEVAGGPGRISNIVF 177

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEP+ N+  V +S+   +D    GL  S+R +T+ST G VP I ++ +E + V LAI
Sbjct: 178 MGMGEPMANYKRVLQSVRRITDPVPNGLGISQRGVTVSTVGLVPAINKLIDERMQVRLAI 237

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVPIN ++ ++ ++DA   Y G +  RR++ EY ++K IND    A  
Sbjct: 238 SLHAPDDELRDELVPINTRWKVDEVLDAAWRYAG-TTGRRVSIEYALIKDINDQAWRADL 296

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L K+LKG    +NLIP NP PG ++  S  +D   F   ++  G +  +R  RG +I  A
Sbjct: 297 LGKLLKGHLVHVNLIPLNPTPGSKWTASRPEDEREFVRRLESHGVAVTVRDTRGQEIDGA 356

Query: 362 CGQLKSLS 369
           CGQL +  
Sbjct: 357 CGQLAAAE 364


>gi|255584867|ref|XP_002533149.1| catalytic, putative [Ricinus communis]
 gi|223527044|gb|EEF29230.1| catalytic, putative [Ricinus communis]
          Length = 420

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 186/374 (49%), Gaps = 38/374 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
           L+GM   EL++     G        R  Q+   IY R +++ Q  S + Q  R+ L +  
Sbjct: 58  LLGMSEPELQQLAADFG----QQSYRGKQLHHLIYQRKVKEIQDFSQLPQAFRNELQEAG 113

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQV 122
           + +    I     + DGT K L++     +     IETV IP +      R T C+SSQV
Sbjct: 114 WRVGRSPIYRTVTAADGTVKLLIKLEDNRL-----IETVGIPIQDEKGPVRLTACISSQV 168

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L CSFC TG     RNL   EI+ QVL    +                    +++N+
Sbjct: 169 GCPLRCSFCATGKGGYSRNLKRHEIVEQVLAIEEIFK-----------------NRVTNV 211

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V MGMGEP+ N  +V ++    +    +   +R IT+ST G    I ++   ++   LA+
Sbjct: 212 VFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASHKLQSTLAL 269

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +  LR  +VP  + YPL+ ++  CR Y  L  +RR++FEY +L G+ND    A  
Sbjct: 270 SLHAPNQKLRETIVPSAKSYPLDAIMKDCRDYF-LETSRRVSFEYALLAGVNDRAEHAKE 328

Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L ++L   G  + +NLIPFNP  G +Y    +K +  F+  ++    +  +R  RG+D  
Sbjct: 329 LAELLHEWGRGSHVNLIPFNPIEGSDYQRPSKKAVQAFAAALESRKITVSVRQTRGMDAS 388

Query: 360 AACGQLKSLSKRIP 373
           AACGQL++  ++ P
Sbjct: 389 AACGQLRNEFQKSP 402


>gi|33863770|ref|NP_895330.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
           marinus str. MIT 9313]
 gi|81577096|sp|Q7V5P5|RLMN_PROMM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33635353|emb|CAE21678.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 356

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 185/368 (50%), Gaps = 37/368 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++L+G    ELE   +  G P      R  Q+ +W+Y +G R F+ ++ + +  R  L Q
Sbjct: 11  QALLGCSATELEGWAVAEGQPA----FRGRQLHEWLYAKGARSFEAITVLPKSWRLSLQQ 66

Query: 67  H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              +I     V+  ++ D T K LL            IE+V IP + R T+C+SSQVGC 
Sbjct: 67  RGITIGRLLEVNRAVAVDDTTKLLL-----ATVDGETIESVGIPTQQRLTVCLSSQVGCP 121

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +G   L R+L   EI+ QVL  R  +                  R+ S++V M
Sbjct: 122 MACRFCASGKGGLQRSLATHEIVDQVLSLREAM-----------------DRRPSHVVFM 164

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVM 238
           GMGEPL N + V  ++   +    L  ++RRIT+ST G    +  + E            
Sbjct: 165 GMGEPLLNIEAVLAAIRCLNID--LGIAQRRITVSTVGVPHTLPHLAELAMKRLGRAQFT 222

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA + +LR  L+P    YP E L+  CRHY  ++   R+TFEY++L  +ND P+ 
Sbjct: 223 LAVSLHAPNQELRERLIPTACAYPFETLLQDCRHYLAVTGR-RVTFEYILLGALNDQPQH 281

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L   ++G  + +NLI +NP     +   + + I  F   +++ G +  +R  RGLD 
Sbjct: 282 AEELADRVRGFQSHVNLIAYNPIDDEGFQRPNPETIEAFRRVLEQRGVAVSLRASRGLDQ 341

Query: 359 LAACGQLK 366
            AACGQL+
Sbjct: 342 NAACGQLR 349


>gi|256026775|ref|ZP_05440609.1| florfenicol resistance protein [Fusobacterium sp. D11]
 gi|289764771|ref|ZP_06524149.1| radical SAM family enzyme [Fusobacterium sp. D11]
 gi|289716326|gb|EFD80338.1| radical SAM family enzyme [Fusobacterium sp. D11]
          Length = 358

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 202/380 (53%), Gaps = 34/380 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN  +K +++ + +EEL E L+ +G+     +    +++ W++ +  R F  M+++S + 
Sbjct: 1   MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFGEMTNLSLKD 55

Query: 61  RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113
           R +L +   I +  ++  +IS  D T K+L     +       IETV +  K       R
Sbjct: 56  REILKEKTYIPFFNLLKHQISKIDRTEKFLFELEDKGT-----IETVLLRHKDSKNKEIR 110

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            TLCVSSQVGC + CSFC TG    +RNL+  EIL Q+                    + 
Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTIER--------------RLR 156

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232
             G  ++N+V MGMGEPL N DN+ K+LSI S+  G++ SKR+IT+STSG V  I + + 
Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILL 216

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           ++I + LAISLH+  N+ R+ ++P+N+ +PLE L      Y   +   RITFEY+++   
Sbjct: 217 DKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEYQKQTKR-RITFEYILIDNF 275

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351
           N S  DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R
Sbjct: 276 NISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRKVNVTLR 335

Query: 352 TPRGLDILAACGQLKSLSKR 371
             +G DI  ACGQL+  +K+
Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355


>gi|167753918|ref|ZP_02426045.1| hypothetical protein ALIPUT_02203 [Alistipes putredinis DSM 17216]
 gi|167658543|gb|EDS02673.1| hypothetical protein ALIPUT_02203 [Alistipes putredinis DSM 17216]
          Length = 344

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/361 (34%), Positives = 186/361 (51%), Gaps = 29/361 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L G    +LE    ++ +P    R    QI +W+Y +     + MSD+S   R LL + +
Sbjct: 7   LYGQTLPQLEALCNRLEMP----RFAAKQIARWLYDKHATTIEAMSDLSARHRALLAETY 62

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            +         IS DGT+K+L R           IE+ YIP+  R TLC+SSQ GC + C
Sbjct: 63  EVGLTAPEKVSISTDGTKKYLYRTSQNHF-----IESAYIPDGDRATLCISSQAGCRMGC 117

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG Q L  +L+  EIL Q+                          +++N+V MGMG
Sbjct: 118 RFCATGRQGLQHSLSTNEILNQI-------------------ESLPERERLTNVVFMGMG 158

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EPL N D++  +L + + + G  +S  RIT+ST+G    + R  E   V LA+SLH    
Sbjct: 159 EPLDNLDSLLPALEVLTSAWGFGWSPTRITVSTAGVASRLERFLEATQVHLAVSLHNPFP 218

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
             R  ++PI + +P+  +++  R Y   ++ RR++FEY+++ G+NDSPR    L ++L G
Sbjct: 219 HERAEIMPIEKAWPIREVVEILRRY-DFTHQRRVSFEYIVMSGLNDSPRHIRELCRLLDG 277

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           I  +INLI F+  PG  Y   D + ++ F + +   G  + IRT RG DI AACG L + 
Sbjct: 278 IKCRINLIRFHKIPGSPYFSPDDRAMIAFRDALTAKGIHTTIRTSRGEDIQAACGLLSTA 337

Query: 369 S 369
            
Sbjct: 338 Q 338


>gi|294674247|ref|YP_003574863.1| 23S rRNA m2A2503 methyltransferase [Prevotella ruminicola 23]
 gi|294472979|gb|ADE82368.1| 23S rRNA m2A2503 methyltransferase [Prevotella ruminicola 23]
          Length = 357

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 193/377 (51%), Gaps = 40/377 (10%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K+ L+GM   EL++ + ++G+P    +   +QI KW+Y + +     M+++S+  R  L
Sbjct: 4   EKKVLLGMQPGELQQVVTELGMP----KFTAAQIAKWLYQQHVGSIADMTNLSKANREKL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----------SR 113
            + + +     +D + S DGT K+L             +ETVYIPE+            R
Sbjct: 60  AEQYEVGSMAPIDCQRSVDGTIKYLF-----PTRSGKFVETVYIPERRRVGEQGSGIGDR 114

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            TLCVS QVGC + C FC TG Q    +LTA +IL Q+                      
Sbjct: 115 ATLCVSCQVGCKMNCLFCQTGKQGFEGSLTAADILNQIYALPERD--------------- 159

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
                ++NIV MG GEP+ N D + ++  + +   G ++S RRIT+S+ G    + R  +
Sbjct: 160 ----TLTNIVFMGQGEPMDNLDAILQATQVLTADWGYAWSPRRITVSSVGVKNKLKRFLD 215

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
           E    +AIS+H+   + R +L+P  ++  +  +ID  + Y   S+ RR +FEY+   G+N
Sbjct: 216 ESECHVAISMHSPLPEQRQMLMPAEKQMSITEVIDLLKQY-DFSHQRRCSFEYICFAGLN 274

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D+   A  ++K+++G+  ++NLI F+  PG +   +D+K +    + +   G  + IR  
Sbjct: 275 DTTMHAREIVKLVRGLDCRVNLIRFHEIPGVDLPGADEKRMEALRDYLTAHGVFTTIRAS 334

Query: 354 RGLDILAACGQLKSLSK 370
           RG DI AACG L +  K
Sbjct: 335 RGQDIFAACGLLSTAKK 351


>gi|183601687|ref|ZP_02963057.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241190814|ref|YP_002968208.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196220|ref|YP_002969775.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183219293|gb|EDT89934.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249206|gb|ACS46146.1| hypothetical protein Balac_0778 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250774|gb|ACS47713.1| hypothetical protein Balat_0778 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793803|gb|ADG33338.1| hypothetical protein BalV_0750 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 398

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 186/366 (50%), Gaps = 26/366 (7%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
            +  +E      ++G+P    + R  Q+    Y     D    +D     R  + + F  
Sbjct: 49  DLTDDERIAKAKELGLP----KFRVRQLANHYYGHFDADAGYFTDFPAGKRDEVAREFFP 104

Query: 71  IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
                V  +++ DG T K L            +IE+V +   +R TLC+SSQVGC + C 
Sbjct: 105 TLIREVTRQVADDGQTIKTLWELFD-----GSKIESVLMRYPNRTTLCISSQVGCGMGCP 159

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG   L RN++  EIL QV +A +++         E   +     ++SN+V MGMGE
Sbjct: 160 FCATGQLGLTRNMSTGEILEQVRIAAAMM---------ERGEVAGGPGRLSNVVFMGMGE 210

Query: 190 PLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           P+ N+  +  ++   S     G   S R IT+ST G VP I R+ +E + V LA+SLHA 
Sbjct: 211 PMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPGIRRLAQEGMPVRLAVSLHAP 270

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N LR+ LVP+NR++ ++ ++DA   Y  L++ RR++ EY +++GIND    A  L   L
Sbjct: 271 NNALRDELVPMNRRFNVDEVLDAAHDYY-LASKRRVSIEYALMRGINDQEIHARQLANRL 329

Query: 307 KGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
                  A +N IP NP  G ++  S  +D   F E +  +G ++ +R  RG DI  ACG
Sbjct: 330 NHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLEILHNAGITATLRDTRGQDIDGACG 389

Query: 364 QLKSLS 369
           QL + +
Sbjct: 390 QLAAKT 395


>gi|219683780|ref|YP_002470163.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219621430|gb|ACL29587.1| radical SAM enzyme, Cfr family protein [Bifidobacterium animalis
           subsp. lactis AD011]
          Length = 393

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 186/366 (50%), Gaps = 26/366 (7%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
            +  +E      ++G+P    + R  Q+    Y     D    +D     R  + + F  
Sbjct: 44  DLTDDERIAKAKELGLP----KFRVRQLANHYYGHFDADAGYFTDFPAGKRDEVAREFFP 99

Query: 71  IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
                V  +++ DG T K L            +IE+V +   +R TLC+SSQVGC + C 
Sbjct: 100 TLIREVTRQVADDGQTIKTLWELFD-----GSKIESVLMRYPNRTTLCISSQVGCGMGCP 154

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG   L RN++  EIL QV +A +++         E   +     ++SN+V MGMGE
Sbjct: 155 FCATGQLGLTRNMSTGEILEQVRIAAAMM---------ERGEVAGGPGRLSNVVFMGMGE 205

Query: 190 PLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           P+ N+  +  ++   S     G   S R IT+ST G VP I R+ +E + V LA+SLHA 
Sbjct: 206 PMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPGIRRLAQEGMPVRLAVSLHAP 265

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N LR+ LVP+NR++ ++ ++DA   Y  L++ RR++ EY +++GIND    A  L   L
Sbjct: 266 NNALRDELVPMNRRFNVDEVLDAAHDYY-LASKRRVSIEYALMRGINDQEIHARQLANRL 324

Query: 307 KGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
                  A +N IP NP  G ++  S  +D   F E +  +G ++ +R  RG DI  ACG
Sbjct: 325 NHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLEILHNAGITATLRDTRGQDIDGACG 384

Query: 364 QLKSLS 369
           QL + +
Sbjct: 385 QLAAKT 390


>gi|308234069|ref|ZP_07664806.1| 23S rRNA m(2)A-2503 methyltransferase [Atopobium vaginae DSM 15829]
 gi|328943466|ref|ZP_08240931.1| cfr family radical SAM enzyme [Atopobium vaginae DSM 15829]
 gi|327491435|gb|EGF23209.1| cfr family radical SAM enzyme [Atopobium vaginae DSM 15829]
          Length = 416

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 190/372 (51%), Gaps = 28/372 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  +  +  ++L   L  +G P      R  QI  W++ +  R F  M+++S+++R  L
Sbjct: 72  QKVEIRSLNHDQLTYELTSMGEPA----FRVKQIEAWLWQKNARSFDDMTNLSKKLRARL 127

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + F++  P +V +++S DG+RK+LLRF        V  E V +P K++  +CVS+Q GC
Sbjct: 128 KEKFALYSPALVSKQVSQDGSRKYLLRFQD-----GVMAECVGMPTKNKLAICVSTQAGC 182

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC TG   L R+LT  EI  Q L  +                      ++++ V+
Sbjct: 183 AIGCVFCATGKAGLTRSLTGYEIYEQALFIQD-----------------DFQMRVASAVL 225

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG GEPL N++    +L + + ++GL    R +T+ST G +PNI +   E     LA+SL
Sbjct: 226 MGQGEPLTNYNASIFALKMMNSAIGLGVGARHLTISTCGILPNIIKFSHEKEQFTLAVSL 285

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+     R+ L+P  +++ L+ L D    Y   +   R T+EY ++KG+ND+  +   L 
Sbjct: 286 HSAVQSTRDYLMPGVKRFNLQHLHDTMNLYVEATGR-RPTYEYALIKGVNDTDEELAALC 344

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
               G  A +NLI  N      +L + +K    F + +KR G  + IR  RG DI AACG
Sbjct: 345 DFCAGTLAHVNLIQLNKIDDSPFLPTSEKRAEHFVKTLKRFGVEATIRHSRGADIDAACG 404

Query: 364 QLKSLSKRIPKV 375
           QLK       +V
Sbjct: 405 QLKQKVVGKKRV 416


>gi|256420250|ref|YP_003120903.1| radical SAM enzyme, Cfr family [Chitinophaga pinensis DSM 2588]
 gi|256035158|gb|ACU58702.1| radical SAM enzyme, Cfr family [Chitinophaga pinensis DSM 2588]
          Length = 347

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/365 (34%), Positives = 198/365 (54%), Gaps = 25/365 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K ++  +   EL++    I         R  Q+++W++++    F  M++IS+++R  L 
Sbjct: 5   KTNIRHLSLPELQKYFGSI----EEKPFRAKQVYEWLWLKHATSFDAMTNISKDLRSKLE 60

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF++        + S DGT K   R           +E V IP  +R T CVSSQVGCS
Sbjct: 61  EHFTLPAITTDTTQHSDDGTIKSRFRLHD-----GHMVEGVLIPTDTRQTACVSSQVGCS 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L+C FC TG     RNL  +EI  +V L      +             + G+K+SNIV M
Sbjct: 116 LSCKFCATGYMDRKRNLDFDEIYDEVALLNQQAME-------------AYGKKLSNIVYM 162

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N+ NV +S+   +   GL  S RRIT+ST+G    I ++G++ +   LA+SLH
Sbjct: 163 GMGEPLLNYKNVLQSIERITSPDGLGMSPRRITVSTAGVAKMIRQLGDDKVKFNLALSLH 222

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +++ R+ ++PIN    L++LI+A   Y       +I+FEY++ K  NDS +DA  LI+
Sbjct: 223 AANDEKRSQIMPINDTNNLKVLIEALN-YFYKETQNQISFEYILFKDFNDSFKDAEELIR 281

Query: 305 ILKGIPA-KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           I + +PA  +N+I +NP     ++  D+     F E + ++  ++ +R  RG DI AACG
Sbjct: 282 IYRQVPADLVNIIEYNPISNARFMKPDEDVAEAFMEYLSKNRVNARLRRSRGKDIDAACG 341

Query: 364 QLKSL 368
           QL + 
Sbjct: 342 QLANK 346


>gi|329120993|ref|ZP_08249624.1| cfr family radical SAM enzyme [Dialister micraerophilus DSM 19965]
 gi|327471155|gb|EGF16609.1| cfr family radical SAM enzyme [Dialister micraerophilus DSM 19965]
          Length = 344

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 195/363 (53%), Gaps = 29/363 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            + G   +ELEE +     P    + R  QI  ++Y R I  F  M  + + +R  L ++
Sbjct: 4   DIWGKSLKELEEYITLNNFP----KFRAKQIHDYLYHRCIFTFDEMKQLPKNMREWLKEN 59

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            SI  PE+++   S DG T K L +     +      ETV +  K   ++CVS+Q+GC++
Sbjct: 60  ASIYIPEVINSIQSNDGNTTKILFKLKDGSLA-----ETVCMHHKYGNSICVSTQIGCAM 114

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +    L RNLT  E+L QV   + L                     + +IV+MG
Sbjct: 115 GCIFCASTRNGLERNLTFGEMLSQVYAFKKLK-----------------NISVHSIVLMG 157

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHA 245
            GEPL N++N  K + + +DS  L+ S R ITLST G VP I R+  E + + LAISLHA
Sbjct: 158 AGEPLTNYENCLKFIKLCNDSSILNISYRNITLSTCGIVPQIYRLEKENLPITLAISLHA 217

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +RN ++P ++ + +E +I A +HY   +   RITFEY+++KGIN +P+ A+ L K+
Sbjct: 218 PNDKIRNEILPSSKHFKIEDVIRASKHYFENTGR-RITFEYILIKGINAAPKHAVELAKL 276

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +  +   INLIP N     +     +K+I  F + +++ G S+ +R   G +I AACGQL
Sbjct: 277 IGNLNCHINLIPVNGTEHIQLFAPSKKEIFEFQQILEKMGKSATVRRQMGNEIQAACGQL 336

Query: 366 KSL 368
           K  
Sbjct: 337 KRR 339


>gi|157364703|ref|YP_001471470.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
           lettingae TMO]
 gi|205829915|sp|A8F8C2|RLMN_THELT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157315307|gb|ABV34406.1| radical SAM enzyme, Cfr family [Thermotoga lettingae TMO]
          Length = 343

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/361 (36%), Positives = 199/361 (55%), Gaps = 30/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++ M  E+  + + ++G+     + R  QI  WIY + +  F+ M+++S++ R LL ++
Sbjct: 2   NILSMTYEKFVQKIQELGLE----KYRADQILDWIYKKHVFVFEQMTNLSKQHRSLLREN 57

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F I  P+IV +++S  D T K+L             IE+V +  +   T C+S+Q+GC +
Sbjct: 58  FCIQIPKIVSKRVSSIDKTTKYLYELSD-----GNTIESVLLFHEGYATACISTQIGCPV 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC TG    VRNL A EI+ Q+L                        + + NIV MG
Sbjct: 113 KCSFCATGQSGFVRNLDAGEIVSQILAIEK-----------------DSKQTVRNIVYMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEPL N+DNV KS+ I  D    +   RR+TLST G    I ++ EE + + LAISLHA
Sbjct: 156 MGEPLLNYDNVIKSIKILIDKKTKNIGIRRVTLSTVGIPEMILKLSEERLDLNLAISLHA 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+ R+ ++PINRKY ++ +I+A ++Y   S+  R+T EY+++K  ND   DA  L K+
Sbjct: 216 STNEKRDQIIPINRKYSIQEIINAAKNYQERSDR-RLTIEYILIKEFNDFDEDARKLAKL 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L G+   +NLIP N      +    +  I  F E +  SG  + IR  +G DI AACGQL
Sbjct: 275 LNGLKVFVNLIPVNST-FSNFEKPAKWKINRFKEILINSGIEAEIRYEKGADIEAACGQL 333

Query: 366 K 366
           +
Sbjct: 334 R 334


>gi|168059243|ref|XP_001781613.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666927|gb|EDQ53569.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 390

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/374 (34%), Positives = 199/374 (53%), Gaps = 38/374 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
           LIG  +EELE+ +L +G      + R  Q+++ IY   I+  + ++ + +++R+ + +  
Sbjct: 35  LIGKTQEELEDIVLSLG----EQKYRGKQMYQLIYKNKIKTVKELAQLPKQLRNAMTEAG 90

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQV 122
           +SI    I     S DGT K LL+     +     +E V IP K      R T+CVSSQV
Sbjct: 91  WSIGRSPIHHVSTSKDGTVKILLKLEDNRL-----VEAVGIPVKDKEGNQRLTVCVSSQV 145

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C+FC TG     RNL A EI+ QVL    L                    +++NI
Sbjct: 146 GCALRCAFCATGKGGFARNLKAHEIVDQVLSIEDLFRQ-----------------RVTNI 188

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V MGMGEPL N DNV  +    +    L   +R +T+ST G    I R+   ++   LAI
Sbjct: 189 VFMGMGEPLMNLDNVLDAHRTINKE--LQIGQRMMTISTVGVPNTIRRLATHKLQSTLAI 246

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA + +LR+ +VP  + YPL+ L++ C++Y   +  RR++FEY +L G+ND    A  
Sbjct: 247 SLHAPNQELRSRIVPSAKGYPLDALMEDCKYYFE-TTGRRLSFEYTLLAGVNDQREHAEE 305

Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L  +L    +   +N+IP+NP    E+    +  ++ F E + +   ++ +R  RGLD  
Sbjct: 306 LATLLHQWNLGRHVNIIPYNPIADSEFERPTKAKVLAFVETLSKRRVTASVRVTRGLDAN 365

Query: 360 AACGQLKSLSKRIP 373
           AACGQL++  ++IP
Sbjct: 366 AACGQLRNEFQKIP 379


>gi|307297434|ref|ZP_07577240.1| radical SAM enzyme, Cfr family [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916694|gb|EFN47076.1| radical SAM enzyme, Cfr family [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 339

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/365 (36%), Positives = 199/365 (54%), Gaps = 29/365 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + ++ +  +EL   ++  G        R +QI+KW+Y + + DF  M+D+   +R+ L  
Sbjct: 2   KDILSLDLDELRREIISFG----EKDYRANQIFKWVYAKRVLDFSEMTDLPMNLRNKLGS 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F     + V+ +IS DGT K+LL+           IETV +      T C+SSQVGC+L
Sbjct: 58  LFRFTTMKEVERQISIDGTEKFLLKLEDDNH-----IETVVLKHPRHVTFCISSQVGCAL 112

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC TG     R+L+A EI+ QV+L                    S+GR + NIV MG
Sbjct: 113 NCSFCATGASGFTRDLSASEIVSQVILME-----------------NSIGRPVDNIVFMG 155

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEP  N  NV K++ I  D +G +   R  T+ST+G    I R+ +  + V L++SLH+
Sbjct: 156 MGEPFLNEANVYKAIKILHDPVGRNLGIRHFTISTAGIPEGIKRLADSGMDVRLSVSLHS 215

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            S + R+ L+PIN+KYPL+ L     +Y   +   RITFEY ++KG+NDS  D   L + 
Sbjct: 216 ASEETRSSLMPINKKYPLDSLRKVLDYYQQKT-GNRITFEYALIKGVNDSKEDLTKLGEF 274

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L GI + +N+IP NP     +     ++I  FSE +K++G+   +R  +G DI AACGQL
Sbjct: 275 LTGIKSFVNIIPVNPVKPV-FDRPSDREIAVFSESLKKAGFECAVRHEKGTDIEAACGQL 333

Query: 366 KSLSK 370
           +   +
Sbjct: 334 RQKRR 338


>gi|218189834|gb|EEC72261.1| hypothetical protein OsI_05406 [Oryza sativa Indica Group]
          Length = 395

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 183/374 (48%), Gaps = 38/374 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67
           L+G+   +L +  + +G        R  Q+   +Y    +  Q  S + +  R  L    
Sbjct: 36  LLGLSEPDLRQLAVDLG----QQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFREALVGAG 91

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQV 122
           + +    +     + DGT K LL+     +     IETV IP        R T CVSSQV
Sbjct: 92  WKVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDKGPSRLTACVSSQV 146

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L CSFC TG     RNL A EI+ QVL                     +   +++N+
Sbjct: 147 GCPLRCSFCATGKGGFARNLHAHEIVEQVLAIEE-----------------TFQHRVTNV 189

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V MGMGEP+ N  +V ++    +    L   +R IT+ST G    I ++   ++   LA+
Sbjct: 190 VFMGMGEPMLNLKSVLEAHRCLNKE--LKIGQRMITISTVGVPNTIKKLASHKLQSTLAV 247

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +  LR  +VP  + YPLE L+D C++Y  L   RR++FEY +L GIND+   A  
Sbjct: 248 SLHAPNQKLRETIVPSAKSYPLEALMDDCKNYF-LETGRRVSFEYTLLAGINDAKEHAEE 306

Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L ++L   G    +NLIP+NP  G EY    +K +  F + ++    +  +R  RGLD  
Sbjct: 307 LAELLHTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDAN 366

Query: 360 AACGQLKSLSKRIP 373
           AACGQL++  ++ P
Sbjct: 367 AACGQLRNEFQKNP 380


>gi|300933099|ref|ZP_07148355.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
           resistens DSM 45100]
          Length = 371

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 192/370 (51%), Gaps = 26/370 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  M REE++EA+ ++G+P    + R  Q+ +  Y R + D + M+D+ +  R  + +
Sbjct: 19  VHLADMSREEVKEAVAELGLP----KFRADQLARQYYGRLLADPEEMTDLPENKRGPVRE 74

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                    +    + DG TRK L R     +     +E+V +    R TLC+SSQ GC 
Sbjct: 75  ALFPQLMTPLRHLNTDDGETRKTLWRLFDGTL-----LESVLMRYPGRATLCISSQAGCG 129

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  E++ QV  A + + D           +     ++SNIV M
Sbjct: 130 MACPFCATGQGGLDRNLSVGEMVEQVRHAAAAMRD---------GEVEGGEGRLSNIVFM 180

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N+  V  ++   +     G   S+R +T+ST G  P I ++ +E + V LA+S
Sbjct: 181 GMGEPLANYKRVVDTIRKITSPPPEGFGISQRNVTVSTVGLAPAIRKLADEGMTVRLAVS 240

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH   ++LR+ LVP+N ++ ++ ++DA R+Y   S   R++ EY +++ +ND P  A  L
Sbjct: 241 LHTPDDELRDELVPVNNRWSVDEVLDAARYYADTSGR-RVSIEYALIRDMNDQPWRADLL 299

Query: 303 IKILKG---IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K L+G       +N+IP NP PG ++  S +     F   ++  G    +R  +G +I 
Sbjct: 300 GKKLRGALGSKVHVNVIPLNPTPGSKWDASPKAVQDEFVRRVEAQGVPCTVRDTKGQEIA 359

Query: 360 AACGQLKSLS 369
           AACGQL +  
Sbjct: 360 AACGQLAAEE 369


>gi|297598414|ref|NP_001045547.2| Os01g0973400 [Oryza sativa Japonica Group]
 gi|57899226|dbj|BAD87375.1| radical SAM domain-containing protein-like [Oryza sativa Japonica
           Group]
 gi|57899699|dbj|BAD87419.1| radical SAM domain-containing protein-like [Oryza sativa Japonica
           Group]
 gi|215697144|dbj|BAG91138.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215708729|dbj|BAG93998.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215740846|dbj|BAG97002.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215765571|dbj|BAG87268.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255674123|dbj|BAF07461.2| Os01g0973400 [Oryza sativa Japonica Group]
          Length = 397

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 183/374 (48%), Gaps = 38/374 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67
           L+G+   +L +  + +G        R  Q+   +Y    +  Q  S + +  R  L    
Sbjct: 38  LLGLSEPDLRQLAVDLG----QQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFREALVGAG 93

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQV 122
           + +    +     + DGT K LL+     +     IETV IP        R T CVSSQV
Sbjct: 94  WKVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDKGPSRLTACVSSQV 148

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L CSFC TG     RNL A EI+ QVL                     +   +++N+
Sbjct: 149 GCPLRCSFCATGKGGFARNLHAHEIVEQVLAIEE-----------------TFQHRVTNV 191

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V MGMGEP+ N  +V ++    +    L   +R IT+ST G    I ++   ++   LA+
Sbjct: 192 VFMGMGEPMLNLKSVLEAHRCLNKE--LKIGQRMITISTVGVPSTIKKLASHKLQSTLAV 249

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +  LR  +VP  + YPLE L+D C++Y  L   RR++FEY +L GIND+   A  
Sbjct: 250 SLHAPNQKLRETIVPSAKSYPLEALMDDCKNYF-LETGRRVSFEYTLLAGINDAKEHAEE 308

Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L ++L   G    +NLIP+NP  G EY    +K +  F + ++    +  +R  RGLD  
Sbjct: 309 LAELLHTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDAN 368

Query: 360 AACGQLKSLSKRIP 373
           AACGQL++  ++ P
Sbjct: 369 AACGQLRNEFQKNP 382


>gi|289178553|gb|ADC85799.1| Radical SAM family enzyme [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 430

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 186/366 (50%), Gaps = 26/366 (7%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
            +  +E      ++G+P    + R  Q+    Y     D    +D     R  + + F  
Sbjct: 81  DLTDDERIAKAKELGLP----KFRVRQLANHYYGHFDADAGYFTDFPAGKRDEVAREFFP 136

Query: 71  IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
                V  +++ DG T K L            +IE+V +   +R TLC+SSQVGC + C 
Sbjct: 137 TLIREVTRQVADDGQTIKTLWELFD-----GSKIESVLMRYPNRTTLCISSQVGCGMGCP 191

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG   L RN++  EIL QV +A +++         E   +     ++SN+V MGMGE
Sbjct: 192 FCATGQLGLTRNMSTGEILEQVRIAAAMM---------ERGEVAGGPGRLSNVVFMGMGE 242

Query: 190 PLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           P+ N+  +  ++   S     G   S R IT+ST G VP I R+ +E + V LA+SLHA 
Sbjct: 243 PMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPGIRRLAQEGMPVRLAVSLHAP 302

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N LR+ LVP+NR++ ++ ++DA   Y  L++ RR++ EY +++GIND    A  L   L
Sbjct: 303 NNALRDELVPMNRRFNVDEVLDAAHDYY-LASKRRVSIEYALMRGINDQEIHARQLANRL 361

Query: 307 KGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
                  A +N IP NP  G ++  S  +D   F E +  +G ++ +R  RG DI  ACG
Sbjct: 362 NHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLEILHNAGITATLRDTRGQDIDGACG 421

Query: 364 QLKSLS 369
           QL + +
Sbjct: 422 QLAAKT 427


>gi|262202048|ref|YP_003273256.1| radical SAM protein [Gordonia bronchialis DSM 43247]
 gi|262085395|gb|ACY21363.1| radical SAM enzyme, Cfr family [Gordonia bronchialis DSM 43247]
          Length = 368

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 184/367 (50%), Gaps = 27/367 (7%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
            +  +    A+ ++G+P    + R +Q+ +  Y R   D   M+D+    R  +      
Sbjct: 22  DLDAQARVAAVAELGLP----KFRANQLARQYYARLNGDVAEMTDLPASARDSVGAALFP 77

Query: 71  IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
                V      DG TRK L R     +     +E+V +    R TLC+SSQ GC + C 
Sbjct: 78  PLLTPVRHISCDDGSTRKTLWRLHDGTL-----LESVLMRYPDRNTLCISSQAGCGMACP 132

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG   L RNL+  EI+ QV  A   L D    E            ++SN+V MGMGE
Sbjct: 133 FCATGQGGLDRNLSTAEIVDQVRCAARSLRDGEFGEPG----------RLSNVVFMGMGE 182

Query: 190 PLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           PL N+  V  ++   +     GL  S R +T+ST G  P+I R+ +E + V LA+SLH  
Sbjct: 183 PLANYTRVVSAVRQITSPAPDGLGISARSVTVSTVGLAPSIRRLADEGLAVTLAVSLHTP 242

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++LR+ LVP+N ++ ++ ++DA R+Y   +  RR++ EY +++ +ND P  A  L K L
Sbjct: 243 DDELRDTLVPVNNRWSVQEVLDAARYYAD-TTGRRVSIEYALIRDVNDQPWRADMLGKKL 301

Query: 307 K---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
               G    +NLIP NP PG E+  S +     F   ++  G S  +R  RG +I AACG
Sbjct: 302 HKALGSRVHVNLIPLNPTPGSEWDASPKPVEREFVRRVREQGVSCTVRDTRGQEIAAACG 361

Query: 364 QLKSLSK 370
           QL +  +
Sbjct: 362 QLAAEER 368


>gi|313672236|ref|YP_004050347.1| 23S rRNA m(2)a-2503 methyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938992|gb|ADR18184.1| 23S rRNA m(2)A-2503 methyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 350

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 217/370 (58%), Gaps = 28/370 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K     M+ EEL++ +++ G        R  Q++KWI+ +G++DF  M+D+S E+R  
Sbjct: 1   MIKID--SMLLEELKDFMVEQG----EKSFRGEQVYKWIFQKGVKDFSQMTDLSVELRGK 54

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L  + S  Y + ++ K    DG++K+L     +      +IE+V + ++ R TLCVS+QV
Sbjct: 55  LQNNASFTYLKPIEIKRDEYDGSQKFLFELEDKN-----KIESVALKDQDRITLCVSTQV 109

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C+FC T     +R+LTA EI+ Q++                   + +   K++NI
Sbjct: 110 GCRMGCAFCATAKIGFIRDLTAGEIVRQIMEVNEH--------------LATNSEKVTNI 155

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N+ NV K++ I +D MGL +S R++T+STSG V  I  + + +  V LA+
Sbjct: 156 VFMGMGEPLDNYHNVVKAIGIITDEMGLGYSHRKVTVSTSGVVDRIDELFKLKKQVNLAV 215

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SL+A ++D+R+ ++PIN+K+ +E L+   +  P +   +RIT EYVM+KG+ND+  DA  
Sbjct: 216 SLNATTDDIRSAIMPINKKFNIEKLMKKLKSLP-IQKRKRITIEYVMIKGVNDTLDDAKR 274

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+++L G+P KINLI +N      Y   D++ +++F + +     ++ IR   G +I  A
Sbjct: 275 LVRLLNGLPIKINLIAYNDGGNENYRAPDEQTVLSFQKYLVDKHITAFIRKSLGKNIEGA 334

Query: 362 CGQLKSLSKR 371
           CGQL +   +
Sbjct: 335 CGQLYAKYNK 344


>gi|237753454|ref|ZP_04583934.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375721|gb|EEO25812.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 354

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 133/366 (36%), Positives = 197/366 (53%), Gaps = 26/366 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+++       L   L   G      + R  QI+ W+Y+R + DF+ M ++ +E++  L 
Sbjct: 2   KDNIFSYSLNALGLKLESAGF----QKFRAKQIYHWLYIRYVEDFEAMDNLPKELKTYLK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGC 124
           + F+    +I  ++ S DG+ K+L +            E V++  K  + TLC+SSQVGC
Sbjct: 58  ETFTTTSAQICKQEKSLDGSVKYLFQAQDNLT-----YEAVFLKMKEDKFTLCLSSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + CSFC T     VRNL+  EI+ QVL  +                      K  NIV 
Sbjct: 113 KVGCSFCLTAKGGFVRNLSTGEIVYQVLAIKKAQNI--------------PHNKAINIVY 158

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MGMGEPL N DNV  ++ I ++  GLS S RR T+STSG  P I ++G   +GV LAISL
Sbjct: 159 MGMGEPLDNLDNVTNTIKILAELDGLSISTRRQTISTSGIAPKIKKLGTLNLGVQLAISL 218

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV + LR+ L+PIN+ Y ++ +ID    +P + + +R+ FEY+++ G+ND    A  L+
Sbjct: 219 HAVDDKLRSELMPINKAYNIQAVIDEVVQFP-IDSRKRVMFEYLVIDGLNDGLDSAKKLV 277

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L  + AK+NLI FNP  G  Y     + +  F E + + G    IR  +GLDI AACG
Sbjct: 278 ALLNKLKAKVNLIYFNPHEGSIYKRPSAEKVEAFREFLLKKGLLCTIRESKGLDISAACG 337

Query: 364 QLKSLS 369
           QL+   
Sbjct: 338 QLRERE 343


>gi|161528893|ref|YP_001582719.1| radical SAM protein [Nitrosopumilus maritimus SCM1]
 gi|205829829|sp|A9A3L9|RLMN_NITMS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|160340194|gb|ABX13281.1| radical SAM enzyme, Cfr family [Nitrosopumilus maritimus SCM1]
          Length = 351

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/371 (31%), Positives = 196/371 (52%), Gaps = 35/371 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  ++ EE+E+ ++ +G      R R  QI   +Y +  +D   +  + +++R    +
Sbjct: 2   TDLYRLLPEEMEKLVIDMGYD----RYRADQILLPLYYKFPKDINDIPQLPKKLREEFTE 57

Query: 67  H-FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPE-------KSRGTLC 117
             ++I   + +   +S DG T K LL            +ETV +           R T+C
Sbjct: 58  AGYTIGSAKEIHRVVSDDGDTTKLLLELSD-----GSSVETVLMQYEPTKIGGHPRSTIC 112

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VS+Q+GC++ C FC TG      NL AE I+ QV+    LL                 G 
Sbjct: 113 VSTQIGCAMGCVFCATGQMGFETNLKAEHIVSQVIHFAELLEQ--------------RGE 158

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
            ++N+V MGMGEP+ N+D + +++ I +   G    +R IT+ST G    I ++ EE + 
Sbjct: 159 HVTNLVFMGMGEPMANYDEMIRAVKILTHDRGFGLGQRHITISTIGITSGIEKLAEENLQ 218

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LAISLHA +N+LR  LVP      +E +I + R Y   +   R+TFEY +++G+NDSP
Sbjct: 219 IGLAISLHAPNNELRKKLVPTAGPNSVEDIIKSGRDYFKKTGR-RVTFEYALMEGVNDSP 277

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L ++L+G  + +N+IP NP  G ++    +K+++ F + +++SG +  +R  +G 
Sbjct: 278 EIAHELARLLRGNGSHVNIIPINPTAG-DFKRPSEKNVLEFEQILRKSGVNCTVRVEKGT 336

Query: 357 DILAACGQLKS 367
           +I AACGQL++
Sbjct: 337 EISAACGQLRT 347


>gi|309389025|gb|ADO76905.1| 23S rRNA m(2)A-2503 methyltransferase [Halanaerobium praevalens DSM
           2228]
          Length = 347

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/367 (35%), Positives = 200/367 (54%), Gaps = 24/367 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L  + R EL E L K G P      R  Q++ W+Y  GI   + M +I +++R  L+ 
Sbjct: 2   KDLKELTRNELIEDLKKAGFPA----YRGEQVFNWLYKNGISKTEEMKNIPKKMRSYLDN 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGC 124
           ++++   +     ++ DGT K+L +           IE VY+P     R + C+S+QVGC
Sbjct: 58  NYNLNNLKESKRSVAVDGTVKYLWQLND-----GENIEGVYLPFPESGRHSACISTQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L CSFC TG   L RNLT  EI+ QVL  +            +         ++SN+V 
Sbjct: 113 GLGCSFCATGIDGLKRNLTTGEIVEQVLEIQK-----------DISGSNFAEPRLSNLVF 161

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MGMGEPL NFDN+ +++ I + + GL+   R++T+ST+G VP I ++ +    + LAISL
Sbjct: 162 MGMGEPLANFDNLMQAVEILNSNQGLNIGMRKMTISTAGLVPEIKKLAKVNDQIGLAISL 221

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA ++ LRN ++PIN+KY +  L+     Y   +   R+TFEYV++  +NDSP  ++ L 
Sbjct: 222 HAPNDRLRNKIMPINKKYNINQLLKTVIDYIEKTGR-RVTFEYVLMDSVNDSPELSVQLS 280

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L+GI   +NLIP NP P        QK I +F + +  +G    +R   G  I AACG
Sbjct: 281 ELLRGINCHVNLIPANPVPELGIERPVQKVIDSFYDTLVNNGIQVSLRKEMGSQIEAACG 340

Query: 364 QLKSLSK 370
           QLK   K
Sbjct: 341 QLKRKEK 347


>gi|25028463|ref|NP_738517.1| hypothetical protein CE1907 [Corynebacterium efficiens YS-314]
 gi|81749328|sp|Q8FP78|RLMN_COREF RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|23493748|dbj|BAC18717.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 369

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/378 (30%), Positives = 184/378 (48%), Gaps = 31/378 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +       +  E+  EAL ++G+P    + R +QI +  Y R   D   M+D+ +  R  
Sbjct: 16  MPPAHFADLSDEQRIEALSELGLP----KFRLNQIARHYYGRLEADPMTMTDLPEAARAK 71

Query: 64  LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +         E +    + D  T+K L +     +     +E+V +    R TLC+SSQ 
Sbjct: 72  VKDALFPTLMEPIRVVEADDENTQKTLWKLHDGTL-----LESVLMRYPDRATLCISSQA 126

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A                 + + G ++SNI
Sbjct: 127 GCGMACPFCATGQGGLDRNLSVGEIVDQVRNAA--------------ATMQAEGGRLSNI 172

Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V  ++   +     G   S+R +T+ST G  P I ++ +E + V L
Sbjct: 173 VFMGMGEPLANYKRVVSAVRQITQPSPEGFGISQRSVTVSTVGLAPAIRKLADEDMSVTL 232

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ +  ++DA R+Y   S   R++ EY +++ +ND    A
Sbjct: 233 AVSLHTPDDELRDELVPVNNRWSVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQGWRA 291

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L + L    G    +NLIP NP PG ++  S ++    F   +   G    +R  +G 
Sbjct: 292 DMLGQKLHKALGSRVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVPCTVRDTKGQ 351

Query: 357 DILAACGQLKSLSKRIPK 374
           +I AACGQL +      K
Sbjct: 352 EIAAACGQLAAEENSEEK 369


>gi|325282884|ref|YP_004255425.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus
           proteolyticus MRP]
 gi|324314693|gb|ADY25808.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus
           proteolyticus MRP]
          Length = 350

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/336 (35%), Positives = 175/336 (52%), Gaps = 22/336 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W+Y  G+  ++ M  +  E+R  L   + +   + ++   S DG+ K+L   
Sbjct: 22  FRRRQLLEWVYQHGVGSYEQMHTLPAELRAELAAGWRLNPFDDIETFRSDDGSVKYLFTL 81

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
           P        ++E VY+P   R T+CVS+ VGC   C+FC TG     RNLT  EI+ Q+L
Sbjct: 82  PD-----GRQMEAVYMPYLDRKTICVSTMVGCPARCAFCATGAMGFGRNLTPGEIVGQIL 136

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                 G  P              R+I N+V MGMGE + N+DN  ++  I      L  
Sbjct: 137 AVAGGEGIEP--------------REIRNLVFMGMGEAMLNYDNTMQAARILLHPQALGM 182

Query: 213 SKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
           SKRR+TLST G    I R+ EE  +G+ LAISLHA   + R  ++P      ++ ++ A 
Sbjct: 183 SKRRVTLSTVGIAKGIRRLAEEDDLGIKLAISLHAPDEETRQQIIPTGGANSIDEIMQAA 242

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R Y   +   RIT EY ML+GIND    A  L + L+G+ + +NLIP NPWPG  ++ S 
Sbjct: 243 RDYQAKTGR-RITMEYTMLRGINDHLWQAELLAERLEGLVSHVNLIPMNPWPGSNFVSST 301

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           ++ I  F + ++  G    +R  RG D  AACGQL 
Sbjct: 302 EEQIQAFYDLLEERGVDVSVRRSRGKDAGAACGQLA 337


>gi|15805960|ref|NP_294660.1| ribosomal RNA large subunit methyltransferase N [Deinococcus
           radiodurans R1]
 gi|81624900|sp|Q9RVT6|RLMN_DEIRA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|6458660|gb|AAF10513.1|AE001946_5 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 346

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/336 (34%), Positives = 173/336 (51%), Gaps = 22/336 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++V+G+  F  M+++   +R  L   + +     ++   S DG+ K+L   
Sbjct: 17  FRRKQLLEWVFVQGVGTFDAMTNLPAGLRAELESEYQLNPFRDIETVRSHDGSVKYLFTL 76

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                    ++E VY+P   R T+CVS+ VGC   C+FC TG     RNLT  EI+ QVL
Sbjct: 77  ND-----GRQMEAVYMPYLDRKTICVSTMVGCPARCAFCATGKMGFGRNLTPGEIVGQVL 131

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                 G  P              R+I N+V MGMGE L N++N   +  +      L  
Sbjct: 132 AVAGGEGISP--------------REIRNLVFMGMGEALLNYENSMAAARVLLHPDALGM 177

Query: 213 SKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
           SKRR+TLST G    I R+ EE  +G+ LAISLHA   + R  ++P      +E ++ A 
Sbjct: 178 SKRRVTLSTVGIAKGIRRLAEEDDLGIKLAISLHAPDEETRQQIIPTGAANSIEEIMAAA 237

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R Y  ++   R+T EY ML+G+ND    A  L   L G+ + +NLIP NPW G +++ S 
Sbjct: 238 RDYQAVTGR-RVTMEYTMLRGVNDHLWQAELLADRLDGLVSHVNLIPMNPWDGSDFVSSS 296

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           ++ I  F + ++  G    +R  RG D  AACGQL 
Sbjct: 297 EEQIQAFYDALQDRGVDVSVRRSRGKDAGAACGQLA 332


>gi|227488624|ref|ZP_03918940.1| possible Fe-S-cluster redox protein [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091518|gb|EEI26830.1| possible Fe-S-cluster redox protein [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 398

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/390 (32%), Positives = 192/390 (49%), Gaps = 32/390 (8%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             +  +      ++E  E L ++G+P    + R +QI +  Y R   D + M+D+ + VR
Sbjct: 18  RSMPPKHYADYTKDERIEILKELGLP----KFRDNQIARHYYGRFEADPELMTDLPESVR 73

Query: 62  HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             + +         V E  + DG T+K L +     +     +E+V +    R TLC+SS
Sbjct: 74  TTVGEKLFPQLMSPVRETSADDGKTQKMLWKLHDGTL-----LESVLMEYPDRATLCISS 128

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG   L RNL+  EI+ QV  A                 + + G ++S
Sbjct: 129 QAGCGMACPFCATGQGGLDRNLSTGEIVDQVRAAA--------------ATMQAKGGRLS 174

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           NIV MGMGEPL N++ V  ++   +     G   S+R ITLST G  P I R   E +  
Sbjct: 175 NIVFMGMGEPLANYNRVLSAIRQITQPSPEGFGISQRGITLSTVGLAPAIRRFAAEGLSC 234

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLH   ++LR+ LVP N ++ +  ++DA R Y   S   R++ EY +++ IND P 
Sbjct: 235 RLAVSLHTPDDELRDSLVPANNRWSIAEVLDAAREYAEASGR-RVSIEYALIRDINDQPW 293

Query: 298 DALNLIKILKG---IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            A  L K L G       +NLIP NP PG ++  S ++    F + +   G +  +R  R
Sbjct: 294 RADLLGKKLHGALGSKVHVNLIPLNPTPGSKWDASPKRVQDEFQKRVIARGVTCTVRDTR 353

Query: 355 GLDILAACGQLKSLSKRIPKVPRQEMQITG 384
           G +I AACGQL +  +R     R+  + T 
Sbjct: 354 GQEIAAACGQLAAE-ERTGAAARRAKEATA 382


>gi|289450590|ref|YP_003475435.1| 23S rRNA m2A2503 methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185137|gb|ADC91562.1| 23S rRNA m2A2503 methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 345

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/363 (32%), Positives = 182/363 (50%), Gaps = 30/363 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  +      +L        +P      R  Q+  W+  RGI     ++DIS+ +R  L
Sbjct: 3   QKPFIYDATTADLTAFCRANDVPL----YRVKQVEAWL-ARGINSPDDLTDISKSLREKL 57

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
              F+           S  D T K++ R           +E+V++  ++  ++C+S+Q G
Sbjct: 58  ASEFNFAGLVAERNIKSQLDATEKFVFRL-----ADGQCVESVFMQYRTGNSVCLSTQAG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +      RNLTA E+  QV L      +                 +IS++V
Sbjct: 113 CRMGCTFCASTGIGFGRNLTAGELTAQVALIGRHRAE-----------------RISHVV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEPL N++ V K +   ++  GL+ S R ITLST G V  I ++  E + + LAIS
Sbjct: 156 LMGIGEPLENYEEVVKFIRTVNNPQGLNISMRHITLSTCGLVDEIKKLAHENLPINLAIS 215

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++ LR+ L+PI ++YPL  LI A  +Y   +   RITFEY +   +ND  ++A  L
Sbjct: 216 LHAPNDVLRSQLMPIAKRYPLAQLIPAASYYAKQTGR-RITFEYALFADVNDRLQEAAEL 274

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            K+L G+   +NLIP N +PG  Y  S +     F + +   G ++ +R   G DI AAC
Sbjct: 275 SKLLHGLLCHVNLIPANEFPGSLYHRSSKTSTKNFLDYLTAHGITATVRRELGSDIAAAC 334

Query: 363 GQL 365
           GQL
Sbjct: 335 GQL 337


>gi|225164328|ref|ZP_03726595.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2]
 gi|224801062|gb|EEG19391.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2]
          Length = 375

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 199/380 (52%), Gaps = 29/380 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L G   + L   L + G        R  QI  W+Y +  R +  M+++S+ +R  L 
Sbjct: 7   KPFLTGETLDSLTARLREHG----EQTFRARQILDWVYKKRARSWDDMTNLSKALRAWLA 62

Query: 66  QHFSIIYPEIVDEKISCDG---TRKWLLRFPARCIGGPVEIETVYIP--------EKSRG 114
           + F +I   +V +K S D    T K LL       G    +ETV I         E SR 
Sbjct: 63  ETFVLIPAALVLDKQSHDAHDATDKLLLEL-----GDASLVETVIIRAPQDGVGLEHSRK 117

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           T+C+S+QVGC++ C+FC +G   L R+L A EI+ Q+L            ED       S
Sbjct: 118 TICISTQVGCAMACAFCASGLAGLKRDLLAGEIVAQLLHV-------CYREDARTPRARS 170

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
                 NIV+MGMGEPL N+D + ++L I +   GL    RRITLSTSG VP I ++ +E
Sbjct: 171 ELASFDNIVVMGMGEPLANYDAIVRALRIVNAEWGLGVGARRITLSTSGLVPKILKLADE 230

Query: 235 -IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
            +G+ LAISLH  ++++R  ++P+N+ +PL  LI A + +    N R +T E+++++ +N
Sbjct: 231 DLGIRLAISLHGATDEVRERIMPVNKAFPLAKLIPAVKTFSE-KNGRMVTLEFILIEEVN 289

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D+   A  L  I + + A +NLIP+N   G  +          F++ ++ +  S  +R  
Sbjct: 290 DTIEQAEALCYIARDLHAHVNLIPYNTVEGLLWKRPSLTRQERFADVLRAARVSVTLRRE 349

Query: 354 RGLDILAACGQLKSLSKRIP 373
           +G DI AACGQL+  +++  
Sbjct: 350 KGHDIDAACGQLRLKTEKER 369


>gi|118472101|ref|YP_886882.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           smegmatis str. MC2 155]
 gi|205829815|sp|A0QVE4|RLMN_MYCS2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118173388|gb|ABK74284.1| radical SAM enzyme, Cfr family protein [Mycobacterium smegmatis
           str. MC2 155]
          Length = 372

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/374 (34%), Positives = 192/374 (51%), Gaps = 21/374 (5%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             +  + L  +       A+ ++G+P      R  Q+    Y R I D Q M+D+   VR
Sbjct: 12  RAMPPQHLADLDETARAAAVTELGLPA----FRAKQLANQYYGRLIADPQQMTDLPAAVR 67

Query: 62  HLLNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             + +  F  +   + + +     TRK L R            E+V +    R T+C+SS
Sbjct: 68  DQVAEKLFPTLINPVREIQCDAGETRKTLWR-----AIDGSTFESVLMRYPQRNTVCISS 122

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG   L RNLT  EIL QV  A S +      E        + G ++S
Sbjct: 123 QAGCGMACPFCATGQGGLQRNLTTAEILEQVRAASSTMR----AEHFGRTAGTAGGGRLS 178

Query: 181 NIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           NIV MGMGEPL N++ V  ++   IA+   G   S R +T+ST G  P I ++ +E +GV
Sbjct: 179 NIVFMGMGEPLANYNRVLGAVRRIIAAPPNGFGISARSVTVSTVGLAPAIRKLADERLGV 238

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA  ++LR+ LVP+N ++ +  ++DA R+Y   +  RR++ EY +++ +ND P 
Sbjct: 239 TLALSLHAPDDELRDTLVPVNNRWKVSEVLDAARYYAD-TTGRRVSIEYALIRDVNDQPW 297

Query: 298 DALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            A  L K L G     A +N+IP NP PG E+  S +     F + ++  G S  +R  R
Sbjct: 298 RADLLGKKLHGALGPLAHVNVIPLNPTPGSEWDASPKPAEREFVKRVRERGVSCTVRDTR 357

Query: 355 GLDILAACGQLKSL 368
           G +I AACGQL + 
Sbjct: 358 GREIAAACGQLAAE 371


>gi|303228552|ref|ZP_07315380.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516799|gb|EFL58713.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 348

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 191/370 (51%), Gaps = 30/370 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L+G    EL+    +     +  + R  Q+  +IY R I  FQ M+   + +R  L+ + 
Sbjct: 4   LLGKSLVELQALFEEH----KVQKFRAKQLIDYIYHRHIFVFQDMTQFPKTLRDWLDSNC 59

Query: 69  SIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            +  P+++ + +S D  T+K LL            IE V + +    ++CVSSQVGC++ 
Sbjct: 60  IVSIPKVITQSVSPDEKTQKLLLELADHS-----RIEAVLMEQHYGNSVCVSSQVGCAMG 114

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +    L R+L+  EI+ QV+L  +L  +                  I ++V+MG 
Sbjct: 115 CVFCASTQGGLFRDLSVSEIVGQVVLFSALKQED-----------------IHSLVVMGA 157

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL N+DNV ++L +  D M    S R++T+ST G+VPNI ++ +E + + LA+SLHA 
Sbjct: 158 GEPLQNYDNVLQALKLIHDPMTFDISYRKMTISTCGWVPNIYKLADEDLPITLALSLHAT 217

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +++ R  ++P+  +Y L+ ++DA ++Y   +   RITFEY+++  IN S  +A  L  I 
Sbjct: 218 TDETRRKIMPVGSRYKLDEVLDAVKYYYEKTQR-RITFEYILIDSINVSLEEAHELGNIG 276

Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           K  P   +NLIP N            K +  F + +   G S  IR   G  I AACGQL
Sbjct: 277 KAFPNCHVNLIPVNGNEHINLYKPSSKHMNIFKDIVASYGVSVTIRKEMGDAIQAACGQL 336

Query: 366 KSLSKRIPKV 375
           K    R  ++
Sbjct: 337 KVAHGRKEEI 346


>gi|227500112|ref|ZP_03930183.1| Fe-S-cluster redox enzyme [Anaerococcus tetradius ATCC 35098]
 gi|227217827|gb|EEI83124.1| Fe-S-cluster redox enzyme [Anaerococcus tetradius ATCC 35098]
          Length = 341

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 200/370 (54%), Gaps = 31/370 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K  L     +E+E   +K G      + R  Q+++ I+V+ I DF  M+D+S+E+R  
Sbjct: 1   MTKT-LNDKSIKEIESIFIKEGY----QKFRAKQVYRQIHVKRINDFDKMTDLSKEMREK 55

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L ++++    +++ E +S  D T+K+L       I     IE V++    R T+C+SSQV
Sbjct: 56  LGENYAFPKMKLLKEFVSKLDSTKKYLFSLDDGNI-----IEAVFMDYDKRKTICISSQV 110

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC +    LVRNLTA E++ +V     + G+                  I+NI
Sbjct: 111 GCRMGCKFCASTKNGLVRNLTAGELIEEVYELERINGE------------------INNI 152

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V+MG+GEPL N+DN+ K + + +++ G   S R ITLSTSG  P I ++ + ++ V LA+
Sbjct: 153 VIMGIGEPLDNYDNIVKFIDLITNADGRDLSHRSITLSTSGLAPMIRKLADSKLDVNLAL 212

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH  ++  R   +P+  KY +E L++A  +Y   +   R++FEYV++ G+N++  D  N
Sbjct: 213 SLHYANDKKRQKFMPVANKYKIEDLLEATDYYLAKTKR-RVSFEYVVIDGVNNTDSDVDN 271

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +LK     INLIP NP     Y       +  F + + +   ++ IR   G DI A+
Sbjct: 272 LYSLLKNKNVHINLIPLNPIEEFAYNRPKSSALTEFRDKLVKRKLNATIRRSMGSDIDAS 331

Query: 362 CGQLKSLSKR 371
           CGQL++   R
Sbjct: 332 CGQLRNNYAR 341


>gi|296117650|ref|ZP_06836234.1| radical SAM enzyme, Cfr family [Corynebacterium ammoniagenes DSM
           20306]
 gi|295969381|gb|EFG82622.1| radical SAM enzyme, Cfr family [Corynebacterium ammoniagenes DSM
           20306]
          Length = 367

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 184/373 (49%), Gaps = 29/373 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L  +        E  + L ++G+P    + R  Q+ K  YV    D   M+DI +  R  
Sbjct: 19  LPPKHFADYTEAERIKILDELGLP----KFRAKQLAKHYYVHHTVDVDEMTDIPESARKD 74

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           + + F       +    + DG T K L R     +     +E+V +    R TLC+SSQ 
Sbjct: 75  IQEKFFPPLMTQIRGFSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQA 129

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+A EI+ Q+  A   +               + G +++N+
Sbjct: 130 GCGMACPFCATGQGGLDRNLSAAEIVEQLRNASKTM--------------EAEGGRLTNV 175

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V MGMGEPL N+  V  ++   +D  G   S R +T+ST G  P + ++ +E +   LAI
Sbjct: 176 VFMGMGEPLANYKRVVHAVKQFTDPDGFGMSMRNVTISTVGLAPAVRKLADEGLSCTLAI 235

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH   ++ RN LVP+N+++ ++ ++DA R+Y   ++  R++ EY +++  ND    A  
Sbjct: 236 SLHTPDDEFRNELVPVNQRWDVDEILDAARYYVDKTSR-RVSIEYALIRDKNDQDFRADM 294

Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L + L    G    +NLIP NP PG E+  S ++    F   +   G    +R  +G +I
Sbjct: 295 LGQKLHKVLGSKVHVNLIPLNPTPGSEWDASPKERQEEFVRRVIAQGVPCTVRDTKGQEI 354

Query: 359 LAACGQLKSLSKR 371
            AACGQL +  ++
Sbjct: 355 AAACGQLAAEERQ 367


>gi|315453551|ref|YP_004073821.1| putative radical-SAM-proteins [Helicobacter felis ATCC 49179]
 gi|315132603|emb|CBY83231.1| Putative radical-SAM-proteins [Helicobacter felis ATCC 49179]
          Length = 356

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 196/377 (51%), Gaps = 36/377 (9%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SL  +   E +    + G           Q + W+Y R       M ++    +  + 
Sbjct: 4   KPSLYALTLAEWQNYCTQHGFRP----FVAKQFYAWLYQRYA-SLDQMHNLPHAFKEAVC 58

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--------RGTLC 117
             F +   E+++ + S D + K+L +            E+VY+  +         + TLC
Sbjct: 59  ADFEVRPLEVLECQQSADKSVKYLFKTFD-----GHSFESVYMVMREAREGEAQEKITLC 113

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +S Q+GC + C FC T     VRNL A EI+ QV+  +      P               
Sbjct: 114 LSCQIGCKVGCVFCATAKGGFVRNLNAGEIVEQVVALKRAHQLEPT-------------- 159

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIG 236
           +  N+V MGMGEPL NF+ V  +L I S   GL+ + RRIT+STSG VP +  +G   +G
Sbjct: 160 RGINLVFMGMGEPLHNFEQVVHALEILSTHEGLNIAPRRITISTSGVVPALQTLGALNLG 219

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V LAISLHAV++ LR+ L+PIN+ Y L+ LI+A + +P L   +R+ FEY+M+K +NDS 
Sbjct: 220 VQLAISLHAVNDSLRSKLMPINKVYNLQALINALKAFP-LDKRKRVMFEYLMIKDVNDSL 278

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L+++L G+ AKINLIP+N  P  ++   + + +  F++ + + G    IR  +G 
Sbjct: 279 SHAKELLRLLNGLKAKINLIPYNSTPHSKFERPELERVQAFADFLNQKGLLCTIRISKGQ 338

Query: 357 DILAACGQLKSLSKRIP 373
           DI AACGQL+   +R+ 
Sbjct: 339 DIAAACGQLR--EQRLK 353


>gi|257066169|ref|YP_003152425.1| radical SAM enzyme, Cfr family [Anaerococcus prevotii DSM 20548]
 gi|256798049|gb|ACV28704.1| radical SAM enzyme, Cfr family [Anaerococcus prevotii DSM 20548]
          Length = 341

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 196/368 (53%), Gaps = 30/368 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ L     +ELEE   K G      + R  Q+++ I+V  + DF+ MSD+S+++R  L+
Sbjct: 2   KDKLNDKSIKELEEIFTKEGY----QKFRAKQVYRQIHVNKVNDFKLMSDLSKDMREKLS 57

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + +     ++  E +S  D T+K+L       I     IE V++    R T+C+SSQVGC
Sbjct: 58  EKYDFPKMKVEKEFVSELDSTKKYLFSLADGNI-----IEAVFMDYDKRKTICISSQVGC 112

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +      RNL+A E++ +V     L GD                  I+NIV+
Sbjct: 113 RMGCKFCASTKNGRERNLSAGELIEEVYALERLNGD------------------INNIVI 154

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG+GEPL N++N++K + I +D  G + S R ITLSTSG  P I ++ +  + V LA+SL
Sbjct: 155 MGIGEPLDNYENIRKFIEIITDEKGRNLSHRSITLSTSGLSPMIRKLADSGLDVNLAVSL 214

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H   +D R   +PI  KY +E L++A  +Y   +   R++FEYV++ G+N+   D  NL 
Sbjct: 215 HYADDDKRRKFMPIANKYSIESLMEATDYYLDRTKR-RVSFEYVVIDGVNNLDSDVSNLT 273

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +LKG    INLIP NP     Y       +  F + + +   ++ IR   G DI A+CG
Sbjct: 274 SLLKGKNVHINLIPLNPIEEFSYDRPKSTALRDFRDKLLKKKLNATIRKSMGSDIDASCG 333

Query: 364 QLKSLSKR 371
           QL++   R
Sbjct: 334 QLRNNYAR 341


>gi|325067056|ref|ZP_08125729.1| ribosomal RNA large subunit methyltransferase N [Actinomyces oris
           K20]
          Length = 370

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 181/380 (47%), Gaps = 32/380 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +     + A    G+P      R  Q+ +  +    RD   M+D+    R  L  
Sbjct: 11  RHLADLDLSGRKAACKDSGLPS----FRADQLSRHYFTHFTRDSADMTDLPAAQREQLCA 66

Query: 67  HFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               + PE++    +   DG  T K L           V +E+V +  K R TLCVSSQ 
Sbjct: 67  E---LLPELITPVRALRADGGRTIKHLWELHD-----GVRVESVLMRYKERTTLCVSSQA 118

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A                 +     ++SN+
Sbjct: 119 GCGMACPFCATGQMGLTRNLSTGEIVEQVRHAAQ---------ASAAGELTGGPARLSNV 169

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEP+ N+ NV  +L    D    G   S R IT+ST G VP I R+  E + V L
Sbjct: 170 VFMGMGEPMVNYKNVVGALHRLIDPAPEGFGLSARGITVSTVGLVPLIRRLAGEGLPVTL 229

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ L+P+N K+ +  L+DA   Y  L+  RR++ EY ++K +ND    A
Sbjct: 230 AVSLHAPDDELRDELIPVNSKWKVGELLDAAHDYF-LATGRRVSIEYALIKDMNDHAWRA 288

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L   L       A +N IP NP PG  + CS+      F + ++R+G ++ +R  RG 
Sbjct: 289 QLLADELNRRDTGWAHVNPIPLNPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGS 348

Query: 357 DILAACGQLKSLSKRIPKVP 376
           DI  ACGQL +      +V 
Sbjct: 349 DIDGACGQLATEVLNQERVK 368


>gi|326771755|ref|ZP_08231040.1| radical SAM enzyme, Cfr family [Actinomyces viscosus C505]
 gi|326637888|gb|EGE38789.1| radical SAM enzyme, Cfr family [Actinomyces viscosus C505]
          Length = 420

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 181/380 (47%), Gaps = 32/380 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +     + A    G+P      R  Q+ +  +    RD   M+D+    R  L  
Sbjct: 61  RHLADLDLSGRKAACKDSGLPS----FRADQLSRHYFTHFTRDSADMTDLPAAQREQLCA 116

Query: 67  HFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               + PE++    +   DG  T K L           V +E+V +  K R TLCVSSQ 
Sbjct: 117 E---LLPELITPVRALRADGGRTIKHLWELHD-----GVRVESVLMRYKERTTLCVSSQA 168

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A                 +     ++SN+
Sbjct: 169 GCGMACPFCATGQMGLTRNLSTGEIVEQVRHAAQ---------ASAAGELTGGPARLSNV 219

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEP+ N+ NV  +L    D    G   S R IT+ST G VP I R+  E + V L
Sbjct: 220 VFMGMGEPMVNYKNVVGALHRLIDPAPEGFGLSARGITVSTVGLVPLIRRLAGEGLPVTL 279

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ L+P+N K+ +  L+DA   Y  L+  RR++ EY ++K +ND    A
Sbjct: 280 AVSLHAPDDELRDELIPVNSKWKVGELLDAAHDYF-LATGRRVSIEYALIKDMNDHAWRA 338

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L   L       A +N IP NP PG  + CS+      F + ++R+G ++ +R  RG 
Sbjct: 339 QLLADELNRRDTGWAHVNPIPLNPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGS 398

Query: 357 DILAACGQLKSLSKRIPKVP 376
           DI  ACGQL +      +V 
Sbjct: 399 DIDGACGQLATEVLNQERVK 418


>gi|296271697|ref|YP_003654328.1| radical SAM enzyme, Cfr family [Arcobacter nitrofigilis DSM 7299]
 gi|296095872|gb|ADG91822.1| radical SAM enzyme, Cfr family [Arcobacter nitrofigilis DSM 7299]
          Length = 355

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/376 (34%), Positives = 201/376 (53%), Gaps = 42/376 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +S+     +EL+E L            R  Q++ WIY +    +  M +I  +++  L +
Sbjct: 2   QSIYDFTLDELKERLK--------PSFRAKQVYNWIYKKYANSYDEMKNIPNDLKEDLKE 53

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETV--YIPEK-----------SR 113
           +++I   +I+ ++ S DG+ K+L +           +ETV   + EK            +
Sbjct: 54  NYAIDILKIIKKEKSSDGSIKYLFKLHD-----GHTVETVFLLMREKQIGDDGVVEKGEK 108

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+C+S+QVGC + C+FC T     VRNLT  EI+ Q++  +                  
Sbjct: 109 HTVCISTQVGCKVGCTFCLTAKGGFVRNLTVGEIVAQIVNMKRDNNID------------ 156

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG- 232
               K  NIV MGMGEPL N+ N   S+ + S+  GL  ++RR T+STSG    I ++G 
Sbjct: 157 --ENKSLNIVFMGMGEPLDNYKNFVHSVKVFSEEEGLYINRRRQTVSTSGISSKIEKLGN 214

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E +G+ LAISLHAV ++LR+ L+P+N+ Y ++ +IDA + +P +   +++ FEY+++K  
Sbjct: 215 ENLGIQLAISLHAVDDELRSELIPMNKAYNIKSIIDAVKKFP-VDARKKVMFEYLVIKDK 273

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND    A  L+ +L GI AK+NLI FNP+PG  Y   + K +V F   +   G    IR 
Sbjct: 274 NDDIASAKKLLSLLDGIKAKVNLIYFNPYPGTTYQRPESKKMVEFQNYLISKGLLCTIRE 333

Query: 353 PRGLDILAACGQLKSL 368
            +GLDI AACGQLK  
Sbjct: 334 SKGLDISAACGQLKEK 349


>gi|296171525|ref|ZP_06852789.1| cfr family radical SAM enzyme [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894087|gb|EFG73848.1| cfr family radical SAM enzyme [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 367

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 186/370 (50%), Gaps = 29/370 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +  E    A+ ++ +P      R  Q+    Y R I D + M+D+   VR  + +
Sbjct: 17  RHLADLDAEGRAAAVAELRLPA----FRAKQLAHQYYGRLIADPRAMTDLPAAVRERVAE 72

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                        ++CD   TRK L R            E+V +    R T+C+SSQ GC
Sbjct: 73  -AMFPRLLTAAADVACDAGQTRKTLWRGTD-----GTTFESVLMRYPQRNTVCISSQAGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ QV  A + L D  G            G+++SN+V 
Sbjct: 127 GMACPFCATGQGGLTRNLSTAEIVEQVRSAAAALRDDFGPP----------GQRLSNVVF 176

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V  ++   ++    G   S R +T+ST G  P I ++ +E +GV LA+
Sbjct: 177 MGMGEPLANYARVVAAVRRITEPPPHGFGISARSVTVSTVGLAPAIRKLADERLGVTLAL 236

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ ++  +DA R+Y  ++   R++ EY +++ +ND P  A  
Sbjct: 237 SLHAPDDELRDTLVPVNNRWKIDEALDAARYYADVTGR-RVSVEYALIRDVNDQPWRADL 295

Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L K L    G    +NLIP NP PG E+  S +     F   ++  G S  +R  RG +I
Sbjct: 296 LGKRLHRALGPLVHVNLIPLNPTPGSEWDASPKAAEREFVRRVRAQGVSCTVRDTRGREI 355

Query: 359 LAACGQLKSL 368
            AACGQL + 
Sbjct: 356 SAACGQLAAE 365


>gi|259507523|ref|ZP_05750423.1| Cfr family radical SAM enzyme [Corynebacterium efficiens YS-314]
 gi|259164908|gb|EEW49462.1| Cfr family radical SAM enzyme [Corynebacterium efficiens YS-314]
          Length = 354

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 116/378 (30%), Positives = 184/378 (48%), Gaps = 31/378 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +       +  E+  EAL ++G+P    + R +QI +  Y R   D   M+D+ +  R  
Sbjct: 1   MPPAHFADLSDEQRIEALSELGLP----KFRLNQIARHYYGRLEADPMTMTDLPEAARAK 56

Query: 64  LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +         E +    + D  T+K L +     +     +E+V +    R TLC+SSQ 
Sbjct: 57  VKDALFPTLMEPIRVVEADDENTQKTLWKLHDGTL-----LESVLMRYPDRATLCISSQA 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A                 + + G ++SNI
Sbjct: 112 GCGMACPFCATGQGGLDRNLSVGEIVDQVRNAA--------------ATMQAEGGRLSNI 157

Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V  ++   +     G   S+R +T+ST G  P I ++ +E + V L
Sbjct: 158 VFMGMGEPLANYKRVVSAVRQITQPSPEGFGISQRSVTVSTVGLAPAIRKLADEDMSVTL 217

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ +  ++DA R+Y   S   R++ EY +++ +ND    A
Sbjct: 218 AVSLHTPDDELRDELVPVNNRWSVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQGWRA 276

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L + L    G    +NLIP NP PG ++  S ++    F   +   G    +R  +G 
Sbjct: 277 DMLGQKLHKALGSRVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVPCTVRDTKGQ 336

Query: 357 DILAACGQLKSLSKRIPK 374
           +I AACGQL +      K
Sbjct: 337 EIAAACGQLAAEENSEEK 354


>gi|239918594|ref|YP_002958152.1| radical SAM enzyme, Cfr family [Micrococcus luteus NCTC 2665]
 gi|281415191|ref|ZP_06246933.1| ribosomal RNA large subunit methyltransferase N [Micrococcus luteus
           NCTC 2665]
 gi|239839801|gb|ACS31598.1| radical SAM enzyme, Cfr family [Micrococcus luteus NCTC 2665]
          Length = 465

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 183/369 (49%), Gaps = 19/369 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +  +E +E   +IG+P      R  Q+    +     D + M+D+ ++ R  + +
Sbjct: 106 THLADLTLKERQEKAKEIGLPA----FRAKQLSVHYFEHYTTDPEQMTDLPRDKREAIAE 161

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F       V    +  G T K+L R     +     +E+V +    R TLCVSSQ GC 
Sbjct: 162 AFFPPLLTEVRRMETDRGDTIKFLWRLFDGAL-----VESVLMRYPGRVTLCVSSQAGCG 216

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RN++  EI+ Q++LA  ++    G    +         +++N+V M
Sbjct: 217 MNCPFCATGQAGLTRNMSTAEIVEQIVLANQVIAQ--GGLGGKRKDGGHDADRVTNVVFM 274

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N+  V  ++    D    GL  S R ITLST G VP I ++ EE + +  A+S
Sbjct: 275 GMGEPLANYKRVMAAVHRMVDPSPEGLGMSARNITLSTVGLVPAIRKLAEEGVPLTFALS 334

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ L+P+N ++  +  IDA   Y  ++  RR++ EY ++K +ND    A  L
Sbjct: 335 LHAPDDELRDELIPVNSRWKADEAIDAAYDYF-VATGRRVSIEYALIKDMNDHAWRADLL 393

Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K L         +N IP NP PG  +  S++     F + +  +G  + +R  RG +I 
Sbjct: 394 AKKLNARGKGWVHVNPIPLNPTPGSIWTASEKDVTREFVDRLNAAGIPTTLRDTRGKEID 453

Query: 360 AACGQLKSL 368
            ACGQL + 
Sbjct: 454 GACGQLAAE 462


>gi|237741553|ref|ZP_04572034.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13]
 gi|229429201|gb|EEO39413.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13]
          Length = 358

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 202/380 (53%), Gaps = 34/380 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN  +K +++ + +EEL E L+ +G+     +    +++ W++ +  R F  M+++S + 
Sbjct: 1   MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55

Query: 61  RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113
           R +L +   I +  ++  +IS  D T K+L     +       IETV +  K       R
Sbjct: 56  REILTEKTYIPFFNLLKHQISKIDRTEKFLFELEDKRT-----IETVLLRHKDSKNKEIR 110

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            TLCVSSQVGC + CSFC TG    +RNL+  EIL Q+                    + 
Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVER--------------RLR 156

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232
             G  ++N+V MGMGEPL N DN+ KSLSI S+  G++ SKR+IT+STSG V  I + + 
Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILL 216

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           ++I + LAISLH+  N+ R+ ++P+N+ +PLE L      Y   +   RITFEY+++   
Sbjct: 217 DKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNF 275

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351
           N S  DA  L   +      +NLIP+N   G E+     K I  F   +K     +  +R
Sbjct: 276 NISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNIRKVNVTLR 335

Query: 352 TPRGLDILAACGQLKSLSKR 371
             +G DI  ACGQL+  +K+
Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355


>gi|159462948|ref|XP_001689704.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283692|gb|EDP09442.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 358

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/369 (32%), Positives = 185/369 (50%), Gaps = 34/369 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67
           ++G    ELEE   + G P    R R  Q+ + +   G R  + ++ I +E R  LL   
Sbjct: 12  ILGRDTAELEELAARYGQP----RFRAKQLLEGVLQ-GARSVEDITTIPKEWRAQLLADG 66

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
                  +       DGTRK+LL+      G    +ETV IP + R T+CVSSQVGC + 
Sbjct: 67  VRTGRSLLHHSVGDADGTRKFLLQL-----GDGRIVETVGIPTEDRLTVCVSSQVGCPMR 121

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC TG     RNL   EI+ QVL  + L G                 R++SN+V MGM
Sbjct: 122 CTFCATGKGGFARNLAPHEIMDQVLTVQELYG-----------------RRVSNVVFMGM 164

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246
           GEPL N  +V ++    +    +      IT+ST G    I R+   ++   LA+SLHA 
Sbjct: 165 GEPLLNLPSVTRAYHGLNKQ--IGIGGAFITISTVGVPNAIRRLAGADLKATLAVSLHAP 222

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +  LR  ++P  + YP+E L++ C  Y   +   R+TFEY +L G+ND    A  L+ +L
Sbjct: 223 NQALRESIIPSAKAYPIEALLEDCAAYFKRTGR-RVTFEYTLLSGVNDEVAHAQELVALL 281

Query: 307 KGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +     + +N+IP+NP    E+    +  +  F+  ++ +G    +R  RGL+  AACGQ
Sbjct: 282 QRYNLMSHVNVIPWNPVDESEFQRPSRNRVFAFTRAVEAAGLPCTVRETRGLEAAAACGQ 341

Query: 365 LKSLSKRIP 373
           L++  ++ P
Sbjct: 342 LRNQFQKTP 350


>gi|269120621|ref|YP_003308798.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386]
 gi|268614499|gb|ACZ08867.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386]
          Length = 357

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 134/370 (36%), Positives = 203/370 (54%), Gaps = 26/370 (7%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            ++K ++ G+  + LE+ LLK+       +    QI+ W++ +   +F   S+IS+E R+
Sbjct: 10  IIEKLNISGLKYDTLEKELLKLNF----KKYNVKQIFNWLHNKMEDNFDNFSNISKENRN 65

Query: 63  LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           +L+++F I    ++D  IS  D T K+L +       G V IE+V I  K+R TLCVSSQ
Sbjct: 66  ILSKNFFIPEITLLDHLISENDNTEKFLFKLQ-----GNVLIESVLIGHKNRYTLCVSSQ 120

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC+L C FC T T K  +NL   EIL+Q    +  L                 G K+ N
Sbjct: 121 AGCALGCEFCATATMKFEKNLDISEILMQFYYVQKYLNQ--------------KGNKLDN 166

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240
           +V MGMGEP  NFDNV  S+ I +   G + SKR  T+STSG VP I +  + +  V LA
Sbjct: 167 VVFMGMGEPFLNFDNVMDSIDILNSIDGQNCSKRNFTVSTSGLVPYIEKFTDLDSQVNLA 226

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLH+V+++ R+ ++P+N+KYPL+ L  +   Y   +   RI+FEY+++   N S  DA 
Sbjct: 227 VSLHSVNDEYRSKIMPVNKKYPLKDLKKSLLAYQKKTKK-RISFEYILIDDFNCSKNDAF 285

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L K L+     +NLIP+NP  G  Y    +     F   + ++  ++ +R  +G DI A
Sbjct: 286 ELTKFLREFSCLVNLIPYNPVAGKSYATPSKTRQQEFYRILLKNNINATLRETKGQDIAA 345

Query: 361 ACGQLKSLSK 370
           ACGQLK   +
Sbjct: 346 ACGQLKVKRE 355


>gi|116626240|ref|YP_828396.1| radical SAM protein [Candidatus Solibacter usitatus Ellin6076]
 gi|123024386|sp|Q01QF9|RLMN_SOLUE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|116229402|gb|ABJ88111.1| radical SAM enzyme, Cfr family [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 356

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/361 (40%), Positives = 200/361 (55%), Gaps = 26/361 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L+GM   +L EAL            R  QI++ IY     +   +S +  ++R  L  
Sbjct: 17  QPLVGMDLTDLREALGS-----DQPGYRAKQIYEAIYRGQAANLVQISTLPAQLREDLAA 71

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
              +  PEI     S DGTR++LL+           +ETV +P+  R T+C+SSQVGC +
Sbjct: 72  RHEVGLPEIAHLYQSTDGTRRYLLKLED-----GRTVETVLMPDGERDTICISSQVGCPV 126

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC T    L R+LTA EI+ QVLL              E  +    GR   NIVMMG
Sbjct: 127 DCKFCMTALMGLERSLTAGEIVGQVLLVAR-----------ENQLRQDGGR--LNIVMMG 173

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245
            GEPL N +NV K+  I  D  G   S RR+T+ST+G +P IA +G E     LAISL+A
Sbjct: 174 QGEPLLNLENVVKATRILLDPAGFGLSPRRVTVSTAGIIPKIAELGREPVRPKLAISLNA 233

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            + + R  L+PI RKY L+ L+ AC+ YP L    ++TFEYV+L+G+ND+  DA  ++K+
Sbjct: 234 STEESRQELMPITRKYHLKDLLAACKAYP-LRPWEKLTFEYVLLRGVNDTDADARRVVKL 292

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L  + AK+NLI  NP PG  Y   D + + +F   ++R+     +R PRGLDI AACGQL
Sbjct: 293 LSNLNAKVNLIALNPGPGIPYATPDPERVASFQNIVRRA-LPCFVRKPRGLDIYAACGQL 351

Query: 366 K 366
           K
Sbjct: 352 K 352


>gi|315925829|ref|ZP_07922036.1| cfr family radical SAM enzyme [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620938|gb|EFV00912.1| cfr family radical SAM enzyme [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 384

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 197/377 (52%), Gaps = 34/377 (9%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L G+        +  +G P    + R  Q+++W+Y +        +++ +++R  L   
Sbjct: 38  NLFGLTLAGCSALMRDLGEP----KFRGRQLFEWLYGKRAMAVDACTNLPKKLRETLKTR 93

Query: 68  FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           + I + E++  +    DGT+K L+R           +ETV +      +LCVSSQVGC++
Sbjct: 94  WIIDWGEVLGVQADLEDGTKKMLIRL-----ADGECVETVLMAYDYGYSLCVSSQVGCAM 148

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +    LVRNLTA E+  Q+ L                    + G +IS +V+MG
Sbjct: 149 GCAFCASTKGGLVRNLTAGEMAAQIALVE-----------------AAEGVRISRVVVMG 191

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           +GEPL N+DN+ + + I +   G     RRIT+ST G VP I R+ +E + + LAISLH+
Sbjct: 192 IGEPLANYDNLLRFIQILN--QGFGIGMRRITVSTCGIVPMIERLADEALEINLAISLHS 249

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
               +R  ++P  R+YPL+ L+  C++Y   +   R+TFEY ++ G+ND   DA  LI +
Sbjct: 250 PDQAVREQIMPAARRYPLDRLLKTCKNYFNKTGR-RVTFEYALMAGVNDRDEDAKALIGL 308

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             G    +NLI  NP     +  S  +++  F++ +K  G +  IR   G +I AACGQL
Sbjct: 309 FSGENVHLNLIRLNPITDGPFAGS--QNVTGFAKKLKTGGINCTIRRRIGKNIDAACGQL 366

Query: 366 KSLSKR-IPKVPRQEMQ 381
           +   ++ +P V +   +
Sbjct: 367 RHRQEQAVPMVTKPRGE 383


>gi|227543228|ref|ZP_03973277.1| possible Fe-S-cluster redox protein [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181037|gb|EEI62009.1| possible Fe-S-cluster redox protein [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 398

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/390 (32%), Positives = 191/390 (48%), Gaps = 32/390 (8%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             +  +      ++E  E L ++G+P    + R +QI +  Y R   D   M+D+ + VR
Sbjct: 18  RSMPPKHYADYTKDERIEILKELGLP----KFRDNQIARHYYGRFEADPGLMTDLPESVR 73

Query: 62  HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             + +         V E  + DG T+K L +     +     +E+V +    R TLC+SS
Sbjct: 74  TTVGEKLFPQLMSPVRETSADDGKTQKMLWKLHDGTL-----LESVLMEYPDRATLCISS 128

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG   L RNL+  EI+ QV  A                 + + G ++S
Sbjct: 129 QAGCGMACPFCATGQGGLDRNLSTGEIVDQVRAAA--------------ATMQAKGGRLS 174

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           NIV MGMGEPL N++ V  ++   +     G   S+R ITLST G  P I R   E +  
Sbjct: 175 NIVFMGMGEPLANYNRVLSAIRQITQPSPEGFGISQRGITLSTVGLAPAIRRFAAEGLSC 234

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLH   ++LR+ LVP N ++ +  ++DA R Y   S   R++ EY +++ IND P 
Sbjct: 235 RLAVSLHTPDDELRDSLVPANNRWSIAEVLDAAREYAEASGR-RVSIEYALIRDINDQPW 293

Query: 298 DALNLIKILKG---IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            A  L K L G       +NLIP NP PG ++  S ++    F + +   G +  +R  R
Sbjct: 294 RADLLGKKLHGALGSKVHVNLIPLNPTPGSKWDASPKRVQDEFQKRVIARGVTCTVRDTR 353

Query: 355 GLDILAACGQLKSLSKRIPKVPRQEMQITG 384
           G +I AACGQL +  +R     R+  + T 
Sbjct: 354 GQEIAAACGQLAAE-ERTGAAARRAKEATA 382


>gi|194700820|gb|ACF84494.1| unknown [Zea mays]
          Length = 409

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/363 (38%), Positives = 202/363 (55%), Gaps = 26/363 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHL 63
           K  L GM   ELE  +   G       M    +WK +Y   +    +  ++ ++++ R +
Sbjct: 49  KAMLKGMDYSELENWVQAQGFRPGQAMM----LWKCLYGNNVWAHCYDELAGLNKDFRKM 104

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122
           + +H  +    + D  I+ DGTRK L       +     IETV IP  + R T+CVSSQV
Sbjct: 105 ITEHADLKALTMKDIHIASDGTRKILFSLEDGSV-----IETVIIPCARGRTTICVSSQV 159

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C FC+TG   L ++L+  EI+ Q + AR L  D  G               I+N+
Sbjct: 160 GCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDELGS--------------INNV 205

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MGMGEP  N DNV K+ +I  D  GL FS R++T+STSG VP + R  +E    LA+S
Sbjct: 206 VFMGMGEPFHNIDNVIKASAIMVDEQGLHFSPRKVTVSTSGLVPQLKRFLQESNCSLAVS 265

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+A ++++RN ++PINRKY L +L+   R    L   + + FEYVML G+NDS  DA  L
Sbjct: 266 LNATTDEVRNWIMPINRKYNLNLLLGTLREELNLRQKQIVLFEYVMLSGVNDSMDDAKRL 325

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           I++++GIP KINLI FNP  G ++  +    I+ F   + + G +  +R  RG D +AAC
Sbjct: 326 IELVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLTVFVRLSRGDDQMAAC 385

Query: 363 GQL 365
           GQL
Sbjct: 386 GQL 388


>gi|120403214|ref|YP_953043.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           vanbaalenii PYR-1]
 gi|205829819|sp|A1T787|RLMN_MYCVP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|119956032|gb|ABM13037.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 365

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 182/374 (48%), Gaps = 30/374 (8%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             +       +       A+ ++G+P      R  Q+    Y R I D   M+D+   VR
Sbjct: 14  RAMPPRHFADLDESGRAAAVAELGLPA----FRAKQLANQYYGRLIADPTQMTDLPAAVR 69

Query: 62  HLLNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             +    F  ++    + +     TRK L R            E+V +    R T+C+SS
Sbjct: 70  ERVADALFPTLFGAAREIECDSGETRKVLWR-----AVDGTTFESVLMRYPDRNTVCISS 124

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG   L RNL+  EIL QV  A + L D  G              ++S
Sbjct: 125 QAGCGMACPFCATGQGGLKRNLSTAEILEQVRAASAELRDRDGG-------------RLS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           N+V MGMGEPL N++ V  ++   +     G   S R +T+ST G  P I ++ +E + V
Sbjct: 172 NVVFMGMGEPLANYNRVVAAVRRITASSPNGFGISARSVTVSTVGLAPAIRKLADEKLNV 231

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLH   ++LR+ LVP+N ++ ++ ++DA R+Y  ++   R++ EY +++ +ND P 
Sbjct: 232 TLALSLHTPDDELRDTLVPVNNRWKVDEVLDAARYYADVTGR-RVSIEYALIRDVNDQPW 290

Query: 298 DALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            A  L K L G       +NLIP NP PG E+  S +     F   ++  G S  +R  R
Sbjct: 291 RADLLGKKLHGELGPLVHVNLIPLNPTPGSEWDASPKPVEREFVRRVRAKGVSCTVRDTR 350

Query: 355 GLDILAACGQLKSL 368
           G +I AACGQL + 
Sbjct: 351 GREIAAACGQLAAE 364


>gi|317056479|ref|YP_004104946.1| radical SAM enzyme, Cfr family [Ruminococcus albus 7]
 gi|315448748|gb|ADU22312.1| radical SAM enzyme, Cfr family [Ruminococcus albus 7]
          Length = 348

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/344 (34%), Positives = 183/344 (53%), Gaps = 26/344 (7%)

Query: 29  RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRK 87
              + R  QI++W++V+ +  F  M+++S ++R  L + F +    IV    S  D T K
Sbjct: 28  GEKKFRAKQIFEWLHVKRVDSFDKMTNLSVQLREKLKKIFCLKSLFIVKRLESNTDNTVK 87

Query: 88  WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
           +L R P         +ETV +      T+CVS+QVGC + C FC +      R+L + EI
Sbjct: 88  YLYRLPD-----GNHVETVIMEYNYGNTVCVSTQVGCKMGCRFCASTIAGYKRDLASSEI 142

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
           LLQ+  A                     GRKI+  V+MG+GEP+ NFDNV   L + S  
Sbjct: 143 LLQIYEAAR-----------------DSGRKITGAVLMGIGEPMDNFDNVVNFLKVLSCE 185

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
            G + S R +++ST G VP I  + E  +G+ L++SLHA +N  R+ ++P+N +Y +  L
Sbjct: 186 QGTNMSLRHVSVSTCGIVPRIYELAEMKLGITLSVSLHASNNKARSEIMPVNNRYDIGEL 245

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           + ACR+Y  ++   RI+FEY ++ G ND   DA  L  +LK     +N+IP N      Y
Sbjct: 246 MTACRYYFKVTGR-RISFEYALIDGHNDKQSDAEELAALLKNFVCHVNIIPVNKIKERNY 304

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
             SD+K    F + +++ G ++ +R   G DI AACGQL+   +
Sbjct: 305 -RSDRKAADRFRQRLEKLGLNATVRRTLGSDIDAACGQLRREYE 347


>gi|282890654|ref|ZP_06299177.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499651|gb|EFB41947.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 350

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 192/368 (52%), Gaps = 27/368 (7%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  EEL+  L  +            Q+  W+Y +GI D+  M++IS +++ LL    S+ 
Sbjct: 7   MTEEELKTLLTSL----DQKPFHAKQLIDWVYGKGIIDWNEMTNISTDLKKLLQSQISLS 62

Query: 72  YPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
           + ++V  K S D  T K+L R     +     +E+V I    R T+CVSSQVGC   C+F
Sbjct: 63  HLQLVHVKPSADLETYKFLWRLKDNKL-----VESVLICSGDRRTVCVSSQVGCPAKCAF 117

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +G Q   RNL   EI+ QV L    L D                 ++S++V MGMGEP
Sbjct: 118 CASGKQGFFRNLRPHEIVEQVFLINQWLKD--------------KNERVSHVVYMGMGEP 163

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSND 249
           L N+D V KS+ + S+   L+ S+RRIT+ST G V  I R+  EE+ V L +SLHA +  
Sbjct: 164 LKNYDPVIKSIRLLSNPELLNLSQRRITVSTVGIVEGIKRLSREELKVSLVLSLHAPNQH 223

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           +R  ++P  RKYPL+ +++A   Y  L+    ITFEY ++ GIND P  A  L  +L G 
Sbjct: 224 IRQKIIPYARKYPLDAIMEAMDEYAKLTKRD-ITFEYTLIAGINDHPDHAFELTHLLHGK 282

Query: 310 -PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
               +NLIP+NP PG      ++K I  F   +  +   +  R  +G DI AACGQL   
Sbjct: 283 SQFTVNLIPYNPVPGLRLKRPEKKAIKQFRAVLFGAKVVNTCRYTKGDDIAAACGQLALQ 342

Query: 369 SKRIPKVP 376
                K+ 
Sbjct: 343 ELEKEKIA 350


>gi|289706145|ref|ZP_06502515.1| radical SAM enzyme, Cfr family [Micrococcus luteus SK58]
 gi|289557139|gb|EFD50460.1| radical SAM enzyme, Cfr family [Micrococcus luteus SK58]
          Length = 465

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 183/369 (49%), Gaps = 19/369 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +  +E +E   +IG+P      R  Q+    +     D + M+D+ ++ R  + +
Sbjct: 106 THLADLTLKERQEKAKEIGLPA----FRAKQLSVHYFEHYTTDPEQMTDLPRDKREAIAE 161

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F       V    +  G T K+L R     +     +E+V +    R TLCVSSQ GC 
Sbjct: 162 AFFPPLLTEVRRMETDRGDTVKFLWRLFDGAL-----VESVLMRYPGRVTLCVSSQAGCG 216

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RN++  EI+ Q++LA  ++    G    +         +++N+V M
Sbjct: 217 MNCPFCATGQAGLTRNMSTAEIVEQIVLANQVIA--AGGLGGKRKDGGHDADRVTNVVFM 274

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N+  V  ++    D    GL  S R ITLST G VP I ++ EE + +  A+S
Sbjct: 275 GMGEPLANYKRVMAAVHRMVDPSPEGLGMSARNITLSTVGLVPAIRKLAEEGVPLTFALS 334

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ L+P+N ++  +  IDA   Y  ++  RR++ EY ++K +ND    A  L
Sbjct: 335 LHAPDDELRDELIPVNSRWKADEAIDAAYDYF-VATGRRVSIEYALIKDMNDHAWRADLL 393

Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K L         +N IP NP PG  +  S++     F + +  +G  + +R  RG +I 
Sbjct: 394 AKKLNARGKGWVHVNPIPLNPTPGSIWTASEKDVTREFVDRLNAAGIPTTLRDTRGKEID 453

Query: 360 AACGQLKSL 368
            ACGQL + 
Sbjct: 454 GACGQLAAE 462


>gi|68536246|ref|YP_250951.1| hypothetical protein jk1169 [Corynebacterium jeikeium K411]
 gi|123650875|sp|Q4JV24|RLMN_CORJK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|68263845|emb|CAI37333.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
          Length = 365

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 190/374 (50%), Gaps = 31/374 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +    +  +  E L+E + ++G+P    + R  QI +  Y R   D   M+D+ +  R  
Sbjct: 16  MPPVHMADLDEETLKERVQELGLP----KFRADQIRRQYYGRLQGDPMEMTDLPESKRAA 71

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           + +       + +    + DG TRK L R     +     +E+V +    R TLC+SSQ 
Sbjct: 72  VKEALFPELMQPMRNMDADDGETRKTLWRLHDGTM-----LESVLMRYPGRATLCISSQA 126

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  E++ Q   A S + +               G ++SNI
Sbjct: 127 GCGMACPFCATGQGGLDRNLSVGEMVEQARAAASTMQE--------------EGGRLSNI 172

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEPL N+  V +++   S     G   S+R IT+ST G  P I ++  EE+ V L
Sbjct: 173 VFMGMGEPLANYKRVVETIRKVSAPAPDGFGISQRNITVSTVGLAPAIRKLADEEMKVRL 232

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ +E ++DA R+Y   S   R++ EY +++ +ND P  A
Sbjct: 233 AVSLHTPDDELRDELVPVNNRWSVEEVLDAARYYADTSGR-RVSIEYALIRDMNDQPWRA 291

Query: 300 LNLIKILKG---IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L+G       +NLIP NP PG ++  S +     F   ++  G    +R  +G 
Sbjct: 292 DLLGKKLRGALGTKVHVNLIPLNPTPGSKWDASPKDRQDEFVRRVEAQGVPCTVRDTKGQ 351

Query: 357 DILAACGQLKSLSK 370
           +I AACGQL +  +
Sbjct: 352 EIAAACGQLAAEER 365


>gi|111225135|ref|YP_715929.1| ribosomal RNA large subunit methyltransferase N [Frankia alni
           ACN14a]
 gi|122953799|sp|Q0RDQ8|RLMN_FRAAA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|111152667|emb|CAJ64408.1| Fe-S-cluster redox enzyme [Frankia alni ACN14a]
          Length = 419

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 186/378 (49%), Gaps = 28/378 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLL 64
             L  + R+E  +  + +G P      R  Q+ +  + R +   +   M+D+ +  R   
Sbjct: 33  RHLADLSRDERRQVAVALGQPA----FRADQVSRHYFARLVDADETDAMTDLPENARGP- 87

Query: 65  NQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
                +    +    +SCD   TRK   R     +     +E+V +    R T+CVSSQ 
Sbjct: 88  LLEALLPRLLVPARTLSCDDGLTRKTAWRTADGAL-----LESVIMRYPDRATVCVSSQA 142

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV+ A  +L             +     ++SN+
Sbjct: 143 GCGMGCPFCATGQGGLTRNLSTAEIVEQVVHAARVLR---------RQELAGGQGRLSNV 193

Query: 183 VMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEPL N+  V  +L   IA    GL  S R +T+ST G VP + R+  E + V L
Sbjct: 194 VFMGMGEPLANYTAVTAALRRLIAPSPEGLGLSARGLTVSTVGLVPAMRRLAGEGLPVTL 253

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ LVPIN ++P+  ++ A   Y  ++   R++ EY ++ G+ND    A
Sbjct: 254 AVSLHAPDDELRDELVPINTRWPVAEVLAAAWEYAEVTGR-RVSIEYALIDGVNDDVARA 312

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L  +L G  A +NLIP NP  G  +  S       F   ++  G ++ +R  RG +I 
Sbjct: 313 DALATLLAGRLAHVNLIPLNPTEGSSWQASAPAGQRAFVRRLRERGIATTVRDTRGREIA 372

Query: 360 AACGQLKSL-SKRIPKVP 376
           AACGQL +  + R  +V 
Sbjct: 373 AACGQLAAEPAGRARRVE 390


>gi|325680303|ref|ZP_08159863.1| 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8]
 gi|324108012|gb|EGC02268.1| 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8]
          Length = 348

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 202/367 (55%), Gaps = 30/367 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  ++G+M EELEE +L IG      + R  QI++W++V+ +  F  M+++S ++R  L 
Sbjct: 9   RIDILGLMPEELEEQILLIG----EKKFRAKQIFEWLHVKRVDSFDKMTNLSVQLRDKLK 64

Query: 66  QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + F +    IV    S  D T K+L R P         +E+V +      T+CVS+QVGC
Sbjct: 65  KIFCLKSLFIVKRLESNTDNTVKYLYRLPD-----GNHVESVIMEYNHGNTVCVSTQVGC 119

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC +      R+L+A EILLQ+  A                     GRKI   V+
Sbjct: 120 KMGCKFCASTIAGYKRDLSASEILLQIYEAER-----------------DSGRKIGGAVL 162

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MG+GEPL N+DNV   L + S   G++ S R +++ST G VP I  + E ++G+ L++SL
Sbjct: 163 MGIGEPLDNYDNVVGFLKVLSCEAGMNMSLRHVSVSTCGLVPRIYELAELKLGITLSVSL 222

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N  R+ ++P+N +Y +  L+ ACR+Y  ++   RI+FEY ++ G NDS   A  L 
Sbjct: 223 HATNNRARSEIMPVNNRYDIAELMAACRYYFKVTGR-RISFEYALIDGHNDSQAAAEELA 281

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L+G    +N+IP N     +Y  SD+K  + F + ++  G ++ +R   G DI AACG
Sbjct: 282 ALLRGFTCHVNIIPVNKIKERDY-RSDRKAAMRFQKRLEALGLNATVRRTLGADIDAACG 340

Query: 364 QLKSLSK 370
           QL+   +
Sbjct: 341 QLRREYE 347


>gi|254819036|ref|ZP_05224037.1| hypothetical protein MintA_03871 [Mycobacterium intracellulare ATCC
           13950]
          Length = 367

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 189/371 (50%), Gaps = 27/371 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +  +    A+ ++G+P      R  Q+    Y R I D + M+D+   +R  +  
Sbjct: 17  RHLADLDADGRAAAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAGLRDAIAD 72

Query: 67  H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F I+   + +       TRK L R         V +E+V +    R T+C+SSQ GC 
Sbjct: 73  TMFPILLTAVSEVACDAGETRKTLWRALD-----GVTVESVLMRYPQRNTVCISSQAGCG 127

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EIL QV  A ++L D  G             +++SN+V M
Sbjct: 128 MACPFCATGQGGLSRNLSTAEILEQVRAAAAVLRDDFGPPS----------QRLSNVVFM 177

Query: 186 GMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N+  V  ++   IA+   G   S R +T+ST G  P I ++ +E + V LA+S
Sbjct: 178 GMGEPLANYARVVAAVRRIIAAPPHGFGISARSVTVSTVGLAPAIRKLADEGLAVTLALS 237

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVP+N ++ +   +DA R+Y  ++   R++ EY +++ +ND P  A  L
Sbjct: 238 LHAPDDELRDTLVPVNNRWKIAEALDAARYYADVTGR-RVSVEYALIRDVNDQPWRADLL 296

Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            + L    G    +NLIP NP PG E+  S +     F   ++  G S  +R  RG +I 
Sbjct: 297 GQRLHRALGPLVHVNLIPLNPTPGSEWDASPKAVEREFVRRVRAKGVSCTVRDTRGREIS 356

Query: 360 AACGQLKSLSK 370
           AACGQL   ++
Sbjct: 357 AACGQLAFENR 367


>gi|227503385|ref|ZP_03933434.1| possible Fe-S-cluster redox protein [Corynebacterium accolens ATCC
           49725]
 gi|306836373|ref|ZP_07469351.1| cfr family radical SAM enzyme [Corynebacterium accolens ATCC 49726]
 gi|227075888|gb|EEI13851.1| possible Fe-S-cluster redox protein [Corynebacterium accolens ATCC
           49725]
 gi|304567733|gb|EFM43320.1| cfr family radical SAM enzyme [Corynebacterium accolens ATCC 49726]
          Length = 374

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 185/374 (49%), Gaps = 31/374 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L  +    +   E  + L +IG+P    + R  QI K  Y     D + M+DI    R  
Sbjct: 20  LPPKHFADLSESERIDKLAEIGLP----KFRAKQIAKHYYEHLTDDVEEMTDIPAGKREE 75

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           + + F     + +    + DG T K L R     +     +E+V +    R TLC+SSQ 
Sbjct: 76  VKEAFFPELMKPIRTTSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQA 130

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ Q                     + + G ++SN+
Sbjct: 131 GCGMACPFCATGQGGLDRNLSTGEIVEQFRH--------------AAAAMAAEGGRLSNV 176

Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V +++   +  D  G   S+R +T+ST G  P I ++ +E +   L
Sbjct: 177 VFMGMGEPLANYKRVVQAVRQITGQDGTGFGLSQRNVTVSTVGLAPAIRKLADEDLACTL 236

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ ++ ++DA R+Y   S ARR++ EY +++  ND    A
Sbjct: 237 AVSLHTPDDELRDSLVPVNNRWSVDEVLDAARYYADKS-ARRVSIEYALIRDKNDQDFRA 295

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L + L    G    +N+IP NP PG E+  + +  +  F   ++  G    +R  +G 
Sbjct: 296 DMLGRKLHQKLGSKVHVNVIPLNPTPGSEWDAAPKARLNEFVRRVQAQGVPCTVRDTKGD 355

Query: 357 DILAACGQLKSLSK 370
           +I AACGQL +  +
Sbjct: 356 EIAAACGQLAADER 369


>gi|163782714|ref|ZP_02177710.1| hypothetical protein HG1285_15301 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881835|gb|EDP75343.1| hypothetical protein HG1285_15301 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 349

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/365 (38%), Positives = 196/365 (53%), Gaps = 33/365 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           +     EEL E  + +G+     + R  Q+ KW+Y +   DF  M+D+ +E R LL   F
Sbjct: 4   ITDYNLEELRERFVSLGLE----KYRAGQVLKWLYKKLTTDFSSMTDLPKEQRRLLEDTF 59

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
                E +D   + D +RK+L R     I     +ETV I E+   TLCVSSQVGC++ C
Sbjct: 60  RFHPLEKLDRVDAPD-SRKYLFRTHDGHI-----VETVLIRERDHLTLCVSSQVGCAVGC 113

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
           +FC T    L RNLT+ EIL Q L  +                      KI N+V MGMG
Sbjct: 114 TFCATAIDGLRRNLTSAEILDQFLQVQK-----------------DSPEKIRNVVFMGMG 156

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHA 245
           EPL N+DNV+K+  I     GL  SKRR+T+STSG V  + R+ E+     + LA+SL+A
Sbjct: 157 EPLANYDNVRKAAEIMVSPWGLDLSKRRVTVSTSGLVAQLRRMAEDPIMRELNLAVSLNA 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  ++PI RK  L  L++    YP L   RRIT EYV++K +NDS RDA  L ++
Sbjct: 217 PRQSTRESIMPITRKNTLSELMEVLVKYP-LPRYRRITLEYVLIKDLNDSKRDAEELAEL 275

Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           L+      K+NLIPFNP P   Y   +   ++ F + +   G S+ +R  +G+D+  ACG
Sbjct: 276 LRRHRKRFKVNLIPFNPDPNLPYERPELTRVLNFQKVLWERGISTFVRFSKGVDVFGACG 335

Query: 364 QLKSL 368
           QL++ 
Sbjct: 336 QLRAK 340


>gi|297571184|ref|YP_003696958.1| radical SAM enzyme, Cfr family [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931531|gb|ADH92339.1| radical SAM enzyme, Cfr family [Arcanobacterium haemolyticum DSM
           20595]
          Length = 426

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 185/379 (48%), Gaps = 27/379 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + +  + R E    +  +G PQ     R  QI K  +     D + M+D+    R  + Q
Sbjct: 31  KHMADLTRAERRALVADLGYPQ----FRADQISKHYFEHDCADPEKMTDLPAAQRKEITQ 86

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                    V ++++  G T K L +     +     +E+V +    R TLC+SSQ GC 
Sbjct: 87  VLLPQLMTKVKDQVADKGATIKTLWKLFDGAV-----VESVLMKYPQRATLCISSQAGCG 141

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EI+ Q+  AR L       E +          +++N+V M
Sbjct: 142 MACPFCATGQAGLTRNLSTAEIIEQLRYARELAASGIFGEPV----------RVTNVVFM 191

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL NF  V+ +L    +    G   S R IT+ST G VP I ++ +E + V LA+S
Sbjct: 192 GMGEPLANFPAVRGALRRMIEPAPEGFGMSARNITVSTVGMVPVINKLADEGLPVTLAVS 251

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  + LR+ L+PIN +Y +  L+DA RHY   +   R++ EY ++K +ND    A  L
Sbjct: 252 LHAPDDALRDDLIPINSRYKVGELLDAARHYFVRTGR-RVSIEYALIKDMNDHEWRAELL 310

Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
              L       A +N IP NP PG  + CS  +   TF   +  +G S+ IR  RG DI 
Sbjct: 311 AAELNSRGHGWAHVNPIPLNPTPGSIWTCSTPETTRTFVRTLSDAGISTTIRDTRGSDID 370

Query: 360 AACGQLKSLSKRIPKVPRQ 378
            ACGQL +       V R+
Sbjct: 371 GACGQLAAEVVDREHVSRR 389


>gi|118617647|ref|YP_905979.1| hypothetical protein MUL_2078 [Mycobacterium ulcerans Agy99]
 gi|205829818|sp|A0PQ89|RLMN_MYCUA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|118569757|gb|ABL04508.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 364

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 185/370 (50%), Gaps = 32/370 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L     E    A+  +G+P      R  Q+    Y R I D + M+D+   VR  + +
Sbjct: 17  RHLADFDAEGRASAVAALGLPP----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDQIAE 72

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                       +++CD   TRK L R         V +E+V +    R T+C+SSQ GC
Sbjct: 73  TMFPNLLT-AAREVTCDAGQTRKTLWR-----ATDGVTVESVLMRYPQRNTVCISSQAGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ QV  A + L D               G ++SN+V 
Sbjct: 127 GMACPFCATGQGGLTRNLSTAEIVEQVRAAAAALRD-------------EFGDRLSNVVF 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MG+GEPL N+  V  ++   ++    G   S R +T+ST G  P I ++ +E +GV LA+
Sbjct: 174 MGLGEPLANYARVLAAVRRITEPPPTGFGISARSVTVSTVGLAPAIRKLADERLGVTLAL 233

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +   ++A  +Y  ++   R++ EY +++ +ND P  A  
Sbjct: 234 SLHAPDDELRDTLVPVNNRWKISEALEAAHYYAEVTGR-RVSVEYALIREVNDQPWRADL 292

Query: 302 LIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L K L G       +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I
Sbjct: 293 LGKRLHGALGPLVHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAQGVSCTVRDTRGREI 352

Query: 359 LAACGQLKSL 368
            AACGQL + 
Sbjct: 353 SAACGQLAAE 362


>gi|154485074|ref|ZP_02027522.1| hypothetical protein EUBVEN_02797 [Eubacterium ventriosum ATCC
           27560]
 gi|149734027|gb|EDM50146.1| hypothetical protein EUBVEN_02797 [Eubacterium ventriosum ATCC
           27560]
          Length = 320

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/347 (34%), Positives = 190/347 (54%), Gaps = 29/347 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   +K+ +     +EL++ L  +G        R  QI+KWI++  ++ F  M++IS+ +
Sbjct: 1   MVMTEKKDIKSYNLDELKQELANMG----EKPFRAGQIYKWIHIEKVQSFDEMTNISKNL 56

Query: 61  RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           R  L++ F I+  E V   IS  DGTRK+L R     I G   IE+V +      ++C+S
Sbjct: 57  RETLDEQFEIVTLEPVRVLISKIDGTRKYLFR-----IKGGAVIESVLMRYHHGNSVCIS 111

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +Q GC + C FC +    L RNL   E+L Q+      +G+                 ++
Sbjct: 112 TQSGCRMGCRFCASTLNGLDRNLRPSELLEQIYEIEKNIGE-----------------RV 154

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238
           SNIV+MG GEPL NF+NV K L + SD  GL+ S+R ITLST G VP +  +      + 
Sbjct: 155 SNIVLMGSGEPLDNFENVTKFLELISDENGLNISQRNITLSTCGLVPRMKELANMHPQIT 214

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  +D R  L+PI RKY +  ++DAC++Y   +   RITFEY ++ G+ND+  +
Sbjct: 215 LALSLHASDDDTRRELLPIARKYTIAEVLDACKYYFDKTGR-RITFEYSLVAGVNDTVEE 273

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
           A  L  ++K +   +NLIP NP    +++ + +K +  F   +++ G
Sbjct: 274 AEKLSALVKNLNCHVNLIPVNPIKERDFVQTGKKAVERFKRVLEKIG 320


>gi|46446329|ref|YP_007694.1| hypothetical protein pc0695 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399970|emb|CAF23419.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 330

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/334 (37%), Positives = 179/334 (53%), Gaps = 22/334 (6%)

Query: 39  WKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCI 97
             WIY +G+  +  MS++SQ +R  L +H  +   E+V    S D  T K+L R     +
Sbjct: 1   MSWIYQKGVLSWDKMSNLSQSLREKLAKHIRLPVLELVRYTESIDQETIKFLWRLRDGNL 60

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
                +E+V I    R T+CVSSQVGC   C+FC +G Q   RNL   EI+ Q+L   + 
Sbjct: 61  -----VESVLILSGIRRTVCVSSQVGCPAKCAFCASGQQGFFRNLRPTEIIEQILQINAW 115

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
                         + S G K+S++V MGMGEPL N+++V  S+ + S     + S+RRI
Sbjct: 116 --------------LSSKGEKVSHVVYMGMGEPLKNYESVVASIRVLSHPDFCNISQRRI 161

Query: 218 TLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           T+ST G V  I R+ +E + V L +SLHA +  +R  ++P  RKYPLE ++++   Y   
Sbjct: 162 TVSTVGVVEGIKRLSKEGLKVNLVLSLHAPNQHIRKKIIPYARKYPLEEILESMDEYAQK 221

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336
           +    ITFEY +L GIND P  A  L  +LKG    +NLIP+NP PG      ++K I  
Sbjct: 222 TKRD-ITFEYTLLAGINDHPDHAHELAHLLKGKQCTVNLIPYNPIPGLRLKRPEKKAIKQ 280

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           F   +  S   +  R  +G DI AACGQL    +
Sbjct: 281 FRSVLYGSHIVNTCRYTKGDDIGAACGQLALQER 314


>gi|320532046|ref|ZP_08032934.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320135737|gb|EFW27797.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 391

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 180/380 (47%), Gaps = 32/380 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +     + A    G+P      R  Q+ +  +    R    M+D+    R  L  
Sbjct: 32  RHLADLDLAGRKAACKDSGLPS----FRADQLSRHYFTHFTRHSADMTDLPAAQREQLCA 87

Query: 67  HFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               + PE++    +   DG  T K L           V +E+V +  K R TLCVSSQ 
Sbjct: 88  E---LLPELITPVRALRADGGRTIKHLWELHD-----GVRVESVLMRYKERTTLCVSSQA 139

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A                 +     ++SN+
Sbjct: 140 GCGMACPFCATGQMGLTRNLSTGEIVEQVRHAAQ---------ASAAGELTGGPARLSNV 190

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEP+ N+ NV  +L    D    G   S R IT+ST G VP I R+  E + V L
Sbjct: 191 VFMGMGEPMVNYKNVVGALHRLIDPAPEGFGLSARGITVSTVGLVPLIRRLAGEGLPVTL 250

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ L+P+N K+ +  L+DA   Y  L+  RR++ EY ++K +ND    A
Sbjct: 251 AVSLHAPDDELRDELIPVNSKWKVGELLDAAHDYF-LATGRRVSIEYALIKDMNDHAWRA 309

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L   L       A +N IP NP PG  + CS+      F + ++R+G ++ +R  RG 
Sbjct: 310 QLLADELNRRDTGWAHVNPIPLNPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGS 369

Query: 357 DILAACGQLKSLSKRIPKVP 376
           DI  ACGQL +      +V 
Sbjct: 370 DIDGACGQLATEVLNQERVK 389


>gi|298705390|emb|CBJ28680.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 335

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/344 (35%), Positives = 182/344 (52%), Gaps = 26/344 (7%)

Query: 29  RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88
              + R  Q+ KWI+  G   F+ M++I + +R  L +  ++   E+   ++S DGT+K 
Sbjct: 2   GEPKFRAKQVLKWIFEGGAESFEDMANIPKTLRAKLAKVATVGALEVAARQVSKDGTKKL 61

Query: 89  LLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
             R     I     IE+V +P    R T C+SSQ GC++ C FC TG     R L+A EI
Sbjct: 62  AYRLSDGQI-----IESVLMPYSDGRRTACISSQAGCAMGCVFCATGQMGFKRQLSAAEI 116

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
             Q                     +   G ++SN+V MGMGEPL N+ NV +++   +  
Sbjct: 117 FEQAYRF--------------SQELQKRGDRLSNVVFMGMGEPLANYKNVMEAVRRINTE 162

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
             L    R IT+ST G VP I R+ +E I V LA+SLHA ++  R  L+P+NR++PL  L
Sbjct: 163 --LGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERGALLPVNRRFPLSEL 220

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC 324
           +DACR Y  +S   R+TFE+ +++G NDS   A  L ++L+ +     +N+IP NP  G 
Sbjct: 221 MDACREYVDVSGR-RMTFEWALIQGENDSAEVASELGRLLRPLKGMCHVNIIPLNPTDGY 279

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +   S    +  F E + ++G  +  R  RG+DI A CGQL + 
Sbjct: 280 KGGPSMADAVNQFVEVLAKNGVPATPRIRRGIDIDAGCGQLTAK 323


>gi|41409041|ref|NP_961877.1| hypothetical protein MAP2943c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81571119|sp|Q73VR8|RLMN_MYCPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|41397400|gb|AAS05260.1| hypothetical protein MAP_2943c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 364

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/369 (32%), Positives = 183/369 (49%), Gaps = 30/369 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +  +    A+ ++G+P      R  Q+    Y R I D + M+D+   +R  +  
Sbjct: 17  RHLADLDADGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAGLRDAIAD 72

Query: 67  H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F I+     +       TRK L R         V +E+V +    R T+C+SSQ GC 
Sbjct: 73  TMFPILLTAASEVTCDAGQTRKTLWRALD-----GVTVESVLMRYPHRNTVCISSQAGCG 127

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EIL QV    + L D               G ++SN+V M
Sbjct: 128 MACPFCATGQGGLSRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 174

Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N+  V  ++         G   S R +T+ST G  P I ++ +E +GV LA+S
Sbjct: 175 GMGEPLANYARVVAAVRRIVAAPPQGFGISARSVTVSTVGLAPAIRKLADERLGVTLALS 234

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVP+N ++ +   +DA R+Y  ++   R++ EY +++ +ND P  A  L
Sbjct: 235 LHAPDDELRDTLVPVNNRWKIAEALDAARYYADVTGR-RVSVEYALIRDVNDQPWRADLL 293

Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            + L    G    +NLIP NP PG ++  S +     F   ++ +G S  +R  RG +I 
Sbjct: 294 GRRLHRALGPLVHVNLIPLNPTPGSQWDASPKPVEREFVRRVRAAGVSCTVRDTRGREIS 353

Query: 360 AACGQLKSL 368
           AACGQL + 
Sbjct: 354 AACGQLAAE 362


>gi|295698544|ref|YP_003603199.1| radical SAM enzyme, Cfr family [Candidatus Riesia pediculicola
           USDA]
 gi|291157215|gb|ADD79660.1| radical SAM enzyme, Cfr family [Candidatus Riesia pediculicola
           USDA]
          Length = 356

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/362 (39%), Positives = 208/362 (57%), Gaps = 13/362 (3%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+     ++ +    IG        R  Q+  WIY     +FQ M++ S+++R  +
Sbjct: 3   NKLNLLQYDILKVRKIFKDIG----ENTFRADQLTDWIYRHYCDNFQSMTNFSRDLRKKM 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              F I+ P I ++KIS DGT KW +R  +        IETV+IPE  R TLC+SSQ+GC
Sbjct: 59  ESFFQILPPRIQEKKISLDGTIKWRMRTDSE-----ETIETVFIPEGRRKTLCISSQIGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C FC+   +K  RNL   EI+ QV +A  +L               +     +NIV+
Sbjct: 114 PLKCRFCFVSKKKFRRNLKISEIVGQVWIAGKILRKEISS---VFSKKRNHLLPFTNIVI 170

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MG GEPL NF N+  S+ I + S G +F +++I LST+G  P I ++ E   + LAISLH
Sbjct: 171 MGTGEPLLNFRNILSSIRIITSSHGFNFPEKKIVLSTAGVSPAIEKLLENTQIKLAISLH 230

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-ARRITFEYVMLKGINDSPRDALNLI 303
           A +N +R+ ++PIN+KY ++ ++D+ + +   SN  +RIT EY+ML+GIND  +DA  L 
Sbjct: 231 APNNKIRDRIMPINKKYDIQSILDSIQKFQNHSNIFQRITIEYIMLRGINDEVQDAYQLA 290

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            ILK IP KINLIPFN   G  Y  S+   I  FSE +K+  + + +R  +G DI A+CG
Sbjct: 291 DILKNIPVKINLIPFNSTAGIPYKRSNLLHIQQFSEILKKFRFVTTVRKTKGGDIQASCG 350

Query: 364 QL 365
           QL
Sbjct: 351 QL 352


>gi|23335166|ref|ZP_00120404.1| COG0820: Predicted Fe-S-cluster redox enzyme [Bifidobacterium
           longum DJO10A]
 gi|189439272|ref|YP_001954353.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
           longum DJO10A]
 gi|322689304|ref|YP_004209038.1| hypothetical protein BLIF_1118 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|189427707|gb|ACD97855.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum
           DJO10A]
 gi|320460640|dbj|BAJ71260.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 389

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 190/374 (50%), Gaps = 28/374 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L  + M  E+  E   ++G+P    + R  Q+    +     +    +D     R  
Sbjct: 35  KPPLHFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               F       V  +++ +GT  K L +     +     IE+V +   +R TLC+SSQV
Sbjct: 91  AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++  EI+ QV +A  ++ D           +     ++SNI
Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNI 196

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+++V  ++   S     G   S R IT+ST G VP I ++  E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++    ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTAQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G ++  S  +D   F E + R+G ++ +R  RG 
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375

Query: 357 DILAACGQLKSLSK 370
           DI  ACGQL +  +
Sbjct: 376 DIDGACGQLAAKER 389


>gi|312132647|ref|YP_003999986.1| fe-s-cluster redox enzyme [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|311773598|gb|ADQ03086.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum
           subsp. longum BBMN68]
          Length = 389

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 191/374 (51%), Gaps = 28/374 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L  + M  E+  E   ++G+P    + R  Q+    +     +    +D     R  
Sbjct: 35  KPPLHFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               F       V  +++ +GT  K L +     +     IE+V +   +R TLC+SSQV
Sbjct: 91  AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++  EI+ QV +A  ++ D           +     ++SNI
Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNI 196

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+++V  ++   S     G   S R IT+ST G VP I ++  E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++  + ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G ++  S  +D   F E + R+G ++ +R  RG 
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375

Query: 357 DILAACGQLKSLSK 370
           DI  ACGQL +  +
Sbjct: 376 DIDGACGQLAAKER 389


>gi|329947859|ref|ZP_08294791.1| 23S rRNA m2A2503 methyltransferase [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328523483|gb|EGF50581.1| 23S rRNA m2A2503 methyltransferase [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 391

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 180/380 (47%), Gaps = 32/380 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +     + A    G+P      R  QI +  +    RD   M+D+    R  L  
Sbjct: 32  RHLADLDLAGRKAACKDSGLPS----FRADQISRHYFTHLTRDGADMTDLPASQREQLCA 87

Query: 67  HFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               + PE++    +   DG  T K L           V +E+V +  K R TLCVSSQ 
Sbjct: 88  E---LLPELISPVRALRADGGRTIKHLWELHD-----GVRVESVLMRYKDRTTLCVSSQA 139

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A                 +     ++SN+
Sbjct: 140 GCGMACPFCATGQMGLTRNLSTAEIVEQVRHAAQ---------TSAAGDLTGGPARLSNV 190

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEP+ N+ NV  +L    D    G   S R IT+ST G VP I R+  E + V L
Sbjct: 191 VFMGMGEPMVNYRNVVGALHRLIDPAPEGFGMSARGITVSTVGLVPLIRRLAGEGLPVTL 250

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ L+P+N ++ +  L+DA   Y  L+  RR++ EY ++K +ND    A
Sbjct: 251 AVSLHAPDDELRDELIPVNSRWKVGELLDAAHDYF-LATGRRVSIEYALIKDMNDHSWRA 309

Query: 300 LNLIKILKGIPA---KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L   L    A    +N IP NP PG  + CS+      F + ++R+G ++ +R  RG 
Sbjct: 310 QLLADELNRRDAGWAHVNPIPLNPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGS 369

Query: 357 DILAACGQLKSLSKRIPKVP 376
           DI  ACGQL +      +  
Sbjct: 370 DIDGACGQLATEVLNQERAK 389


>gi|84498390|ref|ZP_00997187.1| hypothetical protein JNB_19923 [Janibacter sp. HTCC2649]
 gi|84381890|gb|EAP97773.1| hypothetical protein JNB_19923 [Janibacter sp. HTCC2649]
          Length = 392

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/385 (31%), Positives = 179/385 (46%), Gaps = 32/385 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E + A+ ++G    H   R  Q+    + R +   + M+D+ + VR  L  
Sbjct: 17  RHLADLSPAERKAAVEELG----HKGFRAKQLSTHYFERLVESPEDMTDLPKAVRDDLVA 72

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                    V    +  G T K + R     +     +E+V +    R T+C+SSQ GC 
Sbjct: 73  DLLPTLLTPVRTLEADRGATLKSVWRLHDGAL-----VESVLMRYPKRVTICISSQAGCG 127

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD---------------FPGCEDIEGM 170
           + C FC TG   L RN++A EI+ QV+ A   L                      + E  
Sbjct: 128 MNCPFCATGQAGLTRNMSAAEIVEQVVDANRKLRHGALPAIGATHPAEAGLGDEAEDEDA 187

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNI 228
                  ++SN+V MGMGE L N+     ++   +D    GL  S R IT+ST G VP I
Sbjct: 188 ATKVGPERVSNVVFMGMGEALANYKAAIGAIRRLTDPTPDGLGMSARGITMSTVGLVPAI 247

Query: 229 ARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            ++  E I V LA+SLHA  ++LR+ LVPIN ++ ++  IDA   Y   +   R++ EY 
Sbjct: 248 DKLAAEGIPVTLALSLHAPDDELRDELVPINTRWKVDEAIDAAYRYFEATGR-RVSIEYA 306

Query: 288 MLKGINDSPRDALNLIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344
           ++K IND    A  L K L  +G     +N IP NP PG ++  S       F E ++  
Sbjct: 307 LIKDINDQAWRADLLGKKLTARGKGWVHVNPIPLNPTPGSKWTASRPGVEQQFVERLRAY 366

Query: 345 GYSSPIRTPRGLDILAACGQLKSLS 369
           G  + +R  RG DI  ACGQL + +
Sbjct: 367 GIPTTVRDTRGSDIDGACGQLAAAT 391


>gi|19553223|ref|NP_601225.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
           glutamicum ATCC 13032]
 gi|62390859|ref|YP_226261.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
           glutamicum ATCC 13032]
 gi|81760328|sp|Q8NP06|RLMN_CORGL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|21324790|dbj|BAB99413.1| Predicted Fe-S-cluster redox enzyme [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326198|emb|CAF20360.1| Predicted Fe-S-cluster redox enzyme [Corynebacterium glutamicum
           ATCC 13032]
          Length = 366

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/373 (31%), Positives = 183/373 (49%), Gaps = 31/373 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +       +  E   EAL ++G+P    + R +QI +  Y R   D   M+D+ +  R  
Sbjct: 16  MPPTHFADLNDEARIEALKELGLP----KFRLNQIARHYYGRLEADPLTMTDLPEGARQE 71

Query: 64  LNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +    F  +   +   +   D T+K L +     +     +E+V +    R TLC+SSQ 
Sbjct: 72  VKDALFPTLMSPLRVVETDDDTTQKTLWKLHDGTL-----LESVLMRYSDRSTLCISSQA 126

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A                 + S G ++SNI
Sbjct: 127 GCGMACPFCATGQGGLDRNLSIGEIVDQVRNAA--------------ATMQSEGGRLSNI 172

Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEPL N+  V  ++   +     G   S+R +T+ST G  P I ++  EE+ V L
Sbjct: 173 VFMGMGEPLANYKRVVSAVRQITQPSPAGFGISQRSVTVSTVGLAPAIRKLADEEMSVTL 232

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++P+  ++DA R+Y   S   R++ EY +++ +ND    A
Sbjct: 233 AVSLHTPDDELRDTLVPVNNRWPVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQDWRA 291

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L + L    G    +NLIP NP PG ++  + +     F   +   G    +R  +G 
Sbjct: 292 DMLGEKLHKALGSRVHVNLIPLNPTPGSKWDAAPKARQDEFVRRVIAKGVPCTVRDTKGQ 351

Query: 357 DILAACGQLKSLS 369
           +I AACGQL +  
Sbjct: 352 EIAAACGQLAAEE 364


>gi|212723564|ref|NP_001132113.1| hypothetical protein LOC100193530 [Zea mays]
 gi|195654259|gb|ACG46597.1| hypothetical protein [Zea mays]
          Length = 410

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 182/378 (48%), Gaps = 39/378 (10%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LL 64
           + +L+G+   +L +  + +G        R  Q+   +Y    +  Q  + + +  R  LL
Sbjct: 45  RRALLGLSEPQLRQLAIDLG----QQSYRGKQLHDLLYKSRAKQIQEFNHVPKAFREALL 100

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCV 118
              +S+    +     + DGT K LL+     +     IETV IP         R T CV
Sbjct: 101 GAGWSVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDNKGSSRLTACV 155

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC L CSFC TG     RNL   EI+ QVL                         +
Sbjct: 156 SSQVGCPLRCSFCATGKGGFARNLQPHEIVEQVLAIEETFKH-----------------R 198

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGV 237
           ++N+V MGMGEP+ N  +V ++    +    L   +R +T+ST G    I  +   ++  
Sbjct: 199 VTNVVFMGMGEPMMNLKSVLEAHQCFNKE--LKIGQRMMTISTVGVPNTIKMLASHKLQS 256

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA +  LR  +VP  + YPL  L+D C+ Y  L   RR++FEY +L GIND   
Sbjct: 257 TLAVSLHAPNQKLRETIVPSAKSYPLGALMDDCKSYF-LETGRRVSFEYTLLAGINDEKE 315

Query: 298 DALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
            A  L ++L+  G    +NLIP+NP  G EY    +K +  F + ++    +  +R  RG
Sbjct: 316 HAEELAELLRMCGGGYHVNLIPYNPIEGSEYKRPYRKVVQAFVDALEARKITVSVRRTRG 375

Query: 356 LDILAACGQLKSLSKRIP 373
           LD  AACGQL++  ++ P
Sbjct: 376 LDANAACGQLRNEFQKNP 393


>gi|183981843|ref|YP_001850134.1| hypothetical protein MMAR_1830 [Mycobacterium marinum M]
 gi|205829814|sp|B2HJP3|RLMN_MYCMM RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|183175169|gb|ACC40279.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 364

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 186/370 (50%), Gaps = 32/370 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L     E    A+  +G+P      R  Q+    Y R I D + M+D+   VR  + +
Sbjct: 17  RHLADFDAEGRASAVAALGLPP----FRAKQLAHQYYGRLIADPRQMTDLPAAVREQIAE 72

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                       +++CD   TRK L R         V +E+V +    R T+C+SSQ GC
Sbjct: 73  TMFPNLLT-AAREVTCDAGQTRKTLWR-----ATDGVTLESVLMRYPQRNTVCISSQAGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EIL QV  A + L D               G ++SN+V 
Sbjct: 127 GMACPFCATGQGGLTRNLSTAEILEQVRAAAAALRD-------------EFGDRLSNVVF 173

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V  ++   ++   MG   S R +T+ST G  P I ++ +E +GV LA+
Sbjct: 174 MGMGEPLANYARVLAAVRRITEPPPMGFGISARSVTVSTVGLAPAIRKLADERLGVTLAL 233

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVP+N ++ +   ++A  +Y  ++   R++ EY +++ +ND P  A  
Sbjct: 234 SLHAPDDELRDTLVPVNNRWKISEALEAAHYYAEVTGR-RVSVEYALIREVNDQPWRADL 292

Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L K L    G    +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I
Sbjct: 293 LGKRLHRALGPLVHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAQGVSCTVRDTRGREI 352

Query: 359 LAACGQLKSL 368
            AACGQL + 
Sbjct: 353 SAACGQLAAE 362


>gi|300087719|ref|YP_003758241.1| Cfr family radical SAM protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527452|gb|ADJ25920.1| radical SAM enzyme, Cfr family [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 341

 Score =  368 bits (944), Expect = e-99,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 181/368 (49%), Gaps = 35/368 (9%)

Query: 4   LKKE----SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
           + K     +L+GM   EL +    +G        R +Q+ +W+Y R       M+++   
Sbjct: 1   MDKPETTRTLLGMNTAELRQLAETLGQSA----FRGNQLAEWLYHRDAAAIAEMTNLPAA 56

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
            R+ L + +    P ++  + S DGT K LL F         ++ETV +P   R + CVS
Sbjct: 57  FRYRLAECYPTGRPVVITRRQSDDGTLKLLLEF-----ADGEQVETVGLPYHDRYSCCVS 111

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +Q GC + C+FC TG     R L+A EI+ QVL                       GR++
Sbjct: 112 TQAGCPVGCAFCATGQGGYRRQLSAGEIVAQVLAVSR-----------------EAGRRV 154

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
            ++  MGMGEPL N+D   K+L +  D +G   + R +T+ST G VP I R+  E + V 
Sbjct: 155 DHVTFMGMGEPLLNYDATVKALHLLRDEVG--IAARHLTVSTIGHVPGILRLARENLPVT 212

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLH      R  L+P  R  P   ++ A R +  L+   R+T EY +L G+ND P D
Sbjct: 213 LALSLHTPDEVTRRRLIPGLRSTP-AEIVTAGREHFALTGR-RLTVEYCLLDGVNDRPED 270

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L  +L+G    INLIPFNP     +  S    +  F   ++ +G+    R  RG DI
Sbjct: 271 ASALAVLLEGTGFHINLIPFNPTDDLPFRPSPATTVERFMNRLRAAGFEVTARVRRGADI 330

Query: 359 LAACGQLK 366
            AACGQL+
Sbjct: 331 EAACGQLR 338


>gi|225352146|ref|ZP_03743169.1| hypothetical protein BIFPSEUDO_03761 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157393|gb|EEG70732.1| hypothetical protein BIFPSEUDO_03761 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 393

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 187/374 (50%), Gaps = 28/374 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L    M  +E       +G+P    + R  Q+    Y       +  SD     R  
Sbjct: 38  KPPLHFADMTEDERIAKAKDLGLP----KFRVKQLANHYYGHFDVAAEEFSDFPAAKRAE 93

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
             + F       V  +++ +GT  K L R     +     IE+V +   +R TLC+SSQV
Sbjct: 94  AAEAFFPTLITEVTRQVADEGTTIKTLWRLFDGSL-----IESVLMRYPTRTTLCISSQV 148

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++A EIL QV +A   + D           +     ++SNI
Sbjct: 149 GCGMGCPFCATGQLGLTRNMSAGEILEQVRVAAKAMHD---------GEVAGGLGRLSNI 199

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+ +V  ++   S     G   S R IT+ST G VP I ++  E I V L
Sbjct: 200 VFMGMGEPMGNYKSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 259

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++    ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 260 AVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 318

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G ++  S  +D   F + + ++G ++ +R  RG 
Sbjct: 319 KLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQQFLDILHKAGITATLRDTRGQ 378

Query: 357 DILAACGQLKSLSK 370
           DI  ACGQL +  +
Sbjct: 379 DIDGACGQLAAKEQ 392


>gi|213691945|ref|YP_002322531.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523406|gb|ACJ52153.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458052|dbj|BAJ68673.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 389

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 190/374 (50%), Gaps = 28/374 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L  + M  E+  E   ++G+P    + R  Q+    +     +    +D     R  
Sbjct: 35  KPPLHFVDMTPEQRIEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               F       V  +++ +GT  K L +     +     IE+V +   +R TLC+SSQV
Sbjct: 91  AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++  EI+ QV +A  ++ D           +     ++SNI
Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGAGRLSNI 196

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+++V  ++   S     G   S R IT+ST G VP I ++  E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++    ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G ++  S  +D   F E + R+G ++ +R  RG 
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375

Query: 357 DILAACGQLKSLSK 370
           DI  ACGQL +  +
Sbjct: 376 DIDGACGQLAAKER 389


>gi|33241085|ref|NP_876027.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|81663987|sp|Q7VA32|RLMN_PROMA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33238614|gb|AAQ00680.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 348

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 122/372 (32%), Positives = 188/372 (50%), Gaps = 37/372 (9%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L+G+   +LE   L  G        R  Q+ +W+Y +G+ +   ++ + +  R+ L 
Sbjct: 5   KIQLLGLDLSQLERLALDHG----ESLYRGRQLHQWLYQKGVDNLDDITVLPKAWRNSLI 60

Query: 66  QH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           Q   S+     V+  I+ D T K LL       G    IETV IP  +R T+CVSSQ+GC
Sbjct: 61  QKGISVGGLVEVNRFIAGDRTIKLLL-----STGDGEIIETVGIPSGNRLTICVSSQIGC 115

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L R+L   EI+ QV   +                  +  R  SN+V 
Sbjct: 116 PMGCQFCATGKDGLKRSLKVNEIVAQVFAVKK-----------------AFNRSPSNVVF 158

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGV 237
           MGMGEPL N + V  S+   +    L   +RRIT+ST G    + ++ E        +  
Sbjct: 159 MGMGEPLLNIEEVLSSICCLNKD--LGIGQRRITVSTVGVKNTLPQLAELALQFLGSVQF 216

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA +  LR  L+P  + YP+++L++ CRHY  L+   R++FEY++L  +ND   
Sbjct: 217 TLALSLHAPNQKLRESLIPSAQNYPIKLLLEDCRHYLDLTGR-RVSFEYILLGHLNDHIE 275

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L  ++ G  + +NLI +NP  G  +     + +  F + +++ G    +R  RGLD
Sbjct: 276 HAEELADLVGGFQSHVNLIAYNPIDGESFQRPSNQRVNIFIKTLQKRGIVVSLRASRGLD 335

Query: 358 ILAACGQLKSLS 369
             AACGQL+S++
Sbjct: 336 KNAACGQLRSMN 347


>gi|332295839|ref|YP_004437762.1| Ribosomal RNA large subunit methyltransferase N [Thermodesulfobium
           narugense DSM 14796]
 gi|332178942|gb|AEE14631.1| Ribosomal RNA large subunit methyltransferase N [Thermodesulfobium
           narugense DSM 14796]
          Length = 353

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 137/364 (37%), Positives = 207/364 (56%), Gaps = 25/364 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K S   +   ELE+    +G      + R +Q++ W+Y   I DF  MS++S  +R L
Sbjct: 1   MNKRSFFELSFSELEKFFTDLGFS----KYRANQVFSWVYKNNIYDFMQMSNLSLNLRDL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+  F + +P+I     S D + K+LL      +G    IETV+I  K+R T+C+SSQ+G
Sbjct: 57  LSSSFDLSFPKIQSTVESADNSFKFLL-----HLGENDFIETVFINHKNRNTICISSQIG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C  C TG     RNL   EI+LQV+   + +    G              KI NIV
Sbjct: 112 CPVGCVMCSTGKIGFKRNLKVSEIVLQVMAVENFVRSKMG--------------KIDNIV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
            MGMGEP+ NFDNV K++ I +D  G SFS RRI +STSGFV  I ++ E  + + LA+S
Sbjct: 158 FMGMGEPMLNFDNVIKAIKILTDKNGKSFSPRRIVISTSGFVDGIKKLKEVGLPIKLAVS 217

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA ++++R+ L+PIN+ + +  LI A   Y  L++ RR+T+EYV+++ INDS +D + L
Sbjct: 218 LHATTDEIRSKLIPINKTFGISELIKASEEY-ALASKRRVTYEYVLMESINDSDQDIIRL 276

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LKG+ A +NL+ +N       + ++ + I  F + +   G  + IR  +G DI  AC
Sbjct: 277 KDLLKGLHAHVNLVKYNQSLSNVRIKTNIRRIKLFEKMLNNFGIKTTIRFSKGEDINGAC 336

Query: 363 GQLK 366
           GQL 
Sbjct: 337 GQLA 340


>gi|322691316|ref|YP_004220886.1| hypothetical protein BLLJ_1127 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456172|dbj|BAJ66794.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 389

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 191/374 (51%), Gaps = 28/374 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L  + M  E+  E   ++G+P    + R  Q+    +     +    +D     R  
Sbjct: 35  KPPLHFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               F       V  +++ +GT  K L +     +     IE+V +   +R TLC+SSQV
Sbjct: 91  AAAAFFPRLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++  EI+ QV +A  ++ D           +     ++SNI
Sbjct: 146 GCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNI 196

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+++V  ++   S     G   S R IT+ST G VP I ++  E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++  + ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G ++  S  +D   F E + R+G ++ +R  RG 
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375

Query: 357 DILAACGQLKSLSK 370
           DI  ACGQL +  +
Sbjct: 376 DIDGACGQLAAKER 389


>gi|227547301|ref|ZP_03977350.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212260|gb|EEI80156.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 389

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 191/374 (51%), Gaps = 28/374 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L  + M  E+  E   ++G+P    + R  Q+    +     +    +D     R  
Sbjct: 35  KPPLHFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               F       V  +++ +GT  K L +     +     IE+V +   +R TLC+SSQV
Sbjct: 91  AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++  EI+ QV +A  ++ D           +     ++SNI
Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNI 196

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+++V  ++   S     G   S R IT+ST G VP I ++  E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++  + ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G ++  S  +D   F E + RSG ++ +R  RG 
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRSGITATLRDTRGQ 375

Query: 357 DILAACGQLKSLSK 370
           DI  ACGQL +  +
Sbjct: 376 DIDGACGQLAAKER 389


>gi|23466064|ref|NP_696667.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
           longum NCC2705]
 gi|81753640|sp|Q8G481|RLMN_BIFLO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|23326790|gb|AAN25303.1| widely conserved hypothetical protein [Bifidobacterium longum
           NCC2705]
          Length = 389

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 191/374 (51%), Gaps = 28/374 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L  + M  E+  E   ++G+P    + R  Q+    +     +    +D     R  
Sbjct: 35  KPPLHFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               F       V  +++ +GT  K L +     +     IE+V +   +R TLC+SSQV
Sbjct: 91  AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++  EI+ QV +A  ++ D           +     ++SNI
Sbjct: 146 GCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNI 196

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+++V  ++   S     G   S R IT+ST G VP I ++  E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++  + ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G ++  S  +D   F E + R+G ++ +R  RG 
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375

Query: 357 DILAACGQLKSLSK 370
           DI  ACGQL +  +
Sbjct: 376 DIDGACGQLAAKER 389


>gi|315604531|ref|ZP_07879594.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313543|gb|EFU61597.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 422

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 124/372 (33%), Positives = 181/372 (48%), Gaps = 32/372 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L  +     ++ +  +G P      R  Q+ +  +     D   MSDI   +R  + + 
Sbjct: 62  HLADLDSAARKQVVKDLGFPA----FRADQLSRHYFSHFEADPARMSDIPAGMREAVAEA 117

Query: 68  FSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
              + P +V + +S   DG  T K L R          ++E+V +    R TLCVSSQ G
Sbjct: 118 ---LLPHLVTKVVSLEADGGRTIKDLWRLYD-----GAQVESVLMRYPQRTTLCVSSQAG 169

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG   L RNL+  EI+ QV  A++   D           +      +SN+V
Sbjct: 170 CGMACPFCATGQMGLTRNLSTAEIVDQVRAAQASCRD---------GALAGGPTTLSNVV 220

Query: 184 MMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
            MGMGEPL N+  V  +L    D    G   S R IT+ST G VP I ++  E + V LA
Sbjct: 221 FMGMGEPLANYKTVVAALHRLIDPAPEGFGMSARNITVSTVGLVPAIKKLAGEGMPVTLA 280

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA  +DLR+ L+PIN ++ +  L+DA R Y  L+  RR++ EY ++K +ND    A 
Sbjct: 281 VSLHAPDDDLRDDLIPINSRWKVGELLDAARGYF-LATGRRVSIEYALIKDMNDQEWRAQ 339

Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L   L         +N IP NP PG  +  S ++    F   ++ +G ++ IR  RG D
Sbjct: 340 LLADELNRRGHGWVHVNPIPLNPTPGSIWTASTRRAQHAFVSRLRDNGIATSIRDTRGSD 399

Query: 358 ILAACGQLKSLS 369
           I  ACGQL +  
Sbjct: 400 IDGACGQLATAH 411


>gi|224098427|ref|XP_002311170.1| predicted protein [Populus trichocarpa]
 gi|222850990|gb|EEE88537.1| predicted protein [Populus trichocarpa]
          Length = 441

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 125/382 (32%), Positives = 187/382 (48%), Gaps = 27/382 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
           L+GM   EL++    +G        R  Q+   IY R +++ Q  S +    R+ L +  
Sbjct: 55  LLGMSEPELQQLATDLG----QQSYRGKQLHHLIYQRKVKEIQDFSQLPLVFRNDLQEAG 110

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQV 122
           + +    I     + DGT K L+R     +     IETV IP +      R T CVSSQV
Sbjct: 111 WKVGRSPIFQTVTAADGTVKLLIRLEDNRL-----IETVGIPVEDEKGSMRLTACVSSQV 165

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG------MVIPSVG 176
           GC L CSFC TG     RNL   EI+ Q  L  S          +         V     
Sbjct: 166 GCPLRCSFCATGKGGFSRNLQRHEIVEQHRLGSSGTTSTCSKLYLHVLYAQVLAVEEIFK 225

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEI 235
            +++N+V MGMGEP+ N  +V ++    +    +   +R IT+ST G    I ++   ++
Sbjct: 226 HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASHKL 283

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              LA+SLHA +  LR  +VP  + YPL+ ++  C+ Y  L  +RR++FEY +L G+ND 
Sbjct: 284 QSTLALSLHAPNQKLRETIVPSAKSYPLDAIMKDCKEYF-LETSRRVSFEYALLAGVNDR 342

Query: 296 PRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
              A  L ++L   G    +NLIPFNP  G +Y    +K I  F+  ++    +  +R  
Sbjct: 343 VEHAKELAELLHQWGRGHHVNLIPFNPIQGSDYKRPHKKAIQAFAAVLESRKVTVSVRQT 402

Query: 354 RGLDILAACGQLKSLSKRIPKV 375
           RGLD  AACGQL++  ++ P V
Sbjct: 403 RGLDASAACGQLRNEFQKSPLV 424


>gi|194476577|ref|YP_002048756.1| hypothetical protein PCC_0094 [Paulinella chromatophora]
 gi|171191584|gb|ACB42546.1| hypothetical protein PCC_0094 [Paulinella chromatophora]
          Length = 350

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 127/375 (33%), Positives = 184/375 (49%), Gaps = 36/375 (9%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N L +  L+GM +  LE   +  G        R  QI +W+Y++G RD + ++ + +  R
Sbjct: 4   NALDRIPLLGMGQLALETWAVAHG----QAAFRGRQIHEWMYLKGERDIESITVLPKSWR 59

Query: 62  HLL-NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             L   +  +     +  +IS DGT K LL+           IETV IP   R T+CVSS
Sbjct: 60  EQLIMANIQLGRSRELQRQISSDGTIKLLLQ----STSDSETIETVGIPTAQRLTVCVSS 115

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG   L R+L   EIL QVL  R ++                  R+ +
Sbjct: 116 QAGCPMACQFCATGKGGLQRSLLTHEILDQVLSIRRVM-----------------DRRPT 158

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE------- 233
           +IV MGMGEPL N + V +S+   +D      S+RRIT+ST G    +  + E       
Sbjct: 159 HIVFMGMGEPLLNIEAVLESIQSLNDD--FGISQRRITISTVGVPRTLPLLAELALKRLD 216

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
                LA+SLHA +  LR  L+P    Y L+ +++ CRHY  ++   R++FEY++L G+N
Sbjct: 217 RAQFTLAVSLHAPNQSLREKLIPSATAYSLDNILEDCRHYLAITGR-RVSFEYILLGGVN 275

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           D    A  L   + G  + +NLI +NP     +   +   I  F   +K  G S  +R  
Sbjct: 276 DQTFHAEELADRVSGFQSHVNLIAYNPIDDEVFKRPNIFRIERFLSILKHRGLSVSLRAS 335

Query: 354 RGLDILAACGQLKSL 368
           RGLD  AACGQL+  
Sbjct: 336 RGLDKNAACGQLRRR 350


>gi|317482872|ref|ZP_07941880.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA]
 gi|291516841|emb|CBK70457.1| 23S rRNA m(2)A-2503 methyltransferase [Bifidobacterium longum
           subsp. longum F8]
 gi|316915717|gb|EFV37131.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA]
          Length = 389

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 191/374 (51%), Gaps = 28/374 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L  + M  E+  E   ++G+P    + R  Q+    +     +    +D     R  
Sbjct: 35  KPPLHFVDMTPEQRIEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               F       V  +++ +GT  K L +     +     IE+V +   +R TLC+SSQV
Sbjct: 91  AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++  EI+ QV +A  ++ D           +     ++SNI
Sbjct: 146 GCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNI 196

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+++V  ++   S     G   S R IT+ST G VP I ++  E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++  + ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G ++  S  +D   F E + R+G ++ +R  RG 
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375

Query: 357 DILAACGQLKSLSK 370
           DI  ACGQL +  +
Sbjct: 376 DIDGACGQLAAKER 389


>gi|319441379|ref|ZP_07990535.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
           variabile DSM 44702]
          Length = 370

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 123/375 (32%), Positives = 187/375 (49%), Gaps = 28/375 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +    L  +  +E++ A+   G+P      R +QI +  Y R   D   M+D+ + +R  
Sbjct: 16  MPPTHLADLTDDEVKAAVKDAGLPG----FRANQIARQYYGRLEGDPMAMTDLPENLRST 71

Query: 64  LNQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           +         + V   ISCD   TRK L +     +     +E+V +    R TLC+SSQ
Sbjct: 72  VKDTLFPTLMDPV-RHISCDEGQTRKTLWKLHDSTL-----LESVLMRYPDRATLCISSQ 125

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   L RNL+  EI+ QV  A   + D           +     ++SN
Sbjct: 126 AGCGMACPFCATGQGGLDRNLSTGEIVEQVRAAARAMRDGD---------VEGGEGRLSN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEPL N+  V  ++   +     G   S+R IT+ST G  P I ++ +E + + 
Sbjct: 177 IVFMGMGEPLANYKRVVAAIKRITSPSPEGFGISQRNITVSTVGLAPAIRKLADEDMHMR 236

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLH   ++LR+ LVP+N ++ +E ++DA  +Y   S   R++ EY ++K +ND P  
Sbjct: 237 LAVSLHCPDDELRDTLVPVNNRWSIEEVLDAAAYYAEKSGR-RVSIEYALIKEVNDHPWR 295

Query: 299 ALNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           A  L K LK        +NLIP NP PG E+  S +     F   +   G +  +R  RG
Sbjct: 296 ADLLGKRLKKKLGNQVHVNLIPLNPTPGSEWDASPKPVQDEFVRRVNEQGVACTVRDTRG 355

Query: 356 LDILAACGQLKSLSK 370
            +I AACGQL +  +
Sbjct: 356 QEIAAACGQLAAEER 370


>gi|311744125|ref|ZP_07717931.1| cfr family radical SAM enzyme [Aeromicrobium marinum DSM 15272]
 gi|311313255|gb|EFQ83166.1| cfr family radical SAM enzyme [Aeromicrobium marinum DSM 15272]
          Length = 380

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 179/376 (47%), Gaps = 32/376 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +  EE   A  ++G P      R  Q+    Y R  RD   M+D+    R  +  
Sbjct: 24  RHLADLSTEERTAAAAELGEPA----FRVKQVAHHYYARLERDPAAMTDLPAANRDRIAA 79

Query: 67  HFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPE-----KSRGTLCVSS 120
                  + V    +  GT  K L R     +     +E+V +         R T+CVSS
Sbjct: 80  ALLPTLLDPVRTMEADRGTTVKNLWRLFDGAL-----VESVLMRYLSADGPGRATICVSS 134

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG   L RN++  EI+ QV+ A            +    +     ++S
Sbjct: 135 QAGCGMACPFCATGQGGLQRNMSTAEIVDQVVDAA---------GRMARGEVAGGPGRLS 185

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           N+V MGMGEP+ N+  V  ++         GL  S R ITLST G VP I ++ EE I V
Sbjct: 186 NVVFMGMGEPMANYRAVVGAIRRMVAPAPDGLGLSARNITLSTVGLVPRIRQLTEEGIPV 245

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA  ++LR+ LVPIN ++ ++ ++DA R Y   +   R++ EY M++ IND   
Sbjct: 246 TLAVSLHAPDDELRDTLVPINTRWKVDEVVDAARAYFDATGR-RVSIEYAMMRDINDQAW 304

Query: 298 DALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
            A  L  +L          +NLIP NP PG ++  S ++D   F   ++  G S+ +R  
Sbjct: 305 RADLLGDVLTARGGIGWVHVNLIPLNPTPGSKWTASRREDEREFVRRLEAKGISTTVRDT 364

Query: 354 RGLDILAACGQLKSLS 369
           RG DI  ACGQL +  
Sbjct: 365 RGSDIDGACGQLAAAE 380


>gi|291299709|ref|YP_003510987.1| radical SAM enzyme, Cfr family [Stackebrandtia nassauensis DSM
           44728]
 gi|290568929|gb|ADD41894.1| radical SAM enzyme, Cfr family [Stackebrandtia nassauensis DSM
           44728]
          Length = 388

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 122/375 (32%), Positives = 187/375 (49%), Gaps = 27/375 (7%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             L       +  EE  EA+ ++  P      R +Q+ +  Y R       M+D+    R
Sbjct: 15  RSLPPRHFADLTMEERREAVRELDEPA----FRANQLSRQYYTRHETSVSRMTDLPVASR 70

Query: 62  HLLNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             + +         + +    DGT RK L R     +     +E+V +    R T+CVSS
Sbjct: 71  DKIAEALFPALLTPIKDTECDDGTTRKTLYRLHDGSL-----VESVLMGYPDRATVCVSS 125

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG   L RN++  EI+ QV+ A  L                    ++S
Sbjct: 126 QAGCGMACPFCATGQAGLTRNMSTAEIVEQVVNAARLAEQAKLG-------------RLS 172

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           ++V MGMGEPL N+  V  +L   +D    GL  S R IT+ST G VP I R+ +E + V
Sbjct: 173 HVVFMGMGEPLANYSRVVAALRRVTDPTPGGLGLSARHITVSTVGLVPAIRRLTDEDMSV 232

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA  ++LR+ LVP+N ++ +  ++DA  +Y   +   R++ EY M++ +ND P 
Sbjct: 233 TLAVSLHAPDDELRDELVPVNSRWKVAEVLDAAWNYARRTGR-RVSIEYAMIRDVNDQPW 291

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            A  L ++LKG  A +NLIP NP PG ++  S +     F   ++ +G  + +R  RG D
Sbjct: 292 RADLLGRLLKGKLAHVNLIPLNPTPGSKWDASPKPVEREFVARLRAAGVPTTVRDTRGRD 351

Query: 358 ILAACGQLKSLSKRI 372
           I  ACGQL +  + +
Sbjct: 352 IDGACGQLAASQQDV 366


>gi|284992364|ref|YP_003410918.1| radical SAM enzyme, Cfr family [Geodermatophilus obscurus DSM
           43160]
 gi|284065609|gb|ADB76547.1| radical SAM enzyme, Cfr family [Geodermatophilus obscurus DSM
           43160]
          Length = 395

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 184/369 (49%), Gaps = 26/369 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  + REE   A+ ++G P      R  Q+ +  Y RG+ D   M+D+   VR  L  
Sbjct: 18  RHLADLTREEARAAVTELGQPA----FRADQLTRHFY-RGVTDPAQMTDLPAAVREELTG 72

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                    V   +S DG  TRK L R     +     +E+V +    R T+C+SSQ GC
Sbjct: 73  ALLPGLLTPV-RTLSADGGRTRKTLWRLHDGAL-----VESVLMRYPDRATVCISSQAGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+A EI+ Q                +    +P    ++SN+V 
Sbjct: 127 GMACPFCATGQNGLTRNLSAAEIIGQ---------AVAAAAAMANGEVPGGPGRLSNVVF 177

Query: 185 MGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGEPL N+  V+K+L         GL  S+R +T+ST G VP I R+ EE + V LA+
Sbjct: 178 MGMGEPLANYARVRKTLDALVTPAPHGLGLSQRSVTVSTVGVVPAIRRLTEEGLHVTLAV 237

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVPIN ++ +  ++ A   Y   +   R + EY +++ +ND P  A  
Sbjct: 238 SLHAPDDELRDTLVPINTRWKVGEVVAAADAYAERTGR-RYSVEYALIRDVNDQPERADL 296

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L ++L    A +NLIP NP PG ++  S       F   ++  G  + +R  RG DI  A
Sbjct: 297 LGRLLADRRAHVNLIPLNPTPGSKWDASPLPAQREFVARLRAHGVPTTVRDTRGQDIDGA 356

Query: 362 CGQLKSLSK 370
           CGQL +  +
Sbjct: 357 CGQLAAADR 365


>gi|86742258|ref|YP_482658.1| ribosomal RNA large subunit methyltransferase N [Frankia sp. CcI3]
 gi|123764529|sp|Q2J713|RLMN_FRASC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|86569120|gb|ABD12929.1| 23S rRNA m(2)A-2503 methyltransferase [Frankia sp. CcI3]
          Length = 421

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 124/380 (32%), Positives = 182/380 (47%), Gaps = 26/380 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHLL 64
             L  + R+E  +  + +G P      R  Q+ +  Y R I   + + M+D+ +  R  L
Sbjct: 36  RHLADLTRQERRDVAVSLGQPA----FRADQVARHYYARLIAADEPEAMTDLPERDRQPL 91

Query: 65  NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
                      V      DG TRK   R           +E+V +    R T+CVSSQ G
Sbjct: 92  LDALLPRLLVPVRTLSCDDGLTRKTAWRTVD-----GASLESVIMRYPDRATVCVSSQAG 146

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG   L RNL+  EI+ QV+ A  +L             +     ++SN+V
Sbjct: 147 CGMGCPFCATGQGGLTRNLSTAEIVEQVVHAARVLR---------RRELAGGETRLSNVV 197

Query: 184 MMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
            MGMGEPL N+  V  +L   +     GL  S R +T+ST G VP I R+  E + V LA
Sbjct: 198 FMGMGEPLANYAAVIAALRRLTAHPPEGLGLSARGLTVSTVGLVPAIRRLAGEGLPVTLA 257

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA  + LRN LVPIN ++P+  ++ A   Y  ++   R++ EY ++ G+ND    A 
Sbjct: 258 VSLHAPDDVLRNELVPINTRWPVVEVLAAAWEYAEVTGR-RVSVEYALIDGVNDDVGRAD 316

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L  +L G  A +NLIP NP  G  +  S       F   ++  G  + +R  RG +I A
Sbjct: 317 ALADLLVGRLAHVNLIPLNPTGGSSWRASAPAGQRAFVRRLRDRGIVTTVRDTRGREIAA 376

Query: 361 ACGQLKSL-SKRIPKVPRQE 379
           ACGQL +  + +  +  R E
Sbjct: 377 ACGQLAAEPAGKPERTDRPE 396


>gi|260578946|ref|ZP_05846849.1| Cfr family radical SAM enzyme [Corynebacterium jeikeium ATCC 43734]
 gi|258602920|gb|EEW16194.1| Cfr family radical SAM enzyme [Corynebacterium jeikeium ATCC 43734]
          Length = 345

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 121/367 (32%), Positives = 188/367 (51%), Gaps = 31/367 (8%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
            +  E L+E + ++G+P    + R  QI +  Y R   D   M+D+ +  R  + +    
Sbjct: 3   DLDEETLKERVQELGLP----KFRADQIRRQYYGRLQGDPMEMTDLPESKRAAVKEALFP 58

Query: 71  IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
              + +    + DG TRK L R     +     +E+V +    R TLC+SSQ GC + C 
Sbjct: 59  ELMQPMRNMDADDGETRKTLWRLHDGTM-----LESVLMRYPGRATLCISSQAGCGMACP 113

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG   L RNL+  E++ Q   A S + +               G ++SNIV MGMGE
Sbjct: 114 FCATGQGGLDRNLSVGEMVEQARAAASTMQE--------------EGGRLSNIVFMGMGE 159

Query: 190 PLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246
           PL N+  V +++   S     G   S+R IT+ST G  P I ++  EE+ V LA+SLH  
Sbjct: 160 PLANYKRVVETIRKVSAPAPDGFGISQRNITVSTVGLAPAIRKLADEEMKVRLAVSLHTP 219

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++LR+ LVP+N ++ +E ++DA R+Y   S   R++ EY +++ +ND P  A  L K L
Sbjct: 220 DDELRDELVPVNNRWSVEEVLDAARYYADTSGR-RVSIEYALIRDMNDQPWRADLLGKKL 278

Query: 307 KG---IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +G       +NLIP NP PG ++  S +     F   ++  G    +R  +G +I AACG
Sbjct: 279 RGALGTKVHVNLIPLNPTPGSKWDASPKDRQDEFVRRVEAQGVPCTVRDTKGQEIAAACG 338

Query: 364 QLKSLSK 370
           QL +  +
Sbjct: 339 QLAAEER 345


>gi|145295923|ref|YP_001138744.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
           glutamicum R]
 gi|205829740|sp|A4QF26|RLMN_CORGB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|140845843|dbj|BAF54842.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 366

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 116/373 (31%), Positives = 183/373 (49%), Gaps = 31/373 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +       +  E   EAL ++G+P    + R +QI +  Y R   D   M+D+ +  R  
Sbjct: 16  MPPTHFADLNDEARIEALKELGLP----KFRLNQIARHYYGRLEADPLTMTDLPEGARQE 71

Query: 64  LNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +    F  +   +   +   D T+K L +     +     +E+V +    R TLC+SSQ 
Sbjct: 72  VKDALFPTLMSPLRVIETDDDTTQKTLWKLHDGTL-----LESVLMRYSDRSTLCISSQA 126

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A                 + + G ++SNI
Sbjct: 127 GCGMACPFCATGQGGLDRNLSIGEIVDQVRNAA--------------ATMQAEGGRLSNI 172

Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEPL N+  V  ++   +     G   S+R +T+ST G  P I ++  EE+ V L
Sbjct: 173 VFMGMGEPLANYKRVVSAVRQITQPSPAGFGISQRSVTVSTVGLAPAIRKLADEEMSVTL 232

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++P+  ++DA R+Y   S   R++ EY +++ +ND    A
Sbjct: 233 AVSLHTPDDELRDTLVPVNNRWPVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQDWRA 291

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L + L    G    +NLIP NP PG ++  + +     F   +   G    +R  +G 
Sbjct: 292 DMLGEKLHKALGSRVHVNLIPLNPTPGSKWDAAPKARQDEFVRRVIAKGVPCTVRDTKGQ 351

Query: 357 DILAACGQLKSLS 369
           +I AACGQL +  
Sbjct: 352 EIAAACGQLAAEE 364


>gi|269216514|ref|ZP_06160368.1| radical SAM enzyme, Cfr family [Slackia exigua ATCC 700122]
 gi|269130043|gb|EEZ61125.1| radical SAM enzyme, Cfr family [Slackia exigua ATCC 700122]
          Length = 345

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 118/362 (32%), Positives = 189/362 (52%), Gaps = 28/362 (7%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           +   E   A+ ++ +P      R  QI +W+Y +G   +  M+++S+ +R  L     + 
Sbjct: 7   LSLAEAATAIKELDLPA----FRARQIAQWVYGKGAASYDEMTNLSRSLRERLAVELPLY 62

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
            P IVD +IS DGTRK+++ F           E V +P  +R T+C S+QVGC++ CSFC
Sbjct: 63  TPRIVDRQISQDGTRKYIVAFHD-----GASTEMVAMPYGNRLTVCFSTQVGCAMQCSFC 117

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG +   RNL   E++ Q++LA                    +G ++SN+V MG GEPL
Sbjct: 118 ATGKEGFTRNLVPGEMVDQIILAEK-----------------DMGTRVSNVVSMGQGEPL 160

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDL 250
            N +N+  +L I +D        R I +ST G V  I    +     +LA+SLH+   + 
Sbjct: 161 LNLENLSAALEILNDPAYRGIGARHIVVSTCGIVQGIRAFADIGEQYVLAVSLHSAIQET 220

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R++++P     P++ LI+A + Y   ++  R+TFEYV+++G+ND  R    LI I +   
Sbjct: 221 RDMIMPRVANQPIDALIEAIQEYDRKTHR-RVTFEYVLIQGMNDDRRHIDALIDICRRTH 279

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           + +NLI  N      +  S +K  + F + +K +G  + IR  RG DI  ACGQLK+   
Sbjct: 280 SNVNLIELNEIEESPFRPSGRKVSLEFVKRLKSAGIEASIRDSRGSDIAGACGQLKNERA 339

Query: 371 RI 372
           R+
Sbjct: 340 RL 341


>gi|240171730|ref|ZP_04750389.1| hypothetical protein MkanA1_20620 [Mycobacterium kansasii ATCC
           12478]
          Length = 364

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 120/371 (32%), Positives = 186/371 (50%), Gaps = 30/371 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +    L  +       A+ ++G+P      R  Q+    + R I D + MSD+   VR +
Sbjct: 14  MPPRHLADLDAAGRASAVAELGLPA----FRAKQLAHHYFGRLIADPRQMSDLPAAVRDV 69

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           +           V E     G TRK L R           +E+V +    R T+C+SSQ 
Sbjct: 70  IAAAMFPTLLTAVREVTCDAGQTRKTLWR-----AVDGATVESVLMRYPQRNTVCISSQA 124

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A + + D               G ++SN+
Sbjct: 125 GCGMACPFCATGQGGLTRNLSTAEIVEQVRAAAAAMRD-------------DFGDRLSNV 171

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V  ++   ++    G   S R +T+ST G  P I ++ +E +GV L
Sbjct: 172 VFMGMGEPLANYSRVVAAVRRITEPPPCGFGISARSVTVSTVGLAPAIRKLADERLGVTL 231

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ LVP+N ++ ++  +DA R+Y  ++   R++ EY +++G+ND    A
Sbjct: 232 ALSLHAPDDELRDTLVPVNNRWKVDEALDAARYYAEVTGR-RVSVEYALIRGVNDQRWRA 290

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L + L    G    +NLIP NP PG ++  S +     F + ++  G S  +R  RG 
Sbjct: 291 DLLGRRLHRALGPLVHVNLIPLNPTPGSDWDASPKPVERDFVKHVRAQGVSCTVRDTRGR 350

Query: 357 DILAACGQLKS 367
           +I AACGQL +
Sbjct: 351 EISAACGQLAA 361


>gi|325001872|ref|ZP_08122984.1| ribosomal RNA large subunit methyltransferase N [Pseudonocardia sp.
           P1]
          Length = 369

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 119/371 (32%), Positives = 182/371 (49%), Gaps = 27/371 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   +      ++G+P    + R  Q+ +  + R   D + MSD+  + R  L  
Sbjct: 18  RHLADVDPADRAAVAAELGLP----KFRLDQLARHYFGRLTADVEEMSDLGADARQRLAA 73

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
               +   + ++      TRK L R         V  E+V +    R T+C+SSQ GC +
Sbjct: 74  LLPPLVTPLTEKACDDGATRKTLWRGHD-----GVLAESVLMRYPDRATVCISSQAGCGM 128

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L RNL+  EI+ QV  A +   D    E            ++SN+V MG
Sbjct: 129 ACPFCATGQGGLQRNLSTGEIVDQVRRAAAAARDGALDEPA----------RLSNVVFMG 178

Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGEPL N+  V  ++   +     G   S R +T+ST G VP I R+ EE + V LAISL
Sbjct: 179 MGEPLANYKRVVAAVRRITSPAPDGFGISARGVTVSTVGLVPAIDRLREEGVPVTLAISL 238

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H   ++LR+ LVP+N ++ +  ++DA R Y   +  RR++ EY +++ +ND P  A  L 
Sbjct: 239 HCPDDELRDTLVPVNNRWKVSEVLDAGRRYAT-TTGRRVSIEYALIRDVNDQPWRADMLG 297

Query: 304 KILKGI----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           K+L+         +NLIP NP PG E+  S +     F   ++ +G +  +R  RG +I 
Sbjct: 298 KVLRQHIGTSRVHVNLIPLNPTPGSEWDASPKPVEEEFVRRVRATGVACTVRDTRGQEID 357

Query: 360 AACGQLKSLSK 370
           AACGQL +   
Sbjct: 358 AACGQLAASHP 368


>gi|317050952|ref|YP_004112068.1| radical SAM enzyme, Cfr family [Desulfurispirillum indicum S5]
 gi|316946036|gb|ADU65512.1| radical SAM enzyme, Cfr family [Desulfurispirillum indicum S5]
          Length = 342

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 191/365 (52%), Gaps = 27/365 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
                +  ++++     +G P    + R  Q   W+Y +G  D    +++S+E+R LL +
Sbjct: 2   IDFCSLNYQQVQRLFADLGQP----KFRVDQFLAWVYAKGCLDMDAYTNVSKELRSLLRE 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                   I   + S  D TRK LLRFP         +ETV IP  S+ + C+S+QVGC 
Sbjct: 58  TIHFPRYTIESVQHSRVDNTRKILLRFPD-----GHAVETVLIPVHSKLSQCLSTQVGCK 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC T +    RNL+  EIL Q   AR ++                   ++ N V M
Sbjct: 113 MGCTFCATASMGFKRNLSVSEILAQAFAAREII---------------EPHERVGNFVFM 157

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244
           GMGEPL N++N   ++        + +S R +TLST G +  I R+  EE+   LAISLH
Sbjct: 158 GMGEPLDNYENSIAAIKTIIHPQMMGYSHRHVTLSTCGILKGIRRLSREELPCNLAISLH 217

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           AV+++ R+ L+P+NR   L  L+   R +P LS+ + IT EY++++  NDS  DA  L++
Sbjct: 218 AVNDEQRSFLMPVNRADGLHALMQTLREFP-LSSKKVITIEYLLIRDFNDSTDDAKKLLQ 276

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+G+  K+NLI +NP    +Y   D+K ++ F   +   G  + IR   G DI AACGQ
Sbjct: 277 LLRGLRCKVNLIVYNPHDYADYHAPDEKRVLQFQRILAEKGVMTFIRKSGGSDIDAACGQ 336

Query: 365 LKSLS 369
           L   S
Sbjct: 337 LAGKS 341


>gi|239621375|ref|ZP_04664406.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515836|gb|EEQ55703.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 389

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 189/368 (51%), Gaps = 26/368 (7%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           + M  E+  E   ++G+P    + R  Q+    +     +    +D     R      F 
Sbjct: 41  VDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSEAAAAFF 96

Query: 70  IIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
                 V  +++ +GT  K L +     +     IE+V +   +R TLC+SSQVGC + C
Sbjct: 97  PRLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQVGCGMDC 151

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG   L RN++  EI+ QV +A  ++ D           +     ++SNIV MGMG
Sbjct: 152 PFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNIVFMGMG 202

Query: 189 EPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHA 245
           EP+ N+++V  ++   S     G   S R IT+ST G VP I ++  E I V LA+SLHA
Sbjct: 203 EPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHA 262

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            S++LR+ LVP+N+++  + ++DA   Y  L++ RR++ EY +++GIND    A  L K 
Sbjct: 263 PSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHAQLLAKR 321

Query: 306 LKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           L       A +N IP NP  G ++  S  +D   F E + R+G ++ +R  RG DI  AC
Sbjct: 322 LNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQDIDGAC 381

Query: 363 GQLKSLSK 370
           GQL +  +
Sbjct: 382 GQLAAKER 389


>gi|26554015|ref|NP_757949.1| hypothetical protein MYPE5630 [Mycoplasma penetrans HF-2]
 gi|81747712|sp|Q8EVK0|RLMN_MYCPE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|26454023|dbj|BAC44353.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 352

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 191/361 (52%), Gaps = 27/361 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           S+     +EL++ L K  I          QI+ WIY + +  F  M +IS+E    L Q 
Sbjct: 5   SIYSFTLQELKKELTKNNIKA----FVAEQIFDWIYSKHVDSFDEMKNISKENIEKLKQL 60

Query: 68  FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           FS     +   ++   DGT K+LL+           IETV +      ++CV+SQ+GC++
Sbjct: 61  FSFENMVVDKLQVDKHDGTVKFLLKLEDGNF-----IETVIMKFNYGYSVCVTSQIGCNM 115

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +G  +  RN+T  E + Q ++A+               V  +   K++++V+MG
Sbjct: 116 ACKFCASGLIRKKRNITVGEFIKQFIIAKEY-------------VEKNFNDKLTHMVVMG 162

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
           +GEP  NF+N+ +   +     GL  S R+IT+ST G V  I    + +  V LAI LHA
Sbjct: 163 IGEPFDNFENLIQFFEVIKQQKGLCISPRKITVSTCGLVEKIKEFADLKNQVNLAILLHA 222

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N++RN ++PIN+ Y L+ +I+A  +Y  ++   R+T EY+++K +NDS  +A+ L K+
Sbjct: 223 PNNEIRNKIMPINKVYSLDKVIEAMDYYIKVTKR-RVTIEYILIKDVNDSDENAVELAKL 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LKG    +NLIP+N      Y  S       F + +K++   + IR  RG  I AACGQL
Sbjct: 282 LKGKLCYVNLIPYNKVVENNYFRS--VRGKQFFDVLKKNNIQATIRLERGSSIDAACGQL 339

Query: 366 K 366
           +
Sbjct: 340 R 340


>gi|298372852|ref|ZP_06982842.1| radical SAM enzyme, Cfr family [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275756|gb|EFI17307.1| radical SAM enzyme, Cfr family [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 342

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 187/365 (51%), Gaps = 30/365 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K+S+  +    L+E    + +P    R    Q+ +WIY +    F+ M++IS++   L
Sbjct: 1   MSKQSITDLNLTRLQEEFASLSLP----RYTARQVTEWIYKKRSARFEDMTNISKKNLSL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L +HF            S DGT+K+L            +IETV IP+  R TLCVS QVG
Sbjct: 57  LAEHFDTGRQPYSMATTSADGTKKYLFSTRHG------DIETVMIPDDDRRTLCVSCQVG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C ++C FC TG      NL+A EI+ QVL                        + I+NIV
Sbjct: 111 CRMSCRFCMTGRCGFAGNLSAGEIINQVLSV-------------------DEAKNITNIV 151

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEP  N   V +++ I +   GL++S +RIT+STSG    I    +     LAISL
Sbjct: 152 FMGMGEPFDNLGEVLRAIEILTSEWGLAYSPKRITVSTSGLRKGIETFLDNTQCHLAISL 211

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H    D R  ++P+     +E ++     Y   ++ RR++FEY++ +GINDS R A  ++
Sbjct: 212 HNPFADERAKMMPVEHSDHIEEVVTLLHRY-DFAHQRRLSFEYIVFEGINDSVRHAEGIV 270

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L+G+  ++NLI F+     +    D+  +  F + + R G  S IR  RG DI AACG
Sbjct: 271 RLLRGLFCRVNLIRFHEVADLDLRSPDKNKMEHFRDYLNRHGIISTIRRSRGEDIEAACG 330

Query: 364 QLKSL 368
           QLK+ 
Sbjct: 331 QLKNQ 335


>gi|134102464|ref|YP_001108125.1| ribosomal RNA large subunit methyltransferase N [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291004145|ref|ZP_06562118.1| ribosomal RNA large subunit methyltransferase N [Saccharopolyspora
           erythraea NRRL 2338]
 gi|205829872|sp|A4FMC5|RLMN_SACEN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|133915087|emb|CAM05200.1| predicted Fe-S-cluster redox enzyme [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 369

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 184/373 (49%), Gaps = 26/373 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +    L  +  +E   A+ ++G        R  Q+    + R   D + M+DI    R  
Sbjct: 16  MPPRHLADLSADERRAAVTELG----EKPFRARQLAHHYFGRLNADVESMTDIPAGSRAK 71

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L           V    + +GT RK L R     +     +E+V +    R T+C+SSQ 
Sbjct: 72  LGADLLPTLLTPVRNLDTDEGTTRKTLWRAHDGTL-----LESVLMRYPDRATVCISSQA 126

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A +++ D           +P    ++SN+
Sbjct: 127 GCGMACPFCATGQGGLQRNLSTAEIVDQVRSAAAMMRD---------GEVPGGPGRLSNV 177

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEPL N+  V  ++    D    GL  S+R +T+ST G VP I R+  E++ V L
Sbjct: 178 VFMGMGEPLANYKRVINAVHRICDPAPEGLGLSQRSVTVSTVGLVPAIRRMTAEDLHVTL 237

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ +E ++ A R Y   +   R++ EY +++ IND P  A
Sbjct: 238 AVSLHTPDDELRDTLVPVNNRWKVEEVLQAARGYADHTGR-RVSIEYALIRDINDQPWRA 296

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K+L         +NLIP NP PG ++  S +     F   ++ +G    +R  RG 
Sbjct: 297 DLLGKLLHKHLGQFVHVNLIPLNPTPGSKWDASPKPVEREFVRRVREAGVPCTVRDTRGQ 356

Query: 357 DILAACGQLKSLS 369
           +I AACGQL +  
Sbjct: 357 EIAAACGQLAAEE 369


>gi|258652388|ref|YP_003201544.1| ribosomal RNA large subunit methyltransferase N [Nakamurella
           multipartita DSM 44233]
 gi|258555613|gb|ACV78555.1| radical SAM enzyme, Cfr family [Nakamurella multipartita DSM 44233]
          Length = 372

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 127/375 (33%), Positives = 188/375 (50%), Gaps = 33/375 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
              + +  +E   A+   G P+     R  Q+    +    RD   M+D+    R    +
Sbjct: 19  THFVDLSPDERRAAVRAAGAPE----FRAKQLAHHYFAGLTRDAAEMTDLPAAGR---AE 71

Query: 67  HFSIIYPEIVDEKIS---CDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               + PE++ E  S    DG TRK L R     +     IE+V +    R TLCVSSQ 
Sbjct: 72  FVDALLPELLTEVRSLACDDGSTRKTLWRAHDGTL-----IESVLMRYPDRITLCVSSQA 126

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV LA  +  D    E            ++SN+
Sbjct: 127 GCGMACPFCATGQGGLQRNLSTGEIVEQVRLAARMARDGALGEPG----------RLSNV 176

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N++ V +++   +     GL  S R +T+ST G VP I R+ EE + V L
Sbjct: 177 VFMGMGEPLANYNRVLEAVRAITAPAPSGLGISARSVTVSTVGLVPAIRRLTEEKLQVRL 236

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ +  ++ A R Y   +  RR++ EY +++ IND P  A
Sbjct: 237 AVSLHTPDDELRDTLVPVNERWKVAEVLAAAREYAD-TTGRRVSIEYALIRDINDQPWRA 295

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L  +L+   G    +NLIP NP PG ++  S +     F   ++  G +  +R  RG 
Sbjct: 296 DLLGSLLREHLGPLVHVNLIPLNPTPGSQWDASPRPVQDEFVRRVRAQGVACTVRDTRGQ 355

Query: 357 DILAACGQLKSLSKR 371
           +I AACGQL +   R
Sbjct: 356 EIAAACGQLAAEGVR 370


>gi|311739708|ref|ZP_07713543.1| cfr family radical SAM enzyme [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305524|gb|EFQ81592.1| cfr family radical SAM enzyme [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 374

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 115/374 (30%), Positives = 184/374 (49%), Gaps = 31/374 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L  +    +   E  + L +IG+P    + R  Q+ K  Y     + + M+DI    R  
Sbjct: 20  LPPKHFADLTETERIDKLAEIGLP----KFRAKQLAKHYYEHYTDNVEDMTDIPAGKREA 75

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           + + F     + +    + DG T K L R     +     +E+V +    R TLC+SSQ 
Sbjct: 76  VKEAFFPELMQPIRTTSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQA 130

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ Q                     + + G ++SN+
Sbjct: 131 GCGMACPFCATGQGGLDRNLSTGEIVEQFRH--------------AAAAMAAEGGRLSNV 176

Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V +++   +  D  G   S+R +T+ST G  P I ++ +E +   L
Sbjct: 177 VFMGMGEPLANYKRVVQAVRQITGQDGAGFGLSQRNVTVSTVGLAPAIRKLADEDLACTL 236

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ ++ ++DA R+Y   S ARR++ EY +++  ND    A
Sbjct: 237 AVSLHTPDDELRDGLVPVNNRWSVDEVLDAARYYADKS-ARRVSIEYALIRDKNDQDFRA 295

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L + L    G    +N+IP NP PG E+  + Q     F   ++  G    +R  +G 
Sbjct: 296 DMLGRKLHQKLGSKVHVNVIPLNPTPGSEWDAAPQDRQDEFVRRVQAQGVPCTVRDTKGD 355

Query: 357 DILAACGQLKSLSK 370
           +I AACGQL +  +
Sbjct: 356 EIAAACGQLAADER 369


>gi|291456892|ref|ZP_06596282.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213]
 gi|291382169|gb|EFE89687.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213]
          Length = 389

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 189/374 (50%), Gaps = 28/374 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L  + M   +  E   ++G+P    + R  Q+    +     +    +D     R  
Sbjct: 35  KPPLHFVDMTPAQRIEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRDE 90

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               F       V  +++ +GT  K L +     +     IE+V +   +R TLC+SSQV
Sbjct: 91  AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++  EI+ QV +A  ++ D           +     ++SNI
Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIVEQVRVAAKMMRD---------GEVAGGEGRLSNI 196

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+++V  ++   S     G   S R IT+ST G VP I ++  E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++    ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G ++  S  +D   F E + R+G ++ +R  RG 
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEKQFLEILHRAGITATLRDTRGQ 375

Query: 357 DILAACGQLKSLSK 370
           DI  ACGQL +  +
Sbjct: 376 DIDGACGQLAAKER 389


>gi|332670033|ref|YP_004453041.1| radical SAM enzyme, Cfr family [Cellulomonas fimi ATCC 484]
 gi|332339071|gb|AEE45654.1| radical SAM enzyme, Cfr family [Cellulomonas fimi ATCC 484]
          Length = 374

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 110/370 (29%), Positives = 174/370 (47%), Gaps = 26/370 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +  + +  E+   A+ ++G        R  Q+    +     D   M+D+ +  R  L +
Sbjct: 23  KHFVDLTPEQRVAAVTELG----EKPFRAKQLATHYFTHLTSDPAAMTDLPKATRDKLVE 78

Query: 67  HFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                         +  GT  K L            ++E+V +   +R TLC+SSQ GC 
Sbjct: 79  GLFPTLLTAHRTLTADQGTTVKTLWHLFD-----GAKVESVLMRYANRTTLCISSQAGCG 133

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC TG   L RNL+  EI+ QV  A   L D           +P    +++N+V M
Sbjct: 134 LACAFCATGQLGLTRNLSTAEIVEQVRAAARSLAD---------GEVPGGPTRLTNVVFM 184

Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N+  V +++         GL  S R +T+ST G VP + ++  E I V LA+S
Sbjct: 185 GMGEPLANYKAVMETVRRLVAPTPDGLGMSARNVTVSTVGMVPAMDKLANEGIPVTLALS 244

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVP+N ++ ++  ID+   Y   +   R++ EY +++ +ND    A  L
Sbjct: 245 LHAPDDELRSELVPVNTRWSVDEAIDSAHRYFEKTGR-RVSIEYALIRDVNDHAWRADLL 303

Query: 303 IKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            + L  +G      N IP NP P   +  SD +    F   ++  G  + +R  RG +I 
Sbjct: 304 GEKLAARGTGWVHCNPIPLNPVPNSRWTASDPQVEREFVARLRAHGIPTTVRDTRGSEID 363

Query: 360 AACGQLKSLS 369
            ACGQL +  
Sbjct: 364 GACGQLAAEE 373


>gi|114776700|ref|ZP_01451743.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1]
 gi|114552786|gb|EAU55217.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1]
          Length = 357

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 133/371 (35%), Positives = 204/371 (54%), Gaps = 27/371 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHV-RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           L GM  ++L       G+   H  R+R + I++        D     D+   +R  L +H
Sbjct: 7   LNGMNHDQLLALCGAAGVSPAHADRLRAA-IFRHY--GSDTDINNTPDLPLRLRSYLAEH 63

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            +++ P         DGTRK LL      +    E+ETV IP   R T C+S+QVGC++ 
Sbjct: 64  TALLQPASTATSEGEDGTRKLLL-----AMADGREVETVLIPGNGRLTQCISTQVGCAVG 118

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC T T  L RNLTA E++ +V   + + G                 R++ N+V+MGM
Sbjct: 119 CTFCLTATAGLTRNLTAAEMVAEVTAGQRISG-----------------RQVRNLVLMGM 161

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAV 246
           GEPL N+D V   + +A+D  G++FS  R+TLSTSG VP + R+  +E+   LA+SL+A 
Sbjct: 162 GEPLHNYDEVAHFVRLATDPKGMAFSPNRVTLSTSGLVPAMQRMIRDELPCNLAVSLNAT 221

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++ +R+ ++PINRKYP+ ML+D  R Y  +   +R+  EYV+L GINDS  DA+ L +++
Sbjct: 222 NDAVRDTIMPINRKYPIAMLLDTVREYIRVRGNKRVLIEYVLLDGINDSQADAIRLCELM 281

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            G+   +NL+PFN +PG  +       +  F   +  +G  + +R  +G DI AACGQLK
Sbjct: 282 AGMGCTVNLLPFNAYPGLPFQRPADAAVSAFRAILVEAGIITVVRESKGRDIAAACGQLK 341

Query: 367 SLSKRIPKVPR 377
           +   +  K  R
Sbjct: 342 TEVVQRRKASR 352


>gi|254776158|ref|ZP_05217674.1| hypothetical protein MaviaA2_16010 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 364

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 182/367 (49%), Gaps = 30/367 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +  +    A+ ++G+P      R  Q+    Y R I D + M+D+   +R  +  
Sbjct: 17  RHLADLDADGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAGLRDAIAD 72

Query: 67  H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F I+     +       TRK L R         V +E+V +    R T+C+SSQ GC 
Sbjct: 73  TMFPILLTAASEVTCDAGQTRKTLWRALD-----GVTVESVLMRYPQRNTVCISSQAGCG 127

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EIL QV    + L D               G ++SN+V M
Sbjct: 128 MACPFCATGQGGLSRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 174

Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N+  V  ++         G   S R +T+ST G  P I ++ +E +GV LA+S
Sbjct: 175 GMGEPLANYARVVAAVRRIVAAPPQGFGISARSVTVSTVGLAPAIRKLADERLGVTLALS 234

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVP+N ++ +   +DA R+Y  ++   R++ EY +++ +ND P  A  L
Sbjct: 235 LHAPDDELRDTLVPVNNRWKIAEALDAARYYADVTGR-RVSVEYALIRDVNDQPWRADLL 293

Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            + L    G    +NLIP NP PG ++  S +     F   ++ +G S  +R  RG +I 
Sbjct: 294 GQRLHRALGPLVHVNLIPLNPTPGSQWDASPKPVEREFVRRVRAAGVSCTVRDTRGREIS 353

Query: 360 AACGQLK 366
           AACGQL 
Sbjct: 354 AACGQLA 360


>gi|255325234|ref|ZP_05366340.1| radical SAM enzyme, Cfr family [Corynebacterium tuberculostearicum
           SK141]
 gi|255297799|gb|EET77110.1| radical SAM enzyme, Cfr family [Corynebacterium tuberculostearicum
           SK141]
          Length = 366

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 115/374 (30%), Positives = 184/374 (49%), Gaps = 31/374 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L  +    +   E  + L +IG+P    + R  Q+ K  Y     + + M+DI    R  
Sbjct: 12  LPPKHFADLTETERIDKLAEIGLP----KFRAKQLAKHYYEHYTDNVEDMTDIPAGKREA 67

Query: 64  LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           + + F     + +    + DG T K L R     +     +E+V +    R TLC+SSQ 
Sbjct: 68  VKEAFFPELMQPIRTTSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQA 122

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ Q                     + + G ++SN+
Sbjct: 123 GCGMACPFCATGQGGLDRNLSTGEIVEQFRH--------------AAAAMAAEGGRLSNV 168

Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V +++   +  D  G   S+R +T+ST G  P I ++ +E +   L
Sbjct: 169 VFMGMGEPLANYKRVVQAVRQITGQDGAGFGLSQRNVTVSTVGLAPAIRKLADEDLACTL 228

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH   ++LR+ LVP+N ++ ++ ++DA R+Y   S ARR++ EY +++  ND    A
Sbjct: 229 AVSLHTPDDELRDGLVPVNNRWSVDEVLDAARYYADKS-ARRVSIEYALIRDKNDQDFRA 287

Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L + L    G    +N+IP NP PG E+  + Q     F   ++  G    +R  +G 
Sbjct: 288 DMLGRKLHQKLGSKVHVNVIPLNPTPGSEWDAAPQDRQDEFVRRVQAQGVPCTVRDTKGD 347

Query: 357 DILAACGQLKSLSK 370
           +I AACGQL +  +
Sbjct: 348 EIAAACGQLAADER 361


>gi|255016116|ref|ZP_05288242.1| hypothetical protein B2_19608 [Bacteroides sp. 2_1_7]
 gi|256842536|ref|ZP_05548038.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides
           sp. D13]
 gi|256735892|gb|EEU49224.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides
           sp. D13]
          Length = 334

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 128/358 (35%), Positives = 177/358 (49%), Gaps = 29/358 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  EEL+    ++G+P         Q+  WIY + I     M++I+   R LL   F I 
Sbjct: 1   MTLEELKGVASEVGLPA----YAAKQMADWIYKKKITRISEMTNIAVAKRALLEDSFEIG 56

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
                + + S DGT K+L        G    +E+VYIP   R TLCVSSQVGC + C FC
Sbjct: 57  AYPPSEYQKSKDGTIKYLY-----AAGPGRFVESVYIPTDDRATLCVSSQVGCKMNCLFC 111

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG Q    NLTA +IL Q+                           ++NIV MGMGEPL
Sbjct: 112 MTGKQGFTANLTANQILNQI-------------------QSLPENDSLTNIVFMGMGEPL 152

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251
            N D + K L I +   G ++S +RIT+ST G    + R  EE    LA+SLH+     R
Sbjct: 153 DNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVSLHSPYPMER 212

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             L+P+ + +P   +ID  + Y   S+ RR++FEY++ K +NDS + A  L  +L GIP 
Sbjct: 213 LSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEALSCLLGGIPC 271

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           ++NLI F+  P      SD   +  F + +   G    IR  RG DI AACG L +  
Sbjct: 272 RVNLIRFHAIPNVSLETSDIAKMEAFRDFLNAKGVVCTIRASRGEDIFAACGMLSTAK 329


>gi|212695668|ref|ZP_03303796.1| hypothetical protein ANHYDRO_00185 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677341|gb|EEB36948.1| hypothetical protein ANHYDRO_00185 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 343

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 197/371 (53%), Gaps = 30/371 (8%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            + K+++     EELE+  L +G      + R  Q+++ I+V  I DF  M+D+S+++R 
Sbjct: 1   MIMKQTINDKTIEELEKIFLDLGF----KKFRAKQVFRQIHVNKINDFSKMTDLSKKMRE 56

Query: 63  LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            L+++F     ++V E  S  D T+K+L     + I     IE V++   +R T+C+SSQ
Sbjct: 57  DLDKYFYFPKIKVVKEFKSNLDKTKKYLFELDDKNI-----IEAVFMEYNNRNTICISSQ 111

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC +    L R+L+A EI+ ++ L      D                  ISN
Sbjct: 112 VGCRMGCKFCASTKNGLERSLSASEIIEEIYLLERENSD------------------ISN 153

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
           IV+MG+GEPL NF N++K + I +D  G + S R IT+ST G V  I  +      + LA
Sbjct: 154 IVVMGIGEPLDNFSNIEKFIKIITDQKGRNLSHRSITVSTVGLVDKIYDLANLGYDINLA 213

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLH   ++ R   +P   KY ++ +I AC +Y   +   R+++EYV++ G+N+   D  
Sbjct: 214 VSLHYAFDEKRMAYMPSGNKYKIKDIIKACDYYLEKTKR-RVSYEYVVIDGVNNLREDID 272

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L K+ KG    INLIP NP    +Y  +    +  F + + + G ++ IR   G DI A
Sbjct: 273 QLEKLFKGKNIHINLIPLNPIEEFKYSKTKNNVMDQFQQKLTKKGLNATIRRSMGSDIDA 332

Query: 361 ACGQLKSLSKR 371
           +CGQL++   R
Sbjct: 333 SCGQLRNNYAR 343


>gi|226356358|ref|YP_002786098.1| ribosomal RNA large subunit methyltransferase N [Deinococcus
           deserti VCD115]
 gi|259491983|sp|C1CVX7|RLMN_DEIDV RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|226318348|gb|ACO46344.1| conserved hypothetical protein [Deinococcus deserti VCD115]
          Length = 343

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 117/336 (34%), Positives = 173/336 (51%), Gaps = 22/336 (6%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
            R  Q+ +W++V+G+  F  M+++  E R  L + + +     ++   S DG+ K+L   
Sbjct: 17  FRRRQLLEWVFVQGVGTFDAMTNLPAEARAELARSYHLNPFREIETVRSADGSVKYLFTL 76

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                    ++E VY+P   R T+CVS+ VGC   C+FC TG     RNLT  EI+ QVL
Sbjct: 77  TD-----GRQMEAVYMPYLDRKTICVSTMVGCPARCAFCATGAMGFGRNLTPGEIVAQVL 131

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                 G  P              R+I N+V MGMGE + N++N  ++  I      L  
Sbjct: 132 AVAGGEGIGP--------------REIRNLVFMGMGEAMLNYENTMQAARILLHPQALGM 177

Query: 213 SKRRITLSTSGFVPNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
           SKRR+TLST G    I ++   +++G+ LAISLHA   D R  ++P      +  ++ A 
Sbjct: 178 SKRRVTLSTVGIAKGIRQLAAEDDLGIKLAISLHAPDEDTRQRIIPTGAANSIAEIMAAA 237

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330
           R Y  ++   RIT EY ML+GIND    A  L  +L+G+ + +NLIP NPW G  +  S 
Sbjct: 238 RDYQAVTGR-RITLEYTMLRGINDHLWQAELLADVLQGLVSHVNLIPMNPWDGSGFESST 296

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           +  I  F + ++  G    +R  RG D  AACGQL 
Sbjct: 297 EDQIQAFYDTLEARGVDVSVRRSRGKDAGAACGQLA 332


>gi|291279341|ref|YP_003496176.1| hypothetical protein DEFDS_0948 [Deferribacter desulfuricans SSM1]
 gi|290754043|dbj|BAI80420.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 360

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 129/369 (34%), Positives = 208/369 (56%), Gaps = 29/369 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN   K     +   EL+E + ++         R +Q++KWIY +G+  F  M+D+  E 
Sbjct: 1   MNH--KID--NLSLTELKEVVTQL----NEKPFRATQLFKWIYQKGVTSFDEMTDLPLEF 52

Query: 61  RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           R  L ++FS     +V++  S  DG+ K L R           IE+V + +  R T C+S
Sbjct: 53  RKKLIENFSFTKLTVVEQLESQLDGSIKVLFRLEDDNF-----IESVLMFDGKRVTACLS 107

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +QVGC + C FC T    L+RNLT+ EI+ Q++  R+L                +  + +
Sbjct: 108 TQVGCRMGCQFCNTAKIGLIRNLTSAEIIRQIIYLRNL--------------AETKKKPL 153

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +N+V MGMGEPL NFDN+ KSL I  +   L+FS R++T+ST G +  +  + +   V +
Sbjct: 154 TNLVFMGMGEPLDNFDNLTKSLDIILNEEALNFSHRKVTVSTCGIMDKLNLLAKHYKVNI 213

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           AISL+AV+N +R+ L+P+N++YP+E +I+  +  P +   +RIT EYV++ G+N++ +DA
Sbjct: 214 AISLNAVTNKIRSKLMPVNKRYPIEEIINGIKKLP-IPKRKRITLEYVLIDGLNNTTKDA 272

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+K LKG+P K+NLI +N     ++        + F + +  +G ++ IR   G DI 
Sbjct: 273 NLLVKQLKGLPIKVNLILYNKTKLSDFHSPQLNYALNFQKTLINNGIATFIRKSFGQDIE 332

Query: 360 AACGQLKSL 368
           AACGQL + 
Sbjct: 333 AACGQLYAK 341


>gi|296454242|ref|YP_003661385.1| Cfr family radical SAM enzyme [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183673|gb|ADH00555.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 389

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 188/374 (50%), Gaps = 28/374 (7%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L    M  E+  E   ++G+P    + R  Q+    +     +    +D     R  
Sbjct: 35  KPPLHFADMTPEQRIEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               F       V  +++ +GT  K L +     +     IE+V +   +R TLC+SSQV
Sbjct: 91  AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++  EI+ QV +A  ++ D           +     ++SNI
Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNI 196

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+++V  ++   S     G   S R IT+ST G VP I ++  E I V L
Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++    ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L       A +N IP NP  G ++  S   D   F E + R+G ++ +R  RG 
Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPGDEQRFLEILHRAGITATLRDTRGQ 375

Query: 357 DILAACGQLKSLSK 370
           DI  ACGQL +  +
Sbjct: 376 DIDGACGQLAAKER 389


>gi|301166181|emb|CBW25756.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 352

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 133/365 (36%), Positives = 199/365 (54%), Gaps = 23/365 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S   +  +EL  +L + G+      +    ++ W Y +         +IS+  +  L+
Sbjct: 10  KRSFYNLNYDELVTSLQEEGLGTSAASL----LYNWHYKKKQSSP-CTHNISKATQKFLS 64

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F    PEI +  IS D T K+L +          ++E+V IP  ++ ++C+SSQVGC+
Sbjct: 65  DNFDFSLPEIDEVHISDDRTVKFLFKLHDSS-----KVESVLIPFHNKYSICLSSQVGCA 119

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC+TGTQ L RNL   EIL Q L A   L +    E            +I NIV M
Sbjct: 120 MKCSFCFTGTQGLKRNLETSEILGQFLAAWRWLAENRPGE-----------ERILNIVFM 168

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
           G GEPL NFD VK++  I     G S   ++IT+STSG++P + R  EEI  V LA+SLH
Sbjct: 169 GQGEPLHNFDAVKRACEIFLSKNGASIGTQKITISTSGYLPGLKRWEEEIPGVNLALSLH 228

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +   + RN L+P+N+KY L  ++        L   + IT+EY+++K  NDS  DA  + +
Sbjct: 229 SPFEEKRNELIPVNKKYSLPEVLKHIDS-ITLQKKQFITYEYLLIKDFNDSVEDARAVGE 287

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +LKG  A IN+IPFNP+PG +Y      ++++F   I      + +R  +G D+LAACGQ
Sbjct: 288 LLKGKEAYINIIPFNPFPGSKYKRPSDNEVLSFKSIIDEYKIPTLVRITKGDDVLAACGQ 347

Query: 365 LKSLS 369
           L + S
Sbjct: 348 LNTKS 352


>gi|302800564|ref|XP_002982039.1| hypothetical protein SELMODRAFT_179299 [Selaginella moellendorffii]
 gi|300150055|gb|EFJ16707.1| hypothetical protein SELMODRAFT_179299 [Selaginella moellendorffii]
          Length = 425

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 194/372 (52%), Gaps = 36/372 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67
           L+G   +EL++   ++G      R R  Q++  +Y     + Q  +++S+  R  L ++ 
Sbjct: 73  LLGKSEKELQDLCEEMG----EKRFRGKQMYLLLYKVRKAEIQEFTNLSKGFREKLISEG 128

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP---EKSRGTLCVSSQVGC 124
           + +    I  +  S DGT K LL+     +     IETV IP   E +R T+CVSSQVGC
Sbjct: 129 WEVGRSPIHHKVNSVDGTIKVLLKLKDSRL-----IETVGIPADEENNRLTVCVSSQVGC 183

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC TG     R+L   EI+ QVL+   +                    ++SN+V 
Sbjct: 184 PLRCAFCATGKGGFTRSLKPHEIIEQVLVMEEIFKQ-----------------RVSNVVF 226

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
           MGMGEP+ N  +V  +    ++   +   +R IT+ST G   +I ++   ++   LA+SL
Sbjct: 227 MGMGEPMLNMASVLAAHRCLNED--IGIGQRMITISTVGVPNSIRKLAAHKLQSTLAVSL 284

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +  LR  +VP  + YPL+ L++ C+ Y  ++   R++FEY +L G+NDS   A  L 
Sbjct: 285 HAPNQRLREQIVPSAKSYPLDALMEDCKEYFSITGR-RVSFEYTLLAGVNDSKELAFELG 343

Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           ++L    +   +NLIP+NP     +    QK + TF E + +   ++ +R  RGLD  AA
Sbjct: 344 ELLHHWDMSHHVNLIPYNPVADSLFQRPWQKSVQTFVETLAKCRVNASVRQTRGLDANAA 403

Query: 362 CGQLKSLSKRIP 373
           CGQL++  ++ P
Sbjct: 404 CGQLRNQFQKTP 415


>gi|258645365|ref|ZP_05732834.1| radical SAM enzyme, Cfr family [Dialister invisus DSM 15470]
 gi|260402714|gb|EEW96261.1| radical SAM enzyme, Cfr family [Dialister invisus DSM 15470]
          Length = 345

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 121/364 (33%), Positives = 192/364 (52%), Gaps = 27/364 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K ++ G+  +ELE  ++  G P    R R  Q+  ++Y R I  F  M+  SQ++R  L 
Sbjct: 2   KRNIWGLNLQELETWVVGNGFP----RFRAKQLRDYLYKRHIFHFDEMTQFSQKMRDWLK 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           ++  I  P I+    S D   K +       +     +ETV +      ++CVS+QVGC+
Sbjct: 58  ENGQIDKPVIISRAQSDD--EKTI--KLLLKLKDGSLVETVCMCHHYGNSICVSTQVGCA 113

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC +  + L RNLTA EIL Q+   + L                       +IV+M
Sbjct: 114 MGCIFCASTRKGLERNLTAGEILAQMYAFKELY-----------------DIPFHSIVLM 156

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G GEPL N+  V   + +A+D   L+ S R IT+ST G VP I R+ +E I + LAISLH
Sbjct: 157 GAGEPLTNYKEVLHFIHLANDPELLNISYRNITISTCGIVPQIYRLADENIPITLAISLH 216

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ +RN+LVPI++ + ++ ++ A  +Y   +   R+TFEY+++K +N S  +A  L +
Sbjct: 217 APNDRIRNVLVPISKNFRIKDVVSAAEYYFKKTKR-RVTFEYILIKDMNASVENAKELCR 275

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++  +P  INLIP N     +    + K+I  F + + + G  + +R   G +I AACGQ
Sbjct: 276 LIGKMPCHINLIPINSTEHIKLYPPEWKEIKRFQDILLKKGKETTVRKQMGDEIQAACGQ 335

Query: 365 LKSL 368
           LK  
Sbjct: 336 LKRR 339


>gi|302844849|ref|XP_002953964.1| hypothetical protein VOLCADRAFT_121224 [Volvox carteri f.
           nagariensis]
 gi|300260776|gb|EFJ44993.1| hypothetical protein VOLCADRAFT_121224 [Volvox carteri f.
           nagariensis]
          Length = 438

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 186/371 (50%), Gaps = 34/371 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLN 65
            +++G    ELE+   + G P    R R  Q+ + + ++G    + ++ I +  R  LL 
Sbjct: 90  ITILGSELTELEDLAERYGQP----RFRAKQLLEGV-LKGAHSVEEITAIPKSWRAQLLA 144

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                    +       DGTRK+LL+     I     +ETV IP + R T+CVSSQVGC 
Sbjct: 145 DGVRSGRSRLHHSVGDEDGTRKFLLQLHDGRI-----VETVGIPTEDRLTVCVSSQVGCP 199

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TG     RNL   EIL QVL  +  LG                 R++SN+V M
Sbjct: 200 MRCTFCATGKGGFARNLAPHEILDQVLTVQEQLG-----------------RRVSNVVFM 242

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N   V ++    +  +G       IT+ST G    I R+    +   LA+SLH
Sbjct: 243 GMGEPLLNLPAVVRAYQGLNQQVG--IGGAFITISTVGVPNAIPRLAASSLKATLAVSLH 300

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +  LR  L+P  + YPLE LI  C  Y  ++   R+TFEY +L G+ND    A  L  
Sbjct: 301 APNQALRERLIPSAKAYPLEALIQDCVTYYRITGR-RVTFEYTLLSGVNDELEHARELTA 359

Query: 305 ILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +L+   + + +N+IP+NP    E++   +  +  F   ++ +G +  +R  RGL+  AAC
Sbjct: 360 LLRRHDLMSHVNIIPWNPVDESEFVRPSRNRVFAFRRAVEAAGLACTVRETRGLEAAAAC 419

Query: 363 GQLKSLSKRIP 373
           GQL++  ++ P
Sbjct: 420 GQLRNRFQKQP 430


>gi|260171514|ref|ZP_05757926.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp.
           D2]
          Length = 322

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 124/338 (36%), Positives = 185/338 (54%), Gaps = 25/338 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
               QI  W+Y + +     M+++S + R LL Q++ +     VDE  S DGT K+L + 
Sbjct: 4   FTAKQIVSWLYEKKVASIDEMTNLSLKHRELLKQNYEVGAAAPVDEMRSVDGTVKYLYK- 62

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               +G    +E+VYIP+  R TLCVSSQVGC + C FC TG Q    NLTA +I+ Q+ 
Sbjct: 63  ----VGENHFVESVYIPDDDRATLCVSSQVGCKMNCKFCMTGKQGYTANLTASQIINQI- 117

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                                    K++N+VMMGMGEPL N D V K+L + + + G ++
Sbjct: 118 ------------------HSLPERDKLTNVVMMGMGEPLDNLDEVLKALELLTANYGYAW 159

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S +RITLST G    + R  EE    LAISLH+     R+ L+P  R Y +  +++  ++
Sbjct: 160 SPKRITLSTVGLRKGLQRFIEENDCHLAISLHSPLTAQRSELMPAERAYSITEMVELLKN 219

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y   S  RR++FEY++ KG+NDS   A  L+K+L+G+  ++NLI F+  PG +   +D  
Sbjct: 220 Y-DFSKQRRLSFEYIVFKGLNDSQVYAKELLKLLRGLDCRVNLIRFHAIPGVDLEGADMD 278

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
            +  F + +   G  + IR+ RG DI AACG L +  +
Sbjct: 279 TMTRFRDYLTSHGLFTTIRSSRGEDIFAACGMLSTAKQ 316


>gi|293189850|ref|ZP_06608564.1| radical SAM enzyme, Cfr family [Actinomyces odontolyticus F0309]
 gi|292821265|gb|EFF80210.1| radical SAM enzyme, Cfr family [Actinomyces odontolyticus F0309]
          Length = 426

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 184/377 (48%), Gaps = 32/377 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L  +     ++ L  +G+P      R  Q+ +  +     D   MSDI   +   ++  
Sbjct: 65  HLADLDAVARKQVLKDLGLPA----FRADQLSRHYFTHFEADPANMSDIPAGMHEAVSDA 120

Query: 68  FSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
              + P++V + +S   DG  T K L R          ++E+V +    R TLCVSSQ G
Sbjct: 121 ---LLPKLVTKVVSLEADGGRTIKDLWRLYD-----GAQVESVLMRYPQRTTLCVSSQAG 172

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG   L RNL+  EI+ QV  A++   D           +     K+SN+V
Sbjct: 173 CGMACPFCATGQMGLTRNLSTAEIVDQVREAQASCRD---------GKLAGGPTKLSNVV 223

Query: 184 MMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
            MGMGEPL N+  V  +L    D    G   S R IT+ST G VP I ++  E + V LA
Sbjct: 224 FMGMGEPLANYKTVVAALHRLIDPAPEGFGMSARNITVSTVGLVPAIKKLAGEGMPVTLA 283

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA  +DLR+ L+PIN ++ +  L+DA R Y  L+  RR++ EY ++K +ND    A 
Sbjct: 284 VSLHAPDDDLRDELIPINSRWKVGELLDAARGYF-LATGRRVSIEYALIKNMNDQEWRAQ 342

Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L   L         +N IP NP PG  +  S +     F + ++ +G ++ IR  RG D
Sbjct: 343 LLADELNKRGHGWVHVNPIPLNPTPGSIWTASTRAAQEAFVKRLQDNGIATSIRDTRGSD 402

Query: 358 ILAACGQLKSLSKRIPK 374
           I  ACGQL +      +
Sbjct: 403 IDGACGQLATAVADGKR 419


>gi|154509153|ref|ZP_02044795.1| hypothetical protein ACTODO_01674 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798787|gb|EDN81207.1| hypothetical protein ACTODO_01674 [Actinomyces odontolyticus ATCC
           17982]
          Length = 406

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 185/377 (49%), Gaps = 32/377 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L  +     ++ L  +G+P      R  Q+ +  +     D   MSDI   +   ++  
Sbjct: 45  HLADLDAVARKQVLKDLGLPA----FRADQLSRHYFTHFQADPANMSDIPAGMHEAVSDA 100

Query: 68  FSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
              + P++V + +S   DG  T K L R          ++E+V +    R TLCVSSQ G
Sbjct: 101 ---LLPKLVTKVVSLEADGGRTIKDLWRLYD-----GAQVESVLMRYPQRTTLCVSSQAG 152

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG   L RNL+  EI+ QV  A++   D           +     K+SN+V
Sbjct: 153 CGMACPFCATGQMGLTRNLSTAEIVDQVREAQASCRD---------GKLAGGPTKLSNVV 203

Query: 184 MMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
            MGMGEPL N+  V  +L    D    G   S R IT+ST G VP I ++  E + V LA
Sbjct: 204 FMGMGEPLANYKTVVAALHRLIDPAPEGFGMSARNITVSTVGLVPAIKKLAGEGMPVTLA 263

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA  +DLR+ L+PIN ++ +  L+DA R Y  L+  RR++ EY ++K +ND    A 
Sbjct: 264 VSLHAPDDDLRDELIPINSRWKVGELLDAARGYF-LATGRRVSIEYALIKDMNDQEWRAQ 322

Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L   L         +N IP NP PG  +  S +     F + ++ +G ++ IR  RG D
Sbjct: 323 LLADELNKRGHGWVHVNPIPLNPTPGSIWTASTRAAQEAFVKRLQDNGIATSIRDTRGSD 382

Query: 358 ILAACGQLKSLSKRIPK 374
           I  ACGQL ++     +
Sbjct: 383 IDGACGQLATVVADGKR 399


>gi|291518520|emb|CBK73741.1| 23S rRNA m(2)A-2503 methyltransferase [Butyrivibrio fibrisolvens
           16/4]
          Length = 361

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 110/345 (31%), Positives = 180/345 (52%), Gaps = 30/345 (8%)

Query: 2   NFLKKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           N  +   +  +   EL + +   +G P    + R  Q+++W++     D+  M +I + +
Sbjct: 3   NEKELTDIRSLNLTELTDFVTTDLGEP----KFRAKQLYEWMHQHLALDYDEMKNIPKSL 58

Query: 61  RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           +  L  + +    + VD +IS  DGTRK+L             +E+V++  K   ++C+S
Sbjct: 59  KEKLVANCNYHPLKKVDLQISKIDGTRKYLFELYD-----GQMVESVWMSYKHGNSVCIS 113

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC + C FC +     VRNLT  E+L Q+   +   G+                 ++
Sbjct: 114 SQVGCKMGCRFCASTLDGWVRNLTPSEMLGQIYAIQRDTGE-----------------RV 156

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           SN+V+MG GEP+ N+DN+ K + + SD  GL+ S+R IT+ST G VP I ++ EE + + 
Sbjct: 157 SNLVVMGTGEPMDNYDNIVKFVRLLSDENGLNISQRNITVSTCGIVPRIKQLAEEDLTIT 216

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLHA +   R  L+P+  KY +  LIDAC +Y   +   RITFEY ++ G+ND   D
Sbjct: 217 LAISLHAPNQQKRAELMPVANKYEIHELIDACEYYFNKTGR-RITFEYSLVGGVNDRDED 275

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343
           A  L +++  +   +NLIP NP    +++         F + +K 
Sbjct: 276 AAELGQLIGHLNCHVNLIPVNPIKERDFVSPSMDRAYAFQKRLKN 320


>gi|328752153|gb|EGF65769.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL020PA1]
          Length = 405

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           I +  EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  +   + 
Sbjct: 44  IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99

Query: 70  IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
            +    V ++ SCD   T K L R       G   +E+V +   +      R TLC+SSQ
Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHTAARATLCLSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   + RN++  EI+ QVL A  L         I    +P    ++ N
Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEP+ N+ +V  ++   +     G+  S R +TLST G VP I  + +E I V 
Sbjct: 205 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 264

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ L+P+NR++ ++ L+DA  HY   +   R++ EY ++K IND    
Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 323

Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           A  L + ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  R
Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 383

Query: 355 GLDILAACGQLKSLSK 370
           G +I  ACGQL ++ +
Sbjct: 384 GSEIDGACGQLAAVGR 399


>gi|327334229|gb|EGE75943.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL097PA1]
          Length = 405

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           I +  EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  +   + 
Sbjct: 44  IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99

Query: 70  IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
            +    V ++ SCD   T K L R       G   +E+V +   +      R TLC+SSQ
Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   + RN++  EI+ QVL A  L         I    +P    ++ N
Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEP+ N+ +V  ++   +     G+  S R +TLST G VP I  + +E I V 
Sbjct: 205 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 264

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ L+P+NR++ ++ L+DA  HY   +   R++ EY ++K IND    
Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 323

Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           A  L + ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  R
Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 383

Query: 355 GLDILAACGQLKSLSK 370
           G +I  ACGQL ++ +
Sbjct: 384 GSEIDGACGQLAAVGR 399


>gi|314978904|gb|EFT22998.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL072PA2]
 gi|315089293|gb|EFT61269.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL072PA1]
          Length = 405

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           I +  EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  +   + 
Sbjct: 44  IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99

Query: 70  IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
            +    V ++ SCD   T K L R       G   +E+V +   +      R TLC+SSQ
Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   + RN++  EI+ QVL A  L         I    +P    ++ N
Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEP+ N+ +V  ++   +     G+  S R +TLST G VP I  + +E I V 
Sbjct: 205 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 264

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ L+P+NR++ ++ L+DA  HY   +   R++ EY ++K IND    
Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 323

Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           A  L + ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  R
Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 383

Query: 355 GLDILAACGQLKSLSK 370
           G +I  ACGQL ++ +
Sbjct: 384 GSEIDGACGQLAAVGR 399


>gi|313829419|gb|EFS67133.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL063PA2]
 gi|315108996|gb|EFT80972.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL030PA2]
          Length = 418

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           I +  EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  +   + 
Sbjct: 57  IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 112

Query: 70  IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
            +    V ++ SCD   T K L R       G   +E+V +   +      R TLC+SSQ
Sbjct: 113 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 166

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   + RN++  EI+ QVL A  L         I    +P    ++ N
Sbjct: 167 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 217

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEP+ N+ +V  ++   +     G+  S R +TLST G VP I  + +E I V 
Sbjct: 218 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 277

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ L+P+NR++ ++ L+DA  HY   +   R++ EY ++K IND    
Sbjct: 278 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 336

Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           A  L + ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  R
Sbjct: 337 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 396

Query: 355 GLDILAACGQLKSLSK 370
           G +I  ACGQL ++ +
Sbjct: 397 GSEIDGACGQLAAVGR 412


>gi|289426335|ref|ZP_06428078.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK187]
 gi|295131063|ref|YP_003581726.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK137]
 gi|289153063|gb|EFD01781.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK187]
 gi|291376435|gb|ADE00290.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK137]
          Length = 406

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           I +  EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  +   + 
Sbjct: 45  IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 100

Query: 70  IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
            +    V ++ SCD   T K L R       G   +E+V +   +      R TLC+SSQ
Sbjct: 101 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 154

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   + RN++  EI+ QVL A  L         I    +P    ++ N
Sbjct: 155 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 205

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEP+ N+ +V  ++   +     G+  S R +TLST G VP I  + +E I V 
Sbjct: 206 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 265

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ L+P+NR++ ++ L+DA  HY   +   R++ EY ++K IND    
Sbjct: 266 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 324

Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           A  L + ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  R
Sbjct: 325 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 384

Query: 355 GLDILAACGQLKSLSK 370
           G +I  ACGQL ++ +
Sbjct: 385 GSEIDGACGQLAAVGR 400


>gi|50842992|ref|YP_056219.1| hypothetical protein PPA1514 [Propionibacterium acnes KPA171202]
 gi|81611434|sp|Q6A7K4|RLMN_PROAC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|50840594|gb|AAT83261.1| conserved protein [Propionibacterium acnes KPA171202]
 gi|313763570|gb|EFS34934.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL013PA1]
 gi|313773509|gb|EFS39475.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL074PA1]
 gi|313793963|gb|EFS41987.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA1]
 gi|313801350|gb|EFS42601.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA2]
 gi|313807970|gb|EFS46451.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL087PA2]
 gi|313811561|gb|EFS49275.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL083PA1]
 gi|313819539|gb|EFS57253.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL046PA2]
 gi|313822138|gb|EFS59852.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL036PA1]
 gi|313823628|gb|EFS61342.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL036PA2]
 gi|313825952|gb|EFS63666.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL063PA1]
 gi|313831301|gb|EFS69015.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL007PA1]
 gi|313834912|gb|EFS72626.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL056PA1]
 gi|313839929|gb|EFS77643.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL086PA1]
 gi|314914724|gb|EFS78555.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA4]
 gi|314919314|gb|EFS83145.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL050PA1]
 gi|314920776|gb|EFS84607.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL050PA3]
 gi|314924723|gb|EFS88554.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL036PA3]
 gi|314930455|gb|EFS94286.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL067PA1]
 gi|314954388|gb|EFS98794.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL027PA1]
 gi|314957479|gb|EFT01582.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL002PA1]
 gi|314962106|gb|EFT06207.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL002PA2]
 gi|314963685|gb|EFT07785.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL082PA1]
 gi|314968487|gb|EFT12585.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL037PA1]
 gi|314974177|gb|EFT18273.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL053PA1]
 gi|314976533|gb|EFT20628.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL045PA1]
 gi|314984352|gb|EFT28444.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA1]
 gi|314986542|gb|EFT30634.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA2]
 gi|314990901|gb|EFT34992.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA3]
 gi|315079535|gb|EFT51528.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL053PA2]
 gi|315083603|gb|EFT55579.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL027PA2]
 gi|315087120|gb|EFT59096.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL002PA3]
 gi|315095316|gb|EFT67292.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL038PA1]
 gi|315100320|gb|EFT72296.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL046PA1]
 gi|315106754|gb|EFT78730.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL030PA1]
 gi|327328421|gb|EGE70183.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL096PA2]
 gi|327329713|gb|EGE71469.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL096PA3]
 gi|327444208|gb|EGE90862.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL043PA2]
 gi|327444913|gb|EGE91567.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL043PA1]
 gi|327446398|gb|EGE93052.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL013PA2]
 gi|327452014|gb|EGE98668.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL092PA1]
 gi|327454949|gb|EGF01604.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL087PA3]
 gi|327457765|gb|EGF04420.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL083PA2]
 gi|328755218|gb|EGF68834.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL087PA1]
 gi|328758303|gb|EGF71919.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL025PA2]
 gi|328760026|gb|EGF73607.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL099PA1]
 gi|332675942|gb|AEE72758.1| ribosomal RNA large subunit methyltransferase N [Propionibacterium
           acnes 266]
          Length = 405

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           I +  EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  +   + 
Sbjct: 44  IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99

Query: 70  IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
            +    V ++ SCD   T K L R       G   +E+V +   +      R TLC+SSQ
Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   + RN++  EI+ QVL A  L         I    +P    ++ N
Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEP+ N+ +V  ++   +     G+  S R +TLST G VP I  + +E I V 
Sbjct: 205 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 264

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ L+P+NR++ ++ L+DA  HY   +   R++ EY ++K IND    
Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 323

Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           A  L + ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  R
Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 383

Query: 355 GLDILAACGQLKSLSK 370
           G +I  ACGQL ++ +
Sbjct: 384 GSEIDGACGQLAAVGR 399


>gi|302766119|ref|XP_002966480.1| hypothetical protein SELMODRAFT_85220 [Selaginella moellendorffii]
 gi|300165900|gb|EFJ32507.1| hypothetical protein SELMODRAFT_85220 [Selaginella moellendorffii]
          Length = 425

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 194/372 (52%), Gaps = 36/372 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67
           L+G   ++L++   ++G      R R  Q++  +Y     + Q  +++S+  R  L ++ 
Sbjct: 73  LLGKSEKQLQDLCEEMG----EKRFRGKQMYLLLYKVRKAEIQEFTNLSKGFREKLISEG 128

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP---EKSRGTLCVSSQVGC 124
           + +    I  +  S DGT K LL+     +     IETV IP   E +R T+CVSSQVGC
Sbjct: 129 WEVGRSPIHHKVNSVDGTIKVLLKLKDSRL-----IETVGIPADEENNRLTVCVSSQVGC 183

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC TG     R+L   EI+ QVL+   +                    ++SN+V 
Sbjct: 184 PLRCAFCATGKGGFTRSLKPHEIIEQVLVMEEIFKQ-----------------RVSNVVF 226

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
           MGMGEP+ N  +V  +    ++   +   +R IT+ST G   +I ++   ++   LA+SL
Sbjct: 227 MGMGEPMLNMASVLAAHRCLNED--IGIGQRMITISTVGVPNSIRKLAAHKLQSTLAVSL 284

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +  LR  +VP  + YPL+ L++ C+ Y  ++   R++FEY +L G+NDS   A  L 
Sbjct: 285 HAPNQRLREQIVPSAKSYPLDALMEDCKEYFSITGR-RVSFEYTLLAGVNDSKELAFELG 343

Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           ++L    +   +NLIP+NP     +    QK + TF E + +   ++ +R  RGLD  AA
Sbjct: 344 ELLHHWDMSHHVNLIPYNPVADSLFQRPWQKSVQTFVETLAKCRVNASVRQTRGLDANAA 403

Query: 362 CGQLKSLSKRIP 373
           CGQL++  ++ P
Sbjct: 404 CGQLRNQFQKTP 415


>gi|297823853|ref|XP_002879809.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297325648|gb|EFH56068.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 419

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 124/385 (32%), Positives = 189/385 (49%), Gaps = 36/385 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
           LIGM   EL++  + + +       R  Q+   IY R +   +  S++ Q  R  L +  
Sbjct: 52  LIGMSEPELQQLAINL-VLIFQEGYRGKQLHHLIYKRKVNKVEDFSNLPQTFRKELVEGG 110

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
           F +    I     + DGT K         +   + IETV IP +       R T CVSSQ
Sbjct: 111 FKVGRSPIYQTVTATDGTIK-----LLLKLEDNLLIETVGIPVQDDEKGITRLTACVSSQ 165

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC L CSFC TG     RNL   EI+ QVL    +                    +++N
Sbjct: 166 VGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKH-----------------RVTN 208

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
           +V MGMGEP+ N  +V  +    +    +   +R IT+ST G    I ++   ++   LA
Sbjct: 209 VVFMGMGEPMLNLKSVLDAHRCLNKD--IEIGQRMITISTVGVPNTIKKLASHKLQSTLA 266

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +  LR  +VP  + YPLE ++  CR Y   +N  R++FEY +L G+ND    A+
Sbjct: 267 VSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETNR-RVSFEYALLAGVNDQVEHAV 325

Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
            L ++L+  G    +NLIP+NP  G EY    +K ++ F+  ++    ++ +R  RGLD 
Sbjct: 326 ELAELLREWGKTYHVNLIPYNPIEGSEYKRPYKKAVLAFASALESRKITASVRQTRGLDA 385

Query: 359 LAACGQLKSLSKRIPKVPRQEMQIT 383
            AACGQL++  ++ P V   + Q +
Sbjct: 386 SAACGQLRNKFQKSPLVTETDGQES 410


>gi|301167934|emb|CBW27519.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 356

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 137/372 (36%), Positives = 208/372 (55%), Gaps = 24/372 (6%)

Query: 4   LKKE--SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           + K+  SL  +  EEL E L + G      +    Q++ WI+ R   DF   S++S +++
Sbjct: 1   MAKKEVSLYSLTLEELREYLKEQGF----AKFAADQVYNWIFKRYEFDFDKWSNVSGKIK 56

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSS 120
               ++     P++V   +S DGTRK+L+      +     +E V IP K+ R TLCVSS
Sbjct: 57  KHFEENLDTFLPKVVWNGLSKDGTRKFLI-----GMNDSNTVEAVAIPAKNNRLTLCVSS 111

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q+GC++ C+FC+TGT  L R+LT  E++ Q L     L +    E            +++
Sbjct: 112 QIGCAIGCTFCHTGTMGLTRHLTTGEVVGQYLAVTKWLRENVDEEA-----------RLT 160

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           NIV MG GEPL NF+NVK++  +  +  G+   +R+ITLSTSG VP I ++ +   V +A
Sbjct: 161 NIVYMGQGEPLHNFNNVKQATKVFMEEKGIGLGQRKITLSTSGLVPQIEKLQDFPPVNVA 220

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA  N++R  L+PIN+ Y L  L +A R  P  ++   IT+EY+++  +ND   D  
Sbjct: 221 ISLHAAHNNIRTELMPINKAYDLTRLFEAIRKIPLKAHRW-ITYEYILIADLNDRVEDLD 279

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L  +L    +K+NLIPFN +P  ++     + I  F + + R GY    RT +G DILA
Sbjct: 280 GLSDLLDKKVSKVNLIPFNEYPESKFKRPSDEKIKWFQDELNRRGYICTTRTTKGTDILA 339

Query: 361 ACGQLKSLSKRI 372
           ACGQLKS   ++
Sbjct: 340 ACGQLKSEHDKL 351


>gi|224437065|ref|ZP_03658046.1| hypothetical protein HcinC1_03815 [Helicobacter cinaedi CCUG 18818]
 gi|313143537|ref|ZP_07805730.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128568|gb|EFR46185.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 372

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 143/393 (36%), Positives = 213/393 (54%), Gaps = 39/393 (9%)

Query: 1   MNFLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
           M  L+ K SL      EL+  L            R  Q++ W+Y R   +   M +IS+ 
Sbjct: 1   MGILESKPSLYAYTLNELKSLL--------SPSFRAKQVYHWLYHRYENNIALMDNISKA 52

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI--------ETVYIPEK 111
           ++  L  HF I     V  + S DG++K+L +         V I        E+  I + 
Sbjct: 53  MQEHLQSHFIISQITPVQIEKSSDGSKKYLFQTKDGHTFESVLIQMKSKELDESGEIVKG 112

Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
            + T+C+SSQ+GC + C+FC+T     VRNL A EI+ QV++ +      P         
Sbjct: 113 EKWTMCLSSQIGCKVGCAFCFTAKGGFVRNLNAGEIVEQVVMMKRDSNIAP--------- 163

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
                 K  NIV MGMGEPL N  NV +++ I ++  GLS S RR T+STSG  P I  +
Sbjct: 164 -----NKRVNIVYMGMGEPLHNLANVSQAIKILAELDGLSISARRQTISTSGIAPKIKEL 218

Query: 232 GE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
           GE  +GV LAISLHAVS++LR+ L+PIN+ Y +  +++  R +P + + +R+ FEY+M+K
Sbjct: 219 GELNLGVQLAISLHAVSDELRSKLMPINKAYNIAEVLNEVRAFP-VDSRKRVMFEYLMIK 277

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           G+ND  + A  L+ +L GI AK+NLI FNP  G E+     +D+  F++ + + G    I
Sbjct: 278 GVNDDIKAAKKLLALLNGIKAKVNLILFNPHEGSEFERPLMEDVRAFADFLVKKGLLCTI 337

Query: 351 RTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
           R  +G+DI AACGQL+       K+ R+  +IT
Sbjct: 338 RESKGIDISAACGQLR------EKIKRENGEIT 364


>gi|218461404|ref|ZP_03501495.1| hypothetical protein RetlK5_18727 [Rhizobium etli Kim 5]
          Length = 278

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 192/267 (71%), Positives = 222/267 (83%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           TLC+SSQVGC+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+
Sbjct: 1   TLCISSQVGCTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPA 60

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
            GRK+SNIVMMGMGEPL NFD VK++L IA+D  GLS SKRR+TLSTSG VP I R GEE
Sbjct: 61  EGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEE 120

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           IGVMLAISLHAV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +ND
Sbjct: 121 IGVMLAISLHAVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVND 180

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           S  DA  LIK+LKG+PAKINLIPFNPWPG  Y CSD + I  F++ I  +GY+SPIRTPR
Sbjct: 181 SLEDARGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPR 240

Query: 355 GLDILAACGQLKSLSKRIPKVPRQEMQ 381
           G DILAACGQLKS S+R+ K  R   +
Sbjct: 241 GRDILAACGQLKSESERMRKTERLAFE 267


>gi|320096228|ref|ZP_08027813.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319976833|gb|EFW08591.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 399

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 183/374 (48%), Gaps = 32/374 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L  +     +  L  +G+P      R  Q+ +  + R   D   MSDI   +R  +   
Sbjct: 35  HLADLDAAGRKAVLAGMGLPP----FRADQLSRHYFERFEADPADMSDIPASMRQRVRDS 90

Query: 68  FSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
              + P +V   +S   D   T K L R          ++E+V +    R TLCVSSQ G
Sbjct: 91  ---LLPPLVSGVVSLRADAGRTVKDLWRLYD-----GAQVESVLMRYPQRTTLCVSSQAG 142

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG   L RNL+  EI+ QV LA++   D           +     +++N+V
Sbjct: 143 CGMACPFCATGQMGLTRNLSTAEIVDQVRLAQAACRD---------GALAGGPTRLTNVV 193

Query: 184 MMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
            MGMGEPL N+  V  +L    D    G   S R +T+ST G VP I R+  E + V LA
Sbjct: 194 FMGMGEPLANYKTVVGALHRLVDPVPEGFGMSARNVTVSTVGLVPAIRRLAGEGLPVTLA 253

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA  +DLR+ L+P+N ++ +  L+DA RHY  ++   R++ EY ++K +ND    A 
Sbjct: 254 VSLHAPDDDLRDDLIPVNSRWKVGELLDAARHYFLVTGR-RVSIEYALIKDMNDQVWRAQ 312

Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L   L       A +N IP NP PG  +  S ++    F   ++ +G  + IR  RG D
Sbjct: 313 LLADELNRRGKGWAHVNPIPLNPTPGSIWTASTRRSQDAFVATLRDNGVVTSIRDTRGSD 372

Query: 358 ILAACGQLKSLSKR 371
           I  ACGQL + + +
Sbjct: 373 IDGACGQLATSAAK 386


>gi|289428733|ref|ZP_06430416.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J165]
 gi|289158131|gb|EFD06351.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J165]
          Length = 376

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           I +  EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  +   + 
Sbjct: 15  IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 70

Query: 70  IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
            +    V ++ SCD   T K L R       G   +E+V +   +      R TLC+SSQ
Sbjct: 71  PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 124

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   + RN++  EI+ QVL A  L         I    +P    ++ N
Sbjct: 125 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 175

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEP+ N+ +V  ++   +     G+  S R +TLST G VP I  + +E I V 
Sbjct: 176 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 235

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ L+P+NR++ ++ L+DA  HY   +   R++ EY ++K IND    
Sbjct: 236 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 294

Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           A  L + ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  R
Sbjct: 295 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 354

Query: 355 GLDILAACGQLKSLSK 370
           G +I  ACGQL ++ +
Sbjct: 355 GSEIDGACGQLAAVGR 370


>gi|314923760|gb|EFS87591.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL001PA1]
 gi|314966226|gb|EFT10325.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL082PA2]
 gi|314981992|gb|EFT26085.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA3]
 gi|315090903|gb|EFT62879.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA4]
 gi|315095116|gb|EFT67092.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL060PA1]
 gi|315104345|gb|EFT76321.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL050PA2]
 gi|327328106|gb|EGE69875.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL103PA1]
          Length = 405

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           I +  EE  +A+  +G+P      R  QI   ++ R   D    +D+ +  R  +   + 
Sbjct: 44  IDLSIEERVQAVKDLGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99

Query: 70  IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
            +    V ++ SCD   T K L R       G   +E+V +   +      R TLC+SSQ
Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARTTLCLSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   + RN++  EI+ QVL A  L         I    +P    ++ N
Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEP+ N+ +V  ++   +     G+  S R +TLST G VP I  + +E I V 
Sbjct: 205 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 264

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ L+P+NR++ ++ L+DA  HY   +   R++ EY ++K IND    
Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 323

Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           A  L + ++       A +NLIP NP PG  +  S   D   F E ++R      +R  R
Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPADQDAFVETLERWKIPVTVRDTR 383

Query: 355 GLDILAACGQLKSLSK 370
           G +I  ACGQL ++ +
Sbjct: 384 GSEIDGACGQLAAVGR 399


>gi|282854662|ref|ZP_06263997.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J139]
 gi|282582244|gb|EFB87626.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J139]
          Length = 376

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           I +  EE  +A+  +G+P      R  QI   ++ R   D    +D+ +  R  +   + 
Sbjct: 15  IDLSIEERVQAVKDLGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 70

Query: 70  IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
            +    V ++ SCD   T K L R       G   +E+V +   +      R TLC+SSQ
Sbjct: 71  PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARTTLCLSSQ 124

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   + RN++  EI+ QVL A  L         I    +P    ++ N
Sbjct: 125 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 175

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEP+ N+ +V  ++   +     G+  S R +TLST G VP I  + +E I V 
Sbjct: 176 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 235

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ L+P+NR++ ++ L+DA  HY   +   R++ EY ++K IND    
Sbjct: 236 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 294

Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           A  L + ++       A +NLIP NP PG  +  S   D   F E ++R      +R  R
Sbjct: 295 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPADQDAFVETLERWKIPVTVRDTR 354

Query: 355 GLDILAACGQLKSLSK 370
           G +I  ACGQL ++ +
Sbjct: 355 GSEIDGACGQLAAVGR 370


>gi|157273452|gb|ABV27351.1| radical SAM enzyme Cfr family protein [Candidatus
           Chloracidobacterium thermophilum]
          Length = 363

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 198/368 (53%), Gaps = 25/368 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + ++G   +++   + + G+P      R  Q+++ ++ + +   + +S + + VR  L  
Sbjct: 11  QDMLGQTCQQMCALMAERGLPA----YRGRQLFQALHRQLVETPEEISVLPRAVRTELAA 66

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             S+    +     S DGTR++L +     +     IETV+IP++ R TLC+SSQ GC +
Sbjct: 67  EASLQPLSLAGIFESLDGTRRYLFK-----VHDGYSIETVWIPDRGRVTLCLSSQAGCPM 121

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC T T  L RNLTA EI+ QVL                 +          N+V+MG
Sbjct: 122 RCAFCATATLGLQRNLTAGEIVAQVLYVLRDTVRQRQQPRPAAV----------NLVLMG 171

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHA 245
           MGEPL N+D+V  +L + +D  GL    RR+TLST G VP I  +G E     LA+SL A
Sbjct: 172 MGEPLLNYDHVLHALRVLADPEGLHIVPRRVTLSTVGIVPRIIALGREPDRPRLAVSLTA 231

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  L+P+N  YPLE L +AC  +P      RITFEYV+L G+NDS   A  L++ 
Sbjct: 232 ATDELRARLMPVNLTYPLEALREACLAFP-RHPGERITFEYVLLDGVNDSEDQARALLRW 290

Query: 306 LKGIPA----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  + A    K+NLIP NP PG  +     + ++ F   ++  G  + +R PRG DI AA
Sbjct: 291 LAPLRAQEAAKVNLIPHNPVPGIPFRPPKLERVLRFQALLRAKGLPTYLRRPRGQDISAA 350

Query: 362 CGQLKSLS 369
           CG L + S
Sbjct: 351 CGMLAATS 358


>gi|297624942|ref|YP_003706376.1| radical SAM domain-containing protein [Truepera radiovictrix DSM
           17093]
 gi|297166122|gb|ADI15833.1| radical SAM enzyme, Cfr family [Truepera radiovictrix DSM 17093]
          Length = 349

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 179/361 (49%), Gaps = 29/361 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +SL+ +  + L                R +Q+  W+Y RG   ++ M+++ +  R  L  
Sbjct: 5   QSLLELSPDALPA--------PDAQPYRRAQLAAWLYQRGALSWEAMTNLPRAWRAELGA 56

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            + +     ++  +S D + ++LL  P        + E VY+P + R TLCVSS VGC  
Sbjct: 57  RYRLSPFVRLERFVSADASVRYLLTLPD-----GKQTEAVYMPYRGRKTLCVSSMVGCPA 111

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG     RNL+  EIL Q+L+     G  P              R+I N+V+MG
Sbjct: 112 GCAFCATGALGFGRNLSRAEILGQLLVVAQAEGIAP--------------REIRNVVLMG 157

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245
           MGE L N+DN   ++       GL  S RRITLST G    I R+  E + ++LA+SLHA
Sbjct: 158 MGEALLNYDNALGAIRTMIHPEGLDMSPRRITLSTVGLPGRIRRLAAERLPLVLAVSLHA 217

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  ++P    + +E +I A   +   +  RR+T EY ML G+ND+   A  L+ +
Sbjct: 218 PDEKTRREIIPTAHAHAIEEIIAALHDWQA-AGGRRVTIEYTMLAGVNDALWQAEALVAL 276

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G+   +NLIPFNPW    +  S +  I  F   +  +G S  +R  RG D   ACGQL
Sbjct: 277 LRGLVVHVNLIPFNPWGASPFRSSSRAQIARFERVLTGAGLSVSVRFSRGRDTGGACGQL 336

Query: 366 K 366
            
Sbjct: 337 A 337


>gi|320101749|ref|YP_004177340.1| 23S rRNA m(2)A-2503 methyltransferase [Isosphaera pallida ATCC
           43644]
 gi|319749031|gb|ADV60791.1| 23S rRNA m(2)A-2503 methyltransferase [Isosphaera pallida ATCC
           43644]
          Length = 400

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 129/359 (35%), Positives = 191/359 (53%), Gaps = 26/359 (7%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
           G     L   L + G P      R+ Q+ +WI+ +  R F  M+D+   +R  L   +++
Sbjct: 36  GATLPGLTAWLAERGEPA----YRSDQVARWIFQKRARSFAVMTDLPAGLRLALESSWAV 91

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
               ++  + + DGT K LL            IETV + E+ R T+CVSSQVGC + C F
Sbjct: 92  YQTRVIRRQTATDGTDKLLLECRD-----GRRIETVLMREEDRRTVCVSSQVGCGMGCVF 146

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C +G + + RNLT  EI  ++L AR LL +                 +++NIV+MGMGE 
Sbjct: 147 CASGLKGVERNLTVGEITEELLHARDLLPEH---------------ERLTNIVVMGMGES 191

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSND 249
           L N +N+  +L       GL  S+R +T+ST G    I R+   +    LA+SLHA + +
Sbjct: 192 LANLENLIAALDRICSPSGLGLSQRAVTISTVGLPEKIKRLAALDRRYHLAVSLHAPTEE 251

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           LR+ LVPIN K  L  +++A  HY  ++  + +TFEYV+L GIND  RDA +L+ +L G 
Sbjct: 252 LRDQLVPINHKVGLRAVMEAADHYFAVTGRQ-VTFEYVLLGGINDRDRDARDLVALLAGR 310

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
            A +NLIP+NP  G  Y     +D+  F    ++ G S  +R  +G  I AACGQL+  
Sbjct: 311 KAHVNLIPYNPVAGLPYERPAPRDLDRFVRRCRQGGLSVSVRKTKGKRIDAACGQLRRR 369


>gi|306820530|ref|ZP_07454163.1| cfr family radical SAM enzyme [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551444|gb|EFM39402.1| cfr family radical SAM enzyme [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 360

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 109/362 (30%), Positives = 190/362 (52%), Gaps = 30/362 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           ++++    +E +  L++ G      + R  QI+  +Y +GI+ F  +++I + ++  + +
Sbjct: 18  KNILDYQFDEFQNILIENGFE----KYRAKQIYPLVY-KGIKTFDEINNIPKNLKDFMLE 72

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +F +    I ++  S  D T+K+L++     I     IE V +  K   + C+SSQVGC 
Sbjct: 73  NFVVNSVSIYEKLQSKKDYTKKYLMKLEDGNI-----IECVLMKYKFGLSACISSQVGCL 127

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +     VR+L++ E++ Q+L   + +G+                 KISNIV+M
Sbjct: 128 MGCTFCASTVGSKVRDLSSGEMIGQILAMSNDVGE-----------------KISNIVIM 170

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           G GEP  N+ N+ K   +      L+   R IT+ST G    I    + ++ + LAISLH
Sbjct: 171 GSGEPFDNYGNLLKFFDLVMSKDTLNIGARHITVSTCGLADKIIDFADRKLQINLAISLH 230

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
             + + R+ ++PI+RK+ ++ L+ A  +Y   +N  R+T+EY ++  +NDS  DA  L++
Sbjct: 231 NPNQEKRSQIMPISRKFKIDELMRAVEYYISKTNR-RVTYEYALINEVNDSEEDAKLLVQ 289

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           ++K     INLIP N      Y   D   I  F   + ++G ++ IR   G DI  ACGQ
Sbjct: 290 LVKNQLCHINLIPVNSTEHSNYKKPDNIRIQKFMNILSKNGINATIRREMGTDINGACGQ 349

Query: 365 LK 366
           L+
Sbjct: 350 LR 351


>gi|168015505|ref|XP_001760291.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688671|gb|EDQ75047.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 433

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 129/383 (33%), Positives = 198/383 (51%), Gaps = 27/383 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVRH 62
           +K SL  M   ELE  +   G        R + +W+ +Y  G  +     +  +++E   
Sbjct: 71  RKVSLKDMTFPELERWVESHGHKAS----RAAMLWRHLYGNGKWVESPAVIPRLNKEFVS 126

Query: 63  LLNQHFSIIY-PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSS 120
           LL +        ++ D   + DGTRK +             +ETV IP    R T+CVSS
Sbjct: 127 LLEERAEFAPNLQLRDVHTARDGTRKLVFFLEEY----GASVETVVIPGPRGRVTVCVSS 182

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q+GC++ C FC+T    L  NL+  +I+ Q+++A  ++    G               ++
Sbjct: 183 QIGCAMNCQFCFTAKMGLRGNLSTAQIVEQLVVASRIVSKDLG--------------HVT 228

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           N+V MGMGEPL N D+V ++  I  +  GL  S R++T+STSG VP I +        LA
Sbjct: 229 NVVFMGMGEPLHNIDSVIRAAEIMVNDKGLHLSPRKVTISTSGLVPQIRKFCRSSECALA 288

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRH-YPGLSNARRITFEYVMLKGINDSPRDA 299
           +SL+A ++D+R+ ++PINRKY +  L+D  +           +  EYVMLK +NDS  DA
Sbjct: 289 VSLNATTDDIRDQIMPINRKYNIRTLLDCVKEEMITHRPGESVFLEYVMLKNVNDSEEDA 348

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             LI+++K IP KINLI FN  PG  +  +   +++ F + +  +G    IR  RG D  
Sbjct: 349 TRLIELVKDIPCKINLIMFNSHPGSAFEPTPLVEVLRFRDRVADAGLVVHIRNSRGDDEK 408

Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382
            ACGQL ++  R P+  +QEMQ 
Sbjct: 409 MACGQLGTVLPRSPRRRKQEMQE 431


>gi|114775703|ref|ZP_01451271.1| hypothetical protein SPV1_05223 [Mariprofundus ferrooxydans PV-1]
 gi|114553814|gb|EAU56195.1| hypothetical protein SPV1_05223 [Mariprofundus ferrooxydans PV-1]
          Length = 364

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 143/376 (38%), Positives = 207/376 (55%), Gaps = 21/376 (5%)

Query: 1   MNFLKKES------LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMS 54
           M   +K +      L  +   +L+  +     P    + R  Q+  W   +GI +   M 
Sbjct: 1   MTQTRKTATADLAQLSALNLSDLQGLMEAWMQP----KFRAKQVLDWC-NKGILNPALMK 55

Query: 55  DISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG 114
           +I   +R  L          ++  + S DGTRK++       + G + IE V+IPE+ RG
Sbjct: 56  NIPDALRDRLLTSLMCEPLRLIRRECSTDGTRKYVFALNRPRLAGKM-IEAVFIPEEKRG 114

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           T+C+SSQVGC L C FC+TGTQ    NL+A EI+ QVL  ++ L   P  +D+       
Sbjct: 115 TVCISSQVGCVLDCPFCHTGTQGFEGNLSAGEIVAQVLAIKADLRHEPMTDDLHND---- 170

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
               +++IV MGMGEPL N + V  SL+I  D  GL  S+RRIT+STSG  P I R+G  
Sbjct: 171 ----VTHIVYMGMGEPLANEEGVHGSLAILMDEDGLKLSRRRITVSTSGLTPQIERLGAV 226

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             V LAISLH+  ++ R++LVPINRK+PL  L +    YP L+  R IT EYV+L G+ND
Sbjct: 227 HPVNLAISLHSAIDEKRDLLVPINRKHPLAQLRECLDAYP-LATQRHITLEYVLLDGVND 285

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
              D   L + +      +NLI FNP+PG  Y  + ++ +  F++ +   G  + +R  R
Sbjct: 286 QAEDLAALARFVNPEREWVNLIQFNPYPGTSYRGTAKESMNQFAQHLISKGIRATVRRSR 345

Query: 355 GLDILAACGQLKSLSK 370
           G DI+AACGQLK+ +K
Sbjct: 346 GQDIMAACGQLKADTK 361


>gi|283457572|ref|YP_003362155.1| putative Fe-S-cluster redox enzyme [Rothia mucilaginosa DY-18]
 gi|283133570|dbj|BAI64335.1| predicted Fe-S-cluster redox enzyme [Rothia mucilaginosa DY-18]
          Length = 419

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 183/371 (49%), Gaps = 19/371 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + +         E L ++G        R SQ+ K  + R + D   M+D+  + R  +  
Sbjct: 59  KHIADFDMAGRREFLKELGY----QSFRASQLSKHYFERLVTDPAEMTDLPAKDREQMVA 114

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                    V   +  DG  T K + R     +     IE+V +   +R T+C+SSQ GC
Sbjct: 115 QAMPQLLTPV-RTLEADGGDTLKVVHRLFDGAL-----IESVIMRYDNRVTMCISSQAGC 168

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG Q L RNL+  EI+ QV+     L    G E+ EG    +   ++SNIV 
Sbjct: 169 GMNCPFCATGQQGLTRNLSTAEIVEQVVAGARYLKQMKGLEEAEGGSEDTRPLRVSNIVF 228

Query: 185 MGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241
           MGMGE L N+     ++    D    GL  S R +T+ST G VP I +   E++ + LA+
Sbjct: 229 MGMGEALANYKATMGAVHRLIDPSPEGLGISARGLTMSTVGLVPGIRKFELEKLPITLAL 288

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ L+PIN+++ ++  +DA   Y   +  RR++ EY +++ IND    A  
Sbjct: 289 SLHAPDDELRDELIPINQRWKVDETLDAAYDYY-RTTGRRVSIEYALIRDINDQGWRADL 347

Query: 302 LIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L K L  +G     +N IP NP PG ++  S +     F E ++  G  + IR  RG DI
Sbjct: 348 LGKKLAQRGRGWVHVNPIPLNPTPGSKWTASRKGVEQNFVERLRAHGIPTTIRDTRGSDI 407

Query: 359 LAACGQLKSLS 369
             ACGQL +  
Sbjct: 408 DGACGQLAAKE 418


>gi|315081237|gb|EFT53213.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL078PA1]
          Length = 405

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           I +  EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  +   + 
Sbjct: 44  IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99

Query: 70  IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
            +    V ++ SCD   T K L R       G   +E+V +   +      R TLC+SSQ
Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   + RN++  EI+ QVL A  L         I    +P    ++ N
Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEP+ N+ +V  ++   +     G+  S R +TLST G VP I  + +E I V 
Sbjct: 205 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 264

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ L+P+NR++ ++ L+DA  HY   +   R++ EY ++K IND    
Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAASHYAEKTKR-RVSIEYALMKDINDQADR 323

Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           A  L + ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  R
Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 383

Query: 355 GLDILAACGQLKSLSK 370
           G +I  ACGQL ++ +
Sbjct: 384 GSEIDGACGQLAAVGR 399


>gi|227484655|ref|ZP_03914971.1| Fe-S-cluster redox enzyme [Anaerococcus lactolyticus ATCC 51172]
 gi|227237375|gb|EEI87390.1| Fe-S-cluster redox enzyme [Anaerococcus lactolyticus ATCC 51172]
          Length = 340

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 197/367 (53%), Gaps = 30/367 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            ++      E+E    +    + + + R  Q+++ I+V  + DF  M+D+  ++R  L  
Sbjct: 2   ININDKTIYEIENLFKE----RSYQKFRAKQVFRAIHVNRLNDFDEMTDLPLKMREDLKA 57

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F     +++    S  D T+K+LL  P + I     +E VY+  K R T+C+SSQVGC 
Sbjct: 58  DFKFERIKVLKTFESKIDSTKKYLLELPDKNI-----VEAVYMDYKDRSTICISSQVGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC +    LVRN+TA E++ +V L   L G                   ISNIV+M
Sbjct: 113 MGCSFCASTKNGLVRNMTASELIEEVYLLERLNG------------------PISNIVIM 154

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEPL NFD++KK + I +D  G + S R ITLSTSG  P I  + +  + V LA+SLH
Sbjct: 155 GIGEPLDNFDHIKKFIEIITDPSGRNLSHRSITLSTSGLSPRIKDLADTGLDVNLALSLH 214

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
              +  R + +P+ +KY ++ LIDA  +Y   +   R++FEYV++ G+N+   D  NL  
Sbjct: 215 YADDKKRAVYMPVAKKYSIKDLIDATDYYFDKTGR-RVSFEYVVIDGVNNLTEDVENLRD 273

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L G    INLIP NP     +     + +  F + + + G ++ IR   G+DI A+CGQ
Sbjct: 274 LLFGKNVHINLIPLNPIEEFNHKKPGARVLEDFKQRLIKRGLNATIRRSMGIDIDASCGQ 333

Query: 365 LKSLSKR 371
           L++   R
Sbjct: 334 LRNNYAR 340


>gi|288818052|ref|YP_003432399.1| radical SAM enzyme, Cfr family [Hydrogenobacter thermophilus TK-6]
 gi|288787451|dbj|BAI69198.1| radical SAM enzyme, Cfr family [Hydrogenobacter thermophilus TK-6]
 gi|308751653|gb|ADO45136.1| radical SAM enzyme, Cfr family [Hydrogenobacter thermophilus TK-6]
          Length = 360

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 207/365 (56%), Gaps = 32/365 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           ++    EEL+E+L K+G+P    + R  Q+  W+Y +   DF  M+DIS+E R LL +++
Sbjct: 4   ILRYNLEELKESLSKMGMP----KYRAVQVLGWVYKKFQTDFDAMTDISKEDRKLLKENY 59

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            +   E+ DE  + D + K+L +           IE+V I E+   TLCVSSQ+GC++ C
Sbjct: 60  RVHTLELTDEVHAED-SVKYLFKTLD-----GHTIESVLIRERDHLTLCVSSQIGCAVGC 113

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC T    L RNL  +EI+ Q+L  +  +                + ++I N+V MGMG
Sbjct: 114 KFCATAIDGLTRNLRTDEIIDQLLQIQKKI----------------LPQRIRNVVFMGMG 157

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHA 245
           EPL N++NV+K++ +     G+  SKRRI++STSG +  I R+ E+     V LA+SL+A
Sbjct: 158 EPLANYENVRKAVEVMVSPWGIDLSKRRISVSTSGLIAQIKRMSEDPIMREVNLAVSLNA 217

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            S  LR +++PI++   L  L+   + YP      RI  EYV++KG+ND   DAL+L ++
Sbjct: 218 PSQKLRELIMPISKTNNLSELMQVLKEYPYPKGR-RIMLEYVLIKGLNDKKEDALSLAQL 276

Query: 306 LKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +       K+NLIP+NP P   Y     +++  F + + ++G S+ +R  +G++I  ACG
Sbjct: 277 IGKYKNKFKVNLIPYNPDPELPYERPSIEEVYEFQKVLWQTGISTFVRLSKGINIFGACG 336

Query: 364 QLKSL 368
           QL+  
Sbjct: 337 QLRQR 341


>gi|255326866|ref|ZP_05367942.1| radical SAM enzyme, Cfr family [Rothia mucilaginosa ATCC 25296]
 gi|255296083|gb|EET75424.1| radical SAM enzyme, Cfr family [Rothia mucilaginosa ATCC 25296]
          Length = 404

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 183/371 (49%), Gaps = 19/371 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + +         E L ++G        R SQ+ K  + R + D   M+D+  + R  +  
Sbjct: 44  KHIADFDMAGRREFLKELGY----QSFRASQLSKHYFERLVTDPAEMTDLPAKDREQMVA 99

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                    V   +  DG  T K + R     +     IE+V +   +R T+C+SSQ GC
Sbjct: 100 QAMPQLLTPV-RTLEADGGDTLKVVHRLFDGAL-----IESVIMRYDNRVTMCISSQAGC 153

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG Q L RNL+  EI+ QV+     L    G E+ EG    +   ++SNIV 
Sbjct: 154 GMNCPFCATGQQGLTRNLSTAEIVEQVVAGARYLKQMKGLEEAEGGSEDTRPLRVSNIVF 213

Query: 185 MGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241
           MGMGE L N+     ++    D    GL  S R +T+ST G VP I +   E++ + LA+
Sbjct: 214 MGMGEALANYKATMGAVHRLIDPSPEGLGISARGLTMSTVGLVPGIRKFELEKLPITLAL 273

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ L+PIN+++ ++  +DA   Y   +  RR++ EY +++ IND    A  
Sbjct: 274 SLHAPDDELRDELIPINQRWKVDETLDAAYDYY-RTTGRRVSIEYALIRDINDQGWRADL 332

Query: 302 LIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L K L  +G     +N IP NP PG ++  S +     F E ++  G  + IR  RG DI
Sbjct: 333 LGKKLAQRGRGWVHVNPIPLNPTPGSKWTASRKGVEQNFVERLRAHGIPTTIRDTRGSDI 392

Query: 359 LAACGQLKSLS 369
             ACGQL +  
Sbjct: 393 DGACGQLAAKE 403


>gi|315445031|ref|YP_004077910.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. Spyr1]
 gi|315263334|gb|ADU00076.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. Spyr1]
          Length = 365

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 181/374 (48%), Gaps = 30/374 (8%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             L       +   E   A+  +G+P      R  Q+    + R I D   M+D+   VR
Sbjct: 14  RALPPRHFADLADTERAAAVADLGLPA----FRGKQLANQYFGRLISDPSQMTDLPAGVR 69

Query: 62  HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             +         E   E     G TRK L R   +        E+V +    R T+C+SS
Sbjct: 70  DQVAAALFPALLETAREIECDRGETRKVLWRAVDKTT-----FESVLMRYPDRNTVCISS 124

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG   L RNL+  EIL QV  A + L D  G              ++S
Sbjct: 125 QAGCGMACPFCATGQGGLKRNLSTAEILEQVRFASAELRDRDGG-------------RLS 171

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           NIV MGMGEPL N++ V  ++   +     G   S R +T+ST G  P I ++ +E + V
Sbjct: 172 NIVFMGMGEPLANYNRVVAAVRRITASSPHGFGISARSVTVSTVGLAPAIRKLADEKLNV 231

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLH   ++LR+ LVP+N ++ ++ ++DA R+Y  L+   R++ EY +++ +ND P 
Sbjct: 232 TLAVSLHTPDDELRDTLVPVNNRWKVDEVLDAARYYADLTGR-RVSIEYALIRDVNDQPW 290

Query: 298 DALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            A  L + L    G    +NLIP NP PG E+  S +     F   ++  G S  +R  R
Sbjct: 291 RADLLGRKLHAKLGPLVHVNLIPLNPTPGSEWDASPKPVEREFVRRVRAKGVSCTVRDTR 350

Query: 355 GLDILAACGQLKSL 368
           G +I AACGQL + 
Sbjct: 351 GREIAAACGQLAAQ 364


>gi|269977915|ref|ZP_06184869.1| radical SAM enzyme, Cfr family [Mobiluncus mulieris 28-1]
 gi|269933881|gb|EEZ90461.1| radical SAM enzyme, Cfr family [Mobiluncus mulieris 28-1]
          Length = 401

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 127/375 (33%), Positives = 182/375 (48%), Gaps = 25/375 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
                +      E   ++G+       R  QI +  + R   D Q M+D++   R L  Q
Sbjct: 31  IHFADLEPAVRRETAAELGLKA----FRADQIARHYFGRFEADPQLMTDLNARDRELAAQ 86

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
               +   +V +    D T+K L R          E+E+V +    R TLCVSSQVGC +
Sbjct: 87  LLPQLITPVVTKTADQDWTQKTLWRLFD-----GAEVESVLMRYPKRVTLCVSSQVGCGM 141

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L RNL+A EIL QV  +                 +     ++SNIV MG
Sbjct: 142 GCPFCATGQLGLARNLSAGEILEQVRFSAR---------AAATGALGGQETRLSNIVFMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGEPL N+  +  SL   +     G   S R + +ST G VP I R+  E I V LA+SL
Sbjct: 193 MGEPLSNYRALLTSLRTITAPVPQGFGISARNLVVSTVGMVPGIRRLASEGIPVTLAVSL 252

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  ++LR+ L+P+NR Y +  L+DA   Y  ++   R++ EY +++ +ND P  A  L 
Sbjct: 253 HAPDDELRDALIPMNRHYKVGQLLDAAHEYFEITGR-RVSIEYALIRDMNDHPWRAQLLA 311

Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
             L       A +N IP NP PG  +  S  + +  F+  +++SG S+ +R  RG DI  
Sbjct: 312 DELNKRGKTWAHVNPIPLNPTPGSIWTASLPRVMEEFTSILRQSGISTTLRDTRGSDIDG 371

Query: 361 ACGQLKSLSKRIPKV 375
           ACGQL + SK   K 
Sbjct: 372 ACGQLATASKNHKKT 386


>gi|304389793|ref|ZP_07371752.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304326969|gb|EFL94208.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 390

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 120/375 (32%), Positives = 185/375 (49%), Gaps = 26/375 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +       ++  EA++  G+       R  Q+ +  + R   D   M+D++   R     
Sbjct: 36  QHFADFDPQQRREAVVAAGMRP----FRADQVARHYFGRFEADPAQMTDLAPADRERARD 91

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
               +   +V +      TRK L R          ++E+V +    R TLCVSSQVGC +
Sbjct: 92  LLPELITPVVTQVADKGWTRKTLWRLFD-----GAQVESVLMRYPKRVTLCVSSQVGCGM 146

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L RNL+A EIL QV LA     D                 ++SN+V MG
Sbjct: 147 GCPFCATGQLGLTRNLSAAEILEQVRLAARAAQD----------GELGSPARLSNLVFMG 196

Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGEPL N+ ++  ++   +     G   S R + +ST G VP I ++ +E + V LA+SL
Sbjct: 197 MGEPLANYKSLLHTIRTLTAEVPQGFGISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSL 256

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  ++LRN L+P+NR+Y ++ L+D    Y   +   R++ EY +++ +ND P  A  L 
Sbjct: 257 HAPDDELRNELIPMNRRYQVDELLDTAYAYFQATGR-RVSIEYALIRDMNDHPWRAQLLA 315

Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
             L       A +N IP NP PG  +  S  + +  F E ++++G S+ +R  RG DI  
Sbjct: 316 DKLNERGKTWAHVNPIPLNPTPGSIWDASLPRVMDEFMEILRQAGISTTLRDTRGSDIDG 375

Query: 361 ACGQLKSLSKRIPKV 375
           ACGQL + +K+ P  
Sbjct: 376 ACGQLAAKAKQSPAA 390


>gi|227875938|ref|ZP_03994061.1| possible Fe-S-cluster redox protein [Mobiluncus mulieris ATCC
           35243]
 gi|307700221|ref|ZP_07637262.1| 23S rRNA m2A2503 methyltransferase [Mobiluncus mulieris FB024-16]
 gi|227843470|gb|EEJ53656.1| possible Fe-S-cluster redox protein [Mobiluncus mulieris ATCC
           35243]
 gi|307614603|gb|EFN93831.1| 23S rRNA m2A2503 methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 401

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 182/375 (48%), Gaps = 25/375 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
                +      E   ++G+       R  QI +  + R   D Q M+D++   R L  Q
Sbjct: 31  IHFADLEPAVRRETAAELGLKA----FRADQIARHYFGRFEADPQLMTDLNARDRELAAQ 86

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
               +   +V +    D T+K L R          E+E+V +    R TLCVSSQVGC +
Sbjct: 87  LLPQLITPVVTKTADQDWTQKTLWRLFD-----GAEVESVLMRYPKRVTLCVSSQVGCGM 141

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L RNL+A EIL QV  +                 +     ++SNIV MG
Sbjct: 142 GCPFCATGQLGLARNLSAGEILEQVRFSAR---------AAATGALGGQETRLSNIVFMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGEPL N+  +  SL   +     G   S R + +ST G VP I R+  E I V LA+SL
Sbjct: 193 MGEPLSNYRALLTSLRTITAPVPQGFGISARNLVVSTVGMVPGIRRLASEGIPVTLAVSL 252

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  ++LR+ L+P+NR Y +  L+DA   Y   +  RR++ EY +++ +ND P  A  L 
Sbjct: 253 HAPDDELRDALIPMNRHYKVGQLLDAAHEYFE-TTGRRVSIEYALIRDMNDHPWRAQLLA 311

Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
             L       A +N IP NP PG  +  S  + +  F+  +++SG S+ +R  RG DI  
Sbjct: 312 DELNKRGKTWAHVNPIPLNPTPGSIWTASLPRVMEEFTSILRQSGISTTLRDTRGSDIDG 371

Query: 361 ACGQLKSLSKRIPKV 375
           ACGQL + SK   K 
Sbjct: 372 ACGQLATASKNHKKT 386


>gi|256544909|ref|ZP_05472280.1| Cfr family radical SAM enzyme [Anaerococcus vaginalis ATCC 51170]
 gi|256399408|gb|EEU13014.1| Cfr family radical SAM enzyme [Anaerococcus vaginalis ATCC 51170]
          Length = 343

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 194/371 (52%), Gaps = 30/371 (8%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            + K+++     +ELEE    +G      + R  Q+++ I+V  I DF  M+D+S+++R 
Sbjct: 1   MIMKQTINDKTIKELEEIFKNLGF----QKFRAKQVFRQIHVNKINDFSKMTDLSKDMRK 56

Query: 63  LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            L+Q       +I+ E  S  D T+K+L       I     IE V++   +R T+C+SSQ
Sbjct: 57  KLDQILYFPKIKILKEFKSNLDKTKKYLFELDDGNI-----IEAVFMEYDNRNTICISSQ 111

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C+FC +    L R+L A EI+ ++ L      D                  I+N
Sbjct: 112 VGCKMGCNFCASTKNGLERSLLASEIIEEIYLLERENSD------------------INN 153

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
           IV+MG+GEPL NF N++K + I +D  G + S R IT+ST G V  I ++ +    + LA
Sbjct: 154 IVVMGIGEPLDNFSNIEKFIKIITDDNGRNLSHRAITISTVGLVDKIYKLADLGYDINLA 213

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLH   +  R   +P  +KY ++ ++ AC +Y   +   RI++EYV++ G+N+   D  
Sbjct: 214 VSLHYAFDKKRMEYMPSAKKYKIKDIVKACDYYFEKTKR-RISYEYVVIDGVNNLKEDID 272

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L K+ KG    INLIP NP    +Y  +    +  F + +   G ++ IR   G DI A
Sbjct: 273 KLEKLFKGKNIHINLIPLNPIEEFKYSKTKSNVMDQFQKKLSTRGLNATIRRSMGSDIDA 332

Query: 361 ACGQLKSLSKR 371
           +CGQL++   R
Sbjct: 333 SCGQLRNNYAR 343


>gi|227495074|ref|ZP_03925390.1| possible Fe-S-cluster redox protein [Actinomyces coleocanis DSM
           15436]
 gi|226831526|gb|EEH63909.1| possible Fe-S-cluster redox protein [Actinomyces coleocanis DSM
           15436]
          Length = 403

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 179/377 (47%), Gaps = 28/377 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L  +     ++ L   G+P      R  Q+ +  +   + D   MSD+ + +   +   
Sbjct: 47  HLADLDLSGRKQVLKDAGLPA----FRADQLSRHYFGNYVADPAQMSDLPKNMVDQVRDS 102

Query: 68  FSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                 + V   +  DG  T K L             +E+V +    R TLC+SSQ GC 
Sbjct: 103 LMPTLVKPV-RTLEADGGLTIKHLWELFD-----GSRVESVLMRYPQRTTLCISSQAGCG 156

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EI+ QV LA     D           +     ++SNIV M
Sbjct: 157 MACPFCATGQMGLTRNLSTAEIVEQVRLAAKACEDGD---------LEGGPTRLSNIVFM 207

Query: 186 GMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242
           GMGEPL N+  + ++L         G   S R IT+ST G VP I ++ +    V LAIS
Sbjct: 208 GMGEPLANYKAIVETLDRLIKESPEGFGLSARNITVSTVGLVPAIDKLAKLGHPVTLAIS 267

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ L+PIN ++ +  L+DA R Y  ++  RR++ EY +++ +ND    A  L
Sbjct: 268 LHAPDDELRDELIPINSRWKVGELLDAARRYF-VATGRRVSIEYALIRDMNDHAWRAQLL 326

Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
              L       A +N IP NP PG  +  S +K    F E ++++G S+ IR  RG DI 
Sbjct: 327 ADELNKRGHGWAHVNPIPLNPTPGSIWTASTKKAQQEFVEILRKNGISTTIRDTRGSDID 386

Query: 360 AACGQLKSLSKRIPKVP 376
            ACGQL +   +  +  
Sbjct: 387 GACGQLATTVAKEEEAK 403


>gi|169831742|ref|YP_001717724.1| radical SAM protein [Candidatus Desulforudis audaxviator MP104C]
 gi|205829744|sp|B1I501|RLMN_DESAP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|169638586|gb|ACA60092.1| radical SAM enzyme, Cfr family [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 318

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 123/335 (36%), Positives = 181/335 (54%), Gaps = 25/335 (7%)

Query: 38  IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARC 96
           + +W++ +G      M+++    R  L     +   E++D ++S  G T K+LL      
Sbjct: 1   MAEWVFKQGALSLAEMTNLPAGFRKRLAGEAVVGRLEVLDSRVSAAGDTVKYLL-----G 55

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
           +     +ETV +      T+CVSSQVGC + C FC +     +RNL + E+  QVL  R 
Sbjct: 56  LDDGHAVETVLMRHDYGRTVCVSSQVGCRMACRFCASALGGWIRNLRSGELYEQVLAVRR 115

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
             G+                  ++++V+MGMGEPL N++N  K ++  +   GL  S+RR
Sbjct: 116 ASGE-----------------PVTHVVLMGMGEPLDNYENTLKFVANVTAPYGLRLSQRR 158

Query: 217 ITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
           ITLST G VP I ++  E + + LAISLHA +N LR+ LVP+NRKYPLE LI AC  Y  
Sbjct: 159 ITLSTCGLVPEIQKLARERLALTLAISLHAPNNALRDTLVPVNRKYPLEQLIPACAEYAR 218

Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIV 335
            +   R++FEY++L G+NDSP  A  L  +L G+   +NLIP NP P   Y     + + 
Sbjct: 219 RTGR-RVSFEYILLGGVNDSPELARELSDLLTGLLGHVNLIPANPVPESGYRAPSPEAVR 277

Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           TF   ++  G    +R   G DI AACGQL+   +
Sbjct: 278 TFRRVLEEGGVPVSLRRELGADIGAACGQLRRRHR 312


>gi|229820988|ref|YP_002882514.1| radical SAM enzyme, Cfr family [Beutenbergia cavernae DSM 12333]
 gi|229566901|gb|ACQ80752.1| radical SAM enzyme, Cfr family [Beutenbergia cavernae DSM 12333]
          Length = 383

 Score =  361 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 182/371 (49%), Gaps = 32/371 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E  +A+  +G        R  Q+ +  +    RD   MSD+    R  L  
Sbjct: 33  VHLADLAPAERVDAVRGVG----EAAFRADQLSRHYFTHLTRDADAMSDLPAASREDL-- 86

Query: 67  HFSIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
             + + P++V     +  DG  T K L            ++E+V +  + R TLCVSSQ 
Sbjct: 87  -VAALLPQLVSPVRTMEADGGATVKTLWALFDDA-----KVESVLMRYRDRTTLCVSSQA 140

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV LA +               +P    ++SN+
Sbjct: 141 GCGMACPFCATGQLGLTRNLSTAEIVEQVRLAAAACR---------AGDLPGGPTRLSNV 191

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  V  ++    +    GL  S R +T+ST G VP I ++  E I V L
Sbjct: 192 VFMGMGEPLANYRAVIGAVRRMVEPAPSGLGMSARNVTVSTVGLVPAIDKLAAEGIPVTL 251

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ LVPIN ++ +   +DA R Y  +++  R++ EY +++ +ND    A
Sbjct: 252 AVSLHAPDDELRSELVPINTRWSVGEALDAARRYFDITHR-RVSIEYALIRDVNDHGWRA 310

Query: 300 LNLIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L K L  +G     +N IP NP PG  +  SD      F   ++ +G  + IR  RG 
Sbjct: 311 DLLAKELVARGRGWVHVNPIPLNPTPGSRWTASDPGVEAEFVARLRHAGIPTTIRDTRGS 370

Query: 357 DILAACGQLKS 367
           DI  ACGQL +
Sbjct: 371 DIDGACGQLAA 381


>gi|298377278|ref|ZP_06987231.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_19]
 gi|298265692|gb|EFI07352.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_19]
          Length = 334

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 127/358 (35%), Positives = 176/358 (49%), Gaps = 29/358 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  EEL+    ++ +P         Q+  WIY + I     M++I+   R LL   F I 
Sbjct: 1   MTLEELKGVASEVSLPA----YAAKQMADWIYKKKITRISEMTNIAVAKRALLEDSFEIG 56

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
                + + S DGT K+L        G    +E+VYIP   R TLCVSSQVGC + C FC
Sbjct: 57  VYPPSEYQKSKDGTIKYLY-----AAGPGRFVESVYIPTDDRATLCVSSQVGCKMNCLFC 111

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TG Q    NLTA +IL Q+                           ++NIV MGMGEPL
Sbjct: 112 MTGKQGFTANLTANQILNQI-------------------QSLPENDSLTNIVFMGMGEPL 152

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251
            N D + K L I +   G ++S +RIT+ST G    + R  EE    LA+SLH+     R
Sbjct: 153 DNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVSLHSPYPMER 212

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             L+P+ + +P   +ID  + Y   S+ RR++FEY++ K +NDS + A  L  +L GIP 
Sbjct: 213 LSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEALSCLLGGIPC 271

Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           ++NLI F+  P      SD   +  F + +   G    IR  RG DI AACG L +  
Sbjct: 272 RVNLIRFHAIPNVSLETSDIAKMEAFRDFLNAKGVVCTIRASRGEDIFAACGMLSTAK 329


>gi|298346468|ref|YP_003719155.1| putative Fe-S-cluster redox protein [Mobiluncus curtisii ATCC
           43063]
 gi|298236529|gb|ADI67661.1| possible Fe-S-cluster redox protein [Mobiluncus curtisii ATCC
           43063]
          Length = 390

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/375 (32%), Positives = 184/375 (49%), Gaps = 26/375 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +       ++  EA++  G+       R  Q+ +  + R   D   M+D+    R     
Sbjct: 36  QHFADFDPQQRREAVVAAGMRP----FRADQVARHYFGRFEADPAQMTDLGPADRERARD 91

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
               +   +V +      TRK L R          ++E+V +    R TLCVSSQVGC +
Sbjct: 92  LLPELITPVVTQVADKGWTRKTLWRLFD-----GAQVESVLMRYPKRVTLCVSSQVGCGM 146

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L RNL+A EIL QV LA     D                 ++SN+V MG
Sbjct: 147 GCPFCATGQLGLTRNLSAAEILEQVRLAAKAAQD----------GELGSPSRLSNLVFMG 196

Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGEPL N+ ++  ++   +     G   S R + +ST G VP I ++ +E + V LA+SL
Sbjct: 197 MGEPLANYKSLLHTIRTLTAEVPQGFGISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSL 256

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  ++LRN L+P+NR+Y ++ L+D    Y   +   R++ EY +++ +ND P  A  L 
Sbjct: 257 HAPDDELRNELIPMNRRYQVDELLDTAYAYFQATGR-RVSIEYALIRDMNDHPWRAQLLA 315

Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
             L       A +N IP NP PG  +  S  + +  F E ++++G S+ +R  RG DI  
Sbjct: 316 DKLNERGKTWAHVNPIPLNPTPGSIWDASLPRVMDEFMEILRQAGISTTLRDTRGSDIDG 375

Query: 361 ACGQLKSLSKRIPKV 375
           ACGQL + +K+ P  
Sbjct: 376 ACGQLAAKAKQSPAA 390


>gi|315657100|ref|ZP_07909984.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492203|gb|EFU81810.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 390

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/375 (32%), Positives = 184/375 (49%), Gaps = 26/375 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +       ++  EA++  G+       R  Q+ +  + R   D   M+D+    R     
Sbjct: 36  QHFADFDPQQRREAVVAAGMRP----FRADQVARHYFGRFEADPAQMTDLGPADRERARD 91

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
               +   +V +      TRK L R          ++E+V +    R TLCVSSQVGC +
Sbjct: 92  LLPELITPVVTQVADKGWTRKTLWRLFD-----GAQVESVLMRYPKRVTLCVSSQVGCGM 146

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L RNL+A EIL QV LA     D                 ++SN+V MG
Sbjct: 147 GCPFCATGQLGLTRNLSAAEILEQVRLAARAAQD----------GELGSPARLSNLVFMG 196

Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGEPL N+ ++  ++   +     G   S R + +ST G VP I ++ +E + V LA+SL
Sbjct: 197 MGEPLANYKSLLHTIRTLTAEVPQGFGISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSL 256

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  ++LRN L+P+NR+Y ++ L+D    Y   +   R++ EY +++ +ND P  A  L 
Sbjct: 257 HAPDDELRNELIPMNRRYQVDELLDTAYAYFQATGR-RVSIEYALIRDMNDHPWRAQLLA 315

Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
             L       A +N IP NP PG  +  S  + +  F E ++++G S+ +R  RG DI  
Sbjct: 316 DKLNERGKTWAHVNPIPLNPTPGSIWDASLPRVMDEFMEILRQAGISTTLRDTRGSDIDG 375

Query: 361 ACGQLKSLSKRIPKV 375
           ACGQL + +K+ P  
Sbjct: 376 ACGQLAAKAKQSPAA 390


>gi|297626635|ref|YP_003688398.1| hypothetical protein PFREUD_14730 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922400|emb|CBL56972.1| Hypothetical protein PFREUD_14730 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 375

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 178/369 (48%), Gaps = 27/369 (7%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           + +  +E  EA+  +G+P      R  QI    + R   D +  +D+   VR  +     
Sbjct: 24  MDLGVDERIEAVRALGLPA----FRAKQISTHWFSRCEHDPRQWTDLPAAVRDEVADKLF 79

Query: 70  IIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
                 V    +  G T K   +     +     +E+V +    R T+C+SS+ GC++ C
Sbjct: 80  PQLLTPVQALSADHGRTVKVAWQLHDGSL-----VESVLMRYPHRTTICISSEAGCAMNC 134

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG   L RNL+  EI+ QVL          G   +    IP    +I+N+V MGMG
Sbjct: 135 PFCATGQGGLQRNLSTAEIVGQVL---------DGARRLANGEIPGGPGRINNVVFMGMG 185

Query: 189 EPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           EP+ NF  V  ++   +  +  GL  S R +T+ST G VP I  + +  I   LAISLHA
Sbjct: 186 EPMANFKAVLGAVREITRPEPDGLGISARGVTVSTIGMVPRINELSDTGIPATLAISLHA 245

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             ++LR+ LVP+N+ + ++ ++DA   Y   +   R++ EY ++K IND    A  L + 
Sbjct: 246 PDDELRDELVPLNKHFNIDAVLDAAWAYAENTKR-RVSIEYALIKDINDQSWRADLLARR 304

Query: 306 LKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           LK         +NLIP NP PG ++  S ++D   F   ++       +R  RG +I  A
Sbjct: 305 LKERGDWGWCHVNLIPLNPTPGSKWTASRREDEEAFVRHLENHHVPVTVRDTRGREIDGA 364

Query: 362 CGQLKSLSK 370
           CGQL +  K
Sbjct: 365 CGQLAAAVK 373


>gi|18405124|ref|NP_565909.1| radical SAM domain-containing protein [Arabidopsis thaliana]
 gi|15809964|gb|AAL06909.1| At2g39670/F17A14.4 [Arabidopsis thaliana]
 gi|17065474|gb|AAL32891.1| Unknown protein [Arabidopsis thaliana]
 gi|20197047|gb|AAB97122.2| expressed protein [Arabidopsis thaliana]
 gi|23197704|gb|AAN15379.1| Unknown protein [Arabidopsis thaliana]
 gi|330254610|gb|AEC09704.1| radical SAM domain-containing protein [Arabidopsis thaliana]
          Length = 428

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 124/385 (32%), Positives = 187/385 (48%), Gaps = 39/385 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
           LIGM   EL+E  + +G        R  Q+   IY R +   +  S++    R  L    
Sbjct: 64  LIGMSEPELQELAINLG----QEGYRGKQLHHLIYKRKVNKVEDFSNLPLTFRKGLVDGG 119

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
           F +    I     + DGT K         +   + IETV IP +       R T CVSSQ
Sbjct: 120 FKVGRSPIYQTVTATDGTIK-----LLLKLEDNLLIETVGIPVQDDEKGITRLTACVSSQ 174

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC L CSFC TG     RNL   EI+ QVL    +                    +++N
Sbjct: 175 VGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKH-----------------RVTN 217

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
           +V MGMGEP+ N  +V  +    +    +   +R IT+ST G    I ++   ++   LA
Sbjct: 218 VVFMGMGEPMLNLKSVLDAHRCLNKD--IEIGQRMITISTVGVPNTIKKLASHKLQSTLA 275

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +  LR  +VP  + YPLE ++  CR Y   +N  R++FEY +L G+ND    A+
Sbjct: 276 VSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETNR-RVSFEYALLAGVNDQVEHAV 334

Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
            L ++L+  G    +NLIP+NP  G EY    +K ++ F+  ++    ++ +R  RGLD 
Sbjct: 335 ELAELLREWGKTYHVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGLDA 394

Query: 359 LAACGQLKSLSKRIPKVPRQEMQIT 383
            AACGQL++  ++ P +   + Q +
Sbjct: 395 SAACGQLRNKFQKSPLLTETDSQES 419


>gi|32266677|ref|NP_860709.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           hepaticus ATCC 51449]
 gi|81665730|sp|Q7VGY9|RLMN_HELHP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|32262728|gb|AAP77775.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 369

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 136/387 (35%), Positives = 208/387 (53%), Gaps = 45/387 (11%)

Query: 1   MNF---LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDIS 57
           MN     ++ SL G    EL+  L            R  QI+ W+Y R   D   M +IS
Sbjct: 1   MNIDFPFQQPSLYGYKLNELKSIL--------SPAFRAKQIYHWLYHRYENDAMRMDNIS 52

Query: 58  QEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR---- 113
           + +++ + +HF++     +  + S DG++K+L              E+V I  + +    
Sbjct: 53  KTMQNYIREHFALSQIYPIRVEHSIDGSKKYLFETYD-----GHCFESVLIQMRDKKLGH 107

Query: 114 ---------GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164
                     T+C+SSQ+GC + C+FC+T     VRNL A EI+ QV++ +      P  
Sbjct: 108 KGEVVESEKWTMCLSSQIGCKVGCAFCFTAKGGFVRNLHASEIVEQVVIMKKDNQMAP-- 165

Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
                        K  NIV MGMGEPL N +NV +++ I S+S GLS S RR T+STSG 
Sbjct: 166 ------------HKRVNIVYMGMGEPLDNIENVTRAIEILSESEGLSISARRQTISTSGI 213

Query: 225 VPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
            P I ++G+  +GV LAISLHAV + LR+ L+P+N+ Y +  ++   R +P +   +++ 
Sbjct: 214 APKIKQLGKLNLGVQLAISLHAVDDKLRSQLIPMNKAYNISDILTEVRAFP-IDTRKKVM 272

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343
           FEY+M+KG+ND  + A  L+++L GI AK+NLI FNP  G  +   +  D+  F++ + +
Sbjct: 273 FEYLMIKGVNDDLKSAKKLLQLLNGIKAKVNLILFNPHEGSTFKRPEINDVRAFADFLIK 332

Query: 344 SGYSSPIRTPRGLDILAACGQLKSLSK 370
            G    IR  RG+DI AACGQL+   K
Sbjct: 333 RGLLCTIRESRGIDISAACGQLREKVK 359


>gi|224538713|ref|ZP_03679252.1| hypothetical protein BACCELL_03607 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519681|gb|EEF88786.1| hypothetical protein BACCELL_03607 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 346

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 126/359 (35%), Positives = 186/359 (51%), Gaps = 29/359 (8%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
           +E + ++G+P         QI  W+Y + +     M+++S + R LL   + +     V+
Sbjct: 15  QEVVKRLGMPG----FSAKQIASWLYDKKVNSIDDMTNLSLKHRDLLKDVYEVGAEAPVE 70

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
              S DGT K+L R      G    +E VYIP++ R TLCVSSQVGC + C FC TG Q 
Sbjct: 71  AMRSTDGTVKYLYR-----AGDKNFVEAVYIPDEDRATLCVSSQVGCKMNCKFCMTGKQG 125

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
              NLTA +I+ Q+                          K++N+VMMGMGEPL N D V
Sbjct: 126 FSANLTANQIINQI-------------------NSLPERDKLTNVVMMGMGEPLDNLDEV 166

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257
            K+L I + S G  +S +RITLST G      R  EE    LA+SLH+     R  L+P 
Sbjct: 167 LKALEIMTASYGYGWSPKRITLSTVGLRKGFQRFIEESECHLAVSLHSPVALQRRELMPA 226

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
            + + +  ++D  ++Y   S  RR++FEY++ KG+NDS   A  L+K+L+G+  +INLI 
Sbjct: 227 EKSFSITEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKLLRGLDCRINLIR 285

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376
           F+  PG +   +D + +    + +   G  + IR  RG DI AACG L +  +   K  
Sbjct: 286 FHAIPGVDLEGADMETMTKLRDYLTSHGLFTTIRASRGEDIFAACGMLSTAKQEENKQE 344


>gi|313836797|gb|EFS74511.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL037PA2]
 gi|314929795|gb|EFS93626.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL044PA1]
 gi|314972224|gb|EFT16321.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL037PA3]
 gi|328907651|gb|EGG27415.1| cfr family radical SAM enzyme [Propionibacterium sp. P08]
          Length = 414

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 187/376 (49%), Gaps = 35/376 (9%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           I +  EE  +A+  + +P      R  QI   ++ R   D    +D+ +  R  +   + 
Sbjct: 53  IDLSVEERAQAVKDLSLPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 108

Query: 70  IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
                 V  + SCD   T K L R       G   +E+V +   +      R TLC+SSQ
Sbjct: 109 PALLTEVSRQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARTTLCLSSQ 162

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   + RN++  EI+ QVL A  L         I    IP    ++ N
Sbjct: 163 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEIPGASGRVHN 213

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEP+ N+ +V   +   +     G+  S R +T+ST G VP I  + EE I V 
Sbjct: 214 IVFMGMGEPMANYRSVLTVIRTLTADGPDGMGMSARALTVSTVGLVPRIKALTEERIPVT 273

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ L+P+NR++ ++ L+DA  HY   S   R++ EY ++K IND    
Sbjct: 274 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKSKR-RVSIEYALMKDINDQADR 332

Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           A  L + ++       A +NLIP NP PG  +  S ++D   F E ++R      +R  R
Sbjct: 333 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRREDQDAFVETLERWKIPVTVRDTR 392

Query: 355 GLDILAACGQLKSLSK 370
           G +I  ACGQL ++ +
Sbjct: 393 GSEIDGACGQLAAVGR 408


>gi|313816750|gb|EFS54464.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL059PA1]
 gi|315099197|gb|EFT71173.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL059PA2]
          Length = 405

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           I +  EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  +   + 
Sbjct: 44  IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99

Query: 70  IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
            +    V ++ SCD   T K L R       G   +E+V +   +      R TLC+SSQ
Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   + RN++  EI+ QVL A  L         I    +P    ++ N
Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEP+ N+ +V  ++   +     G+  S R +TLST G VP I  V +E I V 
Sbjct: 205 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKAVTQEGIPVT 264

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ L+P+NR++ ++ L+DA  HY   +   R++ EY ++K IND    
Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 323

Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           A  L + ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  R
Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 383

Query: 355 GLDILAACGQLKSLSK 370
           G +I  ACGQL ++ +
Sbjct: 384 GSEIDGACGQLAAVGR 399


>gi|306819217|ref|ZP_07452928.1| cfr family radical SAM enzyme [Mobiluncus mulieris ATCC 35239]
 gi|304647999|gb|EFM45313.1| cfr family radical SAM enzyme [Mobiluncus mulieris ATCC 35239]
          Length = 401

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 182/375 (48%), Gaps = 25/375 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
                +      E   ++G+       R  QI +  + R   D Q M+D++   R L  Q
Sbjct: 31  IHFADLEPAVRRETAAELGLKA----FRADQIARHYFGRFEADPQLMTDLNARDRELAAQ 86

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
               +   +V +    D T+K L R          E+E+V +    R TLCVSSQVGC +
Sbjct: 87  LLPQLITPVVTKTADQDWTQKTLWRLFD-----GAEVESVLMRYPKRVTLCVSSQVGCGM 141

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L RNL+A EIL QV  +                 +     ++SNIV MG
Sbjct: 142 GCPFCATGQLGLARNLSAGEILEQVRFSAR---------AAATGALGGQETRLSNIVFMG 192

Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGEPL N+  +  SL   +     G   S R + +ST G VP I R+  E I V LA+SL
Sbjct: 193 MGEPLSNYRALLTSLRTITAPVPQGFGISARNLVVSTVGMVPGILRLASEGIPVTLAVSL 252

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  ++LR+ L+P+NR Y +  L+DA   Y   +  RR++ EY +++ +ND P  A  L 
Sbjct: 253 HAPDDELRDALIPMNRHYKVGQLLDAAHEYFE-TTGRRVSIEYALIRDMNDHPWRAQLLA 311

Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
             L       A +N IP NP PG  +  S  + +  F+  +++SG S+ +R  RG DI  
Sbjct: 312 DELNKRGKTWAHVNPIPLNPTPGSIWTASLPRVMEEFTSILRQSGISTTLRDTRGSDIDG 371

Query: 361 ACGQLKSLSKRIPKV 375
           ACGQL + SK   K 
Sbjct: 372 ACGQLATASKNHKKT 386


>gi|160947211|ref|ZP_02094378.1| hypothetical protein PEPMIC_01144 [Parvimonas micra ATCC 33270]
 gi|158446345|gb|EDP23340.1| hypothetical protein PEPMIC_01144 [Parvimonas micra ATCC 33270]
          Length = 348

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 190/364 (52%), Gaps = 29/364 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK     +  EELE+  L +G      + R  Q +++++ +   + +    + + +   L
Sbjct: 4   KKIEFNSLKIEELEDLFLSLG----EKKFRAEQFFRFMHQKKNFEIENCKQLPKVLIEKL 59

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +   I    I  +  S  D T+K+L++     I     IETV++   S  T+C+SSQVG
Sbjct: 60  KEIGYINTSSIYTKYESKLDNTKKYLIKLFDNRI-----IETVFMDYGSYCTVCISSQVG 114

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C+FC +  +   RNLT+ E+L Q+ L  +                  +   I+N+V
Sbjct: 115 CRMGCTFCASTKENFKRNLTSGEMLNQIYLIEN-----------------DLNLTINNVV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG+GEPL N++NV   L I +   G + S R IT+ST G V NI ++ +E + + L IS
Sbjct: 158 IMGIGEPLDNYNNVIGFLKIINSEKGKNLSLRNITISTCGLVHNIYKLADEKLPITLTIS 217

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH      R  ++PI+  + ++ ++ AC++Y   ++  R++FEY ++KG NDS   AL L
Sbjct: 218 LHNPFQKERREIMPISDNFSIDEILKACKYYFDKTSR-RVSFEYTIIKGQNDSREHALEL 276

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ILKG+   IN+IP N     + +    K I +F   ++  G ++ IR  +G DI  AC
Sbjct: 277 KNILKGLNCHINIIPLNSIKEFDGVAPSTKYIYSFKSMLENYGINATIRKKQGDDINGAC 336

Query: 363 GQLK 366
           GQL+
Sbjct: 337 GQLR 340


>gi|296129336|ref|YP_003636586.1| radical SAM enzyme, Cfr family [Cellulomonas flavigena DSM 20109]
 gi|296021151|gb|ADG74387.1| radical SAM enzyme, Cfr family [Cellulomonas flavigena DSM 20109]
          Length = 375

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 118/370 (31%), Positives = 174/370 (47%), Gaps = 26/370 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
              + +  EE   A+  +G        R  Q+    +     D   M+D+ +  R  L  
Sbjct: 23  RHFVDLTPEERVAAVTALG----EKPFRAKQLATHYFTHLTSDADAMTDLPKASRDTLVA 78

Query: 67  HFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                         +  GT  K L            ++E+V +   +R TLCVSSQ GC 
Sbjct: 79  DLFPELLTTSRTLTADHGTTVKTLYHLFD-----GAKVESVLMRYANRTTLCVSSQAGCG 133

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG   L+RNL+  EI+ QV  A   L D           +P    ++SN+V M
Sbjct: 134 LACSFCATGKMGLLRNLSTAEIVEQVRQAARALADGD---------VPGGPTRLSNVVFM 184

Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           GMGEPL N+  V  ++         GL  S R +T+ST G VP + R+  E I V LA+S
Sbjct: 185 GMGEPLANYKAVMATVRRLVAPAPDGLGMSARNVTVSTVGLVPAMDRLAGEGIPVTLALS 244

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVP+N ++ ++  +D+ R Y  ++   R++ EY +++ +ND    A  L
Sbjct: 245 LHAPDDELRSELVPVNTRWSVDEALDSARRYFDVTGR-RVSIEYALIRDVNDHAWRADLL 303

Query: 303 IKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            + L  +G      N IP NP PG  +  SD +    F   ++  G  + IR  RG DI 
Sbjct: 304 GEKLVARGTGWVHCNPIPLNPTPGSRWTASDPQVEAEFVARLRAHGVPTTIRDTRGSDID 363

Query: 360 AACGQLKSLS 369
            ACGQL +  
Sbjct: 364 GACGQLAAEE 373


>gi|189467727|ref|ZP_03016512.1| hypothetical protein BACINT_04119 [Bacteroides intestinalis DSM
           17393]
 gi|189435991|gb|EDV04976.1| hypothetical protein BACINT_04119 [Bacteroides intestinalis DSM
           17393]
          Length = 346

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 126/359 (35%), Positives = 186/359 (51%), Gaps = 29/359 (8%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
           +EA+ ++G+P         QI  W+Y + +     M+++S + R LL   + +     V+
Sbjct: 15  QEAVKRLGMPG----FAAKQIASWLYDKKVNSIDDMTNLSLKHRDLLKDVYEVGADAPVE 70

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
              S DGT K+L R      G    +E VYIP++ R TLCVSSQVGC + C FC TG Q 
Sbjct: 71  AMRSVDGTVKYLYR-----AGDKHFVEAVYIPDEDRATLCVSSQVGCKMNCKFCMTGKQG 125

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
              NLTA +I+ Q+                          K++N+VMMGMGEPL N D V
Sbjct: 126 FTANLTANQIINQI-------------------NSLPERDKLTNVVMMGMGEPLDNLDEV 166

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257
            K+L I + S G  +S +RITLST G      R  E     LA+SLH+     R  L+P 
Sbjct: 167 LKALEIMTASYGYGWSPKRITLSTVGLRKGFQRFIEGSECHLAVSLHSPVALQRRELMPA 226

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
            + + +  ++D  ++Y   S  RR++FEY++ KG+NDS   A  L+K+L+G+  +INLI 
Sbjct: 227 EKAFSITEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKLLRGLDCRINLIR 285

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376
           F+  PG +   +D + +    + +   G  + IR  RG DI AACG L +  +   K  
Sbjct: 286 FHAIPGVDLEGADMETMTKLRDYLTSHGLFTTIRASRGEDIFAACGMLSTAKQEENKQE 344


>gi|71900902|ref|ZP_00683017.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1]
 gi|71729314|gb|EAO31430.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1]
          Length = 309

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 137/308 (44%), Positives = 181/308 (58%), Gaps = 25/308 (8%)

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
            S DGT KWLL            IETVYIP+K RGTLCVSSQ+GC L C+FC T TQ   
Sbjct: 1   HSADGTHKWLLAM---GTDRKNAIETVYIPDKGRGTLCVSSQIGCGLNCTFCSTATQGFN 57

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNLT  EI+ QV +A   LG+ P              R+++N+VMMGMGEPL NFDNV +
Sbjct: 58  RNLTTAEIIGQVWVAARHLGNVPHQR-----------RRLTNVVMMGMGEPLMNFDNVVR 106

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259
           ++S+  D +G   S +R+TLSTSG VP I R+  E  V LA+SLHA ++ LR  LVP+N+
Sbjct: 107 AMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAPNDKLREQLVPLNK 166

Query: 260 KYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIKILKGIPA------- 311
           KYP+  L+ +C  Y  +      +TFEY ++KG+ND    A  L K+++           
Sbjct: 167 KYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELAKLMRQFDCAMQVKGA 226

Query: 312 -KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
            K+NLIPFNP+PG  Y  S + DI  F + +  +   + +R  RG DI AACGQLK    
Sbjct: 227 AKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRGDDIDAACGQLKGQV- 285

Query: 371 RIPKVPRQ 378
            + +  RQ
Sbjct: 286 -VDRTRRQ 292


>gi|313813381|gb|EFS51095.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL025PA1]
          Length = 405

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 188/376 (50%), Gaps = 35/376 (9%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           I +  EE  +A+   G+P      R  QI   ++ R   D    +D+ +  R  +   + 
Sbjct: 44  IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99

Query: 70  IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
            +    V ++ SCD   T K L R       G   +E+V +   +      R TLC+SSQ
Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 153

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   + RN++  EI+ QVL A  L         I    +P    ++ N
Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           IV MGMGEP+ N+ +V   +   +     G+  S R +TLST G VP I  + +E I V 
Sbjct: 205 IVFMGMGEPMANYRSVLTVIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 264

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ L+P+NR++ ++ L+DA  HY   +   R++ EY ++K IND    
Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 323

Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           A  L + ++       A +NLIP NP PG  +  S  +D   F E ++R      +R  R
Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 383

Query: 355 GLDILAACGQLKSLSK 370
           G +I  ACGQL ++ +
Sbjct: 384 GSEIDGACGQLAAVGR 399


>gi|269792997|ref|YP_003317901.1| radical SAM enzyme, Cfr family [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100632|gb|ACZ19619.1| radical SAM enzyme, Cfr family [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 462

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 130/384 (33%), Positives = 194/384 (50%), Gaps = 32/384 (8%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + K   + +  E+    +  +G      R R  Q+  W Y R + +FQ MSD+S E+R+ 
Sbjct: 1   MSKMDALSLSYEDWVREMEALG----EKRFRADQVCGWFYRRHVFEFQLMSDLSLELRNR 56

Query: 64  LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L+  F +  P+++  + S  DGT+K+L  F          +E+V I    R T CVS+QV
Sbjct: 57  LDGAFRVGLPKMLGMRASGRDGTKKFLFDF------DGSSVESVAIWHPGRITACVSTQV 110

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C FC TG     RN+T  E++ Q L   + LG+                  I N+
Sbjct: 111 GCPLGCPFCATGQSGFERNMTVGEMVGQFLAMEARLGE------------------IKNL 152

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           V MGMGEP+ N+ N+  ++   +         R IT+STSG +P I  +  E +GV LA+
Sbjct: 153 VFMGMGEPMLNYHNLIGAIRNLNHPKMRGLGIRHITVSTSGIIPGILNLAREGLGVRLAV 212

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +++LR+ LVPIN +YPL+ L  A   Y  ++   RIT EY +   +NDS   A  
Sbjct: 213 SLHAPNDELRDQLVPINAQYPLKELKRALMEYQEIT-GDRITIEYSLFDQVNDSVPMARQ 271

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L + LKG+ A +NLIP +      +  S    +  F + +   GY   +R  +G D+  A
Sbjct: 272 LGEYLKGLSAFVNLIPGSCVGDQRFRPSPPFRVRAFGDLLTAMGYPVAMRQSKGSDVGGA 331

Query: 362 CGQL-KSLSKRIPKVPRQEMQITG 384
           CGQL + +S  I +   Q  Q  G
Sbjct: 332 CGQLRRQVSPGIQEASPQGGQRGG 355


>gi|315655038|ref|ZP_07907942.1| cfr family radical SAM enzyme [Mobiluncus curtisii ATCC 51333]
 gi|315490694|gb|EFU80315.1| cfr family radical SAM enzyme [Mobiluncus curtisii ATCC 51333]
          Length = 390

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 120/375 (32%), Positives = 184/375 (49%), Gaps = 26/375 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +       ++  EA++  G+       R  Q+ +  + R   D   M+D+    R     
Sbjct: 36  QHFADFDSQQRREAVVAAGMRP----FRADQVARHYFGRFEADPAQMTDLGPADRERARD 91

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
               +   +V +      TRK L R          ++E+V +    R TLCVSSQVGC +
Sbjct: 92  LLPELITPVVTQVADKGWTRKTLWRLFD-----GAQVESVLMRYPKRVTLCVSSQVGCGM 146

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L RNL+A EIL QV LA     D                 ++SN+V MG
Sbjct: 147 GCPFCATGQLGLTRNLSAAEILEQVRLAARAAQD----------GELGSPARLSNLVFMG 196

Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGEPL N+ ++  ++   +     G   S R + +ST G VP I ++ +E + V LA+SL
Sbjct: 197 MGEPLANYKSLLHTIRTLTAEVPQGFGISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSL 256

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  ++LRN L+P+NR+Y ++ L+D    Y   +   R++ EY +++ +ND P  A  L 
Sbjct: 257 HAPDDELRNELIPMNRRYQVDELLDTAYAYFQATGR-RVSIEYALIRDMNDHPWRAQLLA 315

Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
             L       A +N IP NP PG  +  S  + +  F E ++++G S+ +R  RG DI  
Sbjct: 316 DKLNERGKTWAHVNPIPLNPTPGSIWDASLPRVMDEFMEILRQAGISTTLRDTRGSDIDG 375

Query: 361 ACGQLKSLSKRIPKV 375
           ACGQL + +K+ P  
Sbjct: 376 ACGQLAAKAKQSPAA 390


>gi|145224701|ref|YP_001135379.1| radical SAM protein [Mycobacterium gilvum PYR-GCK]
 gi|205829813|sp|A4TC75|RLMN_MYCGI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145217187|gb|ABP46591.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium gilvum
           PYR-GCK]
          Length = 365

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 183/375 (48%), Gaps = 32/375 (8%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             L       +   E   A+  +G+P      R  Q+    + R I D   M+D+   VR
Sbjct: 14  RALPPRHFADLADTERAAAVADLGLPA----FRGKQLANQYFGRLISDPSQMTDLPAGVR 69

Query: 62  HLLNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
             +         E    +I CD   TRK L R   +        E+V +    R T+C+S
Sbjct: 70  DQVGAALFPELLE-AAREIECDRGETRKVLWRAVDKTT-----FESVLMRYPDRNTVCIS 123

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ GC + C FC TG   L RNL+  EIL QV  A + L D               G ++
Sbjct: 124 SQAGCGMACPFCATGQGGLKRNLSTAEILEQVRFASAELRD-------------REGGRL 170

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
           SNIV MGMGEPL N++ V  ++   +     G   S R +T+ST G  P I ++ +E + 
Sbjct: 171 SNIVFMGMGEPLANYNRVVAAVRRITASSPHGFGISARSVTVSTVGLAPAIRKLADEKLN 230

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V LA+SLH   ++LR+ LVP+N ++ ++ ++DA R+Y  L+   R++ EY +++ +ND P
Sbjct: 231 VTLAVSLHTPDDELRDTLVPVNNRWKVDEVLDAARYYADLTGR-RVSIEYALIRDVNDQP 289

Query: 297 RDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
             A  L + L    G    +NLIP NP PG E+  S +     F   ++  G S  +R  
Sbjct: 290 WRADLLGRKLHATLGPLVHVNLIPLNPTPGSEWDASPKPVEREFVRRVRAKGVSCTVRDT 349

Query: 354 RGLDILAACGQLKSL 368
           RG +I AACGQL + 
Sbjct: 350 RGREIAAACGQLAAQ 364


>gi|327398526|ref|YP_004339395.1| Ribosomal RNA large subunit methyltransferase N [Hippea maritima
           DSM 10411]
 gi|327181155|gb|AEA33336.1| Ribosomal RNA large subunit methyltransferase N [Hippea maritima
           DSM 10411]
          Length = 342

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 124/367 (33%), Positives = 203/367 (55%), Gaps = 31/367 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             ++ +  +EL+  L+ +G      + R  QI+ ++Y + I  F  ++ + +EVR  L +
Sbjct: 2   IDIMSLEYDELKSILIGLGYE----KYRAEQIFSFLYKQRIEGFDDITVLKKEVRRQLKE 57

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCS 125
            F I   E      + DGT+K+L +     +     IE+V IP E +R T+CVS+Q GC 
Sbjct: 58  QFFIYKIEEKTSYAADDGTKKYLFKLNDGML-----IESVLIPMEANRFTICVSTQAGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG     RNL+  EI+ QV+    +                    K +N+V M
Sbjct: 113 MGCKFCATGRMGFKRNLSTSEIVSQVVYILKVN-----------------NLKTANVVYM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
           GMGEPL N++N  KS+ I SD  GLS SKRRITLST+G  P + ++ +++  + +A+SLH
Sbjct: 156 GMGEPLDNYENTVKSIKILSDDRGLSISKRRITLSTAGITPGVNKLKKDLPNINMALSLH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           ++ +  R++++PIN  YP++ +++  + +P +   +RITFEYVM+KGIND+  D   L+K
Sbjct: 216 SIISKKRSMIMPINDTYPIDEVLNELKDFP-MPRRKRITFEYVMIKGINDTKDDLKALLK 274

Query: 305 ILKGIPAKINLIPFNPWP--GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           ++     K+N+IP N     G ++  +    I  F++ ++  G    IR  +G  I AAC
Sbjct: 275 VMSNFKCKLNIIPLNKHDLLGTKFEPTPMDRIEEFADYLRNKGMFVTIRKSKGSSINAAC 334

Query: 363 GQLKSLS 369
           G L + +
Sbjct: 335 GMLATKA 341


>gi|225449545|ref|XP_002283725.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296086245|emb|CBI31686.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 190/374 (50%), Gaps = 38/374 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
           L+GM  +EL++  L +G        R  Q+   IY R +++ Q  S + Q  R+ L +  
Sbjct: 45  LLGMSEQELQQLSLDLG----QQSYRGKQLHHLIYKRKVKEIQHFSQLPQAFRNDLQEGG 100

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQV 122
           + +    I     + DGT K L++     +     +ETV IP +      R T CVSSQV
Sbjct: 101 WRVGRSSIYQSVTAADGTVKLLIKLADNRL-----VETVGIPVEHDKGSFRLTACVSSQV 155

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L CSFC TG     RNL   EI+ QVL    +                    +++N+
Sbjct: 156 GCPLRCSFCATGKGGYSRNLQRHEIVEQVLAIEEIFKQ-----------------RVTNV 198

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V MGMGEP+ N  +V ++    +    +   +R IT+S+ G    I ++   ++   LAI
Sbjct: 199 VFMGMGEPMLNLKSVIEAHRCLNKD--VQIGQRMITISSVGVPNTIKKLASYKLQSTLAI 256

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +  LR  +VP  + YPL+ ++  CR Y  L  +RR++FEY +L G+ND+   A+ 
Sbjct: 257 SLHAPNQKLRETIVPSAKSYPLDAIMKDCRDYF-LETSRRVSFEYTLLAGVNDAVEHAIE 315

Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L ++L   G    +NLIPFNP  G E+     K +  F+  ++    +  +R  RGLD  
Sbjct: 316 LAELLHEWGPGYHVNLIPFNPIEGSEFQRPYNKAVQAFAGALESRKVTVSVRQTRGLDAS 375

Query: 360 AACGQLKSLSKRIP 373
           AACGQL++  ++IP
Sbjct: 376 AACGQLRNEFQKIP 389


>gi|162453111|ref|YP_001615478.1| radical SAM superfamily protein [Sorangium cellulosum 'So ce 56']
 gi|205829655|sp|A9FFJ6|RLMN_SORC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|161163693|emb|CAN94998.1| Radical SAM superfamily protein [Sorangium cellulosum 'So ce 56']
          Length = 389

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 149/398 (37%), Positives = 207/398 (52%), Gaps = 63/398 (15%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEI 75
           EE    +            Q+++WI+ RG+ D   M+++   +R  L       ++ PE 
Sbjct: 14  EEWSASLAAR-GERSFTAKQVFQWIHRRGVLDPAAMTNLPARLREHLAAEGLGEVLTPER 72

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----------------------- 112
           V    S DGTRK LLR           IETV +P  S                       
Sbjct: 73  VHR--SEDGTRKLLLRLRD-----GATIETVLLPSVSGPGSQAQLDADAAAALDDDEDDD 125

Query: 113 -----------RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
                      R T C+S+QVGC++ C FC +G   L R+L AEEI  QVLL R++L + 
Sbjct: 126 AAAEAGAAPRVRVTQCISTQVGCAMGCGFCASGVAGLKRHLGAEEIAGQVLLGRAMLEE- 184

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
                         G ++ N+V MGMGEPL N++   +SL + +   G++ S RR+T+ST
Sbjct: 185 --------------GEELRNVVYMGMGEPLHNYEATARSLRLLTHPEGINLSTRRVTVST 230

Query: 222 SGFVPNIARVGEEI--GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           SG VP IAR+G +    + LAISLHA  ++ R+ L+PINRK+PL+ L+ A R YP L   
Sbjct: 231 SGLVPEIARLGADFGGQIALAISLHAADDETRSALMPINRKHPLDELLAALRAYP-LPRR 289

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339
           RRIT EY ++ G ND P +A  L K+L+G+P KINLIP NP          Q+ +  F E
Sbjct: 290 RRITIEYTLVAGQNDDPAEARRLAKLLRGLPVKINLIPMNPIEASSLGPPAQERVAAFQE 349

Query: 340 CIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
            + ++GYS  +R  RG D+ AACGQL  L  + PKV R
Sbjct: 350 VLTQAGYSCFVRRRRGDDVSAACGQLVLLGAK-PKVRR 386


>gi|194336581|ref|YP_002018375.1| radical SAM enzyme, Cfr family [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|254807191|sp|B4SA62|RLMN_PELPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|194309058|gb|ACF43758.1| radical SAM enzyme, Cfr family [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 359

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 190/378 (50%), Gaps = 30/378 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +++++  +   EL++AL  +G P      R +QI +W++      F+ M+ +S  +R  L
Sbjct: 4   QQQNITDLTLTELQQALSLLGEPA----FRATQIHQWLFSHHAASFEEMTILSLALRKKL 59

Query: 65  NQHFSIIYPEIVDEKI--SCD---GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           ++ FSI   + V+ +     D    T K LL    +       +E+V I  ++R T CVS
Sbjct: 60  SESFSIHPLKRVEHQECFEEDCESPTEKILLELQDKS-----RVESVLIATENRRTACVS 114

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ+GC L C FC TG     RNLTA EI  Q+     L+G                G+ +
Sbjct: 115 SQIGCPLQCPFCATGQMGFRRNLTAGEITGQIYALNELVG------------AKEPGKSL 162

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIA-SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           +NIV MGMGEPL N  NV +++    + +     S++RIT+ST G +P I R+G+  +  
Sbjct: 163 TNIVFMGMGEPLLNTGNVIEAIETLSTRNYRFCLSQKRITISTVGVIPEIQRLGKSGMKT 222

Query: 238 MLAISLHAVSNDLRNILVPIN-RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            LA+SLHA     R  L+PI  R+YPL+ L  A   Y   S    +T  Y++LKGINDS 
Sbjct: 223 KLAVSLHAADQQKRESLMPIASRQYPLKELGTALSEYTQ-STGMPVTIVYLLLKGINDSL 281

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
            DA  L +  K    KINLI +N     ++          F + +  SG    IR   G 
Sbjct: 282 DDAKMLARFSKTFLCKINLIDYNSIINIKFKPVYSATRDMFQQYLINSGLHVTIRKSYGT 341

Query: 357 DILAACGQLKSLSKRIPK 374
            I AACGQL + S + P+
Sbjct: 342 TINAACGQLATASMQNPQ 359


>gi|145340644|ref|XP_001415431.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575654|gb|ABO93723.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 340

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 115/350 (32%), Positives = 174/350 (49%), Gaps = 36/350 (10%)

Query: 33  MRTSQIWKWIYVRG---IRDFQGMSDISQEVRHLLN-QHFSIIYPEIVDEKISCDGTRKW 88
            R  QI   +Y       R     + +S+++R  L   +  +          + DGT K 
Sbjct: 4   FRGKQIADHLYAPNGASARSVDDFTTLSKKLREELKSANVRVGRSRRHHVAAASDGTAKL 63

Query: 89  LLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
           LLR     +     +ETV IP     K+R T CVSSQVGC + C+FC TG     RNL  
Sbjct: 64  LLRLDDDRV-----VETVGIPATENGKNRLTACVSSQVGCPMRCTFCATGKGGFARNLAP 118

Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
            EI+ QVL      G                  ++SN+V MGMGEPL N  NV K+    
Sbjct: 119 HEIVDQVLALEEYFGQ-----------------RVSNVVFMGMGEPLLNVPNVLKAHEAL 161

Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPL 263
           +    +    R IT+ST G   +I ++   ++  +LA+SLHA + +LR  ++P  + YP+
Sbjct: 162 NKE--IGIGARHITISTVGVRGSIEKLAHAQLQSVLAVSLHAPNQELRETIIPSAKVYPM 219

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPW 321
           E L+  C  Y  ++  RR+TFEY +L GIND P  A  L ++L  + + + +NLIP+NP 
Sbjct: 220 EDLLQDCEQYF-VATGRRVTFEYTLLGGINDQPEHAKELGRLLYARNLASHVNLIPYNPV 278

Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
              +Y    +  +  F + ++     + IR  RGL+  AACGQL++  ++
Sbjct: 279 DDSDYQRPSRATVYAFRDILEGLNVPASIRQTRGLEAAAACGQLRNAFQK 328


>gi|300742035|ref|ZP_07072056.1| radical SAM enzyme, Cfr family [Rothia dentocariosa M567]
 gi|311111949|ref|YP_003983171.1| cfr family radical SAM enzyme [Rothia dentocariosa ATCC 17931]
 gi|300381220|gb|EFJ77782.1| radical SAM enzyme, Cfr family [Rothia dentocariosa M567]
 gi|310943443|gb|ADP39737.1| cfr family radical SAM enzyme [Rothia dentocariosa ATCC 17931]
          Length = 409

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 184/372 (49%), Gaps = 19/372 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + +         E L ++G        R SQ+ K  + R + D   M+D+  + R  +  
Sbjct: 48  KHIADFDMAGRREFLKELGY----QPFRASQLSKHYFERLVNDPAQMTDLPAQDRDEIVS 103

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                    V   +  DG  T K + R     +     IE+V +   +R T+C+SSQ GC
Sbjct: 104 RAMPQLLTPV-RTLEADGGDTLKVVHRLFDGAL-----IESVIMRYDNRVTMCISSQAGC 157

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG Q L RNL+  EI+ QV+     L    G +  +G    +   ++SNIV 
Sbjct: 158 GMNCPFCATGQQGLTRNLSTAEIVEQVVAGARYLKQMKGLDKADGGSEDTRPLRVSNIVF 217

Query: 185 MGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241
           MGMGE L N+ +   ++    D    GL  S R +T+ST G VP I +   E++ + LA+
Sbjct: 218 MGMGEALANYKSTMGAVHRLIDPAPEGLGISARGLTMSTVGLVPGIRKFELEKLPITLAL 277

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ L+PIN+++ ++  +DA   Y   +  RRI+ EY +++ IND    A  
Sbjct: 278 SLHAPDDELRDELIPINQRWKVDETLDAAYDYY-RTTGRRISIEYALIRDINDQGWRADL 336

Query: 302 LIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L K L  +G     +N IP NP PG ++  S +     F E ++  G  + IR  RG DI
Sbjct: 337 LGKKLAQRGRGWVHVNPIPLNPTPGSKWTASRKGVEQNFVERLRAHGIPTTIRDTRGSDI 396

Query: 359 LAACGQLKSLSK 370
             ACGQL +  +
Sbjct: 397 DGACGQLAAKEE 408


>gi|257068200|ref|YP_003154455.1| ribosomal RNA large subunit methyltransferase N [Brachybacterium
           faecium DSM 4810]
 gi|256559018|gb|ACU84865.1| radical SAM enzyme, Cfr family [Brachybacterium faecium DSM 4810]
          Length = 429

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 183/370 (49%), Gaps = 27/370 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L  +   E   A+ ++G+P      R  Q+    +       + ++D+ ++ R  L +
Sbjct: 53  VHLADLSLTERVAAVEEMGLPG----FRAKQLSVHYFEHFTTAAEDLTDLPRDRRDELVE 108

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F       V  + +  G T+K+L +     +     +E+V +    R TLC+SS+ GC 
Sbjct: 109 RFFPPLLTQVSRQSADHGATQKFLWQLFDGPM-----VESVLMRYSDRNTLCISSEAGCG 163

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+A EIL QV +A  +         +    +P    +++NIV M
Sbjct: 164 MNCPFCATGQMGLTRNLSAAEILEQVRIANRM---------LAREELPGGPGRVNNIVFM 214

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242
           GMGEPL N+  V       +     G     R IT+ST G  P + ++  E+I V LA+S
Sbjct: 215 GMGEPLANYRPVATVCKRLNAPAPEGFGMGARHITVSTVGLAPAVRKLTAEKIPVTLAVS 274

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  + LR+ LVPIN ++ ++ ++DA   Y   +   R++ EY +++ IND    A  L
Sbjct: 275 LHAPDDALRDELVPINTRFDVDEILDAAWEYFEATGR-RVSIEYALIRDINDQQHRAQLL 333

Query: 303 IKIL--KG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
            + L  KG      +N IP NP  G ++  SD +   TF E ++ +G S+ IR  RG DI
Sbjct: 334 AERLIAKGGAHWVHVNPIPLNPVKGSKWTASDPQVEKTFVETLRDNGISATIRDTRGSDI 393

Query: 359 LAACGQLKSL 368
             ACGQL + 
Sbjct: 394 DGACGQLAAE 403


>gi|328956372|ref|YP_004373705.1| 23S rRNA m(2)A-2503 methyltransferase [Coriobacterium glomerans
           PW2]
 gi|328456696|gb|AEB07890.1| 23S rRNA m(2)A-2503 methyltransferase [Coriobacterium glomerans
           PW2]
          Length = 348

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 112/373 (30%), Positives = 178/373 (47%), Gaps = 30/373 (8%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N +    +  +  +++  A+ ++  P      R +Q+ +W++ +    F  M+++ +  R
Sbjct: 5   NQM--RDIRSLSDDDIRSAVAQLDQP----MFRATQVLEWLHKKNASSFDEMTNLPKSFR 58

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
             L + FS   P  + ++IS D TRK+LL F        V +E V IP + + T C+S+Q
Sbjct: 59  TQLAERFSFAVPRQIAQQISRDRTRKYLLEFSD-----GVSVEAVGIPGRGKLTACISTQ 113

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C+FC TG   L R+ TA E++ QVL                         ++++
Sbjct: 114 AGCGMRCAFCATGLAGLARSCTAREMVDQVLHIAR-----------------DFNERVTS 156

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240
           +V MG GEP  NFD   ++L   +D  GL    R +T+ST G +P I    +      LA
Sbjct: 157 VVFMGQGEPFANFDETVRALRTLNDPRGLKIGARHLTVSTCGIIPGIRAFAKLPEQFTLA 216

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLH+ S   RN L+P  +KY L  L +A + Y   +   R T+E  M++GIND+  +  
Sbjct: 217 ISLHSASQQTRNQLMPGVKKYTLPRLYEALQEYVEATGR-RPTYEIAMIEGINDTNPEMR 275

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            +    +G    +NLI  + +P  E   S    +    + +   G  + IR  RG DI A
Sbjct: 276 AICDFCEGTLCHVNLIQLSDFPDSELHPSPLFKLEELQKRLTARGVQTTIRCSRGADIDA 335

Query: 361 ACGQLKSLSKRIP 373
           ACGQLK       
Sbjct: 336 ACGQLKQRRPNAR 348


>gi|30687969|ref|NP_850319.1| radical SAM domain-containing protein [Arabidopsis thaliana]
 gi|330254611|gb|AEC09705.1| radical SAM domain-containing protein [Arabidopsis thaliana]
          Length = 431

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 187/385 (48%), Gaps = 36/385 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67
           LIGM   EL+E  + + +       R  Q+   IY R +   +  S++    R  L    
Sbjct: 64  LIGMSEPELQELAINL-VLIFQEGYRGKQLHHLIYKRKVNKVEDFSNLPLTFRKGLVDGG 122

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121
           F +    I     + DGT K         +   + IETV IP +       R T CVSSQ
Sbjct: 123 FKVGRSPIYQTVTATDGTIK-----LLLKLEDNLLIETVGIPVQDDEKGITRLTACVSSQ 177

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC L CSFC TG     RNL   EI+ QVL    +                    +++N
Sbjct: 178 VGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKH-----------------RVTN 220

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
           +V MGMGEP+ N  +V  +    +    +   +R IT+ST G    I ++   ++   LA
Sbjct: 221 VVFMGMGEPMLNLKSVLDAHRCLNKD--IEIGQRMITISTVGVPNTIKKLASHKLQSTLA 278

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +  LR  +VP  + YPLE ++  CR Y   +N  R++FEY +L G+ND    A+
Sbjct: 279 VSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETNR-RVSFEYALLAGVNDQVEHAV 337

Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
            L ++L+  G    +NLIP+NP  G EY    +K ++ F+  ++    ++ +R  RGLD 
Sbjct: 338 ELAELLREWGKTYHVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGLDA 397

Query: 359 LAACGQLKSLSKRIPKVPRQEMQIT 383
            AACGQL++  ++ P +   + Q +
Sbjct: 398 SAACGQLRNKFQKSPLLTETDSQES 422


>gi|110597428|ref|ZP_01385715.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
 gi|110340972|gb|EAT59443.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
          Length = 362

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 128/378 (33%), Positives = 194/378 (51%), Gaps = 32/378 (8%)

Query: 1   MNFLKK--ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58
           M  +     ++I +   EL+ A+  +  P      R +QI +W++    + F+ M+ +S+
Sbjct: 1   METMTTALPNIIDLSFPELQHAIASLDEPS----FRAAQIHQWLFSHQAKSFEEMTTLSR 56

Query: 59  EVRHLLNQHFSIIYPEIVDE----KISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSR 113
            +R  L + FSI + ++VD     + S D  T K LL+ P   +     IETV IP ++R
Sbjct: 57  TLRQKLAETFSISHLQLVDHLESTEESGDNLTEKILLKLPDNEL-----IETVLIPAENR 111

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T C+SSQ GC+  C+FC TG   L RNLTA EI  QV    +++             + 
Sbjct: 112 LTACLSSQAGCAFQCTFCATGKMGLHRNLTAGEIAGQVYALNAIV------------SMR 159

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS-DSMGLSFSKRRITLSTSGFVPNIARVG 232
              +KI+NIV MGMGEPL N+DN+ +S+   +  +  ++ S+++IT+ST G +P I ++G
Sbjct: 160 KPDKKITNIVFMGMGEPLMNYDNILESIETLTTKNYNVTLSQKKITISTVGVIPQIRKLG 219

Query: 233 EE-IGVMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRITFEYVMLK 290
              +   LA+SLHA     R  L+P+  K YPL  L  A   Y   + A  +T  Y++ K
Sbjct: 220 ASGLKTKLAVSLHAAEQQKRESLMPVAAKLYPLNELGKALAGYSSAT-AMPVTIVYMLQK 278

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           GINDS  DA  L +   G   KINLI +N      +   +      F + +  SG    +
Sbjct: 279 GINDSLEDAKLLARFAHGFLCKINLIDYNSIINIRFKPVNSSSREVFQQYLIDSGLHVTV 338

Query: 351 RTPRGLDILAACGQLKSL 368
           R   G  I AACGQL + 
Sbjct: 339 RKSYGTTINAACGQLATT 356


>gi|182412656|ref|YP_001817722.1| radical SAM protein [Opitutus terrae PB90-1]
 gi|205829647|sp|B1ZVM5|RLMN2_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 2;
           AltName: Full=23S rRNA m2A2503 methyltransferase 2
 gi|177839870|gb|ACB74122.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1]
          Length = 428

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 131/385 (34%), Positives = 195/385 (50%), Gaps = 31/385 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L    R EL   L +  +   H     ++IW ++Y+  +  F  M+++   VR  L  
Sbjct: 53  TNLYDFTRAELRLWLSRRELNPVH----AARIWSYLYLDLVEGFGAMTELPARVRARLEA 108

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              +   +I  E  S DG TRK+LL            IETV +    R T CVSSQVGC+
Sbjct: 109 EMCVGNLKIARETDSRDGFTRKYLLEL-----ADGAAIETVLMRFAGRATACVSSQVGCA 163

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARS------------LLGDFPGCEDIEGMVIP 173
           + C FC TG     R+LTA EI+ Q +                +    PG E  E     
Sbjct: 164 MGCVFCATGQMGYTRHLTAGEIVAQAVHVARALRTAAFEKCHVMRDPSPGREAGEKSRDE 223

Query: 174 SVGR------KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
           +         ++ N+V+MGMGEPL N++ V +++ I  D  GL+    RITLST G VP 
Sbjct: 224 ADRHRAPPTPRLRNLVLMGMGEPLHNYEAVMRAVDILRDDGGLALGAERITLSTVGVVPG 283

Query: 228 IARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
           I R+  E+  V LA+SLHA   + R  LVP+ +K+PL+ L+ ACR Y   +  RR+ +E+
Sbjct: 284 ILRLAAEKRPVHLAVSLHAADQEERAALVPVAKKWPLDELMAACRTYSE-TTGRRVFYEW 342

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI-KRSG 345
            +++G ND+   A  + ++L+G+PA++NLIP NP  G +      +    F E + +   
Sbjct: 343 TLIEGRNDTAAHARAVGRLLRGLPAQVNLIPLNPTAGYDGTPGRTEAARRFQEILSREFA 402

Query: 346 YSSPIRTPRGLDILAACGQLKSLSK 370
             S +R  RG+DI A CGQL    +
Sbjct: 403 LPSTVRQRRGIDIAAGCGQLAVAEQ 427


>gi|78188796|ref|YP_379134.1| hypothetical protein Cag_0825 [Chlorobium chlorochromatii CaD3]
 gi|123770876|sp|Q3ASD4|RLMN_CHLCH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78170995|gb|ABB28091.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium chlorochromatii
           CaD3]
          Length = 366

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 185/373 (49%), Gaps = 32/373 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L+ +   EL  A+   G P      R  QI +W++      F  MS +   +R  L +
Sbjct: 14  INLVDLRYNELHNAITAFGEPP----FRAKQIHEWLFSHHANSFAAMSSLPLRLREKLAE 69

Query: 67  HFSIIYPEIVDEKISCDG-----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            F++  PE+V+ + SC+      TRK LL+     +     IE V IP + R T C+SSQ
Sbjct: 70  RFTLQRPEVVEVQESCESGCLRPTRKILLKLSDGAL-----IECVLIPAEERMTACLSSQ 124

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C+FC TGT  L RNL+A EI  Q+                   +    G+ I+N
Sbjct: 125 AGCPMQCTFCATGTMGLQRNLSAGEIWEQLYALN--------------GLALQEGKTITN 170

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           +V MGMGEPL N DNV ++++  S  +  LS S+R+IT+ST G VP I R+    +   L
Sbjct: 171 VVFMGMGEPLLNTDNVLEAIATMSSRNYNLSLSQRKITISTVGIVPEIERLSRSGLKTKL 230

Query: 240 AISLHAVSNDLRNILVPINR-KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           A+SLH+   ++R  L+PI   +YPL +L  +   Y   +    IT  Y+ML G+NDS  D
Sbjct: 231 AVSLHSARQEVRQQLMPIAAERYPLPLLSKSLEAY-SKATGEAITIVYMMLNGVNDSKED 289

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L +  +    KINLI +NP     +    +     F   +    +   +R   G  +
Sbjct: 290 AHLLARYCRHFSCKINLIDYNPILTIRFGSVQESQKNEFQAYLMAQKFHVTVRKSYGASV 349

Query: 359 LAACGQLKSLSKR 371
            AACGQL +  +R
Sbjct: 350 NAACGQLVTQQQR 362


>gi|294790917|ref|ZP_06756075.1| radical SAM enzyme, Cfr family [Scardovia inopinata F0304]
 gi|294458814|gb|EFG27167.1| radical SAM enzyme, Cfr family [Scardovia inopinata F0304]
          Length = 424

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 182/366 (49%), Gaps = 27/366 (7%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
            M +EE   A+ K+G P      R  Q+ +  +    R+    SD  Q+   ++   F  
Sbjct: 58  DMDQEERAAAMAKLGYPS----FRVKQLGQHYFAHYNREVSSYSDFPQQQAQVVENTFFP 113

Query: 71  IYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
                + E+ +  GT  K L       +     IE+V +   +R TLC+SSQVGC + C 
Sbjct: 114 SLIRPLAEQEADQGTTVKTLW-----GLFDGSRIESVLMKYPTRTTLCISSQVGCGMGCP 168

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG   L RN++A EIL QV  A     D                 ++SN+V MGMGE
Sbjct: 169 FCATGKLGLTRNMSAGEILEQVRYAARQARD----------GRLGQPSRLSNVVFMGMGE 218

Query: 190 PLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
            L N+  + K++   S     G   S R IT+ST G VP I R+  E I V LA+SLHA 
Sbjct: 219 ALGNYKAMMKAIRQISALPPDGFGISARNITVSTVGIVPGIRRLMTEGIPVRLAVSLHAP 278

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           S+ LR+ LVP+N+++ +  ++DA   Y  ++  RR++ EY ++KGIND  + A  L K L
Sbjct: 279 SDSLRDELVPMNKRFAISQVLDAAHDYY-VATKRRVSIEYALMKGINDQAQHARLLAKRL 337

Query: 307 K---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
                    +N IP NP  G  +  S  +D   F + + ++G ++ +R  RG DI  ACG
Sbjct: 338 NHYGDDWVHVNPIPLNPIEGSRWTASKPEDEKRFLDILHQAGIAATLRDTRGSDIDGACG 397

Query: 364 QLKSLS 369
           QL +  
Sbjct: 398 QLAAKE 403


>gi|168702822|ref|ZP_02735099.1| hypothetical protein GobsU_25056 [Gemmata obscuriglobus UQM 2246]
          Length = 355

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 121/360 (33%), Positives = 187/360 (51%), Gaps = 19/360 (5%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  E L   L + G P     MR +QI K I       F+ MSD+ + +R  L   F + 
Sbjct: 1   MPAETLRAWLTERGQPP----MRVNQICKQILANRATAFEDMSDLPKGLRADLAGAFRVF 56

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
              +     + D T K++LR           IE V I +  R T C+S+QVGC + C FC
Sbjct: 57  SMSVERHFAASDDTHKFVLRL-----ADGRMIEAVLIQDDGRATACISTQVGCGMGCVFC 111

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            +G   +VRNLTA E++ Q++L R+L               P    ++++IV+MGMGEPL
Sbjct: 112 ASGLNGVVRNLTAGEMVEQLVLLRNLTD--------ANSTNPERAPRLTHIVVMGMGEPL 163

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDL 250
            N DN+  +L++A D  GL    R +T+ST G    I ++ E      LA+SLHA +++L
Sbjct: 164 ANLDNLLDALAVAGDKNGLGIGARHVTISTVGLPAKIRKLAESGKQYHLAVSLHAPNDEL 223

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R  +VP N K  ++ ++ A   +   +  + +T+EYV+L G+ND    A  L  +L+G  
Sbjct: 224 RTRIVPTNDKVGMDAILAAADEFYEKTGRQ-VTYEYVVLGGLNDQAPHARQLAGLLRGRQ 282

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           A +NLIP+N   G  +      D+    + ++R G S  +R  +G +I AACGQL+  ++
Sbjct: 283 AHVNLIPWNAVEGLAFKRPADADLQYLIDTLRRGGISVKVRKRKGAEIDAACGQLRRQAE 342


>gi|291287807|ref|YP_003504623.1| radical SAM enzyme, Cfr family [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884967|gb|ADD68667.1| radical SAM enzyme, Cfr family [Denitrovibrio acetiphilus DSM
           12809]
          Length = 357

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 186/371 (50%), Gaps = 27/371 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  M + ELE  ++  G+     + R  QI KW+Y RG      M+D+S   R  L    
Sbjct: 7   LDSMNKFELENFVISQGM----QKFRAIQIHKWVYRRGAESVAEMTDLSIADREKLLGMA 62

Query: 69  SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
                 + D + S  DG+ K+L             IE V + +  R T C+SSQVGC + 
Sbjct: 63  KFTVMNVADVRKSAMDGSVKFLFSLED-----GETIEAVVLNDGRRLTACISSQVGCRMG 117

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC T    L RNLT  EI+ QV                    + S G K++N+V MGM
Sbjct: 118 CAFCSTAKMGLRRNLTMGEIIKQV--------------KRLNEYLASEGTKLNNLVFMGM 163

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAV 246
           GEPL N DNVK ++++  D  G  FS ++ITLST G    +  +   +  V LA+S++A 
Sbjct: 164 GEPLDNLDNVKNAINVLLDDDGYGFSHKKITLSTCGLTDRLEELFAMDTPVNLAVSVNAA 223

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
             + R  L+P++ KYPL  L+D  +  P L   + IT EYV+L+G+ND+  DA  L K+L
Sbjct: 224 DQETRKGLMPVSNKYPLSGLMDVLKKLP-LQKRKSITIEYVLLRGVNDTLDDARKLAKLL 282

Query: 307 KGI-PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +G+   KINLI +N      YL   +KD + F E +  +     IR   G DI  ACGQL
Sbjct: 283 RGLDKVKINLITYNSGGDAGYLPPSEKDTLKFQEYLISNKIGVFIRKSLGRDIEGACGQL 342

Query: 366 KSLSKRIPKVP 376
           ++      K  
Sbjct: 343 RAKHDESQKSE 353


>gi|152965388|ref|YP_001361172.1| ribosomal RNA large subunit methyltransferase N [Kineococcus
           radiotolerans SRS30216]
 gi|205829778|sp|A6W7W9|RLMN_KINRD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|151359905|gb|ABS02908.1| radical SAM enzyme, Cfr family [Kineococcus radiotolerans SRS30216]
          Length = 391

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 180/377 (47%), Gaps = 28/377 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
              + +   E   A++++G        R  Q+    + R   D   M+D+    R  + +
Sbjct: 35  RHFVDLEPAERGPAMVELG----EKAFRGKQLATQWFERLEDDPARMTDLPAASRTRIAE 90

Query: 67  HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                    +   ++ DG  T K L R     +     +E+V +  K+R T+C+SSQ GC
Sbjct: 91  ALLPTLLTPI-RTLTADGGTTIKSLYRLHDGAL-----VESVLMRYKNRDTICISSQAGC 144

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EI+ QV  A            +    +P    ++SN+V 
Sbjct: 145 GMNCPFCATGQAGLTRNLSTAEIVEQVTAASR---------ALARDEVPGGPGRVSNVVF 195

Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241
           MGMGE L N+ +   ++         GL  S R +T+ST G VP I +  +E I   LA+
Sbjct: 196 MGMGEALANYKSAVAAVRRLVSPAPDGLGISARGVTMSTVGLVPAIDKFAQEGIAATLAL 255

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  ++LR+ LVPIN+++ +   +DA R Y   +   R++ EY ++K IND    A  
Sbjct: 256 SLHAPDDELRDELVPINQRWKVGEALDAARRYFEATGR-RVSIEYALIKDINDQAWRADR 314

Query: 302 LIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L K+L  +G     +N IP NP PG ++  SD      F   ++  G  + +R  RG DI
Sbjct: 315 LGKLLNARGRGWVHVNPIPLNPTPGSKWTASDPAVERAFVAALENRGIPTTVRDTRGSDI 374

Query: 359 LAACGQLKSLSKRIPKV 375
             ACGQL ++    P+ 
Sbjct: 375 DGACGQLAAIGPEQPRA 391


>gi|309811464|ref|ZP_07705246.1| 23S rRNA m2A2503 methyltransferase [Dermacoccus sp. Ellin185]
 gi|308434515|gb|EFP58365.1| 23S rRNA m2A2503 methyltransferase [Dermacoccus sp. Ellin185]
          Length = 394

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 178/372 (47%), Gaps = 23/372 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L        +    ++G+P      R  Q+    + R + D   M+D+ +  R  +  
Sbjct: 36  KHLADFDLAGRQALAKELGLPA----FRAKQLSNHYFERFVADPAEMTDLPKNGREEMVA 91

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                    +   ++  G T K + R     +     +E+V +    R T+C+SSQ GC 
Sbjct: 92  QLMPTLLTSIKTLVADGGNTLKQVHRLFDGAL-----VESVIMRYPGRVTMCISSQAGCG 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSL--LGDFPGCEDIEGMVIPSVGRKISNIV 183
           + C FC TG + L RNLT  EI+ QV+    L   G+ PG +D E         ++SN+V
Sbjct: 147 MNCPFCATGQEGLTRNLTTAEIVEQVVAGARLLRSGELPGLDDDE----RETPLRVSNVV 202

Query: 184 MMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
            MGMGE L N+     ++         GL  S R +T+ST G VP I ++  E I V LA
Sbjct: 203 FMGMGEALANYRQAIDAIKRLVSPAPEGLGMSARGVTMSTVGLVPAIDKLAAEGIPVTLA 262

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA  ++LRN LVPIN ++ ++  +DA   Y   +   R++ EY ++K IND    A 
Sbjct: 263 LSLHAPDDELRNELVPINTRWSVDEALDAAHRYFEATGR-RVSIEYALIKDINDQGWRAD 321

Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L K L         +N IP NP PG ++  S +     F E ++  G  + +R  RG D
Sbjct: 322 LLAKKLNARGKGWVHVNPIPLNPTPGSKWTASRKGVEQNFVERLRAGGIPTTVRDTRGSD 381

Query: 358 ILAACGQLKSLS 369
           I  ACGQL + +
Sbjct: 382 IDGACGQLAAKT 393


>gi|189500366|ref|YP_001959836.1| radical SAM enzyme, Cfr family [Chlorobium phaeobacteroides BS1]
 gi|254807163|sp|B3EJF5|RLMN_CHLPB RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|189495807|gb|ACE04355.1| radical SAM enzyme, Cfr family [Chlorobium phaeobacteroides BS1]
          Length = 362

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 194/379 (51%), Gaps = 30/379 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K ++    R+EL + +  +G P      R  QI +W++   + DF+ M +IS  +R  L+
Sbjct: 5   KTNIKAYTRQELRDTIAALGEPA----YRADQIHRWLFSDWVTDFEKMKNISASLREELS 60

Query: 66  QHFSIIYPE-----IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           + + I         I +  +S   T K+L+      +     +ETV IP   R T+CVSS
Sbjct: 61  RRYVIPSCSFENEAIEERSVSAPETSKFLVGLHDDEM-----VETVLIPSPDRHTVCVSS 115

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC L C+FC TG     RNL A EI+ QVLL    LGD             S    ++
Sbjct: 116 QVGCPLRCTFCATGYMGFTRNLLASEIVEQVLLVNERLGD------------RSPDNHVT 163

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           N+V MGMGEPL N +NV  ++   ++     S S++RIT+ST G +P I  +    + + 
Sbjct: 164 NMVFMGMGEPLLNLNNVFDAIETLTNQSYNFSLSRKRITISTVGLIPQIGELARSGLSIK 223

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLHA   + R  L+P+ +++ LE L  A   Y  +     +T  Y++++G+ND+ +D
Sbjct: 224 LAISLHAADQEKRTSLIPVAKEHTLEELRHALHEYADMV-KEPVTLVYMLIEGVNDADQD 282

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A+NLI+  +G   KINLI +N     ++     +    F   +  +G    +R  +G  I
Sbjct: 283 AINLIRFAQGFLCKINLIDYNCIVNVKFNPVKAEKRDRFIHTLVNAGVHVTVRKSQGASI 342

Query: 359 LAACGQLKSLSKRIPKVPR 377
            AACGQL +L K+     R
Sbjct: 343 DAACGQL-ALQKKNKTASR 360


>gi|269795650|ref|YP_003315105.1| radical SAM enzyme, Cfr family [Sanguibacter keddieii DSM 10542]
 gi|269097835|gb|ACZ22271.1| radical SAM enzyme, Cfr family [Sanguibacter keddieii DSM 10542]
          Length = 364

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 183/370 (49%), Gaps = 26/370 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-N 65
                +  EE   A+ ++G        R  Q+    +     D Q M+D+    R +L +
Sbjct: 12  RHFADLSPEERVAAVTELG----EKPFRAKQLATHYFSHLTADPQDMTDLPAGSRDVLTD 67

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F  +  ++   +     T K L     +     V++E+V +   SR TLCVSSQ GC 
Sbjct: 68  ALFPPLLTKVRTMEADGGTTVKTLWHLYDQ-----VKVESVLMRYTSRTTLCVSSQAGCG 122

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EI+ QV  A   L D           IP    +++N+V M
Sbjct: 123 MACPFCATGQLGLTRNLSTAEIVEQVRQAAKSLAD---------GEIPGGPTRLNNLVFM 173

Query: 186 GMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N+  V  ++   +A    GL  S R IT+ST G VP + ++ +E I V LA+S
Sbjct: 174 GMGEPLANYKAVIGTVRQAVAPAPDGLGMSARNITVSTVGLVPAMNKLAKEGIPVTLALS 233

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ LVPIN ++ ++ ++DA R Y   +   R++ EY ++K +ND    A  L
Sbjct: 234 LHAPDDELRSDLVPINTRWSVDEVLDAARGYFDATGR-RVSIEYALIKDMNDHAWRADLL 292

Query: 303 IKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            + L  +G     +N IP NP PG  +  S+Q     F   ++  G  + IR  RG DI 
Sbjct: 293 GEKLTARGQGWVHVNPIPLNPTPGSIWTASEQDVEDEFVARLRGHGIPTTIRDTRGSDID 352

Query: 360 AACGQLKSLS 369
            ACGQL +  
Sbjct: 353 GACGQLAAEE 362


>gi|255085148|ref|XP_002505005.1| predicted protein [Micromonas sp. RCC299]
 gi|226520274|gb|ACO66263.1| predicted protein [Micromonas sp. RCC299]
          Length = 375

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 189/374 (50%), Gaps = 39/374 (10%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY-VRGIRDFQGMSDISQEVR-HLLN 65
           +L+GM   EL+    + G+P    + R  Q+   +Y V+  ++   +  + +  R  LL+
Sbjct: 23  NLLGMTLPELKTFAEEAGLP----KFRGKQLRDHLYGVKPAKNIDDLVTLPKAARRQLLD 78

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSSQ 121
              S+    +     S DGT K LLR     +     +ETV IP       R T CVSSQ
Sbjct: 79  AGVSVGRSVVHHVAGSPDGTTKLLLRLHDDRV-----VETVGIPAHEAGHRRLTACVSSQ 133

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C+FC TG     RNL   EI+ QV+      G+                 ++++
Sbjct: 134 VGCPMRCTFCATGKGGFARNLATHEIVDQVVSLEEHFGE-----------------RVTH 176

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240
           IV MGMGEPL N  NV ++    +  +G     R IT+ST G    I R+   ++   LA
Sbjct: 177 IVFMGMGEPLLNVPNVLRAHEALNKEVG--IGSRHITISTVGVRGAIERLARAKLQSTLA 234

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLHA + +LR  L+P  + YP++ L++  + Y  ++  RR+TFEY +L G+NDS + A 
Sbjct: 235 ISLHAPNQELRERLIPSAKAYPMQELLNDAQQYF-IATGRRVTFEYTLLAGVNDSIQQAE 293

Query: 301 NLIKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
            L ++L    + + +N+IP+NP      +    +  I+ F   +++    + IR  RGL+
Sbjct: 294 ELGRLLYKNKLASHVNIIPYNPVDDAPDFKRPGRASILNFRNTLEQMNVPASIRQSRGLE 353

Query: 358 ILAACGQLKSLSKR 371
             AACGQL++  ++
Sbjct: 354 AAAACGQLRNAYQK 367


>gi|284929286|ref|YP_003421808.1| 23S rRNA m(2)A-2503 methyltransferase [cyanobacterium UCYN-A]
 gi|284809730|gb|ADB95427.1| 23S rRNA m(2)A-2503 methyltransferase [cyanobacterium UCYN-A]
          Length = 341

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 191/368 (51%), Gaps = 32/368 (8%)

Query: 6   KES-LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           K+  L+G   EEL   + + G P      R  Q+ +W+Y +GI+  + +S   +  R  +
Sbjct: 4   KQDILLGKSIEELTNWVEERGQPN----YRGKQLHQWLYHKGIKSLEEVSVFPKNWRKEI 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
              + +    I    ++ D TRK+LL      I     IETV IP   R T+CVSSQVGC
Sbjct: 60  AD-YPVGRSSINQLIVAPDKTRKYLLNLQDGLI-----IETVGIPTSKRLTVCVSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG     RNLT  EI+ Q+L  +                     +++S++V 
Sbjct: 114 PMKCDFCATGKGDFKRNLTCAEIIDQILTVQE-----------------DFQQRVSHVVF 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
           MGMGEPL N   + K++ I +    +   +R +T+ST G    I      ++ +  A+SL
Sbjct: 157 MGMGEPLLNIKEIIKAIKIINQD--IGIGQRSLTISTVGIPEKIIEFANHKLQITFAVSL 214

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +  LR  L+P ++ Y L  LI+ C+ Y  ++   R+TFEY++L+ +NDS   A+ L 
Sbjct: 215 HASNQILREKLIPTSKFYTLSSLINDCKKYVEITKR-RLTFEYILLEEVNDSLEQAVELA 273

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           K+LKG    +NLIP+NP    +Y  S  + I  F   +++ G ++ IR  RGL+  AACG
Sbjct: 274 KLLKGFQNHVNLIPYNPIEEVKYKRSSPQRIKAFCYQLEKYGITTSIRYSRGLETHAACG 333

Query: 364 QLKSLSKR 371
           QL++   +
Sbjct: 334 QLRASYHK 341


>gi|294786945|ref|ZP_06752199.1| radical SAM enzyme, Cfr family [Parascardovia denticolens F0305]
 gi|315226582|ref|ZP_07868370.1| cfr family radical SAM enzyme [Parascardovia denticolens DSM 10105]
 gi|294485778|gb|EFG33412.1| radical SAM enzyme, Cfr family [Parascardovia denticolens F0305]
 gi|315120714|gb|EFT83846.1| cfr family radical SAM enzyme [Parascardovia denticolens DSM 10105]
          Length = 404

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 123/381 (32%), Positives = 185/381 (48%), Gaps = 28/381 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L+ M +++  + +  +G P      R  Q+ +  +     D    SD        + + 
Sbjct: 38  HLVDMDQDQRVDLMKDLGYPS----FRLKQLGQHYFAHDDVDVASYSDFPSAKAQEVKEA 93

Query: 68  FSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           F       + E+ +  GT  K L +           IE+V +   SR TLC+SSQVGC +
Sbjct: 94  FFPTLITPLLEQEADHGTTIKTLWKLFD-----GSRIESVLMKYPSRTTLCISSQVGCGM 148

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L RN++A EIL QV  A +   D    E            ++SN+V MG
Sbjct: 149 ACPFCATGQLGLTRNMSAGEILEQVRYASAQARDGRLGEPT----------RLSNVVFMG 198

Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISL 243
           MGE L N+  + K++   S     G   S R IT+ST G VP I R+ GE I V LA+SL
Sbjct: 199 MGEALGNYRAMMKAIRRISAMPPEGFGISARNITISTVGIVPGIRRLMGEGIPVRLAVSL 258

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  ++LR+ LVP+N+++    ++DA   Y   ++  R++ EY ++KGIND    A  L 
Sbjct: 259 HAPDDELRDELVPMNKRFNTTQVLDAAHDYYLATHR-RVSIEYALMKGINDQAVHARLLA 317

Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           K L       A +N IP NP  G ++  S  +D   F + +  +G ++ +R  RG DI  
Sbjct: 318 KRLNRYGDNWAHVNPIPLNPIEGSKWTASKPEDEARFLDILHEAGITATLRDTRGSDING 377

Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381
           ACGQL +    + +   +  Q
Sbjct: 378 ACGQLAAKEL-VTRAEEELAQ 397


>gi|256824969|ref|YP_003148929.1| ribosomal RNA large subunit methyltransferase N [Kytococcus
           sedentarius DSM 20547]
 gi|256688362|gb|ACV06164.1| radical SAM enzyme, Cfr family [Kytococcus sedentarius DSM 20547]
          Length = 426

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 115/402 (28%), Positives = 181/402 (45%), Gaps = 50/402 (12%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L  +     ++A+   G P      R +Q+ K  + R   +   M+D+ +  R  + +
Sbjct: 29  QHLADLDPAGRKQAVTDAGWPA----FRANQLSKHYFERYTDEPAAMTDLPKAGREEMVR 84

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                    V    + DG T K L R     +     +E+V +   +R TLC+SSQ GC 
Sbjct: 85  GLMPQLLTPVSVMRADDGATVKTLWRLHDGAL-----VESVLMRYPNRVTLCLSSQAGCG 139

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC--------------------- 164
           + C FC TG Q L RNL+  EI+ Q++ A  +L D                         
Sbjct: 140 MNCPFCATGQQGLTRNLSTAEIVGQLVAANRMLNDPEAPGLAPPPALAEGQVELGENDAD 199

Query: 165 ------------EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM--GL 210
                         ++  +      ++ N+V MGMGE L N+     ++    D    GL
Sbjct: 200 PSLDAGADEVEDASLDTPLAAGGPHRVHNVVFMGMGEALANYRKAVDAVRRMVDPAPAGL 259

Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S R IT+ST G VP I +   E +   LA+SLHA  ++LR+ LVPIN+++ ++  +DA
Sbjct: 260 GMSARGITMSTVGLVPAIDKFAAEGVAATLALSLHAPDDELRDELVPINKRWKVDEALDA 319

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIP-AKINLIPFNPWPGCEY 326
              Y   +  RR++ EY +++ +ND    A  L + L  +G     +N IP NP PG ++
Sbjct: 320 AYRYFE-TTGRRVSIEYALIRDMNDQAWRADLLAEKLNARGRGWVHVNPIPLNPTPGSKW 378

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
             S       F E ++  G  + +R  RG DI  ACGQL + 
Sbjct: 379 TASRPGVEQQFVERLRAGGIPTTVRDTRGSDIDGACGQLAAA 420


>gi|256832241|ref|YP_003160968.1| radical SAM enzyme, Cfr family [Jonesia denitrificans DSM 20603]
 gi|256685772|gb|ACV08665.1| radical SAM enzyme, Cfr family [Jonesia denitrificans DSM 20603]
          Length = 376

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 180/374 (48%), Gaps = 32/374 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
                M  +E  + + ++G    H   R  Q+    +     +   M+D+  + +  L  
Sbjct: 25  RHFADMTPQERRDVVTELG----HQPFRAKQLETHYFSHLTDNADEMTDLPAQAKSEL-- 78

Query: 67  HFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
               + P +V +  +   DG  T K L R         ++IE+V +   +R TLCVSSQ 
Sbjct: 79  -VGALMPPLVSKIRTLEADGGATVKTLWRLFD-----GIKIESVLMRYPTRSTLCVSSQA 132

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV  A            +    IP     ++N+
Sbjct: 133 GCGMACPFCATGQMGLTRNLSTAEIVEQVRQAAR---------ALAQGEIPGGATHLNNL 183

Query: 183 VMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239
           V MGMGEPL N+  +  ++   +A    G   S R IT+ST G VP I ++ +E + + L
Sbjct: 184 VFMGMGEPLANYKALMGAVRQFVAPSPQGFGLSARNITVSTVGLVPAINKLAKEGLPLTL 243

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ LVPIN ++ ++  +DA   Y   +   R++ EY ++K +ND    A
Sbjct: 244 ALSLHAPDDELRSQLVPINTRWTVDEALDAAYGYYDATGR-RVSIEYALIKDMNDHAWRA 302

Query: 300 LNLIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             L + L  +G     +N IP NP PG  +  SD+     F   ++     + IR  RG 
Sbjct: 303 DLLGEKLNARGRGWVHVNPIPLNPTPGSIWTASDRDVEQEFVRRLRSHNIPTTIRDTRGS 362

Query: 357 DILAACGQLKSLSK 370
           DI  ACGQL +  +
Sbjct: 363 DIDGACGQLAAEDE 376


>gi|237785746|ref|YP_002906451.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758658|gb|ACR17908.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 394

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 189/370 (51%), Gaps = 32/370 (8%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
            +  +E ++A+  +G+P      R +Q+ +  Y R     + M+D+    R  + +    
Sbjct: 45  DLTVDEQKQAVKDLGLPA----FRANQLARHYYGRFEASPETMTDLPAAAREPVQKA--- 97

Query: 71  IYPEIVDEK--ISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           ++PE++ E   ISCD   TRK L +     +     +E+V +    R TLC+SSQ GC +
Sbjct: 98  LFPELMTEVRNISCDQGMTRKTLWKLHDGTL-----LESVLMRYPGRATLCISSQAGCGM 152

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L RNL+  EI+ QV  A + +             +     ++SN+V MG
Sbjct: 153 ACPFCATGQGGLHRNLSTGEIVDQVRAAAAAM---------SRGDVAGGKGRLSNVVFMG 203

Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGEPL N+  V  ++   +D    G   S+R +T+S+ G  P I R  +E + V LA+SL
Sbjct: 204 MGEPLANYKRVVSAVRQITDPSPRGFGLSQRNVTVSSVGLAPAIRRFADEGLSVTLAVSL 263

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H   ++LR+ LVP+N ++ +E ++DA  +Y   S   R++ EY +++ +ND    A  L 
Sbjct: 264 HTPDDELRDSLVPVNNRWSVEEVLDAAAYYADRSGR-RVSIEYALIRDVNDQGWRADLLG 322

Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           K LK        +N+IP NP PG  +  S ++    F   +K  G    +R  RG +I A
Sbjct: 323 KKLKKALHSKVHVNVIPLNPTPGSIWDASTKQQQEEFVRRVKTQGVECTVRDTRGQEIAA 382

Query: 361 ACGQLKSLSK 370
           ACGQL +  K
Sbjct: 383 ACGQLAAEEK 392


>gi|303273710|ref|XP_003056208.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462292|gb|EEH59584.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 358

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 185/378 (48%), Gaps = 39/378 (10%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG-IRDFQGMSDISQEVRH- 62
           K+ +L+G+   EL+     IG+P      R  Q+   IY    +R    +  + +  R  
Sbjct: 4   KRFNLLGLTLSELKRFSADIGLPA----YRGKQLRDHIYAGPPVRYIDDLVSLPKATRAA 59

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTLCV 118
           LL     I    +    +  DG  K LLR     +     IETV IP     K R T CV
Sbjct: 60  LLAADVHIGRSSVHHVVVDSDGVVKLLLRLGDDKV-----IETVGIPSLERGKDRLTACV 114

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC + C+FC TG     RNL   EI+ QVL      G                 ++
Sbjct: 115 SSQVGCPMRCTFCATGKGGFTRNLAPHEIVDQVLSLEEHFG-----------------KR 157

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGV 237
           ++N+V MGMGEPL N  NV ++ +  +    +    R IT+ST G   ++  +    +  
Sbjct: 158 VTNVVFMGMGEPLLNTPNVLRAYTALNTE--IGIGARHITISTVGVRGSLQMLAGARLQS 215

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA +  LR +L+P  + YPL  L++ C  Y  ++  RR+TFEY +L GINDS  
Sbjct: 216 TLAVSLHAPNQSLREVLIPSAKSYPLGELLNDCEQYF-IATGRRVTFEYTLLAGINDSSE 274

Query: 298 DALNLIKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
            A+ L ++L  K + + +NLIP+NP      +   D+  +  F   ++     + IR  R
Sbjct: 275 QAVELAELLHKKKLASHVNLIPYNPVHDAPDFARPDRATVFKFKNILEEMQVPASIRQSR 334

Query: 355 GLDILAACGQLKSLSKRI 372
           GL+  AACGQL+S  ++I
Sbjct: 335 GLEAAAACGQLRSSFQKI 352


>gi|319948052|ref|ZP_08022226.1| ribosomal RNA large subunit methyltransferase N [Dietzia cinnamea
           P4]
 gi|319438291|gb|EFV93237.1| ribosomal RNA large subunit methyltransferase N [Dietzia cinnamea
           P4]
          Length = 369

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 187/373 (50%), Gaps = 28/373 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           L       +  +    A+  +G+P      R  Q+    + R   D + M+D+  ++R  
Sbjct: 16  LPPRHFADLDSDGRAVAMGDLGVPS----FRGKQLANQYFGRLEADPREMTDLPADLRDR 71

Query: 64  LNQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           + Q             +S D   TRK L +     +     +E+V +    R T+C+SSQ
Sbjct: 72  VGQEL-FPPLTTSLRHVSADEGTTRKTLWKLHDGSL-----VESVLMRYPDRATVCISSQ 125

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   L RNL+  EIL QV +A   L D           IP    ++SN
Sbjct: 126 AGCGMACPFCATGQGGLQRNLSTAEILEQVRVAARALRD---------GEIPGGPGRLSN 176

Query: 182 IVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           +V MGMGEPL N+  V  ++   I+    G   S+R +T+ST G VP I ++ EE + V 
Sbjct: 177 VVFMGMGEPLANYKRVLAAVRGIISPPPSGFGLSQRSVTVSTVGVVPAIHKLAEEGLQVT 236

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLH   ++LR+ LVP+N ++P+  ++DA RHY   +   R++ EY +++ +ND    
Sbjct: 237 LAVSLHTPDDELRDTLVPVNNRWPVTEVMDAARHYADATGR-RVSIEYALIRDVNDQVWR 295

Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
              L ++L    G  A +NLIP NP PG E+  S +     F   ++ +G S  +R  RG
Sbjct: 296 GEMLGRLLAQRLGPMAHVNLIPLNPTPGSEWDASPRHQQDAFVAAVRAAGVSCTVRDTRG 355

Query: 356 LDILAACGQLKSL 368
            DI AACGQL + 
Sbjct: 356 SDIDAACGQLAAE 368


>gi|269219614|ref|ZP_06163468.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210856|gb|EEZ77196.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 404

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 119/369 (32%), Positives = 173/369 (46%), Gaps = 27/369 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           E L  +   E ++ + K G P      R  Q+ +  +     D + M+D+    R  L  
Sbjct: 24  EHLADLDVAERKDRVAKAGFPA----FRADQLSRHYFEHFDVDPERMTDLPARGREELVS 79

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            F       V +  +  G T K L R     +     +ETV +    R TLC+SSQ GC 
Sbjct: 80  TFLPPLLTKVRDLTADRGLTIKSLWRMFDGAM-----VETVLMKYPDRATLCISSQAGCG 134

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+A EI+ QV                          +++N+V M
Sbjct: 135 MACPFCATGQGGLTRNLSAGEIVEQV----------RCGMLAAARGDLGEPCRLTNVVFM 184

Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           GMGEPL N+  V K+L         G   S R +T+ST G  P I ++ E+ + V LAIS
Sbjct: 185 GMGEPLANWKQVLKALRRIIEPSPAGFGLSARNVTVSTVGMAPLIEKLAEQGMPVTLAIS 244

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++LR+ L+PIN ++ +  L+DA R Y   +   R++ EY +++ +ND    A  L
Sbjct: 245 LHAPDDELRDPLIPINSRFNVGRLLDAARSYFAKTGR-RVSVEYALIRDMNDHKWRAQLL 303

Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
              L       A +N IP NP PG  +  S  +   TF + +  +G  + IR  RG DI 
Sbjct: 304 ADELNRRGRGWAHVNPIPLNPTPGSIWTASTPEAQNTFVQTLLDAGIPTTIRDTRGSDID 363

Query: 360 AACGQLKSL 368
            ACGQL + 
Sbjct: 364 GACGQLAAE 372


>gi|317506353|ref|ZP_07964165.1| cfr family radical SAM enzyme [Segniliparus rugosus ATCC BAA-974]
 gi|316255363|gb|EFV14621.1| cfr family radical SAM enzyme [Segniliparus rugosus ATCC BAA-974]
          Length = 369

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 119/363 (32%), Positives = 177/363 (48%), Gaps = 28/363 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +    L  +  EEL EA+  +G        R  Q+ +  Y R   +   M+DI    R  
Sbjct: 15  MPPRHLADLAAEELREAVAGLG----EKPFRAQQLARHYYSRLTAEPGVMTDIPAASRGK 70

Query: 64  LNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
           L     +         + CDG  T K L R     +     +E+V +    R TLCVSSQ
Sbjct: 71  LAD-ALLPSLITPARTMGCDGGETVKTLWRLHDGAL-----VESVLMGYADRVTLCVSSQ 124

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC + C FC TG   L RNL+  EI+ QV LA +   D           +    R +SN
Sbjct: 125 AGCGMACPFCATGQGGLTRNLSTAEIVEQVRLAAAAARD---------GKVAGGPRNLSN 175

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238
           +V MGMGEPL N++ V  ++   +     GL  S+R + +ST G VP I R+  E + V 
Sbjct: 176 VVFMGMGEPLANYNRVLAAVRRITSPAPDGLGLSQRSVVVSTVGLVPAIKRLAGEGLSVT 235

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA  ++LR+ LVP+N ++P+  ++ A + Y   +   R++ EY +++ +ND P  
Sbjct: 236 LAVSLHAPDDELRDTLVPVNTRWPVAEVLAAAQGYARQTGR-RVSVEYALIREVNDQPWR 294

Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           A  L  +L    G  A +NLIP NP PG ++  S  +    F   ++  G S  +R  RG
Sbjct: 295 ADLLGGLLHQALGPLAHVNLIPLNPTPGSKWDASSPEAQREFVRRVRAKGVSCTVRDTRG 354

Query: 356 LDI 358
            +I
Sbjct: 355 QEI 357


>gi|184200284|ref|YP_001854491.1| hypothetical protein KRH_06380 [Kocuria rhizophila DC2201]
 gi|205829780|sp|B2GJ15|RLMN_KOCRD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|183580514|dbj|BAG28985.1| putative rRNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 382

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 177/369 (47%), Gaps = 23/369 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            L        +E L   G P      R SQ+ K  + R   D   M+D+    R  L   
Sbjct: 30  HLADFDMAGRKEFLRAAGYPA----FRASQLSKHYFERFEADPAAMTDLPAGQREELVAK 85

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
                 + V +  + +G T K + R     +     +E+V +    R T+C+SSQ GC +
Sbjct: 86  AMPPLLKTVRQLRADEGMTVKSVHRLFDNAM-----VESVLMRYDKRVTMCISSQAGCGM 140

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L RNL+A EI+ QV+     L D    +  E        +++SNIV MG
Sbjct: 141 NCPFCATGQSGLTRNLSAAEIVDQVVQGVRALRDGAVGDPEEA------PQRVSNIVFMG 194

Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISL 243
           MGE L N+     ++    D    GL  S R +T+ST G VP I +   E++ + LA+SL
Sbjct: 195 MGEALANYKATMGAVHRIIDPSPEGLGISARGLTMSTVGLVPGIRKFTLEKLPITLALSL 254

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  ++LR+ L+PIN ++ ++  +DA R Y   +   R++ EY +++ IND    A  L 
Sbjct: 255 HAPDDELRDELIPINTRWKVDEALDAARDYYDATGR-RVSIEYALIRDINDQGWRADLLG 313

Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           + L    G    +N IP NP PG ++  S       F E ++  G  + +R  RG DI  
Sbjct: 314 EKLNKRGGGWVHVNPIPLNPTPGSKWTASRPGVEQNFVERLRAHGIPTTVRDTRGSDIDG 373

Query: 361 ACGQLKSLS 369
           ACGQL + +
Sbjct: 374 ACGQLATEA 382


>gi|108798974|ref|YP_639171.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium sp.
           MCS]
 gi|119868089|ref|YP_938041.1| radical SAM protein [Mycobacterium sp. KMS]
 gi|126434574|ref|YP_001070265.1| radical SAM protein [Mycobacterium sp. JLS]
 gi|122977121|sp|Q1BAG9|RLMN_MYCSS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829816|sp|A3PXZ7|RLMN_MYCSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829817|sp|A1UEJ3|RLMN_MYCSK RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|108769393|gb|ABG08115.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. MCS]
 gi|119694178|gb|ABL91251.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. KMS]
 gi|126234374|gb|ABN97774.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. JLS]
          Length = 374

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 124/353 (35%), Positives = 180/353 (50%), Gaps = 21/353 (5%)

Query: 23  KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC 82
           ++G+P      R  Q+    Y R   D Q M+D+   VR  + +         V E  + 
Sbjct: 35  ELGLPA----FRAKQLATQYYGRLTADPQQMTDLPAAVREQVAEALFPDLLTAVREIETD 90

Query: 83  DG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
            G TRK L R            E+V +    R T+C+SSQ GC + C FC TG   L RN
Sbjct: 91  AGETRKVLWR-----AVDGTTFESVLMRYSDRNTVCISSQAGCGMACPFCATGQGGLQRN 145

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L+  EIL QV  A   L D  G    EG+   + G ++SNIV MGMGEPL N++ V  ++
Sbjct: 146 LSTAEILEQVRAAAVELRDRDG----EGIAPAARGGRLSNIVFMGMGEPLANYNRVIAAV 201

Query: 202 SIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPIN 258
                    G   S R +T+ST G  P I ++ +E + V LA+SLHA  ++LR+ LVP+N
Sbjct: 202 RRIVAPPPDGFGISARSVTVSTVGLAPAIRKLADERLNVTLALSLHAPDDELRDTLVPVN 261

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINL 315
            ++ +   +DA R+Y  ++   R++ EY +++ +ND P  A  L K L G       +N+
Sbjct: 262 NRWKVSEALDAARYYADVTGR-RVSIEYALIRDVNDQPWRADLLGKRLHGALGPLVHVNV 320

Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           IP NP PG E+  S +     F   ++  G S  +R  RG +I AACGQL + 
Sbjct: 321 IPLNPTPGSEWDASPKPAEREFVRRVRERGVSCTVRDTRGREIAAACGQLAAE 373


>gi|194333982|ref|YP_002015842.1| radical SAM enzyme, Cfr family [Prosthecochloris aestuarii DSM 271]
 gi|254807193|sp|B4S808|RLMN_PROA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|194311800|gb|ACF46195.1| radical SAM enzyme, Cfr family [Prosthecochloris aestuarii DSM 271]
          Length = 359

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 198/377 (52%), Gaps = 31/377 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+++    R+ELEE +  IG P    R R +Q+ +W+Y     DF  M+ IS+ +R  L+
Sbjct: 4   KQNIKRYSRKELEELMQSIGEP----RFRAAQLHRWLYSDRASDFHEMTTISKSLRETLD 59

Query: 66  QHFSIIYPEIVDEK----ISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           + + +    +   +     S D  TRK+L++   +       +ETV IP + R T+CVS+
Sbjct: 60  RKYFLPQCSMSSTQCVEDSSADSTTRKFLVQLHDQ-----EAVETVLIPAEGRNTVCVST 114

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC L CSFC TG     RNL A EI  QV L +  L                    ++
Sbjct: 115 QVGCPLHCSFCATGYMGFTRNLNAAEIAEQVFLVQDYLDAIGCGA-------------VT 161

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           NIV MGMGEPL   + V +S+ I SD+   L  S+++ITLST G +P I  +    +   
Sbjct: 162 NIVYMGMGEPLLALEEVIESVGILSDTTYRLHISQKKITLSTVGLLPEIGMLARSGLTTN 221

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLH+   + R  L+P  R YPL+ L      Y   +  + +T  Y++LK IND+  D
Sbjct: 222 LAISLHSADQETRASLMPSARDYPLKELRKTLIQYTSET-GQPVTLVYMLLKEINDTQED 280

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           AL L+++ +    KINLI +NP    ++  + ++    F   +  +G +  +R   G  I
Sbjct: 281 ALKLVRLARSFLCKINLIDYNPIVNIKFDSAGEQRKNIFIRTLVDAGLNVTVRKSHGSSI 340

Query: 359 LAACGQLKSLSKRIPKV 375
            AACGQL +++K++P+ 
Sbjct: 341 NAACGQL-AINKKLPES 356


>gi|329766407|ref|ZP_08257953.1| radical SAM protein [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137176|gb|EGG41466.1| radical SAM protein [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 351

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 119/371 (32%), Positives = 194/371 (52%), Gaps = 35/371 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + L  ++ EE+E+ ++ +G P    R R  QI   +Y +  ++   +  +   +R  L +
Sbjct: 2   KDLYRLLPEEMEQMVIDMGQP----RYRADQILYPLYYKFPKNISEIRQLPTMMRDKLAE 57

Query: 67  H-FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKS-------RGTLC 117
             + I     V   +S DG T K LL      +     +ETV I           R T+C
Sbjct: 58  EGYVIGSATEVHRVVSEDGDTTKLLL-----NLADGTPVETVLIQYPPSKINGHPRSTIC 112

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           VS+QVGC++ C+FC TG     RN+ AEEI+ QV+    L              +   G+
Sbjct: 113 VSTQVGCAMGCTFCATGQMGFERNIKAEEIVAQVIHFAEL--------------LEKRGQ 158

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
            ++N+V MGMGEPL N+D   +++ + +   G    +R IT+ST G +  I ++ EE + 
Sbjct: 159 HVTNLVFMGMGEPLVNYDETIRAVRLLTHPRGFGIGQRNITISTIGIISGIDKLAEEDLQ 218

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + LAISLHA ++ LR  LVP    + ++ LI A + Y   +   R+TFEY +++G+NDSP
Sbjct: 219 IGLAISLHAPNDKLRQKLVPTAGPHSVDDLIAAGKRYFKKTGR-RVTFEYALIEGVNDSP 277

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L  +L G  + +NLIP NP  G ++    ++ ++ F   +  +G +  +R  +G 
Sbjct: 278 EIAKELSLLLDGNGSHVNLIPLNPTTG-DFHRPSKRSVLEFERILNIAGVNCTVRVEKGT 336

Query: 357 DILAACGQLKS 367
           +I AACGQL++
Sbjct: 337 EISAACGQLRT 347


>gi|87301290|ref|ZP_01084131.1| hypothetical protein WH5701_15431 [Synechococcus sp. WH 5701]
 gi|87284258|gb|EAQ76211.1| hypothetical protein WH5701_15431 [Synechococcus sp. WH 5701]
          Length = 362

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 118/364 (32%), Positives = 174/364 (47%), Gaps = 42/364 (11%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF------SIIY 72
              +  G P      R  Q+  WIY +G R    +S + +  R  L          ++  
Sbjct: 23  AWAVSQGQPA----FRGRQLHDWIYAKGARRLADISVLPKAWRESLTAEADPAGSDALGR 78

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
              +   ++ DGT K LL          + +ETV IP + R T+CVSSQVGC + C FC 
Sbjct: 79  SRELQRSVASDGTTKLLL-----GTADGLSLETVGIPSRDRLTVCVSSQVGCPMACRFCA 133

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           TG   L R+L   EI+ QVL  R ++                  R+ S++V MGMGEPL 
Sbjct: 134 TGKGGLQRSLAVHEIVDQVLCVREVM-----------------ERRPSHVVFMGMGEPLL 176

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLAISLHA 245
             D+V  ++        L  ++R+IT+ST G    +  + E            LA+SLHA
Sbjct: 177 TIDSVLGAIHCLCTD--LGMAQRQITVSTVGVPSTLPSLAELALERLGRAQFTLAVSLHA 234

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
               LR  L+P    YPLE L+D CR Y  ++   R++FEY++L G+ND PR A  L  +
Sbjct: 235 PDQGLREQLIPTAHAYPLEALLDDCRRYVEITGR-RVSFEYILLGGLNDHPRQAAALAAL 293

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L+G  + +NLIP+NP    ++     + +  F   +     +  +R  RGLD  AACGQL
Sbjct: 294 LRGFQSHVNLIPYNPIEEEDFQRPSPERVEAFRRALLERHVAVSVRASRGLDEDAACGQL 353

Query: 366 KSLS 369
           +  +
Sbjct: 354 RRRA 357


>gi|145219757|ref|YP_001130466.1| radical SAM protein [Prosthecochloris vibrioformis DSM 265]
 gi|205829809|sp|A4SEQ5|RLMN_PROVI RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|145205921|gb|ABP36964.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 373

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 184/377 (48%), Gaps = 32/377 (8%)

Query: 2   NFLKK--ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
           + + K  +++  +  ++L   L ++  P      R  QI +W++      F+ M+ +S+ 
Sbjct: 11  HTMAKTLQNITDLTLQQLTGRLAEMKEPAW----RAKQIHEWLFSHRAESFEEMTTLSKA 66

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDG-----TRKWLLRFPARCIGGPVEIETVYIPEKSRG 114
           +R  L + F+I  PE+     S +G     T K LLR P   +     IETV IP   R 
Sbjct: 67  LRKALEETFAITPPEVEQHDNSTEGACPGPTEKLLLRLPDGAM-----IETVLIPGPGRL 121

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           T C+SSQ GC+L CSFC TG+    RNLT  EI  Q     S+            +    
Sbjct: 122 TACLSSQAGCALQCSFCATGSLGFKRNLTPGEITGQANALNSM------------LAASG 169

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIA-SDSMGLSFSKRRITLSTSGFVPNIARVGE 233
             +KI+NIV MGMGEPL N  NV  ++    +     S S+R+IT+ST G +P IA++  
Sbjct: 170 REQKITNIVFMGMGEPLLNTLNVFDAVETLSTRGYTSSISQRKITISTVGIIPEIAKLAT 229

Query: 234 E-IGVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
             +   LA+SLH+   + R  L+P   R+YPL+ L     HY   +    +T  Y++L+G
Sbjct: 230 SGMKTKLAVSLHSAFQEKRESLMPLAARRYPLDELQPVLAHYAKNT-GEPVTLVYMLLEG 288

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
           +ND+  DA  LI+       KINLI +N      +     +    F + +  +G    +R
Sbjct: 289 VNDTLEDARQLIRFASRFFCKINLIDYNSIVNIPFQSVCSETRDRFRDRLLEAGLQVTLR 348

Query: 352 TPRGLDILAACGQLKSL 368
              G  I AACGQL + 
Sbjct: 349 KSYGTSIHAACGQLAAK 365


>gi|312898699|ref|ZP_07758089.1| radical SAM enzyme, Cfr family [Megasphaera micronuciformis F0359]
 gi|310620618|gb|EFQ04188.1| radical SAM enzyme, Cfr family [Megasphaera micronuciformis F0359]
          Length = 341

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 110/361 (30%), Positives = 182/361 (50%), Gaps = 29/361 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
            +  + + +L++ L++ GI     + R  QI+ +IY   I  +  M  + ++ R +L   
Sbjct: 3   DIFSITKGQLQDILVEAGI----KKFRADQIFHYIYKENIWSWNEMVLLPKKDREILKGL 58

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I  PE+ D ++S D  T K LLR           +ETV +      ++C+SSQVGC++
Sbjct: 59  LPIYIPEVADRQVSEDKETVKLLLRLQD-----GQTVETVLMKHDYGNSVCLSSQVGCAV 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC +     VRNLT  E+  Q++  R                   V  ++ ++V+MG
Sbjct: 114 NCAFCASAKNGFVRNLTIGEMTAQLMAFRKY-----------------VTSELHSVVLMG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N+DNV   + +  +   L    R ITLSTSG VP + R+ EE I + LA+SLHA
Sbjct: 157 TGEPLLNYDNVLAFIRLIHEKDTLYLGYRNITLSTSGIVPAVYRLAEEGIPLNLAVSLHA 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++ +R  ++PI  ++  + ++ A + Y   +   ++TFEY+++K +N S   A  L ++
Sbjct: 217 PNDRIRKKIMPIAERFDFDSVVQAAQTYFEKTGR-KVTFEYILIKDVNISDACASQLAQL 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                  +NLIP N             +   F   +KR G ++ +R   G +I AACGQL
Sbjct: 276 FSHKNVLLNLIPINDNYDVGLYRPSATESERFLTYLKRKGVNATLRREMGSNIQAACGQL 335

Query: 366 K 366
           +
Sbjct: 336 R 336


>gi|117928743|ref|YP_873294.1| radical SAM protein [Acidothermus cellulolyticus 11B]
 gi|205829702|sp|A0LV48|RLMN_ACIC1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|117649206|gb|ABK53308.1| 23S rRNA m(2)A-2503 methyltransferase [Acidothermus cellulolyticus
           11B]
          Length = 430

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 121/392 (30%), Positives = 181/392 (46%), Gaps = 47/392 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L      E    + ++G P      R  QI    + R   +   M+D+    R  L  
Sbjct: 36  RHLADFSLAERRRWVAELGEPS----FRAVQISAHYFGRLTENPDEMTDLPASSRRELVG 91

Query: 67  HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEK-------------- 111
                    V E    +G TRK L R           +E+V +                 
Sbjct: 92  VLLPPLLRPVRELACDNGLTRKILWRLSD-----GAYVESVLMRYPPRHSRHAALGAEAD 146

Query: 112 -------SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164
                   R TLCVSSQ GC + C FC TG   LVRNL+A EI+ QV +A          
Sbjct: 147 ADGGSRHGRVTLCVSSQAGCGMGCPFCATGQAGLVRNLSAAEIVAQVAVAAR-------- 198

Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTS 222
             +    +     ++SN+V MGMGEPL N+ +V  ++   ++    GL  S+R +T+ST 
Sbjct: 199 -TVARGEMAGGPGRLSNVVFMGMGEPLANYRSVVDAVRRITEPPPEGLGISQRSVTVSTV 257

Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           G VP I R+  E + V LA+SLHA  ++LRN+LVPINR++P+  ++ A   Y  ++   R
Sbjct: 258 GLVPAIERLATEGLAVTLAVSLHAPDDELRNVLVPINRRWPVRDVLGAAARYAEVTKR-R 316

Query: 282 ITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFS 338
           ++ EY +++ +ND P  A  L   +K   G    +NLIP NP PG  +  S  +    F 
Sbjct: 317 VSVEYALIRDVNDQPWRADALAAQVKEFLGRLGHVNLIPLNPTPGSPWTASTPRAQAEFV 376

Query: 339 ECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
             +  +G +  +R  RG ++  ACGQL +  +
Sbjct: 377 RRLAAAGVTVTVRDTRGREVNGACGQLAATVE 408


>gi|307104499|gb|EFN52752.1| hypothetical protein CHLNCDRAFT_36696 [Chlorella variabilis]
          Length = 336

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 119/361 (32%), Positives = 182/361 (50%), Gaps = 41/361 (11%)

Query: 21  LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSIIYPEIVDEK 79
           +  +G P      R  Q+       G R    ++ +S+++R  L +         +    
Sbjct: 1   MASMGQPT----YRAKQLRDA----GARSVHDVTTLSKDLRAQLAERGVRTGRSVLHHSV 52

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCSFCYTGT 135
            S DGTRK+LL+     +     +E V IP    ++ R T+CVSSQVGC + C+FC TG 
Sbjct: 53  ASPDGTRKFLLQLADGRV-----VEAVGIPADGGDRRRLTVCVSSQVGCPMRCTFCATGK 107

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
               RNL   EI+ QVL  +   G                  ++SNIV MGMGEPL N  
Sbjct: 108 GGFARNLLPHEIVDQVLTVQEEFGQ-----------------RVSNIVFMGMGEPLLNLP 150

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNIL 254
           +V ++  I +  +G+    R IT+ST G    I R+   ++   LA+S+HA S  LR  +
Sbjct: 151 SVLRAHEILNKDVGVG--ARHITISTVGVPNAIRRMARLQLQSTLAVSIHAPSQALRETI 208

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAK 312
           VP  R YPL+ L+  C+ Y  LS   R+TFEY +L G+ND    A  L  +L+   + + 
Sbjct: 209 VPSARAYPLDALMADCQEYFRLSGR-RVTFEYTLLAGVNDGVGQAEELAALLRRHDLRSH 267

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
           +NLIP+NP    E+    ++ +  F+  +++ G    +R  RGL+  AACGQL++  ++ 
Sbjct: 268 VNLIPWNPVDDSEFQRPTRRAVQAFAAALEQRGIPVSVRHTRGLEAAAACGQLRNQHQKT 327

Query: 373 P 373
           P
Sbjct: 328 P 328


>gi|15842421|ref|NP_337458.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis CDC1551]
 gi|31794056|ref|NP_856549.1| hypothetical protein Mb2904c [Mycobacterium bovis AF2122/97]
 gi|121638761|ref|YP_978985.1| hypothetical protein BCG_2901c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148824069|ref|YP_001288823.1| hypothetical protein TBFG_12894 [Mycobacterium tuberculosis F11]
 gi|215404854|ref|ZP_03417035.1| hypothetical protein Mtub0_14428 [Mycobacterium tuberculosis
           02_1987]
 gi|215412721|ref|ZP_03421433.1| hypothetical protein Mtub9_15195 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215447142|ref|ZP_03433894.1| hypothetical protein MtubT_14832 [Mycobacterium tuberculosis T85]
 gi|218754632|ref|ZP_03533428.1| hypothetical protein MtubG1_14859 [Mycobacterium tuberculosis GM
           1503]
 gi|224991253|ref|YP_002645942.1| hypothetical protein JTY_2896 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798032|ref|YP_003031033.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis KZN 1435]
 gi|254232975|ref|ZP_04926302.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254365521|ref|ZP_04981566.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551949|ref|ZP_05142396.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187898|ref|ZP_05765372.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis CPHL_A]
 gi|260206195|ref|ZP_05773686.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis K85]
 gi|289448546|ref|ZP_06438290.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis CPHL_A]
 gi|289553331|ref|ZP_06442541.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289575585|ref|ZP_06455812.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis K85]
 gi|289746679|ref|ZP_06506057.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis 02_1987]
 gi|289763057|ref|ZP_06522435.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294994027|ref|ZP_06799718.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis 210]
 gi|297635496|ref|ZP_06953276.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732495|ref|ZP_06961613.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis KZN R506]
 gi|298526349|ref|ZP_07013758.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306781073|ref|ZP_07419410.1| hypothetical protein TMBG_03023 [Mycobacterium tuberculosis
           SUMu002]
 gi|306785712|ref|ZP_07424034.1| hypothetical protein TMCG_02130 [Mycobacterium tuberculosis
           SUMu003]
 gi|306789752|ref|ZP_07428074.1| hypothetical protein TMDG_00071 [Mycobacterium tuberculosis
           SUMu004]
 gi|306794566|ref|ZP_07432868.1| hypothetical protein TMEG_02147 [Mycobacterium tuberculosis
           SUMu005]
 gi|306798807|ref|ZP_07437109.1| hypothetical protein TMFG_00076 [Mycobacterium tuberculosis
           SUMu006]
 gi|306804654|ref|ZP_07441322.1| hypothetical protein TMHG_02085 [Mycobacterium tuberculosis
           SUMu008]
 gi|306808847|ref|ZP_07445515.1| hypothetical protein TMGG_02414 [Mycobacterium tuberculosis
           SUMu007]
 gi|306968947|ref|ZP_07481608.1| hypothetical protein TMIG_02382 [Mycobacterium tuberculosis
           SUMu009]
 gi|313659828|ref|ZP_07816708.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis KZN V2475]
 gi|61250932|sp|P0A644|RLMN_MYCTU RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|61250933|sp|P0A645|RLMN_MYCBO RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829812|sp|A1KMM4|RLMN_MYCBP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829852|sp|A5U6N5|RLMN_MYCTA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|254807189|sp|C1AFZ5|RLMN_MYCBT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|13882723|gb|AAK47272.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|31619651|emb|CAD96591.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121494409|emb|CAL72890.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124602034|gb|EAY61044.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134151034|gb|EBA43079.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148722596|gb|ABR07221.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224774368|dbj|BAH27174.1| hypothetical protein JTY_2896 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253319535|gb|ACT24138.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis KZN 1435]
 gi|289421504|gb|EFD18705.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis CPHL_A]
 gi|289437963|gb|EFD20456.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289540016|gb|EFD44594.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis K85]
 gi|289687207|gb|EFD54695.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis 02_1987]
 gi|289710563|gb|EFD74579.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|298496143|gb|EFI31437.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308326123|gb|EFP14974.1| hypothetical protein TMBG_03023 [Mycobacterium tuberculosis
           SUMu002]
 gi|308329626|gb|EFP18477.1| hypothetical protein TMCG_02130 [Mycobacterium tuberculosis
           SUMu003]
 gi|308333765|gb|EFP22616.1| hypothetical protein TMDG_00071 [Mycobacterium tuberculosis
           SUMu004]
 gi|308337159|gb|EFP26010.1| hypothetical protein TMEG_02147 [Mycobacterium tuberculosis
           SUMu005]
 gi|308340969|gb|EFP29820.1| hypothetical protein TMFG_00076 [Mycobacterium tuberculosis
           SUMu006]
 gi|308344802|gb|EFP33653.1| hypothetical protein TMGG_02414 [Mycobacterium tuberculosis
           SUMu007]
 gi|308348750|gb|EFP37601.1| hypothetical protein TMHG_02085 [Mycobacterium tuberculosis
           SUMu008]
 gi|308353451|gb|EFP42302.1| hypothetical protein TMIG_02382 [Mycobacterium tuberculosis
           SUMu009]
 gi|323718490|gb|EGB27661.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904495|gb|EGE51428.1| radical SAM protein [Mycobacterium tuberculosis W-148]
 gi|328457806|gb|AEB03229.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 364

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 121/369 (32%), Positives = 179/369 (48%), Gaps = 30/369 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN- 65
             L  +       A+ ++G+P      R  Q+    Y R I D + M+D+   VR  +  
Sbjct: 17  RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F  +     D       TRK L R            E+V +    R T+C+SSQ GC 
Sbjct: 73  AMFPNLLTASADITCDAGQTRKTLWR-----AVDGTMFESVLMRYPRRNTVCISSQAGCG 127

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EIL QV    + L D               G ++SN+V M
Sbjct: 128 MACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 174

Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           GMGEPL N+  V  ++   +     G   S R +T+ST G  P I  + +  +GV LA+S
Sbjct: 175 GMGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALS 234

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  + LR+ LVP+N ++ +   +DA R+Y  ++   R++ EY +++ +ND P  A  L
Sbjct: 235 LHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSIEYALIRDVNDQPWRADLL 293

Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K L    G  A +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I 
Sbjct: 294 GKRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREIS 353

Query: 360 AACGQLKSL 368
           AACGQL ++
Sbjct: 354 AACGQLAAV 362


>gi|290968497|ref|ZP_06560036.1| radical SAM enzyme, Cfr family [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781493|gb|EFD94082.1| radical SAM enzyme, Cfr family [Megasphaera genomosp. type_1 str.
           28L]
          Length = 345

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 179/370 (48%), Gaps = 29/370 (7%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           SL+     EL++ L    I     + R  QI+ ++Y + I  ++ M  + ++ R  L   
Sbjct: 3   SLLDFTLPELQQFLEAHSI----KKFRAKQIFHYVYKQNITVWEDMVQLPKQDRQKLQNL 58

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             I  P IV    S +G T K L++           +ETV +      ++C+SSQVGC++
Sbjct: 59  LEIYIPPIVSRLDSANGETVKLLVQL-----ADGQTVETVLMRHNYGNSICLSSQVGCAV 113

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC +     VRNLT  E+  Q+L  R                   V   + ++V+MG
Sbjct: 114 NCLFCASAKNGFVRNLTMGEMQAQLLAFRRY-----------------VTTDLHSVVLMG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
            GEPL N+DNV + L    ++       R +T+ST+G VP I ++ +E I V LA+SLHA
Sbjct: 157 TGEPLLNYDNVLRFLRTIHEAYSFYLGYRNMTISTAGIVPQIYKLAQEGIPVNLAVSLHA 216

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +++LR  ++PI   Y  E ++ A  HY  ++   ++TFEY++++ +  +P  A  L   
Sbjct: 217 SNHELRRKIMPIADTYAWEDIVRAAFHYFAVTGR-KVTFEYILIRDLTCTPACAEELASR 275

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           +      IN IP N            +++  F + +K+   S  +R   G +I AACGQL
Sbjct: 276 MAHKNVLINAIPINDNYDVGLRRPTLREMQAFVKILKKHHISVTLRREMGSEIQAACGQL 335

Query: 366 KSLSKRIPKV 375
           +   + + + 
Sbjct: 336 RIQREAVDRK 345


>gi|215428321|ref|ZP_03426240.1| hypothetical protein MtubT9_18783 [Mycobacterium tuberculosis T92]
 gi|215431827|ref|ZP_03429746.1| hypothetical protein MtubE_14401 [Mycobacterium tuberculosis
           EAS054]
 gi|260202014|ref|ZP_05769505.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium
           tuberculosis T46]
 gi|289444435|ref|ZP_06434179.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis T46]
 gi|289751545|ref|ZP_06510923.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289417354|gb|EFD14594.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis T46]
 gi|289692132|gb|EFD59561.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
          Length = 364

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 121/369 (32%), Positives = 179/369 (48%), Gaps = 30/369 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN- 65
             L  +       A+ ++G+P      R  Q+    Y R I D + M+D+   VR  +  
Sbjct: 17  RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F  +     D       TRK L R            E+V +    R T+C+SSQ GC 
Sbjct: 73  AMFPNLLTASADITCDAGQTRKTLWR-----AVDGTMFESVLMRYSRRNTVCISSQAGCG 127

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EIL QV    + L D               G ++SN+V M
Sbjct: 128 MACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 174

Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           GMGEPL N+  V  ++   +     G   S R +T+ST G  P I  + +  +GV LA+S
Sbjct: 175 GMGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALS 234

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  + LR+ LVP+N ++ +   +DA R+Y  ++   R++ EY +++ +ND P  A  L
Sbjct: 235 LHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSIEYALIRDVNDQPWRADLL 293

Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K L    G  A +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I 
Sbjct: 294 GKRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREIS 353

Query: 360 AACGQLKSL 368
           AACGQL ++
Sbjct: 354 AACGQLAAV 362


>gi|219118833|ref|XP_002180183.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408440|gb|EEC48374.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 378

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 195/375 (52%), Gaps = 26/375 (6%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +L  + + ELE  ++  G P    + R  Q++ WI  +G+ D   M+++ + +R  L++ 
Sbjct: 16  NLSTVTQAELEILMVAWGHP----KYRAQQVYNWIRQQGVTDVALMTNLPKTLRAQLSEF 71

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSL 126
                 EI  E +S DGT K   R           IE+V +P K  R T C+SSQ GC+ 
Sbjct: 72  SKPRSLEIAAEMVSKDGTIKRAYR-----CADGQMIESVLMPYKDGRYTACISSQAGCAQ 126

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIE---GMVIPSVGRKISNI 182
            C FC TG     R LTA+EI  QV + A  L       + I+     +      ++SN+
Sbjct: 127 GCVFCATGQMGFARQLTADEIFEQVAIFANELQQQKDQQQYIDAGGQEIQHGRATRLSNV 186

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG---EEIGVML 239
           V MGMGEPL N+ NV K+++  ++   L    R+IT+ST G VPNI ++    +   + L
Sbjct: 187 VFMGMGEPLANYRNVVKAVNRITND--LGIGARKITVSTVGIVPNIVKLTTDPDMPPIRL 244

Query: 240 AISLHAVSNDLRNILVPINRKYP-LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           A+SLH  S+  R+ L+P NR+Y  L+ L+ A R Y   +  RRIT E+ +++G ND+   
Sbjct: 245 AVSLHCASDKERSDLLPANRRYGGLDELMPALRDYIE-TTGRRITLEWALIQGENDNADS 303

Query: 299 ALNLIKI-----LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           A  L  +     L+     +N+IP NP  G E   + ++++  F + ++  G +   R  
Sbjct: 304 ARTLASLVQRYGLRRDMVHVNVIPLNPTGGFEGTPTQRQNVNVFVKTLEEHGIACTPRVR 363

Query: 354 RGLDILAACGQLKSL 368
           RG+DI A CGQL S 
Sbjct: 364 RGIDIDAGCGQLTSK 378


>gi|158313018|ref|YP_001505526.1| radical SAM protein [Frankia sp. EAN1pec]
 gi|205829763|sp|A8L6D8|RLMN_FRASN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|158108423|gb|ABW10620.1| radical SAM enzyme, Cfr family [Frankia sp. EAN1pec]
          Length = 385

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 182/369 (49%), Gaps = 22/369 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR--GIRDFQGMSDISQEVRHLL 64
             L  + R+E       +G+P      R  Q+ +  +       D   M+D+   +R  L
Sbjct: 23  RHLADLSRDERRAVATSLGLPA----FRADQLARHYFTHHLRADDADLMTDLPASIRPAL 78

Query: 65  NQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            +   +         + CDG  TRK + R          +IE+V +    R T+CVSSQ 
Sbjct: 79  VE-AMLPRLLTPATALDCDGGQTRKTVWRTVD-----GAKIESVLMRYPQRATVCVSSQA 132

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+  EI+ QV+ A   +      E         +    SN+
Sbjct: 133 GCGMGCPFCATGQGGLTRNLSTAEIVEQVVDAARTMAARTTAEGGLPGGPGRL----SNV 188

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEPL N+  +  +L    D    GL  S R +T+ST G VP I R+  E + V L
Sbjct: 189 VFMGMGEPLANYAALLAALHRLIDPAPDGLGLSARGLTVSTVGLVPAIRRLAGEGLPVTL 248

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ LVPIN ++P+  ++ A   Y  ++   R++ EY ++ G+NDSP  A
Sbjct: 249 AVSLHAPDDELRDELVPINTRWPVAEVLAAAWEYARVTGR-RVSIEYALIDGVNDSPERA 307

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L  +L G  A +NLIP NP  G  +  S  +    F E ++  G ++ +R  RG +I 
Sbjct: 308 DALAALLVGQLAHVNLIPLNPTGGSSWQASAPRGQRVFVERLRARGVAATVRDTRGREIA 367

Query: 360 AACGQLKSL 368
           AACGQL + 
Sbjct: 368 AACGQLAAE 376


>gi|307638089|gb|ADN80539.1| Ribosomal RNA large subunit methyl transferase N [Helicobacter
           pylori 908]
 gi|325996690|gb|ADZ52095.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori 2018]
 gi|325998282|gb|ADZ50490.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori 2017]
          Length = 357

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 195/384 (50%), Gaps = 45/384 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KTSIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EQEFTLRTIEIAHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAVLE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKHTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K+ NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKVLNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLSKRIP 373
           IR  + LDI AACGQL+    +  
Sbjct: 333 IRESKALDIEAACGQLREKKLQQK 356


>gi|303233967|ref|ZP_07320616.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna BVS033A4]
 gi|302494892|gb|EFL54649.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna BVS033A4]
          Length = 349

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 194/373 (52%), Gaps = 31/373 (8%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
              K  L  M  +EL+E  +  G        R  Q ++ I+   I +   M++ S  +R 
Sbjct: 1   MQNKIILENMTVDELKEFFVNNG----EKPFRALQYFQAIHKNRIFNPNEMTNFSNSLRE 56

Query: 63  LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            LNQ+  I    I+    S  D T+K+L+      I     +ETV++  K+  ++C+S+Q
Sbjct: 57  KLNQYNDIKNCSIIKRIDSKLDNTKKYLIEMSDGNI-----VETVFMQYKTHTSICLSTQ 111

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           +GC + C FC +  +  VRNL   E+  Q+ L  +                  +  +I+N
Sbjct: 112 IGCKMGCKFCASTKKSFVRNLQPYEMCAQIYLVEN-----------------DLDIRINN 154

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
           IV+MG+GEPL N+DNV + + + +D  G   S R ITLST G V  I R+  ++IG+ + 
Sbjct: 155 IVLMGIGEPLDNYDNVIRFIDLITDKDGQDMSIRNITLSTCGLVDKIIRLANDDIGINIT 214

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLH   ++ RN L+PI  KY +E ++DAC +Y   +   RI FEY +++ +NDS +   
Sbjct: 215 ISLHNPFDNERNKLMPIGNKYSIEEILDACDYYFKKTKR-RIGFEYTVIENVNDSKKYMD 273

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ +LK     +NLI  NP         D+  +  F E + ++  ++ IR  +G+DI  
Sbjct: 274 KLVSLLKNRNCLLNLITLNPIEEFNQKSPDRYKMTEFMEYMNKNNVNTTIRRKQGIDIDG 333

Query: 361 ACGQLK--SLSKR 371
           ACGQL+  +++KR
Sbjct: 334 ACGQLRINNMTKR 346


>gi|317181108|dbj|BAJ58894.1| hypothetical protein HPF32_1312 [Helicobacter pylori F32]
          Length = 357

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KTSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V++  K +           
Sbjct: 54  EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVFLKMKDKKIDGETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G  +     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSNFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|284045197|ref|YP_003395537.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684]
 gi|283949418|gb|ADB52162.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684]
          Length = 329

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 122/360 (33%), Positives = 180/360 (50%), Gaps = 36/360 (10%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  + L+  L      +   R R  Q+W+W   RG   ++ M+++   +R  L +     
Sbjct: 1   MDLDLLDRTLAD----EDQPRFRAKQVWEWT-ARGAAGYEEMTNLPAALRATLAERVPFS 55

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSF 130
              +  E  + DGT K L             +E V +  K  R +LC+SSQ GC LTC+F
Sbjct: 56  SLTLQHEAHASDGTVKALFSTHD-----GRAVEAVLMRYKDGRRSLCLSSQSGCPLTCTF 110

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TGT K  RNLTA EIL Q L  R +                    ++ + V MGMGEP
Sbjct: 111 CATGTMKFGRNLTASEILDQALHFRRI-------------------EEVDHCVFMGMGEP 151

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSND 249
           + N D+V  +         +  + RR  +ST G++P I R+ + E+ + LA+SLHA    
Sbjct: 152 MMNLDHVLAACRALPS---IGITHRRTAISTVGWIPGIERLTDSEMPIRLALSLHAPDEA 208

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           LR+ ++P+N +YPL  ++ ACR +        +  EYVML G+ND    AL L ++L+  
Sbjct: 209 LRSQIMPVNDRYPLRDVLRACRDFYEKKRRM-VFIEYVMLGGVNDGYAQALQLARLLEPW 267

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
             K+NLIP+NP     Y  S ++ I TF   ++  G S+ +R  RG DI AACGQL   +
Sbjct: 268 MFKVNLIPYNPT-DSIYDGSSREAIETFRAVLEEHGISATVRLTRGRDIDAACGQLAVKA 326


>gi|317182630|dbj|BAJ60414.1| hypothetical protein HPF57_1340 [Helicobacter pylori F57]
          Length = 357

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KTSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V++  K +           
Sbjct: 54  EQEFTLRTIEITHVRQSVDGSKKYLFK----SLRDNHTFEAVFLKMKDKKIDEETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|217034559|ref|ZP_03439968.1| hypothetical protein HP9810_874g16 [Helicobacter pylori 98-10]
 gi|216942979|gb|EEC22462.1| hypothetical protein HP9810_874g16 [Helicobacter pylori 98-10]
          Length = 357

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KTSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V++  + +           
Sbjct: 54  EQEFTLRTIEITHVRQSVDGSKKYLFK----SLRDNHTFEAVFLKMRDKKIDEETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|317010204|gb|ADU80784.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori India7]
          Length = 357

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKEMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + C+FC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFVRNLQASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPLEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESAKMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|308062688|gb|ADO04576.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori Cuz20]
          Length = 357

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EQEFTLRTIEITHVRESVDGSKKYLFK----SLKDNHTFEAVLLKMKDKKIDEETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + C+FC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCTFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|119357341|ref|YP_911985.1| radical SAM protein [Chlorobium phaeobacteroides DSM 266]
 gi|205829698|sp|A1BGN4|RLMN_CHLPD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|119354690|gb|ABL65561.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 363

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 189/373 (50%), Gaps = 33/373 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           ++  + R+EL +A+  +G P      RT QI +WI+      F+ M+ IS E+R+ L   
Sbjct: 7   NIKHLSRQELRQAIANLGEPA----YRTRQIHQWIFSHRAATFEEMTTISLELRNKLADQ 62

Query: 68  FSIIYPEIVDEKISCDG-------TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
           F I +P + D +   DG       T K LL           +IETV IP ++R T CVSS
Sbjct: 63  FRIGFPILADCQ--QDGSANDPFSTVKLLLELDDN-----EKIETVLIPSENRMTACVSS 115

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC L C FC +G     RNL+A+EI+ QV      +                   +I+
Sbjct: 116 QVGCPLQCRFCASGQTGFKRNLSADEIIDQVFSLNDFIR------------TKHESNEIT 163

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           NIV MGMGEPL NF+N+K+S+ + SD     +  +R+IT+ST G +P I  +G+  +   
Sbjct: 164 NIVFMGMGEPLLNFENLKESIEVLSDQSYKFNLPQRKITISTVGIIPGINELGKSGLKTK 223

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LAISLH+ S + R  L+P+  ++ L  L      Y   +    +T  Y++LKGINDS  D
Sbjct: 224 LAISLHSASQETRESLIPVASEFSLTQLRKTLSEYTSQT-GEPVTLVYMLLKGINDSVED 282

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L+K  +    KINLI +N     ++     +    F + I  +G    +R   G  I
Sbjct: 283 ARLLVKFSRSFLCKINLIDYNSIINMKFKPVFNETKDMFIQHILDAGIHVTVRKSHGASI 342

Query: 359 LAACGQLKSLSKR 371
            AACGQL +   +
Sbjct: 343 NAACGQLAAKGTQ 355


>gi|217032118|ref|ZP_03437618.1| hypothetical protein HPB128_16g78 [Helicobacter pylori B128]
 gi|216946266|gb|EEC24874.1| hypothetical protein HPB128_16g78 [Helicobacter pylori B128]
          Length = 365

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 129/388 (33%), Positives = 197/388 (50%), Gaps = 47/388 (12%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            + F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EREFTLRTIEIAHVRKSVDGSKKYLFK----SLKDNHTFEAVLLKMKDKKIDGETNAVLE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKAFNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +ND    A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDGLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSL--SKRIPKV 375
           IR  + LDI AACGQL+    S++I K 
Sbjct: 333 IRESKALDIEAACGQLREKKLSQQILKT 360


>gi|317179603|dbj|BAJ57391.1| hypothetical protein HPF30_1294 [Helicobacter pylori F30]
          Length = 357

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KMSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V++  K +           
Sbjct: 54  EQEFTLRTIEITHVRESVDGSKKYLFK----SLIDNHTFEAVFLKMKDKKIDGETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVANKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  + +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|308064180|gb|ADO06067.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori Sat464]
          Length = 357

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|261838701|gb|ACX98467.1| hypothetical protein KHP_1277 [Helicobacter pylori 51]
          Length = 357

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    FQ M ++ S++    L
Sbjct: 2   KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFQEMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V++  K +           
Sbjct: 54  EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVFLKMKDKKIDEETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 SEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  + +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|169824362|ref|YP_001691973.1| putative Fe-S-cluster redox protein [Finegoldia magna ATCC 29328]
 gi|205829759|sp|B0S143|RLMN_FINM2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|167831167|dbj|BAG08083.1| putative Fe-S-cluster redox protein [Finegoldia magna ATCC 29328]
          Length = 349

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 194/373 (52%), Gaps = 31/373 (8%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
              K  L  M  +EL+E  +  G        R  Q ++ I+   I +   M++ S  +R 
Sbjct: 1   MQNKIILENMTVDELKEFFVNNG----EKPFRALQYFQAIHKNRIFNPDEMTNFSNSLRG 56

Query: 63  LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            LNQ+  I    I+    S  D T+K+L+      I     +ETV++  K+  ++C+S+Q
Sbjct: 57  KLNQYNDIKNCSIIKRIDSKLDNTKKYLIEMSDGNI-----VETVFMQYKTHTSICLSTQ 111

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           +GC + C FC +  +  VRNL   E+  Q+ L  +                  +  +I+N
Sbjct: 112 IGCKMGCKFCASTKKSFVRNLQPYEMCAQIYLVEN-----------------DLDIRINN 154

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
           IV+MG+GEPL N+DNV + + + +D  G   S R ITLST G V  I R+  ++IG+ + 
Sbjct: 155 IVLMGIGEPLDNYDNVSRFIDLITDKDGQDMSIRNITLSTCGLVDKIIRLANDDIGINIT 214

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLH   ++ RN L+PI  KY +E ++DAC +Y   +   RI FEY +++ +NDS +   
Sbjct: 215 ISLHNPFDNERNKLMPIGNKYSIEEILDACDYYFKKTKR-RIGFEYTVIENVNDSKKYMD 273

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ +LK     +NLI  NP         D+  +  F E + ++  ++ IR  +G+DI  
Sbjct: 274 KLVSLLKNRNCLLNLITLNPIEEFNQKSPDRYKMTEFMEYMNKNNVNTTIRRKQGIDIDG 333

Query: 361 ACGQLK--SLSKR 371
           ACGQL+  +++KR
Sbjct: 334 ACGQLRINNMTKR 346


>gi|109946741|ref|YP_663969.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           acinonychis str. Sheeba]
 gi|123362803|sp|Q17ZF6|RLMN_HELAH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|109713962|emb|CAJ98970.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 353

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KPSVYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIASL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F +   EI     S DG++K+L +     +      E V++  K +           
Sbjct: 54  EQEFVLRTIEITHVSHSVDGSKKYLFK----SLKDNHTFEAVFLKMKDKKIDEETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           + E+ +GV LAISLHAV +  R+ L+P+N+KY +E +++  + +P L   +R+ FEY+++
Sbjct: 214 LAEKNLGVQLAISLHAVDDKTRSSLIPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KNLNDSLNCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|315585812|gb|ADU40193.1| Fe-S-cluster redox protein [Helicobacter pylori 35A]
          Length = 357

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLKELSQLLK--------PSFRAKQLYWWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V++  K +           
Sbjct: 54  EQEFTLRTIEITHVRKSVDGSKKYLFK----SLRDNHTFEAVFLKMKDKKIDEKTNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|124026587|ref|YP_001015702.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
           NATL1A]
 gi|205829803|sp|A2C4M8|RLMN_PROM1 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123961655|gb|ABM76438.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
           NATL1A]
          Length = 359

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 111/366 (30%), Positives = 177/366 (48%), Gaps = 37/366 (10%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFSIIYPEIV 76
           EE   + G        R  QI +WIY RG +    +S + ++ R  L  +   I   + +
Sbjct: 22  EEFARQEG----EKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEI 77

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
           +  ++ D T K L+            +ETV IP   R T+CVSSQ+GC + C FC TG  
Sbjct: 78  NRVVAEDETLKLLM-----GTFDGEIVETVGIPTDKRLTVCVSSQIGCPMGCKFCATGKG 132

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
            L R+L   EI+ QV+  R  +                  R+ +++V MGMGEPL N  N
Sbjct: 133 GLNRSLDVNEIVDQVISVRETM-----------------NRRPTHVVFMGMGEPLLNIQN 175

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLAISLHAVSND 249
           V  S+   +    +   +R+IT+ST G    ++ + +        +   LA+SLHA +  
Sbjct: 176 VLDSIECLTSD--IGIGQRKITVSTVGIPNTLSDLAKLAQDRLGRVQFTLAVSLHAPNQT 233

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           LR +++P    YP+  L+  C+ Y  L+   R++FEY++L G+ND    A  L  +++G 
Sbjct: 234 LRELIIPSASSYPINSLLKDCKKYIDLTGR-RVSFEYILLGGLNDKDIHAEQLANLMRGF 292

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
            + +NLI +NP     +    Q  +  F E ++  G +  +R  RG D  AACGQL+  +
Sbjct: 293 QSHVNLIAYNPIAEENFKRPSQSRVNAFRELLENRGVAVSVRASRGRDKDAACGQLRRQT 352

Query: 370 KRIPKV 375
               K+
Sbjct: 353 IDKIKI 358


>gi|322435186|ref|YP_004217398.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX9]
 gi|321162913|gb|ADW68618.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX9]
          Length = 383

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 191/378 (50%), Gaps = 41/378 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN-QH 67
           L G+   EL   +  +G        R  Q+   +Y + +   + ++ +   VR  L  + 
Sbjct: 22  LFGLSGAELRALVEDMG----ERPFRAKQLIDGLYKQRVGAVEEITTLPIAVRERLAAEG 77

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--------------R 113
           + +  PE+     S DGT ++L+R           +ETV++P                 R
Sbjct: 78  WVVGLPELAQTAKSVDGTERYLVRL-----ADGETVETVWMPGGDGAELQEGDEGPGYKR 132

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            T+CVSSQVGC++ C FC T    + RNLTA EI  QV    +  G   G + I      
Sbjct: 133 ATICVSSQVGCAVNCQFCLTAKLGMRRNLTAGEIAGQVTAVLNRQGIVIGKDRI------ 186

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG- 232
                  N+V MGMGEP  N+D+   ++ +  + MG+  S  R+T+STSG  P I R   
Sbjct: 187 -------NLVFMGMGEPFLNYDSFMDAVRLLVNEMGIPAS--RMTVSTSGIEPAIRRFAL 237

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E I   LA+SL+A ++ +R  ++PI RK+ +E L+DA +  P L     +TFEYV+L G+
Sbjct: 238 EPIRPNLALSLNASNDVVRESIMPITRKWDIEALLDAVKSVP-LRRQEYVTFEYVLLGGV 296

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND P  A  ++ +LKG+ AK+NLI +NP PG  Y    Q+    F + +   G  +  R 
Sbjct: 297 NDQPEHAREVLALLKGMQAKVNLIVWNPGPGVAYEQPSQEAADAFHKMLVVGGVPAFTRR 356

Query: 353 PRGLDILAACGQLKSLSK 370
           PRG DI AACGQLK   +
Sbjct: 357 PRGRDIYAACGQLKRTVE 374


>gi|224107843|ref|XP_002314621.1| predicted protein [Populus trichocarpa]
 gi|222863661|gb|EEF00792.1| predicted protein [Populus trichocarpa]
          Length = 369

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 134/385 (34%), Positives = 201/385 (52%), Gaps = 48/385 (12%)

Query: 19  EALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQG---------MSDISQEVRHLLNQH 67
           E +   G       M    +WK +Y  GI                +  ++++   +L +H
Sbjct: 1   EWVQSYGFRPGQAMM----LWKRLYGNGIWAHHVDELQGILLSHPIYCLNKDFVKMLGEH 56

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSL 126
                  + +   + DGTRK L R     +     IETV IP ++ R T+CVSSQVGC++
Sbjct: 57  AKFKALSLENILTASDGTRKILFRLDDGLV-----IETVVIPCDRGRTTVCVSSQVGCAM 111

Query: 127 TCSFCYTGT----------QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
            C FC+TG             L R+L+  EI+ Q + A+ LL +  G             
Sbjct: 112 NCQFCFTGRQANIFHFGTLMGLKRHLSTAEIIEQAVFAQRLLTNEVG------------- 158

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
              +N+V MGMGEPL N D+V K+  I     GL FS R++T+STSG VP + R   E  
Sbjct: 159 -PFTNVVFMGMGEPLQNIDSVIKAADIMVHDQGLHFSPRKVTVSTSGLVPQLKRFLHESN 217

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LA+SL+A ++++RN ++PINRKY L +L+   R   GL N+ ++ FEYVML+G+NDS 
Sbjct: 218 CALAVSLNATTDEVRNWIMPINRKYNLGLLLQTLREELGLKNSYKVLFEYVMLEGVNDSD 277

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
            DA  LI +++GIP KINLI FNP  G ++  +  + ++ F   +  +     +R  +G 
Sbjct: 278 DDAYRLIDLVQGIPCKINLIQFNPHCGSQFRPTSTEKMIKFRNILAEAKCVVFMRYSKGD 337

Query: 357 DILAACGQL---KSLSKRIPKVPRQ 378
           D +AACGQL    ++   + +VP Q
Sbjct: 338 DQMAACGQLGKPGAIQTPLIRVPEQ 362


>gi|332674192|gb|AEE71009.1| cfr family radical SAM enzyme [Helicobacter pylori 83]
          Length = 357

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V++  K +           
Sbjct: 54  EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVFLKMKDKKIDEETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  + +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|297380586|gb|ADI35473.1| radical SAM enzyme, Cfr family [Helicobacter pylori v225d]
          Length = 357

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDGETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + C+FC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  + +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQHKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|298735612|ref|YP_003728137.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori B8]
 gi|298354801|emb|CBI65673.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori B8]
          Length = 357

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 192/380 (50%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            + F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EREFTLRTIEIAHVRKSVDGSKKYLFK----SLKDNHTFEAVLLKMKDKKIDGETNAVLE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKAFNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +ND    A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDGLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|108563778|ref|YP_628094.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori HPAG1]
 gi|123246875|sp|Q1CRK2|RLMN_HELPH RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|107837551|gb|ABF85420.1| hypothetical protein HPAG1_1353 [Helicobacter pylori HPAG1]
          Length = 357

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            + F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EREFTLRTIEITHVRKSVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEKTNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S RRIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPRRITVSTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|317013192|gb|ADU83800.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori Lithuania75]
          Length = 357

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EQEFTLRTIEIAHVRKSVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDKETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + C+FC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|261414747|ref|YP_003248430.1| radical SAM enzyme, Cfr family [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371203|gb|ACX73948.1| radical SAM enzyme, Cfr family [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327425|gb|ADL26626.1| 23S rRNA m2A2503 methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 357

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 187/365 (51%), Gaps = 17/365 (4%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            ++  +  +EL+  L  +         R  QI KW++ + +R +  M +IS  +R  + +
Sbjct: 5   RNIKTLTTDELKAWLRDV----DEKPYRADQIQKWLFCQQVRSYDEMVNISPALREKMAK 60

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            F++   +     +S DGT KWL             IETV IP   R ++CVS+QVGC++
Sbjct: 61  QFTLCGLKEDQRSVSVDGTVKWLFETED-----GHHIETVMIPANGRYSVCVSTQVGCAM 115

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC T      RNL A EIL +++     L D     +  G+       +++NI+ MG
Sbjct: 116 NCAFCRTAKMGFTRNLEAGEILEEIINVNWYLKDNGFMNEEGGVA------QVTNIIFMG 169

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEPL N +NV +      +    +   +R+T+STSG VP I  + +      LA+SL++
Sbjct: 170 MGEPLNNLENVHRVCCTLHNQKLFNMGAKRMTVSTSGVVPKIKELVDRNTPCCLAVSLNS 229

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+ R+ ++P+N+ +P+E L++A   Y   ++   +TFE+V+++ I  +P+ A  LI+I
Sbjct: 230 TNNEYRSSVMPVNKTWPIEKLLEAVDEYIRRTDNY-VTFEFVLIQNITCTPKAAKELIRI 288

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                 K+N I  N            +++  F   ++ +     IR PRG DILAACGQL
Sbjct: 289 CAPRRVKVNAIVLNDGDDPTLHAPTPEEVEDFLAAVRAAEIQITIRNPRGRDILAACGQL 348

Query: 366 KSLSK 370
               +
Sbjct: 349 AYKKE 353


>gi|308185186|ref|YP_003929319.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori SJM180]
 gi|308061106|gb|ADO03002.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori SJM180]
          Length = 357

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            + F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EREFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|188528191|ref|YP_001910878.1| hypothetical protein HPSH_07275 [Helicobacter pylori Shi470]
 gi|205829774|sp|B2UVG6|RLMN_HELPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|188144431|gb|ACD48848.1| hypothetical protein HPSH_07275 [Helicobacter pylori Shi470]
          Length = 357

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + C+FC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADEIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|261840101|gb|ACX99866.1| hypothetical protein HPKB_1325 [Helicobacter pylori 52]
          Length = 357

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KMSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V++  + +           
Sbjct: 54  EQEFTLRTIEITHVRESIDGSKKYLFK----SLRDNHTFEAVFLKMRDKKIDEETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|72382850|ref|YP_292205.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
           marinus str. NATL2A]
 gi|123746249|sp|Q46J26|RLMN_PROMT RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|72002700|gb|AAZ58502.1| 23S rRNA m(2)A-2503 methyltransferase [Prochlorococcus marinus str.
           NATL2A]
          Length = 359

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 111/366 (30%), Positives = 176/366 (48%), Gaps = 37/366 (10%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFSIIYPEIV 76
           EE   + G        R  QI +WIY RG +    +S + ++ R  L  +   I   + +
Sbjct: 22  EEFARQEG----EKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEI 77

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
           +  ++ D T K L+            +ETV IP   R T+CVSSQ+GC + C FC TG  
Sbjct: 78  NRVVAEDETLKLLM-----GTFDGEIVETVGIPTDKRLTVCVSSQIGCPMGCKFCATGKG 132

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
            L R+L   EI+ QV+  R  +                  R+ +++V MGMGEPL N  N
Sbjct: 133 GLNRSLDVNEIVDQVISVRETM-----------------NRRPTHVVFMGMGEPLLNIRN 175

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-------VMLAISLHAVSND 249
           V  S+   +    +   +R+IT+ST G    ++ + +            LA+SLHA +  
Sbjct: 176 VLDSIECLTSD--IGIGQRKITVSTVGIPNTLSDLAKLAQDRLGRVKFTLAVSLHAPNQT 233

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           LR +++P    YP+  L+  C+ Y  L+   R++FEY++L G+ND    A  L  +++G 
Sbjct: 234 LRELIIPSASSYPINSLLKDCKKYIELTGR-RVSFEYILLGGLNDKDIHAEQLANLMRGF 292

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
            + +NLI +NP     +    Q  +  F E ++  G +  +R  RG D  AACGQL+  +
Sbjct: 293 QSHVNLIAYNPIAEENFKRPSQSRVNAFRELLENRGVAVSVRASRGRDKDAACGQLRRQT 352

Query: 370 KRIPKV 375
               K+
Sbjct: 353 IDKIKI 358


>gi|330685493|gb|EGG97146.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
           VCU121]
          Length = 278

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 166/302 (54%), Gaps = 25/302 (8%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           ++  L++ G      + R  QI++W+Y + +     M+++S+++R LL  +F++     V
Sbjct: 1   MQNWLIEHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLLKDNFAMTTLTTV 56

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
            ++ S DGT K+L             IETV +  +   ++CV++QVGC + C+FC +   
Sbjct: 57  VKQESRDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLG 111

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
            L RNL A EI+ QVL  +  L +                 ++S IV+MG+GEP  N+D 
Sbjct: 112 GLKRNLEAGEIVSQVLTVQKALDE--------------TEERVSQIVIMGIGEPFENYDE 157

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255
           +   L I +D   L+   R IT+STSG +P I    EE I +  A+SLH   +++R+ L+
Sbjct: 158 MMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSLHGAKDEVRSRLM 217

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315
           PINR Y +E L++A  +Y   +N  RITFEY +  G+ND    A +L  ++KG+   +NL
Sbjct: 218 PINRAYNVEKLMEAIEYYQEKTNR-RITFEYGLFGGVNDQLEHARDLAHLIKGLNCHVNL 276

Query: 316 IP 317
           IP
Sbjct: 277 IP 278


>gi|302380492|ref|ZP_07268957.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311435|gb|EFK93451.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 349

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 194/373 (52%), Gaps = 31/373 (8%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
              K  L  M  +EL+E  +  G        R  Q ++ I+   I +   M++ S  +R 
Sbjct: 1   MQNKIILENMTVDELKEFFVNNG----EKPFRALQYFQAIHKNRIFNPDDMTNFSNNLRG 56

Query: 63  LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            LNQ+  I    I+    S  D T+K+L+      I     +ETV++  K+  ++C+S+Q
Sbjct: 57  KLNQYNDIKNCSIIKRINSKLDNTKKYLIEMSDGNI-----VETVFMQYKTHTSICLSTQ 111

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           +GC + C FC +  +  VRNL   E+  Q+ L  +                  +  +I+N
Sbjct: 112 IGCKMGCKFCASTKKSFVRNLQPYEMCAQIYLVEN-----------------DLDIRINN 154

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           IV+MG+GEPL N+DNV + + + +D  G   S R ITLST G V  I R+ ++ IG+ + 
Sbjct: 155 IVLMGIGEPLDNYDNVSRFIDLITDKDGQDMSIRNITLSTCGLVDKIIRLADDDIGINIT 214

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLH   ++ RN L+PI  KY +E ++DAC +Y   +   RI FEY +++ +NDS +   
Sbjct: 215 ISLHNPFDNERNKLMPIGNKYSIEEILDACDYYFKKTKR-RIGFEYTVIENVNDSKKYMD 273

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ +LK     +NLI  NP         D+  +  F E + ++  ++ IR  +G+DI  
Sbjct: 274 KLVSLLKNRNCLLNLITLNPIEEFNQKSPDRFKMTEFMEYMNKNNVNTTIRRKQGIDIDG 333

Query: 361 ACGQLK--SLSKR 371
           ACGQL+  +++KR
Sbjct: 334 ACGQLRINNMTKR 346


>gi|24213541|ref|NP_711022.1| ribosomal RNA large subunit methyltransferase N [Leptospira
           interrogans serovar Lai str. 56601]
 gi|81589793|sp|Q8F7V1|RLMN_LEPIN RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|24194325|gb|AAN48040.1| predicted Fe-S-cluster redox enzyme [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 353

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 181/371 (48%), Gaps = 29/371 (7%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N  +K  L G   +EL E ++ +G        R  QI+  +YV     +   +  S+  +
Sbjct: 9   NQTEKIPLKGRTLKELSEIMITLG----EKPFRAKQIYHGLYVNRYETWDQFTTFSKIFK 64

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVS 119
             L +  S+ + ++V +  S DGT+K+     +   G   E E V+IP     R T+C+S
Sbjct: 65  EKLEELCSLTHLQVVKQLKSVDGTQKFTFTSES---GNGKEFEAVWIPSGDGGRKTICIS 121

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ+GC+L C FC T   +   NL A EI+ Q+L    ++GD                 K 
Sbjct: 122 SQIGCTLNCKFCATAKLEFQGNLKAHEIVDQILQVEKIVGD-----------------KA 164

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238
           +N+V MGMGEPL N+ NV ++ SI  D    +   +RIT+STSG V  I R  E +    
Sbjct: 165 TNVVFMGMGEPLHNYFNVIRAASIFHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYN 224

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
            AISL+      R  ++ I  K+ L  L+ A + +      RRITFEYVM+ G+N    +
Sbjct: 225 FAISLNHPDPKGRLQIMDIEEKFSLPELLQAAKDF-TRELKRRITFEYVMIPGVNMGFEN 283

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L+KI K +  KIN+IP N      +    +++I  F   ++ +G     R   G DI
Sbjct: 284 ANKLVKIAKSLDCKINVIPLN-TEFFGWRRPTREEIAEFIALLEPAGVPILNRRSPGKDI 342

Query: 359 LAACGQLKSLS 369
             ACG L S S
Sbjct: 343 FGACGMLASKS 353


>gi|15612390|ref|NP_224043.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori J99]
 gi|11387372|sp|Q9ZJI4|RLMN_HELPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|4155932|gb|AAD06899.1| putative [Helicobacter pylori J99]
          Length = 357

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 127/384 (33%), Positives = 194/384 (50%), Gaps = 45/384 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EQEFTLRTIEIAHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAVLE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VR+L A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRDLKASEIIQQALLIKEANN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLSKRIP 373
           IR  + LDI AACGQL+    +  
Sbjct: 333 IRESKALDIEAACGQLREKKLQQK 356


>gi|281356702|ref|ZP_06243193.1| radical SAM enzyme, Cfr family [Victivallis vadensis ATCC BAA-548]
 gi|281316829|gb|EFB00852.1| radical SAM enzyme, Cfr family [Victivallis vadensis ATCC BAA-548]
          Length = 344

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 182/368 (49%), Gaps = 29/368 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + +  L+G     L E      +P      R +QI  W+Y +GI + + M+++   VR L
Sbjct: 1   MSRPFLVGTSPAVLREWAKSHDLPA----FRGTQIADWVYKKGIVEPERMNNLPLPVREL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           +   F      + +   S DGT K LL            IE V IP + R T C+S+QVG
Sbjct: 57  IGNEFLAPGTAVTETAGSGDGTEKLLLTLQD-----GETIEMVLIPAEERLTFCLSTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +G   L+RNL A EIL + LL                      GR+  N+V
Sbjct: 112 CPVQCRFCASGRDGLIRNLAAGEILEEFLL-----------------GCSRAGRRPDNLV 154

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
            MG+GE L NF  +  +L + S   G   S RRIT+STSG+VP + +  E E    LAIS
Sbjct: 155 FMGIGEGLLNFRELAATLEVLSSPEGFGMSPRRITVSTSGYVPGMLKFAELEREFTLAIS 214

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  ++ R+ L+P   +YP+  ++ A   Y   +    +T EY +L+G ND+P  A  L
Sbjct: 215 LHAPDDETRSRLIPDKLRYPVAEIMAAADLYLRKAGRM-VTLEYTLLEGFNDTPPHARAL 273

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +      K+NLIP+N   G E+    ++ I  F E +  +G    +R  RG   +AAC
Sbjct: 274 GALAVRHRCKVNLIPYNST-GGEFRRPSRQAIREFEETVAAAGAHVTVRVERGAKSVAAC 332

Query: 363 GQLKSLSK 370
           GQL++ +K
Sbjct: 333 GQLRTRAK 340


>gi|254779939|ref|YP_003058046.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori B38]
 gi|254001852|emb|CAX30102.1| Conserved hypothetical protein [Helicobacter pylori B38]
          Length = 357

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            + F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EREFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDAETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + C+FC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|317178131|dbj|BAJ55920.1| hypothetical protein HPF16_1323 [Helicobacter pylori F16]
          Length = 357

 Score =  344 bits (884), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 194/380 (51%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KMSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V++  + +           
Sbjct: 54  EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVFLKMRDKKIDGETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + C+FC+T     +RNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFIRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLIPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|256827808|ref|YP_003151767.1| radical SAM enzyme, Cfr family [Cryptobacterium curtum DSM 15641]
 gi|256583951|gb|ACU95085.1| radical SAM enzyme, Cfr family [Cryptobacterium curtum DSM 15641]
          Length = 351

 Score =  344 bits (884), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 123/382 (32%), Positives = 184/382 (48%), Gaps = 42/382 (10%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MN     S+     E L  +L + G+P      R  QI +W+Y RG   +  M+D+   +
Sbjct: 1   MNT----SIDAYSLERLTSSLTEQGLPA----FRARQIIRWVYERGTLSYGEMTDLPLSL 52

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--------S 112
           R  L        P I+D +IS DG RK++L F         E+ETV IP +         
Sbjct: 53  RKSLAHQMPFAPPRIIDRQISRDGARKYVLAFSDNA-----EVETVAIPSRTKTAEGTPE 107

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
             T+C S+QVGC + CSFC TGT+ L R+L   E++ Q+L  +                 
Sbjct: 108 HLTVCFSTQVGCPMACSFCATGTEGLTRSLLPGEMVQQLLTVQR---------------- 151

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
             +  ++S+ V MG GEP  N+DN+  +L I ++   L    R IT+ST G +  I    
Sbjct: 152 -DMNMRVSHAVAMGQGEPFLNYDNLVAALEIINEP--LGIGARHITVSTCGILAGIDHFA 208

Query: 233 EEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
                  LA+SLH+   + RN L+P     PL  L  A + Y  +S   R + EY+M+ G
Sbjct: 209 HLSQQYTLALSLHSAIQEKRNQLMPRCSTVPLPRLKQALKEYARVSGR-RPSVEYLMIGG 267

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
           +ND   D   L     G+   INL+P N      +  S QK + T+ + +++ G+ + IR
Sbjct: 268 VNDGTTDLEALSSFCSGLFVHINLLPMNNIEESPFRPSPQKTMKTWKQVLEQRGWETTIR 327

Query: 352 TPRGLDILAACGQLKSLSKRIP 373
           + RG DI  ACGQLK+  + + 
Sbjct: 328 SSRGSDIDGACGQLKNKLQGLK 349


>gi|123969217|ref|YP_001010075.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
           AS9601]
 gi|205829808|sp|A2BT57|RLMN_PROMS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123199327|gb|ABM70968.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
           AS9601]
          Length = 348

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 180/374 (48%), Gaps = 39/374 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
           ++L+G    +LE   L  G        R  QI+ WIY      ++   +  +  + R  L
Sbjct: 2   KNLLGSSINDLENVALDYG----QAAFRGRQIYNWIYNYRNKNKNIDQIEVLPLDFREKL 57

Query: 65  N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
               F +    I +  ++ DGT K LL            IE V IP + R T C+SSQVG
Sbjct: 58  KVDGFKVSELVIKERNLANDGTLKLLLSTEDN-----ESIECVGIPTEKRLTACLSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG + L R+L A EIL Q+L                      + RK++NIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIEY-----------------EMNRKVTNIV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236
            MGMGEPL N D +  S+   ++      S+R+IT+ST      I+++  +         
Sbjct: 156 FMGMGEPLLNIDELLLSIRSINND--FQISQRKITVSTVAIPKMISKLSAKSFQILSNCQ 213

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LAISLHA +   R  ++P  + Y ++ +I+ C+ +   +   R++FEY+ML G+ND  
Sbjct: 214 FTLAISLHASNQKTRETIIPSAKNYEIKNIIEDCKTFVRETGR-RVSFEYLMLSGVNDKL 272

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L  +LKG    +NLI +N     E+  +  K++  F   +  +G +  +R  RGL
Sbjct: 273 EHACELSNLLKGFQCHVNLIQYNQIDEVEFQRTSLKNLQLFQSRLVNNGIAVSLRKSRGL 332

Query: 357 DILAACGQLKSLSK 370
           D  AACGQL+  +K
Sbjct: 333 DKNAACGQLRQNAK 346


>gi|317014803|gb|ADU82239.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori Gambia94/24]
          Length = 357

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 127/384 (33%), Positives = 194/384 (50%), Gaps = 45/384 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EQEFTLRTIEIAHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VR+L A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRDLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLSKRIP 373
           IR  + LDI AACGQL+    +  
Sbjct: 333 IRESKALDIEAACGQLREKKLQQK 356


>gi|45658616|ref|YP_002702.1| ribosomal RNA large subunit methyltransferase N [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|81406814|sp|Q72NP7|RLMN_LEPIC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|45601860|gb|AAS71339.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 353

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 182/371 (49%), Gaps = 29/371 (7%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
           N  +K  L G   +EL E ++ +G        R  QI+  +YV     +   +  S+  +
Sbjct: 9   NQTEKIPLKGRTLKELSEIMITLG----EKPFRAKQIYHGLYVNRYETWDQFTTFSKIFK 64

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVS 119
             L +  S+ + ++V +  S DGT+K+     +   G   E E V+IP     R T+C+S
Sbjct: 65  EKLEELCSLTHLQVVKQLKSVDGTQKFTFTSES---GNGKEFEAVWIPSGDGGRKTICIS 121

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQ+GC+L C FC T   +   NL A EI+ Q+L    ++GD                 K 
Sbjct: 122 SQIGCTLNCKFCATAKLEFQGNLKAHEIVDQILQVEKIVGD-----------------KA 164

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238
           +N+V MGMGEPL N+ NV ++ SI  D   L+   +RIT+STSG V  I R  E +    
Sbjct: 165 TNVVFMGMGEPLHNYFNVIRAASIFHDPDALNLGAKRITISTSGVVNGIRRFIENKEPYN 224

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
            AISL+      R  ++ I  K+ L  L+ A + +      RRITFEYVM+ G+N    +
Sbjct: 225 FAISLNHPDPKGRLQIMDIEEKFSLPELLQAAKDF-TRELKRRITFEYVMIPGVNMGFEN 283

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  L+KI K +  KIN+IP N      +    +++I  F   ++ +G     R   G DI
Sbjct: 284 ANKLVKIAKSLDCKINVIPLN-TEFFGWRRPTREEIAEFIALLEPAGVPILNRRSPGKDI 342

Query: 359 LAACGQLKSLS 369
             ACG L S S
Sbjct: 343 FGACGMLASKS 353


>gi|297588340|ref|ZP_06946983.1| cfr family radical SAM enzyme [Finegoldia magna ATCC 53516]
 gi|297573713|gb|EFH92434.1| cfr family radical SAM enzyme [Finegoldia magna ATCC 53516]
          Length = 349

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 118/373 (31%), Positives = 195/373 (52%), Gaps = 31/373 (8%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
              K  L  M  +EL+E  +  G        R  Q ++ I+   I D + M++ S ++R 
Sbjct: 1   MQNKIVLENMTVDELKEFFVNNG----EKSFRALQYFQAIHKNRIFDPEMMTNFSNDLRK 56

Query: 63  LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            L+ +  I    I+    S  D T+K+L+      I     +ETV++  K+  ++C+S+Q
Sbjct: 57  KLDNYNDIKNCSIIKRIDSKLDNTKKYLIELSDGNI-----VETVFMEYKTHTSICLSTQ 111

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           +GC + C FC +  +  VRNL   E+  Q+ L  +                  +G +I+N
Sbjct: 112 IGCKMGCKFCASTKKSFVRNLQPYEMCAQIYLVEN-----------------DLGIRINN 154

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           +V+MG+GEPL N+DNV + + + S+  G   S R ITLST G V  I ++ +E IG+ + 
Sbjct: 155 MVLMGIGEPLDNYDNVVRFIDLISNKEGQDMSIRNITLSTCGLVDKIIKLADEDIGINIT 214

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISLH   ++ RN L+PI  KY +E ++DAC +Y   +   RI FEY ++  +NDS +   
Sbjct: 215 ISLHNPFDNERNQLMPIGNKYSIEEILDACDYYFDKTKR-RIGFEYTVIGNVNDSKKYMD 273

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L+ +LK     +NLI  NP         D+  ++ F   + ++  ++ IR  +G+DI  
Sbjct: 274 KLVGLLKNRNCLLNLITLNPIEEFNQKSPDRNKMMEFMNYMNKNNVNTTIRRKQGIDIDG 333

Query: 361 ACGQLK--SLSKR 371
           ACGQL+  +++KR
Sbjct: 334 ACGQLRINNMTKR 346


>gi|308183521|ref|YP_003927648.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori PeCan4]
 gi|308065706|gb|ADO07598.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori PeCan4]
          Length = 357

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLKELGQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EQEFTLRTIEITHVRKSVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + C+FC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +ND+   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDNLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|291335247|gb|ADD94867.1| putative Fe S cluster redox protein [uncultured marine bacterium
           MedDCM-OCT-S09-C145]
          Length = 348

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 181/374 (48%), Gaps = 39/374 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
           ++L+G   ++LE   L  G        R  QI+ W+Y      +    ++ +  + R  L
Sbjct: 2   KNLLGCSVKDLESLALNFG----QAAFRGRQIYSWLYNYKNRSKSIDEINVLPLKFRDQL 57

Query: 65  N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             + F      + ++ ++ DGT K LL            +E V IP + R T C+SSQVG
Sbjct: 58  KNEAFLFGELTLNEKYLATDGTLKLLLNTRDN-----ESVECVGIPTEKRLTACLSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG + L R+L A EIL Q+L   + +                  +K+SNIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIENQM-----------------NQKVSNIV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIG 236
            MGMGEPL N D +  S+   ++      S+R+IT+ST      I+++ +       +  
Sbjct: 156 FMGMGEPLLNIDELLLSIRSINED--FDISQRKITVSTVAIPKMISKLSKLSFQVLGKCQ 213

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LAISLHA +  +R  ++P  + Y ++ +ID CR Y   +   R++FEY+ML G+ND  
Sbjct: 214 FTLAISLHASNQKIREAIIPSAKNYHIKNIIDDCREYVRETGR-RVSFEYLMLHGVNDKL 272

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L  ++KG    +NLI +N     E+  +  K+   F   +  SG +   R  RG 
Sbjct: 273 EHADELSNLIKGFQCHVNLIQYNHIEEVEFKQTPTKNAQLFQTRLSNSGINVSFRKSRGS 332

Query: 357 DILAACGQLKSLSK 370
           D  AACGQL+   K
Sbjct: 333 DRNAACGQLRQNEK 346


>gi|289643660|ref|ZP_06475773.1| radical SAM enzyme, Cfr family [Frankia symbiont of Datisca
           glomerata]
 gi|289506551|gb|EFD27537.1| radical SAM enzyme, Cfr family [Frankia symbiont of Datisca
           glomerata]
          Length = 413

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 183/371 (49%), Gaps = 27/371 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLL 64
             L  +   +  E  + +G P      R  Q+ +  + R +R  D + M+D+        
Sbjct: 44  RHLADLTTTQRRELTVSLGEPA----FRADQVARHYFARYLRAGDAEAMTDLPAAS-RAA 98

Query: 65  NQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
                +         ++CD   T K L R         V IE+V +    R T+CVSSQ 
Sbjct: 99  LLEALLPALLTPARTMTCDAGATHKTLWR-----AFDGVLIESVLMRYPDRATVCVSSQA 153

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RNL+A EI+ QV+ A            I    +     ++SN+
Sbjct: 154 GCGMGCPFCATGQGGLTRNLSAAEIVEQVVAAA---------GAIARGELAGGPARLSNV 204

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239
           V MGMGEPL N+  V  +L + +     GL  S R IT+ST G VP I R+    + V L
Sbjct: 205 VFMGMGEPLANYATVVAALRVLTAPPPAGLGLSARSITVSTVGLVPAIRRLAGAGLPVTL 264

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA  ++LR+ LVP+NR++P+  ++ A   Y   +  RR++ EY ++  +ND P  A
Sbjct: 265 AVSLHAPDDELRDSLVPVNRRWPVAEVLTAAWEYAE-TTGRRVSIEYALIDDVNDQPERA 323

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L  +L G  A +NLIP NP  G  +  S+++    F   ++  G ++ +R  RG DI 
Sbjct: 324 DALADLLVGRLAHVNLIPLNPTRGVSWQASERRREREFVRRLRLRGITATVRDTRGRDIA 383

Query: 360 AACGQLKSLSK 370
           AACGQL + + 
Sbjct: 384 AACGQLAADAP 394


>gi|317011560|gb|ADU85307.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori SouthAfrica7]
          Length = 357

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 126/384 (32%), Positives = 194/384 (50%), Gaps = 45/384 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIASL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            Q F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDGETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VR+L A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRDLKASEIVQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  + +P L   +R+ FEY+++
Sbjct: 214 LASKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KNLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLSKRIP 373
           IR  + LDI AACGQL+    +  
Sbjct: 333 IRESKALDIEAACGQLREKKLQQK 356


>gi|212550675|ref|YP_002308992.1| hypothetical protein CFPG_318 [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548913|dbj|BAG83581.1| conserved hypothetical protein [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 322

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 121/339 (35%), Positives = 181/339 (53%), Gaps = 25/339 (7%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
               QI  W+Y R +   + M++IS   R  LN+H+ I   E + ++ S DG  K+L   
Sbjct: 4   FTAKQIANWLYKRRVSSIEEMTNISLLHRKQLNEHYYIGKKEYLYKQKSMDGAIKYLF-- 61

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
               I     IE+VYIPEK+R TLCVSSQ+GC + C FC TG Q     LT  +I+ Q++
Sbjct: 62  ---SINNRHFIESVYIPEKARATLCVSSQIGCKMHCLFCTTGRQGFEGQLTTGDIINQII 118

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                                     ++N+V MGMGEPL N + + KSL I + + G ++
Sbjct: 119 SIPESA-------------------SLTNLVFMGMGEPLDNIEVLLKSLEILTANYGFAW 159

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
           S +RIT+ST G +P + R+ EE  V LAIS+H+  +  R   +PI +KYP++ +I   + 
Sbjct: 160 SPKRITISTVGIIPELKRLLEETKVRLAISVHSPFHAERMSWIPIEKKYPIKKIIGLIQQ 219

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           Y      RR++FEY+    +ND  + A  L ++LKGIP ++NLI ++P        SD K
Sbjct: 220 Y-NFRFQRRVSFEYITFGRLNDDIKHASALFRLLKGIPCRVNLIKYHPQQDTVLPASDLK 278

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           +++ F   +        IR+ RG DI AACG L +   +
Sbjct: 279 NMIAFRNYLNSKKIICTIRSSRGEDISAACGMLSTKKNK 317


>gi|254527128|ref|ZP_05139180.1| radical SAM enzyme, Cfr family [Prochlorococcus marinus str. MIT
           9202]
 gi|221538552|gb|EEE41005.1| radical SAM enzyme, Cfr family [Prochlorococcus marinus str. MIT
           9202]
          Length = 348

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 118/373 (31%), Positives = 180/373 (48%), Gaps = 39/373 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
           ++L+G   ++LE   L+ G        R  QI  WIY      +    +  +  + R  L
Sbjct: 2   KNLLGSSVKDLENVALEYG----QAAFRGRQIHNWIYNYRNKKKSIDQIEVLPLDFRKKL 57

Query: 65  NQ-HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
               F +    + +  ++ DGT K LL            IE V IP + R T C+SSQVG
Sbjct: 58  KDDGFKLSELSVQERNLANDGTLKLLL-----SANDNESIECVGIPTEKRLTACLSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG + L R+L A EIL Q+L   +                  + RK++NIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIEN-----------------EMNRKVTNIV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236
            MGMGEPL N D++  S+   +       S+R+IT+ST      I ++  +         
Sbjct: 156 FMGMGEPLLNIDDLLVSIRSINKD--FQISQRKITVSTVAVPKMINKLSAKSFQILGNCQ 213

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LAISLHA +  +R  ++P  + Y +E +I+ C+ Y   +   R++FEY+ML G+ND  
Sbjct: 214 FTLAISLHASNQKIRETIIPSAKNYEIENIIEDCKQYVRDTGR-RVSFEYLMLSGVNDKL 272

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L  +LKG    +NLI +N     E+  +  K + +F   +  +G +  +R  RGL
Sbjct: 273 EHANELSNLLKGFQCHVNLIQYNQIDEVEFQRTSLKSLQSFQSKLSHNGIAVSLRKSRGL 332

Query: 357 DILAACGQLKSLS 369
           D  AACGQL+  +
Sbjct: 333 DKNAACGQLRQNA 345


>gi|33862037|ref|NP_893598.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|81575609|sp|Q7V010|RLMN_PROMP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|33634255|emb|CAE19940.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 348

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 182/374 (48%), Gaps = 39/374 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
           ++L+G   ++LE+  L  G        R  QI+ W+Y      +    ++ +  + R  L
Sbjct: 2   KNLLGCSVKDLEKIALNYG----QAAFRGRQIYNWLYNYKNRSKSIDEINVLPLKFRDQL 57

Query: 65  N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             + F      + ++ ++ DGT K LL            +E V IP + R T C+SSQVG
Sbjct: 58  KNEAFLFGELTLKEKYLATDGTLKLLLNTRDN-----ESVECVGIPTEKRLTACLSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG + L R+L   EIL Q+L   + +                  +K+SNIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKVSEILDQILFIENQM-----------------NQKVSNIV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIG 236
            MGMGEPL N D +  S+   ++    + S+R+IT+ST      I+++ E       +  
Sbjct: 156 FMGMGEPLLNIDELLLSIRSINED--FAISQRKITVSTVAIPKMISKLSELSFQVLGKCQ 213

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LAISLHA +  +R  ++P  + Y ++ +ID CR Y   +   R++FEY+ML G+ND  
Sbjct: 214 FTLAISLHASNQKIREAIIPSAKNYHIKNIIDDCREYVRETGR-RVSFEYLMLHGVNDKL 272

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L  ++KG    +NLI +N     E+  +  K+   F   +  SG +   R  RG 
Sbjct: 273 EHADELSNLIKGFQCHVNLIQYNHIEEVEFKQTPIKNAQLFQTRLSNSGINVSFRKSRGS 332

Query: 357 DILAACGQLKSLSK 370
           D  AACGQL+   K
Sbjct: 333 DRNAACGQLRQNDK 346


>gi|15646037|ref|NP_208219.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori 26695]
 gi|3287947|sp|O25970|RLMN_HELPY RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|2314600|gb|AAD08467.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 357

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            + F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EREFALRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDAETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + CSFC+T     VRNL A EI+ Q LL +               
Sbjct: 110 REKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPLEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     ++   F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|157414083|ref|YP_001484949.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
           marinus str. MIT 9215]
 gi|205829804|sp|A8G6Y2|RLMN_PROM2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|157388658|gb|ABV51363.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
           MIT 9215]
          Length = 348

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 117/373 (31%), Positives = 180/373 (48%), Gaps = 39/373 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
           ++L+G   ++LE   L+ G        R  QI  WIY      +    +  +  + R  L
Sbjct: 2   KNLLGSSVKDLENVALEYG----QAAFRGRQIHNWIYNYRNKKKSIDQIEALPLDFRKKL 57

Query: 65  NQ-HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
               F +    + +  ++ DGT K LL            IE V IP + R T C+SSQVG
Sbjct: 58  KDDGFKLSELSVQERNLANDGTLKLLL-----SANDNESIECVGIPTEKRLTACLSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG + L R+L A EIL Q+L   +                  + RK++NIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIEN-----------------EMNRKVTNIV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236
            MGMGEPL N D++  S+   +       S+R+IT+ST      I ++  +         
Sbjct: 156 FMGMGEPLLNIDDLLVSIRSINKD--FQISQRKITVSTVAVPKMINKLSAKSFQILGNCQ 213

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LAISLHA +  +R  ++P  + Y +E +I+ C+ Y   +   R++FEY+ML G+ND  
Sbjct: 214 FTLAISLHASNQKIRETIIPSAKNYEIENIIEDCKQYVRDTGR-RVSFEYLMLSGVNDKL 272

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L  +L+G    +NLI +N     E+  +  K + +F   +  +G +  +R  RGL
Sbjct: 273 EHANELSNLLRGFQCHVNLIQYNQIDEVEFQRTSLKSLQSFQSRLSHNGIAVSLRKSRGL 332

Query: 357 DILAACGQLKSLS 369
           D  AACGQL+  +
Sbjct: 333 DKNAACGQLRQNA 345


>gi|126697010|ref|YP_001091896.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
           MIT 9301]
 gi|205829802|sp|A3PEX0|RLMN_PROM0 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|126544053|gb|ABO18295.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
           MIT 9301]
          Length = 347

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 185/374 (49%), Gaps = 39/374 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
           ++L+G   ++LE   L  G        R  QI+ WIY      ++   +  +  + R  L
Sbjct: 2   KNLLGSTIKDLENVALDYG----QAGFRGRQIYNWIYNYRNKKKNIDQIEVLPLDFRKRL 57

Query: 65  NQ-HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
               F +    I +  ++ DGT K LL            IE V IP + R T C+SSQVG
Sbjct: 58  KDDGFKVSDLSIHERNLANDGTLKLLLSTEDN-----ESIECVGIPTEKRLTACLSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG + L R+L   EIL Q+L   +                  + RK++NIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKVSEILDQILFIEN-----------------EMNRKVTNIV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236
            MGMGEPL N D++  S+   ++   L  S+R+IT+ST      I ++  +         
Sbjct: 156 FMGMGEPLLNIDDLLLSIRSINED--LKISQRKITVSTVAVPKMINKLSAKSFKILGNCQ 213

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LA+SLHA +  +R  ++P  + Y +E +I+ C+ Y   +   R++FEY+ML+G+ND  
Sbjct: 214 FTLAVSLHAPNQKIRETIIPSAKNYEIENIIEDCKQYVRDTGR-RVSFEYLMLRGVNDKI 272

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L  +LKG    +NLI +N     E+  +  KD+ +F   +  +G +  +R  RGL
Sbjct: 273 EHANELSHLLKGFQCHVNLIQYNQIDEVEFQRACLKDLQSFQSRLSHNGIAVSLRKSRGL 332

Query: 357 DILAACGQLKSLSK 370
           D  AACGQL+  ++
Sbjct: 333 DKNAACGQLRQNAR 346


>gi|94968595|ref|YP_590643.1| hypothetical protein Acid345_1567 [Candidatus Koribacter versatilis
           Ellin345]
 gi|122986342|sp|Q1IRD1|RLMN_ACIBL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|94550645|gb|ABF40569.1| 23S rRNA m(2)A-2503 methyltransferase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 346

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 130/363 (35%), Positives = 200/363 (55%), Gaps = 42/363 (11%)

Query: 21  LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ-HFSIIYPEIVDEK 79
           + ++G P      R+ Q+W+ +Y   I      + +   +R  L    ++I +P +    
Sbjct: 1   MERLGQPA----YRSRQLWQGLYRDRIASLDQFTTLPIPLREELKSSGWAIAFPFVQKRF 56

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIPEK---------------SRGTLCVSSQVGC 124
            S DGT ++LL+F          +ETV++PE                 R T+CVSSQVGC
Sbjct: 57  TSTDGTVRYLLQFSD-----GQSVETVWMPEGDGGEQGDGSEDGPSYDRATICVSSQVGC 111

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC T    L+RNL+A EI+ Q+L                      V +   N+V 
Sbjct: 112 AVDCQFCMTALLGLLRNLSAGEIVGQILAVLKDEN-------------VDVEKSRINLVF 158

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MG GEP  NFDN  K++++ ++++G+  S  R+T+STSG VP I   G+  I   LAISL
Sbjct: 159 MGQGEPFLNFDNFVKAVTLLAEAVGIPES--RMTVSTSGIVPRIVDFGQLAIRPKLAISL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           +A +++ R  L+PI +K+ LE L+ A R +P L N  R+TFEYV+L G+NDS ++A  ++
Sbjct: 217 NASNDESRRELMPITKKWTLEKLMSAAREFP-LRNRERMTFEYVLLGGVNDSEQNAREVV 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++L+G+ AK+NLI +NP P   +   D + +  F + +  +G  + IR PRG DI AACG
Sbjct: 276 QLLRGLRAKVNLIAWNPGPEIPFSTPDPQHVEAFQQILIDAGIPTFIRKPRGRDIFAACG 335

Query: 364 QLK 366
           QLK
Sbjct: 336 QLK 338


>gi|291530132|emb|CBK95717.1| radical SAM enzyme, Cfr family [Eubacterium siraeum 70/3]
          Length = 345

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 184/365 (50%), Gaps = 35/365 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQ---IWKWIYVRGIRDFQGMSDISQEVRHL 63
             +  +  E+ E+ L + G        R +Q   I++ IY R    F  M+  S +++ L
Sbjct: 2   TDIYSLTYEQAEKLLTENG-------FRATQCANIFRDIYKRKATGFNEMTLTSADIKAL 54

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+  +     +I +   S D T K+L      C      +ETV + +K   ++C+S+Q G
Sbjct: 55  LSDKYFFGKLKIDEILQSVD-TSKYLFELSDGC-----RVETVLMRQKFGNSICISTQSG 108

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC +G  +  R+LTA E++ Q+L                          ISNI 
Sbjct: 109 CNMGCKFCCSGRLRKQRDLTAGEMVSQILTVEKYQ-----------------NITISNIT 151

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242
           +MG+GEP  N+D +   L I +   G+    + IT+ST G           +    LA+S
Sbjct: 152 VMGIGEPFDNYDALCDFLDIVTVPGGIEIGTKHITVSTCGLCDKTELFAKRKEPCNLAVS 211

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +++RN L+PINR+Y +  +I++ ++Y   +N  ++  EY++L GINDS  +A  L
Sbjct: 212 LHAPDDEIRNRLMPINRRYSISQVIESAKYYVERTNR-KVLLEYILLDGINDSRENARQL 270

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++      +NLIP+NP P  E+  S +++I  F + +K++  +   R   G ++ AAC
Sbjct: 271 AALIGNARLFVNLIPYNPSPDSEFKRSSEENITAFYDELKKNRINVTRRKEFGTELSAAC 330

Query: 363 GQLKS 367
           GQL+S
Sbjct: 331 GQLRS 335


>gi|210135589|ref|YP_002302028.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
           pylori P12]
 gi|254807183|sp|B6JNS0|RLMN_HELP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|210133557|gb|ACJ08548.1| radical SAM domain-containing enzyme [Helicobacter pylori P12]
          Length = 357

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 124/380 (32%), Positives = 192/380 (50%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            + F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EREFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDKETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + C+FC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  + +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +ND    A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDGLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|208435296|ref|YP_002266962.1| hypothetical protein HPG27_1349 [Helicobacter pylori G27]
 gi|254807184|sp|B5Z947|RLMN_HELPG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|208433225|gb|ACI28096.1| hypothetical protein HPG27_1349 [Helicobacter pylori G27]
          Length = 357

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64
           K S+     +EL + L            R  Q++ W+Y +    F+ M ++ S++    L
Sbjct: 2   KASVYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113
            + F++   EI   + S DG++K+L +     +      E V +  K +           
Sbjct: 54  EREFTLRTIEIAHVRKSIDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAILE 109

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T+CVS Q+GC + C+FC+T     VRNL A EI+ Q LL +               
Sbjct: 110 GEKYTVCVSCQIGCQVGCTFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
                  K  NIV MGMGEPL N D V K++ I +   G+  S +RIT+STSG    I  
Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213

Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  + +GV LAISLHAV +  R+ L+P+N+KY +E +++  R +P L   +R+ FEY+++
Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           K +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F++ +   G    
Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332

Query: 350 IRTPRGLDILAACGQLKSLS 369
           IR  + LDI AACGQL+   
Sbjct: 333 IRESKALDIEAACGQLREKK 352


>gi|193212778|ref|YP_001998731.1| ribosomal RNA large subunit methyltransferase N [Chlorobaculum
           parvum NCIB 8327]
 gi|193086255|gb|ACF11531.1| radical SAM enzyme, Cfr family [Chlorobaculum parvum NCIB 8327]
          Length = 374

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 183/373 (49%), Gaps = 33/373 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            ++  + R+ELE  + ++G P      R  Q+ +W+Y      F+ M+   +++R  L  
Sbjct: 18  PNIRELNRQELEHLMQRLGQPA----YRARQLHQWLYSHQALSFEDMTSFGKKLREQLAG 73

Query: 67  HFSIIY-----PEIVDEKISCDG---TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
            ++I        E    + +  G   T K+L++         V IE+V IP + R T C+
Sbjct: 74  SWAIRPATLDATETEPAQCAAPGAIPTSKFLVKL-----DDGVLIESVLIPSEERMTACI 128

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC+L C+FC TG     R+L A EI  QV L +                    GR 
Sbjct: 129 SSQVGCALRCTFCATGQMGFKRDLVAPEITDQVFLLQQ-------------EAHRLYGRG 175

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
           I+N V MGMGEPL N DNV +S+S  ++     S S+R+IT+ST G VP I R+    + 
Sbjct: 176 ITNTVFMGMGEPLLNLDNVFESISTLTEQEYRFSISERKITISTVGLVPEIGRIATSGLK 235

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LAISLH+     R  ++P+   YPL+ L  A   Y      + +T  Y++L+GIND+P
Sbjct: 236 TKLAISLHSADQATRERMMPVAADYPLDELSRAISAY-NTKTGQPVTLVYMLLEGINDAP 294

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
            DA  L +  K    KINLI +N     ++          F E +  +G    +R  +G 
Sbjct: 295 EDARKLARFAKRGLCKINLIDYNAIVNLKFRPGYGSAKSMFIERLLDAGLHVTVRKSQGA 354

Query: 357 DILAACGQLKSLS 369
            I AACGQL + S
Sbjct: 355 TINAACGQLATRS 367


>gi|123966894|ref|YP_001011975.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
           MIT 9515]
 gi|205829807|sp|A2BYK7|RLMN_PROM5 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|123201260|gb|ABM72868.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
           MIT 9515]
          Length = 348

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 180/374 (48%), Gaps = 39/374 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
           ++L+G   ++LE   L  G        R  QI+ W+Y      +    ++ +    R+ L
Sbjct: 2   KNLLGCSVKDLENVALNYG----QAAFRGRQIYSWLYNYKNRSKSIDEINVLPLNFRNQL 57

Query: 65  N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
             + F      + ++ ++ DGT K LL            +E V IP + R T C+SSQVG
Sbjct: 58  KKEGFIFGELILKEKYLANDGTLKLLLNTRDN-----ESVECVGIPTEKRLTACLSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG + L R+L A EIL Q+L   +                  + +K++NIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIEN-----------------EMNQKVTNIV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236
            MGMGEPL N D +  S+   ++      S+RRIT+ST      I ++ E          
Sbjct: 156 FMGMGEPLLNIDELLFSIRSINED--FDVSQRRITVSTVAIPNMIRKLSEMSFQVLGKCQ 213

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LAISLHA +   R  ++P  + Y ++ +ID CR +   +   R++FEY+ML G+ND  
Sbjct: 214 FTLAISLHASNQKTRETIIPSAKNYHIKYIIDDCREFVKKTGR-RVSFEYLMLHGVNDKL 272

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L  ++KG    +NLI +N     E+  +  K+   F   +  +G +  +R  RG 
Sbjct: 273 EHADELSNLIKGFQCHVNLIQYNQIEEVEFKQTPSKNAQLFQNRLSNNGINVSLRKSRGS 332

Query: 357 DILAACGQLKSLSK 370
           D  AACGQL+  +K
Sbjct: 333 DRNAACGQLRQNAK 346


>gi|78186813|ref|YP_374856.1| hypothetical protein Plut_0951 [Chlorobium luteolum DSM 273]
 gi|123771083|sp|Q3B4B8|RLMN_PELLD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78166715|gb|ABB23813.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium luteolum DSM 273]
          Length = 361

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 188/371 (50%), Gaps = 30/371 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           ++ +++ +  +EL+EAL  I  PQ     R +Q+ +W++      F  M+ +S  +R  L
Sbjct: 4   ERSNILNLRMDELKEALAAINEPQW----RAAQLHQWLFSHRAGSFDDMTTLSLPLRRKL 59

Query: 65  NQHFSIIYPEIVDEKISCDG-----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
            + F I  P       + +G     T K L++ P         +ETV IP  +R T CVS
Sbjct: 60  AESFYIQQPVTEKHDETMEGSPAGATEKLLIQLPD-----GERVETVLIPGPNRMTACVS 114

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +Q GC L CSFC TG     RNL++ EI  QV     +L +             +    I
Sbjct: 115 AQAGCLLGCSFCATGQMGFRRNLSSGEITGQVWALSDMLQE------------RNREASI 162

Query: 180 SNIVMMGMGEPLCNFDNVKKS-LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           SNIV MGMGEPL N  NV ++ L++++     S S+R+IT+ST G  P I R+ +  +  
Sbjct: 163 SNIVFMGMGEPLLNTANVIEAVLNLSTRKYRFSTSQRKITISTVGITPEIDRLADTGLKT 222

Query: 238 MLAISLHAVSNDLRNILVPIN-RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            LA+SLH+   + R  L+P   R+YPL+ L ++   Y   +    +T  Y++LKGINDS 
Sbjct: 223 KLAVSLHSAIQEKREALMPQAARQYPLDRLRESLIGYASKT-GEPVTLAYMLLKGINDSE 281

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
            DA  LI+   G   KINLI +NP    ++          F + ++ +G    IR   G 
Sbjct: 282 MDAKRLIRYASGFFCKINLIDYNPIVNIKFEPVCDGTRERFRDILQDAGLQVTIRKSYGT 341

Query: 357 DILAACGQLKS 367
            I AACGQL +
Sbjct: 342 PINAACGQLAA 352


>gi|332298026|ref|YP_004439948.1| Ribosomal RNA large subunit methyltransferase N [Treponema
           brennaborense DSM 12168]
 gi|332181129|gb|AEE16817.1| Ribosomal RNA large subunit methyltransferase N [Treponema
           brennaborense DSM 12168]
          Length = 342

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 179/367 (48%), Gaps = 33/367 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  + K S+ G++ EEL        +P    + R  QI+KW+   G   FQ M ++ Q +
Sbjct: 1   MATMDKISVAGLLPEELSA------LPGVSPQFRGKQIFKWL-GNGAASFQEMRNLPQHL 53

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVS 119
           R  L++  ++   +I  E    DGT K  +            IETV + + S R T CVS
Sbjct: 54  RDSLSETAAVRSSQIAQELRDPDGTVKLQITLHD-----GACIETVLLTDSSGRKTACVS 108

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
            Q GC++ C+FC TG   L RNL A EI+ Q L    + G                  K+
Sbjct: 109 CQAGCAMGCAFCQTGKLGLARNLDAAEIVEQFLYLEQVSG------------------KL 150

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
            NIV MGMGEP+ N   V+K++++ +   G   S RRIT+STSG +  I  + +    + 
Sbjct: 151 DNIVFMGMGEPMMNLSAVRKAVAVLTHPEGRGLSARRITVSTSGIIKGIYDLADNGPHMR 210

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SL     +LR  L+P+ +  PL  L  A  +Y   S   R T E  +L G+N     
Sbjct: 211 LAVSLTTADPELRERLMPVTKGNPLPELQKAIAYYTEKSKK-RCTLEAALLAGMNTGTAS 269

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           A  LI+  +G+   INLIP+NP PG  +      +   F   ++++  +  +RT RG  I
Sbjct: 270 AERLIEFARGLDVHINLIPWNPVPGLPFAEPSAAECTAFVRLLEKARLNVTLRTRRGRKI 329

Query: 359 LAACGQL 365
             ACGQL
Sbjct: 330 GGACGQL 336


>gi|290980807|ref|XP_002673123.1| predicted protein [Naegleria gruberi]
 gi|284086704|gb|EFC40379.1| predicted protein [Naegleria gruberi]
          Length = 482

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 161/439 (36%), Positives = 232/439 (52%), Gaps = 62/439 (14%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             + ++SL+G+ + E++E L K   P      R ++I+K+IY  G R F  ++ +++  R
Sbjct: 27  TQIVRKSLMGLNKTEMKEILEKT-HPHVASSFRLNEIYKFIYKFGARKFDDITVLTKSDR 85

Query: 62  HLLNQHFSIIYPEIVDEKISC--DG-TRKWLLRFPARCIGGPV----------------- 101
             L++ +SI     ++E+I    D  TRK+L  F       PV                 
Sbjct: 86  QSLSELYSIDILGNIEEEIKSKKDKHTRKFLFAFQNPKYVPPVADNSVDSTIVSTTSSAS 145

Query: 102 -------------------------------EIETVYIPEK-------SRGTLCVSSQVG 123
                                          ++E VYI           RGT+C+SSQVG
Sbjct: 146 SSCGNQQNISDADVAISPMKKPTLKEQKQFNKVEAVYIYHPPKASDSFGRGTVCLSSQVG 205

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNI 182
           CSL C FC TGT  + RNL A EI+ Q++  +  L DFP     E     S+ +  ++NI
Sbjct: 206 CSLNCKFCRTGTAPIERNLLASEIVSQLVSVKHRLMDFPIYMTEEERKRASIEKSFVNNI 265

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V MG GEPL N+ NVKK++ I SD  G   SKR+I +STSG    I  V  ++GV LAIS
Sbjct: 266 VFMGEGEPLYNYKNVKKAIEILSD--GCGISKRKIIVSTSGVCNLIPDVVNDLGVNLAIS 323

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA +N+LR+ +VPIN+ +PLE+L +  R     +N R ITFEYVML  +ND   DA  L
Sbjct: 324 LHATTNELRDNIVPINKIFPLEVLFETLREQCFKNNNRHITFEYVMLNHVNDFIDDAKRL 383

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +K++K IP  +NLI FN W G  + CS  + I  FS+ + ++G S+P+R  +G DIL AC
Sbjct: 384 VKLVKDIPCSVNLIAFNEWEGSGFECSSDERIEEFSKYLYKNGISAPVRHSKGQDILGAC 443

Query: 363 GQLKSLSKRIPKVPRQEMQ 381
           GQLK+ ++      +Q  Q
Sbjct: 444 GQLKNRNENKAGALQQTEQ 462


>gi|116515112|ref|YP_802741.1| YfgB [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285492|sp|Q057Q1|RLMN_BUCCC RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|116256966|gb|ABJ90648.1| putative pyruvate formate lyase activating enzyme [Buchnera
           aphidicola str. Cc (Cinara cedri)]
          Length = 359

 Score =  341 bits (876), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 143/363 (39%), Positives = 206/363 (56%), Gaps = 20/363 (5%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK +L+    +++    +KIG      + R  QI  WIY +    F  MS+++  ++  L
Sbjct: 13  KKINLLNFNLKKMINFFIKIG----EKKFRAIQITDWIYKKQNIKFDQMSNLNFFLKKKL 68

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           N    I  P+ + +  S DGT KW        +     IET+YIPEK R TLC+SSQVGC
Sbjct: 69  NNIAVIKIPKCIKKIKSIDGTIKWKF------LCNKEFIETIYIPEKKRATLCISSQVGC 122

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            L C+FC TG     RNL   EI+ Q+             +  +          I NIVM
Sbjct: 123 QLKCNFCATGQLGYKRNLLVSEIIGQIWYV--------INKIKKYNSKKKNFPPIKNIVM 174

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N  N+  ++ I   + G +FSK ++TLSTSG VP I ++  +I + LA+SLH
Sbjct: 175 MGMGEPLLNLKNIIIAIDIILGNYGFNFSKNKVTLSTSGIVPAINKIAGKIDISLAVSLH 234

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302
           A +N +RN ++PIN+ Y +++L+++ ++Y   S+A +  +T EYVML  IND    A+ L
Sbjct: 235 ASNNTIRNKIMPINKIYNIQLLLESIKNYLKKSSANKGIVTIEYVMLSKINDFQHHAIEL 294

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             +LK IP KINLIP+NP     Y+CS  K+I+ F+  +++ G+   IR  RG DI AAC
Sbjct: 295 SNLLKNIPCKINLIPWNPIKNSSYICSSSKNIINFANFLRKKGFIVIIRKNRGSDIQAAC 354

Query: 363 GQL 365
           GQL
Sbjct: 355 GQL 357


>gi|291556918|emb|CBL34035.1| radical SAM enzyme, Cfr family [Eubacterium siraeum V10Sc8a]
          Length = 345

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 107/365 (29%), Positives = 185/365 (50%), Gaps = 35/365 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQ---IWKWIYVRGIRDFQGMSDISQEVRHL 63
             +  +  E+ E+ L + G        R +Q   I++ IY R    F  M+  S +++ L
Sbjct: 2   TDIYSLTYEQAEKLLTENG-------FRATQCANIFRDIYKRRASGFDEMTLTSADIKAL 54

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+  +     +I +   S D T K+L      C     ++ETV + +K   ++C+S+Q G
Sbjct: 55  LSDKYFFGKLKIDEILQSVD-TSKYLFELSDGC-----KVETVLMRQKFGNSICISTQSG 108

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC +G  +  R+LTA E++ Q+L                          ISN  
Sbjct: 109 CNMGCKFCCSGRLRKQRDLTAGEMVSQILAVEKHQ-----------------NITISNTT 151

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  N+D +   L I +   G+    + IT+ST G    +    E +    LA+S
Sbjct: 152 VMGIGEPFDNYDALCDFLDIVTVPGGIETGTKHITVSTCGLCDKMKLFAERKEPCNLAVS 211

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +++RN L+P+NR+Y +  +I++ ++Y   +N  ++  EY++L GINDS  +A  L
Sbjct: 212 LHAPDDEIRNRLMPVNRRYSISQVIESAKYYVERTNR-KVLLEYILLDGINDSRENARQL 270

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++      +NLIP+NP    E+  S +++I  F + +K++  +   R   G ++ AAC
Sbjct: 271 AALIGNARLFVNLIPYNPSHDSEFKRSSEENITAFYDELKKNRINVTRRKEFGTELSAAC 330

Query: 363 GQLKS 367
           GQL+S
Sbjct: 331 GQLRS 335


>gi|296127640|ref|YP_003634892.1| radical SAM enzyme, Cfr family [Brachyspira murdochii DSM 12563]
 gi|296019456|gb|ADG72693.1| radical SAM enzyme, Cfr family [Brachyspira murdochii DSM 12563]
          Length = 342

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 130/369 (35%), Positives = 208/369 (56%), Gaps = 34/369 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S++ +  E+L +   +   P    +   SQ+  WIY +    F+ MS+I + +R LL
Sbjct: 3   KKISIMNVSEEDLSKFCEENNFP----KFHASQVLDWIYKKYAVSFEDMSNIPKNLRALL 58

Query: 65  NQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           ++++ I   +I  E IS D  GT+K L+    +      +IE+V + +K R T C+SSQV
Sbjct: 59  DENYFIHNSKI--ETISEDEYGTKKLLISLYDKK-----KIESVILQKKDRVTFCLSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC   C+FC TG+  L RNLTA+EIL + +L R++                   +K+++I
Sbjct: 112 GCGYGCAFCATGSMGLSRNLTADEILAEFILMRAVT------------------KKVNSI 153

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N  N+ K++   +   G +   R IT+STSG V  I ++ E ++   LA+
Sbjct: 154 VFMGMGEPLANTKNLFKAIETINSFKGFNLGIRHITISTSGEVVGIKQLIEKDLDCRLAV 213

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH++ N++R+ ++PIN++YP+E L+   + Y   +  R ITFE+V++K +NDS  DA  
Sbjct: 214 SLHSLKNEVRDKIMPINKRYPIENLMAVLKRY-SKNGKRMITFEWVLIKDVNDSVNDAYR 272

Query: 302 LIKILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           L+ + K  P K+N+IP NP     +    ++  I+ F   +K +G     R  +G +ILA
Sbjct: 273 LVNLKKEFPFKVNVIPMNPVEHAPHLQRPNKDIILRFKSILKDNGIEVVERFKQGQEILA 332

Query: 361 ACGQLKSLS 369
            CGQL   +
Sbjct: 333 GCGQLAVKN 341


>gi|167751032|ref|ZP_02423159.1| hypothetical protein EUBSIR_02017 [Eubacterium siraeum DSM 15702]
 gi|167655950|gb|EDS00080.1| hypothetical protein EUBSIR_02017 [Eubacterium siraeum DSM 15702]
          Length = 345

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 107/365 (29%), Positives = 183/365 (50%), Gaps = 35/365 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQ---IWKWIYVRGIRDFQGMSDISQEVRHL 63
             +  +  E+ E+ L + G        R +Q   I++ IY R    F  M+  S +++  
Sbjct: 2   TDIYSLTYEQAEKLLTENG-------FRATQCANIFRDIYKRRASGFDEMTLTSADIKAF 54

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L+  +     +I +   S D T K+L      C      +ETV + +K   ++C+S+Q G
Sbjct: 55  LSDKYFFGKLKIDEILQSVD-TSKYLFELSDGC-----RVETVLMRQKFGNSICISTQSG 108

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC +G  +  R+LTA E++ Q+L                          I NI 
Sbjct: 109 CNMGCKFCCSGRLRKQRDLTAGEMVSQILAVEKHQ-----------------NITIGNIT 151

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG+GEP  N+D +   L I +   G+    + IT+ST G         E +    LA+S
Sbjct: 152 VMGIGEPFDNYDALCDFLDIVTVPGGIETGTKHITVSTCGLCDKTKLFAERKEPCNLAVS 211

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +++RN L+P+NR+Y +  +I++ ++Y   +N  ++  EY++L GINDS  +A  L
Sbjct: 212 LHAPDDEIRNRLMPVNRRYSISQVIESAKYYVERTNR-KVLLEYILLDGINDSRENARQL 270

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             ++      +NLIP+NP P  E+  S +++I  F + +K++  +   R   G ++ AAC
Sbjct: 271 AALIGNARLFVNLIPYNPSPDSEFKRSSEENITAFYDELKKNRINVTRRKEFGTELSAAC 330

Query: 363 GQLKS 367
           GQL+S
Sbjct: 331 GQLRS 335


>gi|189346924|ref|YP_001943453.1| radical SAM enzyme, Cfr family [Chlorobium limicola DSM 245]
 gi|254807162|sp|B3ED49|RLMN_CHLL2 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|189341071|gb|ACD90474.1| radical SAM enzyme, Cfr family [Chlorobium limicola DSM 245]
          Length = 361

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 182/371 (49%), Gaps = 30/371 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            ++    + EL  A+  +G P      R +Q+ +W++    R F  ++ I+  +R  L+ 
Sbjct: 6   PNIKDFTKPELIRAITSLGEPA----YRAAQLHQWLFSHRTRSFDDITIINLALRQKLSS 61

Query: 67  HFSIIYPEIVD-EKISCDG----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            +SI    + D  +   D     T K+L+R           +E V IP ++R T C+SSQ
Sbjct: 62  IYSIRTATLDDCRQEYRDDHEIPTTKFLVRMHDD-----ETVEAVLIPAENRITACISSQ 116

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GCSL CSFC TG     RNLT+ E+  QV L    L +               G+ I+N
Sbjct: 117 AGCSLHCSFCATGKTGFRRNLTSGEMTDQVFLLNDHLAE-------------HYGQTITN 163

Query: 182 IVMMGMGEPLCNFDNVKKSLSIA-SDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VML 239
           IV MGMGEPL N  +V  ++    + +   S S+R+I++ST+G +P I  +      V L
Sbjct: 164 IVFMGMGEPLLNMTHVLDAIETLSNHNYRYSLSQRKISISTAGIIPQIDLLARLPHKVKL 223

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+     R  ++P  R+YPL  L  +   Y  LS  + +T  Y++L+ INDSP DA
Sbjct: 224 AVSLHSAIQTNRESIMPAAREYPLPALKKSLAEYNRLS-GQPVTLVYMLLRDINDSPEDA 282

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+K  K +  KINLI +N     ++          F   +  SG    +R   G  I 
Sbjct: 283 KALVKFAKSLFCKINLIDYNAIVNIKFKPVYTGKSELFLRSLLDSGLQVTVRKSHGASIN 342

Query: 360 AACGQLKSLSK 370
           AACGQL + S+
Sbjct: 343 AACGQLVTESR 353


>gi|225871755|ref|YP_002753209.1| radical SAM enzyme, Cfr family [Acidobacterium capsulatum ATCC
           51196]
 gi|225791340|gb|ACO31430.1| radical SAM enzyme, Cfr family [Acidobacterium capsulatum ATCC
           51196]
          Length = 396

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 136/392 (34%), Positives = 194/392 (49%), Gaps = 57/392 (14%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-N 65
             L G+  EEL EAL    +P      R  Q+   +Y +    +  ++ + QE+R  L  
Sbjct: 25  RPLFGLSFEELSEALADFRLPPW----RLRQVRHALYRQWAASWSEVTTLPQELRESLEK 80

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-------------- 111
             F+   P IV+   S DGT ++L+            +ETV++P                
Sbjct: 81  AGFAPGLPGIVETFRSVDGTERYLI-----AGHDGQTVETVWMPGGDGGEAGDGSGSDGA 135

Query: 112 --------------SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
                          R T+CVSSQ+GC++ C FC T    ++RNLTA EI  QV+     
Sbjct: 136 GDDRPGEDSGEAAYQRATICVSSQIGCAVNCQFCLTARLGIIRNLTAGEIAGQVVAVLK- 194

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
                            +GR   N+V MGMGEP  N+D    ++ + SD +G+  S  R+
Sbjct: 195 ------------RQQVEMGRDRINLVFMGMGEPFLNYDAFMDAVRLLSDEVGIPVS--RM 240

Query: 218 TLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           T+STSG VP I R  EE     LAISL+A  + +R  ++PINRK+ +  ++DA R  P L
Sbjct: 241 TVSTSGIVPGILRFAEEPVRPKLAISLNAPDDIVREAVMPINRKWDIAEVLDAVRKVP-L 299

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDI 334
               R+TFEYV+L G+ND P  A  + ++L+   +P K+NLI +NP P   Y     +D+
Sbjct: 300 RAKERVTFEYVLLGGVNDQPEHAETVARLLRRANLPLKVNLIVWNPGPDVPYTMPKAEDV 359

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             F E +   G  + IR PRG DI AACGQLK
Sbjct: 360 AAFQEYLVGKGVPAYIRRPRGRDIYAACGQLK 391


>gi|304440677|ref|ZP_07400561.1| cfr family radical SAM enzyme [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370864|gb|EFM24486.1| cfr family radical SAM enzyme [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 342

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 111/362 (30%), Positives = 178/362 (49%), Gaps = 34/362 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           +  +  EE++  + +IG      + R  Q++ +       D    S++ ++++ L     
Sbjct: 3   INDLTFEEMKSYIEEIG----EKKFRAQQLFTFFNKNKKWDLNSSSNLPKDLKSL----- 53

Query: 69  SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            +   +I +E  S  D T K+L       +     IE V +  +   + C+S+QVGC + 
Sbjct: 54  PVREIKIFEEYHSKIDETVKFLFELNDGNL-----IEGVLLKYEHGYSQCISTQVGCRMG 108

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC +     +RNLT  E+  Q+ L  +                  +G  ISNIV+MG 
Sbjct: 109 CSFCASTKGGRIRNLTPSEMAGQIYLVEN-----------------KLGINISNIVLMGS 151

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAV 246
           GEPL N++NV K   I  D  G + S R IT+S+ G VP I  + + +  + LAISLH+ 
Sbjct: 152 GEPLDNYENVIKFFDIIHDENGKNLSNRSITISSCGIVPRIYDLEKLKKPINLAISLHSP 211

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++ R  ++PI  +Y +E ++ A ++Y   +   RIT EY ++K +ND   DA  LI+I 
Sbjct: 212 FDEDRKKIMPITNRYSIEEVLAASKYYSEGT-GTRITLEYTLIKDVNDREIDADELIRIT 270

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           K I   +NLIP NP        +  K    F   + + G ++ IR   G DI A+CGQL+
Sbjct: 271 KDIKVHVNLIPLNPIKEYNKGKTSPKGAKKFQNMLLKGGINATIRRELGSDISASCGQLR 330

Query: 367 SL 368
             
Sbjct: 331 RK 332


>gi|224003697|ref|XP_002291520.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973296|gb|EED91627.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 343

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 125/349 (35%), Positives = 188/349 (53%), Gaps = 33/349 (9%)

Query: 29  RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88
           ++   R  QI  WI+ +G+     MSD+  ++R +L +  ++    +  E++S DGTRK 
Sbjct: 17  KYPAFRARQIHNWIFSQGVTSIDDMSDLPLKLRTMLKERATVGSLHLEVEQVSQDGTRKR 76

Query: 89  LLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
             +           IE+V +P +  R T CVSSQ GC++ C FC TG     R LT++EI
Sbjct: 77  AYKLHD-----GQMIESVLMPYEDGRRTACVSSQAGCAMGCVFCATGQMGFARQLTSDEI 131

Query: 148 LLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
             QV   A  L G+               G ++SN+VMMGMGEPL N+ NV  ++   + 
Sbjct: 132 FEQVATFANELKGE---------------GERLSNVVMMGMGEPLANYRNVLAAMHRMNT 176

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKY-PLE 264
              L    R+IT+ST G VPNI ++ EE + V LA+SLH  +++ R  L+P NR+Y  L+
Sbjct: 177 D--LGIGARKITISTVGVVPNIKKLIEEDLQVRLALSLHCATDEERTALLPANRRYGGLD 234

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFN 319
            L+   R Y  +    R+TFE+ +++G NDS   A  L ++L+        A +NLIP N
Sbjct: 235 ELMTTIREYIRVK-KMRVTFEWALIEGQNDSKDVARTLGRLLQKHDIRPDMAHVNLIPLN 293

Query: 320 PWPGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAACGQLKS 367
           P  G     S + ++  F E +++  G S+  R  RG+DI A CGQLK+
Sbjct: 294 PTGGYGGGPSGRNNVHRFVEVLEKEFGISATPRMRRGIDIDAGCGQLKA 342


>gi|225619727|ref|YP_002720984.1| putative Fe-S-cluster redox enzyme [Brachyspira hyodysenteriae WA1]
 gi|225214546|gb|ACN83280.1| Predicted Fe-S-cluster redox enzyme [Brachyspira hyodysenteriae
           WA1]
          Length = 342

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 133/369 (36%), Positives = 209/369 (56%), Gaps = 34/369 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S++ +  +EL +  ++   P    +   SQI  WIY +    F+ MS+I + +R+LL
Sbjct: 3   KKISIMNVSEDELSKFCVENNFP----KFHASQILNWIYKKYAVSFEEMSNIPKNLRNLL 58

Query: 65  NQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           ++++ I   +I  E IS D  GT+K L+    +      +IE+V + +K R T C+SSQV
Sbjct: 59  DEYYFIHNSKI--ETISEDEYGTQKLLISLYDKK-----KIESVILNKKDRVTFCLSSQV 111

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC   C+FC TG+  L RNLTA+EIL + LL R++                   +K+++I
Sbjct: 112 GCGYGCAFCATGSMGLSRNLTADEILAEFLLMRAVT------------------KKVNSI 153

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N  N+ K++   +   G +   R IT+STSG V  I ++ E ++   LA+
Sbjct: 154 VFMGMGEPLANTKNLFKAIDTINSFKGFNLGIRHITISTSGEVAGIKQLIERDLDCRLAV 213

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH++ ND+R+ ++PIN++YP+E L+   + Y   +  R ITFE+V++K +NDS  DA  
Sbjct: 214 SLHSLKNDVRDKIMPINKRYPIENLMAILKRY-SRNGKRMITFEWVLIKDVNDSVNDAYR 272

Query: 302 LIKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           L+ + K  P K+N+IP NP          ++  I+ F   +K +G     R  +G +ILA
Sbjct: 273 LVNLKKEFPFKVNVIPMNPVEHAPELQRPNKDIILRFKSILKDNGIEVVERFKQGQEILA 332

Query: 361 ACGQLKSLS 369
            CGQL   +
Sbjct: 333 GCGQLAVKN 341


>gi|320106559|ref|YP_004182149.1| radical SAM enzyme, Cfr family [Terriglobus saanensis SP1PR4]
 gi|319925080|gb|ADV82155.1| radical SAM enzyme, Cfr family [Terriglobus saanensis SP1PR4]
          Length = 420

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 129/416 (31%), Positives = 192/416 (46%), Gaps = 75/416 (18%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L GM   EL E +   G        R  Q+W  +Y + +     ++ +   +R  L
Sbjct: 23  QKIALFGMALPELIERMGAWG----EKPYRARQVWDALYKQRVAALDEITVLPLALRERL 78

Query: 65  N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----------- 112
             +   I  PE+V    S DGT ++L+R           +ETV++P+             
Sbjct: 79  ATEGVEIGLPEMVQTATSVDGTERYLMRMVD-----GETVETVWMPDGDGGERGDGSEAA 133

Query: 113 -------------------------------------RGTLCVSSQVGCSLTCSFCYTGT 135
                                                R T+C+SSQVGC++ C FC T  
Sbjct: 134 VEESDEVVTADEAVDKTNGYKKPDKRNWGALAEKGYRRATICISSQVGCAVNCQFCLTAK 193

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             + RNLTA EI  QV                       +G+   N+V MGMGEP  N+D
Sbjct: 194 LGIKRNLTAGEIAGQVAAV-------------LNRHSVKMGKDRINLVFMGMGEPFLNYD 240

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNIL 254
               S+ +  +  G+     R+T+STSG  P+I R   E +   LA+SL+A ++ +R  +
Sbjct: 241 AFMDSVRLLVE--GVGIPDSRMTVSTSGIEPSIRRFATETVRPKLALSLNASNDAVRTEI 298

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
           +PI +K+ + ML+DA +  P       +TFEYVML G+ND P+ A  ++ +LKG+ AK+N
Sbjct: 299 MPITKKWNIAMLLDAVKTIPMGKRDW-VTFEYVMLGGVNDQPQHAREVLALLKGMHAKVN 357

Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           LI +NP PG  Y   D   +  F + +   G  + IR PRG DI AACGQLK   +
Sbjct: 358 LIVWNPGPGIAYSQPDPDAVAVFQKMMIDGGMPTYIRRPRGRDIYAACGQLKRTVQ 413


>gi|78779958|ref|YP_398070.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str.
           MIT 9312]
 gi|123768932|sp|Q318R1|RLMN_PROM9 RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|78713457|gb|ABB50634.1| 23S rRNA m(2)A-2503 methyltransferase [Prochlorococcus marinus str.
           MIT 9312]
          Length = 348

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 180/374 (48%), Gaps = 39/374 (10%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64
           ++L+G   ++LE   L  G        R  QI+ WIY      ++   +  +  + R  L
Sbjct: 2   KNLLGSSIKDLENIALDYG----QAAFRGRQIYSWIYNYRNKNKNIDQIEVLPLDFRKKL 57

Query: 65  NQ-HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
               F +      ++K++ DGT K LL            IE V IP + R T C+SSQVG
Sbjct: 58  KDDGFKVSELSFQEKKLANDGTLKLLLSTNDN-----ESIECVGIPTEKRLTACLSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG + L R+L A EIL Q+L   +                  + RK++NIV
Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIEN-----------------EMNRKVTNIV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236
            MGMGEPL N D +  S+   ++      S+R+IT+ST      ++++            
Sbjct: 156 FMGMGEPLLNIDELLLSIRSINED--FQISQRKITVSTVAVPKMMSKLSARSFQILGNCQ 213

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             LAISLHA +   R  ++P  + Y ++ +I+  + +   +   R++FEY+ML G+ND  
Sbjct: 214 FTLAISLHASNQKTRETIIPSAKNYEIKNIIEDSKQFVKDTGR-RVSFEYLMLSGVNDKL 272

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
             A  L  +L+G    +NLI +N     E+  +  K++  F   +  +G +   R  RGL
Sbjct: 273 EHANELSNLLRGFQCHVNLIQYNQIDEVEFKRASLKNLQLFQSRLSNNGITVSFRKSRGL 332

Query: 357 DILAACGQLKSLSK 370
           D  AACGQL+  ++
Sbjct: 333 DKNAACGQLRQNAR 346


>gi|300871714|ref|YP_003786587.1| putative Fe-S cluster redox enzyme [Brachyspira pilosicoli 95/1000]
 gi|300689415|gb|ADK32086.1| predicted Fe-S cluster redox enzyme [Brachyspira pilosicoli
           95/1000]
          Length = 342

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 128/368 (34%), Positives = 205/368 (55%), Gaps = 30/368 (8%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S++ +  E+L +  ++   P    +   SQI  WIY +    F  MS+I +++R LL
Sbjct: 3   KKISIMNVSEEDLSKFCIENNFP----KFHASQILNWIYKKYAISFDEMSNIPKDLRVLL 58

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++++ I   +I        GTRK L+    +      +IE+V + +  R T C+SSQVGC
Sbjct: 59  DENYFIHNSKIESITEDEYGTRKLLISLYDKK-----KIESVILGKNDRVTFCLSSQVGC 113

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
              C+FC TG+  L RNLTA+EIL + +L R++                   +K+++IV 
Sbjct: 114 GYGCAFCATGSMGLSRNLTADEILAEFILMRAVT------------------KKVNSIVF 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MGMGEPL N  N+ K++   +   G +   R IT+STSG V  I ++ E ++   LA+SL
Sbjct: 156 MGMGEPLANTKNLFKAIDTINSYKGFNLGIRHITISTSGEVAGIKQLIERDLDCRLAVSL 215

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H++ N++R+ ++PIN++YP+E LI+  + Y   +  R ITFE+V++K +NDS  DA  L+
Sbjct: 216 HSLKNEVRDKIMPINKRYPIENLINILKRY-SKNGKRMITFEWVLIKDVNDSVNDAYRLV 274

Query: 304 KILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            + K  P K+N+IP NP          ++  I+ F   +K +G     R  +G +ILA C
Sbjct: 275 NLKKEFPFKVNIIPMNPVEHAPELQRPNKDIILRFKSILKDNGIEVVERFKQGQEILAGC 334

Query: 363 GQLKSLSK 370
           GQL   ++
Sbjct: 335 GQLAVKNQ 342


>gi|309800813|ref|ZP_07694945.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium dentium
           JCVIHMP022]
 gi|308222349|gb|EFO78629.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium dentium
           JCVIHMP022]
          Length = 407

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 184/370 (49%), Gaps = 31/370 (8%)

Query: 6   KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           K  L    M  +E      ++G+P    R R  Q+    Y     D +  SD     R  
Sbjct: 38  KPPLHFADMSEDERIAKAKELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAE 93

Query: 64  LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
             + F       V  +++ +GT  K L R     +     IE+V +   +R TLC+SSQV
Sbjct: 94  AAEAFFPTLITEVTRQVADEGTTIKTLWRLFDGSL-----IESVLMRYPTRTTLCISSQV 148

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC TG   L RN++A EI+ QV +A   + D           +     ++SNI
Sbjct: 149 GCGMGCPFCATGKLGLTRNMSAGEIVEQVRVAAKAMRD---------GEVAGGPGRLSNI 199

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           V MGMGEP+ N+ +V  ++   S     G   S R IT+ST G VP I ++  E I V L
Sbjct: 200 VFMGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 259

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA S++LR+ LVP+N+++ +  ++DA   Y  L++ RR++ EY +++GIND    A
Sbjct: 260 AVSLHAPSDELRDELVPMNKRFDITQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 318

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR-G 355
             L K L       A +N IP NP  G ++  S  +D   F + + + G+    R PR G
Sbjct: 319 RLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLDILHQGGHRHLARHPRAG 378

Query: 356 LD--ILAACG 363
               + AACG
Sbjct: 379 YRWCLRAACG 388


>gi|301167567|emb|CBW27150.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 366

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 195/366 (53%), Gaps = 21/366 (5%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            S      EEL   L + G  Q+       +I++ +Y R   +F+ +  +S+     ++ 
Sbjct: 21  HSFYNQSLEELSHTLHESGFKQKS----ADEIFRLVYKRFNPNFEAVDTLSRRTIDFISN 76

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           H+    P+IV  + + D T K+L+           ++E+V IP   + T+C+SSQVGC++
Sbjct: 77  HYRFDLPKIVKVQNADDNTVKFLVEL-----ADGNQVESVLIPFAKKYTICLSSQVGCAM 131

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            CSFC+TG Q L RNL A EI+ Q ++A   L +    +               NIV MG
Sbjct: 132 KCSFCFTGLQGLKRNLEASEIIGQYIVAYKWLRENRPEKIASP-----------NIVFMG 180

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
            GEPL NFD VKK++ I   + GL    R+ITLST+G++P + R  E   + LA+SLH+ 
Sbjct: 181 QGEPLHNFDQVKKAIEIFLTTEGLHLGFRQITLSTAGYLPGLERFSELPNINLALSLHSP 240

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ++ RN L+P+N++Y LE L +       L     IT+EY+++K +ND   D   L K L
Sbjct: 241 IDEDRNKLIPLNKRYSLEKLFEKLDQIKLLKRQF-ITYEYLLIKDLNDRDEDITLLNKWL 299

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
               A IN+IPFN +PG  Y       +  F   ++R G +  +RT +G DILAACGQL 
Sbjct: 300 GQRRAIINIIPFNEFPGAPYKRPLTSKVNEFKTKLERLGLTVKVRTTKGSDILAACGQLN 359

Query: 367 SLSKRI 372
           +L  + 
Sbjct: 360 TLQSKT 365


>gi|303280559|ref|XP_003059572.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459408|gb|EEH56704.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 406

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 188/377 (49%), Gaps = 37/377 (9%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL- 64
           +  L+G+  + L +   + G P      R  Q+   +Y       + ++ I +  R  L 
Sbjct: 53  RTPLLGLGVDALTKLAKEHGQPG----YRGKQLHDAVYSHRKEAIEAITQIPEAFRSSLR 108

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                +     +D   + DGT+K LL+     +     IE V    + R T+CVSSQVGC
Sbjct: 109 ASGVHVGRVRPIDVVAAPDGTKKVLLKLRCGSV-----IEAVGETRRRRFTVCVSSQVGC 163

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ CSFC TG Q   RNLT++EI+ QVL    + G                 R+ +N+VM
Sbjct: 164 AMRCSFCATGRQGFKRNLTSDEIVNQVLALEDVFG-----------------RRATNVVM 206

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISL 243
           MGMGEPL N   V ++    +  +G     R  T+ST G    ++++   ++   LA+SL
Sbjct: 207 MGMGEPLMNLKEVLRAHRCLNRDVG--IGGRYFTISTVGVPNQLSKLAAHKLQATLAVSL 264

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA + +LR  L+P  + Y ++ L++ CR Y   S  +R+TFEY +L G NDSP  A  L 
Sbjct: 265 HAPTQELREKLIPSAKAYHVDDLLEDCRLY-KKSTGKRLTFEYTLLAGENDSPEHARALG 323

Query: 304 KILK---GIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECI-KRSGYSSPIRTPRGLD 357
           ++L+   G  + +NL+P+NP  G E  +    +  +  F++ + K  G +  +R  RGL+
Sbjct: 324 RLLRTRVGRGSHVNLLPWNPVTGAEDAHARPSKTAVKRFADALAKERGVTFTVRRTRGLE 383

Query: 358 ILAACGQLKSLSKRIPK 374
             AACGQL     R  +
Sbjct: 384 ADAACGQLTGSFVRKGR 400


>gi|116328894|ref|YP_798614.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330499|ref|YP_800217.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122281743|sp|Q04UG1|RLMN_LEPBJ RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|122283323|sp|Q04Z14|RLMN_LEPBL RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|116121638|gb|ABJ79681.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124188|gb|ABJ75459.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 351

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 176/367 (47%), Gaps = 31/367 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K  L G   +EL E ++ +G        R  QI+  +YV     ++  +  S+ ++  L 
Sbjct: 13  KIPLKGRTLKELSEIMVSLG----EKSFRAKQIYHGLYVNRYESWEQFTTFSKTLKEKLE 68

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVG 123
              S+    +V    S DGT+K+             E E V+IP     R T+C+SSQVG
Sbjct: 69  GLCSLTQLTVVKHLKSVDGTQKFTF-----ASEQGKEFEAVWIPSGDGGRKTICISSQVG 123

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C FC T   +   NL A EI+ QVL    ++GD                   +N+V
Sbjct: 124 CTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDNA-----------------TNVV 166

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
            MGMGEP  N+ NV ++ SI  D   L+   +RIT+STSG V  I R  E +     AIS
Sbjct: 167 FMGMGEPFHNYFNVIRAASILHDPDALNLGAKRITISTSGVVNGIRRFIENKEPYNFAIS 226

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L+    + R  ++ I  K+ L  L+ A + +      RRITFEYVM+ G++  P +A  L
Sbjct: 227 LNHPDPNGRLQIMDIEEKFALSELLQAAKDF-TRELKRRITFEYVMIPGVSMGPENANKL 285

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +KI + +  KIN+IP N      +    ++++  F   ++ +G     R   G DI  AC
Sbjct: 286 VKIARSLDCKINVIPLN-TEFFGWRRPTKQEVAEFITLLEPAGVPILNRRSPGKDIFGAC 344

Query: 363 GQLKSLS 369
           G L S S
Sbjct: 345 GMLASKS 351


>gi|300087157|ref|YP_003757679.1| Cfr family radical SAM protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299526890|gb|ADJ25358.1| radical SAM enzyme, Cfr family [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 356

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 192/373 (51%), Gaps = 21/373 (5%)

Query: 4   LKKE-SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
           ++K  +L+ +  E +   L+ IG            I + ++          S + + ++H
Sbjct: 1   MEKTVNLLDLSPEGIASFLVSIGEKPV---FTGK-IIRHLFECRNTIIDEPSYLPESLKH 56

Query: 63  LLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            L Q       E+++E  S DG   K L             +E      K R T+CVSSQ
Sbjct: 57  KLRQISGHAALEVLEESKSVDGKNIKTLFGLDDGNTIESTAMEFGGSAGKIRRTVCVSSQ 116

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C +C TG     RNL+  E++ QVL  R   G                   ++N
Sbjct: 117 VGCMIGCPYCATGMNGFHRNLSPGEMIEQVLYYRGETG-------------RVGRNSLTN 163

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
           +V MGMGEPL N+DNV  ++S+ +   G+ F  R+IT+STSG VP I R+  E++   LA
Sbjct: 164 VVFMGMGEPLLNYDNVVTAVSLLNSHHGMGFGARQITISTSGIVPGILRLAREDLYCQLA 223

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +S+ + +++LRN+LVP+NRKYPL  LI+ACR Y  L+  R++  EYV+ +G+NDS +DA 
Sbjct: 224 VSIQSATDELRNLLVPVNRKYPLAHLIEACREYSELT-RRKVFIEYVLFEGVNDSIQDAE 282

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
            L K+L+ +   INLI  N      +  +    +V F   +   G+ + +R  RG DI A
Sbjct: 283 GLAKLLEPLDCSINLIIVNNSGIGTFRPTSYDTVVAFQRLLVSKGFRTMLRLSRGTDIEA 342

Query: 361 ACGQLKSLSKRIP 373
            CGQL++   RI 
Sbjct: 343 GCGQLRNRRLRIT 355


>gi|299143975|ref|ZP_07037055.1| radical SAM enzyme, Cfr family [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518460|gb|EFI42199.1| radical SAM enzyme, Cfr family [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 349

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 189/364 (51%), Gaps = 30/364 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           +  +  +E+E  +   G        R  Q++ + + +   D +  S++ + +   + ++ 
Sbjct: 4   INNLYLDEIENKVKFYG----EKNFRAMQLYNFFHKQKRTDIEN-SNLPKSLITKILEYE 58

Query: 69  SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I    I++E  S  D T+K+L +   + I     +E V +  K   + C+S+QVGC + 
Sbjct: 59  KIQTVSILEEYSSKLDETKKFLFKLEDKNI-----VEGVLMKYKHGYSQCISTQVGCRMG 113

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +  + L+RNL+A E+L QV                           +SNI++MG 
Sbjct: 114 CVFCASTKEGLIRNLSAYEMLGQVYEVEK-----------------RFNINVSNIILMGS 156

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAV 246
           GEP  N+DNV + L +     G + S R IT+ST G V  I  +  E + + LAISLH  
Sbjct: 157 GEPFDNYDNVIRFLKLVHSKEGKNLSYRNITISTCGIVDKIYELSKENLPITLAISLHNT 216

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +N  R+ ++PIN+KY +E +I AC++Y  ++N+ RITFEY ++ G ND+  +A  L  ++
Sbjct: 217 NNISRDNIMPINKKYNIEQIIQACKNYSNMTNS-RITFEYTLIGGQNDTLENAQELKSLI 275

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            G+ A INLIP NP         +QK++  F + ++    +  IR   G DI+A+CGQL+
Sbjct: 276 NGLKAHINLIPLNPIKEYNKKRPNQKEVEDFKKKLEALKLNVTIRRELGADIMASCGQLR 335

Query: 367 SLSK 370
              +
Sbjct: 336 RKYE 339


>gi|325474464|gb|EGC77651.1| ribosomal RNA large subunit methyltransferase N [Treponema
           denticola F0402]
          Length = 347

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 189/371 (50%), Gaps = 33/371 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L GM  EE++      G+ +   + R  QI+ WI   G+  F  M+++S ++R  L 
Sbjct: 7   KTALSGMFPEEIQSFC---GLKE---KFRAQQIFHWI-ASGVNSFDEMTNLSFDMRSKLK 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGC 124
             FS+   +I +     DGT K  +      +     IETV + +K  R T CVS Q GC
Sbjct: 60  NDFSLFSTKIKEALKDKDGTIKLAVELYDGSV-----IETVLLTDKAKRKTACVSCQAGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC TG    +RNL+A EI+ Q L      G                   + NIV 
Sbjct: 115 PMKCAFCKTGQIGFLRNLSASEIVEQFLHLEREAG------------------SLDNIVF 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISL 243
           MGMGEP+ N   + K+++I +   G + SKRRIT+STSG    I  + ++   V LA+SL
Sbjct: 157 MGMGEPMLNLPEIDKAINILAHPKGRNLSKRRITISTSGLCNGIYEMADKGPEVRLAVSL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
                 LR+ L+PIN+   L+ L  A +++   SN  R+T E  ++KG+N   + A  +I
Sbjct: 217 TTADETLRSELMPINKTNSLDELKQAIKYFNSKSNK-RVTLELALMKGLNTDKKAAQEVI 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +  KG+   INLIP+NP  G  +    + ++ TF   +K++G +   R  RG  I  ACG
Sbjct: 276 EFAKGLECFINLIPWNPVEGLNFKTPSETEVRTFETYLKKAGLNISTRQKRGQSIGGACG 335

Query: 364 QLKSLSKRIPK 374
           QL S + R  +
Sbjct: 336 QLGSTATRSNR 346


>gi|297184182|gb|ADI20301.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 302

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 112/319 (35%), Positives = 167/319 (52%), Gaps = 19/319 (5%)

Query: 53  MSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112
           M+++S+  R LLN HF     E+   + S DGT K  ++           +E+V IP + 
Sbjct: 1   MTNLSKATRELLNAHFEFKQLEVDVMQQSNDGTIKNAVKLHDGAF-----VESVLIPTEK 55

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R T CVSSQVGCSL C+FC T   K +RNL  +EI  QV++      +            
Sbjct: 56  RITACVSSQVGCSLDCTFCATAGLKRMRNLDPDEIYDQVVVIDRQGKE------------ 103

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
              GR ++NIV MGMGEPL N++NV  ++   +D  GL  S +RITLST G    I ++ 
Sbjct: 104 -HFGRPLTNIVFMGMGEPLLNYNNVLAAIDKITDPKGLGMSPKRITLSTIGVPKLIKKMA 162

Query: 233 EE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           ++ +   LAISLH+   + R  L+P+  +    + +     Y      R +TFEYV+ + 
Sbjct: 163 DDGVRFGLAISLHSAIEEKRAKLMPLAHRSTTLVDLRESLQYWYAKTGRGVTFEYVIWRD 222

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
           IND+  DA+ L K    IP K+N+I +NP     Y  + Q  +  +   ++     + +R
Sbjct: 223 INDTEEDAIALAKFCGAIPTKVNIIQYNPIDNGPYTQASQAAVDLYKRILEERRIIATVR 282

Query: 352 TPRGLDILAACGQLKSLSK 370
             RG DI AACGQL + ++
Sbjct: 283 HSRGQDIDAACGQLANKTE 301


>gi|42527577|ref|NP_972675.1| radical SAM protein [Treponema denticola ATCC 35405]
 gi|81570188|sp|Q73KZ3|RLMN_TREDE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|41818162|gb|AAS12586.1| radical SAM enzyme, Cfr family [Treponema denticola ATCC 35405]
          Length = 347

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 188/371 (50%), Gaps = 33/371 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L GM  EE++      G+ +   + R  QI+ WI   G+  F  M+++S ++R  L 
Sbjct: 7   KTALSGMFPEEIQSFC---GLKE---KFRAQQIFHWI-ASGVNSFDEMTNLSFDMRSKLK 59

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGC 124
             FS+   +I +     DGT K  +      +     IETV + +K  R T CVS Q GC
Sbjct: 60  NDFSLFSTKIKEALKDKDGTIKLAVELYDGSV-----IETVLLTDKAKRKTACVSCQAGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC TG    +RNL+A EI+ Q L      G                   + NIV 
Sbjct: 115 PMKCAFCKTGQIGFLRNLSASEIVEQFLHLEREAG------------------SLDNIVF 156

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISL 243
           MGMGEP+ N   + K+++I +   G + SKRRIT+STSG    I  + ++   V LA+SL
Sbjct: 157 MGMGEPMLNLPEIDKAINILAHPKGRNLSKRRITISTSGLCKGIYEMADKGPEVRLAVSL 216

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
                 LR+ L+PI +   L+ L  A +++   SN  R+T E  ++KG+N   + A  +I
Sbjct: 217 TTADETLRSELMPITKTNSLDELKQAIKYFNSKSNK-RVTLELALMKGLNTDKKAAQEVI 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +  KG+   INLIP+NP  G  +    + ++ TF   +K++G +   R  RG  I  ACG
Sbjct: 276 EFAKGLECFINLIPWNPVEGLNFKTPSETEVRTFETYLKKAGLNISTRQKRGQSIGGACG 335

Query: 364 QLKSLSKRIPK 374
           QL S + R  +
Sbjct: 336 QLGSTAARSNR 346


>gi|108803293|ref|YP_643230.1| hypothetical protein Rxyl_0444 [Rubrobacter xylanophilus DSM 9941]
 gi|122976140|sp|Q1AYW0|RLMN_RUBXD RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|108764536|gb|ABG03418.1| conserved hypothetical protein [Rubrobacter xylanophilus DSM 9941]
          Length = 355

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 176/364 (48%), Gaps = 28/364 (7%)

Query: 14  REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73
             E+EE L + G P      R  Q++  +       +  ++ + + +R  L         
Sbjct: 19  LPEVEEVLAERGEPP----YRLRQVYAALAGSLASGWDEVASLPKGLREELAGRVPASVL 74

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
           E+     + DGTRK+L             IETV IPE+SR T+C+S+QVGC + C+FC T
Sbjct: 75  ELRRISRARDGTRKYLF-----FTRDGHAIETVMIPERSRRTVCISTQVGCPMACTFCAT 129

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   + RNL A EI  QV      +                   +++N+V+MGMGEP  N
Sbjct: 130 GLLGIKRNLKAREIAEQVFAVARDI----------------APERVTNVVVMGMGEPFLN 173

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRN 252
           +    ++L + +D  G + + R I +STSG V  I R  +E     LAISLH    + R 
Sbjct: 174 YRETLRALRVLNDRRGFNLAARHIAVSTSGLVDKIRRFADEPEQFHLAISLHTPFEEERR 233

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            L+P+  ++P+  L++A R+Y   +  R++ FEY +L G+ND  R A  L ++L      
Sbjct: 234 RLMPVAARHPIPELMNAARYYVERT-RRKLFFEYTLLAGVNDRMRHAEALAELLDHPLYH 292

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
           +NL+ FN W    +  +  +    F    +  G S+ +R  RG DI AACGQL +   R 
Sbjct: 293 LNLLRFN-WTDTGFSATSARRAKEFLRRARELGLSATLRPSRGQDIEAACGQLAARDARS 351

Query: 373 PKVP 376
           P   
Sbjct: 352 PTAR 355


>gi|169333679|ref|ZP_02860872.1| hypothetical protein ANASTE_00063 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259673|gb|EDS73639.1| hypothetical protein ANASTE_00063 [Anaerofustis stercorihominis DSM
           17244]
          Length = 342

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 183/366 (50%), Gaps = 35/366 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            +L G+    LEE    I    +  + R  QI+KW+Y   ++    M+++S  +R  L +
Sbjct: 2   TNLFGLN---LEEIEKIIVEEYKEPKFRAKQIFKWLYDSYVKSIDEMTNLSLSLREKLKE 58

Query: 67  HFSIIYPEIVDEKI---SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            + I + ++  +     S   T K+LL+     +     IE V +  ++  TLCVS+Q G
Sbjct: 59  EYYINHLKLEKKFKEEKSS--TTKFLLKTEDDIL-----IECVLLRYEAGATLCVSTQAG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +G   L+RNLT  EIL ++ L   +                    +ISNIV
Sbjct: 112 CRMGCVFCESGKCGLIRNLTKGEILNEIYLVSEI-----------------EDIRISNIV 154

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           +MG GEPL N+D V   L + +D   L+ SKR ITLST G    I  + +  + + LA+S
Sbjct: 155 LMGSGEPLDNYDEVVGFLKLVTDVNTLNMSKRSITLSTCGIKDKIYSLADSGLDINLALS 214

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +++R  ++PI +   +E ++DA  +Y   +   RIT+EY +++G ND+      L
Sbjct: 215 LHAPFHEMRESMMPIEKANNIEEVLDATFYYRSKTGR-RITYEYCLIEGKNDTIECIDKL 273

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
             + KG  + IN+I  N          + K I  F + ++  G +  IR   G  I AAC
Sbjct: 274 YDLFKGTDSLINVIGVN---DSSKKRVNDKYIHAFVDKLRNKGINVTIRRRLGSSINAAC 330

Query: 363 GQLKSL 368
           GQLKS 
Sbjct: 331 GQLKSR 336


>gi|269955985|ref|YP_003325774.1| radical SAM enzyme, Cfr family [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304666|gb|ACZ30216.1| radical SAM enzyme, Cfr family [Xylanimonas cellulosilytica DSM
           15894]
          Length = 389

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 163/371 (43%), Gaps = 26/371 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
                +   E   A+ ++G    H   R  Q+    +     D    +DI    R  +  
Sbjct: 34  RHFADLTHAERVAAVAELG----HQGFRAKQLATHYFAHYTTDPADWTDIPAAAREGMAA 89

Query: 67  HFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                         +  GT  K L             IE+V +    R TLC+SSQVGC 
Sbjct: 90  ALFPPLLTARRTLEADKGTTVKTLWGLHD-----GTRIESVLMRYPRRSTLCISSQVGCG 144

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG     RNL+A E+L QV LA            +    IP    +++N+V M
Sbjct: 145 MACPFCATGQLGFTRNLSAAEMLEQVRLAMR---------SLALGEIPGGPTRLNNLVFM 195

Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           G GE L N+  +   +         G   S R IT+ST G VP + ++  E + + LA+S
Sbjct: 196 GEGEGLINYRAIMTCIRTLVADAPEGFGMSARNITVSTVGLVPGMKKLAAEGLPLTLALS 255

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +DLR+ LVPIN ++ ++  +DA R Y   +   R++ EY ++K +ND    A  L
Sbjct: 256 LHAPDDDLRSELVPINTRFSVDEALDAARAYFEATGR-RVSIEYALIKDMNDHAWRADLL 314

Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
              L         +N IP NP PG  +  S++     F   ++  G  + +R  RG DI 
Sbjct: 315 GTKLNARGKGWVHVNPIPLNPTPGSIWTASERAVEDEFVARLRGHGIPTTVRDTRGSDID 374

Query: 360 AACGQLKSLSK 370
            ACGQL +  +
Sbjct: 375 GACGQLAAEEE 385


>gi|282882048|ref|ZP_06290689.1| radical SAM enzyme, Cfr family [Peptoniphilus lacrimalis 315-B]
 gi|281298078|gb|EFA90533.1| radical SAM enzyme, Cfr family [Peptoniphilus lacrimalis 315-B]
          Length = 348

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 112/361 (31%), Positives = 178/361 (49%), Gaps = 31/361 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  M  +EL++ L      +     R +Q++ + +     D +  S++S+    +L    
Sbjct: 3   LNSMYLDELKDYLSS----KSEKSFRANQLYTFFHKNKRWDIEN-SNLSKSTLKILQND- 56

Query: 69  SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I   +I+    S  D T+K+L       +     IE V +      + C+S+QVGC + 
Sbjct: 57  EINTIKILKIFQSKLDDTKKFLFTLDDSNV-----IEGVLMKYSFGYSQCISTQVGCRMG 111

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +    L RNLT  E+L QV +  +  G                   + N ++MG 
Sbjct: 112 CAFCASTKDGLFRNLTPAEMLNQVYIVENYFG-----------------INVKNFILMGS 154

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL NFDNV K L I     G + S R IT+ST G V  I ++ +  + + LA+SLH  
Sbjct: 155 GEPLDNFDNVIKFLKILHSKEGHNTSYRNITISTCGVVDGIYKLIDSALPINLAVSLHQT 214

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++  R+ ++PINRKY L  L  A   Y  L    RITFEY ++KG ND+ ++   L ++ 
Sbjct: 215 NDLERSKIMPINRKYNLNKLKKALEDY-NLKTKNRITFEYTLIKGKNDTLKNVNELKEMF 273

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +   INLIP NP         +++DI  F   ++ + ++  +R   G DI A+CGQL+
Sbjct: 274 QNLFCHINLIPLNPIEEYNEQRPNRQDINKFKRLLEDASFNVTVRRELGSDIDASCGQLR 333

Query: 367 S 367
           +
Sbjct: 334 A 334


>gi|300814530|ref|ZP_07094786.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511357|gb|EFK38601.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 348

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 113/361 (31%), Positives = 178/361 (49%), Gaps = 31/361 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  M  +EL++ L   G        R +Q++ + +     D +  S++S+     + Q+ 
Sbjct: 3   LNSMYLDELKDYLSSKG----EKSFRANQLYTFFHKNKRWDIEN-SNLSKSTL-KIIQND 56

Query: 69  SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            I   +I+    S  D T+K+L       +     IE V +      + C+S+QVGC + 
Sbjct: 57  EINTIKILKIFQSKLDTTKKFLFTLDDSNV-----IEGVLMKYNFGYSQCISTQVGCRMG 111

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC +    L RNLT  E+L QV +  +  G                   + N ++MG 
Sbjct: 112 CAFCASTKDGLFRNLTPAEMLNQVYIVENYFG-----------------INVKNFILMGS 154

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEPL NFDNV K L I     G + S R IT+ST G V  I ++ +  + + LA+SLH  
Sbjct: 155 GEPLDNFDNVIKFLKILHSKEGHNTSYRNITISTCGVVDGIYKLIDSALPINLAVSLHQT 214

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           ++  R+ ++PINRKY L  L  A   Y  L    RITFEY ++KG ND+ ++   L  + 
Sbjct: 215 NDLERSKIMPINRKYNLNKLKKALEDY-NLKTKNRITFEYTLIKGKNDTLKNVNELKDMF 273

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           + +   INLIP NP         +++DI  F   ++ + ++  +R   G DI A+CGQL+
Sbjct: 274 QNLFCHINLIPLNPIEEYNEQRPNRQDINKFKRLLEDASFNVTVRRELGSDIDASCGQLR 333

Query: 367 S 367
           +
Sbjct: 334 A 334


>gi|315187026|gb|EFU20783.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6578]
          Length = 354

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 118/375 (31%), Positives = 183/375 (48%), Gaps = 31/375 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   ++ SL G++ EE+ E L          R R  QI++WI+ + I  F GM+ +   +
Sbjct: 1   MRTRERLSLSGLLPEEISELL------PMEPRYRAIQIFEWIHAKRILSFSGMTTLPSRL 54

Query: 61  RHLLNQHFSIIYPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           R  L+  + +    I    +   D T K  +R     I   V    V    K R T C+S
Sbjct: 55  REELSSSYHVRGATIHALVQDPGDETIKAQVRLQDGQIVEAV----VLTDGKGRKTACLS 110

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +Q GC++ C+FC TG     RNLT  EI+ Q L+ +   G                   +
Sbjct: 111 TQAGCAMGCAFCKTGQLGFSRNLTPGEIVDQWLILQDTAG------------------PL 152

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           S+IV MGMGEPL N  N++K++SI S   G   S RRIT+ST G VP I  + EE   V 
Sbjct: 153 SHIVFMGMGEPLLNLANLRKAISILSHERGSRLSLRRITVSTCGIVPGILSLAEEGPHVR 212

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA SL +   ++R  L+P+  ++PL+ + +A   Y   +   RIT E V ++G+  +P +
Sbjct: 213 LAFSLTSARPEVRKQLMPVEARHPLDHVKEALLKYQAATGK-RITLEVVAIEGLTCTPEE 271

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           +  +    +G+   +N+IP+NP PG  Y       + +F   + +   +  +R  +G  I
Sbjct: 272 SRAIAGFAEGLRVLVNVIPWNPVPGLPYRPPSPAALSSFVSSLTKKALTVTVRYRKGQHI 331

Query: 359 LAACGQLKSLSKRIP 373
             ACGQL  ++ R  
Sbjct: 332 HGACGQLGVVTPRKT 346


>gi|294056045|ref|YP_003549703.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM
           45221]
 gi|293615378|gb|ADE55533.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM
           45221]
          Length = 351

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 188/368 (51%), Gaps = 28/368 (7%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR-DFQGM-SDISQEVRHLL 64
            +L G+  + LE+ L    +   H       ++  +  + I  D   + + +    R L 
Sbjct: 3   TTLEGLRFDALEQRLAAAEVNPVH----AKAVFNAVQRKLIEGDLSSVETLLPPVQRWLA 58

Query: 65  NQHFSIIY-PEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
            +   +    E   E  S DG T K+LL+          E+E+V +    R T C+SSQV
Sbjct: 59  AEDAPVRCALEQTAETPSADGYTHKYLLKL-----ADGAEVESVRMGFPGRFTACLSSQV 113

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C FC TG     R L+A EI+ Q L     L +               G ++ NI
Sbjct: 114 GCAMGCVFCATGQMGFSRQLSAGEIVAQALHVERRLRE-------------DFGERLRNI 160

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAI 241
           VMMGMGEPL NF+ +  +L I +D+ GL+    R+ +ST G+VP I ++ +      LA+
Sbjct: 161 VMMGMGEPLHNFEPLMDALDILTDTRGLNIGPARVAISTVGYVPGIRKLMQHAKRYSLAV 220

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH  S++ R  L+PIN+++PL  L++ CR Y  +  A R+ F + ++KG+NDS   A  
Sbjct: 221 SLHGASDEERGKLIPINKRWPLAELLETCREYSQVKKA-RVFFAWTLIKGVNDSDDHAQR 279

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  +L+G+ A +NLIP NP         ++  +  F E I+ +G  S +R  RG+D+ A 
Sbjct: 280 LAALLQGMDAHVNLIPLNPTDDFSGEAPEEARVRAFQEIIQAAGLPSTVRQRRGIDVAAG 339

Query: 362 CGQLKSLS 369
           CGQLK+  
Sbjct: 340 CGQLKAKK 347


>gi|168043878|ref|XP_001774410.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674262|gb|EDQ60773.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 372

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 184/378 (48%), Gaps = 48/378 (12%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           L+  L +IG+   HV      IW  +      +   +  +      ++ + F  +  ++ 
Sbjct: 16  LKWELERIGVKALHVFT----IWTHVLAHPDTEAHDVPGLPFAAIDMIKEKFKTLTSQVK 71

Query: 77  DEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEK--------------SRGTLCVSSQ 121
           D++ S DGT  K L++       G   +E V +                 SR TLCVSSQ
Sbjct: 72  DQETSADGTTTKLLIQLQ-----GGQSVEAVIMRHDAGAGKYAGGPRQGGSRATLCVSSQ 126

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C+FC TGT  L  NL+A EI+ Q++ A  +                     I N
Sbjct: 127 VGCQMGCTFCATGTMGLKGNLSAGEIVEQLVHASQVT-------------------PIRN 167

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLA 240
           IV MGMGEPL N+ +V + + I +       S   IT+ST G +P I  +  ++  V LA
Sbjct: 168 IVFMGMGEPLNNYKSVVEGIQIMT-GRCFGLSPSHITVSTVGVIPRILSIANDLPGVNLA 226

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA + +LR  +VP  + YPL  L+ A   Y  +S  RR+  EYVML GINDS   A 
Sbjct: 227 LSLHAPTQELRCQIVPTAKAYPLHKLMAALNSYQTIS-RRRVLVEYVMLAGINDSDEVAH 285

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDIL 359
            L  +LK     +NLIP+NP    +Y  + Q+D+  F + ++   G  + IR   G DI 
Sbjct: 286 QLGTLLKDHNVTLNLIPYNPATSSDYKPTSQEDLTRFQKILRGVHGVRTTIRQEMGQDIA 345

Query: 360 AACGQLKSLSKRIPKVPR 377
            ACGQL  +S+ + + P+
Sbjct: 346 GACGQL-VISQSVKQSPK 362


>gi|323453959|gb|EGB09830.1| hypothetical protein AURANDRAFT_12530 [Aureococcus anophagefferens]
          Length = 323

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 117/345 (33%), Positives = 175/345 (50%), Gaps = 32/345 (9%)

Query: 31  VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSIIYP--EIVDEKISC-DGTR 86
            + R  QI +WIY +G+ DF  MS++ ++ R  L     ++     ++  E++S  DGT 
Sbjct: 1   PKFRAKQIHEWIYDKGVHDFDAMSNLPKKFRDDLKARGATVGGTIAKLRVEQVSQRDGTI 60

Query: 87  KWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145
           K    F    +     +E+V +P +  R T C+SSQ GC + C+FC TG   L R+LTA 
Sbjct: 61  KRAYEFRDGSV-----VESVLMPYEDGRRTACISSQAGCGMGCTFCATGQMGLTRHLTAA 115

Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           EI  Q   A     +               G ++SN+V MGMGEPL N+ NV  +    +
Sbjct: 116 EIFEQ---AARFSRELSAR-----------GERLSNVVFMGMGEPLANYKNVMAAARRIN 161

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264
           D   L    R IT+ST G    I ++ E+ + V LA+SLH  ++  R+ ++P+N +Y LE
Sbjct: 162 DE--LGVGARHITISTVGLARGIGKLAEDPLQVTLAVSLHQATDAARSAIMPVNDRYDLE 219

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG---IPAKINLIPFNPW 321
            L+ A R Y   +  RR+TFE+  + G ND    A  L  +LK      A +N+IP NP 
Sbjct: 220 TLLGAVRDYQAAT-RRRVTFEWAAIAGENDDVDAARTLGALLKKHGIRDAHVNVIPLNPT 278

Query: 322 PGCEYLCSDQKDIVTFSECIK-RSGYSSPIRTPRGLDILAACGQL 365
            G     +    +  F + ++   G S+  R  RG+DI A CGQL
Sbjct: 279 KGYGGKRAKNGAVDRFCKTLEAEFGVSATPRVRRGIDIDAGCGQL 323


>gi|308810124|ref|XP_003082371.1| from E. coli sequence gb|U02965. (ISS) [Ostreococcus tauri]
 gi|116060839|emb|CAL57317.1| from E. coli sequence gb|U02965. (ISS) [Ostreococcus tauri]
          Length = 602

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 134/365 (36%), Positives = 199/365 (54%), Gaps = 28/365 (7%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRD-FQGMSDISQEVRHLLNQH 67
           L GM R EL   L   G        R   ++  +Y     + F+G     ++    L + 
Sbjct: 85  LKGMRRSELARWLEATGERAT----RADGLFATMYRDLSMNAFEGDGRFGEKFASRLERV 140

Query: 68  FSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            ++     + + + + DGTRK               +E+V IP   R T+CVSSQ+GC++
Sbjct: 141 ATMDGDLRLGEVRRASDGTRKVTYALAD---DSGGIVESVLIPSGRRTTVCVSSQLGCAM 197

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC+T T  L +NL+A +I+ QV+ AR +  +               G ++SN+V MG
Sbjct: 198 NCQFCFTATMGLRKNLSAAQIVEQVVRARRMCDE---------------GEEVSNVVFMG 242

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MGEPL N D V K++ I  D  GL+FS+ ++T+STSG VP + R   E    LA+SL+A 
Sbjct: 243 MGEPLHNIDEVLKAVDILLDPRGLAFSRNKVTVSTSGLVPQMERFLTESEASLAVSLNAT 302

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLS----NARRITFEYVMLKGINDSPRDALNL 302
           ++ +RN ++PINRKY L+ L+   R     +    + R++ FEY+ML G+NDS  DA  L
Sbjct: 303 TDYIRNWIMPINRKYNLDSLLGLLRREFPRTDLGRHQRQVFFEYIMLAGVNDSDEDADRL 362

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           I+I K +P KINLI FN   G E+ CSDQ+ I  F + +  +G +  IR  RG + ++AC
Sbjct: 363 IEIAKSLPCKINLIYFNTHDGAEFKCSDQERIAAFRQRVSDAGVTCTIRVSRGDEEMSAC 422

Query: 363 GQLKS 367
           GQL S
Sbjct: 423 GQLGS 427


>gi|255077056|ref|XP_002502181.1| predicted protein [Micromonas sp. RCC299]
 gi|226517446|gb|ACO63439.1| predicted protein [Micromonas sp. RCC299]
          Length = 395

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 182/378 (48%), Gaps = 42/378 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR-GIRDFQGMSDISQEVRHLL- 64
            +L+G+  +EL E   +  +PQ     R  QI   IY        +GM  +    R  L 
Sbjct: 40  RTLLGLGLDELRELSAEFALPQW----RGQQIHDAIYGEMRKTTIEGMQQLPLGFRQALV 95

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------EKSRGTLCV 118
           +  +     E V+     DGTRK L       I     IE V IP       + R T+CV
Sbjct: 96  DAGYETGRREPVEIVSDEDGTRKALFELRCGSI-----IEAVGIPVERAKGRRRRFTVCV 150

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC++ CSFC TG Q   RNLT++EI+ QVL    + G                 R+
Sbjct: 151 SSQVGCAMRCSFCATGRQGFRRNLTSDEIVNQVLSMEDVFG-----------------RR 193

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGV 237
            +N+VMMGMGEPL N   V ++    +  +G     R  T+ST G    ++++    +  
Sbjct: 194 ATNVVMMGMGEPLLNLREVLRAHRCLNRDVG--IGGRYFTISTVGVPNALSKLAAHRLQA 251

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA + +LR  L+P  + +PL+ L++  R Y   +   R+TFEY +L G NDS  
Sbjct: 252 TLAVSLHAPTQELRERLIPSAKAFPLDALLEEVRMYRKATGR-RVTFEYTLLAGENDSED 310

Query: 298 DALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI-KRSGYSSPIRTP 353
            A  L K+L+   G    INL+P+NP  G  +    +  +  F + +    G S  +R  
Sbjct: 311 HARALAKLLRSKVGRGCHINLLPWNPVAGANHQRPSKSAVNRFCDVLAAERGVSYSVRAT 370

Query: 354 RGLDILAACGQLKSLSKR 371
           RGL   AACGQL    +R
Sbjct: 371 RGLVAQAACGQLTGAFER 388


>gi|189485422|ref|YP_001956363.1| hypothetical protein TGRD_419 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|205829922|sp|B1H070|RLMN_UNCTG RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|170287381|dbj|BAG13902.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 350

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 195/367 (53%), Gaps = 34/367 (9%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+ ++ +   +   A+     P      R +QI +WIY +    F+  ++I +E+R+ L+
Sbjct: 9   KKYILDLNDAQFNRAVK----PIIEQDYRINQIIEWIYAKKAVSFESFTNIPKELRNKLD 64

Query: 66  QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           + F +   +IV ++ S  D T ++  R   +          V++P   + ++C+SSQ+GC
Sbjct: 65  EKFFLRTLKIVKKEKSLIDSTIRYTFRTADKKY-----FFAVFLPANGKNSVCISSQIGC 119

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +G  KL RNL+  EI+ Q+L   +   +                 KIS I+ 
Sbjct: 120 PIMCAFCSSGKTKLARNLSRGEIIEQILQVENDTKE-----------------KISGILF 162

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEP+ NF+N+   L+    S      KR IT+S+ G VP + ++ ++  GV LA+SL
Sbjct: 163 MGMGEPMLNFNNLISVLNSLLSSKEFGIGKRHITVSSVGIVPAVKKLADDNFGVRLALSL 222

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV    R  LVP N  + +E ++ A ++Y   +N+  +T EYV++KGIN S  DA  L 
Sbjct: 223 HAVDERQRKKLVPDNLGFSIEDILKAGKYYLKKTNSH-LTIEYVLVKGINISSADAHKLA 281

Query: 304 KILK-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           ++LK         ++NLIPFNP    ++   D+K I  F   +K +G +  +R  +G +I
Sbjct: 282 RLLKRCDLINSDVQVNLIPFNPVTDVQFQRPDKKSINKFKSILKLNGITVNVRQSKGANI 341

Query: 359 LAACGQL 365
            AACGQL
Sbjct: 342 NAACGQL 348


>gi|330975900|gb|EGH75966.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 261

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 124/268 (46%), Positives = 169/268 (63%), Gaps = 19/268 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY 273
            ++ LRN LVP+N+KYPL++L+++CR Y
Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRY 255


>gi|307718490|ref|YP_003874022.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6192]
 gi|306532215|gb|ADN01749.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6192]
          Length = 354

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 184/375 (49%), Gaps = 31/375 (8%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M   ++ SL G++ E++ E L          R R+ QI++WI+ + I  F GM+ +   +
Sbjct: 1   MRTRERFSLSGLLPEDISELLTA------EPRYRSLQIFEWIHAKRISSFTGMTTLPSRL 54

Query: 61  RHLLNQHFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           R  L+  + +    +    +   D T K  +R     I   V    V    K R T C+S
Sbjct: 55  REELSSSYHVRGASLHALLQDPGDETIKAQVRLQDGQIVEAV----VLTDGKGRKTACLS 110

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +Q GC++ C+FC TG     RNLT  EI+ Q L+ +   G                   +
Sbjct: 111 TQAGCAMGCAFCNTGQLGFSRNLTPGEIVDQWLILQDTAG------------------PL 152

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
           S+IV MGMGEPL N  N++K++SI S   G   S RRIT+ST G VP I  + EE   V 
Sbjct: 153 SHIVFMGMGEPLLNLANLRKAISILSHERGSRLSLRRITVSTCGIVPGILSLAEEGPHVR 212

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA SL +   ++R  L+P+  ++PL+ + +A   Y   +   RIT E V ++G+  +P +
Sbjct: 213 LAFSLTSARPEVRKQLMPVEARHPLDHVKEALLRYQAATGK-RITLEVVAIEGLTCTPEE 271

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           +  +    +G+   +N+IP+NP PG  Y       + +F   + +   +  +R  +G  I
Sbjct: 272 SRAIAGFAEGLRVLVNVIPWNPVPGLPYRPPSPAALSSFVSSLTKKALTVTVRYRKGQHI 331

Query: 359 LAACGQLKSLSKRIP 373
             ACGQL  ++ R  
Sbjct: 332 HGACGQLGVVTPRKT 346


>gi|38175091|dbj|BAD01056.1| hypothetical protein [Pseudomonas putida]
          Length = 284

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 127/268 (47%), Positives = 166/268 (61%), Gaps = 19/268 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ + E+E+    IG      R R  Q+ KWI+  G+ DF  M+++ + +R  L 
Sbjct: 7   KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLE 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               I  PE+V E IS DGTRKW++R     +     +ETVYIP   RGTLCVSSQ GC+
Sbjct: 63  AVAEIRPPEVVSEDISADGTRKWVIR-----VASGSCVETVYIPTDDRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV LA    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFDNV  ++ I  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA
Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY 273
            +++LRN LVPIN+KYPL+ML+++C  Y
Sbjct: 228 PNDELRNKLVPINKKYPLKMLLESCMGY 255


>gi|159483801|ref|XP_001699949.1| hypothetical protein CHLREDRAFT_97359 [Chlamydomonas reinhardtii]
 gi|158281891|gb|EDP07645.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 368

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 175/378 (46%), Gaps = 45/378 (11%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHL 63
           +  L  +   ELEE    +G P +    R  Q+++W+Y   + IR+       +      
Sbjct: 1   RVMLKNLPLPELEEWCASVGEPPK----RAKQLYRWLYGNRKWIRNLDQADSDASAFSGA 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-------EIETVYIPEKSR--- 113
                     ++     + DGTRK +        GG          +ETV IP  +R   
Sbjct: 57  FKAKVLAGGLQLQSVHTARDGTRKLVFALVGDWEGGDGPAGSARGTVETVLIPMTNRQGQ 116

Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
               T C+S+QVGC++ C FCYTG   L+ NL+  +I+ QV+ AR  L +          
Sbjct: 117 NLRYTACLSTQVGCAMNCQFCYTGRMGLLGNLSTAQIVEQVVEARRYLAE---------- 166

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
               V   I+NIV MGMGEPL N+D V  ++ I +   GL  S+ +I +ST G VP + R
Sbjct: 167 --QEVQIPIANIVFMGMGEPLHNYDAVMSAIEILAT--GLELSRNKIIVSTVGLVPEMRR 222

Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH---YPGLSNARRITFEYV 287
                   LA         +R+ +VP NR+YPL+ L+ A R    Y        +  EYV
Sbjct: 223 FIASGRAKLA---------VRDWIVPTNRRYPLDQLLGALREAFPYGKRKGDDFVVIEYV 273

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347
           +L G+ND+  DA  L+ +   I   +NLI FNP  G ++  S   D+  F      +G  
Sbjct: 274 LLAGVNDTLADAERLLALTSDIYCLVNLIVFNPHDGTQFKRSSDDDVRAFRAVFLAAGRP 333

Query: 348 SPIRTPRGLDILAACGQL 365
             +R  +G D +AACGQL
Sbjct: 334 CTVRASKGDDEMAACGQL 351


>gi|21674009|ref|NP_662074.1| florfenicol resistance protein, putative [Chlorobium tepidum TLS]
 gi|81791215|sp|Q8KD71|RLMN_CHLTE RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|21647156|gb|AAM72416.1| florfenicol resistance protein, putative [Chlorobium tepidum TLS]
          Length = 374

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 192/378 (50%), Gaps = 37/378 (9%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + ++  + R+EL E L ++G P      R +Q+ +W+Y      F+ MS +S+++R  L 
Sbjct: 22  RLNIRRLGRKELTELLTRLGEPA----YRANQLHRWLYSNQALRFEEMSTLSKQLRQKLA 77

Query: 66  QHFSIIYPEIV-DEKISCDG-------TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
             + I    +V  E+ + D        T K+L++     +     +E+V IP + R T C
Sbjct: 78  SEWIIHPASLVGTERETTDASLVTGNPTAKFLIKLEDNEL-----VESVLIPSEERITAC 132

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +SSQ+GC L C+FC TG     RNLTA EI  QV L                       R
Sbjct: 133 ISSQIGCPLRCTFCATGHMGFRRNLTASEITDQVFLLEK-------------EAQKRHWR 179

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEE-I 235
            ++NIV MGMGEPL N DNV +S+   ++     S S+R+IT+ST G    + R+    +
Sbjct: 180 GLTNIVFMGMGEPLLNLDNVLESIGTLTEKDYQFSISERKITISTVGLPVEMDRIARSGL 239

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              LAISLH+    +R  ++PI     L+ L  A   Y  ++ ++ +T  Y++L+GINDS
Sbjct: 240 KTKLAISLHSADQLIRERMMPIAADITLDKLAKAINSYNSVT-SQPVTLVYMLLEGINDS 298

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYL--CSDQKDIVTFSECIKRSGYSSPIRTP 353
           P DA  L++  K +  KINLI +N     ++   CS  K +  F + +  +G    +R  
Sbjct: 299 PEDARKLVRFAKRVLCKINLIDYNSIVTLKFKPGCSSSKTM--FIQQLLDAGLLVTVRKS 356

Query: 354 RGLDILAACGQLKSLSKR 371
           +G  I AACGQL +   R
Sbjct: 357 QGATINAACGQLATRPVR 374


>gi|299138881|ref|ZP_07032058.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX8]
 gi|298599035|gb|EFI55196.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX8]
          Length = 406

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 127/422 (30%), Positives = 204/422 (48%), Gaps = 79/422 (18%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-N 65
            +L G    EL E +  +G        R  Q+++ +Y + +   + ++ +SQE+R  L +
Sbjct: 2   HALFGKTLPELTELMAGLG----QKPYRARQVFEALYKQRVGLVEDVTTLSQELRDRLTS 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP---------------- 109
           + F+I  PEI     S DGT ++L+R           +ETV++P                
Sbjct: 58  EGFAIGLPEIAQTAKSVDGTERYLMRM-----ADGETVETVWMPDGDGGERGDGSEAAEE 112

Query: 110 -----------------------------------EKSRGTLCVSSQVGCSLTCSFCYTG 134
                                                 R T+C+SSQVGC++ C FC T 
Sbjct: 113 ESAEVVVAEEAVDGGYWSRRGNGRDRSNFGTLAEQGFRRATICISSQVGCAVNCQFCLTA 172

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
              + RNLTA EI  QV    +      G + I             N+V MGMGEP  N+
Sbjct: 173 KLGIKRNLTAGEIAGQVAAVLNRHRIQIGKDRI-------------NLVFMGMGEPFLNY 219

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
           +   +S+ +  +  G+   + R+T+STSG +P I    +E +   LA+SL+A ++ +R  
Sbjct: 220 EQFMQSVRVLVE--GIGIPESRMTVSTSGILPGIEAFAKETMRPKLALSLNASNDVVRER 277

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           ++PI RK+ +  L++A +  P L     +TFEYV+L  +ND P  A  ++++L GI AK+
Sbjct: 278 IMPITRKWNIAALLEAVQKIP-LRTREWVTFEYVLLGEVNDQPEHAREVLELLDGIRAKV 336

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL-KSLSKRI 372
           NLI +NP PG +Y      D+  F + +   G ++ IR PRG DI AACGQL +++++  
Sbjct: 337 NLIVWNPGPGIDYHQPKPADVAVFQKMLIEGGIATYIRRPRGRDIYAACGQLKRTVAEEK 396

Query: 373 PK 374
           P+
Sbjct: 397 PQ 398


>gi|218961533|ref|YP_001741308.1| putative radical SAM-dependent enzyme (yfgB) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730190|emb|CAO81102.1| putative radical SAM-dependent enzyme (yfgB) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 350

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 118/360 (32%), Positives = 184/360 (51%), Gaps = 22/360 (6%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            ++  +M E+L ++++           R  Q+  W+Y   + + + M+++ +E R  L  
Sbjct: 3   TNIFSLMPEDLAKSIISR--QPDLPEYRIKQVLSWLYKFYLNEPEKMTNLPEEFRAFLKT 60

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           ++S   PEI  + +S DG  K+ L      I     IE+V IP + + TLC+S+QVGC+ 
Sbjct: 61  NYSFFLPEIESKLVSQDGAVKYRLLLEDGKI-----IESVLIPAEKKNTLCLSTQVGCAR 115

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L+RNL  +EI+ QV++A                +  S   K++N+V+MG
Sbjct: 116 NCKFCATGKMGLIRNLATQEIIGQVIIASK-------------ELKNSGTAKLTNLVLMG 162

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEP+ N  NV  +L I   + G SFS RRIT+ST G VP I  + +  I   LA+SL +
Sbjct: 163 MGEPMDNLKNVLMALQILQSNAGFSFSPRRITVSTCGVVPGIIALADSGIKAKLALSLTS 222

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
                R  L+P++ +Y L  L  A  +Y   + + RIT EY+++   N    D   L K 
Sbjct: 223 AIQSKRRKLMPVSDQYNLIQLKQALLYYLRKT-SFRITIEYILIPNFNMDSEDLAALRKF 281

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              +  KIN IP+NP     +    + +I  F +  ++   +  +R  RG DI  ACGQL
Sbjct: 282 TGDLSCKINFIPYNPGRNSPFRAPTETEIKDFMQRAQKLPQAITLRKSRGADIFGACGQL 341


>gi|149200056|ref|ZP_01877081.1| YloN [Lentisphaera araneosa HTCC2155]
 gi|149136814|gb|EDM25242.1| YloN [Lentisphaera araneosa HTCC2155]
          Length = 345

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 178/366 (48%), Gaps = 29/366 (7%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M RE ++  + +  +P    + R  Q+ +  +      F  +++  +++R+ L +   ++
Sbjct: 1   MNRERIQTIVDEYKLP----KFRAKQLKEAFFEHHYSSFDQLTNFPKDLRNKLTEENQVL 56

Query: 72  YPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYI-PEKSRGTLCVSSQVGCSLTCS 129
              +     S D  T K LL          ++IE+V + P+    T C+SSQVGC++ CS
Sbjct: 57  CLTVNKVFASSDQVTYKALLELHD-----GLKIESVLMSPKPGLWTACISSQVGCAMKCS 111

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TGT  L RNLT+EEI  QVL  R  +       D           +++N+V MGMGE
Sbjct: 112 FCATGTMGLTRNLTSEEISDQVLFWRQFIAKNDIDTD-----------RLNNVVYMGMGE 160

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           PL N   V  S+   +         R I++STSG +  +  + E+   V LA+SLHA  +
Sbjct: 161 PLHNTKEVFSSIEELTAEDSFKIGSRHISVSTSGLLKGVKEMAEKFPQVNLALSLHAAKD 220

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           +LR+ ++PIN+ + LE +      Y   ++  ++  EYV+L+G N+    A+ L K LK 
Sbjct: 221 ELRSSIMPINKAFDLEKIRTCLDEYIDSTHR-KVFIEYVLLEGENNELSHAVELSKFLKS 279

Query: 309 IP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +        NLI +N     E+  S ++    F   +K  G S  IR   G DI  ACGQ
Sbjct: 280 LKRPELTHTNLIVYNET-DSEHKGSTKQKADQFRNHLKSKGLSVTIRKNLGRDIDGACGQ 338

Query: 365 LKSLSK 370
           L    +
Sbjct: 339 LAVKEE 344


>gi|224418821|ref|ZP_03656827.1| hypothetical protein HcanM9_06035 [Helicobacter canadensis MIT
           98-5491]
 gi|313142339|ref|ZP_07804532.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131370|gb|EFR48987.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 292

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 172/308 (55%), Gaps = 22/308 (7%)

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQV 122
           L ++F     EI  ++ S DG+ K+L +            E V++  K  + TLC+SSQV
Sbjct: 1   LKENFISNAVEIAKKEQSSDGSVKYLFKTADNLT-----YEAVFLKMKEDKFTLCLSSQV 55

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + CSFC T     VRNL A E++ QV   +                      K  NI
Sbjct: 56  GCKVGCSFCLTAKGGFVRNLNAGEMVYQVFAIKKDQNI--------------PSNKAVNI 101

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           V MGMGEPL N +NV K + I S+  GLS S+RR T+STSG  P I ++G  ++GV LAI
Sbjct: 102 VYMGMGEPLDNLENVTKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALDLGVQLAI 161

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHAV ++LR  L+PIN+ Y ++ +ID    +P + + +R+ FEY+M+ GINDS   A  
Sbjct: 162 SLHAVDDELRTKLMPINKAYNIQNIIDEVVAFP-IDSRKRVMFEYLMIDGINDSLECAKK 220

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L+ +L  I AK+NLI FNP  G  Y    ++ +  F E + + G    IR  +GLDI AA
Sbjct: 221 LVALLNKIKAKVNLIYFNPHEGSLYKRPSKEKVEAFREYLLKKGLLCTIRESKGLDISAA 280

Query: 362 CGQLKSLS 369
           CGQL+   
Sbjct: 281 CGQLREKE 288


>gi|196233391|ref|ZP_03132235.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
 gi|196222531|gb|EDY17057.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
          Length = 367

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 185/377 (49%), Gaps = 30/377 (7%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           ++ +   +L  +    L + +  +     H       +W+ +Y  G  D    S+    +
Sbjct: 7   LSTINYPTLTDLPFPALAQEMDGLSPVHTHA------LWRALYREGATDLARRSEFLPPL 60

Query: 61  RHLLNQ---HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTL 116
           R  L+       +  PE+V +  S DG TRK+LLR           IETV +  + R T 
Sbjct: 61  RRWLDAATARLPVDVPELVADTASTDGLTRKFLLRL-----ADAQTIETVLMSYRGRYTA 115

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           CVS+Q GC++ C FC TG     R+L   EI+ QVL A+               ++    
Sbjct: 116 CVSTQAGCAMGCVFCATGQMGFTRHLRPGEIVAQVLHAQR-------------TLLARSE 162

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235
             + N+V+MGMGEPL N+D+V  +L I SD  GL+     IT+ST G VP I R+ EE  
Sbjct: 163 PGLRNLVLMGMGEPLHNYDSVMTALEIISDRRGLNIGPGHITISTVGVVPGILRLAEEQR 222

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              LA+SLH  S + R+ LVP +R++ L  LI ACR Y   +   RI FE+ ++ G NDS
Sbjct: 223 PYHLAVSLHGASEEERSALVPASRRWSLAELIAACRTYGAKTGR-RIFFEWTLIAGQNDS 281

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
           P  A  L  +L GI A +NLIP NP  G     S       F   +K +   S +R  RG
Sbjct: 282 PAQAARLAALLAGIDAHVNLIPLNPTGGFAGTASASAAANEFQHTLKAANIPSTVRQRRG 341

Query: 356 LDILAACGQLKSLSKRI 372
           +D+ A CGQL+    R 
Sbjct: 342 IDVAAGCGQLRVEKGRT 358


>gi|167768548|ref|ZP_02440601.1| hypothetical protein CLOSS21_03107 [Clostridium sp. SS2/1]
 gi|167710072|gb|EDS20651.1| hypothetical protein CLOSS21_03107 [Clostridium sp. SS2/1]
          Length = 250

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 97/267 (36%), Positives = 149/267 (55%), Gaps = 19/267 (7%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           +  K   ++C+SSQ GC + C FC +    L RNLT  E+L Q+   +            
Sbjct: 1   MKYKHGNSVCISSQAGCRMGCKFCASTLGGLDRNLTPSEMLSQIYYIQR----------- 49

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
                     ++SN+VMMG GEP+ N+DNV + L + +   GL+ S+R IT+ST G VP 
Sbjct: 50  ------DTEERVSNVVMMGTGEPMDNYDNVLRFLELITSEDGLNISQRNITISTCGIVPK 103

Query: 228 IARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
           I  + +  + + LAISLH+ ++++R  L+PI  KY ++ L+DAC +Y   +N  R+TFEY
Sbjct: 104 IKELAQKHLQITLAISLHSPNDEMRRGLMPIAMKYSIDELLDACHYYFKETNR-RMTFEY 162

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346
            ++ G+ND P  A  L   LKG P  +NLIP NP    ++  S  K ++ F + ++++  
Sbjct: 163 SLVAGVNDQPVHAEELAGRLKGFPCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRV 222

Query: 347 SSPIRTPRGLDILAACGQLKSLSKRIP 373
           +  IR   G DI AACGQL+    +  
Sbjct: 223 NVTIRREMGADINAACGQLRRKKLQSR 249


>gi|256370982|ref|YP_003108806.1| radical SAM enzyme, Cfr family [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007566|gb|ACU53133.1| radical SAM enzyme, Cfr family [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 353

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 115/358 (32%), Positives = 184/358 (51%), Gaps = 30/358 (8%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           EL+ A ++  +P      R  Q++  +Y  G R  + +S +   +R  L  H      E 
Sbjct: 6   ELDRAAVRALVPWPDW--RIEQLFHGLYHEGQR-LEAISTLPARMRAELASHLDPGLTER 62

Query: 76  VDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
             E  + DG T K+ L      +     +ETV +    R ++CVSSQ GC++ C FC TG
Sbjct: 63  RREH-ADDGETVKFALEAADGAL-----VETVVMQSARRISVCVSSQAGCAMGCRFCATG 116

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
               VR+L   EI+ Q+ +A+  +                  R+++++V MGMGEPL N 
Sbjct: 117 QAGFVRHLGVGEIVEQLAIAQRSVR----------------PRRLTHVVFMGMGEPLANA 160

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNI 253
               +++           S RR+T+ST G VP I R+   ++GV LA+SLHA ++  R+ 
Sbjct: 161 SVAIEAIRRIRAD--FGISPRRVTVSTVGIVPGIRRLAHADLGVTLAVSLHAANDAARSD 218

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           LVP+NR+Y ++ ++DA + +  L+   R+T E+ ++ G+ND  RDA  L    + + A +
Sbjct: 219 LVPMNRRYGIDAVLDAAQEFSELTGR-RVTLEWALIAGVNDRDRDATELAGHARRLAAHV 277

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           NLIP NP PG   + +D   +  F+  ++  G +  +R  RG  I AACGQL +   R
Sbjct: 278 NLIPLNPTPGYPMVGTDPDGVARFARRLRSLGVNVTVRDTRGRSIDAACGQLAADVAR 335


>gi|222619965|gb|EEE56097.1| hypothetical protein OsJ_04941 [Oryza sativa Japonica Group]
          Length = 363

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 108/374 (28%), Positives = 161/374 (43%), Gaps = 70/374 (18%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67
           L+G+   +L +  + +G        R  Q+   +Y    +  Q  S + +  R  L    
Sbjct: 36  LLGLSEPDLRQLAVDLG----QQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFREALVGAG 91

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQV 122
           + +    +     + DGT K LL+     +     IETV IP        R T CVSSQV
Sbjct: 92  WKVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDKGPSRLTACVSSQV 146

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L CSFC TG     RNL A EI+ QVL                     +   +++N+
Sbjct: 147 GCPLRCSFCATGKGGFARNLHAHEIVEQVLAIEE-----------------TFQHRVTNV 189

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V MGMGEP+ N  +V ++    +    L   +R IT+ST G    I ++   ++   LA+
Sbjct: 190 VFMGMGEPMLNLKSVLEAHRCLNKE--LKIGQRMITISTVGVPSTIKKLASHKLQSTLAV 247

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA +  LR  +VP                                  GIND+   A  
Sbjct: 248 SLHAPNQKLRETIVP---------------------------------TGINDAKEHAEE 274

Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L ++L   G    +NLIP+NP  G EY    +K +  F + ++    +  +R  RGLD  
Sbjct: 275 LAELLHTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDAN 334

Query: 360 AACGQLKSLSKRIP 373
           AACGQL++  ++ P
Sbjct: 335 AACGQLRNEFQKNP 348


>gi|189218104|ref|YP_001938746.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4]
 gi|189184962|gb|ACD82147.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4]
          Length = 314

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 121/300 (40%), Positives = 172/300 (57%), Gaps = 30/300 (10%)

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQVGCSLT 127
           E++ EK S DGT+K+L +           IETV IP         R TLCVS+QVGC+L 
Sbjct: 2   ELIHEKQSIDGTKKFLWQLCD-----GHAIETVLIPATDSRGSSERLTLCVSTQVGCALG 56

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC +G     RNL+  EI+ QVLL+ S++                   ++S+IV MGM
Sbjct: 57  CHFCASGLLGFKRNLSCGEIVEQVLLSESIVKQ-----------------RVSHIVFMGM 99

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246
           GEPL N+D + KS+ + S S G+  S R+IT+STSG  P I ++  E +   LA+SLHA 
Sbjct: 100 GEPLLNYDQLIKSIRLISSSWGIGISPRKITISTSGIAPRIRKLALETLPFRLAVSLHAT 159

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +++LR+ ++PIN KYPL  LI +C  +      ++IT EY+++ G+ND   DA  L +I 
Sbjct: 160 TDELRSKIMPINSKYPLSELIKSCEEFCSRR-KQKITLEYILISGLNDRREDAERLARIA 218

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
             + AK+NLIP+NP     +   DQK+ ++F   +K       IR  RG DI  ACGQL+
Sbjct: 219 TSLRAKVNLIPYNPIERLAWKSPDQKEQLSFFRWLKNKAVQVSIRKERGRDIDGACGQLR 278


>gi|171912540|ref|ZP_02928010.1| hypothetical protein VspiD_15210 [Verrucomicrobium spinosum DSM
           4136]
          Length = 368

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 109/374 (29%), Positives = 175/374 (46%), Gaps = 31/374 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
             L+ +  EEL   +++ G    H       + + +Y       Q    +   +   ++ 
Sbjct: 16  RPLLDLSTEELSAWMVEHGYKPAHTLP----VLRDVYGTRGAALQPKDRLPANLVQHIHS 71

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVGC 124
            F      +   ++S DGT K LLR P         +E+V +P     R   C+SSQVGC
Sbjct: 72  TFPATVATLAQRQVSEDGTCKLLLRLPD-----GRTVESVLMPDYHPERAAGCISSQVGC 126

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC T      RNLT+ EI+ Q +  R                    GR +  +V 
Sbjct: 127 AMGCDFCATTQTGFERNLTSGEIVEQFIHLRREAR--------------GAGRALRTVVF 172

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MGMGEP+ N  +V  ++   +D    +   R++T+ST G VP I  + E  +GV LA+SL
Sbjct: 173 MGMGEPMLNLRHVLPAVERMADPRLGALGWRQVTISTVGIVPGIEELTEANLGVHLAVSL 232

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  ++ R  ++P+ R++P++ +++A   Y   S     T +Y +L+G+NDS   A +L 
Sbjct: 233 HAPDDETRTAILPMGRRFPVQDILEAADRYQEKSGRI-TTIQYCLLEGVNDSLNQARDLA 291

Query: 304 KILKGIPAKINLIPFNPW----PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            ++K     INL+ +NP      G  Y  S  +   +F   ++  G  + +R  RG DI 
Sbjct: 292 NLMKDRRMHINLLRYNPTGLSLKGRTYAPSSMEQTESFLATLRECGAVAHLRRARGPDID 351

Query: 360 AACGQLKSLSKRIP 373
           AACGQL+    R  
Sbjct: 352 AACGQLRKREGRER 365


>gi|317498697|ref|ZP_07956989.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894039|gb|EFV16229.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 272

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 97/263 (36%), Positives = 149/263 (56%), Gaps = 19/263 (7%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           +  K   ++C+SSQ GC + C FC +    L RNLT  E+L Q+   +            
Sbjct: 1   MKYKHGNSVCISSQAGCRMGCKFCASTLGGLDRNLTPSEMLSQIYYIQR----------- 49

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
                     ++SN+VMMG GEP+ N+DNV + L + +   GL+ S+R IT+ST G VP 
Sbjct: 50  ------DTEERVSNVVMMGTGEPMDNYDNVLRFLELITSEDGLNISQRNITISTCGIVPK 103

Query: 228 IARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
           I  + +  + + LAISLH+ ++++R  L+PI  KY ++ L+DAC +Y   +N  R+TFEY
Sbjct: 104 IKELAQKHLQITLAISLHSPNDEMRRGLMPIAMKYSIDELLDACHYYFKETNR-RMTFEY 162

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346
            ++ G+ND P  A  L   LKG P  +NLIP NP    ++  S  K ++ F + ++++  
Sbjct: 163 SLVAGVNDQPVHAEELAGRLKGFPCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRV 222

Query: 347 SSPIRTPRGLDILAACGQLKSLS 369
           +  IR   G DI AACGQL+  +
Sbjct: 223 NVTIRREMGADINAACGQLRRKN 245


>gi|196234588|ref|ZP_03133408.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
 gi|196221334|gb|EDY15884.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
          Length = 364

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 172/371 (46%), Gaps = 31/371 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           SL  +  EEL   +   G    H       + +W+   G  +   M  +   +R  L   
Sbjct: 15  SLSDLSAEELALWMEGEGFKGGHAW---RVLREWLGANGGGERDSM-RLPAGLRERLRAT 70

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVGCS 125
           F      +   ++S DGT K LLR      G    +E+V +P     R   C+SSQVGC+
Sbjct: 71  FPQEAAVLARRQVSEDGTAKLLLRM-----GDGRTVESVLMPDYHPERAAGCISSQVGCA 125

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC T      RNLT+ EI+ Q L  R                  + GR +  IV M
Sbjct: 126 MGCDFCATTQTGFERNLTSGEIVEQFLQLRRE--------------AVAAGRVLRTIVFM 171

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLH 244
           GMGEP+ N  NV  ++    D    +F  R+IT+ST G VP I  +   ++GV LAISLH
Sbjct: 172 GMGEPMLNLRNVLAAVRRIGDPKLGAFGWRQITISTVGIVPGIDELRAADLGVQLAISLH 231

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A  +  R  L+P+ R++ +E ++ A   Y   S     T +Y +L G+NDS   A +L +
Sbjct: 232 APDDATRADLLPMGRRFAVEDVLAAADRYQASSGRV-TTIQYCLLDGVNDSLAQARDLSR 290

Query: 305 ILKGIPAKINLIPFNPW----PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           +L G    +NL+ +NP      G  Y  S  +    F   ++  G  + +R  RG DI A
Sbjct: 291 LLAGRTMHVNLLRYNPTGLSLRGRTYAPSSVEQTEAFLAELRAHGTVAHLRRARGPDIDA 350

Query: 361 ACGQLKSLSKR 371
           ACGQL+    +
Sbjct: 351 ACGQLRKREAQ 361


>gi|328948233|ref|YP_004365570.1| ribosomal RNA large subunit methyltransferase N [Treponema
           succinifaciens DSM 2489]
 gi|328448557|gb|AEB14273.1| Ribosomal RNA large subunit methyltransferase N [Treponema
           succinifaciens DSM 2489]
          Length = 342

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 123/363 (33%), Positives = 179/363 (49%), Gaps = 33/363 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK SL G+  EE+ +A+      Q     R  QI++WI  +G   F+ M++I +  R  L
Sbjct: 3   KKVSLSGLFPEEIAKAI------QLSPLFRAKQIYEWI-SKGAESFEQMTNIDKTTRKFL 55

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVG 123
            ++  +   ++ +     DGT K  +          + IETV + +K  R T CVS Q G
Sbjct: 56  EENVLLRSSKVTEVLKDPDGTIKLQISLSD-----GLAIETVLLTDKEGRKTACVSCQAG 110

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC TG   L RNLTA EI+ +        G                   + NIV
Sbjct: 111 CAMGCAFCQTGRLGLGRNLTAGEIVEEFFFMEKEAG------------------TLDNIV 152

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242
            MGMGEPL N D ++K+++I +D  G   S RRITLST G +  I  + E    V LAIS
Sbjct: 153 FMGMGEPLQNLDAIRKAVAILTDKKGRGLSPRRITLSTCGLISGIYELAENGPFVRLAIS 212

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L      LR  L+P+++  PL  L  A + Y   +   RIT E  +L G N     A  +
Sbjct: 213 LTTADPALREQLMPVSKGNPLPELKTAIKFYSEKTGK-RITLEAALLSGQNTGLESAKRM 271

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            +   G+ A INLIP+NP  G ++    +K+   F + ++ +     +RT RG+ I  AC
Sbjct: 272 AEFAAGLDAYINLIPWNPVQGLQFKTPSRKECEEFVKILQNANLKVNLRTRRGVKIGGAC 331

Query: 363 GQL 365
           GQL
Sbjct: 332 GQL 334


>gi|322806773|emb|CBZ04342.1| ribosomal RNA large subunit methyltransferase N [Clostridium
           botulinum H04402 065]
          Length = 272

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 113/288 (39%), Positives = 164/288 (56%), Gaps = 25/288 (8%)

Query: 81  SCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
           S D  T K+L  +    I     IE+V +  K   ++CVS+QVGC + C FC +    ++
Sbjct: 2   SQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCRMGCKFCASTLDGVI 56

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           RNLT+ EIL Q++ A+  +G+                 +ISN+V+MG GEPL NF+NV K
Sbjct: 57  RNLTSGEILSQIMAAQKEIGE-----------------RISNVVLMGSGEPLDNFENVTK 99

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPIN 258
            L + +    L+  +R ITLST G VP I  + ++   + LAISLH+  + LR  ++PI 
Sbjct: 100 FLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLHSPEDLLRKEMMPIA 159

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
            KY ++ L++AC +Y   +N  RITFEY ++KG NDS ++A  L  +LKG    +NLIP 
Sbjct: 160 NKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLSIVLKGKLCHVNLIPV 218

Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           N      Y  S  K+I +F   +K +G  + IR   G DI AACGQL+
Sbjct: 219 NEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQLR 266


>gi|159463592|ref|XP_001690026.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158284014|gb|EDP09764.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 374

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 187/381 (49%), Gaps = 49/381 (12%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
             A+L     +    M   ++W W+       +  + D+ +    LL+++F     ++V 
Sbjct: 15  TNAVLAAFEEENIKPMHALRMWGWLIRNPSATWHDVPDMPKAAVALLDKYFVKFTTKVVK 74

Query: 78  EKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEK------------------SRGTLCV 118
            + S DG T K L+          +++E V +                      R TLCV
Sbjct: 75  CQNSSDGSTTKLLVELQD-----GMQVEAVVMTYDAPSVTAAGAAAAAAARARKRSTLCV 129

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           SSQVGC + C+FC TGT  L  +L A EI+ Q++ AR++                    +
Sbjct: 130 SSQVGCQMGCTFCATGTMGLKGHLNAGEIVEQLVHARAVA-------------------R 170

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-V 237
           I N+V MGMGEPL N++ V+ ++++ +DS      +R +T+ST G +P I ++ E++  V
Sbjct: 171 IRNVVFMGMGEPLNNYEAVRGAVAMMTDSKYFGLRRRHVTVSTVGVIPRIKQLAEDLPGV 230

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            LA+SLHA + +LR  +VP  R Y L+ L++A R Y   S ++R+ +EYVML G+ND   
Sbjct: 231 SLALSLHAPTQELRLQIVPSARAYKLDKLMEAVRSYQANS-SQRVFYEYVMLSGVNDGEE 289

Query: 298 DALNLIKILKGIPAKINLIPFNPW---PGCEYLCSDQKDIVTFSECIK-RSGYSSPIRTP 353
            A  L ++LKG    INLIP+NP     G  +       + TF   ++ + G  + IR  
Sbjct: 290 QAHQLGQLLKGDDVVINLIPWNPIYQPEGPFFEAPRDGSVGTFQSILRHQYGLHTTIRQE 349

Query: 354 RGLDILAACGQLKSLSKRIPK 374
            G DI  A G  K+   R  +
Sbjct: 350 MGQDISGAWGWGKAGWGRAGR 370


>gi|308798845|ref|XP_003074202.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
           tauri]
 gi|116000374|emb|CAL50054.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
           tauri]
          Length = 406

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 100/377 (26%), Positives = 168/377 (44%), Gaps = 66/377 (17%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG---IRDFQGMSDISQEVRHL 63
            SL+G+ + ELE   ++ G+P    + R  Q+   +Y       R     + +S+ +R  
Sbjct: 87  VSLLGLTKRELEALAVERGMP----KFRGKQMADHLYAANGTSARSVDEFTTLSKALRAE 142

Query: 64  L-NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           L      +    +     + DGT K LLR     +     +ET                 
Sbjct: 143 LVAAGVRVGRSSVHHVAAATDGTAKLLLRLDDDRV-----VET----------------- 180

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
                            RNL   EI+ QVL      G                  +++N+
Sbjct: 181 -------------GGFARNLAPHEIVDQVLALEEHFGQ-----------------RVTNV 210

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           V MGMGEPL N  NV K+  + +    +    R IT+ST G   +I ++   ++  +LA+
Sbjct: 211 VFMGMGEPLLNVPNVLKAHEVLNKE--IGIGARHITISTVGVRGSIEKLAYAQLQSVLAV 268

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA + +LR  ++P  + YP+E L+  C  Y  ++  RR+TFEY +L G+ND P  A  
Sbjct: 269 SLHAPNQELRETIIPSAKVYPMEDLLQDCEQYF-IATGRRVTFEYTLLGGVNDQPEHAKE 327

Query: 302 LIKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
           L ++L  + + + +NLIP+NP    ++    +  +  F + +++    + IR  RGL+  
Sbjct: 328 LGRLLYARNLASHVNLIPYNPVDDADFKRPSRATVYAFRDVLEQERVPASIRQTRGLEAA 387

Query: 360 AACGQLKSLSKRIPKVP 376
           AACGQL++  ++     
Sbjct: 388 AACGQLRNAYQKNAMTA 404


>gi|325192828|emb|CCA27229.1| hypothetical protein SELMODRAFT_122498 [Albugo laibachii Nc14]
          Length = 424

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 176/365 (48%), Gaps = 29/365 (7%)

Query: 18  EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77
           +  L       +   +    IW+         F  + ++   ++  L ++F++    + +
Sbjct: 16  QRLLPSFLEQNKFKNIHAQAIWREFSHNINHSFHEIPNLPLRLQQSLRENFTVCTLSLSE 75

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137
           ++IS DGT K L +           +E+V +  K R  LCVSSQVGC + C+FC TGT  
Sbjct: 76  KQISKDGTIKLLFKTQD-----GHGVESVIMKHKGRNMLCVSSQVGCQMGCTFCATGTMG 130

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197
           ++ +L + EIL Q+  A +                     +I N+V MGMGEPL N+D V
Sbjct: 131 IIADLCSGEILEQLAFANTFA-------------------RIRNVVFMGMGEPLQNYDEV 171

Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVP 256
             ++   +   GL+   + +TLST G +  I ++  ++  V LA+SLHA + +LR+ +VP
Sbjct: 172 IAAIKAMTSVFGLA--PKHVTLSTVGVIHRIQQLNRDVPLVRLALSLHAPTQELRSQIVP 229

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
            ++ +PLE L+ A   +      R +  EY MLKGINDS   A  L K+L+     INLI
Sbjct: 230 SSKAFPLEKLMQAIDDHLASREHRVVLIEYCMLKGINDSIETAHLLGKLLQDRSVHINLI 289

Query: 317 PFNPWP-GCEYLCSDQKDIVTFSECIK-RSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374
           P+N      ++     +DI  F   ++      + +R   G+DI  ACGQL   +     
Sbjct: 290 PYNTTDVDAQFSSPSDQDIRNFQSILRQDYNLKATVRENHGMDIEGACGQLALKTTSQHA 349

Query: 375 VPRQE 379
            P + 
Sbjct: 350 TPSKN 354


>gi|154491020|ref|ZP_02030961.1| hypothetical protein PARMER_00937 [Parabacteroides merdae ATCC
           43184]
 gi|154088768|gb|EDN87812.1| hypothetical protein PARMER_00937 [Parabacteroides merdae ATCC
           43184]
          Length = 286

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 161/310 (51%), Gaps = 25/310 (8%)

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           + ++F +      D   S DGT K+L        G    +E+VYIP + R TLCVSSQVG
Sbjct: 1   MEKNFEVGAVPPSDLMKSVDGTIKYLY-----PAGPGNFVESVYIPTEDRATLCVSSQVG 55

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC TG Q   +NL+A EIL Q+                          +++NIV
Sbjct: 56  CKMNCLFCMTGKQGFTKNLSANEILNQI-------------------QSLPETEELTNIV 96

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            MGMGEPL N D + K L I + S G ++S +RIT+ST G    + R  EE    LA+SL
Sbjct: 97  FMGMGEPLDNVDELFKVLEILTASYGYAWSPKRITVSTIGVAKGLKRFLEESDCHLAVSL 156

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+   D R  L+P+ + +P   +I+  + Y   ++ RR++FEY++ K +ND  + A  L+
Sbjct: 157 HSPYPDERRSLMPVEKAFPACDIIETIKQY-DFTHQRRVSFEYIVFKNLNDDLQHAKALV 215

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            +L  +P ++NLI F+  P      SD   +  F + +  +G    IR  RG DI AACG
Sbjct: 216 CLLDKVPCRVNLIRFHAIPNVSLESSDLARMEAFRDTLNAAGIVCTIRASRGEDIFAACG 275

Query: 364 QLKSLSKRIP 373
            L +  K+  
Sbjct: 276 MLSTAKKQQK 285


>gi|187251578|ref|YP_001876060.1| radical SAM enzyme, Cfr family [Elusimicrobium minutum Pei191]
 gi|186971738|gb|ACC98723.1| Radical SAM enzyme, Cfr family [Elusimicrobium minutum Pei191]
          Length = 343

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 183/368 (49%), Gaps = 31/368 (8%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M  E++++ + + G P      R +Q+   +Y  GI D+     +  ++++ L  +F+I+
Sbjct: 1   MNFEKIKDFIKENGFPA----YRIAQVKDAVYKNGITDWNKAVALPADLKNKLKDNFNIL 56

Query: 72  YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
                  + S  D T K LL+         ++IETV +      T+CVS+QVGC + CSF
Sbjct: 57  SFTAAKMQFSDKDRTAKALLKLED-----GLKIETVLMRMGDVWTVCVSTQVGCPVGCSF 111

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TG  +  R+LT EEI  QVL   S +                + ++I+N+V MGMGEP
Sbjct: 112 CSTGKMRFKRDLTDEEISDQVLFWLSYIKQ------------EKLAQRINNVVFMGMGEP 159

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSND 249
           L N+ N  K++   S+   L    R I++STSG       +  +   V LA+SLH+  +D
Sbjct: 160 LFNYLNTVKAVKEISNPDRLGIGMRHISISTSGVADKFHNLAVDLPQVNLALSLHSADDD 219

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            RN +VP+NRK+ LE L  A   Y  ++  + +  EY +++G+ND P     L K + G+
Sbjct: 220 ERNKIVPLNRKFNLETLQKALTEYIAMTGRQ-VFIEYTVVEGVNDRPEHIRLLGKWISGV 278

Query: 310 P----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                  +NLI  N   G     + +K +  F++ ++    S  IR   G DILAACGQL
Sbjct: 279 KDNYLLHVNLIACNMGKG---KTTSEKQVKLFAKGLQGLHISVTIRKSLGNDILAACGQL 335

Query: 366 KSLSKRIP 373
                +  
Sbjct: 336 AVKESKEK 343


>gi|145347191|ref|XP_001418058.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578286|gb|ABO96351.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 369

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 124/381 (32%), Positives = 185/381 (48%), Gaps = 45/381 (11%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY-VRGIRDFQGMSDISQEVRHLL- 64
           + L+GM    L+  ++           R +QI + +Y  R  R  +  S I +E+R  L 
Sbjct: 11  KDLLGMSARALKSIVVD---ECGQPLYRATQIREHLYGARRCRRIEDFSLIPREMRDALV 67

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----------KSRG 114
              +      +    +S  GT K  LR     +G    IE V IP+          ++R 
Sbjct: 68  AGGYRTGRLAVESASVSGCGTGKVSLR-----VGEREVIEAVGIPDASCWRASAEAENRL 122

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           T CVSSQVGC++ C+FC TG Q   RNLT  EI  QV+    L G               
Sbjct: 123 TACVSSQVGCAMKCTFCATGMQGYKRNLTPAEITAQVIELEELYG--------------- 167

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
             +++S +V MGMGEP+ N  +V +++   ++ +G     R IT+ST G   ++ ++ +E
Sbjct: 168 --KRVSQVVFMGMGEPMLNIKSVVQAIRCLNEDVG--IGGRHITVSTVGIPNSLKKLAKE 223

Query: 235 -IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
            + + LAISLHA     R  +VP  + YP+E L++  R Y   +   R+TFEY +L G+N
Sbjct: 224 KLAITLAISLHAPDQHTRAKIVPSAKYYPMEDLLNDARAYFKETGR-RVTFEYTLLAGVN 282

Query: 294 DSPRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           DSP  A  L ++LK   G  A +N+IP+N   G  +       I  F   ++  G +  I
Sbjct: 283 DSPSQAKALSRMLKRKFGTGAHVNIIPWNNIDGINHTRPSGNAIHRFCAQLE-GGVTHTI 341

Query: 351 RTPRGLDILAACGQLKSLSKR 371
           R  RGLD  AACG L    +R
Sbjct: 342 RRTRGLDTNAACGMLTGAFER 362


>gi|313634805|gb|EFS01235.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL N1-067]
          Length = 281

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 110/285 (38%), Positives = 172/285 (60%), Gaps = 19/285 (6%)

Query: 99  GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
               IETV + ++   ++CV++QVGC++ C+FC +G  K  R+LTA EI+ Q++  +   
Sbjct: 1   DGNLIETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY- 59

Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
                      +   ++  ++S++V+MG+GEP  N+DNV   L + +   GL+   R IT
Sbjct: 60  -----------LDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHIT 108

Query: 219 LSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
           +STSG  P I     E+  V LAISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +
Sbjct: 109 VSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKT 168

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDI 334
           N  RITFEY+MLKG+ND  ++AL L  +L      A +NLIP+NP     +Y  S ++D+
Sbjct: 169 NR-RITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDV 227

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
           + F + +K++G +  IR   G DI AACGQL+  SK+I +V  +E
Sbjct: 228 LAFYDTLKKNGINCVIRREHGTDIDAACGQLR--SKQIKRVGIRE 270


>gi|313639429|gb|EFS04292.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL S4-171]
          Length = 281

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 109/291 (37%), Positives = 171/291 (58%), Gaps = 18/291 (6%)

Query: 99  GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
               IETV + ++   ++CV++QVGC++ C+FC +G  K  R+LTA EI+ Q++  +   
Sbjct: 1   DGNLIETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY- 59

Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
                      +   ++  ++S++V+MG+GEP  N+DNV   L + +   GL+   R IT
Sbjct: 60  -----------LDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHIT 108

Query: 219 LSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
           +STSG  P I     E+  V LAISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +
Sbjct: 109 VSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKT 168

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDI 334
           N  RITFEY+MLKG+ND  ++AL L  +L      A +NLIP+NP     +Y  S ++D+
Sbjct: 169 NR-RITFEYIMLKGVNDHKKEALELAGLLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDV 227

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
           + F + +K++G +  IR   G DI AACGQL+S   KR+    R + +   
Sbjct: 228 LAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAA 278


>gi|15230899|ref|NP_188597.1| radical SAM domain-containing protein [Arabidopsis thaliana]
 gi|28393068|gb|AAO41968.1| unknown protein [Arabidopsis thaliana]
 gi|28827394|gb|AAO50541.1| unknown protein [Arabidopsis thaliana]
 gi|332642748|gb|AEE76269.1| radical SAM domain-containing protein [Arabidopsis thaliana]
          Length = 372

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 116/391 (29%), Positives = 181/391 (46%), Gaps = 50/391 (12%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K +S+      E++      GI     +    QIWK++       +  +  +      L
Sbjct: 1   MKLKSVFDAS--EIKSEFESAGINP---KF-AIQIWKYVIQNPDCVWDEIPSLPSAAYSL 54

Query: 64  LNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRG-------- 114
           L+  F  +   +     S DGT  K L++           +E V +   +R         
Sbjct: 55  LHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQ-----NGAFVEAVVMRYDTRLGMLGGKPR 109

Query: 115 ------TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
                 TLC+SSQVGC + C+FC TGT     NLT+ EI+ Q++ A  +           
Sbjct: 110 PGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASRIAD--------- 160

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
                     I NIV MGMGEPL N++ V +++ +   +     S +RIT+ST G V  I
Sbjct: 161 ----------IRNIVFMGMGEPLNNYNAVVEAVRVML-NQPFQLSPKRITISTVGIVHAI 209

Query: 229 ARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            ++  ++  V LA+SLHA   ++R  ++P  R +PL+ L+DA + +   S  ++I  EY+
Sbjct: 210 NKLHNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNS-QQKIFIEYI 268

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKR-SG 345
           ML G+ND  + A  L ++LK     INLIPFNP     ++  S  + +  F + ++    
Sbjct: 269 MLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQGVSRFQKILRETYK 328

Query: 346 YSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376
             + IR   G DI  ACGQL      I K P
Sbjct: 329 IRTTIRKEMGQDISGACGQLVVNQPDIKKTP 359


>gi|330837064|ref|YP_004411705.1| radical SAM enzyme, Cfr family [Spirochaeta coccoides DSM 17374]
 gi|329748967|gb|AEC02323.1| radical SAM enzyme, Cfr family [Spirochaeta coccoides DSM 17374]
          Length = 359

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 183/380 (48%), Gaps = 36/380 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
            SL G+  ++++  L            R  QI  W+  RG   F GMS++S   R  L +
Sbjct: 12  PSLYGLSVQDIQTVL------SLDKPFRARQIRSWL-ARGTTSFTGMSNLSLLERTRLTE 64

Query: 67  HFS-IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI-PEKSRGTLCVSSQVGC 124
            +  I+  E+++EK    G  K  +R     +     +E V +  +  R T C+S QVGC
Sbjct: 65  KYPHILTSEVIEEKTDRTGATKLGIRLYDGLV-----VECVLLVDQDGRKTACLSCQVGC 119

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC TGT  L RNL A EI+ Q +                           S+IV 
Sbjct: 120 AMGCVFCRTGTMGLARNLHAYEIVEQFVHLMKYGTP-------------------SHIVY 160

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEPL N   V  S+   +         RRIT+ST G VP I ++ E  +GV LAISL
Sbjct: 161 MGMGEPLANTKEVFSSVLTLNSPDWFDIGIRRITISTCGIVPGILQLAESGLGVKLAISL 220

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
            A  + LR  L+P+NR +PL  L +    Y       RITFEY ML G+N     A NL 
Sbjct: 221 VAADDQLRTRLMPVNRSFPLIRLKETLVTYQKKEKK-RITFEYCMLGGVNTDETAARNLA 279

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
             +KG+ A +NLIP+NP P   +     +++ +F   ++R G     R  RG  +  ACG
Sbjct: 280 HFMKGLEAIVNLIPWNPAPDLPWQTPSNREMDSFVSTLQRLGVPCTRRFSRGRGVDGACG 339

Query: 364 QLKSLSKRIPKVPRQEMQIT 383
           QL ++ + +  +P ++ Q T
Sbjct: 340 QL-AVPQNMRTLPPEDTQGT 358


>gi|282890718|ref|ZP_06299238.1| hypothetical protein pah_c026o038 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499311|gb|EFB41610.1| hypothetical protein pah_c026o038 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 364

 Score =  318 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 134/375 (35%), Positives = 200/375 (53%), Gaps = 32/375 (8%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF-QGMSDISQEVR 61
             +K S++    E     +  I       R+  S I++  +  G  +      + +QE+R
Sbjct: 1   MTEKISILAHTEE---SFIHAIAERLGKGRVHASLIYQEFFRSGSLNAAHPAFNNAQEIR 57

Query: 62  HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             + ++ S+    + D K   DG T K+L           +E+E V IP +S GTLC+SS
Sbjct: 58  TAILENVSVSQLSLGDRK--EDGKTGKFL-----GKTADGLEVEFVQIPMQSGGTLCISS 110

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C+FC TG   L+RNLT EEI+ QV LA+                         
Sbjct: 111 QVGCQMGCAFCETGKMGLLRNLTTEEIVSQVYLAKHHNQF-----------------SFR 153

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VM 238
           N+V MGMGEPL NFD V +++ I +D  G  F +RR+T+STSG V  I ++    G    
Sbjct: 154 NLVFMGMGEPLDNFDAVMQAVRIFNDPKGFGFGRRRMTISTSGCVDGIDKLANLGGQAPN 213

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+S++A +++LRN L+P+NRKY L+ L +A + Y   +  + I   YV+L+G ND    
Sbjct: 214 LAVSINAPTDELRNRLMPVNRKYDLQTLYEAMQGYCTKTGRQ-ILIAYVLLQGQNDQIEH 272

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           AL L + LKG+  KINLIP+NP     +   D   I  F++ +++ GY + +R  +G DI
Sbjct: 273 ALQLSEYLKGLNVKINLIPYNPQSRDRFQAPDLNTIEAFTQSLRQKGYYTLLRLTKGQDI 332

Query: 359 LAACGQLKSLSKRIP 373
           +AACGQL +L  R  
Sbjct: 333 MAACGQLGNLKLRKQ 347


>gi|159487459|ref|XP_001701740.1| predicted Fe-S-cluster redox enzyme [Chlamydomonas reinhardtii]
 gi|158280959|gb|EDP06715.1| predicted Fe-S-cluster redox enzyme [Chlamydomonas reinhardtii]
          Length = 502

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 122/395 (30%), Positives = 174/395 (44%), Gaps = 61/395 (15%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV-----RGIRDFQGM----SDISQE 59
           L  +   ELE      G        R  QIW+W+Y        +R  +      +  + +
Sbjct: 95  LKALTLPELEAWCAAQGEAAPAN--RALQIWRWMYADPPAGSWVRSLEETMGRQNGFAAK 152

Query: 60  VRHLLNQHFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
               +  H S+    ++     + DGTRK +         G   IETV IP         
Sbjct: 153 FVEKVGPHVSLEGGLKLSQVVRASDGTRKLVFTLLGGEAAGG-SIETVLIP--------- 202

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
              VGC++ C FCYTG   L+ NL+  +I+ QV+ AR  L                    
Sbjct: 203 --VVGCAMNCQFCYTGRMGLLGNLSTAQIVEQVVEARRFLAQEGDRT------------P 248

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           ++N+V MGMGEPL N + V  +  I S  +GL  S  +IT+ST G VP +  V     V 
Sbjct: 249 LTNLVFMGMGEPLHNTEAVLAAADIVSHYLGLHISHNKITISTVGLVPEMRAVLARTRVQ 308

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-------------------- 278
           +A+SLHA ++++R+ +VP+NR+Y L  L  A                             
Sbjct: 309 VALSLHATTDEVRDWIVPVNRRYDLATLTAALEEMFPKEEEAAIGSLSSSDEAAAAAAGK 368

Query: 279 -----ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKD 333
                 R +  EY ML GIND+  DA  L  +L+ +  K+NLI FNP  G  +  S  +D
Sbjct: 369 GSSKEGRSLLVEYTMLHGINDTLDDAHRLADMLRRVNCKVNLIVFNPHKGTRFQPSTDED 428

Query: 334 IVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           I  F   + RSG    IR  RG D +AACGQL ++
Sbjct: 429 ISAFRSALIRSGMVCTIRDSRGDDEMAACGQLGNV 463


>gi|313888523|ref|ZP_07822190.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845552|gb|EFR32946.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 333

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 110/344 (31%), Positives = 169/344 (49%), Gaps = 27/344 (7%)

Query: 29  RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRK 87
           +    R +Q++ + + +   D +  S++S +   L+     I   EI     S  D TRK
Sbjct: 13  KEKAFRGTQLFTFFHDKKRYDVEN-SNLSAKAISLIKDE-EINKIEIFKSFDSDLDETRK 70

Query: 88  WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
            L R     +     IE V +  K   + CVS+QVGC + C FC +    L+RNL+A E+
Sbjct: 71  MLFRLKDGNL-----IEGVLMEYKHGYSQCVSTQVGCRMGCDFCASTKSGLLRNLSAGEM 125

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
           L QV    +                     KISN ++MG GEPL NFD V + + +  D 
Sbjct: 126 LGQVYEIEN-----------------KYNIKISNFILMGSGEPLDNFDEVIRFIKLLHDE 168

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
            G + S R IT+ST G    I  + +  + + LA+SLH  ++  R++L+PINR++ L  L
Sbjct: 169 KGHNTSYRNITISTCGVADKIYDLADLNLPINLAVSLHQTNDKDRSVLMPINRRFNLVEL 228

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
             +  +Y   +N  RITFEY M+K  ND  ++   L    K +   INLIP NP    + 
Sbjct: 229 KKSLEYYVKKTN-NRITFEYTMIKNQNDGIKNIDELYNFAKNLKCHINLIPLNPIEEFDE 287

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
               + +I  F   +++ G++  IR   G DI A+CGQL+   +
Sbjct: 288 KRPSKAEINDFKNKLEKKGFNVTIRRELGSDISASCGQLRRKIE 331


>gi|281202992|gb|EFA77193.1| putative ribosomal RNA large subunit methyltransferase N
           [Polysphondylium pallidum PN500]
          Length = 361

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 148/372 (39%), Positives = 202/372 (54%), Gaps = 64/372 (17%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           K ++LIG+ +E+L + L ++G        R  QIW WIY +G ++    S++S   + LL
Sbjct: 43  KTKNLIGISKEDLTKQLTELG---DFQSYRIDQIWSWIYNKGQKNIDNFSNLSNVQKSLL 99

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            +++ I Y  +  +++S DGTRK L+ F         ++ETV+IPE  RGTLCVSSQVGC
Sbjct: 100 KEYYHIDYGTLDSDQLSKDGTRKILVGFS------GDQVETVFIPEARRGTLCVSSQVGC 153

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +  C FC+TGTQ+LVRNL   EIL Q ++ARSL+ DF    +          R ISN+V 
Sbjct: 154 TFGCKFCFTGTQRLVRNLNVSEILGQFMMARSLMNDFGHTTE---------KRLISNVVF 204

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISL 243
           MGMGEPL N+     +L I +D  GLS SK RIT+STSG VP I R+G+E   + LAISL
Sbjct: 205 MGMGEPLMNYRAASAALRIMTDPNGLSLSKSRITVSTSGVVPLIERLGKEFPGIGLAISL 264

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +N  R+ +VPIN+++P+E LI  C  +  L N  +IT          D P       
Sbjct: 265 HASNNKTRSEIVPINQQWPIEELIKTCIEFSKL-NTNKITI---------DKPE------ 308

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
                                         I  F+  I  +G    IR  RG DILAACG
Sbjct: 309 -----------------------------KIKEFASIIANAGLKVTIRQSRGQDILAACG 339

Query: 364 QLKSLSKRIPKV 375
           QLK+ S ++ K 
Sbjct: 340 QLKTESVKVKKT 351


>gi|255994247|ref|ZP_05427382.1| radical SAM enzyme, Cfr family [Eubacterium saphenum ATCC 49989]
 gi|255993915|gb|EEU04004.1| radical SAM enzyme, Cfr family [Eubacterium saphenum ATCC 49989]
          Length = 342

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 183/365 (50%), Gaps = 35/365 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           +SL GM  +E+E  +L +G        R  QI + +   G+     +  IS++ R  L+ 
Sbjct: 2   KSLAGMNLKEIESVVLSLG----EKAYRAKQILEAV-NNGVDSIDKIHTISKDFRAKLSN 56

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            ++I    +  + +S  DG+ K+LL+           IE + +  K   +LC+SSQ GC 
Sbjct: 57  KYTISSITVEKKLVSKRDGSIKYLLKTSDGKF-----IEAMSMVYKHGVSLCISSQAGCR 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G + L RNL+A E++ QVL+ +                      KIS IV+M
Sbjct: 112 MGCTFCSSGKEGLERNLSAFEMIEQVLILKRGFD------------------KISGIVVM 153

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
           G GEP  N+D +KK L   ++   L   KR IT+ST G    I +  ++   + LA SLH
Sbjct: 154 GTGEPFDNYDELKKFLKRITNEEFLRIGKRHITVSTCGIEEGIKKFSKDFRSINLAFSLH 213

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A SND+R  ++P N+   ++ +I     +  ++  RR+TFEY+++KG+NDS  +   L +
Sbjct: 214 AASNDIRKKIMPGNK-LSVDDIIGLASEHAKIT-RRRVTFEYILIKGVNDSMAECELLCR 271

Query: 305 ILKGIPAKINLIPFNPWP---GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
            LKGI   +NLI  N         +   D K +  +   +++      IR   G DI  A
Sbjct: 272 KLKGINCLVNLIRLNGSSYEGDNRFSSPDMKTVKQWQNELEKRHIQVTIRRTIGEDIQGA 331

Query: 362 CGQLK 366
           CGQL+
Sbjct: 332 CGQLR 336


>gi|326434869|gb|EGD80439.1| radical SAM domain-containing protein [Salpingoeca sp. ATCC 50818]
          Length = 517

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 118/394 (29%), Positives = 189/394 (47%), Gaps = 65/394 (16%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
           G++ EE      K+GI  +H      ++W+ I  RG+ D + + ++ + +  L+ + F I
Sbjct: 18  GLVLEE----CTKLGINHKH----AYKMWRHIIARGVTDVEEIPELPKALYKLVKEKFVI 69

Query: 71  IYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPE------------------- 110
              ++   K S D  T K L+R     +     +ETV +                     
Sbjct: 70  TTSKLESFKTSADESTTKLLIRLQDGAL-----VETVIMRYGRVELRNFPSDRQRRTEDG 124

Query: 111 ------KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164
                 K R T+CVSSQVGC + C+FC TGT  L+ NLTA EIL Q+  A ++       
Sbjct: 125 ETVFASKERATVCVSSQVGCKMGCTFCATGTMGLLSNLTAGEILEQLYHANTV------- 177

Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
                        KI N+V MGMGEPL N+D V  ++   +D    S S  RI +ST G 
Sbjct: 178 ------------EKIRNVVFMGMGEPLDNYDAVVMAVRGMTDVQRFSLSPSRIAVSTVGV 225

Query: 225 VPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL-----SN 278
           VP + ++ E+I  V LA+SLHA + +LR  +VP  + + ++ ++ A  ++        S 
Sbjct: 226 VPKMLKMAEDIPQVGLALSLHAPTQELRAQIVPTAKAWHIDRIMAAMDNFIEHRSQVASR 285

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTF 337
              +  EYV++  +N S   A  L ++L+G    +N+IP+NP     +Y     + +  F
Sbjct: 286 KSHVLIEYVLIDNVNSSEEVAHQLGRLLEGREVILNVIPYNPTDVPHDYKAPSSETLEKF 345

Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           +  ++     + +R   G D+ AACGQL   S+R
Sbjct: 346 NAVLREYDLRTIVRQELGQDVNAACGQLVISSQR 379


>gi|255080924|ref|XP_002504028.1| predicted protein [Micromonas sp. RCC299]
 gi|226519295|gb|ACO65286.1| predicted protein [Micromonas sp. RCC299]
          Length = 485

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 114/380 (30%), Positives = 174/380 (45%), Gaps = 28/380 (7%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQG----------- 52
           L + SL    R  L   L   G+  +          + I    +RD +            
Sbjct: 7   LTRTSLFD--RSALVAFLED-GLGPKRKDAAAKH-CRAILHAAVRDAEAGLDAVNLSESR 62

Query: 53  MSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPE- 110
           +  I +  R  + + F++I   I D + S DG T K ++            +E+V +   
Sbjct: 63  VPGIPKFARDQIPERFALITTTIADCQTSKDGSTTKMVVELQD-----GHRVESVVMRHD 117

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
           K R TLCVSSQVGC + C+FC TGT   + NLT+ EIL Q++ A  L  D      +  +
Sbjct: 118 KGRVTLCVSSQVGCKMGCTFCATGTLGELGNLTSGEILEQLVHANRLFNDDGTGAGLRRV 177

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
              + G  + N+V MGMGEPL N+D V  ++   +D    + +  R+T+ST G VP + R
Sbjct: 178 SGTAHG--VRNLVFMGMGEPLNNYDAVVGAIGPMTDPNAFALAPSRVTVSTVGVVPKMRR 235

Query: 231 V-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  +  GV LA+SLHA +  LR  +VP    Y L  ++ A   Y       R   EY +L
Sbjct: 236 LVRDAPGVCLALSLHAPNQRLREKIVPTATAYKLPDILSALDEYLATGPKVRTMIEYCVL 295

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIK--RSGY 346
            G+ND+   A  L ++++     +NLIP+NP      +     +D+      +       
Sbjct: 296 GGVNDTTECARELGELMRHRDVIVNLIPYNPTATPMGHSPPKMEDVRAMCAVLTGPEFNQ 355

Query: 347 SSPIRTPRGLDILAACGQLK 366
            + +R   G DI  ACGQL 
Sbjct: 356 FTTVRHEMGQDISGACGQLA 375


>gi|282895427|ref|ZP_06303564.1| Putative uncharacterized protein [Raphidiopsis brookii D9]
 gi|281199460|gb|EFA74323.1| Putative uncharacterized protein [Raphidiopsis brookii D9]
          Length = 300

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 107/309 (34%), Positives = 155/309 (50%), Gaps = 31/309 (10%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
           G   +EL   + + G P      R  Q+  WIY  G+     +S   +  R  +    SI
Sbjct: 22  GASVDELTTWVQQQGQPG----YRGKQLHNWIYHHGVHRISDISVFPKTWREQVTD-VSI 76

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
               +  +  + DGT K+LL      I     IETV IP   R T+CVS+QVGC + C F
Sbjct: 77  GRSSVNYQCSATDGTVKYLLNLADGEI-----IETVGIPSDKRLTVCVSTQVGCPMACDF 131

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TG     RNL   EI+ QVL  +                     +++S++V MGMGEP
Sbjct: 132 CATGKGGFKRNLNRGEIVDQVLTVQE-----------------DFQQRVSHVVFMGMGEP 174

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSND 249
           L N +NV  +L   +    L   +R +T+ST G    I ++ E  + V LA+SLHA +  
Sbjct: 175 LLNTENVILALKCLNQD--LGIGQRSLTVSTVGIRDRIRQLAEHHLQVTLAVSLHAPNQI 232

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           LR  ++P  + YP+E L+  CR Y  ++   R+TFEY++L G+ND P  AL L + L+G 
Sbjct: 233 LREQIIPSAKTYPIEQLLAECRQYVEITGR-RVTFEYILLSGVNDLPEQALELSQRLRGF 291

Query: 310 PAKINLIPF 318
            + +NLIP 
Sbjct: 292 QSHVNLIPL 300


>gi|302339631|ref|YP_003804837.1| radical SAM enzyme, Cfr family [Spirochaeta smaragdinae DSM 11293]
 gi|301636816|gb|ADK82243.1| radical SAM enzyme, Cfr family [Spirochaeta smaragdinae DSM 11293]
          Length = 356

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 113/363 (31%), Positives = 176/363 (48%), Gaps = 33/363 (9%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
           G+  +E+                R  Q+++ +  +GI  +  +S +S   R+ L++  S+
Sbjct: 17  GLFPDEICRVF------HLSPAFRGKQVFRAL-QQGISSWTQISTLSLNDRNRLSEEASL 69

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI-PEKSRGTLCVSSQVGCSLTCS 129
                     + DG+ K LL            +E+V +  E  R T C+SSQVGC++ C+
Sbjct: 70  FSSVPTRFDEASDGSAKLLLEL-----IDGRFVESVLLVDESGRKTACLSSQVGCAMRCA 124

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TGT  L+RNL+  EIL Q    ++  G+                  ISNIV MGMGE
Sbjct: 125 FCRTGTMGLLRNLSTGEILEQYYHLKNRYGE------------------ISNIVFMGMGE 166

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSN 248
           PL N   V+K+++I +   G     R+IT+ST G V  I  + E  +   LA SL     
Sbjct: 167 PLANLPPVQKAIAILNHPEGPGIGIRKITVSTCGIVDGIRSLSETALIPRLACSLVTADP 226

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
            LR  L+P+++  PL  L  A   Y   S   RIT E V+L GIN +   A  +    +G
Sbjct: 227 KLRQRLMPVSKANPLPELKQALHFYQEKSKR-RITLECVLLGGINSAEEQAQGVADFARG 285

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +   +N+IP+NP  G ++     ++I+ + + ++++G +   R  RG +I  ACGQL  L
Sbjct: 286 LSVLVNVIPWNPTEGLDFRPPSDQEIIRYRKRLEQAGIAVSRRYRRGSEINGACGQLAVL 345

Query: 369 SKR 371
             R
Sbjct: 346 ENR 348


>gi|302807670|ref|XP_002985529.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii]
 gi|300146735|gb|EFJ13403.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii]
          Length = 374

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 122/381 (32%), Positives = 175/381 (45%), Gaps = 50/381 (13%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           L+  L + GI   HV      IW+ +          +  +   +  LL   F  +   + 
Sbjct: 12  LKAELQRHGIKPLHVYT----IWRHVMDHPNAALHQVPGLPGALYPLLRTRFKALTSTLA 67

Query: 77  DEKISCDG-TRKWLLRFPARCIGGPVEIETVYI--------------PEKSRGTLCVSSQ 121
               S +G T K LL+  +        +ETV +              P   R TLCVSSQ
Sbjct: 68  AHSTSANGSTTKLLLQLQS-----GQSVETVIMRHHGGAGKYAGGPRPGSDRATLCVSSQ 122

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + CSFC TGT   V NLTA EI+ Q + A  +                     I N
Sbjct: 123 VGCKMGCSFCATGTMGFVANLTAGEIVEQYVHASRMS-------------------PIRN 163

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240
           IV MGMGEPL N+++V +++   +       S  RIT+ST G VP I  +  +  GV LA
Sbjct: 164 IVFMGMGEPLNNYNSVVQAVQTLT-GRCFGLSPSRITISTVGIVPRILSLAGDLPGVNLA 222

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +  LR  +VP +R + L+ L+ A   Y   SN   +  EYVML+ +NDS +DA 
Sbjct: 223 LSLHAPTQALRCQIVPASRAFTLDKLMAAVDAYQASSNRT-LFIEYVMLQDVNDSSQDAR 281

Query: 301 NLIKILKGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDI 358
            L  +L+     +NLIP+N      +Y  +    +  F + ++   G  + +R   G DI
Sbjct: 282 QLGCLLRDRKVVLNLIPYNHTFVVGDYRATPADRVHHFQKIVREEFGIRTTVRQEMGQDI 341

Query: 359 LAACGQLKSLSKRIPKVPRQE 379
             ACGQL    K++   P  E
Sbjct: 342 DGACGQLA--LKKLKASPDME 360


>gi|182412196|ref|YP_001817262.1| radical SAM protein [Opitutus terrae PB90-1]
 gi|205829633|sp|B1ZQZ5|RLMN1_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 1;
           AltName: Full=23S rRNA m2A2503 methyltransferase 1
 gi|177839410|gb|ACB73662.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1]
          Length = 355

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 170/370 (45%), Gaps = 31/370 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           + SL  +  ++L   L + G  + H      ++ +  Y R     +        +   L 
Sbjct: 2   RPSLAELSVDDLASVLAQWGYKRSH----AGRVLREYYARCGELTEAGRPWPAGLLERLR 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123
             F+     +   +++ DGT K LLR           +E V +P+    R   C+SSQVG
Sbjct: 58  IEFAPGGTALAARQVAADGTTKLLLRL-----ADGRTVEAVLMPDYRADRAAGCLSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC T      RNLTA E++ Q L  R                  S GRK+  +V
Sbjct: 113 CAMGCDFCATAQSGFERNLTAGEMVEQFLALRRE--------------AASAGRKLQTVV 158

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242
            MGMGEPL N D V  ++   +D+       R++T+ST G VP I  +   ++G+ LA+S
Sbjct: 159 FMGMGEPLLNLDAVLTAVRRIADNTYGGLGWRQVTVSTVGLVPGIDALTAADLGINLAVS 218

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LHA  +  R  L+P  R++ +  ++ A   +   S  R +  +Y +LKG+NDS   A  L
Sbjct: 219 LHAPDDATRAALLPAGRRFAIADILAAVDRFQA-SRGRPVIIQYCLLKGVNDSAAHARML 277

Query: 303 IKILKGIPAKINLIPFNPW----PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
             ++      +NL+ +NP      G  Y  S  +    F   ++  G  + +R  RG DI
Sbjct: 278 AAVIGSRRMHVNLLHYNPTGLSLRGVRYEPSGDEAAAQFLAELRARGVVTHLRRSRGPDI 337

Query: 359 LAACGQLKSL 368
            AACGQL++ 
Sbjct: 338 DAACGQLRAK 347


>gi|190150594|ref|YP_001969119.1| hypothetical protein APP7_1325 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|189915725|gb|ACE61977.1| hypothetical protein APP7_1325 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
          Length = 274

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 116/270 (42%), Positives = 162/270 (60%), Gaps = 20/270 (7%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K +L+ + R+E+ E   ++G        R  Q+ KWIY  G  +F  MS+I++ +R  L
Sbjct: 25  EKINLMNLTRQEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            Q   I  PE+  E+ S DGT KW ++          +IETVYIPE  R TLCVSSQVGC
Sbjct: 81  KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +L C FC T  Q   RNLT  EI+ QV  A  ++G+F            +  R I+N+VM
Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 184

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N +NV  ++ I  D      SKRR+TLST+G VP +  + E+I V LAISLH
Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           A +++LR+ ++PIN+KY ++ML+D+   YP
Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYP 274


>gi|289612225|emb|CBI60152.1| unnamed protein product [Sordaria macrospora]
          Length = 278

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 138/270 (51%), Positives = 183/270 (67%), Gaps = 14/270 (5%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           +  L+G+ + E+  AL   G   R  ++R  QIW WIY RG  +F  M+DI++     L+
Sbjct: 23  RTDLVGLSKPEIRAALEAAGFDARQAKLRAKQIWHWIYNRGATEFSAMTDIAKAQHPTLD 82

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF I  P + + ++S DGTRKWLL  P        + E V+IP+  RGTLCVSSQVGC+
Sbjct: 83  KHFVIGRPNVKEAQVSTDGTRKWLLTSPD-----GQDYEMVFIPDADRGTLCVSSQVGCT 137

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C+FC+TGT +LVRNLT  EI+ QV+LAR  LG++P   +         GR ++NIVMM
Sbjct: 138 LNCTFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPSQPE---------GRMLTNIVMM 188

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL NFD V+ +LS+  D  GL+ SKRRITLSTSG VP +AR GEEIGV LA+SLHA
Sbjct: 189 GMGEPLYNFDAVRDALSVVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 248

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG 275
           V+ ++R+ +VP+NRKY +E L+ AC  YPG
Sbjct: 249 VTKEVRDEIVPLNRKYGIEELLQACADYPG 278


>gi|302810701|ref|XP_002987041.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii]
 gi|300145206|gb|EFJ11884.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii]
          Length = 374

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 123/381 (32%), Positives = 175/381 (45%), Gaps = 50/381 (13%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           L+  L + GI   HV      IW+ +          +  +   +  LL   F  +   + 
Sbjct: 12  LKAELQRHGIKPLHVYT----IWRHVMDHPNAALHQVPGLPGALYPLLRTRFKALTSTLA 67

Query: 77  DEKISCDGTR-KWLLRFPARCIGGPVEIETVYI--------------PEKSRGTLCVSSQ 121
               S +GT  K LL+  +        +ETV +              P   R TLCVSSQ
Sbjct: 68  AHSTSANGTTTKLLLQLQS-----GQSVETVIMRHHGGAGKYAGGPRPGSDRATLCVSSQ 122

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + CSFC TGT   V NLTA EI+ Q + A  +                     I N
Sbjct: 123 VGCKMGCSFCATGTMGFVANLTAGEIVEQYVHASRMS-------------------PIRN 163

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240
           IV MGMGEPL N+++V +++   +       S  RIT+ST G VP I    G+  GV LA
Sbjct: 164 IVFMGMGEPLNNYNSVVQAVQTLT-GRCFGLSPSRITISTVGIVPRILSVAGDLPGVNLA 222

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +  LR  +VP +R + L+ L+ A   Y   SN   +  EYVML+ +NDS +DA 
Sbjct: 223 LSLHAPTQALRCQIVPASRAFTLDKLMAAVDAYQASSNRT-LFIEYVMLQDVNDSSQDAR 281

Query: 301 NLIKILKGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDI 358
            L  +L+     +NLIP+N      +Y  +    +  F + ++   G  + +R   G DI
Sbjct: 282 QLGCLLRDRKVVLNLIPYNHTFVVGDYRATPADRVHHFQKIVREEFGIRTTVRQEMGQDI 341

Query: 359 LAACGQLKSLSKRIPKVPRQE 379
             ACGQL    K++   P  E
Sbjct: 342 DGACGQLA--LKKLEASPDME 360


>gi|225428987|ref|XP_002265287.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147817733|emb|CAN60150.1| hypothetical protein VITISV_044331 [Vitis vinifera]
 gi|296083052|emb|CBI22456.3| unnamed protein product [Vitis vinifera]
          Length = 372

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 107/368 (29%), Positives = 165/368 (44%), Gaps = 48/368 (13%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           EL       GI    +      IWK++      D+  ++ +      LL  HF      +
Sbjct: 11  ELRRQFHSAGISPNFIPF----IWKYVVQNPNCDWDDITSLPSAAYPLLRSHFKPSTSSL 66

Query: 76  VDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVSS 120
                S D  T K L++           +E V +   +R               TLC+SS
Sbjct: 67  HTVIDSSDNVTTKLLIKLQ-----NGSFVEAVIMRYDTRLGKYGGKPRPGGPRSTLCISS 121

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC TG+     NL++ EI+ Q++ A                       +I 
Sbjct: 122 QVGCKMGCKFCATGSMGFKSNLSSGEIVEQLVHASHFS-------------------QIR 162

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           N+V MGMGEPL N+  + +++ I         S ++IT+ST G +  I ++  +   + L
Sbjct: 163 NVVFMGMGEPLNNYSALVEAIHIM-QGSPFQLSPKKITVSTVGIIHAINKLQSDLPNLNL 221

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA   D+R  ++P  R +PLE L+D  R Y   S  ++I  EY+ML  +ND  + A
Sbjct: 222 AVSLHAPVQDIRCQIMPAARAFPLEKLMDTLRTYQTNS-GQKIFIEYIMLDEVNDEEQHA 280

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKR-SGYSSPIRTPRGLD 357
             L K+L+     +NLIPFNP     Y   S ++ +  F + ++      + +R   G D
Sbjct: 281 HQLGKLLETFQVVVNLIPFNPIGNLSYFKTSSEQKVARFQKILRGTYNIRTTVRKQMGQD 340

Query: 358 ILAACGQL 365
           I  ACGQL
Sbjct: 341 ISGACGQL 348


>gi|257458205|ref|ZP_05623359.1| radical SAM enzyme, Cfr family [Treponema vincentii ATCC 35580]
 gi|257444499|gb|EEV19588.1| radical SAM enzyme, Cfr family [Treponema vincentii ATCC 35580]
          Length = 348

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 114/362 (31%), Positives = 170/362 (46%), Gaps = 33/362 (9%)

Query: 11  GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70
           GM+ EE+              R ++ QI++WI  RG   F  M+++  + R  L   ++ 
Sbjct: 16  GMLPEEIATVC------NLPQRFQSVQIFQWI-ARGCTSFAEMTNLPLKERERLASVYTP 68

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCS 129
                       DGT K         +     IETV + +K  R T CVS QVGC + C+
Sbjct: 69  RNTVCETVLKDPDGTVKL-----GIGLYDGSSIETVLLFDKHERRTACVSCQVGCPMGCT 123

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG    +RNL+  EI+ Q L    + G                  K+ NIV MGMGE
Sbjct: 124 FCQTGQLGCLRNLSPNEIVEQFLHLEKICG------------------KLDNIVFMGMGE 165

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSN 248
           PL N D++ K++++ +   G + S RRITLSTSG    I  + E ++ + LA+SL     
Sbjct: 166 PLLNLDSIAKTIAVLTHPKGRNLSHRRITLSTSGICKGIYELAERQLDIRLAVSLTTADE 225

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
            LR  L+P+ +  PL  L  A R++   ++  R+T E  +LK +N S + A  +    +G
Sbjct: 226 ALRTTLMPVTKANPLSELKKAIRYFNDKTDK-RVTLELALLKDVNTSYKAAQQVRDFAEG 284

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +   INLIP+NP     Y      +I +F   +     +  +R  RG  I  ACGQL   
Sbjct: 285 LNVHINLIPWNPVQQLPYSTPSDSEIRSFYNYLTAENLNVTVRQKRGRTIGGACGQLGKK 344

Query: 369 SK 370
            +
Sbjct: 345 GR 346


>gi|224060769|ref|XP_002300266.1| predicted protein [Populus trichocarpa]
 gi|222847524|gb|EEE85071.1| predicted protein [Populus trichocarpa]
          Length = 373

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 175/380 (46%), Gaps = 48/380 (12%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
            ++     K GI    +      IWK++      ++  + D+      LL   F      
Sbjct: 10  PDVRAEFEKAGINTHFIPF----IWKYVIKNPNCEWDDIPDLPSAAYSLLRSKFKTSTSS 65

Query: 75  IVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVS 119
           +     S DG T K L++           +E V +   +R               TLC+S
Sbjct: 66  VDSVINSNDGVTTKLLVKLQ-----NGAFVEAVIMRYDTRLGKYCGKPRPGGPRSTLCIS 120

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC + C FC TG+     NL++ EI+ Q++ A  L                    +I
Sbjct: 121 SQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHASCLS-------------------QI 161

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VM 238
            N+V MGMGEPL N+  + +++      +    S +RIT+ST G +  I ++ +++  + 
Sbjct: 162 RNVVFMGMGEPLNNYSALVEAVRAM-SGVPFQLSPKRITVSTVGIIHAINKLHKDLPGLN 220

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA   D+R  ++P  R +PLE L+DA + Y   S   +I  EY+ML G+ND  + 
Sbjct: 221 LAVSLHAPVQDVRCQIMPAARAFPLEKLMDALQVYQKNSMQ-KIFIEYIMLDGVNDEEQH 279

Query: 299 ALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGL 356
           A  L K+L+     +NLIPFNP     ++  S ++ ++ F + ++  +   + +R   G 
Sbjct: 280 AHQLGKLLETFDVVVNLIPFNPIGSLSQFRTSSEEKVLRFQKILRGVNNIRTTVRKQMGQ 339

Query: 357 DILAACGQLKSLSKRIPKVP 376
           DI  ACGQL        K P
Sbjct: 340 DISGACGQLVVNLPDEKKPP 359


>gi|9294428|dbj|BAB02548.1| unnamed protein product [Arabidopsis thaliana]
          Length = 382

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 114/391 (29%), Positives = 183/391 (46%), Gaps = 40/391 (10%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K +S+      E++      GI     +    QIWK++       +  +  +      L
Sbjct: 1   MKLKSVFDAS--EIKSEFESAGINP---KF-AIQIWKYVIQNPDCVWDEIPSLPSAAYSL 54

Query: 64  LNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRG-------- 114
           L+  F  +   +     S DGT  K L++           +E V +   +R         
Sbjct: 55  LHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQ-----NGAFVEAVVMRYDTRLGMLGGKPR 109

Query: 115 ------TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
                 TLC+SSQVGC + C+FC TGT     NLT+ EI+ Q++ A  +        +I 
Sbjct: 110 PGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASRI----ADIRNIV 165

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
            M++P       +    GMGEPL N++ V +++ +   +     S +RIT+ST G V  I
Sbjct: 166 FMLLPW-----FDDCDQGMGEPLNNYNAVVEAVRVML-NQPFQLSPKRITISTVGIVHAI 219

Query: 229 ARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            ++  ++  V LA+SLHA   ++R  ++P  R +PL+ L+DA + +   S  ++I  EY+
Sbjct: 220 NKLHNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNS-QQKIFIEYI 278

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKR-SG 345
           ML G+ND  + A  L ++LK     INLIPFNP     ++  S  + +  F + ++    
Sbjct: 279 MLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQGVSRFQKILRETYK 338

Query: 346 YSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376
             + IR   G DI  ACGQL      I K P
Sbjct: 339 IRTTIRKEMGQDISGACGQLVVNQPDIKKTP 369


>gi|325971942|ref|YP_004248133.1| radical SAM enzyme, Cfr family [Spirochaeta sp. Buddy]
 gi|324027180|gb|ADY13939.1| radical SAM enzyme, Cfr family [Spirochaeta sp. Buddy]
          Length = 361

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 119/362 (32%), Positives = 174/362 (48%), Gaps = 33/362 (9%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           SL G+  E + E L               QI+ W+ V+G+  F+ M+D+ +  R  L   
Sbjct: 10  SLYGLEAETIAEIL------SLSKSFYAKQIFNWL-VKGVYSFEAMTDLPKAERERLASL 62

Query: 68  FSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI-PEKSRGTLCVSSQVGCS 125
            S      I        G  K  +R     +     IE V +  +K R T C+SSQVGC+
Sbjct: 63  MSSACSSTIHTCDTDETGATKMGVRLHDGKV-----IECVLLVDKKGRHTACLSSQVGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
             C+FC TGT  L+RNL+AEEI+ Q +   S+                     I++IV M
Sbjct: 118 QGCTFCKTGTMGLLRNLSAEEIIEQYIHLLSVSKQ-----------------PITHIVYM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N   V +S+    +    + S RRIT+ST G VP I ++ E+ + V LA+SL 
Sbjct: 161 GMGEPLANIAAVTRSIRYFHNPKTFNLSLRRITVSTCGIVPGILKLAEQKLPVKLAVSLV 220

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  N LR+ ++P+N+ + +  L  A  HY  L   +R T EY +L   N     A  L  
Sbjct: 221 SADNRLRDRIMPVNKAWDIMALKKALLHYQRL-GGKRFTIEYCLLGNTNTDETSAKKLAS 279

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            +K +   +NLIP+NP  G  Y    +++I  F+  + R   +   R  RG +I  ACGQ
Sbjct: 280 YVKDLDVIVNLIPWNPAEGLPYKTPTEEEIDYFALQLDRLHVNYTRRRSRGREINGACGQ 339

Query: 365 LK 366
           L 
Sbjct: 340 LA 341


>gi|167526355|ref|XP_001747511.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773957|gb|EDQ87591.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1527

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 111/368 (30%), Positives = 177/368 (48%), Gaps = 58/368 (15%)

Query: 38  IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARC 96
           +W+ I   G+ + + + ++ +++  ++ + F++    +V E+ S D T  K L+      
Sbjct: 604 MWRAILHNGVTNVRDIPELPKKLYQVIEEKFALTTSRLVKEETSADNTTTKLLIELQD-- 661

Query: 97  IGGPVEIETVYIPE-------------------------KSRGTLCVSSQVGCSLTCSFC 131
                +IETV +                           K R T+CVSSQVGC + C+FC
Sbjct: 662 ---GAQIETVIMRYGRFELRNFPEDAQKKSSDGEVSFVSKERATVCVSSQVGCQMGCTFC 718

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            TGT  L+ NL A EIL Q+  A  +                    KI N+V MGMGEPL
Sbjct: 719 ATGTMGLMSNLAAGEILEQLYHANQV-------------------EKIRNVVFMGMGEPL 759

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDL 250
            N+D V+ ++S  +D    S    +I++ST G VP I ++ E++  V LA+SLHA + +L
Sbjct: 760 DNYDAVRFAVSAMTDVRRFSLGASKISVSTVGVVPRIHQMVEDMPDVGLALSLHAPNQEL 819

Query: 251 RNILVPINRKYPLEMLIDACRHYPG------LSNARRITFEYVMLKGINDSPRDALNLIK 304
           R  +VP  R + L+ +++A  H+              I  EYV++  +N +   A  L  
Sbjct: 820 REEIVPSGRSWHLDRIMEAIDHFQETRQETSRRRRTHILIEYVLIDEVNSTEEVAHQLGH 879

Query: 305 ILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           +LK     +N+IP+NP     +Y    +     F+E ++  G  + IR   G D+ AACG
Sbjct: 880 LLKDRDVLVNVIPYNPTDVPHDYKPPSRATTDRFNEIVRSYGLRTIIRQELGQDVNAACG 939

Query: 364 QLKSLSKR 371
           QL   S+R
Sbjct: 940 QLVVRSQR 947


>gi|320538490|ref|ZP_08038353.1| radical SAM enzyme, Cfr family [Treponema phagedenis F0421]
 gi|320144661|gb|EFW36414.1| radical SAM enzyme, Cfr family [Treponema phagedenis F0421]
          Length = 356

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 117/359 (32%), Positives = 174/359 (48%), Gaps = 33/359 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L G++ EE+              + +  QI++WI   G+  F  M+++S   R  L    
Sbjct: 18  LTGLLPEEIYRVC------ALPQKFQGEQIFRWI-ASGVESFAEMTNLSLSERERLANSA 70

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVY-IPEKSRGTLCVSSQVGCSLT 127
            I   ++       DGT K  +            +ETV  I    R T CVS QVGC ++
Sbjct: 71  VIRGSKLAVILKDPDGTIKLGIDLYD-----SQRVETVLLIDRAGRKTACVSCQVGCPMS 125

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           CSFC TG     RNLTA EI+ Q L    + G                  K+ NIV MGM
Sbjct: 126 CSFCQTGQLGFTRNLTAAEIVEQFLHLEKIAG------------------KLDNIVFMGM 167

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEP+ N   ++K++++ +   G + S RRITLSTSG    I  +G     + LA+SL   
Sbjct: 168 GEPMLNLPAIRKAIAVLTHKKGRALSPRRITLSTSGICKGIYELGSLGPDIRLAVSLTTA 227

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +  LR  L+PI ++  LE L  A   +   +   R+T E  +++GIN +P  A  +I+  
Sbjct: 228 NTALRTKLMPITKQNSLEDLKKAIAFFNEKTKK-RVTLELALMRGINTAPSFAREVIEFS 286

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           KG+   INLIP+NP    +Y    +K+++ F   ++++G    +R  RG  I  ACGQL
Sbjct: 287 KGLNVHINLIPWNPVESLDYASPTEKELIGFESLLRKAGIPVTLRHRRGKTICGACGQL 345


>gi|15639062|ref|NP_218508.1| hypothetical protein TP0068 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025302|ref|YP_001933074.1| hypothetical protein TPASS_0068 [Treponema pallidum subsp. pallidum
           SS14]
 gi|81556505|sp|O83107|RLMN_TREPA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829921|sp|B2S216|RLMN_TREPS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|3322324|gb|AAC65061.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017877|gb|ACD70495.1| hypothetical protein TPASS_0068 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059484|gb|ADD72219.1| radical SAM enzyme, Cfr family [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 340

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 113/359 (31%), Positives = 168/359 (46%), Gaps = 33/359 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L G++ EE+++            R R  Q+++WI   G  DF  MSD+S E R  L +  
Sbjct: 7   LSGLLPEEIQKVC------AFAERFRGVQVFRWI-AAGCTDFHAMSDLSSETRARLARAC 59

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGCSLT 127
            I    +       DGT K  +    +       +E V + ++ SR T C+S QVGC + 
Sbjct: 60  VISDTRVYTTLRDVDGTLKLGIELKDKR-----RVEAVLLVDQVSRKTACLSCQVGCPMA 114

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC TG     RNL+A EI+ Q L     +G                   + N+V MGM
Sbjct: 115 CAFCQTGQLGFARNLSASEIVEQFLHLERCVG------------------TLDNVVFMGM 156

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEP+ N D V +++ I S   G   S++RIT+STSG    I  + +  + V LA+SL   
Sbjct: 157 GEPMLNLDAVCRAIEILSHPQGRDLSEKRITISTSGHCRGIYSLADRALQVRLAVSLTTA 216

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +  LR  L+P      L  L  A R++   S   R+T E  +++G+N S R A  +I   
Sbjct: 217 NAPLRARLMPRAAHDSLAKLKSAIRYFNEKSGK-RVTLELALMRGVNTSERHAQEVIDFA 275

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            G+   +NLIP+NP     +    + ++  F   + R+      R  RG  I  ACGQL
Sbjct: 276 HGLNVHVNLIPWNPVASIHFETPREVEVAHFEALLMRARIPVTRRYQRGNGIGGACGQL 334


>gi|149197716|ref|ZP_01874766.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155]
 gi|149139286|gb|EDM27689.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155]
          Length = 343

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 118/327 (36%), Positives = 174/327 (53%), Gaps = 25/327 (7%)

Query: 49  DFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVY 107
           D     D  +    L+  HF I   +I+  + S  DG  K L++         + IETV 
Sbjct: 37  DLDSAFDNPK-FVELVRDHFEIPQLKIISRQDSKIDGASKLLVQTED-----GLNIETVI 90

Query: 108 IP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
           +     R +LC+SSQ GC+  C+FC T T    RNLT  EI+ QV+LA            
Sbjct: 91  LRIGTGRTSLCISSQAGCTEKCTFCSTATLGFKRNLTLAEIIGQVILA------------ 138

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
             G ++    RK+ NIV MGMGEPL N DNV KSL I   S  +  S +R+T+ST G   
Sbjct: 139 --GEILRKEDRKVRNIVFMGMGEPLRNTDNVLKSLEIMLSSAYMGLSSKRVTVSTIGITD 196

Query: 227 NIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
           NI ++      V LA+SLHA ++ +R+IL+PIN+ +P+E + +       L++   +  +
Sbjct: 197 NITKLRHSFPEVNLALSLHASNDQVRDILMPINKTFPMETIKETLLSAQELASGD-LMIQ 255

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRS 344
           Y+++K +NDSP  A  L   LKGI   INLIP+N   G   + CS ++ +  F + ++ S
Sbjct: 256 YLLIKDLNDSPEQAQELAAFLKGINCIINLIPYNDSMGMGNWKCSSEEKMSAFQDVLQES 315

Query: 345 GYSSPIRTPRGLDILAACGQLKSLSKR 371
            +    R   G DI AACGQL + +++
Sbjct: 316 DFQVTRRHSLGRDIDAACGQLAAKNQK 342


>gi|226498566|ref|NP_001144705.1| hypothetical protein LOC100277741 [Zea mays]
 gi|195646072|gb|ACG42504.1| hypothetical protein [Zea mays]
          Length = 381

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 111/367 (30%), Positives = 166/367 (45%), Gaps = 47/367 (12%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVR-GIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           +       GI    + +    IWK++       D  G+  +      LL Q F      +
Sbjct: 20  IRSEFSAAGISAHFIPL----IWKYVLQNPRCSDLDGVPSLPAAAYALLRQKFRPTTSTL 75

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVSSQ 121
                S D T   LL     C+     +E V +   +R               TLCVSSQ
Sbjct: 76  TAAADSKDRTTTKLL----ICLQNGESVEAVVMRYDTRLGKYDGKPRPGGVRSTLCVSSQ 131

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C FC TGT     NL++ EI+ Q++ A                       +I N
Sbjct: 132 VGCKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRYS-------------------QIRN 172

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLA 240
           +V MGMGEP+ N++ + +++ + +       S +RIT+ST G +  I +  G+   V LA
Sbjct: 173 VVFMGMGEPMNNYNALVEAIGVFT-GSPFQLSPKRITVSTVGIIHGINKFNGDLPKVNLA 231

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA   D+R  ++P  R +PL  L++A + Y   S  + I  EY+ML G+ND    A 
Sbjct: 232 VSLHAPDQDIRCQIMPAARAFPLGKLMNALQSYQNES-KQTIFIEYIMLDGVNDQEEHAH 290

Query: 301 NLIKILKGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDI 358
            L K+L+   A +NLIPFNP      +  S  +++  F + +K      + IR   G DI
Sbjct: 291 QLGKLLETFKAVVNLIPFNPIGSSSNFKTSSDQNVKNFQKVLKGIYRIRTTIRQQMGQDI 350

Query: 359 LAACGQL 365
             ACGQL
Sbjct: 351 AGACGQL 357


>gi|242036573|ref|XP_002465681.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor]
 gi|241919535|gb|EER92679.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor]
          Length = 381

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 106/347 (30%), Positives = 159/347 (45%), Gaps = 45/347 (12%)

Query: 38  IWKWIYVR-GIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD-GTRKWLLRFPAR 95
           IWK++       D  G+  +      LL Q F      +     S D  T K L+     
Sbjct: 37  IWKYVLQNPRCSDLDGVPSLPAAAYALLRQKFRPTTSTLTAAADSKDRTTTKLLISLQ-- 94

Query: 96  CIGGPVEIETVYIPEKSRG--------------TLCVSSQVGCSLTCSFCYTGTQKLVRN 141
                  +E V +   +R               TLCVSSQVGC + C FC TGT     N
Sbjct: 95  ---NGESVEAVVMRYDTRLGKYDGKPRPGGLRSTLCVSSQVGCKMGCRFCATGTMGFKSN 151

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L++ EI+ Q++ A                       +I N+V MGMGEP+ N++ + +++
Sbjct: 152 LSSGEIIEQLVHASRYS-------------------QIRNVVFMGMGEPMNNYNALVEAI 192

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRK 260
            + +       S +RIT+ST G +  I +   +   V LA+SLHA   D+R  ++P  R 
Sbjct: 193 GVFT-GSPFQLSPKRITVSTVGIIHGINKFNADLPKVNLAVSLHAPDQDIRCQIMPAARA 251

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           +PL  L++A + Y   S  + I  EY+ML G+ND    A  L K+L+   A +NLIPFNP
Sbjct: 252 FPLVKLMNALQSYQNES-KQTIFIEYIMLDGVNDQEEHAHQLGKLLETFKAVVNLIPFNP 310

Query: 321 WPG-CEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILAACGQL 365
                 +  S  +++  F + +K      + +R   G DI  ACGQL
Sbjct: 311 IGSLSNFKTSSDQNVKKFQKVLKGIYHIRTTVRQQMGQDIAGACGQL 357


>gi|302851668|ref|XP_002957357.1| hypothetical protein VOLCADRAFT_42666 [Volvox carteri f.
           nagariensis]
 gi|300257316|gb|EFJ41566.1| hypothetical protein VOLCADRAFT_42666 [Volvox carteri f.
           nagariensis]
          Length = 307

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 111/304 (36%), Positives = 164/304 (53%), Gaps = 20/304 (6%)

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------EKSRGTLCVSSQVGC 124
               +     + DGTRK +         G   +ETV IP       + R T+CVSSQVGC
Sbjct: 1   GGLRLSQVARAADGTRKLVFTLTEGEAAGG-SVETVLIPIVRQQGLRDRLTICVSSQVGC 59

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FCYTG   L+ NLT  +I+ QV+ AR              +       +++N+V 
Sbjct: 60  AMNCQFCYTGRMGLLGNLTTAQIVEQVVEARR------------FLAQEGERTQLTNLVF 107

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N + V  +  I S  +GL  S  ++T+ST G VP +  V     V +A+SLH
Sbjct: 108 MGMGEPLHNTEAVLAAADIVSHYLGLHISHNKVTISTVGLVPEMRSVVARSRVQMALSLH 167

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++++R+ +VP+NR+Y L  L  A     G S++R +  EY ML GIND+ +DA  L+ 
Sbjct: 168 ATTDEVRDWIVPVNRRYDLATLTAALEE-LGNSSSRSLLIEYTMLHGINDTLQDAHRLVA 226

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L  +  K+NLI FNP  G  +  S ++ +  F   + ++G    IR  RG D +AACGQ
Sbjct: 227 MLARVNCKVNLIMFNPHAGTRFQPSTEEAVTAFRSALVQAGMVCTIRDSRGDDEMAACGQ 286

Query: 365 LKSL 368
           L ++
Sbjct: 287 LGNV 290


>gi|297834876|ref|XP_002885320.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331160|gb|EFH61579.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 382

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 113/391 (28%), Positives = 181/391 (46%), Gaps = 40/391 (10%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           +K +S+      E++      GI           IWK++       +  +  +      L
Sbjct: 1   MKLKSVFDAS--EIKSEFESAGINPNF----AIPIWKYVIQNPDCVWDEIPSLPSAAYSL 54

Query: 64  LNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRG-------- 114
           L+  F  +   +     S DGT  K L++           +E V +   +R         
Sbjct: 55  LHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQ-----NGAFVEAVVMRYDTRLGMLGGKPR 109

Query: 115 ------TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
                 TLC+SSQVGC + C+FC TGT     NLT+ EI+ Q++ A  +        +I 
Sbjct: 110 PGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASRI----ADIRNIV 165

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
            M++P       +    GMGEPL N++ V +++ +         S +RIT+ST G V  I
Sbjct: 166 FMLLPW-----FDDCDQGMGEPLNNYNAVVEAVRVML-KQPFQLSPKRITISTVGIVHAI 219

Query: 229 ARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            ++  ++  V LA+SLHA   ++R  ++P  R +PL+ L+DA + +   S  ++I  EY+
Sbjct: 220 NKLDNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNS-QQKIFIEYI 278

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKR-SG 345
           ML G+ND  + A  L ++LK     INLIPFNP     ++  S  + + +F + ++    
Sbjct: 279 MLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQSVSSFQKILRETYK 338

Query: 346 YSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376
             + IR   G DI  ACGQL      I K P
Sbjct: 339 IRTTIRKEMGQDISGACGQLVVNQPDIKKTP 369


>gi|218192280|gb|EEC74707.1| hypothetical protein OsI_10424 [Oryza sativa Indica Group]
          Length = 388

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 165/368 (44%), Gaps = 49/368 (13%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVR-GIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           +       GI    + +    IWK++       D   +  +      LL Q F      +
Sbjct: 27  IRAEFAAAGISPHFIPL----IWKYVLQNPRCGDLDAVPSLPAAAYALLRQKFQPTTSTL 82

Query: 76  VDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVSS 120
                S D  T K L+R           +E V +   +R               TLCVSS
Sbjct: 83  TTAAESKDHTTTKLLIRL-----KNGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSS 137

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC TGT     NL++ EI+ Q++ A                       +I 
Sbjct: 138 QVGCKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRYS-------------------QIR 178

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VML 239
           N+V MGMGEPL N+  + +++ +         S +RIT+ST G + +I +   ++  + L
Sbjct: 179 NVVFMGMGEPLNNYTALVEAIQVLI-GSPFQLSPKRITVSTVGIIHSINKFNNDLPNINL 237

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA   D+R  ++P  R +PL  L++A + Y   S  + I  EY+ML G+ND  + A
Sbjct: 238 AVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNES-KQTIFIEYIMLDGVNDQEQHA 296

Query: 300 LNLIKILKGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLD 357
             L K+L+   A +NLIPFNP      +  S + ++  F + ++      + IR   G D
Sbjct: 297 HQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYNIRTTIRQQMGQD 356

Query: 358 ILAACGQL 365
           I  ACGQL
Sbjct: 357 IAGACGQL 364


>gi|115451403|ref|NP_001049302.1| Os03g0202300 [Oryza sativa Japonica Group]
 gi|108706720|gb|ABF94515.1| radical SAM enzyme, Cfr family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113547773|dbj|BAF11216.1| Os03g0202300 [Oryza sativa Japonica Group]
          Length = 388

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 165/368 (44%), Gaps = 49/368 (13%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVR-GIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           +       GI    + +    IWK++       D   +  +      LL Q F      +
Sbjct: 27  IRAEFAAAGISPHFIPL----IWKYVLQNPRCGDLDAVPSLPAAAYALLRQKFQPTTSTL 82

Query: 76  VDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVSS 120
                S D  T K L+R           +E V +   +R               TLCVSS
Sbjct: 83  TTAAESKDRTTTKLLIRL-----KNGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSS 137

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC TGT     NL++ EI+ Q++ A                       +I 
Sbjct: 138 QVGCKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRYS-------------------QIR 178

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VML 239
           N+V MGMGEPL N+  + +++ +         S +RIT+ST G + +I +   ++  + L
Sbjct: 179 NVVFMGMGEPLNNYTALVEAIQVLI-GSPFQLSPKRITVSTVGIIHSINKFNNDLPNINL 237

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA   D+R  ++P  R +PL  L++A + Y   S  + I  EY+ML G+ND  + A
Sbjct: 238 AVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNES-KQTIFIEYIMLDGVNDQEQHA 296

Query: 300 LNLIKILKGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLD 357
             L K+L+   A +NLIPFNP      +  S + ++  F + ++      + IR   G D
Sbjct: 297 HQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYNIRTTIRQQMGQD 356

Query: 358 ILAACGQL 365
           I  ACGQL
Sbjct: 357 IAGACGQL 364


>gi|308804299|ref|XP_003079462.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
           tauri]
 gi|116057917|emb|CAL54120.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
           tauri]
          Length = 385

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 122/403 (30%), Positives = 187/403 (46%), Gaps = 65/403 (16%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY-VRGIRDFQGMSDISQEVRH 62
           +  ++LI    + L   + +          R  Q+   +Y  R  R  + M  + +E+R 
Sbjct: 1   MSAKTLIASSLDVLRRVVSE---ECAAPAWRAKQLVDSLYGKRRARAIEDMELLPREMRR 57

Query: 63  LLNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----------- 110
            +    +S    ++V   +  DG  K  +R     +G    +E V IP+           
Sbjct: 58  AMEDAGWSTGRLDVVKGSLGRDGAGKISVR-----VGERELVEAVGIPDASCYARDGSGE 112

Query: 111 ------------------KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
                             K+R T CVSSQVGC++ CSFC TG Q   RNL+A EI+ QVL
Sbjct: 113 VLGRADVETMFRGVDGWDKNRLTACVSSQVGCAMKCSFCATGLQGFKRNLSASEIVSQVL 172

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
               L G                 +++S++V MGMGEP+ N   V  ++   ++   +  
Sbjct: 173 ELEELYG-----------------KRVSDVVFMGMGEPMLNMKAVVGAIRCLNED--IGI 213

Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+ST G   ++A++ +E +   LAISLHA   + R  +VP  + YP E L+D  +
Sbjct: 214 GGRHITVSTVGIPNSLAKLAKEKLQATLAISLHAPDQETRLRIVPSAKHYPYEDLLDDVK 273

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEYLC 328
            Y   +   R+TFEY +L G+NDSP  A  L +ILK   G  A +N+IP+N   G +++ 
Sbjct: 274 MYFRETGR-RVTFEYTLLAGVNDSPSQAQALSRILKRKFGAGAHLNVIPWNSIEGVDHVK 332

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
             +  +  F   +   G S  IR  RG D+ AACG L    +R
Sbjct: 333 PSRNAVHRFCGAL--GGISHTIRRTRGDDVSAACGMLTGDFER 373


>gi|303271119|ref|XP_003054921.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462895|gb|EEH60173.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 327

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 102/332 (30%), Positives = 160/332 (48%), Gaps = 24/332 (7%)

Query: 54  SDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPE-- 110
           +++ +     +N  F+++   + +   S DG T K ++            +E V +    
Sbjct: 1   TEVPKFAVEGVNDAFALMTTTVAECHTSKDGSTTKMVVELQD-----GHRVEAVVMRHAI 55

Query: 111 ----KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
               + R TLCVSSQVGC + C+FC TGT   + NLT  EIL Q++ A+ L       + 
Sbjct: 56  HEGGRERNTLCVSSQVGCKMGCTFCATGTLGELGNLTCGEILEQLVHAQRLFRGDGDGDG 115

Query: 167 IEGMVIPSVGRK--------ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
            +G    +  R         I+N+V MGMGEPL N+D V  +L   +D    + +  R+T
Sbjct: 116 GDGDGGGASRRVSGRRRGGGITNLVFMGMGEPLNNYDAVIAALGPITDPKLFALAPSRVT 175

Query: 219 LSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
           +ST G VP +  +  +  GV LA+SLHA +  LR  +VP  R Y L  L++A   Y    
Sbjct: 176 VSTVGVVPRMKTLTRDAPGVALALSLHAPNQALRESIVPTARAYKLPALMEAMDKYLASG 235

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVT 336
              +   EY +L+G+ND    A  L ++L+G    +N IP+NP      +    ++ +  
Sbjct: 236 PKVKTMVEYCVLRGVNDGVEHARELGELLRGRDVIVNFIPYNPTDVPMGHAPPTKEAVKA 295

Query: 337 FSECIK--RSGYSSPIRTPRGLDILAACGQLK 366
             + +     G  + +R   G DI  ACGQL 
Sbjct: 296 MVDVLTGPEFGQFTTVRHEMGQDIAGACGQLA 327


>gi|218660671|ref|ZP_03516601.1| hypothetical protein RetlI_14322 [Rhizobium etli IE4771]
          Length = 245

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 145/224 (64%), Positives = 184/224 (82%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K SLIG+ REE+  AL + G+ ++ ++MR +Q+W WIYVRG+ DF  M+++++++R +L
Sbjct: 22  EKPSLIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 81

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            QHF+I  PEIV+E++S DGTRKWLLRFPAR  G PVEIE VYIPE+ RGTLC+SSQVGC
Sbjct: 82  KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 141

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR  LGDFP  E  +G ++P+ GRK+SNIVM
Sbjct: 142 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 201

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
           MGMGEPL NFD VK++L IA+D  GLS SKRR+TLSTSG VP I
Sbjct: 202 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEI 245


>gi|308172367|ref|YP_003919072.1| florfenicol/chloramphenicol resistance like protein [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605231|emb|CBI41602.1| florfenicol/chloramphenicol resistance like protein [Bacillus
           amyloliquefaciens DSM 7]
 gi|328552188|gb|AEB22680.1| chloramphenicol/florfenicol resistance protein [Bacillus
           amyloliquefaciens TA208]
 gi|328910459|gb|AEB62055.1| florfenicol/chloramphenicol resistance like protein [Bacillus
           amyloliquefaciens LL3]
          Length = 348

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 109/366 (29%), Positives = 180/366 (49%), Gaps = 41/366 (11%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPE 74
           ++E L +   P      R  QI   I+   I  F  ++ + + +R +L + F  S++   
Sbjct: 10  IQEFLKQNEFPD----FRMKQITNAIFHGRINHFNEITVLPKSLRKMLVKEFGESVLNIA 65

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133
            + E+ S   T K L       I G  +IETV +  K+   + C+SSQ GC   C+FC T
Sbjct: 66  ALKEQHSEQVT-KVLFE-----ISGDEKIETVNMKYKAGWESFCISSQCGCHFGCTFCAT 119

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   L  NLT++EI  Q+L                       G  I +I  MGMGE L N
Sbjct: 120 GDIGLKHNLTSDEITDQILYF------------------HLKGHSIDSISFMGMGEALAN 161

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
              V  +L + ++    + S RR+++ST G +P I ++ +    V L  SLH+  N+ R+
Sbjct: 162 -RQVFDALHVLTNPELFALSPRRLSISTIGIIPGIKKMTQNYPQVNLTFSLHSPFNEQRS 220

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--- 309
            L+PIN +YPL  ++D    +  +++  ++   Y+ML G+NDS   A  ++K+L+G    
Sbjct: 221 KLMPINERYPLMEVMDTLDEHIRVTSR-KVYIAYIMLPGVNDSIDHANEVVKLLRGRYKR 279

Query: 310 --PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                +N+I +NP       +   ++  +V F + +K +G +  IR+  G+DI AACGQL
Sbjct: 280 GNLFHVNIIRYNPTVSSPMRFKEVNENQVVNFYKTLKSAGINVTIRSQFGIDIDAACGQL 339

Query: 366 KSLSKR 371
               ++
Sbjct: 340 YGNYQK 345


>gi|218682815|ref|ZP_03530416.1| radical SAM enzyme, Cfr family protein [Rhizobium etli CIAT 894]
          Length = 240

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 154/223 (69%), Positives = 181/223 (81%)

Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
           GDFP  E  +G ++P+ GRK+SNIVMMGMGEPL NFD VK++L IA+D  GLS S+RR+T
Sbjct: 7   GDFPDREAPQGTIMPAEGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVT 66

Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           LSTSG VP I R GEEIGVMLAISLHAV +DLR+ILVPIN+KYPL+ LI+AC+ YPGLSN
Sbjct: 67  LSTSGVVPEIFRTGEEIGVMLAISLHAVRDDLRDILVPINKKYPLKELIEACKAYPGLSN 126

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFS 338
           ARRITFEYVMLK +NDS  DA  LIK+LKG+PAKINLIPFNPWPG  Y CSD + I  F+
Sbjct: 127 ARRITFEYVMLKDVNDSLEDAKGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFA 186

Query: 339 ECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
           + I  +GY+SPIRTPRG DILAACGQLKS S+R+ K  R   +
Sbjct: 187 DFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTERLAFE 229


>gi|212634296|ref|YP_002310821.1| hypothetical protein swp_1448 [Shewanella piezotolerans WP3]
 gi|212555780|gb|ACJ28234.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 242

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 106/248 (42%), Positives = 146/248 (58%), Gaps = 16/248 (6%)

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           ++  EI+ Q+      +G           V  +  R I+N+VMMGMGEPL N  NV  ++
Sbjct: 1   MSVSEIVGQIWRVADFIG----------FVKDTGERPITNVVMMGMGEPLLNLKNVIPAM 50

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261
            I  D  G S SKRR+T+STSG VP +  +G+ + V LA+S+HA +++LR++LVP+N+KY
Sbjct: 51  DIMLDDFGFSLSKRRVTVSTSGVVPALDILGDALDVALAVSIHAPNDELRDVLVPVNKKY 110

Query: 262 PLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319
           PLE  +   R Y   SN    R+T EYVML  INDS   A  L K++K  P K+NLIPFN
Sbjct: 111 PLEDFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDTPCKVNLIPFN 170

Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKV 375
           P+PG  Y  S    I  FS+ +   G +  +R  RG DI AACGQL    +  +KR+ K 
Sbjct: 171 PYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRLAKK 230

Query: 376 PRQEMQIT 383
             Q+ QI+
Sbjct: 231 QMQQNQIS 238


>gi|183220754|ref|YP_001838750.1| ribosomal RNA large subunit methyltransferase N [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910855|ref|YP_001962410.1| ribosomal RNA large subunit methyltransferase N [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|205829783|sp|B0SGA8|RLMN_LEPBA RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|205829784|sp|B0SPQ8|RLMN_LEPBP RecName: Full=Ribosomal RNA large subunit methyltransferase N;
           AltName: Full=23S rRNA m2A2503 methyltransferase
 gi|167775531|gb|ABZ93832.1| Fe-S-cluster redox enzyme [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779176|gb|ABZ97474.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 353

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 123/375 (32%), Positives = 182/375 (48%), Gaps = 36/375 (9%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L G  ++ELEE  + +G+     + R +QI+  IY          + +S+EVR  L +H 
Sbjct: 8   LKGKTKKELEEICVSLGLE----KYRAAQIYTGIYKSRYTTIDQFTTLSKEVREKLKEHT 63

Query: 69  SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGCS 125
                EI  + +S  DGTRK+        +G   EIE V+IP     R T+C+SSQ+GC+
Sbjct: 64  QYPEIEIGRDLVSKEDGTRKFTF-----YVGENKEIEAVWIPSGDGGRKTICISSQIGCT 118

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L C FC TG  +   NL   +IL QVL    L+GD                 + +NIV M
Sbjct: 119 LNCKFCATGLLEYKGNLQTWQILDQVLQVERLVGD-----------------RATNIVFM 161

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           GMGEP+ N+ +V K+  I  D         RIT+ST+G    I R  E +     AISL+
Sbjct: 162 GMGEPMHNYFSVMKAAHILRDKDAFGLGALRITISTAGVTTGINRFIENKEPFNFAISLN 221

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
             + + R+ ++ +N K+PLE LID+ + +    +   ITFEYVM+  +N    +A  L K
Sbjct: 222 HPNPNARSSVMDVNDKHPLEKLIDSAKRFTKELDR-AITFEYVMIPDVNMGRDNAERLAK 280

Query: 305 ILKGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAA 361
           I + +   KIN+IP N      +      ++  F   + ++  ++PI  R   G DI  A
Sbjct: 281 IARSVNKCKINVIPLN-TDFTGWRRPTDDEVKDFVMHL-KAKTTAPILNRRSPGRDINGA 338

Query: 362 CGQLKSLSKRIPKVP 376
           CG L     R     
Sbjct: 339 CGMLALKGIRSETTK 353


>gi|255100607|ref|ZP_05329584.1| florfenicol/chloramphenicol resistance protein [Clostridium
           difficile QCD-63q42]
          Length = 416

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 179/377 (47%), Gaps = 40/377 (10%)

Query: 14  REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SII 71
            +++++ +  + +P+     R  Q+   ++++GI  F+ M  + + +R  L + F  +++
Sbjct: 4   YKKMKQLIADMRLPE----YRYKQLLDAVFLQGIMRFEDMKLLPKTLREKLVEQFGETVV 59

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGT-LCVSSQVGCSLTCSF 130
             + +  + S   T K L             +ETV +  K      C+SSQ GC   C F
Sbjct: 60  EIKAIHHEKSMQ-TDKVLFELSD-----GNRVETVGLFYKEGWNSFCISSQSGCGFGCKF 113

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TGT  L RNLT +EI  Q+L                       G  I++I  MGMGEP
Sbjct: 114 CATGTLGLRRNLTVDEITDQILYFMQQ------------------GCSINSISFMGMGEP 155

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
             N   V ++L   +       S+RRIT+ST G VP I ++  E   V LA SLHA ++ 
Sbjct: 156 FAN-PQVFEALHDLTAPELFGLSQRRITISTIGIVPGIQKLTREYPQVNLAYSLHAPTDR 214

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--- 306
           LR  L+PI + YPL  ++D    +   +N  ++   Y+MLK +NDS R A  L K+L   
Sbjct: 215 LRETLMPITKTYPLGQVLDTLDQHIRQTNR-KVFLAYIMLKDVNDSDRHAEQLTKLLFKH 273

Query: 307 -KGIP-AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
            K +P   ++LIP+N     E  + S    I  F   I  +G S  IRT  G DI AACG
Sbjct: 274 KKYLPLYHLDLIPYNQTTVTETMVPSSHTRIKAFCRIIHNAGISVNIRTQFGSDINAACG 333

Query: 364 QLKSLSKRIPKVPRQEM 380
           QL    +   K   + M
Sbjct: 334 QLAGAYRDDQKQGERTM 350


>gi|240147073|ref|ZP_04745674.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
 gi|257200758|gb|EEU99042.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
          Length = 265

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 155/289 (53%), Gaps = 29/289 (10%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           +K  +  M  EEL+  +  IG        R  Q+++W++ +    F  M+++S+ ++  L
Sbjct: 4   EKTDIKSMNLEELKSYMESIG----EKPFRAKQLYQWMHEKQAASFDEMTNLSKSLQEKL 59

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
            +    +  +    ++S  DGTRK+L       +     IE+V +  K   ++C+SSQVG
Sbjct: 60  KKECHFVSLKQEAVQVSKIDGTRKYLFALDDGNV-----IESVLMRYKHGNSVCISSQVG 114

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C FC +    LVR LT  E+L Q+       G+                 +++N+V
Sbjct: 115 CRMGCRFCASTLDGLVRGLTPSEMLDQIYRITRDTGE-----------------RVANVV 157

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           +MG GEP+ NFDN+ K + + +D  GL+ S+R +T+ST G VP +  + + ++ + LA+S
Sbjct: 158 VMGTGEPMDNFDNLLKFIELLTDENGLNISQRNVTVSTCGIVPKMRELADKKLQITLALS 217

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           LHA S + R  L+PI  KY +  +I+ACR+Y   +   R+TFEY ++ G
Sbjct: 218 LHASSQEKRLELMPIANKYEIHEVIEACRYYFEQTGR-RVTFEYSLVGG 265


>gi|312903419|ref|ZP_07762599.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
 gi|310633295|gb|EFQ16578.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
          Length = 349

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 111/367 (30%), Positives = 183/367 (49%), Gaps = 41/367 (11%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPE 74
           ++E L +   P      R  QI   I+   I +F  ++ + + +R +L + F  SI+   
Sbjct: 10  IQEFLKQNKFPN----YRMKQITNAIFPGRINNFNEITVLPKSLRDMLIEEFGESILNIV 65

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133
            +  + S   + K L       I G  +IETV +  K+   + C+SSQ GC+  C FC T
Sbjct: 66  PLKAQQSTQVS-KVLF-----GISGDEKIETVNMKYKAGWESFCISSQCGCNFGCKFCAT 119

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   L RNLT++EI  Q+L                       G  I +I  MGMGE L N
Sbjct: 120 GDIGLKRNLTSDEITDQILYF------------------HLQGHSIDSISFMGMGEALAN 161

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
              V  +L++ +D    + S RR+++ST G +PNI ++ +    V L  SLH+  N+ R+
Sbjct: 162 V-QVFDALNVLTDPALFALSPRRLSISTIGIIPNIKKLTQNYPQVNLTFSLHSPFNEQRS 220

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--- 309
            L+PIN +YPL  ++D    +  +++  ++   Y+ML G+NDS   A  ++ +L+G    
Sbjct: 221 ELMPINERYPLSDVMDTLDEHIRVTSR-KVYIAYIMLHGVNDSIEHAKEVVNLLRGRYRS 279

Query: 310 --PAKINLIPFNPWPGC--EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                +N+I +NP       +  +++K +V F + +K +G    IR+  G+DI AACGQL
Sbjct: 280 GNLYHVNIIRYNPTVSSRMRFEEANEKCLVNFYKELKSAGIKVTIRSQFGIDIDAACGQL 339

Query: 366 KSLSKRI 372
               ++ 
Sbjct: 340 YGNYQKT 346


>gi|194694544|gb|ACF81356.1| unknown [Zea mays]
          Length = 266

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 112/257 (43%), Positives = 157/257 (61%), Gaps = 14/257 (5%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P + R T+CVSSQVGC++ C FC+TG   L ++L+  EI+ Q + AR L  D  G     
Sbjct: 3   PVRGRTTICVSSQVGCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDELGS---- 58

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
                     I+N+V MGMGEP  N DNV K+ +I  D  GL FS R++T+STSG VP +
Sbjct: 59  ----------INNVVFMGMGEPFHNIDNVIKASAIMVDEQGLHFSPRKVTVSTSGLVPQL 108

Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
            R  +E    LA+SL+A ++++RN ++PINRKY L +L+   R    L   + + FEYVM
Sbjct: 109 KRFLQESNCSLAVSLNATTDEVRNWIMPINRKYNLNLLLGTLREELNLRQKQIVLFEYVM 168

Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348
           L G+NDS  DA  LI++++GIP KINLI FNP  G ++  +    I+ F   + + G + 
Sbjct: 169 LSGVNDSMDDAKRLIELVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLTV 228

Query: 349 PIRTPRGLDILAACGQL 365
            +R  RG D +AACGQL
Sbjct: 229 FVRLSRGDDQMAACGQL 245


>gi|226314089|ref|YP_002773985.1| chloramphenicol/florfenicol resistance protein [Brevibacillus
           brevis NBRC 100599]
 gi|226097039|dbj|BAH45481.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 343

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 110/352 (31%), Positives = 172/352 (48%), Gaps = 45/352 (12%)

Query: 29  RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-----FSIIYP-EIVDEKISC 82
           +    R +QI   I+ + I +++ M+ + + +R  LN+       SI    E+  +++S 
Sbjct: 18  KQPEYRYAQIMDAIFKQNIGEYERMTILPKFLRDELNRILGPNVCSIAPVKELTSKQVS- 76

Query: 83  DGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYTGTQKLVRN 141
               K L       I G  ++E V +  +    + C+S+Q GC   C FC TGT  L RN
Sbjct: 77  ----KVLF-----AIPGDEQVEAVRLTYERGWKSYCISTQCGCGFRCKFCATGTIGLKRN 127

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           LTA+EI  Q+L  R                    G  + +I  MGMGE L N  ++ +++
Sbjct: 128 LTADEITDQLLYFR------------------LNGHSLDSISFMGMGEALAN-PHIFEAM 168

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRK 260
           +I +D        RRIT+ST G +P I ++  E   V L  SLH+  +D R+ L+PIN +
Sbjct: 169 TILTDPYLFGLGHRRITISTIGLLPGIDKLTREFPQVNLTFSLHSPFDDQRSELMPINDR 228

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINL 315
           +P+  ++ A   +   +   ++   Y++L+G+NDS   A  + ++L+G  A      +NL
Sbjct: 229 FPVRDVLIALDRHIRETGR-KVYIAYILLRGVNDSTAHAEAVAELLRGRGAWEHLYHVNL 287

Query: 316 IPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           IPFN        Y  SD   I  F   +K  G S  +RT  G DI AACGQL
Sbjct: 288 IPFNSTEVTPDSYRQSDPSRIKAFVRILKSRGISVTVRTQFGSDINAACGQL 339


>gi|34328031|ref|NP_899167.1| florfenicol/chloramphenicol resistance protein [Staphylococcus
           sciuri]
 gi|312620947|ref|YP_003927883.1| rRNA methylase [Bacillus sp. BS-02]
 gi|75466541|sp|Q9FBG4|CFR_STASC RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|205829896|sp|A5HBL2|CFR_STAAU RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|205829901|sp|A2AXI2|CFR_STAWA RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|9909980|emb|CAC04525.1| florfenicol resistance protein [Staphylococcus sciuri]
 gi|33352201|emb|CAE18142.1| florfenicol/chloramphenicol resistance protein [Staphylococcus
           sciuri]
 gi|124001381|emb|CAL64019.1| rRNA methylase [Staphylococcus warneri]
 gi|145974708|gb|ABQ00063.1| Cfr [Staphylococcus aureus]
 gi|185178617|gb|ACC77590.1| 23S rRNA methylase [Staphylococcus aureus]
 gi|307543255|gb|ADN44269.1| rRNA methylase [Bacillus sp. BS-02]
 gi|308275351|emb|CBN88266.1| rRNA methylase [Staphylococcus aureus]
 gi|310772090|emb|CBW44219.1| rRNA methylase [Staphylococcus aureus]
          Length = 349

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 184/376 (48%), Gaps = 46/376 (12%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MNF  K         +++E L     P      R  QI   I+ + I  F+ M  + + +
Sbjct: 1   MNFNNKT-----KYGKIQEFLRSNNEPD----YRIKQITNAIFKQRISRFEDMKVLPKLL 51

Query: 61  RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117
           R  L  +F  +++  +++ E+ S   T K L       +     +ETV +  K+   + C
Sbjct: 52  REDLINNFGETVLNIKLLAEQNSEQVT-KVLFE-----VSKNERVETVNMKYKAGWESFC 105

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +SSQ GC+  C FC TG   L +NLT +EI  QVL                      +G 
Sbjct: 106 ISSQCGCNFGCKFCATGDIGLKKNLTVDEITDQVLYF------------------HLLGH 147

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
           +I +I  MGMGE L N   V  +L   +D    + S RR+++ST G +P+I ++ +E   
Sbjct: 148 QIDSISFMGMGEALAN-RQVFDALDSFTDPNLFALSPRRLSISTIGIIPSIKKITQEYPQ 206

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V L  SLH+  ++ R+ L+PIN +YP++ +++    +  L++  ++   Y+ML G+NDS 
Sbjct: 207 VNLTFSLHSPYSEERSKLMPINDRYPIDEVMNILDEHIRLTSR-KVYIAYIMLPGVNDSL 265

Query: 297 RDALNLIKILK-----GIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349
             A  ++ +LK     G    +NLI +NP       Y  +++  +  F + +K +G    
Sbjct: 266 EHANEVVSLLKSRYKSGKLYHVNLIRYNPTISAPEMYGEANEGQVEAFYKVLKSAGIHVT 325

Query: 350 IRTPRGLDILAACGQL 365
           IR+  G+DI AACGQL
Sbjct: 326 IRSQFGIDIDAACGQL 341


>gi|71608924|emb|CAI56203.1| methyltransferase [Staphylococcus aureus]
 gi|76057931|emb|CAJ30491.1| 23S rRNA methylase [Staphylococcus aureus]
          Length = 349

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 185/376 (49%), Gaps = 46/376 (12%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MNF  K         +++E L     P      R  QI   I+ + I  F+ M  + + +
Sbjct: 1   MNFNNKT-----KYGKIQEFLRSNNEPD----YRIKQITNAIFKQRISRFEDMKVLPKLL 51

Query: 61  RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117
           R  L  +F  +++  +++ E+ S   T K L       +     +ETV +  K+   + C
Sbjct: 52  REDLINNFGETVLNIKLLAEQNSEQVT-KVLFE-----VSKNERVETVNMKYKAGWESFC 105

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +SSQ GC+  C FC TG   L +NLT +EI  QVL                      +G 
Sbjct: 106 ISSQCGCNFGCKFCATGDIGLKKNLTVDEITDQVLYF------------------HLLGH 147

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
           +I +I  MGMGE L N   V  +L   +D    + S RR+++ST G +P+I ++ +E   
Sbjct: 148 QIDSISFMGMGEALAN-RQVFDALDSFTDPNLFALSPRRLSISTIGIIPSIKKITQEYPQ 206

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V L  SLH+  ++ R+ L+PIN +YP++ +++    +  L++  ++  +Y+ML G+NDS 
Sbjct: 207 VNLTFSLHSPYSEERSKLMPINDRYPIDEVMNILDEHIRLTSR-KVYIDYIMLPGVNDSL 265

Query: 297 RDALNLIKILK-----GIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349
             A  ++ +LK     G    +NLI +NP       Y  +++  +  F + +K +G    
Sbjct: 266 EHANEVVSLLKSRYKSGKLYHVNLIRYNPTISAPEMYGEANEGQVEAFYKVLKSAGIHVT 325

Query: 350 IRTPRGLDILAACGQL 365
           IR+  G+DI AACGQL
Sbjct: 326 IRSQFGIDIDAACGQL 341


>gi|292493934|ref|YP_003533077.1| rRNA methylase [Bacillus sp. BS-01]
 gi|291276223|gb|ADD91311.1| rRNA methylase [Bacillus sp. BS-01]
          Length = 349

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 184/376 (48%), Gaps = 46/376 (12%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MNF  K         +++E L     P      R  QI   I+ + I  F+ M  + + +
Sbjct: 1   MNFNNKT-----KYGKIQEFLRSNNEPD----YRIKQITNAIFKQRISRFEDMKVLPKLL 51

Query: 61  RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117
           R  L  +F  +++  +++ E+ S   T K L       +     +ETV +  K+   + C
Sbjct: 52  REDLINNFGETVLNIKLLAEQNSEQVT-KVLFE-----VSKNERVETVNMKYKAGWESFC 105

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +SSQ GC+  C FC TG   L +NLT +EI  QVL                      +G 
Sbjct: 106 ISSQCGCNFGCKFCATGDIGLKKNLTVDEITDQVLYF------------------HLLGH 147

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
           +I +I  MGMGE L N   V  +L   +D    + S RR+++ST G +P+I ++ +E   
Sbjct: 148 QIDSISFMGMGEALAN-RQVFDALDSFTDPNLFALSPRRLSISTIGIIPSIKKITQEYPQ 206

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V L  SLH+  ++ R+ L+PIN +YP++ +++    +  L++  ++   Y+ML G+NDS 
Sbjct: 207 VNLTFSLHSPYSEERSKLMPINDRYPIDEVMNILDEHIRLTSR-KVYIAYIMLPGVNDSL 265

Query: 297 RDALNLIKILK-----GIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349
             A  ++ +LK     G    +NLI +NP       Y  +++  +  F + +K +G    
Sbjct: 266 EHANEVVSLLKSRYKSGKLYHVNLIRYNPTISAPEMYGEANEGHVEAFYKVLKSAGIHVT 325

Query: 350 IRTPRGLDILAACGQL 365
           IR+  G+DI AACGQL
Sbjct: 326 IRSQFGIDIDAACGQL 341


>gi|187776707|ref|ZP_02993180.1| hypothetical protein CLOSPO_00222 [Clostridium sporogenes ATCC
           15579]
 gi|187775366|gb|EDU39168.1| hypothetical protein CLOSPO_00222 [Clostridium sporogenes ATCC
           15579]
          Length = 344

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 104/342 (30%), Positives = 162/342 (47%), Gaps = 35/342 (10%)

Query: 33  MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VDEKISCDGTRKWLL 90
            R  Q+ K I+ + I +F+ M  + + +R  L   F      +  V  + S    +K L 
Sbjct: 23  YRYEQLTKAIFHQRIDNFEDMHILPKALRMALVNEFGKNVSSVIPVFSQDSKQA-QKLLF 81

Query: 91  RFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
                       +E V +  K    + C+SSQ GC   C FC TG+    RNLTA+EI  
Sbjct: 82  ELTD-----GERVEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSAGFKRNLTADEITD 136

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           Q+L                         ++++I  MGMGE   N + +  ++ I +D   
Sbjct: 137 QLLYF------------------YFNDHRLNSISFMGMGEAFANPE-LFDAVKILTDENL 177

Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
              S+RRIT+ST G +P I R+ +E   V LA SLH+     R+ L+PIN+++PL  ++ 
Sbjct: 178 FGLSQRRITISTIGIIPRIQRLTKEFPQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMK 237

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPWPG 323
               +  +   RR+   Y+ML+GINDS   A  ++ +LK   +      I+LIP+N    
Sbjct: 238 TLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDK 296

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             +       I  F   +K++G S+ +RT  G +I AACGQL
Sbjct: 297 TTFKFQSSSAIKQFCNTLKKAGISATVRTQFGSEISAACGQL 338


>gi|307352151|ref|YP_003896025.1| chloramphenicol-florfenicol resistance protein, CFR [Enterococcus
           faecalis]
 gi|307155389|gb|ADN34770.1| chloramphenicol-florfenicol resistance protein, CFR [Enterococcus
           faecalis]
          Length = 349

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 184/376 (48%), Gaps = 46/376 (12%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           MNF  K         +++E L     P      R  QI   I+ + I  F+ M  + + +
Sbjct: 1   MNFNNKT-----KYGKIQEFLRSNNEPD----YRIKQITNAIFKQRISRFEDMKVLPKLL 51

Query: 61  RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117
           R  L  +F  +++  +++ E+ S   T K L       +     +ETV +  K+   + C
Sbjct: 52  REDLINNFGETVLNIKLLAEQNSEQVT-KVLFE-----VSKNKRVETVNMKYKAGWESFC 105

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +SSQ GC+  C FC TG   L +NLT +EI  QVL                      +G 
Sbjct: 106 ISSQCGCNFGCKFCATGNIGLKKNLTVDEITDQVLYF------------------HLLGH 147

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
           +I +I  MGMGE L N   V  +L   +D    + S RR+++ST G +P+I ++ +E   
Sbjct: 148 QIDSISFMGMGEALAN-RQVFDALDSFTDPNLFALSPRRLSISTIGIIPSIKKITQEYPQ 206

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V L  SLH+  ++ R+ L+PIN +YP++ +++    +  L++  ++   Y+ML G+NDS 
Sbjct: 207 VNLTFSLHSPYSEERSKLMPINDRYPIDEVMNILDEHIRLTSR-KVYIAYIMLPGVNDSL 265

Query: 297 RDALNLIKILK-----GIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349
             A  ++ +LK     G    +NLI +NP       Y  +++  +  F + +K +G    
Sbjct: 266 EHANEVVSLLKSRYKSGKLYHVNLIRYNPTISAPEMYGEANEGQVEAFYKVLKSAGIHVT 325

Query: 350 IRTPRGLDILAACGQL 365
           IR+  G+DI AACGQL
Sbjct: 326 IRSQFGIDIDAACGQL 341


>gi|297621026|ref|YP_003709163.1| putative Fe-S-cluster redox enzyme, Cfr family [Waddlia
           chondrophila WSU 86-1044]
 gi|297376327|gb|ADI38157.1| putative Fe-S-cluster redox enzyme, Cfr family [Waddlia
           chondrophila WSU 86-1044]
          Length = 359

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 185/367 (50%), Gaps = 30/367 (8%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWK-WIYVRGIRDFQGMSDISQEVRHLLN 65
             ++   RE   +A+ K            + +++ W+    +         +  +   + 
Sbjct: 2   IPILSHTRESYSQAVAKALGKGLQ---HAALLYREWMRTGNVSSKHPAFYNAPLLYEEIL 58

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           Q      PEI  +    D  RK L+RF    +     +E+V IP +   +LCVSSQ GC 
Sbjct: 59  QVTDFSLPEISHQLTDGD-VRKLLIRFDDGNV-----VESVVIPMQFGLSLCVSSQAGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TG   L R+L +EEI+ Q  +AR +L                    I NIV M
Sbjct: 113 MGCTFCQTGRIGLKRHLRSEEIVAQGFIARHVLR-----------------LPIRNIVFM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VMLAISL 243
           GMGEP+ NFD V +++ + SD  G++F  R +T+ST G V  I R   E+   V LA+S+
Sbjct: 156 GMGEPMDNFDAVSQAIKVFSDQGGMAFGMRHLTVSTVGRVDGIRRFVSEVNPAVNLAVSI 215

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           +A ++ LR  L+P+ RKY L  + +A   Y      R +   YV++KG+NDS   A  L 
Sbjct: 216 NAPNDALRKTLMPLTRKYSLGTIKEALLDYCS-HPRRSVLIGYVLIKGVNDSLELADELA 274

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
             +KG+ AK+NLIP+NP     Y   + + +  F+  ++  G S+ +R  +G +++AACG
Sbjct: 275 AYIKGLRAKVNLIPYNPQESDPYETPESESVNAFAARLRAQGVSTLLRQTKGDEMMAACG 334

Query: 364 QLKSLSK 370
           QL  ++K
Sbjct: 335 QLGGVNK 341


>gi|226950274|ref|YP_002805365.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|226842506|gb|ACO85172.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 344

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 104/358 (29%), Positives = 167/358 (46%), Gaps = 39/358 (10%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI- 75
           +++ +  + +P      R  Q+ K I+ + I +F  M  + + +R  L   F      + 
Sbjct: 11  MKQIVSNLKLPD----YRYEQLIKAIFHQRIDNFDDMHILPKALRMSLVNEFRKNVSSVI 66

Query: 76  -VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133
            V  + S    +K L             IE V +  K    + C+S Q GC   C FC T
Sbjct: 67  PVFSQDSKQA-QKLLFELTD-----GERIEAVGLKYKQGWESFCISCQCGCGFGCRFCAT 120

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G+    RNLTA+EI  Q+L                         ++++I  MGMGE   N
Sbjct: 121 GSVGFKRNLTADEITDQLLYF------------------YFNDHRLNSISFMGMGEAFAN 162

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            + +  ++ I +D      S+RRIT+ST G +P I R+ ++   V LA SLH+     R+
Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTQKFPQVNLAFSLHSPFESQRS 221

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311
            L+PIN+++PL  ++     +  +   RR+   Y+ML+GINDS   A  ++ +LK   + 
Sbjct: 222 DLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSW 280

Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                I+LIP+N      +       I  F   +K++G S+ +RT  G +I AACGQL
Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338


>gi|168184510|ref|ZP_02619174.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum Bf]
 gi|237796302|ref|YP_002863854.1| chloramphenicol/florfenicol resistance protein [Clostridium
           botulinum Ba4 str. 657]
 gi|182672475|gb|EDT84436.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum Bf]
 gi|229261117|gb|ACQ52150.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum Ba4 str. 657]
          Length = 344

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 105/358 (29%), Positives = 169/358 (47%), Gaps = 39/358 (10%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI- 75
           +++ +  + +P      R  Q+ K I+ + I +F  M  + + +R  L   F      + 
Sbjct: 11  MKQIVSNLKLPD----YRYKQLIKAIFHQRIDNFDDMHILPKALRMSLVNEFGKNVSSVI 66

Query: 76  -VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133
            V  + S    +K L+            IE V +  K    + C+S Q GCS  C FC T
Sbjct: 67  PVFSQDSKQA-QKLLIELTD-----GERIEAVGLKYKQGWESFCISCQCGCSFGCRFCAT 120

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G+    RNLTA+EI  Q+L                         ++++I  MGMGE   N
Sbjct: 121 GSVGFKRNLTADEITDQLLYF------------------YFNDHRLNSISFMGMGEAFAN 162

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            + +  ++ I +D      S+RRIT+ST G +P I R+ ++   V LA SLH+     R+
Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTQKFPQVNLAFSLHSPFESQRS 221

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311
            L+PIN+++PL  ++     +  +   RR+   Y+ML+GINDS   A  ++ +LK   + 
Sbjct: 222 DLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSW 280

Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                I+LIP+N      +       I  F   +K++G S+ +RT  G +I AACGQL
Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338


>gi|299535922|ref|ZP_07049242.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
           fusiformis ZC1]
 gi|298728674|gb|EFI69229.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
           fusiformis ZC1]
          Length = 286

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 91/272 (33%), Positives = 149/272 (54%), Gaps = 24/272 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           KES+  +   +LEE L + G        R +QI+ W+Y + ++ F+ MS++S+ +R  L 
Sbjct: 34  KESIYSLQPHQLEEWLTENG----EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGLREKLT 89

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            +F++     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC 
Sbjct: 90  ANFALSTLSTIIKQESKDGTIKFLFQLQD-----GYSIETVLMRHEYGNSVCVTTQVGCR 144

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +    L R+L A EI+ QV+  +  L +               G ++S+IV+M
Sbjct: 145 IGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTLDEL--------------GERVSHIVIM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           G+GEP  N+D +   L + +   GL+   R IT+STSG VP I +  +E + +  A+SLH
Sbjct: 191 GIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFADEQLQINFAVSLH 250

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           A + + R  L+PI R Y LE L+DA R+Y   
Sbjct: 251 APNQEARQKLMPIARAYKLEELMDAVRYYTKK 282


>gi|46445973|ref|YP_007338.1| hypothetical protein pc0339 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81627607|sp|Q6MED6|RLMN1_PARUW RecName: Full=Ribosomal RNA large subunit methyltransferase N 1;
           AltName: Full=23S rRNA m2A2503 methyltransferase 1
 gi|46399614|emb|CAF23063.1| hypothetical protein pc0339 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 358

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 115/345 (33%), Positives = 184/345 (53%), Gaps = 29/345 (8%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII-YPEIVDEKISCDG-TRKWLLR 91
               +++  + RG  +  G++   +  + LL    S+  +  +   +   DG T K+L++
Sbjct: 30  HAKLVYQEWFRRG--NISGLNPAFKNAQALLQNILSLTDFSFLPISQNLTDGQTGKFLIK 87

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                     +I++V IP ++ GTLC+SSQ+GC + C+FC TG   L+RNLT +EIL Q+
Sbjct: 88  TIDDL-----DIKSVLIPMQAGGTLCISSQIGCQMGCAFCETGRMGLLRNLTTQEILSQL 142

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            +A+                   +   + NIV MGMGEP  N+D V  +  I +DS G  
Sbjct: 143 FIAK-----------------FRLHFSVRNIVFMGMGEPFDNYDTVMHAFRILTDSHGFG 185

Query: 212 FSKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
               RIT+STSG +  I R+ +E      LA+SL+A +++LRN L+PIN+KYPL+ L  A
Sbjct: 186 LGNNRITISTSGCLEGIYRLLQETTPLPNLAVSLNAPNDELRNKLMPINKKYPLKELYQA 245

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329
              +   ++ + +   YV++K  NDS   A  L   L G+  KINLIP+NP     +   
Sbjct: 246 IYDFCKQTSKQ-VLIAYVLIKEQNDSIEHAKQLTNFLSGLNVKINLIPYNPQSRDRFQSP 304

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374
           +Q  +  F+  ++  G+ + +R  +G  I+AACGQL +L  +  K
Sbjct: 305 EQSTLENFTSYLREKGFYTLLRQTKGQKIMAACGQLGNLELKRKK 349


>gi|168179276|ref|ZP_02613940.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum NCTC 2916]
 gi|182669853|gb|EDT81829.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum NCTC 2916]
          Length = 344

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 104/358 (29%), Positives = 167/358 (46%), Gaps = 39/358 (10%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI- 75
           +++ +  + +P      R  Q+ K I+ + I +F  M  + + +R  L   F      + 
Sbjct: 11  MKQIVSNLKLPD----YRYEQLIKAIFHQRIDNFDDMHILPKALRMSLVNEFGKNVSSVI 66

Query: 76  -VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133
            V  + S    +K L             IE V +  K    + C+S Q GC   C FC T
Sbjct: 67  PVFSQDSKQA-QKLLFELTD-----GERIEAVGLKYKQGWESFCISCQCGCGFGCRFCAT 120

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G+    RNLTA+EI  Q+L                         ++++I  MGMGE   N
Sbjct: 121 GSVGFKRNLTADEITDQLLYF------------------YFNDHRLNSISFMGMGEAFAN 162

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            + +  ++ I +D      S+RRIT+ST G +P I R+ ++   V LA SLH+     R+
Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTQKFPQVNLAFSLHSPFESQRS 221

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311
            L+PIN+++PL  ++     +  +   RR+   Y+ML+GINDS   A  ++ +LK   + 
Sbjct: 222 DLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSW 280

Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                I+LIP+N      +       I  F   +K++G S+ +RT  G +I AACGQL
Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338


>gi|170758262|ref|YP_001788180.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|205829643|sp|B1KZ37|CFR_CLOBM RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|169405251|gb|ACA53662.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 344

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 105/358 (29%), Positives = 168/358 (46%), Gaps = 39/358 (10%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI- 75
           +++ +  + +P      R  Q+ K I+ + I +F  +  + + +R  L   F      + 
Sbjct: 11  MKQMVSNLKLPD----YRYEQLTKAIFHQRIDNFDDIHILPKALRMSLVNEFGKNVSSVI 66

Query: 76  -VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133
            V  + S    RK L             IE V +  K    + C+SSQ GC   C FC T
Sbjct: 67  PVFSQDSKQA-RKLLFELTD-----GERIEAVGLKYKQGWESFCISSQCGCGFGCRFCAT 120

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G+    RNLTA+EI  Q+L                         ++++I  MGMGE   N
Sbjct: 121 GSAGFKRNLTADEITDQLLYF------------------YFNNHRLNSISFMGMGEAFAN 162

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            + +  ++ I +D      S+RRIT+ST G +P I R+ ++   V LA SLH+     R+
Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTKKFPQVNLAFSLHSPFESQRS 221

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311
            L+PIN+++PL  ++     +  +   RR+   Y+ML+GINDS   A  ++ +LK   + 
Sbjct: 222 DLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSW 280

Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                I+LIP+N      +       I  F   +K++G S+ +RT  G +I AACGQL
Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338


>gi|329930082|ref|ZP_08283701.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
 gi|328935341|gb|EGG31816.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
          Length = 346

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 177/376 (47%), Gaps = 48/376 (12%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M  L K        E++ + L  +  P      R SQI + I+   I +F+ M+++ + +
Sbjct: 1   MKHLSK-------YEKIRKILSALNQPN----YRYSQITESIFKNKIGNFEAMNNLPKPL 49

Query: 61  RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117
           R+ L +    +++      E+ S   + K L   P     G   IE+V +  ++   + C
Sbjct: 50  RNELIKELGNNVLSITPKMEQKSNQVS-KILFAVP-----GDEYIESVRLSYQTGWESYC 103

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +SSQ GC   C+FC TGT  L RNLT +EI  Q+L                         
Sbjct: 104 ISSQCGCGFGCTFCATGTLGLKRNLTTDEITDQLLYF------------------TLNNH 145

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
            + ++  MGMGE L N   V  +L + +D        RRIT+ST G +P + ++ +E   
Sbjct: 146 PLDSVSFMGMGEALAN-PYVFDALHVLTDPKLFGLGHRRITVSTIGLIPGVKKLTKEFPQ 204

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + L  SLH+  +D R+ L+PIN  +PLE ++     +   +   ++   Y++L+GINDS 
Sbjct: 205 INLTFSLHSPFHDQRSELMPINNHFPLEEVMTVLDEHIQQTKR-KVYIAYILLRGINDST 263

Query: 297 RDALNLIKILKGI-----PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349
           + A  +  +L+G         +NLIP+N        ++ SDQ  I  F   +K  G    
Sbjct: 264 KHAEAVADLLRGRGPWEHLYHVNLIPYNSTDATSQSFVESDQNSINMFLRILKSKGIHVT 323

Query: 350 IRTPRGLDILAACGQL 365
           +RT  G DI AACGQL
Sbjct: 324 VRTQFGSDINAACGQL 339


>gi|328773686|gb|EGF83723.1| hypothetical protein BATDEDRAFT_3639 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 368

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 108/376 (28%), Positives = 180/376 (47%), Gaps = 55/376 (14%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           L+EA     I  +H      ++W++   R  + F  + ++ ++   +L   F+ +  +++
Sbjct: 9   LKEAFNLHNISPKH----AQKLWRYFIQRNAKSFTDVPELPKQALQILESDFTPMTSKVI 64

Query: 77  DEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKS---------------RGTLCVSS 120
               + DG T K L+            IE+V +  +                R TLCVSS
Sbjct: 65  SRTDNADGSTTKLLVELQD-----GQRIESVIMRYEKMTKDMDGNIKYRSNKRATLCVSS 119

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C+FC TGT  L+ NL+A EIL Q++ A  +                     I 
Sbjct: 120 QVGCAMGCTFCATGTMGLLANLSAGEILEQLVHANQV-------------------EHIR 160

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
           N+V MGMGEPL N+  V  +++   D+     S  RI++ST G VP +  +  +   + L
Sbjct: 161 NVVFMGMGEPLDNYPAVLMAVNGMIDTSRFGLSPSRISVSTVGVVPRMRSLVRDMPDIGL 220

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--------ARRITFEYVMLKG 291
           A+SLHA + +LR  +VP  + + +E +++A   +    N         + +  EYV++  
Sbjct: 221 ALSLHAPTQELRTQIVPTAKAWNIERIMEAADVFIAQQNANVKSHNRRKHVLIEYVLIAD 280

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKR-SGYSSP 349
           INDS   A  L K+L+G    +N+IP+NP     +Y    Q+ +  F + ++R     + 
Sbjct: 281 INDSEVVAHQLGKLLEGRDVLLNVIPYNPTSVPYDYKPPLQETMKVFVDIVRRVYNVHTL 340

Query: 350 IRTPRGLDILAACGQL 365
           +R   G DI +ACGQL
Sbjct: 341 LRQELGQDISSACGQL 356


>gi|322807173|emb|CBZ04747.1| putative florfenicol resistance protein [Clostridium botulinum
           H04402 065]
          Length = 344

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 106/358 (29%), Positives = 168/358 (46%), Gaps = 39/358 (10%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPE 74
           +++    + +P      R  Q+ K I+ + I +F  M  + + +R  L   F  ++    
Sbjct: 11  MKQIASNLKLPD----YRYEQLTKAIFHQRINNFDDMHILPKTLRIALVNEFGKNVSSVT 66

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133
            +  + S    +K L             IE V +  K    + C+SSQ GC   C FC T
Sbjct: 67  PIFSQDSKQA-QKLLFELTD-----GERIEAVGLKYKQGWESFCISSQCGCGFGCRFCAT 120

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G+    RNLTA+EI  Q+L                         ++++I  MGMGE   N
Sbjct: 121 GSAGFKRNLTADEITDQLLYF------------------YFNNHRLNSISFMGMGEAFAN 162

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRN 252
            + +  ++ I +D      S+RRIT+ST G +P I R+ +E   V LA SLH+     R+
Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTKEFSQVNLAFSLHSPFESQRS 221

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311
            L+PIN+++PL  ++     +  +   RR+   Y+ML+GINDS   A  +I +LK   + 
Sbjct: 222 DLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVIGLLKNRGSW 280

Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                I+LIP+N      +       I  F   +K++G S+ +RT  G +I AACGQL
Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338


>gi|170754770|ref|YP_001782469.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum B1 str. Okra]
 gi|205829627|sp|B1IL14|CFR_CLOBK RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|169119982|gb|ACA43818.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum B1 str. Okra]
          Length = 344

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 104/358 (29%), Positives = 168/358 (46%), Gaps = 39/358 (10%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI- 75
           +++ +  + +P      R  Q+ K I+ + I +F  +  + + +R  L   F      + 
Sbjct: 11  MKQMVSNLKLPD----YRYEQLTKAIFHQRIDNFDDIHILPKALRMSLVNEFGKNVSSVI 66

Query: 76  -VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133
            V  + S    +K L             IE V +  K    + C+SSQ GC   C FC T
Sbjct: 67  PVFSQDSKQA-QKLLFELTD-----GERIEAVGLKYKQGWESFCISSQCGCGFGCRFCAT 120

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G+    RNLTA+EI  Q+L                         ++++I  MGMGE   N
Sbjct: 121 GSAGFKRNLTADEITDQLLYF------------------YFNNHRLNSISFMGMGEAFAN 162

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            + +  ++ I +D      S+RRIT+ST G +P I R+ ++   V LA SLH+     R+
Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTKKFPQVNLAFSLHSPFESRRS 221

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311
            L+PIN+++PL  ++     +  +   RR+   Y+ML+GINDS   A  ++ +LK   + 
Sbjct: 222 DLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSW 280

Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                I+LIP+N      +       I  F   +K++G S+ +RT  G +I AACGQL
Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338


>gi|160880358|ref|YP_001559326.1| radical SAM protein [Clostridium phytofermentans ISDg]
 gi|205829630|sp|A9KK15|CFR_CLOPH RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|160429024|gb|ABX42587.1| radical SAM enzyme, Cfr family [Clostridium phytofermentans ISDg]
          Length = 344

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 116/365 (31%), Positives = 177/365 (48%), Gaps = 45/365 (12%)

Query: 14  REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SII 71
            E +++ +  + +P      R  QI K I+ +    F+ MS +  E++  L   F  S+ 
Sbjct: 6   YETMKQLIADMKLPD----YRYEQIIKAIFSQHTSTFEKMSTLPLELKKSLINTFGPSVC 61

Query: 72  YPEIVDEKIS--CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTC 128
               V  + S   D   K L   P         +ETV +  K    + C+SSQ GC   C
Sbjct: 62  CTVPVACQTSGQAD---KILFSLPD-----GNRVETVNLHYKKGWESFCISSQCGCGFGC 113

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TGT    RN+TA+EI  Q+L                       G K+++I  MGMG
Sbjct: 114 QFCATGTLGHKRNMTADEITDQLLYF------------------HLNGHKLNSISFMGMG 155

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EPL N  N+  +L+I +DS     S+RRIT+ST G +P I R+  E   + LA SLH+  
Sbjct: 156 EPLAN-PNLFDALNILNDSSLFGLSQRRITISTIGIIPGIKRLTHEFPQINLAYSLHSPF 214

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
            + R+ L+P+NR +PL  +++A  ++   +   R+   Y+ML G+NDS   A  L+++L+
Sbjct: 215 ENQRSELMPVNRSFPLHEVMNALDNHIRHTGR-RLFLAYIMLNGVNDSVDHAKALVELLQ 273

Query: 308 GI-----PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
                     ++LIP+N        +  SD+  +  F + +  +G S   RT  G DI A
Sbjct: 274 DRGPWAHLYHVDLIPYNATDKTPRKFASSDKITMKRFRDILHANGISVATRTQFGSDISA 333

Query: 361 ACGQL 365
           ACGQL
Sbjct: 334 ACGQL 338


>gi|261407206|ref|YP_003243447.1| chloramphenicol/florfenicol resistance protein [Paenibacillus sp.
           Y412MC10]
 gi|261283669|gb|ACX65640.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
          Length = 346

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 178/376 (47%), Gaps = 48/376 (12%)

Query: 1   MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
           M +L K        E++ + L  +  P      R SQI + I+   I +F+ M+++ + V
Sbjct: 1   MKYLSK-------YEKIRKILSALNQPN----YRYSQITEAIFKNKIGNFEAMNNLPKPV 49

Query: 61  RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117
           R+ L +    +++      E+ S   + K L       I G   IE+V +  ++   + C
Sbjct: 50  RNELIKELGNNVLSITPKMEQKSNQVS-KILF-----AIPGDEYIESVRLSYQTGWESYC 103

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +SSQ GC   C+FC TGT  L RNLT +EI  Q+L                         
Sbjct: 104 ISSQCGCGFGCTFCATGTLGLKRNLTTDEITDQLLYF------------------TLNNH 145

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
            + ++  MGMGE L N   V  +L + +D        RRIT+ST G +P + ++ +E   
Sbjct: 146 PLDSVSFMGMGEALAN-PYVFDALHLLTDPKLFGLGHRRITVSTIGLLPGVKKLTKEFPQ 204

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + L  SLH+  +D R+ L+PIN  +PLE ++     +   +   ++   Y++L+GINDS 
Sbjct: 205 INLTFSLHSPFHDQRSELMPINNHFPLEEVMTVLDEHIQQTKR-KVYIAYILLRGINDST 263

Query: 297 RDALNLIKILKGIPA-----KINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349
           + A  +  +L+   +      +NLIP+N        ++ SDQ  I  F   +K  G    
Sbjct: 264 KHAKAVADLLRERGSWEHLYHVNLIPYNSTDATSQSFVESDQNSINMFLRILKSKGIHVT 323

Query: 350 IRTPRGLDILAACGQL 365
           +RT  G DI AACGQL
Sbjct: 324 VRTQFGSDINAACGQL 339


>gi|145344512|ref|XP_001416775.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577001|gb|ABO95068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 298

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 98/321 (30%), Positives = 145/321 (45%), Gaps = 30/321 (9%)

Query: 56  ISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPE-KSR 113
           + + V   L  +F +   ++  E  S DGT  K ++        G   +E   +   K R
Sbjct: 1   LPRAVVDALRANFVLYTTKVRHESRSGDGTTTKMIVEL-----AGGDVVEACVMRHAKGR 55

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
            TLCVSSQVGC + C+FC TGT   + NL+A EI  Q+  A                   
Sbjct: 56  TTLCVSSQVGCKMGCTFCATGTLGELGNLSAGEICEQLAHASR----------------- 98

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
             G  + N+V MGMGEPL N+ NV  ++   +   G   S  +IT+ST G +P +  +  
Sbjct: 99  --GDAVRNVVFMGMGEPLNNYRNVIDAIEAMTSDKGFGLSPAKITVSTVGVIPRMRTLRR 156

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           +  G  LA+SLHA +  LR  +VP    Y LE L+     +       +   EY +L G+
Sbjct: 157 DAPGTRLALSLHAPNQALRQKIVPTATAYKLEDLMATLDEHMASGPKMKTMIEYCVLGGV 216

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIK--RSGYSSP 349
           ND    A  L  +L+G    +NLIP NP      ++   ++ +    E +        + 
Sbjct: 217 NDDEACARELGALLRGKEVIVNLIPLNPTDTPAGHVPPTREAVQKMLEILTSPEFDLFTT 276

Query: 350 IRTPRGLDILAACGQLKSLSK 370
           +R   G DI  ACGQL   + 
Sbjct: 277 VRHEMGQDIAGACGQLALKTP 297


>gi|153939955|ref|YP_001392137.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum F str. Langeland]
 gi|205829642|sp|A7GH77|CFR_CLOBL RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|152935851|gb|ABS41349.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum F str. Langeland]
 gi|295320142|gb|ADG00520.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum F str. 230613]
          Length = 344

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 104/358 (29%), Positives = 167/358 (46%), Gaps = 39/358 (10%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI- 75
           +++ +  + +P      R  Q+ K I+ + I +F  M  + + +R  L   F      + 
Sbjct: 11  MKQIVSNLKLPD----YRYEQLTKAIFHQRIDNFDDMHILPKVLRMSLVNEFGKNVSSVI 66

Query: 76  -VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133
            V  + S    +K L             IE V +  K    + C+SSQ GC   C FC T
Sbjct: 67  PVFSQDSKQA-QKLLFELTD-----GERIEAVGLKYKQGWESFCISSQCGCGFGCRFCAT 120

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G+    RNLTA+EI  Q+L                         ++++I  MGMGE   N
Sbjct: 121 GSAGFKRNLTADEITDQLLYF------------------YFNDHRLNSISFMGMGEAFAN 162

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            + +  ++ I +D      S+RRIT+ST G +P I  + ++   V LA SLH+     R+
Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQSLTQKFPQVNLAFSLHSPFESQRS 221

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311
            L+PIN+++PL  ++     +  +   RR+   Y+ML+GINDS   A  ++ +LK   + 
Sbjct: 222 DLMPINKRFPLNQVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSW 280

Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                I+LIP+N      +       I  F   +K++G S+ +RT  G +I AACGQL
Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSNAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338


>gi|330894491|gb|EGH27152.1| radical SAM protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 249

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 112/238 (47%), Positives = 146/238 (61%), Gaps = 12/238 (5%)

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           LTA E++ QV +A    G  P   D          R I+N+VMMGMGEPL NFDNV  ++
Sbjct: 1   LTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMMGMGEPLLNFDNVIAAM 50

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261
            +  D +G   SKRR+TLSTSG VP I  + + I V LA+SLHA ++ LRN LVPIN+KY
Sbjct: 51  HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 110

Query: 262 PLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           PL+ML+D+CR Y      +R+ T EY MLK IND    A+ +I++LK  P KINLIPFNP
Sbjct: 111 PLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 170

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL-KSLSKRIPKVPR 377
           +P   Y       I  F + + ++GY+  +RT RG DI AACGQL   +  R  +  R
Sbjct: 171 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVMDRTRRSER 228


>gi|148380815|ref|YP_001255356.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933477|ref|YP_001385100.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153935966|ref|YP_001388569.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A str. Hall]
 gi|205829639|sp|A7FX96|CFR_CLOB1 RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|205829640|sp|A5I5U3|CFR_CLOBH RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|148290299|emb|CAL84423.1| putative florfenicol resistance protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929521|gb|ABS35021.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931880|gb|ABS37379.1| florfenicol/chloramphenicol resistance protein [Clostridium
           botulinum A str. Hall]
          Length = 344

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 105/358 (29%), Positives = 168/358 (46%), Gaps = 39/358 (10%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPE 74
           +++    + +P      R  Q+ K I+ + I +F  M  + + +R  L   F  ++    
Sbjct: 11  MKQIASNLKLPD----YRYEQLTKAIFHQRIDNFHDMHILPKALRIALVNEFGKNVSSVT 66

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133
            +  + S    +K L             IE V +  K    + C+SSQ GCS  C FC T
Sbjct: 67  PIFSQDSKQA-QKLLFELTD-----GERIEAVGLKYKQGWESFCISSQCGCSFGCRFCAT 120

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G+    RNLTA+EI  Q+L                         ++++I  MGMGE   N
Sbjct: 121 GSAGFKRNLTADEITDQLLYF------------------YFNDHRLNSISFMGMGEAFAN 162

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
            + +  ++ I +D      S+RRIT+ST G +P I R+ +E   V LA SLH+     R+
Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTKEFPQVNLAFSLHSPFESQRS 221

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311
            L+PIN+++PL  ++     +  +   RR+   Y+ML+GINDS   A  +I +L+   + 
Sbjct: 222 DLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAIIGLLRNRGSW 280

Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                I+LIP+N      +       I  F   +K++  S+ +RT  G +I AACGQL
Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKASISATVRTQFGSEISAACGQL 338


>gi|307103703|gb|EFN51961.1| hypothetical protein CHLNCDRAFT_27272 [Chlorella variabilis]
          Length = 384

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 102/368 (27%), Positives = 173/368 (47%), Gaps = 69/368 (18%)

Query: 20  ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79
           A   IG   +H+     +++  +       +  + D  +  R  L+  F +    ++  +
Sbjct: 21  AFEAIGANPKHIP----RLYNHMIRNPGGGWADLPDFPKAARAALDAGFVLHTTRLLTVQ 76

Query: 80  ISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKS----------------RGTLCVSSQV 122
            S DG T K L++         +++E V +   +                R TLCVSS+V
Sbjct: 77  RSSDGETTKLLVQLQD-----GLQVEAVVMQYDNTGGWVDGWVAAMEGGKRTTLCVSSEV 131

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C+FC TGT  L  +LTA EI+ Q++ A S+                    +I NI
Sbjct: 132 GCAMGCTFCATGTMGLSADLTAGEIVEQLVHASSVS-------------------RIQNI 172

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAI 241
           V MGMGEPL N++ V+ ++ + +D    +  +R++T+ST G +P + ++ +++  V LA+
Sbjct: 173 VFMGMGEPLNNYEAVRTAVRLMTDPSSFALRRRKVTVSTVGVIPRMLQMADDMPGVSLAL 232

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK-GINDSPRDAL 300
           SLHA + +LR  +                  Y   +  +R+  EYVML   IN +   A 
Sbjct: 233 SLHAPTQELRQTI------------------YLERT-GQRVFVEYVMLGPDINCTQAHAH 273

Query: 301 NLIKILKGIPAKINLIPFNPW--PGCEYLCSDQKDIVTFSECIK-RSGYSSPIRTPRGLD 357
            L ++L+G    +NLIP+NP   P   +   ++     F   ++ + G +  IR  +G D
Sbjct: 274 QLGRLLQGRNVLVNLIPWNPILSPSITFAAPEEGATAAFHSILRYQYGVNCTIRAEKGQD 333

Query: 358 ILAACGQL 365
           I  ACGQL
Sbjct: 334 ISGACGQL 341


>gi|84997417|ref|XP_953430.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65304426|emb|CAI76805.1| hypothetical protein, conserved [Theileria annulata]
          Length = 399

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 170/375 (45%), Gaps = 55/375 (14%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           + + L    +PQ     R SQI+  IY     +F  M  + + +R  L+ +F      + 
Sbjct: 10  IAKYLKDNSVPQ----YRLSQIFNSIYRNKTPNFLSMYHLPKILRSGLHDNFEGSLLSLN 65

Query: 77  DEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135
               S  D  +K L +           IE V +   +  +LC+S+QVGCS  CSFC TG 
Sbjct: 66  PVSESNSDRAKKVLFQNSD-----GSRIEAVLLHFNTHKSLCISAQVGCSYACSFCATGK 120

Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
             L RNLT +EI  QVL  + L                  G KI +I  MGMGEPL N  
Sbjct: 121 IGLKRNLTVDEITDQVLYFQQL------------------GHKIDSISFMGMGEPLSN-P 161

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNIL 254
           NV KS++I +D    + S RRI +ST G +P I ++ +E   V LA SLH+   + RN +
Sbjct: 162 NVFKSINILTDKRYFALSPRRINVSTVGILPGIKKLNKEYPYVNLAYSLHSPFTEERNEM 221

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---- 310
           VP+N  YP +            +   RI   Y+++K  ND+      LI I+KG P    
Sbjct: 222 VPVNLLYPFQEAYPLMDERIRQTGR-RIWISYILIKDKNDTKEHVEELINIIKGRPKEVQ 280

Query: 311 --AKINLIPFNPWPG------------------CEYLCSDQKDIVTFSECIKRSGYSSPI 350
               +NLIP+N                       +Y  ++    + F + ++++G S   
Sbjct: 281 YLYHVNLIPYNIGMPQILVLTHQTTFLCLVKSIDKYESTEHDQSLKFEKYLRKNGISCSY 340

Query: 351 RTPRGLDILAACGQL 365
           R   G +I AACGQL
Sbjct: 341 RNYFGRNIDAACGQL 355


>gi|298708530|emb|CBJ49163.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 425

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 187/381 (49%), Gaps = 33/381 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF-QGMSDISQEVRHLLNQ 66
            L+ +  +EL + L   G        R   +W  +   G+  F      ++ +   +L  
Sbjct: 63  DLLSLNFDELSQILGGSG--------RAKMVWSAL-SAGVDPFGDAAEFLTDKTAAVLKD 113

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVGC 124
               +  ++V E +S  GTRK L++         +E+ETV IP+   SR T+CVSSQ+GC
Sbjct: 114 TVERLPWQVVRESVSSCGTRKLLVQLED-----GLEVETVVIPDLSGSRSTVCVSSQIGC 168

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           +  C FC TG   LVRNLTA EIL QV  AR  + +                  ++N V 
Sbjct: 169 AKNCQFCMTGKMGLVRNLTAGEILGQVFFARETVREHGMP-------------PLTNAVY 215

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEPL N   V +SL + +     + +K +I++ST G  P   R  + +   LA S+H
Sbjct: 216 MGMGEPLDNPGAVTQSLQVLTHPFAFAMAKSKISVSTVGPSPAAIRRMKGMPSRLAWSVH 275

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++D+R +LVP    + +  L DA            +  E V+++G+NDSP  A  L  
Sbjct: 276 AATDDVRRLLVPTTV-HSMAELRDAFAEVLQSRRREHLFVEVVLIEGMNDSPELARALAS 334

Query: 305 ILKGIPAK--INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +L+ +P +  INL+P+N      +  S ++ +  F   + + G+ + IRT RG +  +AC
Sbjct: 335 LLRPLPIRAGINLLPYNDTGHPFFRASPKESVEEFQRVLTQEGFVATIRTARGDEESSAC 394

Query: 363 GQLKSLSKRIPKVPRQEMQIT 383
           GQL + +     + ++  + T
Sbjct: 395 GQLATTANNERALKQRHRRST 415


>gi|195953765|ref|YP_002122055.1| radical SAM enzyme, Cfr family [Hydrogenobaculum sp. Y04AAS1]
 gi|195933377|gb|ACG58077.1| radical SAM enzyme, Cfr family [Hydrogenobaculum sp. Y04AAS1]
          Length = 340

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 122/354 (34%), Positives = 181/354 (51%), Gaps = 35/354 (9%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           LE+    +       + R SQI  W + + I D + M+DI + +R  L   F ++  +  
Sbjct: 5   LEDYF-NLEQKLNLEKYRISQIKSWAFKKKITDIELMTDIPKSLRQELKIDFHVLSLDSF 63

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
            E    D T K++ +           +E+V I EK   TLC+S+Q+GC++ C FC +   
Sbjct: 64  LE--GEDST-KFVFKTKDGYF-----VESVLIKEKDHYTLCISTQIGCAVGCKFCVSTIG 115

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
            L+RNL+  EI+ Q      L   F                 I NIV MGMGEPL NF+N
Sbjct: 116 GLLRNLSFSEIVDQYFYISILRNTF-----------------IRNIVFMGMGEPLANFEN 158

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHAVSNDLRNI 253
           +KK+  I         SKR IT+STS +   I ++ E+     + LAISL+A  ++ R  
Sbjct: 159 LKKASFIFLKE--FELSKRHITISTSAYTNYIKKLKEDSFLNKLNLAISLNASDDETRKA 216

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK- 312
           L+P N    L+ L +  + YP L   RRIT EYV++K IN S +DA NL+ +LK +  K 
Sbjct: 217 LMP-NVIGSLKELFEILKTYP-LEPRRRITIEYVLIKDINSSLKDAKNLVNLLKNLKHKT 274

Query: 313 -INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +NLIP+N  P   +    + DI  F + + ++  S  IR  +GL++ AACG L
Sbjct: 275 KVNLIPYNENPMLSFERPVESDIYRFQQELLKNDISCTIRWSKGLELAAACGHL 328


>gi|154685028|ref|YP_001420189.1| florfenicol/chloramphenicol resistance like protein [Bacillus
           amyloliquefaciens FZB42]
 gi|205829624|sp|A7Z1T2|CFR_BACA2 RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|154350879|gb|ABS72958.1| florfenicol/chloramphenicol resistance like protein [Bacillus
           amyloliquefaciens FZB42]
          Length = 349

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 181/368 (49%), Gaps = 41/368 (11%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPE 74
           ++E L +   P      R +QI   ++   I  F  ++ + + +R LL + F  SI+   
Sbjct: 10  IQEFLKQNKFPD----FRMNQIKNAVFQGRINHFNEITVLPKSLRKLLIEEFGESILNIA 65

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133
            +  + S   T K L       I G  +IETV +  K+   + C+SSQ GC   C FC T
Sbjct: 66  PLKVQHSEQVT-KVLFE-----ISGDEKIETVNMKYKAGWESFCISSQCGCHFGCKFCAT 119

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   L RNLT++E+  Q+L                       G  I +I  MGMGE L N
Sbjct: 120 GDIGLKRNLTSDEMTDQILYF------------------HLKGHSIDSISFMGMGEALAN 161

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252
              V  +L + ++    + S RR+++ST G +P I ++ ++   V L  SLH+  N+ R+
Sbjct: 162 VQ-VFDALHVLTNPELFALSPRRLSISTIGIIPGIKKITQDYPQVNLTFSLHSPFNEQRS 220

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK----- 307
            L+PIN +YPL  ++D    +  +++  ++   Y+ML G+NDS   A  ++ +L+     
Sbjct: 221 KLMPINERYPLLEVMDTLDEHIRVTSR-KVYIAYIMLPGVNDSIDHANEVVNLLRSRYKR 279

Query: 308 GIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           G    +N+I +NP       +   ++K +V F + +K +G +  +R+  G+DI AACGQL
Sbjct: 280 GNLFHVNIIRYNPTVSSPMRFEEVNEKQVVNFYKKLKSAGINVTVRSQFGIDIDAACGQL 339

Query: 366 KSLSKRIP 373
               ++  
Sbjct: 340 YGNYQKNK 347


>gi|294461088|gb|ADE76111.1| unknown [Picea sitchensis]
          Length = 384

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 109/367 (29%), Positives = 167/367 (45%), Gaps = 48/367 (13%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           L     K GI  R + +    IWK++ +    +   +  +S     +L   F  +   + 
Sbjct: 15  LRNEFKKRGINIRCIPV----IWKYLLLNENAEVFEVPGLSNAAYDVLRSKFIAMTSTVK 70

Query: 77  DEKISCD-GTRKWLLRFPARCIGGPVEIETVYI--------------PEKSRGTLCVSSQ 121
               S D  T K L++           IETV +              P   R TLCVSSQ
Sbjct: 71  ATVKSADQSTTKLLIQLQ-----NGSFIETVIMSYDTRLGTYAGSPRPGGPRATLCVSSQ 125

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC + C+FC TG+     NL+  EI+ Q++ A  +                    +I N
Sbjct: 126 VGCKMGCTFCATGSMGFKSNLSVGEIVEQLVHAARIS-------------------QIRN 166

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLA 240
           +V MGMGEPL N+ +V +++           + R IT+S  G +  I  +  ++  V LA
Sbjct: 167 VVFMGMGEPLNNYKSVVEAVRSMI-GHCFQLAPRHITISAVGVIHCINNLKYDLPNVNLA 225

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA   ++R  ++P  R +PL  L+DA   Y   S   +I  EY+ML GIND  + A 
Sbjct: 226 VSLHAPLQEIRCQIMPAARAFPLGKLMDALHAYQEHSKR-KIFIEYIMLDGINDQEQQAH 284

Query: 301 NLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDI 358
            L K+L+     +NLI FNP     +Y  S ++++  F + ++      + +R   G DI
Sbjct: 285 LLGKLLEEYEVVVNLISFNPIGSISKYRTSKKENVELFQKILRGVYNIRTTVRQEMGQDI 344

Query: 359 LAACGQL 365
             ACGQL
Sbjct: 345 SGACGQL 351


>gi|162449851|ref|YP_001612218.1| hypothetical protein sce1580 [Sorangium cellulosum 'So ce 56']
 gi|205829637|sp|A9FD89|Y1580_SORC5 RecName: Full=Probable RNA methyltransferase sce1580
 gi|161160433|emb|CAN91738.1| hypothetical protein sce1580 [Sorangium cellulosum 'So ce 56']
          Length = 398

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 101/298 (33%), Positives = 149/298 (50%), Gaps = 20/298 (6%)

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
            EI +   + D T + +LR      G    IE+V IP  +R TLCVSSQVGC+  CSFC 
Sbjct: 114 LEIAERAPAQDDTLRLVLR-----AGDGALIESVLIPGPARTTLCVSSQVGCARACSFCE 168

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           TG   L R L A EI+ QV +AR+L  +               G  + N+V MGMGEP  
Sbjct: 169 TGRLGLERQLAAGEIVDQVRIARALAAE-------------RGGAPLRNLVFMGMGEPFD 215

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRN 252
           N   V K++ + +D     F+   +T+ST G    I     +    LA+SL+A  +  R 
Sbjct: 216 NLGEVLKAIRLLTDPRAFRFAPSHVTVSTVGVADKIEPFFRDARAELAVSLNAPDDARRQ 275

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
            ++P+N ++ +  L +A      L   RR+ FEYV+    ND+P DA  L   + G+  +
Sbjct: 276 AIMPVNARFSMAALKEAIAR--ALPPGRRVLFEYVLFDRFNDAPEDADLLAAYVAGLRCR 333

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           +N+IP NP P           +  F   +   G ++ +R PRG D+  ACGQL  +++
Sbjct: 334 VNVIPCNPGPDPALRPPSAARLDAFVARLSGHGVTTLVRRPRGRDVGGACGQLAGMAR 391


>gi|224367133|ref|YP_002601296.1| hypothetical protein HRM2_00090 [Desulfobacterium autotrophicum
           HRM2]
 gi|223689849|gb|ACN13132.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 342

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 187/368 (50%), Gaps = 33/368 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI--SQEVRHLLN 65
           +L+ M  +E+ + L   G  +         + + +  RG  +F    +   SQ +   L 
Sbjct: 2   NLLEMTFKEVSQLLY-NGFGRGD--YHAGALLREVIKRGNHNFSTAPEFERSQGMSLALV 58

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             + +    +VD ++  D T K++ R    C      IE+V IP K   TLCVS+Q GC 
Sbjct: 59  SDYELPDFTVVD-QMEEDNTVKFVTRLHDGC-----SIESVIIPMKQYNTLCVSTQAGCR 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC T      RNL   EI  Q+  AR                  ++G+KISNIV M
Sbjct: 113 MGCRFCETARSGFKRNLQVHEITGQLFSAR-----------------NTLGKKISNIVFM 155

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG--EEIGVMLAISL 243
           GMGEP  NFDN+ +S+ + +D  G   + R +T+ST G VP I  +       + LA+S+
Sbjct: 156 GMGEPFDNFDNLVRSIRVFNDQKGFDVAFRHMTVSTCGLVPGIRALAGLGLTQLSLAVSV 215

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+  +++R++L+P+NR+YPL +L  A   YP L   R I  EYV++KG+NDS   A  L+
Sbjct: 216 HSAIDEVRSVLMPVNRRYPLNVLRAALADYP-LHKRRYILVEYVLIKGVNDSQEAAAALV 274

Query: 304 KILKGIPAKINLIPFNP--WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           + L  +  ++NLI +NP   P  E+   D   +  F+  ++ SG     R  +G  ++A 
Sbjct: 275 QYLVPLKVRVNLIAYNPGRDPDPEFQGVDDCSMNQFASWLEDSGLFVIKRWSKGQKLMAG 334

Query: 362 CGQLKSLS 369
           CGQL + +
Sbjct: 335 CGQLSTRT 342


>gi|163816252|ref|ZP_02207619.1| hypothetical protein COPEUT_02440 [Coprococcus eutactus ATCC 27759]
 gi|166032398|ref|ZP_02235227.1| hypothetical protein DORFOR_02101 [Dorea formicigenerans ATCC
           27755]
 gi|167747584|ref|ZP_02419711.1| hypothetical protein ANACAC_02305 [Anaerostipes caccae DSM 14662]
 gi|167771778|ref|ZP_02443831.1| hypothetical protein ANACOL_03150 [Anaerotruncus colihominis DSM
           17241]
 gi|210615433|ref|ZP_03290560.1| hypothetical protein CLONEX_02776 [Clostridium nexile DSM 1787]
 gi|227498634|ref|ZP_03928778.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|283796286|ref|ZP_06345439.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1]
 gi|331088114|ref|ZP_08337035.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 3_1_46FAA]
 gi|158448447|gb|EDP25442.1| hypothetical protein COPEUT_02440 [Coprococcus eutactus ATCC 27759]
 gi|166028121|gb|EDR46878.1| hypothetical protein DORFOR_02101 [Dorea formicigenerans ATCC
           27755]
 gi|167652946|gb|EDR97075.1| hypothetical protein ANACAC_02305 [Anaerostipes caccae DSM 14662]
 gi|167666418|gb|EDS10548.1| hypothetical protein ANACOL_03150 [Anaerotruncus colihominis DSM
           17241]
 gi|210150282|gb|EEA81291.1| hypothetical protein CLONEX_02776 [Clostridium nexile DSM 1787]
 gi|226904090|gb|EEH90008.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|291076221|gb|EFE13585.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1]
 gi|291543137|emb|CBL16247.1| radical SAM enzyme, Cfr family [Ruminococcus bromii L2-63]
 gi|330409070|gb|EGG88529.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 329

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/369 (29%), Positives = 171/369 (46%), Gaps = 57/369 (15%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
            G   +E+ E +          + R   ++  +Y +                    ++ S
Sbjct: 17  YGFTYKEMSEVI-------GEDKARA--LYTELYKQPFH----------------KENLS 51

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           I   ++     S D T K++             IETV+I  +  GT+CVS+QVGCS+ C 
Sbjct: 52  ISTKKVYK---SSD-TEKYVYELKDNRY-----IETVFIKRRDGGTVCVSTQVGCSVGCI 102

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +G    VRNLT  EI+ QV+L R                      K++ IV MGMGE
Sbjct: 103 FCESGRNGFVRNLTPSEIVQQVVLIRQ---------------------KVNRIVFMGMGE 141

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           PL N+DN+  ++ I  D  GL+F    IT+ST G V  + ++ EE + + L ISLHA + 
Sbjct: 142 PLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVNQLKKLREEHLKIQLTISLHAATQ 201

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
             RN ++P    Y +E ++     Y    N  ++ F Y++L GIND   D   L K  KG
Sbjct: 202 AARNCIIPHMHMYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGINDRSSDIRQLAKWFKG 260

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
               IN++ +NP    +     ++++V F   ++++G    +R   G +I AACGQL + 
Sbjct: 261 KNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRVSHGREIKAACGQLANT 320

Query: 369 SKRIPKVPR 377
             +  K  +
Sbjct: 321 YNKAKKQQK 329


>gi|254976991|ref|ZP_05273463.1| hypothetical protein CdifQC_16843 [Clostridium difficile QCD-66c26]
 gi|255651909|ref|ZP_05398811.1| hypothetical protein CdifQCD_17123 [Clostridium difficile
           QCD-37x79]
 gi|260687131|ref|YP_003218265.1| hypothetical protein CDR20291_1774 [Clostridium difficile R20291]
 gi|293402444|ref|ZP_06646580.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|296450747|ref|ZP_06892500.1| cfr family radical SAM enzyme [Clostridium difficile NAP08]
 gi|306521660|ref|ZP_07408007.1| hypothetical protein CdifQ_19485 [Clostridium difficile QCD-32g58]
 gi|323485992|ref|ZP_08091323.1| cfr family radical SAM enzyme [Clostridium symbiosum WAL-14163]
 gi|323692843|ref|ZP_08107070.1| cfr family Radical SAM enzyme [Clostridium symbiosum WAL-14673]
 gi|332652412|ref|ZP_08418157.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16]
 gi|164512331|emb|CAO78566.2| hypothetical protein [Clostridium difficile]
 gi|260213148|emb|CBE04584.1| putative uncharacterized protein [Clostridium difficile R20291]
 gi|291304107|gb|EFE45360.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291541455|emb|CBL14565.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus bromii L2-63]
 gi|296260591|gb|EFH07433.1| cfr family radical SAM enzyme [Clostridium difficile NAP08]
 gi|323400559|gb|EGA92926.1| cfr family radical SAM enzyme [Clostridium symbiosum WAL-14163]
 gi|323503157|gb|EGB18992.1| cfr family Radical SAM enzyme [Clostridium symbiosum WAL-14673]
 gi|332517558|gb|EGJ47161.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16]
          Length = 327

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 112/367 (30%), Positives = 174/367 (47%), Gaps = 57/367 (15%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
            G   +E+ E + +              +++ +Y +  R                 ++ S
Sbjct: 17  YGFTYKEMSEVIGENE---------AKALYEELYKQLPR----------------KKNLS 51

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           ++   I     S D T K++             IETV+I  +  GT+CVS+QVGC + C 
Sbjct: 52  MLVKNICK---SSD-TEKYVYELKDNKY-----IETVFIKRRDGGTVCVSTQVGCPVGCI 102

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +G    VRNLT+ EI+ Q++L R                     RK++ IV MGMGE
Sbjct: 103 FCESGRNGFVRNLTSSEIVQQIILLR---------------------RKVNRIVFMGMGE 141

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           PL N+DN+ K++ I  D  GL+F    IT+ST G V  + ++ EE + + L ISLHA + 
Sbjct: 142 PLFNYDNLIKAIHILRDRYGLNFPTDGITISTVGPVDQLKKLREEHLKIQLTISLHAATQ 201

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
             RN ++P  R Y +E ++     Y    N  +I F Y++L GIND P D   L K  +G
Sbjct: 202 SARNRIIPHMRIYAIEDVVKQALSYSERHNR-KIVFAYLLLPGINDRPSDVRQLAKWFRG 260

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
               IN++ +NP          +++IV F   ++++G    +R   G +I AACGQL + 
Sbjct: 261 KKVMINVLQYNPTSNSRIKAPQKREIVAFKHQLEQAGLEVTMRVSHGREINAACGQLANT 320

Query: 369 SKRIPKV 375
             +  K 
Sbjct: 321 YNKFKKK 327


>gi|55297177|dbj|BAD68852.1| florfenicol resistance protein-like [Oryza sativa Japonica Group]
          Length = 247

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 102/240 (42%), Positives = 143/240 (59%), Gaps = 14/240 (5%)

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC+TG   L ++L+  EI+ Q + AR L  D  G               I+N+V M
Sbjct: 1   MNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFGS--------------ITNVVFM 46

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N DNV K+ +I  D  GL FS R++T+STSG VP I R  +E    LA+SL+A
Sbjct: 47  GMGEPLHNIDNVLKASAIMVDEQGLQFSPRKVTVSTSGLVPQIKRFLQESNCALAVSLNA 106

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++++RN ++PINRKY L +L+   R    L    ++ FEYVML G+NDS  DA  L+ +
Sbjct: 107 TTDEVRNWIMPINRKYNLSLLLGTLREEIRLKKKYKVFFEYVMLAGVNDSVDDAKRLVDL 166

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           ++GIP KINLI FNP  G ++  +  + I+ F   + + G    +R  RG D +AACGQL
Sbjct: 167 VRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNILIQDGLVVFVRLSRGDDQMAACGQL 226


>gi|266622739|ref|ZP_06115674.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
 gi|288865503|gb|EFC97801.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
 gi|291557353|emb|CBL34470.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium siraeum V10Sc8a]
 gi|295092179|emb|CBK78286.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium cf.
           saccharolyticum K10]
          Length = 328

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 174/366 (47%), Gaps = 57/366 (15%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
            G   +E+ E + +              +++ +Y +  R                 ++ S
Sbjct: 17  YGFTYKEMSEVIGENE---------AKALYEELYKQLPR----------------KKNLS 51

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           ++   I     S D T K++             IETV+I  +  GT+CVS+QVGC + C 
Sbjct: 52  MLVKNICK---SSD-TEKYVYELKDNKY-----IETVFIKRRDGGTVCVSTQVGCPVGCI 102

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +G    VRNLT+ EI+ Q++L R                     RK++ IV MGMGE
Sbjct: 103 FCESGRNGFVRNLTSSEIVQQIILLR---------------------RKVNRIVFMGMGE 141

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           PL N+DN+ K++ I  D  GL+F    IT+ST G V  + ++ EE + + L ISLHA + 
Sbjct: 142 PLFNYDNLIKAIHILRDRYGLNFPTDGITISTVGPVDQLKKLREEHLKIQLTISLHAATQ 201

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
             RN ++P  R Y +E ++     Y    N  +I F Y++L GIND P D   L K  +G
Sbjct: 202 SARNRIIPHMRIYAIEDVVKQALSYSERHNR-KIVFAYLLLPGINDRPSDVRQLAKWFRG 260

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
               IN++ +NP          +++IV F   ++++G    +R   G +I AACGQL + 
Sbjct: 261 KKVMINVLQYNPTSNSRIKAPQKREIVAFKHQLEQAGLEVTMRVSHGREINAACGQLANT 320

Query: 369 SKRIPK 374
             +  K
Sbjct: 321 YNKFKK 326


>gi|212694595|ref|ZP_03302723.1| hypothetical protein BACDOR_04123 [Bacteroides dorei DSM 17855]
 gi|212663096|gb|EEB23670.1| hypothetical protein BACDOR_04123 [Bacteroides dorei DSM 17855]
          Length = 273

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/292 (33%), Positives = 148/292 (50%), Gaps = 29/292 (9%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
            K +L+G   +E+++ +  +G+P    +    QI  W+Y + +     M+++S + R  L
Sbjct: 4   PKTALLGRTLDEIQQIVRNLGMP----KFAAKQITSWLYDKKVETIDEMTNLSLKHRETL 59

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
            + + +     V+E  S DGT K+L R PA        IE VYIP++ R TLCVSSQVGC
Sbjct: 60  KEGYEVGASAPVEEMRSVDGTVKYLFRTPAHNF-----IEAVYIPDEDRATLCVSSQVGC 114

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG Q    NL+A +IL Q+                          K++N+V 
Sbjct: 115 KMNCKFCMTGKQGFTANLSAHQILNQIYSI-------------------PEREKLTNLVF 155

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
           MGMGEP  N D V K L I +   G  +S +RIT+S+ G    + R   E    LAIS+H
Sbjct: 156 MGMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMH 215

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
                 R  L+P  + + +  +ID   +Y   S  RR++FEY++ KG+N+  
Sbjct: 216 TPIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNERD 266


>gi|160938516|ref|ZP_02085871.1| hypothetical protein CLOBOL_03414 [Clostridium bolteae ATCC
           BAA-613]
 gi|167760863|ref|ZP_02432990.1| hypothetical protein CLOSCI_03251 [Clostridium scindens ATCC 35704]
 gi|225375530|ref|ZP_03752751.1| hypothetical protein ROSEINA2194_01155 [Roseburia inulinivorans DSM
           16841]
 gi|239623023|ref|ZP_04666054.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|240147536|ref|ZP_04746137.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
 gi|158438889|gb|EDP16646.1| hypothetical protein CLOBOL_03414 [Clostridium bolteae ATCC
           BAA-613]
 gi|167661466|gb|EDS05596.1| hypothetical protein CLOSCI_03251 [Clostridium scindens ATCC 35704]
 gi|225212619|gb|EEG94973.1| hypothetical protein ROSEINA2194_01155 [Roseburia inulinivorans DSM
           16841]
 gi|239522602|gb|EEQ62468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
 gi|257200248|gb|EEU98532.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
          Length = 329

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 113/385 (29%), Positives = 176/385 (45%), Gaps = 64/385 (16%)

Query: 1   MNFLKKESL-------IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM 53
           M  L K +L        G   +E+ E +          + R   ++  +Y +        
Sbjct: 1   MKHLPKSTLTEILNDPYGFTYKEMSEVI-------GEDKARA--LYAELYKQPFH----- 46

Query: 54  SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR 113
                       ++ SI   ++     S D T K++             IETV+I  +  
Sbjct: 47  -----------KKNLSISTKKVYK---SSD-TEKYVYELKDNRY-----IETVFIKRRDG 86

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
           GT+CVS+QVGCS+ C FC +G    VRNLT  EI+ QV+L R                  
Sbjct: 87  GTVCVSTQVGCSVGCIFCESGRNGFVRNLTPSEIVQQVILIRQ----------------- 129

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
               K++ IV MGMGEPL N+DN+  ++ I  D  GL+F    IT+ST G V  + ++ E
Sbjct: 130 ----KVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVNQLKKLRE 185

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E + + L ISLHA +   RN ++P    Y +E ++     Y    N  ++ F Y++L GI
Sbjct: 186 EHLKIQLTISLHAATQAARNCIIPHMHMYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGI 244

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND   D   L K  KG    IN++ +NP    +     ++++V F   ++++G    +R 
Sbjct: 245 NDRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRV 304

Query: 353 PRGLDILAACGQLKSLSKRIPKVPR 377
             G +I AACGQL +   +  K  +
Sbjct: 305 SHGREIKAACGQLANTYNKAKKQQK 329


>gi|261324195|ref|ZP_05963392.1| ribosomal RNA large subunit methyltransferase N [Brucella neotomae
           5K33]
 gi|261300175|gb|EEY03672.1| ribosomal RNA large subunit methyltransferase N [Brucella neotomae
           5K33]
          Length = 307

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 136/207 (65%), Positives = 168/207 (81%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K SLIGM REE+  AL+  G+P+R V+MR SQ+W W+YVRG+ DF  M +IS+++R +L 
Sbjct: 27  KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           QHF+I  PE+V+E+IS DGTRKWL RFP R  G PVEIE+VYIPE+ RGTLC+SSQVGC+
Sbjct: 87  QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           LTCSFC+TGTQKLVRNLT+EEIL Q+L AR  LGDFP  +  +G ++P+ GRKI+NIVMM
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSF 212
           GMGEPL NF+ VKK+L IASD  GLSF
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSF 233


>gi|225388237|ref|ZP_03757961.1| hypothetical protein CLOSTASPAR_01972 [Clostridium asparagiforme
           DSM 15981]
 gi|225045705|gb|EEG55951.1| hypothetical protein CLOSTASPAR_01972 [Clostridium asparagiforme
           DSM 15981]
          Length = 304

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 108/328 (32%), Positives = 165/328 (50%), Gaps = 38/328 (11%)

Query: 55  DISQEVRHLL------NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI 108
           + ++ +   L       ++ S++   I     S D T K++             IETV+I
Sbjct: 8   NEAKALYEELYKQLPRKKNLSMLVKNICK---SSD-TEKYVYELKDNKY-----IETVFI 58

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
             +  GT+CVS+QVGC + C FC +G    VRNLT+ EI+ Q++L R             
Sbjct: 59  KRRDGGTVCVSTQVGCPVGCIFCESGRNGFVRNLTSSEIVQQIILLR------------- 105

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
                   RK++ IV MGMGEPL N+DN+ K++ I  D  GL+F    IT+ST G V  +
Sbjct: 106 --------RKVNRIVFMGMGEPLFNYDNLIKAIHILRDRYGLNFPTDGITISTVGPVDQL 157

Query: 229 ARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            ++ EE + + L ISLHA +   RN ++P  R Y +E ++     Y    N  +I F Y+
Sbjct: 158 KKLREEHLKIQLTISLHAATQSARNRIIPHMRIYAIEDVVKQALSYSERHNR-KIVFAYL 216

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347
           +L GIND P D   L K  +G    IN++ +NP          +++IV F   ++++G  
Sbjct: 217 LLPGINDRPSDVRQLAKWFRGKKVMINVLQYNPTSNSRIKAPQKREIVAFKHQLEQAGLE 276

Query: 348 SPIRTPRGLDILAACGQLKSLSKRIPKV 375
             +R   G +I AACGQL +   +  K 
Sbjct: 277 VTMRVSHGREINAACGQLANTYNKFKKK 304


>gi|294670879|ref|ZP_06735735.1| hypothetical protein NEIELOOT_02583 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307366|gb|EFE48609.1| hypothetical protein NEIELOOT_02583 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 219

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 101/232 (43%), Positives = 145/232 (62%), Gaps = 16/232 (6%)

Query: 29  RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88
                R  Q+ +W++  G  DF  M+D+++ +R  L +   +  P ++  + S DGTRKW
Sbjct: 2   GEKPFRAKQVMRWMHWGGAADFAEMTDLAKSLRAKLEECAIVGVPALMTAQESKDGTRKW 61

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           LL      +G    +ETV+IPE  RGTLC+SSQVGC+L C+FC TG Q   RNLT  EI+
Sbjct: 62  LL-----DVGTGNGVETVFIPEADRGTLCISSQVGCALECTFCSTGRQGFNRNLTTAEII 116

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q+  A   LG  P  E           R ISN+VMMGMGEPL N+DNV ++L++  D  
Sbjct: 117 GQLWWANKALGATPKNE-----------RMISNVVMMGMGEPLANYDNVVRALAVMLDDH 165

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
           G S S+RR+T+STSG VP + R+ E++ V LA+SLHA ++++R+ +VP+N+ 
Sbjct: 166 GYSLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDEVRDQIVPLNKN 217


>gi|56962848|ref|YP_174574.1| florfenicol/chloramphenicol resistance protein [Bacillus clausii
           KSM-K16]
 gi|81366753|sp|Q5WJ42|CFR_BACSK RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
           AltName: Full=23S rRNA m8A2503 methyltransferase
 gi|56909086|dbj|BAD63613.1| florfenicol/chloramphenicol resistance protein [Bacillus clausii
           KSM-K16]
          Length = 350

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 113/371 (30%), Positives = 178/371 (47%), Gaps = 40/371 (10%)

Query: 14  REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SII 71
            E L+  L  +  P      R  QI + I+   I  F  M+ + + +R  L   F  SI+
Sbjct: 10  YERLKHFLNALNEPT----YRYKQITEAIFKHRIGAFNKMTTLPKALRESLINEFGPSIL 65

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSF 130
             E V E  S   T K LL+     + G  ++E V +  ++   + C+SSQ GC L C+F
Sbjct: 66  TVEPVLETTSQQVT-KVLLK-----VAGNNQVEAVRMHYEAGWESFCISSQCGCGLGCTF 119

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TG   L +NL+A+E+  Q+L                       G  + ++  MGMGE 
Sbjct: 120 CSTGAIGLKQNLSADEMTDQLLYF------------------YLKGHSLDSVSFMGMGEA 161

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
           L N   +  +L++  D    + S RRIT+ST G +PNI R+      + L  SLH+  +D
Sbjct: 162 LANVR-IFDALNVLVDRQLFALSPRRITVSTVGIIPNIQRMTSSFPQMNLTFSLHSPFHD 220

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG- 308
            R+ L+PIN KYPL+ +++    +   +   ++   YVML+G+NDS + A  L+K +   
Sbjct: 221 QRSELMPINNKYPLDQVMNVLDQHIHETGR-KVYIAYVMLRGVNDSEKHAEALVKRILNN 279

Query: 309 ---IPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
                  +NLI +NP  G    Y  + ++ + TF   +K +     IR+  G +I AACG
Sbjct: 280 RYPHLYHVNLIRYNPTVGTPENYGQTIEEKLQTFYRVVKSARIPVTIRSQFGREIDAACG 339

Query: 364 QLKSLSKRIPK 374
           QL    +   +
Sbjct: 340 QLYGQYQAKKR 350


>gi|301059158|ref|ZP_07200099.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
 gi|300446738|gb|EFK10562.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
          Length = 345

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 111/363 (30%), Positives = 171/363 (47%), Gaps = 31/363 (8%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF--QGMSDISQEVRHLLNQ 66
           L+ +  E L  A+                +++  Y     D         SQ +R  L Q
Sbjct: 4   LLELTYENLLAAVSD---RYGKGSFLAQTLYREFYKDLKPDAWRAEAIRNSQGLRDRLRQ 60

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
            +    P  V ++I  DG  K++             +E+V +P ++  T+C+SSQVGC +
Sbjct: 61  DWCFE-PGRVKDEIHEDGLIKFVTELVD-----GHRVESVILPLRTHQTVCISSQVGCRM 114

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L R+L+ EE++ QV  AR                    GR I N+V MG
Sbjct: 115 GCRFCETGKLGLARSLSVEEMVGQVYQARH-----------------EFGRSIRNVVFMG 157

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--MLAISLH 244
           MGEP  NF+NV +++ + SD  GL  ++RRITLST+G +  I ++         L +SL+
Sbjct: 158 MGEPFDNFENVIQAVRVMSDQRGLDIAQRRITLSTAGRIDGIRKLAALNMPSLNLTVSLN 217

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A ++ LR  L+P++ K  L +L      YP       +   YV++  +ND       L +
Sbjct: 218 APNDQLRQRLMPLHDKGSLALLQKTLMAYPLKKGKV-LNVAYVLISHVNDQGEHVQQLAE 276

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
            LK + A++NLIP+N      +    Q D   F E +   G +   R PRG +++AACGQ
Sbjct: 277 WLKPLRARVNLIPYNSIKDSLFQPPRQGDTDLFREKLIELGVNVQKRIPRGRELMAACGQ 336

Query: 365 LKS 367
           L +
Sbjct: 337 LGA 339


>gi|293400143|ref|ZP_06644289.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306543|gb|EFE47786.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 329

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 108/327 (33%), Positives = 164/327 (50%), Gaps = 32/327 (9%)

Query: 55  DISQEVRHLL-NQHFSIIYPEIVDEKI--SCDGTRKWLLRFPARCIGGPVEIETVYIPEK 111
           D ++ +   L  Q F      I  +K+  S D T K++             IETV+I  +
Sbjct: 31  DKARALYAKLYKQPFHKKNLSISTKKVYKSSD-TEKYVYELKDNRY-----IETVFIKRR 84

Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
             GT+CVS+QVGCS+ C FC +G    VRNLT  EI+ QV+L R                
Sbjct: 85  DGGTVCVSTQVGCSVGCIFCESGRNGFVRNLTPSEIVQQVILIRQ--------------- 129

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
                 K++ IV MGMGEPL N+DN+  ++ I  D  GL+F    IT+ST G V  + ++
Sbjct: 130 ------KVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITISTVGPVNQLKKL 183

Query: 232 GEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            EE + + L ISLHA +  +RN ++P    Y +E ++     Y    N  ++ F Y++L 
Sbjct: 184 REEHLKIQLTISLHAATQAVRNCIIPHMHMYAIEDVVKQALSYSQRHNR-KVVFAYLLLP 242

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           GIND   D   L K  KG    IN++ +NP    +     ++++V F   ++++G    +
Sbjct: 243 GINDRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTM 302

Query: 351 RTPRGLDILAACGQLKSLSKRIPKVPR 377
           R   G +I AACGQL +   +  K  +
Sbjct: 303 RVSHGREIKAACGQLANTYNKAKKQQK 329


>gi|254442339|ref|ZP_05055815.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
 gi|198256647|gb|EDY80955.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
          Length = 342

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 172/371 (46%), Gaps = 37/371 (9%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ--EVRHL 63
           K S+  +  ++LE+ L   G   R +R     +++        +F  + ++         
Sbjct: 2   KTSIYDI--KKLEKHLRHNGFGARELRRTYRMLFR--------EFTPLENLGWDDAFTAN 51

Query: 64  LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121
             + F   Y  +V    S  DG  K L   P        +IETV +     R ++CVSSQ
Sbjct: 52  FKEQFETSYLTLVSRIDSKIDGATKLLFETPD-----GKKIETVILRIATGRTSICVSSQ 106

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+  C FC TG     RNL +EEIL QV+ A              G ++ S  R + N
Sbjct: 107 VGCTEKCRFCATGELGFFRNLKSEEILDQVVQA--------------GRILASEDRSLRN 152

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240
           IV MGMGEPL N+DN+  ++          F  +RIT+S+ G    I +  +    V LA
Sbjct: 153 IVFMGMGEPLRNYDNLVAAMDQLLSEHVFKFVPKRITVSSLGIPELIVKFAQRFPQVSLA 212

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SL+  ++  R+ ++PIN +YP+  L         +     +  EY+M K +NDS  DA 
Sbjct: 213 LSLNGSNDAARSEVMPINNRYPMADLRSMLEQLETIREGI-VMIEYIMFKDLNDSVEDAA 271

Query: 301 NLIKILKGIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
            +   L+G+   INLIP+NP       +L S  + I  F   ++  GY    R   G DI
Sbjct: 272 KVAAFLRGLAVHINLIPYNPDYSLNKSFLPSSIETIEAFKNHLQSEGYKVTRRFSLGQDI 331

Query: 359 LAACGQLKSLS 369
            AACGQL + S
Sbjct: 332 AAACGQLANKS 342


>gi|317501363|ref|ZP_07959565.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA]
 gi|325263263|ref|ZP_08129998.1| radical SAM enzyme, Cfr family [Clostridium sp. D5]
 gi|328948778|ref|YP_004366115.1| radical SAM protein [Treponema succinifaciens DSM 2489]
 gi|316897227|gb|EFV19296.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA]
 gi|324031656|gb|EGB92936.1| radical SAM enzyme, Cfr family [Clostridium sp. D5]
 gi|328449102|gb|AEB14818.1| radical SAM enzyme, Cfr family [Treponema succinifaciens DSM 2489]
          Length = 329

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 109/369 (29%), Positives = 171/369 (46%), Gaps = 57/369 (15%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
            G   +E+ E +          + R   ++  +Y +                    ++ S
Sbjct: 17  YGFTYKEMSEVI-------GEDKARA--LYTELYKQPFH----------------KKNLS 51

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           I   ++     S D T K++             IETV+I  +  GT+CVS+QVGCS+ C 
Sbjct: 52  ISTKKVYK---SSD-TEKYVYELKDNRY-----IETVFIKRRDGGTVCVSTQVGCSVGCI 102

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +G    VRNLT  EI+ QV+L R                      K++ IV MGMGE
Sbjct: 103 FCESGRNGFVRNLTPSEIVQQVILIRQ---------------------KVNRIVFMGMGE 141

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           PL N+DN+  ++ I  D  GL+F    IT+ST G V  + ++ EE + + L ISLHA + 
Sbjct: 142 PLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVNQLKKLREEHLKIQLTISLHAATQ 201

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
             RN ++P    Y +E ++     Y    N  ++ F Y++L GIND   D   L K  KG
Sbjct: 202 AARNCIIPHMHMYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGINDRSSDIRQLAKWFKG 260

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
               IN++ +NP    +     ++++V F   ++++G    +R   G +I AACGQL + 
Sbjct: 261 KNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRVSHGREIKAACGQLANT 320

Query: 369 SKRIPKVPR 377
             +  K  +
Sbjct: 321 YNKAKKQQK 329


>gi|330999065|ref|ZP_08322788.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|329575586|gb|EGG57120.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 302

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/320 (33%), Positives = 163/320 (50%), Gaps = 31/320 (9%)

Query: 61  RHLLNQHFSIIYPEIVDEKI--SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
           R+ +N HF+     I  +K+  S D T K++             IETV+I  +  GT+CV
Sbjct: 11  RNYINSHFTKKNLSISTKKVYKSSD-TEKYVYELKDNRY-----IETVFIKRRDGGTVCV 64

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           S+QVGC + C FC +G    VRNLT  EI+ QV+L R                      K
Sbjct: 65  STQVGCPVGCIFCESGRNGFVRNLTPSEIVQQVILIRQ---------------------K 103

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237
           ++ IV MGMGEPL N+DN+  ++ I  D  GL+F    IT+ST G V  + ++ EE + +
Sbjct: 104 VNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVKQLKKLREEHLKI 163

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            L ISLHA +   RN ++P   KY +E ++     Y    N  ++ F Y++L GIND   
Sbjct: 164 QLTISLHAATQAARNCIIPHMHKYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGINDRSS 222

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
           D   L K  KG    IN++ +NP    +     ++++V F   ++++G    +R   G +
Sbjct: 223 DIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRVSHGRE 282

Query: 358 ILAACGQLKSLSKRIPKVPR 377
           I AACGQL +   +  K  +
Sbjct: 283 IKAACGQLANTYNKAKKQQK 302


>gi|219129697|ref|XP_002185019.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403514|gb|EEC43466.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 387

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 108/348 (31%), Positives = 156/348 (44%), Gaps = 44/348 (12%)

Query: 54  SDISQEVRHLLNQ-----HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVY 107
           S + ++    L +      F  +   I   + S D  T K  ++     +     +E+V 
Sbjct: 60  SQLPRKFLDFLQEDAQSSGFVTVTSRIEFAQTSADRSTTKLAVQLHDGQL-----VESVL 114

Query: 108 IPE-------KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           +          SR +LCVSSQ GC++ C+FC TGT  L  NLTA EIL Q+         
Sbjct: 115 MRYVSTATSNNSRASLCVSSQCGCAMGCTFCATGTMGLSGNLTAGEILEQI--------- 165

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
                             + N+V MGMGEPL N+ NV ++     D    + +  R+T+S
Sbjct: 166 -----------PLPKLDLVRNVVFMGMGEPLDNYSNVVEACRALIDRQRWNLAHGRVTVS 214

Query: 221 TSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY--PGLS 277
           T G V  I ++  E+  V LA+SLHA +   R  +VP  + YPLE LIDA   +    L 
Sbjct: 215 TVGLVSQIRKLTAELPEVSLALSLHAPNQQDRQAIVPTAKHYPLEDLIDALDQHMMAYLQ 274

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVT 336
                  EYVML+G   +   A  L K+ +     +NLIP+N     +   C  ++ +  
Sbjct: 275 KRTNPMIEYVMLEGPTSTLECAHQLGKLCENRHLVVNLIPYNQTNVRDVLRCPSREHMEE 334

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQITG 384
           F E +   G    IR   G DI +ACGQL +L  R  K  + E    G
Sbjct: 335 FREIVASYGSFCTIRKTMGADIDSACGQLITL--RENKQSQNEHNAKG 380


>gi|219113956|ref|XP_002176161.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402902|gb|EEC42868.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 471

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 104/334 (31%), Positives = 152/334 (45%), Gaps = 42/334 (12%)

Query: 54  SDISQEVRHLLNQ-----HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVY 107
           S + ++    L +      F  +   I   + S D  T K  ++     +     +E+V 
Sbjct: 60  SQLPRKFLDFLQEDAQSSGFVTVTSRIEFAQTSADRSTTKLAVQLHDGQL-----VESVL 114

Query: 108 IPE-------KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           +          SR +LCVSSQ GC++ C+FC TGT  L  NLTA EIL Q+         
Sbjct: 115 MRYVSTATSNNSRASLCVSSQCGCAMGCTFCATGTMGLSGNLTAGEILEQI--------- 165

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
                             + N+V MGMGEPL N+ NV ++     D    + +  R+T+S
Sbjct: 166 -----------PLPKLDLVRNVVFMGMGEPLDNYSNVVEACRALIDRQRWNLAHGRVTVS 214

Query: 221 TSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY--PGLS 277
           T G V  I ++  E+  V LA+SLHA +   R  +VP  + YPLE LIDA   +    L 
Sbjct: 215 TVGLVSQIRKLTAELPEVSLALSLHAPNQQDRQAIVPTAKHYPLEDLIDALDQHMMAYLQ 274

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVT 336
                  EYVML+G   +   A  L K+ +     +NLIP+N     +   C  ++ +  
Sbjct: 275 KRTNPMIEYVMLEGPTSTLECAHQLGKLCENRHLVVNLIPYNQTNVRDVLRCPSREHMEE 334

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           F E +   G    IR   G DI +ACGQL +L +
Sbjct: 335 FREIVVSYGSFCTIRKTMGADIDSACGQLITLRE 368


>gi|222624395|gb|EEE58527.1| hypothetical protein OsJ_09817 [Oryza sativa Japonica Group]
          Length = 356

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 101/359 (28%), Positives = 158/359 (44%), Gaps = 49/359 (13%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVR-GIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
           +       GI    + +    IWK++       D   +  +      LL Q F      +
Sbjct: 27  IRAEFAAAGISPHFIPL----IWKYVLQNPRCGDLDAVPSLPAAAYALLRQKFQPTTSTL 82

Query: 76  VDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVSS 120
                S D  T K L+R           +E V +   +R               TLCVSS
Sbjct: 83  TTAAESKDRTTTKLLIRL-----KNGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSS 137

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC + C FC TGT     NL++ EI+ Q++ A                       +I 
Sbjct: 138 QVGCKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRYS-------------------QIR 178

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VML 239
           N+V MGMGEPL N+  + +++ +         S +RIT+ST G + +I +   ++  + L
Sbjct: 179 NVVFMGMGEPLNNYTALVEAIQVLI-GSPFQLSPKRITVSTVGIIHSINKFNNDLPNINL 237

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA   D+R  ++P  R +PL  L++A + Y   S  + I  EY+ML G+ND  + A
Sbjct: 238 AVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNES-KQTIFIEYIMLDGVNDQEQHA 296

Query: 300 LNLIKILKGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGL 356
             L K+L+   A +NLIPFNP      +  S + ++  F + ++      + IR   G 
Sbjct: 297 HQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYNIRTTIRQQMGQ 355


>gi|330950791|gb|EGH51051.1| radical SAM protein [Pseudomonas syringae Cit 7]
          Length = 220

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 103/232 (44%), Positives = 138/232 (59%), Gaps = 19/232 (8%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 7   KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 63  ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           L CSFC TG Q    NLTA E++ QV +A    G  P   D          R I+N+VMM
Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
           GMGEPL NFDNV  ++ +  D +G   SKRR+TLSTSG VP I  + + I V
Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDV 219


>gi|226945006|ref|YP_002800079.1| ribosomal RNA large subunit methyltransferase N [Azotobacter
           vinelandii DJ]
 gi|226719933|gb|ACO79104.1| Fe-S cluster redox enzyme, radical SAM family [Azotobacter
           vinelandii DJ]
          Length = 344

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/374 (27%), Positives = 171/374 (45%), Gaps = 34/374 (9%)

Query: 12  MMREELEEALLKIGIPQRHV-RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ-HFS 69
           M   +  + L  +G    H+ R+  + +  W    G R  Q    +   VR  + + H +
Sbjct: 1   MKIADFHQRLADLGAKSPHIGRIDRAWLHGWPLDTGTRQQQARDFLPLGVREAMPELHAT 60

Query: 70  IIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           +     +  E  + DG+ + L+       G    +E+V +P   R  LCVSSQVGC++ C
Sbjct: 61  VAGLARLRSEHPAADGSARLLVEL-----GDGQMVESVLLP---RDGLCVSSQVGCAVGC 112

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG   L+R L + EI+ QV LAR                     R +  +V MGMG
Sbjct: 113 VFCMTGRSGLLRQLGSAEIVAQVALARRF-------------------RPVKKVVFMGMG 153

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247
           EP  N DNV +++ +   + G     + +  ST G      R+ +  +   LA+SLH+  
Sbjct: 154 EPAHNLDNVLEAIDLLGTAGG--IGHKNLVFSTVGDPRVFERLPQGRVKPALALSLHSSD 211

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P   +   + L++    Y   +    I +++ +L+GINDS  +   ++++L+
Sbjct: 212 AGLRRRLLPHAPRLDPQELVELAEAYARRT-GYPIQYQWTLLEGINDSLEEMDGILRLLR 270

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  A +NLIP+N     +Y   D + IV     +   G  + +R   G DI   CGQL++
Sbjct: 271 GKYAVMNLIPYNSLEADDYRRPDGERIVGLVRYLHGRGVLTKVRNSAGQDIDGGCGQLRA 330

Query: 368 LSKRIPKVPRQEMQ 381
            + +  +     M+
Sbjct: 331 RAMQPARSRPSRMR 344


>gi|91977329|ref|YP_569988.1| hypothetical protein RPD_2859 [Rhodopseudomonas palustris BisB5]
 gi|123721790|sp|Q136A2|Y2859_RHOPS RecName: Full=Probable RNA methyltransferase RPD_2859
 gi|91683785|gb|ABE40087.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 359

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 146/282 (51%), Gaps = 28/282 (9%)

Query: 85  TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
           + K L             +E+V I      T C+SSQVGC+  C FC +G   L+RNL A
Sbjct: 85  SEKMLFGLHD-----GYAVESVLIRRFDGHTACISSQVGCAFACRFCASGQAGLMRNLEA 139

Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
            EI+ QV+                      +G K++ IV MG+GEPL N+  V K++ I 
Sbjct: 140 GEIVEQVV---------------------RLGPKVNRIVFMGIGEPLNNYQQVLKAIRIL 178

Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPL 263
            D  G++F    ITLST G    + ++ EE + + L ISLHA + ++R+ L+P  RK+PL
Sbjct: 179 RDRQGMNFPTTGITLSTIGIPKALKQLREEHLAINLTISLHATTQEVRDRLIPGARKHPL 238

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
             +++    +    N   +TF Y++L GINDS  DA  L  +L+  PA++NL+ +NP  G
Sbjct: 239 GEVVERACAWARRHNR-PVTFAYLVLPGINDSIADARRLAAMLRDSPARVNLMRWNPVDG 297

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                +  + +  F   ++ +     +R  +G DI AACGQL
Sbjct: 298 VGLQRTPDRSLAHFRTTLENALVPVVVRDTQGRDISAACGQL 339


>gi|323453410|gb|EGB09282.1| hypothetical protein AURANDRAFT_12147 [Aureococcus anophagefferens]
          Length = 316

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 102/336 (30%), Positives = 151/336 (44%), Gaps = 53/336 (15%)

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEK----SRG 114
            +  +  +FS    ++V    S DG T K ++           ++ETV +       SR 
Sbjct: 3   FKEAVAANFSARSVDLVSRHDSSDGSTSKLVVGLRC-----GKKVETVVMRHGTLRSSRV 57

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           T+CVSSQVGC++ CSFC TGT  +  +LT  EI+ QVLLA+ + G               
Sbjct: 58  TVCVSSQVGCAMRCSFCATGTMGMQGDLTRGEIVEQVLLAKGVDG--------------- 102

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-E 233
              ++ N+V MGMGEPL N+D V  +     D   L+    R+T+ST G V  I  +  +
Sbjct: 103 ---RLRNVVFMGMGEPLNNYDEVLGACRCLLDDRWLALGGGRVTISTVGVVDRIRSLAAD 159

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYP-----------LEMLIDACRHYPGLSNARR- 281
           E    LA+SLHA + D R  ++P  ++Y            +   +               
Sbjct: 160 EPRANLALSLHAPTQDQRVAIMPAAKRYDLDDLLDALDAYVAEKLRELERRGSRKRRNDE 219

Query: 282 ----ITFEYVMLKGINDSPRDALNLIKILK--------GIPAKINLIPFNPWPGCEYLCS 329
               I  EY++L G+NDS  DA  L K+          G  A +NLI +NP P   Y   
Sbjct: 220 KQPLIMVEYILLGGVNDSVADADALGKLFSRAGAAPRFGGRAMVNLIAYNPTPDLPYDRP 279

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
               +  F + ++  G  + +R   G D+  ACGQL
Sbjct: 280 SDAAVAAFQKAVQAHGVLTCVRITMGSDVAGACGQL 315


>gi|145352684|ref|XP_001420668.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580903|gb|ABO98961.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 254

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 104/244 (42%), Positives = 148/244 (60%), Gaps = 20/244 (8%)

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FCYT    L +NL+A +I+ QV+ AR ++G                  ++SN+V M
Sbjct: 1   MNCQFCYTAKMGLRKNLSAAQIVEQVVQARRMVG----------------ASEVSNVVFM 44

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
           GMGEPL N D V K++SI  D  GL FS+ ++T+STSG VP + R   E    LA+SL+A
Sbjct: 45  GMGEPLHNVDEVLKAVSILLDPKGLGFSRNKVTVSTSGLVPQMERFLRESEASLAVSLNA 104

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSPRDALN 301
            ++ +RN ++PINRKY LEML+   R          + R++ FEY+ML+G+NDS  DA  
Sbjct: 105 TTDYIRNWIMPINRKYNLEMLLGLLRREFPRQSLGRHQRQVFFEYIMLEGVNDSDEDADR 164

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L++I + IP KINLI FN   G E+ CSDQ+ I  F + +  +G +  IR  RG + ++A
Sbjct: 165 LVEIARDIPCKINLIYFNTHDGSEFKCSDQERINAFRQRVSDAGVTCTIRQSRGDEEMSA 224

Query: 362 CGQL 365
           CGQL
Sbjct: 225 CGQL 228


>gi|255074899|ref|XP_002501124.1| predicted protein [Micromonas sp. RCC299]
 gi|226516387|gb|ACO62382.1| predicted protein [Micromonas sp. RCC299]
          Length = 368

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 114/393 (29%), Positives = 179/393 (45%), Gaps = 67/393 (17%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           +  +E+E      GI +  +R+     ++ ++ RG   F+   D+S     LL  +F++ 
Sbjct: 4   LDIDEVERFARDRGIKKSSLRL----CYRELFRRGKSTFENAPDVSARDMKLLRDNFTVC 59

Query: 72  YPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKS------------------ 112
             E+V+ K + DG+  K ++R     +     +ETV I                      
Sbjct: 60  TSEVVETKTTEDGSGAKMVVRLHDGKL-----VETVVIGHSRSVDDGDGDETRGDGEDAD 114

Query: 113 ----------RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
                     R T+CVSSQVGC++ C+FC TGT  L+ NLTA EI  QV  AR+L G   
Sbjct: 115 VSDGAKNRVFRNTVCVSSQVGCAMGCTFCETGTLGLMANLTAGEICEQVWHARNLCGSTG 174

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                           + N+VMMGMGEPL N++ V  +L   +        +R +T+ST 
Sbjct: 175 ----------------VRNVVMMGMGEPLDNYEEVLIALRAMTHQAVFDMRQRSVTVSTV 218

Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINR--KYPLEMLIDACRHYPGLSNA 279
           G   +I R+ ++   V LA+SLHA + DLR  L+P      + L  L ++ R++   S  
Sbjct: 219 GVPASIRRLADDAPNVGLALSLHAPTQDLRATLLPSAAGTSHTLGRLTESLRYHRQKSGR 278

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP---GCEYLCSDQKDIVT 336
                EY+++ G+NDSP  A  L ++       +NLIP+NP        Y       +  
Sbjct: 279 G-AMIEYIVIDGVNDSPTHARELGEL---SGYFVNLIPYNPTDVGGTHGYRSPADDALER 334

Query: 337 FSECI-KRSGYSSPIRTP--RGLDILAACGQLK 366
            +  +    G  + +R    RG ++  ACGQL 
Sbjct: 335 MASILGDEFGVKAKVRWSTRRGREVDGACGQLA 367


>gi|32474560|ref|NP_867554.1| Fe-S-cluster redox enzyme [Rhodopirellula baltica SH 1]
 gi|81660696|sp|Q7UPG1|Y6963_RHOBA RecName: Full=Probable RNA methyltransferase RB6963
 gi|32445099|emb|CAD75101.1| conserved hypothetical protein-putative Fe-S-cluster redox enzyme
           [Rhodopirellula baltica SH 1]
          Length = 379

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 98/321 (30%), Positives = 154/321 (47%), Gaps = 24/321 (7%)

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122
            +   +   ++     S  DG  K L    +  +     IE+V +     R TLCVSSQ+
Sbjct: 54  AEAIELHSLKLYQRMDSEIDGATKLLFETESGML-----IESVILRIATGRTTLCVSSQI 108

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+  C FC TG   + +NL  EEIL QV+ A              G ++    R++SNI
Sbjct: 109 GCAAACDFCATGKMGIAKNLATEEILDQVVQA--------------GQILRGEDRRLSNI 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAI 241
           V MGMGEPL N  NV +++ + +     + S   + +ST G    + R+ +    + LA+
Sbjct: 155 VFMGMGEPLHNEVNVTEAIELLTAPDHFARSPSTVLVSTVGVPAGMLRLAKRFPNLNLAL 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+     R  ++P+ +K  L  L DA      + +      EY+ML+ +NDS +DA  
Sbjct: 215 SLHSADQTTREKIIPLGKKASLAQLHDAIHEIQTIQDRE-FMIEYLMLRDVNDSAKDADR 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           LI  +  +   +NLIP+N      +   S +  I +F++ +K SG  + +R   G DI A
Sbjct: 274 LIDWIGDLRVHVNLIPYNTIEASPHLHASSRPVIESFADILKASGLKTTVRYSLGNDIEA 333

Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381
           ACGQL     R   +  +  +
Sbjct: 334 ACGQLIRQENRQRAMQARRTE 354


>gi|115377656|ref|ZP_01464850.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310824447|ref|YP_003956805.1| ribosomal RNA large subunit methyltransferase n [Stigmatella
           aurantiaca DW4/3-1]
 gi|115365318|gb|EAU64359.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397519|gb|ADO74978.1| Ribosomal RNA large subunit methyltransferase N [Stigmatella
           aurantiaca DW4/3-1]
          Length = 361

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 163/365 (44%), Gaps = 33/365 (9%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR---HLL 64
           +L  +   EL EAL  +      VR    +++  ++  G R  + +    Q  R     L
Sbjct: 2   NLKQLSLPELGEALAPLAPTPTAVR----KVFAAVFAHGARTVEEVCAAPQVPRRVAEHL 57

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVG 123
             H  +   E+V+ + + DG  K+L   P         +E V IP    +  +CVSSQVG
Sbjct: 58  RAHGQMPRLEVVERRQAEDGFVKYLFGSPL-----GGRVEAVRIPIFDEKYIVCVSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C FC TG     RNL   EIL QV+  R                     R +  +V
Sbjct: 113 CALACDFCMTGKLGFQRNLKTWEILDQVMQVRE-----------------EADRPVRGVV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242
            MGMGEPL N+    ++  I S+  G + S   IT ST+G VP I R   E     LA S
Sbjct: 156 FMGMGEPLLNYAETIRAAQILSNPAGFAISGTAITFSTAGMVPAIRRYTSEGHPYRLAFS 215

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           + +   + R  ++PI + +PL  L++A R Y  +    R    YV + G N    DA  L
Sbjct: 216 VTSAIPEKRLKVLPIEKGHPLPELVEAIREYTQVR-RERAMIAYVAISGFNLGREDAQAL 274

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
               +GIP K++LI     P  +YL    +++  F + ++        R   G DI AAC
Sbjct: 275 KDTFEGIPIKVDLIDV-TDPTGKYLPPSAEELKAFRDHLQILKAPIARRYSGGKDIGAAC 333

Query: 363 GQLKS 367
           G L++
Sbjct: 334 GTLEA 338


>gi|219558900|ref|ZP_03537976.1| hypothetical protein MtubT1_16977 [Mycobacterium tuberculosis T17]
          Length = 238

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 90/250 (36%), Positives = 133/250 (53%), Gaps = 20/250 (8%)

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C FC TG   L RNL+  EIL QV    + L D               G ++SN+V 
Sbjct: 1   GMACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVF 47

Query: 185 MGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241
           MGMGEPL N+  V  ++   +     G   S R +T+ST G  P I  + +  +GV LA+
Sbjct: 48  MGMGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLAL 107

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  + LR+ LVP+N ++ +   +DA R+Y  ++   R++ EY +++ +ND P  A  
Sbjct: 108 SLHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSIEYALIRDVNDQPWRADL 166

Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
           L K L    G  A +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I
Sbjct: 167 LGKRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREI 226

Query: 359 LAACGQLKSL 368
            AACGQL ++
Sbjct: 227 SAACGQLAAV 236


>gi|67592602|ref|XP_665654.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54656439|gb|EAL35423.1| hypothetical protein Chro.40137 [Cryptosporidium hominis]
          Length = 600

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 116/492 (23%), Positives = 181/492 (36%), Gaps = 155/492 (31%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             +KK S+     + L +AL   G+     R+    IW+ I  +GI+D   + DI +   
Sbjct: 7   TDIKKHSIFD--YKSLTKALDDAGV----KRIHAYTIWRNIVQKGIKDMSEIKDIPKAAY 60

Query: 62  HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKS-------- 112
            ++N+ FSI+  ++++ + S DG T K + R          EIE V +            
Sbjct: 61  KIINEQFSILNIQLINSQTSKDGNTTKIIFRLQD-----SHEIEAVIMRYGDDQVNENTN 115

Query: 113 -------------------------RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
                                    R ++CVSSQ+GC + C FC TG+  L  +L + EI
Sbjct: 116 ICNSNSNNNNNDSNQQEISTSSKYKRISICVSSQIGCRMGCMFCATGSMGLRGSLLSGEI 175

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
           L Q+   +++L +                  + N+V MGMGEPL N+D V  S+ +  D 
Sbjct: 176 LQQLYYIKNILKE-----------------PVRNVVFMGMGEPLENYDEVIDSIRLMVDP 218

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEML 266
              S S   I +ST G   NI  + +++  V L +SLHA +  LR  +VPI R Y +  L
Sbjct: 219 RIFSLSSGHILVSTVGIPSNIVNLADDLPGVGLCLSLHAPNQSLRERIVPIARLYKISDL 278

Query: 267 IDACRHYPGLS-----------------------------------NARRITFEYVMLKG 291
           + +   +   +                                     + I  EY MLK 
Sbjct: 279 MRSLDIFIFKTIINKCYKNLLDDRNKDHIKDNMNYDDILISNKLLYGHKMIIIEYTMLKD 338

Query: 292 INDSPRDALNLIKILKGIP------------------------------------AKI-- 313
           +NDS   A+ L  +LK  P                                    + I  
Sbjct: 339 VNDSEDHAVELANLLKNTPISKNIIEEIIDNRDDSVKMNINNYMSDNKIINKNLKSHIAS 398

Query: 314 ------------------NLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
                             NLIP+N       +    ++ I  F++ +        +R   
Sbjct: 399 TIFKELSKDFNRTNFAIVNLIPYNKTNTSTRFSTPSKEIITKFAKVLIDLNIFVTVRRKM 458

Query: 355 GLDILAACGQLK 366
           G  I  ACGQL 
Sbjct: 459 GDGIFGACGQLA 470


>gi|66357070|ref|XP_625713.1| conserved protein with transmembrane region at C-terminus
           [Cryptosporidium parvum Iowa II]
 gi|46226740|gb|EAK87719.1| conserved protein with transmembrane region at C-terminus
           [Cryptosporidium parvum Iowa II]
          Length = 602

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 114/496 (22%), Positives = 182/496 (36%), Gaps = 154/496 (31%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             +KK S+     + L +AL   G+     R+    IW+ I  +GI++   + DI +   
Sbjct: 10  TDIKKHSIFD--YKSLTKALDDAGV----KRIHAYTIWRNIVQKGIKNMSEIKDIPKAAY 63

Query: 62  HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKS-------- 112
            ++N+ FSI+  ++++ + S DG T K + R          EIE V +            
Sbjct: 64  KIINEQFSILNIQLINSQTSKDGNTTKIIFRLQD-----SHEIEAVIMRYGDDQVNENTN 118

Query: 113 -------------------------RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
                                    R ++CVSSQ+GC + C FC TG+  L  +L + EI
Sbjct: 119 ICNSNSNNKNNDSNQQEISTSSKYKRISICVSSQIGCRMGCMFCATGSMGLRGSLLSGEI 178

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
           L Q+   +++L +                  + N+V MGMGEPL N+D V  S+ +  D 
Sbjct: 179 LQQLYYIKNILKE-----------------PVRNVVFMGMGEPLENYDEVIDSIRLMVDP 221

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEML 266
              S S   I +ST G   NI  + +++  V L +SLHA +  LR  ++PI R Y +  L
Sbjct: 222 RIFSLSSGHILVSTVGIPSNIINLADDLPGVGLCLSLHAPNQSLRERIIPIARLYKISDL 281

Query: 267 IDACRHYPGLS-----------------------------------NARRITFEYVMLKG 291
           + +   +   +                                     + I  EY MLK 
Sbjct: 282 MRSLDIFIFKTIINKCYKNLLDDRNKDHIKDNMNYDDILISNKLLYGHKMIIIEYTMLKD 341

Query: 292 INDSPRDALNLIKILKGIP-----------------------------------AKI--- 313
           +NDS   A+ L  +LK  P                                   + I   
Sbjct: 342 VNDSEDHAVELANLLKNTPISKNIIEEIIDNRDDSVKMNINYMSDNKIINKNFKSHIAST 401

Query: 314 -----------------NLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
                            NLIP+N       +    ++ I  F++ +        +R   G
Sbjct: 402 IFKELSKDFNRTNFAIVNLIPYNKTNTSTRFSTPSKEIITKFAKVLIDLNIFVTVRRKMG 461

Query: 356 LDILAACGQLKSLSKR 371
             I  ACGQL     +
Sbjct: 462 DGIFGACGQLALKQAK 477


>gi|266624063|ref|ZP_06116998.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
 gi|288864119|gb|EFC96417.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
          Length = 235

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 85/238 (35%), Positives = 138/238 (57%), Gaps = 19/238 (7%)

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +    L RNL   E+L Q+   + L G+                 ++SN+V+MG GE
Sbjct: 1   FCASTLDGLERNLRPAEMLDQIYRIQYLTGE-----------------RVSNVVIMGSGE 43

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           P+ N+D+V K + + +D  GL+ S+R +TLST G VP I ++ +E + + LA+SLHA ++
Sbjct: 44  PMDNYDHVVKFIRLLTDEHGLNVSQRNVTLSTCGIVPGILKLADEGLAITLALSLHAPND 103

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
           ++R  L+P+ + Y L  +++AC  Y   +   R+TFEY ++ G+ND+  +A  L  ++K 
Sbjct: 104 EVRKTLMPVAKSYKLNDVLEACHTYFEKTGR-RLTFEYSLVAGVNDNLEEAAALAALIKD 162

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
               +NLIP NP    +Y+ SD+K I  F   ++++G +  IR   G DI  ACGQL+
Sbjct: 163 QQGHVNLIPVNPIKERDYVQSDRKAIEAFKNLLEKNGINVTIRREMGRDIHGACGQLR 220


>gi|307824047|ref|ZP_07654274.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
 gi|307734831|gb|EFO05681.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
          Length = 233

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 107/245 (43%), Positives = 140/245 (57%), Gaps = 13/245 (5%)

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC+TG Q L RNLT  EI+ Q L A   L      E            +I NIV M
Sbjct: 1   MNCSFCFTGKQGLKRNLTTSEIVGQFLQAWRWLAKNRPGE-----------ERILNIVFM 49

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
           G GEPL NFD VKK+  I     G S   +RIT+ST+G++P + R  +EI  V LA+SLH
Sbjct: 50  GQGEPLHNFDAVKKACEIFLSKHGTSIGVQRITISTAGYIPGLKRWSQEIPGVNLALSLH 109

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +   + RN L+PIN KYPL+ ++      P L+  + IT+EY+++K  ND+P DA  L  
Sbjct: 110 SPFEEKRNELIPINIKYPLDEVLATIDKIP-LNKKQFITYEYILIKDFNDTPDDAEKLGT 168

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           IL G  A INLIPFN +PG  Y   D   I  F E +      + IR+ +G D+LAACGQ
Sbjct: 169 ILAGKSAYINLIPFNSFPGSHYNRPDLDKIEKFKEVLDTFKIPTLIRSAKGDDVLAACGQ 228

Query: 365 LKSLS 369
           L S +
Sbjct: 229 LNSKN 233


>gi|325677606|ref|ZP_08157260.1| putative 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8]
 gi|324110698|gb|EGC04860.1| putative 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8]
          Length = 377

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 100/368 (27%), Positives = 160/368 (43%), Gaps = 57/368 (15%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
                +E+ + + +          R   ++K +Y  G+          +           
Sbjct: 20  YNYTFDEVAKCMGEE---------RAKSLFKTLYKSGVS--------PKN---------- 52

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
                I D  +  D T K+              IETV I  ++  T+CVS+ VGC + C 
Sbjct: 53  -QTMTIKDIYVGGD-TTKYAFELQD-----GYCIETVCIKRRTGNTVCVSTMVGCPVGCI 105

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC +G    +RNL+  EI+ Q++L +                      +++ IV MGMGE
Sbjct: 106 FCASGKNGFIRNLSPAEIVQQIVLLKE---------------------RVNRIVFMGMGE 144

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248
           PL N+DN+ KS+ I  D  GL+F    I +ST G V  + R+ EE + +   +SLHA   
Sbjct: 145 PLFNYDNLIKSIHILRDRNGLNFPTDGINVSTVGPVEQLKRLREEHLKIQFTLSLHATDQ 204

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
             RN+++P  +   +  +++A   Y    N  +IT  Y++  GIND   D   L K  +G
Sbjct: 205 ATRNMIMPHMKSNSIHSVVEAALSYSERHNR-KITIAYLLAPGINDRASDVRQLGKWFRG 263

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
               INL+ +N          +++ +V F   ++ +G    +R  RG  I AACGQL S 
Sbjct: 264 KNVLINLLQYNETACKRIKRPNKQQLVAFKIRLEEAGLEVKLRESRGNRIKAACGQLVSD 323

Query: 369 SKRIPKVP 376
             +    P
Sbjct: 324 YNKGNDAP 331


>gi|108761479|ref|YP_634582.1| ribosomal RNA large subunit methyltransferase N [Myxococcus xanthus
           DK 1622]
 gi|122980702|sp|Q1CYE1|Y6459_MYXXD RecName: Full=Probable RNA methyltransferase MXAN_6459
 gi|108465359|gb|ABF90544.1| radical SAM domain protein [Myxococcus xanthus DK 1622]
          Length = 358

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 162/367 (44%), Gaps = 33/367 (8%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMS---DISQEVRHLL 64
           +L  +  +ELE AL  +      VR    +++  ++  G +  + ++    + + V   L
Sbjct: 2   NLKSLSLQELEAALAPLSPSPAAVR----KVFAAVFAHGAQSVEDVASARQVPRRVGDHL 57

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVG 123
             H  +    IV+ + + DG  K+L       +GG   IE V IP    +  +CVSSQVG
Sbjct: 58  RAHAEMPKLAIVERRRADDGFVKYLF---DSPLGG--RIEAVRIPIFDEKYVICVSSQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C FC TG     RNL   EIL QVL  R                     R +  +V
Sbjct: 113 CALACDFCMTGKLGFKRNLQTWEILDQVLQVRE-----------------EADRPVRGVV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242
            MGMGEPL N+    ++  I     G S +   IT ST+G VP I R   E     LA S
Sbjct: 156 FMGMGEPLLNYKETLRAADILRHPAGFSIAGEAITFSTAGHVPAIRRYVREGHPYRLAFS 215

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           + +   + R  ++PI + +PL  LI A R Y  +    R    YV + G N    DA  L
Sbjct: 216 VTSAIAEKRAKVLPIEKTHPLPELIAAIREYSEVR-RERAMIAYVAISGFNMGREDAEAL 274

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
               +GI  K++LI     P  +YL    +++  F + ++        R   G +I AAC
Sbjct: 275 KVAFEGIRIKVDLIDV-TDPTGKYLPPTPEELSAFRDHLQILKSPVARRYSGGKEIGAAC 333

Query: 363 GQLKSLS 369
           G L +  
Sbjct: 334 GTLAATQ 340


>gi|87311004|ref|ZP_01093129.1| hypothetical protein DSM3645_15540 [Blastopirellula marina DSM
           3645]
 gi|87286294|gb|EAQ78203.1| hypothetical protein DSM3645_15540 [Blastopirellula marina DSM
           3645]
          Length = 361

 Score =  265 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 102/294 (34%), Positives = 144/294 (48%), Gaps = 24/294 (8%)

Query: 83  DGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
           DG  K L R     +     +E+V +     R  LCVSSQVGC+  C FC TG   + R+
Sbjct: 81  DGASKLLFRTDDGLL-----LESVILRVATGRTALCVSSQVGCAANCDFCATGKMGIARS 135

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           L+A +IL QV+ A  L              +   GRK+ NIV MGMGEP  N   V ++L
Sbjct: 136 LSAPQILDQVVQANQL--------------LKPEGRKVRNIVFMGMGEPFHNTAAVHETL 181

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK 260
                  G   S RR  +ST G    +     +   V LA+SLH+     R  ++P+  K
Sbjct: 182 EKLVSPHGFDQSPRRTLVSTVGLPSAMIAFARKFPKVNLALSLHSAIQSRRTEIIPLAAK 241

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           + L+ L  A      +   + I  EY+ML+GIND P D   L   L+G+P  INLIP+N 
Sbjct: 242 FDLKELRAALDQVAAV-QQQSIMIEYLMLRGINDGPEDRAALADYLRGLPVHINLIPYNR 300

Query: 321 WPGCEY-LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL-KSLSKRI 372
                +   + ++D   F   ++  GY+  IR   G D+ AACGQL +  ++RI
Sbjct: 301 VDAAPHLEGTSKEDREAFGAALRGEGYTVTIRYSLGADVDAACGQLVRRENRRI 354


>gi|327543394|gb|EGF29819.1| radical SAM domain protein [Rhodopirellula baltica WH47]
          Length = 379

 Score =  265 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 98/321 (30%), Positives = 154/321 (47%), Gaps = 24/321 (7%)

Query: 65  NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122
            +   +   ++     S  DG  K L    +  +     IE+V +     R TLCVSSQ+
Sbjct: 54  AEAIELHSLKLYQRMDSEIDGATKLLFETESGML-----IESVILRIATGRTTLCVSSQI 108

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+  C FC TG   + +NL  EEIL QV+ A              G ++    R++SNI
Sbjct: 109 GCAAACDFCATGKMGIAKNLATEEILDQVVQA--------------GQILRGEDRRLSNI 154

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAI 241
           V MGMGEPL N  NV +++ + + S   + S   + +ST G    + R+ +    + LA+
Sbjct: 155 VFMGMGEPLHNEVNVTEAIELLTASDHFARSPSTVLVSTVGVPAGMLRLAKRFPNLNLAL 214

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH+     R  ++P+ +K  L  L D       + +      EY+ML+ +NDS +DA  
Sbjct: 215 SLHSADQTTREKIIPLGKKASLTQLHDTILEIQTIQDRE-FMIEYLMLRDVNDSAKDADR 273

Query: 302 LIKILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           LI  +  +   +NLIP+N      +   S +  I +F++ +K SG  + +R   G DI A
Sbjct: 274 LIDWIGDLRVHVNLIPYNTIEASPHLHASSRPVIESFADILKASGLKTTVRYSLGNDIEA 333

Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381
           ACGQL     R   +  +  +
Sbjct: 334 ACGQLIRQENRQRAMQARRTE 354


>gi|152984959|ref|YP_001348813.1| hypothetical protein PSPA7_3453 [Pseudomonas aeruginosa PA7]
 gi|205829651|sp|A6V6X8|Y3453_PSEA7 RecName: Full=Probable RNA methyltransferase PSPA7_3453
 gi|150960117|gb|ABR82142.1| hypothetical protein PSPA7_3453 [Pseudomonas aeruginosa PA7]
          Length = 346

 Score =  265 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 104/384 (27%), Positives = 170/384 (44%), Gaps = 57/384 (14%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---------GIRDFQGMSDISQEVRH 62
           M  ++L + L  +G    H       +  W+  R            DF     +   VR 
Sbjct: 1   MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQRAEDF-----LPLSVRQ 52

Query: 63  ---LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
               + +        +  E  + DG+ + L+    R       +E+V +P   RG LCVS
Sbjct: 53  GLPRVAEELE-GIARLHSEHPASDGSSRLLVELADR-----QRVESVLLP---RGGLCVS 103

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           +QVGC++ C FC TG   L+R + + E++ QV+LAR                     R +
Sbjct: 104 TQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAV 144

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVM 238
             +V MGMGEP  N DNV +++ +     G     + +  ST G      R+ G+ +   
Sbjct: 145 KKVVFMGMGEPAHNLDNVLEAIDLLGTDGG--IGHKNLVFSTVGDPRVFERLPGQRVKPA 202

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLH+   +LR  L+P       E L++A   Y    +   I +++ +L+G+NDS  +
Sbjct: 203 LALSLHSTDAELRRRLLPKAPPLSPEELVEAGETYARQVD-YPIQYQWTLLEGVNDSLEE 261

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358
              ++++LKG  A +NLIP+N   G  Y     + IV     +   G  + +R   G DI
Sbjct: 262 MDGILRLLKGRFAVMNLIPYNSMDGDAYRRPRGERIVELVRYLHSRGVLTKVRNSAGQDI 321

Query: 359 LAACGQLKSLS-----KRIPKVPR 377
              CGQL++ +     +R  +V R
Sbjct: 322 DGGCGQLRARAEGAAPQRHIRVRR 345


>gi|219114843|ref|XP_002178217.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409952|gb|EEC49882.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 296

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 109/311 (35%), Positives = 151/311 (48%), Gaps = 35/311 (11%)

Query: 76  VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR--GTLCVSSQVGCSLTCSFCYT 133
           V E ++ DGT K LL+         +++ETV IP   R   TLCVSSQVGC   C+FC T
Sbjct: 1   VHESVAADGTTKLLLQLVD-----GLQVETVIIPWDERQRSTLCVSSQVGCRQACTFCLT 55

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   ++R+L+A+EIL+QVLLA+    +                  I NIV MGMGEP  N
Sbjct: 56  GRMGILRSLSADEILVQVLLAKRACRENNIY-------------PIDNIVFMGMGEPADN 102

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253
            D V ++ ++ +       + RRIT+ST    P+      +  V LA S+HA    +R  
Sbjct: 103 TDAVVRAANVLTHQQQFQLTPRRITISTVAPSPDAFLKLGKAPVALAWSVHASREAVRRE 162

Query: 254 LVPINRKYPLEMLIDA-CRHYPGLSNARRIT-FEYVMLKGINDSPRDALNLIKILK---- 307
           LVP  + Y +E L +   +     S + R T  E  +L  INDS  DA +L    +    
Sbjct: 163 LVPTTK-YTMEELREGYIKALLDRSRSMRTTMLEVTLLDKINDSLEDAEHLADFCQPLLK 221

Query: 308 ---GIPAKINLIPFNPW-----PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
              GI   +NLIP+N       P   Y     + I  F + +   G    +RT RG D  
Sbjct: 222 SVPGIKLVVNLIPWNDISASFGPASVYRKPTTERIGEFQKALIGRGILCYVRTTRGDDEG 281

Query: 360 AACGQLKSLSK 370
           AACGQL + +K
Sbjct: 282 AACGQLATTNK 292


>gi|327480837|gb|AEA84147.1| Fe-S-cluster redox protein [Pseudomonas stutzeri DSM 4166]
          Length = 342

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 107/372 (28%), Positives = 171/372 (45%), Gaps = 36/372 (9%)

Query: 12  MMREELEEALLKIGIPQRHV-RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFS 69
           M   + ++ L  IG   RH+ RM  + +       G R  Q    +   VR  L      
Sbjct: 1   MRIPDFQQRLADIGAKPRHIGRMTRAWLKGLPLDVGRRQQQAEDFLPLSVREGLPALSLE 60

Query: 70  IIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           I     +  E  + DG+ + L+       G    +E+V +P   R  LCVSSQVGC++ C
Sbjct: 61  IDALARLRSEHPAADGSARLLVEL-----GDGQMVESVLLP---RDGLCVSSQVGCAVGC 112

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG   L+R L + EI+ QV LAR                     R +  +V MGMG
Sbjct: 113 VFCMTGKSGLLRQLGSAEIVAQVALARRF-------------------RPVKKVVFMGMG 153

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EP  N DNV +++ +     G     + +  ST G +    R+ ++ +   LA+SLH+  
Sbjct: 154 EPAHNLDNVLEAIDLLGTEGG--IGHKNLVFSTVGDLRVFERLPQQRVKPALALSLHSTD 211

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P   +   E L++    Y   +    I +++ +LKGIND+  +   ++++LK
Sbjct: 212 GALRQALLPRAPQIAPEELVELGETYARAT-GFPIQYQWTLLKGINDNQEEMDGILRLLK 270

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  A +NLIP+N      Y   + + IV     +   G  + +R   G DI   CGQL++
Sbjct: 271 GKYAVMNLIPYNSLEDDAYQRPEGERIVQIVRYLHSRGVLTKVRNSAGQDIDGGCGQLRA 330

Query: 368 LSKRI--PKVPR 377
            ++++   + PR
Sbjct: 331 RAEQVLGRRRPR 342


>gi|219121243|ref|XP_002185849.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582698|gb|ACI65319.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 290

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 98/303 (32%), Positives = 140/303 (46%), Gaps = 27/303 (8%)

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIPE-KSRGTLCVSSQVGCSLTCSFCYTGTQKL 138
            S D T K LLR         +E+ETV IP    R TLCVSSQVGC   C+FC TG    
Sbjct: 4   QSRDSTTKLLLRLSD-----GLEVETVIIPWTGGRSTLCVSSQVGCRQGCTFCATGRMGK 58

Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198
           +R+L A+EIL Q+  AR +                     ++N+V MGMGEP  N D V 
Sbjct: 59  LRSLNADEILAQLFFARKICRQKNLP-------------PVTNVVFMGMGEPADNKDAVI 105

Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPIN 258
           ++  I +       S  ++T+ST    P+          +LA S+HA +++LR  LVP  
Sbjct: 106 RATDIMTTRELFQLSASKVTVSTVAPTPDSFLQFAHAHCVLAWSVHAANDELRRQLVPTT 165

Query: 259 RKYPLEMLIDACRHYPGLSNARRIT-FEYVMLKGINDSPRDALNLIKILK-------GIP 310
           +    E+            +  R T  E  ++ GINDS ++A  L+   +       G  
Sbjct: 166 KHAMTELRQGLIDTLLIRPHNFRTTMLEVALISGINDSEKEADELVDFAQVIIDEVPGCK 225

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
             +NLIPFN      Y     + +  F + ++  G  + IRT RG D  AACGQL +  +
Sbjct: 226 LVVNLIPFNDIGQNRYTKPSMEAVSVFQKRLREFGLVAHIRTTRGDDESAACGQLATNKQ 285

Query: 371 RIP 373
           +  
Sbjct: 286 KQR 288


>gi|146282579|ref|YP_001172732.1| Fe-S-cluster redox protein [Pseudomonas stutzeri A1501]
 gi|205829636|sp|A4VLN9|Y2231_PSEU5 RecName: Full=Probable RNA methyltransferase PST_2231
 gi|145570784|gb|ABP79890.1| predicted Fe-S-cluster redox enzyme [Pseudomonas stutzeri A1501]
          Length = 342

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 107/372 (28%), Positives = 170/372 (45%), Gaps = 36/372 (9%)

Query: 12  MMREELEEALLKIGIPQRHV-RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFS 69
           M   + ++ L  IG   RH+ RM  + +       G R  Q    +   VR  L      
Sbjct: 1   MRIPDFQQRLADIGAKPRHIGRMTRAWLKGLPLDVGRRQQQAEDFLPLSVREGLPALSLE 60

Query: 70  IIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
           I     +  E  + DG+ + L+       G    +E+V +P   R  LCVSSQVGC++ C
Sbjct: 61  IDALARLRSEHPAADGSARLLVEL-----GDGQMVESVLLP---RDGLCVSSQVGCAVGC 112

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FC TG   L+R L + EI+ QV LAR                     R +  +V MGMG
Sbjct: 113 VFCMTGKSGLLRQLGSAEIVAQVALARRF-------------------RPVKKVVFMGMG 153

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247
           EP  N DNV +++ +     G     + +  ST G +    R+ ++ +   LA+SLH+  
Sbjct: 154 EPAHNLDNVLEAIDLLGTEGG--IGHKNLVFSTVGDLRVFERLPQQRVKPALALSLHSTD 211

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
             LR  L+P   +   E L++    Y   +    I +++ +LKGIND+  +   ++++LK
Sbjct: 212 GALRQALLPRAPQIAPEELVELGETYARAT-GFPIQYQWTLLKGINDNQEEMDGILRLLK 270

Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
           G  A +NLIP+N      Y   + + IV     +   G  + +R   G DI   CGQL++
Sbjct: 271 GKYAVMNLIPYNSLEDDAYQRPEGERIVQIVRYLHSRGVLTKVRNSAGQDIDGGCGQLRA 330

Query: 368 LSKRI--PKVPR 377
            ++ +   + PR
Sbjct: 331 RAEHVLGRRRPR 342


>gi|224003013|ref|XP_002291178.1| hypothetical protein THAPSDRAFT_34735 [Thalassiosira pseudonana
           CCMP1335]
 gi|220972954|gb|EED91285.1| hypothetical protein THAPSDRAFT_34735 [Thalassiosira pseudonana
           CCMP1335]
          Length = 284

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/302 (32%), Positives = 150/302 (49%), Gaps = 26/302 (8%)

Query: 68  FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPE-KSRGTLCVSSQVGCS 125
           F+ +  ++   + S DG T K  +      +     +E+V +    SR TLCVSSQVGC+
Sbjct: 1   FATLTSKVQSYRTSKDGSTTKIAVELQDGHV-----VESVLMRHAGSRATLCVSSQVGCA 55

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TGT  +  NLT+ EIL Q++ A  +L                    I N+V M
Sbjct: 56  MGCTFCATGTMGIRGNLTSGEILEQLVHASRILAFDL----------------IRNVVFM 99

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
           GMGEPL N+ NV  +     D    + +  R+T+ST G V  I  +  ++  V LA+SLH
Sbjct: 100 GMGEPLNNYANVLAACRAMIDRRLWNLAHNRVTVSTVGVVSRIRDLTRDLPEVNLALSLH 159

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A +  +R  +VP  +  P+E LI+A   +  ++  +R   EYVML+G   +   A  L +
Sbjct: 160 APNQKMREAIVPAAKGTPIESLIEALDAH-MMAKKKRAMIEYVMLEGDTSTIEAAHQLGQ 218

Query: 305 ILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           + +G    +NLIP+N     +   C  ++ +  F   +   G    IR   G DI  ACG
Sbjct: 219 LCRGRQLVVNLIPYNKTDVRDKLSCPSEEHMQEFRSIVSSYGSFCSIRRTMGADIAGACG 278

Query: 364 QL 365
           QL
Sbjct: 279 QL 280


>gi|301793926|emb|CBW36322.1| SAM-dependent methyltransferase [Streptococcus pneumoniae INV104]
          Length = 243

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/248 (31%), Positives = 137/248 (55%), Gaps = 22/248 (8%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN  F +   +  
Sbjct: 1   MQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQG 56

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
             + S DGT K+L   P   +     IETV + +    ++CV++QVGC++ C+FC +G  
Sbjct: 57  IVQESADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCNIGCTFCASGLI 111

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
           K  R+L   EI+ Q++L +    +                 +IS+IV+MG+GEP  N++N
Sbjct: 112 KKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVMGIGEPFDNYNN 159

Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255
           V       +D  G++   R IT+S SG    I    +E + V LA+SLHA +N+LR+ ++
Sbjct: 160 VLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIM 219

Query: 256 PINRKYPL 263
            INR +P+
Sbjct: 220 KINRAFPI 227


>gi|146307182|ref|YP_001187647.1| radical SAM domain-containing protein [Pseudomonas mendocina ymp]
 gi|205829635|sp|A4XU99|Y2155_PSEMY RecName: Full=Probable RNA methyltransferase Pmen_2155
 gi|145575383|gb|ABP84915.1| Radical SAM domain protein [Pseudomonas mendocina ymp]
          Length = 346

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 101/378 (26%), Positives = 169/378 (44%), Gaps = 44/378 (11%)

Query: 12  MMREELEEALLKIGIPQRHVRM--RTSQIWKWIYVR----GIRDFQGMSDISQEVRHLLN 65
           M   +L + L  +G   +H+    R      W+  +    G +  +  + +   VR  L 
Sbjct: 1   MQLADLTQRLAALGAKPQHIGRITRA-----WLQGKPLDTGTKHQKTENFLPLSVRQELP 55

Query: 66  QHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
              + +     +  E    DG+ + L+    +       +E+V +P   R  LC+SSQVG
Sbjct: 56  AIAAELDALVRLRSEHPGADGSARLLVELADK-----QMVESVLLP---RDGLCISSQVG 107

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TG   L+R L++ E++ QV L R                     R +  +V
Sbjct: 108 CAVGCVFCMTGKSGLLRQLSSAEMVAQVALGRRF-------------------RPVKKVV 148

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
            MGMGEP  N DNV +++ +     G     + +  ST G      R+ ++ +   LA+S
Sbjct: 149 FMGMGEPAHNLDNVLEAIDLLGTEGG--IGHKNLVFSTVGDPRVFERLPQQRVRPALALS 206

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH    +LR  L+P   +   E L++    Y   S    I +++ +LKGINDS ++  N+
Sbjct: 207 LHTTDAELRQRLLPKAPRIDPEQLMELGEAY-ARSIDYPIQYQWTLLKGINDSQQEMDNI 265

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +++ KG  A +NLIP+N      Y   D + IV     +   G  + +R   G DI   C
Sbjct: 266 LRLFKGKFAVLNLIPYNSLDADNYQRPDGERIVQMVRYLHSRGVLTKVRNSAGQDIDGGC 325

Query: 363 GQLKSLSKRIPKVPRQEM 380
           GQL++ +  +    R  +
Sbjct: 326 GQLRARAVDLVNTSRLRL 343


>gi|218892205|ref|YP_002441072.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
 gi|218772431|emb|CAW28213.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
          Length = 346

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 105/378 (27%), Positives = 168/378 (44%), Gaps = 50/378 (13%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---------GIRDFQGMSDISQEVRH 62
           M  ++L + L  +G    H       +  W+  R            DF     +   VRH
Sbjct: 1   MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQRAEDF-----LPLGVRH 52

Query: 63  LLNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
            L Q  +       +  E  + DG+ + L+    R       +E+V +P   RG LCVS+
Sbjct: 53  GLPQVAAELEGIARLHSEHPASDGSSRLLVELADR-----QMVESVLLP---RGGLCVST 104

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C FC TG   L+R + + E++ QV+LAR                     R + 
Sbjct: 105 QVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVK 145

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
            +V MGMGEP  N DNV +++ +     G     + +  ST G      R+  + +   L
Sbjct: 146 KVVFMGMGEPAHNLDNVLEAIDLLGTDGG--IGHKNLVFSTVGDPRVFERLPRQRVKPAL 203

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+   +LR  L+P       E L++A   Y    +   I +++ +L+GINDS  + 
Sbjct: 204 ALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEM 262

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             ++++LKG  A +NLIP+N   G  Y     + IV     +   G  + +R   G DI 
Sbjct: 263 DGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDID 322

Query: 360 AACGQLKSLSKRIPKVPR 377
             CGQL++ + +     R
Sbjct: 323 GGCGQLRARATQATVERR 340


>gi|116049791|ref|YP_791402.1| hypothetical protein PA14_40730 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122258902|sp|Q02KY4|Y4073_PSEAB RecName: Full=Probable RNA methyltransferase PA14_40730
 gi|115585012|gb|ABJ11027.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 346

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 104/374 (27%), Positives = 167/374 (44%), Gaps = 42/374 (11%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG-----IRDFQGMSDISQEVRHLLNQ 66
           M  ++L + L  +G    H       +  W+  R       R       +   VRH L Q
Sbjct: 1   MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQPAE-DFLPLGVRHGLPQ 56

Query: 67  HFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +       +  E  + DG+ + L+    R       +E+V +P   RG LCVS+QVGC
Sbjct: 57  VAAELEGIARLHSEHPASDGSSRLLVELADR-----QMVESVLLP---RGGLCVSTQVGC 108

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC TG   L+R + + E++ QV+LAR                     R +  +V 
Sbjct: 109 AVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVKKVVF 149

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISL 243
           MGMGEP  N DNV +++ +     G     + +  ST G      R+  + +   LA+SL
Sbjct: 150 MGMGEPAHNLDNVLEAIDLLGTDGG--IGHKNLVFSTVGDPRVFERLPLQRVKPALALSL 207

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+   +LR  L+P       E L++A   Y    +   I +++ +L+GINDS  +   ++
Sbjct: 208 HSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEMDGIL 266

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG  A +NLIP+N   G  Y     + IV     +   G  + +R   G DI   CG
Sbjct: 267 RLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDIDGGCG 326

Query: 364 QLKSLSKRIPKVPR 377
           QL++ + +     R
Sbjct: 327 QLRARATQGTAERR 340


>gi|15597036|ref|NP_250530.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
           aeruginosa PAO1]
 gi|107101272|ref|ZP_01365190.1| hypothetical protein PaerPA_01002306 [Pseudomonas aeruginosa PACS2]
 gi|313110540|ref|ZP_07796425.1| hypothetical protein PA39016_002410127 [Pseudomonas aeruginosa
           39016]
 gi|81622417|sp|Q9I2Q6|Y1839_PSEAE RecName: Full=Probable RNA methyltransferase PA1839
 gi|9947826|gb|AAG05228.1|AE004610_1 hypothetical protein PA1839 [Pseudomonas aeruginosa PAO1]
 gi|310882927|gb|EFQ41521.1| hypothetical protein PA39016_002410127 [Pseudomonas aeruginosa
           39016]
          Length = 346

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 105/378 (27%), Positives = 168/378 (44%), Gaps = 50/378 (13%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---------GIRDFQGMSDISQEVRH 62
           M  ++L + L  +G    H       +  W+  R            DF     +   VRH
Sbjct: 1   MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQRAEDF-----LPLGVRH 52

Query: 63  LLNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
            L Q  +       +  E  + DG+ + L+    R       +E+V +P   RG LCVS+
Sbjct: 53  GLPQVAAELEGIARLHSEHPASDGSSRLLVELADR-----QMVESVLLP---RGGLCVST 104

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C FC TG   L+R + + E++ QV+LAR                     R + 
Sbjct: 105 QVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVK 145

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
            +V MGMGEP  N DNV +++ +     G     + +  ST G      R+  + +   L
Sbjct: 146 KVVFMGMGEPAHNLDNVLEAIDLLGTDGG--IGHKNLVFSTVGDPRVFERLPRQRVKPAL 203

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+   +LR  L+P       E L++A   Y    +   I +++ +L+GINDS  + 
Sbjct: 204 ALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEM 262

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             ++++LKG  A +NLIP+N   G  Y     + IV     +   G  + +R   G DI 
Sbjct: 263 DGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDID 322

Query: 360 AACGQLKSLSKRIPKVPR 377
             CGQL++ + +     R
Sbjct: 323 GGCGQLRARATQGTAERR 340


>gi|34497708|ref|NP_901923.1| ribosomal RNA large subunit methyltransferase N [Chromobacterium
           violaceum ATCC 12472]
 gi|81655644|sp|Q7NVT9|Y2253_CHRVO RecName: Full=Probable RNA methyltransferase CV_2253
 gi|34103564|gb|AAQ59925.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 352

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 99/382 (25%), Positives = 160/382 (41%), Gaps = 44/382 (11%)

Query: 12  MMREELEEALLKIGIPQRHVRM--RTSQIWKWI----YVRGIRDFQGMSDISQEVRHLLN 65
           M  +E  +AL  IG    H+    R      W+       G R  +        VR  L 
Sbjct: 1   MHIQEFHQALADIGARPCHIGRINRA-----WLKGLPLDAGTRHQKSEDYFPLSVREGLA 55

Query: 66  QHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
              + I     I     + DG+ + L+      +G    +E+V +P   R  LCVSSQVG
Sbjct: 56  PIAARIEKLARIHSRHDADDGSLRLLV-----GLGDGQMVESVLLP---RDGLCVSSQVG 107

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC TG   L+R L + EI  QV LAR +                   R +  +V
Sbjct: 108 CAVGCTFCMTGKSGLLRQLGSAEIAAQVALARRI-------------------RPVKKVV 148

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
            MGMGEP  N +NV +++         +   + +  ST G      R+ + E+   LA+S
Sbjct: 149 FMGMGEPAHNMENVLEAIQWLGTDG--NIGHKNLVFSTVGDARVFERLPQLEVKPALALS 206

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH    DLR  L+P   +     L++    Y        I +++ +L G+NDS  +    
Sbjct: 207 LHTTRADLREQLLPRAPRIAPAELVELGEAYARRV-GYPIQYQWTLLAGVNDSQEEMDAA 265

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
            ++LKG    +N+IP+N   G  +     + +      +  +G  + +R   G D+   C
Sbjct: 266 ARLLKGKYGVLNIIPYNSVEGDRFQRPSSERVQAIKRYLHDNGVLTKVRDSAGQDVDGGC 325

Query: 363 GQLKSLSKRIPKVPRQEMQITG 384
           GQL++ +  +    R   +   
Sbjct: 326 GQLRARAAHVIDASRLRRREQA 347


>gi|254234935|ref|ZP_04928258.1| hypothetical protein PACG_00810 [Pseudomonas aeruginosa C3719]
 gi|126166866|gb|EAZ52377.1| hypothetical protein PACG_00810 [Pseudomonas aeruginosa C3719]
          Length = 346

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 105/378 (27%), Positives = 168/378 (44%), Gaps = 50/378 (13%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---------GIRDFQGMSDISQEVRH 62
           M  ++L + L  +G    H       +  W+  R            DF     +   VRH
Sbjct: 1   MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQRAEDF-----LPLGVRH 52

Query: 63  LLNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
            L Q  +       +  E  + DG+ + L+    R       +E+V +P   RG LCVS+
Sbjct: 53  GLPQVAAELEGIARLHSEHPASDGSSRLLVELADR-----QMVESVLLP---RGGLCVST 104

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C FC TG   L+R + + E++ QV+LAR                     R + 
Sbjct: 105 QVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVK 145

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
            +V MGMGEP  N DNV +++ +     G     + +  ST G      R+  + +   L
Sbjct: 146 KVVFMGMGEPAHNLDNVLEAIDLLGTDGG--IGHKNLVFSTVGDPRVFERLPRQRVKPAL 203

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+   +LR  L+P       E L++A   Y    +   I +++ +L+GINDS  + 
Sbjct: 204 ALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEM 262

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             ++++LKG  A +NLIP+N   G  Y     + IV     +   G  + +R   G DI 
Sbjct: 263 DGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDID 322

Query: 360 AACGQLKSLSKRIPKVPR 377
             CGQL++ + +     R
Sbjct: 323 GGCGQLRARAAQGTAERR 340


>gi|296389768|ref|ZP_06879243.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
           aeruginosa PAb1]
          Length = 346

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 104/374 (27%), Positives = 167/374 (44%), Gaps = 42/374 (11%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG-----IRDFQGMSDISQEVRHLLNQ 66
           M  ++L + L  +G    H       +  W+  R       R       +   VRH L Q
Sbjct: 1   MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQPAE-DFLPLGVRHGLPQ 56

Query: 67  HFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
             +       +  E  + DG+ + L+    R       +E+V +P   RG LCVS+QVGC
Sbjct: 57  VAAELEGIARLHSEHPASDGSSRLLVELADR-----QMVESVLLP---RGGLCVSTQVGC 108

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC TG   L+R + + E++ QV+LAR                     R +  +V 
Sbjct: 109 AVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVKKVVF 149

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISL 243
           MGMGEP  N DNV +++ +     G     + +  ST G      R+  + +   LA+SL
Sbjct: 150 MGMGEPAHNLDNVLEAIDLLGTDGG--IGHKNLVFSTVGDPRVFERLPRQRVKPALALSL 207

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H+   +LR  L+P       E L++A   Y    +   I +++ +L+GINDS  +   ++
Sbjct: 208 HSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEMDGIL 266

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG  A +NLIP+N   G  Y     + IV     +   G  + +R   G DI   CG
Sbjct: 267 RLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDIDGGCG 326

Query: 364 QLKSLSKRIPKVPR 377
           QL++ + +     R
Sbjct: 327 QLRARATQGTAERR 340


>gi|224825445|ref|ZP_03698550.1| Radical SAM domain protein [Lutiella nitroferrum 2002]
 gi|224602366|gb|EEG08544.1| Radical SAM domain protein [Lutiella nitroferrum 2002]
          Length = 354

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 97/363 (26%), Positives = 159/363 (43%), Gaps = 36/363 (9%)

Query: 12  MMREELEEALLKIG-IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL---NQH 67
           M  ++L+ +L  IG +P    R++ + +       G R  +        VR+ L      
Sbjct: 1   MRIQDLQHSLAAIGALPCHIGRIQRAWLKGQPLDAGTRRQKSEDYFPLSVRNGLPPIAAQ 60

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
                  I  +  + DG+ + L++           +E+V +P   R  LCVSSQVGC++ 
Sbjct: 61  VE-GLARIQSQHPAADGSLRLLVQLND-----GQMVESVLLP---RDGLCVSSQVGCAVG 111

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC TG   L+R L + EI  QV LAR +                   R +  +V MGM
Sbjct: 112 CTFCMTGKSGLLRQLGSAEIAAQVALARRI-------------------RPVKKVVFMGM 152

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEP  N DNV  ++ +           + + LST G      R+ ++ +   LA+SLH  
Sbjct: 153 GEPAHNLDNVLDAIDLLGSDG--HIGHKNLVLSTVGDPRVFERLPQQHVKPALALSLHTT 210

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
             +LR  L+P   +Y    L+     Y        I +++ +L G+ND+  +    +++L
Sbjct: 211 RAELRAQLLPRAPRYDPAELVALGEDYARRV-GYPIQYQWTLLAGVNDTQEEMDAAVRLL 269

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
           KG    +N+IP+N   G  Y     + I      +   G  + +R   G DI   CGQL+
Sbjct: 270 KGKYGVLNIIPYNSVEGDHYQRPSAERIHLMKRYLHDHGVLTKVRDSAGQDIDGGCGQLR 329

Query: 367 SLS 369
           + +
Sbjct: 330 ARA 332


>gi|315281048|ref|ZP_07869771.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii
           FSL S4-120]
 gi|313615305|gb|EFR88727.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii
           FSL S4-120]
          Length = 235

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/245 (36%), Positives = 140/245 (57%), Gaps = 18/245 (7%)

Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
            EI+ Q++  +              +   ++  ++S++V+MG+GEP  N+DNV   L + 
Sbjct: 1   GEIVEQIMNVQHY------------LDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVI 48

Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPL 263
           +   GL+   R IT+STSG  P I     E+  V LAISLHA +N+LR  ++ IN+ Y +
Sbjct: 49  NHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSI 108

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPW 321
           E L++A  +Y   +N  RITFEY+MLKG+ND  ++AL L  +L      A +NLIP+NP 
Sbjct: 109 EKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPV 167

Query: 322 PGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQE 379
               +Y  S ++D++ F + +K++G +  IR   G DI AACGQL+S   KR+    R +
Sbjct: 168 DEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMK 227

Query: 380 MQITG 384
            +   
Sbjct: 228 QKQAA 232


>gi|254240233|ref|ZP_04933555.1| hypothetical protein PA2G_00875 [Pseudomonas aeruginosa 2192]
 gi|126193611|gb|EAZ57674.1| hypothetical protein PA2G_00875 [Pseudomonas aeruginosa 2192]
          Length = 346

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 105/378 (27%), Positives = 168/378 (44%), Gaps = 50/378 (13%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---------GIRDFQGMSDISQEVRH 62
           M  ++L + L  +G    H       +  W+  R            DF     +   VRH
Sbjct: 1   MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQRAEDF-----LPLGVRH 52

Query: 63  LLNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
            L Q  +       +  E  + DG+ + L+    R       +E+V +P   RG LCVS+
Sbjct: 53  GLPQVAAELEGIARLHSEHPASDGSSRLLVELADR-----QMVESVLLP---RGGLCVST 104

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C FC TG   L+R + + E++ QV+LAR                     R + 
Sbjct: 105 QVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVK 145

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
            +V MGMGEP  N DNV +++ +     G     + +  ST G      R+  + +   L
Sbjct: 146 KVVFMGMGEPAHNLDNVLEAIDLLGTDGG--IGHKNLVFSTVGDPRVFERLPRQRVKPAL 203

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH+   +LR  L+P       E L++A   Y    +   I +++ +L+GINDS  + 
Sbjct: 204 ALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEM 262

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             ++++LKG  A +NLIP+N   G  Y     + IV     +   G  + +R   G DI 
Sbjct: 263 DGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDID 322

Query: 360 AACGQLKSLSKRIPKVPR 377
             CGQL++ + +     R
Sbjct: 323 GGCGQLRARATQGTVERR 340


>gi|209879529|ref|XP_002141205.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
 gi|209556811|gb|EEA06856.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
          Length = 529

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/442 (22%), Positives = 166/442 (37%), Gaps = 129/442 (29%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRF 92
              ++W+++  + +++F  + DI + +   +  +F ++   IV    + DG T K ++R 
Sbjct: 33  HAYRVWRYLIQKNVKEFSDIPDIPKRILEEIQLNFKLLTSNIVQSHTTDDGNTTKLIIRL 92

Query: 93  PARCIGGPVEIETVYIPEKS-------------------------RGTLCVSSQVGCSLT 127
                    EIETV +                             R +LCVSSQ+GC + 
Sbjct: 93  QD-----GHEIETVIMRYDRCNDVAKKSENKNLDTLEVPNLPIYRRVSLCVSSQIGCRIG 147

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C+FC TGT  L  +L   EI+ QV  A ++L +                  + N+V MGM
Sbjct: 148 CTFCATGTLGLGGSLVTGEIIEQVYHAINILNE-----------------PVKNVVFMGM 190

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAV 246
           GEPL N++ V  ++ I  D+     S  +I++ST G    I  + +++  V L +SLHA 
Sbjct: 191 GEPLENYNEVVDAIKILLDTRLYGLSPSKISISTVGIPSGIVNMADDLPGVGLCLSLHAP 250

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLS----------------------------- 277
              LR  +VPI + Y +  LI +   +   S                             
Sbjct: 251 DQVLREQIVPIAKMYKISELIRSTDIFIAKSILNKFIKKITDQRNNRTEIKIDNLESTII 310

Query: 278 ------NARRITFEYVMLKGINDSPRDALNLIKILKGIP--------------------- 310
                 +   +  EY+++K +NDS   A  L  +L                         
Sbjct: 311 SPKWFNSHSTVMIEYILIKDVNDSINHAKALANLLNNTYTDKNDINMIFERCIQSERLEK 370

Query: 311 -------------------AKINLIPF---NPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348
                                +N++P+   N  P  +Y    +  + TF   +   G   
Sbjct: 371 KVAKSFQKAFLDNYKRSNFIFVNILPYSETNATP--KYATPSEGKVRTFCRILNNYGIVV 428

Query: 349 PIRTPRGLDILAACGQLKSLSK 370
            +R   G DI  ACGQL    K
Sbjct: 429 TVRRKMGQDIGGACGQLAFKGK 450


>gi|332531263|ref|ZP_08407176.1| ribosomal RNA large subunit methyltransferase N [Hylemonella
           gracilis ATCC 19624]
 gi|332039370|gb|EGI75783.1| ribosomal RNA large subunit methyltransferase N [Hylemonella
           gracilis ATCC 19624]
          Length = 357

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 101/374 (27%), Positives = 164/374 (43%), Gaps = 42/374 (11%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRD-FQGMSDI-SQEVRHLLNQHFS 69
           M  E L   L  +G   RH   R  ++W     +   D  + + +     +R  L     
Sbjct: 1   MQIETLRRRLRALGANPRHQ-YRVLRLWSQ--AKPQDDGPRPIENFLPASLRAALPDIAR 57

Query: 70  --IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG----TLCVSSQVG 123
                  +  E    DG+R+ ++      +     +E+V +P         TLCVS+QVG
Sbjct: 58  DLAALATLDAEHPGEDGSRRLVV-----ALADGQLVESVLMPTAGSRQRAPTLCVSTQVG 112

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC TG   L+R L + EI+ QV LAR                       +  +V
Sbjct: 113 CAVGCVFCMTGRAGLIRQLGSAEIVAQVALAR-------------------ASATVRRVV 153

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV----GEEIGVML 239
            MGMGEP  N DNV +++ +   +       + +  ST G       +     +++   L
Sbjct: 154 FMGMGEPAHNLDNVLEAIDLLGTAG--DIGHKNLVFSTVGDPRVFEALQSRGADQVRPAL 211

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH    DLR  L+P   +   E L+DA   Y  L+ A  I +++ +L GINDS  + 
Sbjct: 212 ALSLHTTRADLRAQLLPRAPRLTPEELVDAGERYARLT-AYPIQYQWTLLDGINDSDEEI 270

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             L+++L+G  A +NLIP+N      Y    Q+  V  +  + + G  + +R   G D+ 
Sbjct: 271 EGLVRLLQGKYAILNLIPYNAVDDLPYRRPAQEAAVAMARRLHQRGILTKLRQSAGQDVD 330

Query: 360 AACGQLKSLSKRIP 373
             CGQL++ + +  
Sbjct: 331 GGCGQLRARAVQAQ 344


>gi|82523823|emb|CAI78565.1| hypothetical protein [uncultured candidate division OP8 bacterium]
          Length = 365

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 168/367 (45%), Gaps = 37/367 (10%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
             +   EL  AL   G+  R       ++   +  R     + + ++S ++   + +   
Sbjct: 26  KDLTAAELHAALAPEGVSLRL----ARRLQAAVLKRDAF-PRTLPEVSDKMLARIREEVR 80

Query: 70  IIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIP-----EKSRGTLCVSSQVG 123
           +    + D+ +S  DG  K+L +       GP   E V IP        +   C+SSQVG
Sbjct: 81  LPKLVLKDKAVSARDGFAKYLFQ-----GDGPEPFEAVRIPLLHRSGDEKYIACLSSQVG 135

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C+FC TG    VRNL+A E++ QV+                  +       I   V
Sbjct: 136 CALGCAFCATGRMGFVRNLSAWEMVDQVI-----------------RLSADSEHPIRGAV 178

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242
            MGMGEP+ N++ V ++  I  +  GL+ S + +++ST+G VP I R   + +   L +S
Sbjct: 179 FMGMGEPMLNYEAVVRAARILCEPCGLAVSAKAVSISTAGVVPGIRRFTADRLPFRLVVS 238

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L +  +  R  ++P+ + YPL  L++A R Y   S+ +R+   + M+ G N    DA+ L
Sbjct: 239 LTSADSARRREVMPLEQAYPLTDLMEAVREY-HKSSGQRVILAWTMISGFNTREEDAVQL 297

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAA 361
             +++G+P +++LI  N   G  +      ++  F + + +        R   G DI AA
Sbjct: 298 AALVRGLPIRLDLIDVNDATGR-FKPPSSLELHEFRDALSKHLKMPVARRYSGGKDIRAA 356

Query: 362 CGQLKSL 368
           CG L   
Sbjct: 357 CGMLAGR 363


>gi|308802175|ref|XP_003078401.1| unnamed protein product [Ostreococcus tauri]
 gi|116056853|emb|CAL53142.1| unnamed protein product [Ostreococcus tauri]
          Length = 368

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 92/319 (28%), Positives = 137/319 (42%), Gaps = 45/319 (14%)

Query: 62  HLLNQH---FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPE-KSRGTL 116
             L      F +    +  E  S DG T K ++           +IE   +   K R TL
Sbjct: 12  ERLRDGTSGFELYTTRVAHESASSDGSTTKLIVELQD-----GHKIEACVMRHAKGRTTL 66

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           CVSSQVGC + C+FC TGT   + NL + EIL Q+  A                      
Sbjct: 67  CVSSQVGCKMGCTFCATGTLGELGNLASFEILEQLAHANR-------------------- 106

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235
                     +  PL N+D+V +++ + +D    + S  +IT+ST G +P +  +  +  
Sbjct: 107 ----------VAAPLNNYDSVIEAIGVMTDDKAFALSASKITVSTVGVIPRMRTLTRDAP 156

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
           G  LA+SLHA + +LR  +VP    Y L+ L+     Y       +   EY +L G+ND 
Sbjct: 157 GTCLALSLHAPTQELRQKIVPTATAYKLDDLMRVLEEYLASGPKMKTMIEYCVLGGVNDD 216

Query: 296 PRDALNLIKILKGIPAKI--NLIPFNPWPG-CEYLCSDQKDIVTFSECI-KRSGYSSPIR 351
              A  L ++ +G   KI  NLIP NP      ++    + +    E + K+ G     R
Sbjct: 217 ETCAEKLGELFRGKEEKIILNLIPLNPTDTPAGHVPPTPEAVRKMMEILMKKYGLFVTRR 276

Query: 352 TPRGLDILAACGQLKSLSK 370
              G DI  ACGQL   + 
Sbjct: 277 HTMGDDIAGACGQLALKTP 295


>gi|258597636|ref|XP_001348239.2| radical SAM protein, putative [Plasmodium falciparum 3D7]
 gi|255528761|gb|AAN36678.2| radical SAM protein, putative [Plasmodium falciparum 3D7]
          Length = 362

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 167/376 (44%), Gaps = 39/376 (10%)

Query: 21  LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV-DEK 79
           L+K+   ++  + R  QI   IY   I +   M +I  E+R  L   F      I   ++
Sbjct: 10  LIKMMERKKFEKYRLKQIMDNIYKGKIIEINKMKNIPTEIRRELKNIFHNNILSIKPIKE 69

Query: 80  ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
           +  D   K L +          +IE   +   S  +LC+SSQ+GCS  C FC TG   + 
Sbjct: 70  LKYDRAYKVLFQCKDN-----EKIEATSLDFGSHKSLCISSQIGCSFGCKFCATGQIGIK 124

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           R L  +EI  Q+L  +                  S G  I NI  MGMGEPL N   V  
Sbjct: 125 RQLDIDEITDQLLYFQ------------------SKGVDIKNISFMGMGEPLAN-PYVFD 165

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPIN 258
           S+   +D+   S S RRI +ST G +P I ++      V LA SLH+   + R+ LVPIN
Sbjct: 166 SIQFFNDNNLFSISNRRINISTVGLLPGIKKLNNIFPQVNLAFSLHSPFTEERDQLVPIN 225

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP------AK 312
           + +P   + D        +   R+   Y+++K +NDS   A  L   +   P        
Sbjct: 226 KLFPFNEVFDLLDERIAKTGR-RVWISYILIKNLNDSKDHAEALSDHICKRPNNIRYLYN 284

Query: 313 INLIPFNPWPGCE--YLC-SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL- 368
           + LIP+N     +  +    D + I+ F + +K++G S   R   G  I AACGQL +  
Sbjct: 285 VCLIPYNKAKNVDENFHRLDDAEKILQFEKILKKNGISFFYRNSFGYSIDAACGQLYADY 344

Query: 369 --SKRIPKVPRQEMQI 382
              KR  K+  + M +
Sbjct: 345 EPKKRKEKIESKNMSL 360


>gi|119896414|ref|YP_931627.1| ribosomal RNA large subunit methyltransferase N [Azoarcus sp. BH72]
 gi|119668827|emb|CAL92740.1| probable Fe-S cluster redox enzyme [Azoarcus sp. BH72]
          Length = 390

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 173/373 (46%), Gaps = 42/373 (11%)

Query: 12  MMREELEEALLKIGIPQRHVR--MRTSQIWKWIYVRGIRDFQGMSDI--SQEVRHLLNQ- 66
           M  ++L + L  +G    H +  +R      W+    + + +  +       +R  L   
Sbjct: 44  MRIDDLTQRLRALGAKPAHEQRVLRA-----WVQRSSMDNRRQAAKDFLPLALREALPAL 98

Query: 67  HFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              +     +  +    DG+ + L+            +E+V +    R  LCVS+Q+GC+
Sbjct: 99  TAELEGLARLRSQHPGEDGSARLLVEL-----ADGQTVESVLL---LRDGLCVSTQLGCA 150

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG + L+R L + EI+ QV+LARSL                   R +  +V M
Sbjct: 151 VGCVFCMTGREGLLRQLGSAEIVAQVVLARSL-------------------RPVKKVVFM 191

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLH 244
           GMGEP  N DNV +++ +   + G     + +  ST G      R+  + +   LA+SLH
Sbjct: 192 GMGEPAHNLDNVLEAIDLLGTAGG--IGHKNLVFSTVGDYRVFERLPRQRVKPALALSLH 249

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
               DLR  L+P   +   + L++    Y   S    I +++ +++G+NDSP +   +++
Sbjct: 250 TTRADLRAQLLPRAPQIAPQELVELGERY-ARSTGYPIQYQWTLIEGVNDSPEEMDGIVR 308

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+G  A +NLIP+N  P  E+    ++  V  +  + R G  + +R   G D+   CGQ
Sbjct: 309 LLRGKYALMNLIPYNSVPELEFRRPGREAAVALAAYLHRHGVLAKLRQSAGQDVEGGCGQ 368

Query: 365 LKSLSKRIPKVPR 377
           L++   ++ + PR
Sbjct: 369 LRARVVKMDRRPR 381


>gi|205829719|sp|A1K1N5|Y122_AZOSB RecName: Full=Probable RNA methyltransferase azo0122
          Length = 347

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 173/373 (46%), Gaps = 42/373 (11%)

Query: 12  MMREELEEALLKIGIPQRHVR--MRTSQIWKWIYVRGIRDFQGMSDI--SQEVRHLLNQ- 66
           M  ++L + L  +G    H +  +R      W+    + + +  +       +R  L   
Sbjct: 1   MRIDDLTQRLRALGAKPAHEQRVLRA-----WVQRSSMDNRRQAAKDFLPLALREALPAL 55

Query: 67  HFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
              +     +  +    DG+ + L+            +E+V +    R  LCVS+Q+GC+
Sbjct: 56  TAELEGLARLRSQHPGEDGSARLLVEL-----ADGQTVESVLL---LRDGLCVSTQLGCA 107

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG + L+R L + EI+ QV+LARSL                   R +  +V M
Sbjct: 108 VGCVFCMTGREGLLRQLGSAEIVAQVVLARSL-------------------RPVKKVVFM 148

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLH 244
           GMGEP  N DNV +++ +   + G     + +  ST G      R+  + +   LA+SLH
Sbjct: 149 GMGEPAHNLDNVLEAIDLLGTAGG--IGHKNLVFSTVGDYRVFERLPRQRVKPALALSLH 206

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
               DLR  L+P   +   + L++    Y   S    I +++ +++G+NDSP +   +++
Sbjct: 207 TTRADLRAQLLPRAPQIAPQELVELGERY-ARSTGYPIQYQWTLIEGVNDSPEEMDGIVR 265

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L+G  A +NLIP+N  P  E+    ++  V  +  + R G  + +R   G D+   CGQ
Sbjct: 266 LLRGKYALMNLIPYNSVPELEFRRPGREAAVALAAYLHRHGVLAKLRQSAGQDVEGGCGQ 325

Query: 365 LKSLSKRIPKVPR 377
           L++   ++ + PR
Sbjct: 326 LRARVVKMDRRPR 338


>gi|71906796|ref|YP_284383.1| radical SAM family protein [Dechloromonas aromatica RCB]
 gi|123733307|sp|Q47GW8|Y1157_DECAR RecName: Full=Probable RNA methyltransferase Daro_1157
 gi|71846417|gb|AAZ45913.1| Radical SAM [Dechloromonas aromatica RCB]
          Length = 357

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 151/318 (47%), Gaps = 35/318 (11%)

Query: 56  ISQEVRHLL---NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112
           + Q +R  L    +  S +   +  E    DG+ + L+            +E+V +P   
Sbjct: 46  LPQALRTALPALQEELSALA-RVRSEHPGEDGSSRLLVEL-----ADGQTVESVLLP--- 96

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           R  LC+S+Q+GC++ C+FC TG   L+R +++ E++ QV+L R                 
Sbjct: 97  RDGLCISTQIGCAVGCTFCMTGRDGLLRQVSSAEMVAQVVLGR----------------- 139

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
               RK++ +V MGMGEP  N DNV +++       G     + +  ST G      R+ 
Sbjct: 140 --GRRKVTRVVFMGMGEPSHNMDNVLEAIDTLGTYGG--IGHKNLVFSTVGDRRVFDRLP 195

Query: 233 EEIGV-MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           ++  V  LA+SLH+   +LR  L+P         L++   HY   +    I +++ ++ G
Sbjct: 196 QQRVVPALALSLHSTRAELRAELLPKAPHIDPTELVELAEHY-ARTTGYPIQYQWTLIDG 254

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
           INDS  +   ++++L G  A +NLIP+N     +Y     + I T ++ +   G  + +R
Sbjct: 255 INDSIEEMDGIVRLLTGKYAIMNLIPYNATATLDYRRPSLEHITTLTKYLHAKGIRTTVR 314

Query: 352 TPRGLDILAACGQLKSLS 369
              G D+   CGQL++ +
Sbjct: 315 NSAGQDVDGGCGQLRART 332


>gi|124268797|ref|YP_001022801.1| ribosomal RNA large subunit methyltransferase N [Methylibium
           petroleiphilum PM1]
 gi|205829646|sp|A2SLX7|Y3613_METPP RecName: Full=Probable RNA methyltransferase Mpe_A3613
 gi|124261572|gb|ABM96566.1| Fe-S-cluster redox enzyme,radical SAM family [Methylibium
           petroleiphilum PM1]
          Length = 352

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 93/364 (25%), Positives = 161/364 (44%), Gaps = 41/364 (11%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKW---IYVRGIRDFQGMSDISQEVRHLL-NQH 67
           M  E+L E L  +G    H +   S +  W   +  +     + +  +   +R  L    
Sbjct: 1   MRIEQLREHLRALGARPGHEQ---SVLRHWACALPQQRRSAREDV--LPLALREALPALE 55

Query: 68  FSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             +     +  E  + DG+ + L+      +     +E+V +P   R  LCVS+QVGC++
Sbjct: 56  AELQGLARLRSEHSAEDGSARLLV-----ALADGQTVESVLLP---RDGLCVSTQVGCAV 107

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L+R L + EI+ QV LAR                     R +  +V MG
Sbjct: 108 GCVFCMTGQGGLLRQLGSAEIVAQVALARGH-------------------RAVKKVVFMG 148

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
           MGEP  N DNV +++ +   + G     + +  ST G      R+ +  +   LA+SLH 
Sbjct: 149 MGEPAHNLDNVLEAIELLGTAGG--IGHKNLVFSTVGDERVFERLPQGAVKPALALSLHT 206

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              +LR  L+P   +   E L+     Y   +    + +++ ++ G+ND   +   ++++
Sbjct: 207 TKPELRAQLLPRAPRIAPEDLVAHGERYARAT-GYPVQYQWTLIDGVNDGDDELDGIVRL 265

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L G  A +NLIP+N   G  +     +  V  +  + R G  + +R   G D+   CGQL
Sbjct: 266 LAGRYAVMNLIPYNTVDGLAFQRPAWERAVAMAGALHRRGVLTKLRRSAGQDVEGGCGQL 325

Query: 366 KSLS 369
           ++ +
Sbjct: 326 RARA 329


>gi|86160645|ref|YP_467430.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85777156|gb|ABC83993.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 309

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 102/317 (32%), Positives = 151/317 (47%), Gaps = 32/317 (10%)

Query: 61  RHLLNQH---FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTL 116
           R +L++     +     +++   + DG RK+L   P       + +ETV IP   +   +
Sbjct: 16  RSVLDEVDALATPGELRLLESVDAKDGFRKYLFELPD-----GLRVETVRIPLYDTHHVV 70

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           C+SSQ GC+L C+FC T    L R+L + E++ Q+L  R                     
Sbjct: 71  CLSSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAVR-----------------ADSE 113

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEI 235
           R I+ +V MG GEP  N+D V  +     D  G     RRI++ST+G VP I R   E  
Sbjct: 114 RPITGVVFMGQGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGH 173

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              L ISL+A     R  L+P+ + +PL+ L++A R +  L    R+T EYVM+ G+N  
Sbjct: 174 KFRLCISLNAAMPWKRRALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVG 231

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTP 353
             DA  L ++L GIP ++N I  N   G  Y   D+ +   F + + R   G     R  
Sbjct: 232 EEDAAALGRLLAGIPVRLNPIAVNDASGR-YRPPDEDEWNAFRDALARELPGTPVVRRYS 290

Query: 354 RGLDILAACGQLKSLSK 370
            G D  AACG L S  +
Sbjct: 291 GGQDEHAACGMLASRRR 307


>gi|255017664|ref|ZP_05289790.1| hypothetical protein LmonF_07755 [Listeria monocytogenes FSL
           F2-515]
          Length = 218

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/239 (31%), Positives = 128/239 (53%), Gaps = 22/239 (9%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+    L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +   E    + S DGT K+L +     +     IETV + ++   ++CV++QVG
Sbjct: 57  LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC +G  K  R+LTA EI+ Q++  +              +   ++  ++S++V
Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           +MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I     E+  V LAI
Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAI 218


>gi|205829721|sp|Q2IHD1|Y4229_ANADE RecName: Full=Probable RNA methyltransferase Adeh_4229
          Length = 338

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 102/317 (32%), Positives = 151/317 (47%), Gaps = 32/317 (10%)

Query: 61  RHLLNQH---FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTL 116
           R +L++     +     +++   + DG RK+L   P       + +ETV IP   +   +
Sbjct: 45  RSVLDEVDALATPGELRLLESVDAKDGFRKYLFELPD-----GLRVETVRIPLYDTHHVV 99

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           C+SSQ GC+L C+FC T    L R+L + E++ Q+L  R                     
Sbjct: 100 CLSSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAVR-----------------ADSE 142

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEI 235
           R I+ +V MG GEP  N+D V  +     D  G     RRI++ST+G VP I R   E  
Sbjct: 143 RPITGVVFMGQGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGH 202

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              L ISL+A     R  L+P+ + +PL+ L++A R +  L    R+T EYVM+ G+N  
Sbjct: 203 KFRLCISLNAAMPWKRRALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVG 260

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTP 353
             DA  L ++L GIP ++N I  N   G  Y   D+ +   F + + R   G     R  
Sbjct: 261 EEDAAALGRLLAGIPVRLNPIAVNDASGR-YRPPDEDEWNAFRDALARELPGTPVVRRYS 319

Query: 354 RGLDILAACGQLKSLSK 370
            G D  AACG L S  +
Sbjct: 320 GGQDEHAACGMLASRRR 336


>gi|307826514|ref|ZP_07656687.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96]
 gi|307732443|gb|EFO03343.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96]
          Length = 271

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 108/282 (38%), Positives = 140/282 (49%), Gaps = 49/282 (17%)

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + CSFC+TG Q L RNLT  EI+ Q L A   L      E            +I NIV M
Sbjct: 1   MNCSFCFTGKQGLKRNLTTSEIVGQFLQAWRWLAKNRPGE-----------ERILNIVFM 49

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
           G GEPL NFD VKK+  I     G S   +RIT+ST+G++P + R  +EI  V LA+SLH
Sbjct: 50  GQGEPLHNFDAVKKACEIFLSKHGTSIGVQRITISTAGYIPGLKRWSQEIPGVNLALSLH 109

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP------------------------------ 274
           +   + RN L+PIN KYPL+ ++      P                              
Sbjct: 110 SPFEEKRNELIPINIKYPLDEVLATIDKIPLNKKQFITYEYILIKDFNDTPDDAXXXXEV 169

Query: 275 -------GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
                   L+  + IT+EY+++K  NDSP DA  L  IL G  A INLIPFN +PG  Y 
Sbjct: 170 LATIDKIPLNKKQFITYEYILIKDFNDSPDDAKKLGTILAGKSAYINLIPFNSFPGSHYK 229

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
             D   I  F E +      + IR+ +G D+LAACGQL S +
Sbjct: 230 RPDLDKIEKFKEVLDTFKIPTLIRSAKGDDVLAACGQLNSKN 271


>gi|255024245|ref|ZP_05296231.1| hypothetical protein LmonocyFSL_13899 [Listeria monocytogenes FSL
           J1-208]
          Length = 220

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 87/217 (40%), Positives = 132/217 (60%), Gaps = 6/217 (2%)

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232
            ++  ++S++V+MG+GEP  N+DNV   L + +   GL+   R IT+STSG  P I    
Sbjct: 2   RNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFA 61

Query: 233 -EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
            E+  V LAISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N  RITFEY+MLKG
Sbjct: 62  NEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKG 120

Query: 292 INDSPRDALNLIKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSS 348
           +ND  ++AL L  +L      A +NLIP+NP     +Y  S ++D++ F + +K++G + 
Sbjct: 121 VNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINC 180

Query: 349 PIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
            IR   G DI AACGQL+S   KR+    R + +   
Sbjct: 181 VIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAA 217


>gi|330503480|ref|YP_004380349.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
           mendocina NK-01]
 gi|328917766|gb|AEB58597.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
           mendocina NK-01]
          Length = 346

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 102/375 (27%), Positives = 169/375 (45%), Gaps = 44/375 (11%)

Query: 12  MMREELEEALLKIGIPQRHVRM--RTSQIWKWIYVR----GIRDFQGMSDISQEVRHLLN 65
           M   EL   L  +G   +H+    R      W+  +    G +  +  + +   VR  L 
Sbjct: 1   MQLSELNHRLAALGAKPQHIGRITRA-----WLQGKALDTGTKHQKTENFLPLTVREGLP 55

Query: 66  QHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
              + +     +  E    DG+ + L+    R       +E+V +P   R  LC+SSQVG
Sbjct: 56  AISASLEQLARVSTEHPGADGSSRLLVELADR-----QMVESVLLP---RDGLCISSQVG 107

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C+FC TG   L+R L++ E++ QV+L R                     R +  +V
Sbjct: 108 CAVGCTFCMTGKSGLLRQLSSAEMVAQVVLGRRR-------------------RAVKKVV 148

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242
            MGMGEP  N DNV +++ +     G     R +  ST G      R+  + +   LA+S
Sbjct: 149 FMGMGEPAHNLDNVLEAIDLLGTEGG--IGHRNLVFSTVGDPRVFERLPRQRVRPALALS 206

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH    +LR  L+P   +   E L++    Y   +    I +++ +LKGINDS ++  N+
Sbjct: 207 LHTTDAELRQRLLPRAPRIDPEQLMELGEAY-ARAIDYPIQYQWTLLKGINDSQQEMDNI 265

Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           +++ KG  A +NLIP+N     EY   + + IV     +   G  + +R   G D+   C
Sbjct: 266 LRLFKGKFAVLNLIPYNSLEADEYRRPEGERIVEMVRYLHSRGVLTKVRNSAGQDVDGGC 325

Query: 363 GQLKSLSKRIPKVPR 377
           GQL++ +  +    R
Sbjct: 326 GQLRARAVDVINTSR 340


>gi|319795747|ref|YP_004157387.1| radical SAM protein [Variovorax paradoxus EPS]
 gi|315598210|gb|ADU39276.1| Radical SAM domain protein [Variovorax paradoxus EPS]
          Length = 356

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/362 (26%), Positives = 155/362 (42%), Gaps = 38/362 (10%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL----NQH 67
           M   EL+  L + G    H + R  ++W     R        S     +   L     + 
Sbjct: 1   MRIHELKRRLREAGAGPSHEQ-RILRLWSHALPRDSGRRLPHSFFPSSLMEALPAIEAEL 59

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             +    I       DG+ + L+      +     +E+V +P   R  LCVSSQVGC++ 
Sbjct: 60  AGLAR--IHTVHPGADGSERLLV-----ALADGQTVESVLLP---RDGLCVSSQVGCAVG 109

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG   L+R + + EI+ QV LAR                     RK+  +V MGM
Sbjct: 110 CQFCMTGRDGLLRQVGSAEIIAQVALAR-------------------TRRKVRKVVFMGM 150

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEP  N DNV +++ +       +   + +  ST G      R+ +E +   LA+SLH  
Sbjct: 151 GEPAHNLDNVMEAIELLGTVG--NIGHKNLVFSTVGDPRAFERLQQERVKPALALSLHTT 208

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
              LR  L+P       E L+DA   Y   +    I +++ +L+G+ND   +   ++K+L
Sbjct: 209 KAGLRKTLLPRAPNMTPEELVDAGERYARAT-GYPIQYQWALLEGVNDGQDEIEGIVKLL 267

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            G    +N+IPFN   G  +     +     +  + + G  + +R   G D+   CGQL+
Sbjct: 268 SGKYGVLNMIPFNAVEGVAFSRPSWERCEAMARTLHQRGILTKLRDSAGQDVDGGCGQLR 327

Query: 367 SL 368
           + 
Sbjct: 328 AR 329


>gi|239820673|ref|YP_002947858.1| Radical SAM domain protein [Variovorax paradoxus S110]
 gi|239805526|gb|ACS22592.1| Radical SAM domain protein [Variovorax paradoxus S110]
          Length = 351

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 159/375 (42%), Gaps = 38/375 (10%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL----NQH 67
           M   EL++ L + G    H + R  ++W     R        S     +   L     + 
Sbjct: 1   MRIHELKQRLREAGAGPSHEQ-RILRLWSHALPRNSGRRLPESFFPSSLLAALPAIEAEL 59

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
             +    I       DG+ + L+      +     +E+V +P   R  LCVSSQVGC++ 
Sbjct: 60  AGLAR--IHAVHPGADGSERLLV-----ALADGQTVESVLLP---RDGLCVSSQVGCAVG 109

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG   L+R + + EI+ QV LAR                   + R +  +V MGM
Sbjct: 110 CRFCMTGRDGLLRQVGSAEIIAQVALAR-------------------MRRPVRKVVFMGM 150

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAV 246
           GEP  N DNV +++ +       +   + +  ST G      R+ +  +   LA+SLH  
Sbjct: 151 GEPAHNLDNVMEAIELLGTVG--NIGHKNLVFSTVGDPRAFERLQQARVRPALALSLHTT 208

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
              LR  L+P       E L+ A   Y   +    I +++ +L G+ND P +   ++++L
Sbjct: 209 KAGLRKKLLPRAPNMTPEELVGAGERYARAT-GYPIQYQWTLLDGVNDGPEEIDGIVRLL 267

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            G    +N+IPFN   G  +     +     +  + + G  + +R   G D+   CGQL+
Sbjct: 268 SGKFGVLNMIPFNAVEGVAFSRPSLERCEQMARTLHQRGILTKLRHSAGQDVDGGCGQLR 327

Query: 367 SLSKRIPKVPRQEMQ 381
           + +     VP +  Q
Sbjct: 328 ARAAEARVVPIRFAQ 342


>gi|332527662|ref|ZP_08403707.1| ribosomal RNA large subunit methyltransferase N [Rubrivivax
           benzoatilyticus JA2]
 gi|332112064|gb|EGJ12040.1| ribosomal RNA large subunit methyltransferase N [Rubrivivax
           benzoatilyticus JA2]
          Length = 351

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 95/360 (26%), Positives = 153/360 (42%), Gaps = 38/360 (10%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVRHLLNQHFS--I 70
            EL + L  +G    H       +  W+  R       Q      + +   L   F    
Sbjct: 14  AELRQRLRALGAGPGHEE---RLLRNWVQCRAPTAGRGQAEHFYPRALYEALPALFDSLA 70

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
               +       DG  + L+      +G    +E+V +P   R  LCVS+QVGC++ C F
Sbjct: 71  ALATLRSAHPGEDGAERLLV-----GLGDGQTVESVLLP---RDGLCVSTQVGCAVGCVF 122

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TG   L+R L + EI+ QV+LAR                     R +S +V MGMGEP
Sbjct: 123 CMTGRDGLLRQLGSAEIVAQVVLARQR-------------------RSVSKVVFMGMGEP 163

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSND 249
             N D V +++ +   + G     + +  ST G      R+    +   LA+SLH    +
Sbjct: 164 SHNLDAVLEAIDLLGTAGG--IGHKNLVFSTVGDTRAFERLPLGRVKPALALSLHTTKAE 221

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
           LR  L+P   K   E +++A   Y   +    I +++ +L GIND   +   + ++L G 
Sbjct: 222 LRERLLPRAPKIAPEEIVEAGERYARAT-GYPIQYQWTLLDGINDGDDEVDAIARLLAGR 280

Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
            A +NLIP+N   G  +     +     +  + R G  + +R   G D+   CGQL++ +
Sbjct: 281 YAMMNLIPYNETEGDGFRRPPWERAAEMARALGRRGVLTRLRRSAGQDVAGGCGQLRARA 340


>gi|317405650|gb|EFV85949.1| ribosomal RNA large subunit methyltransferase N 1 [Achromobacter
           xylosoxidans C54]
          Length = 348

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 162/378 (42%), Gaps = 51/378 (13%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWI---------YVRGIRDFQGMSDISQEVRH 62
           M   + ++ L  +G    H   R   +  W+         + R   ++     +   +R 
Sbjct: 1   MRYSDFDQRLAALGAQPAH---RGRVMRAWLTGQAFDSDTWRRRFDNY-----LPLALRE 52

Query: 63  LLNQ-HFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
            L      +     +  E    DG+R  L+            +E+V +P   R  LCVS+
Sbjct: 53  ALPALSAELDGLARVRSEHAGHDGSR-LLVDL-----ADGQMVESVLLP---RDGLCVST 103

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           QVGC++ C FC TG   L+R + + EIL QV+LAR                     R + 
Sbjct: 104 QVGCAVGCRFCMTGKSGLIRQVASMEILAQVVLARRQ-------------------RAVK 144

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
            +V MGMGEP  N DNV +++++       +   + +  ST G       +  +     L
Sbjct: 145 KVVFMGMGEPAHNLDNVLEAINLLGTEG--NIGHKNLVFSTVGDPRVFEALPRQPVKPAL 202

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLH    +LR  L+P   K   + L++    Y   +    I +++ +LKG+ND   + 
Sbjct: 203 ALSLHTTRAELREHLLPRAPKIAPQDLVEMGERYARDT-GYPIQYQWTLLKGVNDGDDEL 261

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
             + ++LKG    +N+IPFN   G +Y   + + I      + R G  + +R   G D+ 
Sbjct: 262 DAIPRLLKGKFGVLNVIPFNSLEGDDYQRPETERIREIVRILHRRGVLTKVRNSAGQDVD 321

Query: 360 AACGQLKSLSKRIPKVPR 377
             CGQL++ +    +V R
Sbjct: 322 GGCGQLRARAVGAERVVR 339


>gi|302877910|ref|YP_003846474.1| radical SAM domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302580699|gb|ADL54710.1| radical SAM domain protein [Gallionella capsiferriformans ES-2]
          Length = 336

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 101/361 (27%), Positives = 165/361 (45%), Gaps = 40/361 (11%)

Query: 17  LEEALLKIGIPQRHVR--MRT-SQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ-HFSIIY 72
           L   L ++G    H    +R  SQI    Y R              VR  L      +  
Sbjct: 6   LIRRLRELGSKPCHEDRLLRGWSQIAS--YDRKNSPADNF--FPAAVRAELPAIEAELTG 61

Query: 73  P-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
             ++  E  + +G  + L+            +E+V +P   RG LC+S+QVGC++ C FC
Sbjct: 62  LAKLHGEYPAGEGVARLLVEL-----ADGQMVESVLLP---RGGLCISTQVGCAVGCVFC 113

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
            +G   L+R L + EI+ QV+LAR                     R++S +V MGMGEP 
Sbjct: 114 MSGRNGLIRQLGSAEIVAQVVLARRR-------------------REVSKVVFMGMGEPA 154

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDL 250
            N DNV +++ +       +   + +  ST G +    R+  E +   LA+SLH     L
Sbjct: 155 HNLDNVLEAIQLLGTQG--NIGHKNLVFSTVGDLRVFERLPTETVKPALALSLHTTDAIL 212

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           R  L+P      +E L+    HY  ++ +  + +++ +++G+NDS  +   ++++L G  
Sbjct: 213 RARLLPSAPVIAIEELVSLAEHYARIT-SYPVQYQWTLIEGVNDSDAELDGIVRLLAGKY 271

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           A +N IPFN   G +Y     + I   +  +KR G    IR   G +I  ACGQL++ + 
Sbjct: 272 AVMNFIPFNEVDGLDYRRPSTERIAAMAYALKRQGVLVKIRDSAGQEIEGACGQLRARAI 331

Query: 371 R 371
           R
Sbjct: 332 R 332


>gi|156089225|ref|XP_001612019.1| radical SAM domain containing protein [Babesia bovis]
 gi|154799273|gb|EDO08451.1| radical SAM domain containing protein [Babesia bovis]
          Length = 336

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 100/332 (30%), Positives = 159/332 (47%), Gaps = 38/332 (11%)

Query: 31  VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKW 88
              R SQI + +Y     ++  M  I + VR  L+ HF  S++  +      S D   K 
Sbjct: 25  AGYRLSQILRSVYSAKSSNYLEMYHIPKHVREELHDHFGGSLLSLKPTTSTKS-DRACKV 83

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L     +      ++E V +   +  +LC+SSQVGC+  C+FC TG   L RNL+ +EI 
Sbjct: 84  LFENRDKS-----KVEAVLLSFPTHKSLCISSQVGCAYACAFCATGRIGLKRNLSVDEIT 138

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            QVL  R                    G +I +I  MGMGEPL N  NV ++++I SD+ 
Sbjct: 139 DQVLYFRQ------------------NGHQIDSISFMGMGEPLSN-PNVFRAINILSDND 179

Query: 209 GLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
             + S RR+ +ST G +P + ++  +   V LA S+H+   D RN LVP+N+ YP   + 
Sbjct: 180 LFAMSSRRLNISTVGILPGLKKLNRDHPHVNLAFSMHSPFTDQRNKLVPVNQLYPFRDVF 239

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP------AKINLIPFNPW 321
           +       L+   RI   Y+++KG ND+   A  L+K++   P        +NLIP+N  
Sbjct: 240 ELLDERIRLTGK-RIWISYILIKGENDTREHAEELVKVISNRPDEIRYLYHVNLIPYNTV 298

Query: 322 PGC-EYLCSDQKDIVTFS--ECIKRSGYSSPI 350
               ++  ++   I TF   + + R+     +
Sbjct: 299 KSICKFERTEDNVIDTFKITKQLTRAHCLVGV 330


>gi|220919464|ref|YP_002494768.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957318|gb|ACL67702.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 338

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 102/317 (32%), Positives = 151/317 (47%), Gaps = 32/317 (10%)

Query: 61  RHLLNQH---FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTL 116
           R +L++     +     +++   + DG RK+L   P       + +ETV IP   +   +
Sbjct: 45  RSVLDEVDALATPGELRLLEAVDARDGFRKYLFELPD-----GLRVETVRIPLFDTHHVV 99

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           C+SSQ GC+L C+FC T    L R+L + E++ Q+L  R                     
Sbjct: 100 CLSSQAGCALGCAFCATAKLGLDRSLRSWEMVAQLLAVR-----------------ADSE 142

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEI 235
           R I+ +V MG GEP  N+D V  +     D  G     RRI++ST+G VP I R   E  
Sbjct: 143 RPITGVVFMGQGEPFLNYDEVLTAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGH 202

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              L ISL+A     R  L+P+ + +PL+ L++A R +  L    R+T EYVM+ G+N  
Sbjct: 203 KFRLCISLNAAMPWKRRALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVG 260

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTP 353
             DA  L ++L GIP ++N I  N   G  Y   D+ +   F + + R   G     R  
Sbjct: 261 EEDAAALGQLLAGIPVRLNPIAVNDASGR-YCPPDEDEWNAFRDALARELPGTPVVRRYS 319

Query: 354 RGLDILAACGQLKSLSK 370
            G D  AACG L S  +
Sbjct: 320 GGQDEHAACGMLASRRR 336


>gi|325114363|emb|CBZ49920.1| radical SAM enzyme, Cfr family, related [Neospora caninum
           Liverpool]
          Length = 512

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/297 (30%), Positives = 134/297 (45%), Gaps = 38/297 (12%)

Query: 106 VYIPEKS--RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           V  P KS  R T+C+S+QVGC + C+FC TGT    RNL   EIL Q+  A  +      
Sbjct: 80  VARPFKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV------ 133

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
                         KI NIV MGMGEPL N++NV  S+   +     +     + +ST G
Sbjct: 134 -------------EKIRNIVFMGMGEPLDNYNNVVASVRFMTQPNKFAIGGHHVCISTVG 180

Query: 224 FVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARR 281
               I ++  ++    LA+SLHA     R  L+P     + L+ ++DA   +        
Sbjct: 181 LPHRIRQLASDLPTCRLALSLHAPDQPTRLKLMPRAAAGWKLDRVLDATDEFVKQQKRVN 240

Query: 282 IT--------FEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSD 330
            T         EY+M++ +ND+   A  L +IL  +     +NLIP+NP     +Y  S 
Sbjct: 241 STAMKNIGLLVEYIMIQDVNDTIDQAHALGRILQPRADAVIVNLIPYNPTEVPYDYKPST 300

Query: 331 QKDIVTFSECIK-RSGYSSPIRTPRGLDILAACGQL---KSLSKRIPKVPRQEMQIT 383
            + +  F   ++        +R   G DI +ACGQL       K   KVP +  + +
Sbjct: 301 PERVDEFLRILRQDYSIKVLVRQTLGQDIDSACGQLVVRAGKDKSGEKVPERVARAS 357


>gi|197124743|ref|YP_002136694.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter
           sp. K]
 gi|196174592|gb|ACG75565.1| Radical SAM domain protein [Anaeromyxobacter sp. K]
          Length = 338

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 102/317 (32%), Positives = 151/317 (47%), Gaps = 32/317 (10%)

Query: 61  RHLLNQH---FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTL 116
           R +L++     +     +++   + DG RK+L   P       + +ETV IP   +   +
Sbjct: 45  RSVLDEVDALATPGELRLLEAVDARDGFRKYLFELPD-----GLRVETVRIPLFDTHHVV 99

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           C+SSQ GC+L C+FC T    L R+L + E++ Q+L  R                     
Sbjct: 100 CLSSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAVR-----------------ADSE 142

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEI 235
           R I+ +V MG GEP  N+D V  +     D  G     RRI++ST+G VP I R   E  
Sbjct: 143 RPITGVVFMGQGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGH 202

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              L ISL+A     R  L+P+ + +PL+ L++A R +  L    R+T EYVM+ G+N  
Sbjct: 203 KFRLCISLNAAMPWKRRALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVG 260

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTP 353
             DA  L ++L GIP ++N I  N   G  Y   D+ +   F + + R   G     R  
Sbjct: 261 EEDAAALGQLLAGIPVRLNPIAVNDASGR-YRPPDEDEWNAFRDALARELPGTPIVRRYS 319

Query: 354 RGLDILAACGQLKSLSK 370
            G D  AACG L S  +
Sbjct: 320 GGQDEHAACGMLASRRR 336


>gi|217969807|ref|YP_002355041.1| ribosomal RNA large subunit methyltransferase N [Thauera sp. MZ1T]
 gi|217507134|gb|ACK54145.1| Radical SAM domain protein [Thauera sp. MZ1T]
          Length = 347

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 162/367 (44%), Gaps = 41/367 (11%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF---QGMSDISQEVRHLLNQ-H 67
           M  E+L   L  +G    H       +  W+      D       + + + ++  L +  
Sbjct: 1   MEIEQLRLRLRALGARPSHE---ARLLRAWL-QGHALDAGPRTESNRLPKALQAALPELE 56

Query: 68  FSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
             +     +  E    DGTR  L+            +E+V +P   R  LCVS+QVGC++
Sbjct: 57  AELGALARVRSEHPGEDGTR-LLVEL-----ADAQAVESVLLP---RDGLCVSTQVGCAV 107

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C FC TG   L+R L + EI+ QV LAR L                   R++  +V MG
Sbjct: 108 GCVFCMTGKDGLLRQLDSGEIVAQVALARRL-------------------RRVHKVVFMG 148

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245
           MGEP  N D V +++ +       +   + + LST G +    R+ +  +   LA+SLH+
Sbjct: 149 MGEPAHNLDAVIEAIELLGTEG--ALPHKNLVLSTVGDLRVFERLPQMRVKPALALSLHS 206

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
               LR  L+P   +     L++    +   S    I +++ +++G+ND   +   ++++
Sbjct: 207 TRAALRAALLPRAPRIDPAELVELGEAWARAS-GYPIQYQWTLIEGVNDGEDELEGIVRL 265

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           L G  A +N+IPFN   G +Y     +     +  + R+G  + +R   G D+   CGQL
Sbjct: 266 LAGKYAVMNMIPFNRVDGLDYRRPAAESAAEIARRLHRAGILTKLRQSAGQDVDGGCGQL 325

Query: 366 KSLSKRI 372
           ++   ++
Sbjct: 326 RAREAKL 332


>gi|153007216|ref|YP_001381541.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter
           sp. Fw109-5]
 gi|205829649|sp|A7HIL1|Y4379_ANADF RecName: Full=Probable RNA methyltransferase Anae109_4379
 gi|152030789|gb|ABS28557.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 336

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 104/313 (33%), Positives = 146/313 (46%), Gaps = 29/313 (9%)

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSS 120
             +    +      V    + DG R++LL       G    +E V IP   +  T+C+SS
Sbjct: 49  DRVEALATPGELRRVACTDAKDGFRRYLLEL-----GDGARVEAVRIPLFDTHHTVCLSS 103

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC+L CSFC TG   L R+L A EI+ Q+L  R                     R I+
Sbjct: 104 QAGCALGCSFCATGALGLARSLRAWEIVAQLLHVR-----------------ADSTRPIT 146

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVML 239
            +V MG GEP  N+D V ++     D  G     RRI++ST+G VP I R   E     L
Sbjct: 147 GVVFMGQGEPFLNYDAVLEAAYTLCDPAGGRIDGRRISISTAGVVPMIRRYTAEGHKFRL 206

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            +SL+A     R  L+PI   +PL+ L+DA R +       R+T EYVM+ G+N    DA
Sbjct: 207 CVSLNAAIPWKRRALMPIEEGFPLDELVDAVREHAAQRG--RVTLEYVMIAGVNTGDEDA 264

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTPRGLD 357
             L ++L GIP ++N I  N   G  +   D+ +   F + + R   G     R   G D
Sbjct: 265 AALGRLLAGIPVRLNPIAVNDATGR-HRPPDEAEWNAFRDALARELPGQPIVRRYSGGQD 323

Query: 358 ILAACGQLKSLSK 370
             AACG L S ++
Sbjct: 324 EHAACGMLSSRTR 336


>gi|323452575|gb|EGB08449.1| hypothetical protein AURANDRAFT_64082 [Aureococcus anophagefferens]
          Length = 399

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 111/361 (30%), Positives = 165/361 (45%), Gaps = 39/361 (10%)

Query: 34  RTSQIWKWIYVRGIRDF---QGMSDISQEVRHLLNQHFSIIY-PEIVDEKISCDGTRKWL 89
           RT  +WK +  R  RD    +   ++S+  R  L   +         D + + DGT K L
Sbjct: 58  RTRSVWKAL--REGRDPCVQEETPELSRWTRETLTAAYGSGADARCADARTAEDGTTKLL 115

Query: 90  LRFPARCIGGPVEIETVYIPEKSRG----TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145
           + F  R       +E V IP+ +RG    TLCVSSQVGC++ C+FC TG   L+R+LT +
Sbjct: 116 VEFGDRD-----AVEAVLIPQLTRGKATSTLCVSSQVGCAMGCAFCATGKMGLIRSLTDD 170

Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           EI  Q+ LA       P                + +IV MGMG+   N  + K +    +
Sbjct: 171 EIAAQLWLALRAARSVPDLP------------PLRSIVFMGMGDAGTNPKHAKAAAECFT 218

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
           D     FS+ R+TLST G  P+           LA S+HAV  DLR  LVP     P  +
Sbjct: 219 DPDRFGFSRHRLTLSTVGPSPSAFLALAAAPGQLAWSVHAVDADLRKRLVPTAAWEPEAL 278

Query: 266 ---LIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLI 316
              L+DA R    + +  R +     +L G+NDS   A  L + ++ + A      ++LI
Sbjct: 279 RDGLLDALRATRPMHSKERSVMLAVTLLAGVNDSLEHARALAEFVQPVRAETPRLIVDLI 338

Query: 317 PFNPWPGCE-YLCSDQKDIVTFSECIKRS--GYSSPIRTPRGLDILAACGQLKSLSKRIP 373
           P+NP    + +       +  F   +K    G    +R  RG D  AACGQL + +++  
Sbjct: 339 PYNPIDAADAFQRPSFDAVSAFQRELKAHAPGLFIGVRNARGDDEAAACGQLATNAQKRR 398

Query: 374 K 374
           +
Sbjct: 399 R 399


>gi|311106735|ref|YP_003979588.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310761424|gb|ADP16873.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
           xylosoxidans A8]
          Length = 351

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 97/366 (26%), Positives = 162/366 (44%), Gaps = 43/366 (11%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR----GIRDFQGMSDISQEVRHL---L 64
           M   + ++ L  +G    H   R   +  W+  +    G R       +   +R     L
Sbjct: 1   MRYSDFDQRLAALGALPVH---RGRILRVWLQGQALDTGTRRRSSEHFLPLALRDAVPVL 57

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                 +   +  E    DG+R  L+            +E+V +P   R  LCVS+QVGC
Sbjct: 58  TAELDALA-RVRSEHAGNDGSR-LLVEL-----ADGQMVESVLLP---RDGLCVSTQVGC 107

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
           ++ C FC TG   L+R +T+ EIL QV+LAR                     R +  +V 
Sbjct: 108 AVGCRFCMTGKSGLIRQVTSMEILAQVVLARRQ-------------------RAVKKVVF 148

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
           MGMGEP  N DNV +++ +       +   + +  ST G +     + ++ +   LA+SL
Sbjct: 149 MGMGEPAHNLDNVLEAIDLLGTEG--NIGHKNLVFSTVGDLRVFEALPQQRVKPALALSL 206

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H    +LR  L+P   +   E LI+    Y   ++   I +++ +LK IND   +   ++
Sbjct: 207 HTTKAELRAHLLPRAPRIAPEELIELGERYARDTD-YPIQYQWTLLKDINDGDDELDAVV 265

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
           ++LKG    +N+IPFN   G +Y   D + I      ++  G  + +R   G D+   CG
Sbjct: 266 RLLKGKYGVLNVIPFNSLEGDDYQRPDTERIHEIVRSLQSRGVLTKVRNSAGQDVDGGCG 325

Query: 364 QLKSLS 369
           QL++ +
Sbjct: 326 QLRARA 331


>gi|320104471|ref|YP_004180062.1| Radical SAM domain-containing protein [Isosphaera pallida ATCC
           43644]
 gi|319751753|gb|ADV63513.1| Radical SAM domain protein [Isosphaera pallida ATCC 43644]
          Length = 373

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 104/326 (31%), Positives = 151/326 (46%), Gaps = 30/326 (9%)

Query: 50  FQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYI 108
           +       + +   L+Q   +   ++   ++S  D   K L R         + +ETV I
Sbjct: 63  WASRRRFPRRLLEGLDQ---LPRLKLESIQVSPRDRFEKLLFRTND-----GLPVETVLI 114

Query: 109 P--EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
           P  +++  +LCVSSQ GC + C+FC T      RNL A EI+ Q+L AR           
Sbjct: 115 PLHKENAVSLCVSSQSGCPMACAFCATARLSRRRNLAAWEIVDQILQAR----------- 163

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
                +   GR+++  V MGMGEP  N+D V  +  I    +GL+ + + IT+ST G V 
Sbjct: 164 ---ARVELQGRRVTGCVFMGMGEPFLNYDRVMTAAEILRSPIGLAVNAKAITISTVGLVA 220

Query: 227 NIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
            I R   E+    L+ISL A  +  R  LVP+  + PL  LI A R +       RI   
Sbjct: 221 EIDRFTREQRPYRLSISLGAADDATRAQLVPVAARTPLRELIAAARRHQHQRGG-RINLS 279

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS- 344
           YV +  +N S  DA NL ++L+G+P + NLI     P   +         TF + ++R  
Sbjct: 280 YVCIANLNTSETDARNLGRLLEGLPVRFNLIDV-TDPTGRFHPPSPAQWNTFRDALRRHL 338

Query: 345 -GYSSPIRTPRGLDILAACGQLKSLS 369
            G     R   G DI AACG L   S
Sbjct: 339 PGQPIVRRYSGGADIQAACGTLAGTS 364


>gi|23004907|ref|ZP_00047999.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum
           magnetotacticum MS-1]
          Length = 232

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/242 (38%), Positives = 129/242 (53%), Gaps = 16/242 (6%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
              R TLCVSSQ GC + C FC TG   L RNL+  EI+ QV  A   L D         
Sbjct: 1   YPQRSTLCVSSQAGCGMACPFCATGQLGLTRNLSVAEIVEQVRSAARSLAD--------- 51

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPN 227
             IP    +++N+V MGMGEPL N+  V  ++         GL  S R IT+ST G VP 
Sbjct: 52  GEIPGGPARLNNLVFMGMGEPLANYKAVMGTVRRLVAPAPDGLGMSARNITVSTVGLVPA 111

Query: 228 IARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
           + ++ +E I V LA+SLHA  +DLR+ LVPIN ++ ++  +DA RHY  ++   R++ EY
Sbjct: 112 MRKLADEGIPVTLALSLHAPDDDLRSELVPINTRWSVDETLDAARHYFEVTGR-RVSIEY 170

Query: 287 VMLKGINDSPRDALNLIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343
            ++K +ND    A  L + L  +G     +N IP NP PG  +  SD      F   ++ 
Sbjct: 171 ALIKDMNDHAWRADLLGEKLNARGRGWVHVNPIPLNPTPGSIWTGSDPAVEAEFVARLRG 230

Query: 344 SG 345
            G
Sbjct: 231 HG 232


>gi|255632735|gb|ACU16719.1| unknown [Glycine max]
          Length = 245

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/243 (31%), Positives = 128/243 (52%), Gaps = 24/243 (9%)

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TG+     NL++ EI+ Q++ A                   S   +I N+V M
Sbjct: 1   MGCNFCATGSMGFKNNLSSGEIVEQLVHA-------------------STFSQIRNVVFM 41

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244
           GMGEPL N+  V +++ I +  +    S +RIT+ST G +  I ++ +++  + LA+SLH
Sbjct: 42  GMGEPLNNYSAVVEAVRIMT-GLPFQLSSKRITISTVGIIHAINKLHDDLPGLNLAVSLH 100

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           A + D+R  ++P  R +PL  L+D+ + Y   S   +I  EY+ML G+ND    A  L K
Sbjct: 101 APAQDIRCQIMPAARAFPLGKLMDSLQVYQRKSLQ-KIFIEYIMLDGVNDEEHHAHLLGK 159

Query: 305 ILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILAAC 362
           +L+     +NLIPFN      ++  + ++ +  F + ++      + +R   G DI  AC
Sbjct: 160 LLETFQVVVNLIPFNSIGTLSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGRDISGAC 219

Query: 363 GQL 365
           GQL
Sbjct: 220 GQL 222


>gi|187478042|ref|YP_786066.1| ribosomal RNA large subunit methyltransferase N [Bordetella avium
           197N]
 gi|123752381|sp|Q2L1Z5|Y1540_BORA1 RecName: Full=Probable RNA methyltransferase BAV1540
 gi|115422628|emb|CAJ49153.1| radical SAM protein [Bordetella avium 197N]
          Length = 351

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/317 (27%), Positives = 144/317 (45%), Gaps = 34/317 (10%)

Query: 56  ISQEVRHLLNQ-HFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR 113
           +   +R  L      +     +  E    DG+R  L+      +     +E+V +P   R
Sbjct: 46  LPLALREALPALTAELDGLARVHSEHAGSDGSR-LLV-----ALADGQMVESVLLP---R 96

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
             LCVS+QVGC++ C FC TG   L+R +T+ EIL QV+LAR                  
Sbjct: 97  DGLCVSTQVGCAVGCRFCMTGKSGLIRQVTSMEILAQVVLARRR---------------- 140

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
              R +  +V MGMGEP  N +NV +++++       +   + +  ST G       + +
Sbjct: 141 ---RAVKKVVFMGMGEPAHNLENVLEAINLLGTEG--NIGHKNLVFSTVGDRRVFEALPQ 195

Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           + +   LA+SLH    +LR  L+P       + L++    Y        I +++ +LKG+
Sbjct: 196 QRVKPALALSLHTTKAELRARLLPRAPSIAPDELVELGERY-ARHIGYPIQYQWTLLKGV 254

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352
           ND   +   ++++LKG    +N+IPFN   G +Y   D + I      +   G    +R 
Sbjct: 255 NDGNDELDAVLRLLKGKYGVLNVIPFNSLEGDDYQRPDLERIREIVRYVHSRGVLVKVRN 314

Query: 353 PRGLDILAACGQLKSLS 369
             G D+   CGQL++ +
Sbjct: 315 SAGQDVDGGCGQLRARA 331


>gi|237840861|ref|XP_002369728.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
 gi|211967392|gb|EEB02588.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
          Length = 619

 Score =  245 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 82/279 (29%), Positives = 127/279 (45%), Gaps = 33/279 (11%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
                 R T+C+S+QVGC + C+FC TGT    RNL   EIL Q+  A  +         
Sbjct: 208 LYKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------- 258

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
                       I NIV MGMGEPL N+++V  S+   +     +    R+ +ST G   
Sbjct: 259 ----------ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPH 308

Query: 227 NIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRIT- 283
            I ++  ++    LA+SLHA     R  L+P     + LE +++A   +         T 
Sbjct: 309 KIRQLASDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTG 368

Query: 284 -------FEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKD 333
                   EY+M++ +ND+   A  L +IL  +     +NLIP+NP     +Y  S Q+ 
Sbjct: 369 MKNIGLLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQER 428

Query: 334 IVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSLSKR 371
           +  F   +++       +R   G DI +ACGQL   + +
Sbjct: 429 VDDFLTILRKEYAIKVLVRQTLGQDIDSACGQLVVRAGQ 467



 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD-GTRKWLLRF 92
              +IW+++  + ++DF+ + D+ + +   L ++F +    ++  K S D  T K LL F
Sbjct: 59  HAQKIWRYVVQKNVQDFREIPDLPRRLYATLAENFCLHASRVLRTKTSRDRSTTKLLLEF 118

Query: 93  PARCIGGPVEIETVYIPEK 111
           P        +IET  +   
Sbjct: 119 PD-----GSQIETCIMRYG 132


>gi|95007443|emb|CAJ20664.1| hypothetical protein, conserved [Toxoplasma gondii RH]
          Length = 641

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 82/279 (29%), Positives = 127/279 (45%), Gaps = 33/279 (11%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
                 R T+C+S+QVGC + C+FC TGT    RNL   EIL Q+  A  +         
Sbjct: 230 LYKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------- 280

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
                       I NIV MGMGEPL N+++V  S+   +     +    R+ +ST G   
Sbjct: 281 ----------ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPH 330

Query: 227 NIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRIT- 283
            I ++  ++    LA+SLHA     R  L+P     + LE +++A   +         T 
Sbjct: 331 KIRQLASDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTG 390

Query: 284 -------FEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKD 333
                   EY+M++ +ND+   A  L +IL  +     +NLIP+NP     +Y  S Q+ 
Sbjct: 391 MKNIGLLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQER 450

Query: 334 IVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSLSKR 371
           +  F   +++       +R   G DI +ACGQL   + +
Sbjct: 451 VDDFLTILRKEYAIKVLVRQTLGQDIDSACGQLVVRAGQ 489



 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 44  VRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVE 102
            + ++DF+ + D+ + +   L ++F +    ++  K S D  T K LL FP        +
Sbjct: 100 QKNVQDFREIPDLPRRLYATLAENFCLHASRVLQTKTSRDRSTTKLLLEFPD-----GSQ 154

Query: 103 IETVYIPEK 111
           IET  +   
Sbjct: 155 IETCIMRYG 163


>gi|171059188|ref|YP_001791537.1| ribosomal RNA large subunit methyltransferase N [Leptothrix
           cholodnii SP-6]
 gi|205829631|sp|B1Y6D6|Y2507_LEPCP RecName: Full=Probable RNA methyltransferase Lcho_2507
 gi|170776633|gb|ACB34772.1| Radical SAM domain protein [Leptothrix cholodnii SP-6]
          Length = 347

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 96/368 (26%), Positives = 159/368 (43%), Gaps = 48/368 (13%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIY-----VRGIRDFQGMSDISQEVR----H 62
           M  + + + L   G    H + R  +IW  +           DF     + Q VR     
Sbjct: 1   MRIDFIRQRLRAQGAKPCHEQ-RILRIWAQVLPTEGGRSRPDDF-----LPQAVRDAMPA 54

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LL     +       +    DG+ + L+            +E+V +P   R  LCVS+QV
Sbjct: 55  LLADLDGLARLR--SQHPGEDGSARLLVEL-----ADGQTVESVLLP---RDGLCVSTQV 104

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C FC TG + L+R + + EI+ QV+LAR                     R +  +
Sbjct: 105 GCAVGCVFCMTGREGLLRQVGSAEIVAQVVLARRQ-------------------RLVKKV 145

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241
           V MGMGEP  N DNV +++     +   +   + +  ST G      R+    +   LA+
Sbjct: 146 VFMGMGEPAHNLDNVMEAIDFLGTTG--AIGHKNLVFSTVGDPRVFERLPLGPVKPALAL 203

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH    DLR  L+P   +     L++    Y   + +  I +++ +L+GIND P +   
Sbjct: 204 SLHTTRADLRAQLLPRAPRMDPADLVERAEAYARAT-SYPIQYQWTLLEGINDGPDEVEG 262

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           ++++L G  A +N+IP+N  P   Y     +     +  + R G  + +R   G D+   
Sbjct: 263 IVRLLHGKYAVLNMIPYNTVPDLPYTRPSWEAAAALARTLHRRGILTKLRQSAGQDVEGG 322

Query: 362 CGQLKSLS 369
           CGQL++  
Sbjct: 323 CGQLRARE 330


>gi|221482944|gb|EEE21275.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
           GT1]
          Length = 482

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 82/279 (29%), Positives = 127/279 (45%), Gaps = 33/279 (11%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
                 R T+C+S+QVGC + C+FC TGT    RNL   EIL Q+  A  +         
Sbjct: 71  LYKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------- 121

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
                       I NIV MGMGEPL N+++V  S+   +     +    R+ +ST G   
Sbjct: 122 ----------ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPH 171

Query: 227 NIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRIT- 283
            I ++  ++    LA+SLHA     R  L+P     + LE +++A   +         T 
Sbjct: 172 KIRQLASDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTG 231

Query: 284 -------FEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKD 333
                   EY+M++ +ND+   A  L +IL  +     +NLIP+NP     +Y  S Q+ 
Sbjct: 232 MKNIGLLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQER 291

Query: 334 IVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSLSKR 371
           +  F   +++       +R   G DI +ACGQL   + +
Sbjct: 292 VDDFLTILRKEYAIKVLVRQTLGQDIDSACGQLVVRAGQ 330


>gi|221503269|gb|EEE28967.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
           VEG]
          Length = 619

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/279 (29%), Positives = 127/279 (45%), Gaps = 33/279 (11%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
                 R T+C+S+QVGC + C+FC TGT    RNL   EIL Q+  A  +         
Sbjct: 208 LYKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------- 258

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
                       I NIV MGMGEPL N+++V  S+   +     +    R+ +ST G   
Sbjct: 259 ----------ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPH 308

Query: 227 NIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRIT- 283
            I ++  ++    LA+SLHA     R  L+P     + LE +++A   +         T 
Sbjct: 309 KIRQLASDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTG 368

Query: 284 -------FEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKD 333
                   EY+M++ +ND+   A  L +IL  +     +NLIP+NP     +Y  S Q+ 
Sbjct: 369 MKNIGLLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQER 428

Query: 334 IVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSLSKR 371
           +  F   +++       +R   G DI +ACGQL   + +
Sbjct: 429 VDDFLTILRKEYAIKVLVRQTLGQDIDSACGQLVVRAGQ 467



 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 34  RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD-GTRKWLLRF 92
              +IW+++  + ++DF+ + D+ + +   L ++F +    ++  K S D  T K LL F
Sbjct: 59  HAQKIWRYVVQKNVQDFREIPDLPRRLYATLAENFCLHASRVLRTKTSRDRSTTKLLLEF 118

Query: 93  PARCIGGPVEIETVYIPEK 111
           P        +IET  +   
Sbjct: 119 PD-----GSQIETCIMRYG 132


>gi|205829718|sp|Q5P119|Y2870_AZOSE RecName: Full=Probable RNA methyltransferase AZOSEA28700
          Length = 354

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/364 (25%), Positives = 152/364 (41%), Gaps = 43/364 (11%)

Query: 12  MMREELEEALLKIGIPQRHVR--MRTSQIWKWIYV----RGIRDFQGMSDISQEVRHLLN 65
           M  + + + L   G    H +  +R      W +     RG    +         R    
Sbjct: 1   MRIDHIRQRLRASGAKPCHEQRVLRA-----WTHALPLDRGRCRSEDFFPAPLGARLPAL 55

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                   ++  E    DG R  L+            +E+V +P   R  LCVS+QVGC+
Sbjct: 56  GAELAALAQVRSEHAGEDGAR-LLVEL-----ADGQTVESVLLP---RDGLCVSTQVGCA 106

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TG   L+R L + EI+ QV+LARS                    R +  +V M
Sbjct: 107 VGCAFCMTGRDGLLRQLGSAEIVAQVVLARSR-------------------RAVRKVVFM 147

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           GMGEP  N DNV +++++     G     + +  ST G      R+ +  +   LA+SLH
Sbjct: 148 GMGEPAHNLDNVLEAIALLGTEGG--IGHKNLVFSTVGDRRVFERLPQGSVKPALALSLH 205

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
                LR  L+P   +     L++    Y   +    I +++ +L G+ND   +   +++
Sbjct: 206 TTRPALRTKLMPRAPRLDPAELVELGETYARAT-GYPIQYQWTLLAGVNDDDEELDGIVR 264

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L G  A +N IP+N   G  +     +     +  + R G  + +R   G D+   CGQ
Sbjct: 265 LLAGKYAVMNFIPYNSVAGAGFARPSWEHAAAMARYLHRRGILTKLRHSAGQDVDGGCGQ 324

Query: 365 LKSL 368
           L++ 
Sbjct: 325 LRAR 328


>gi|162452171|ref|YP_001614538.1| hypothetical protein sce3898 [Sorangium cellulosum 'So ce 56']
 gi|205829653|sp|A9EPV3|Y3898_SORC5 RecName: Full=Probable RNA methyltransferase sce3898
 gi|161162753|emb|CAN94058.1| hypothetical protein sce3898 [Sorangium cellulosum 'So ce 56']
          Length = 393

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 102/358 (28%), Positives = 156/358 (43%), Gaps = 51/358 (14%)

Query: 61  RHLLNQHF---SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIP--EKSRG 114
           R  L+       I    +V+ + S  D   K+  R           +E+V IP     R 
Sbjct: 40  RAALDAARSAGEIRTLALVERRASAEDPFVKYAFRLED-----GATVESVRIPLERPGRY 94

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           + CVSSQVGC+L C+FC TG   L RNL A EI+ QV L R            +      
Sbjct: 95  SACVSSQVGCALACAFCATGRMGLTRNLEAWEIVEQVRLIRR-----------DLDATVG 143

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
            G ++  ++  GMGEPL N D V +++ + S+    +   R IT+ T+G    I R+  E
Sbjct: 144 GGARVHGVLFQGMGEPLANADRVIQAIRVLSEPSAQAIDMRNITVCTAGLPSGIRRLAAE 203

Query: 235 IG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
           +  V L +SL +V    R +L+PI+  +PLE ++ A   +   S      + Y +L   N
Sbjct: 204 VPAVRLGLSLGSVRPGKRRLLMPIDGAHPLEEVLAAVGEHARASGHAP-MWAYTLLADQN 262

Query: 294 DSPRDALNLIKILKGIPA------KINLIPFNPW--PGCEYLCSD--------------Q 331
           D+  DA  L  + +G  A      +++LIP+N    PG      D               
Sbjct: 263 DTDEDAACLAALARGFAAQHGISPRLSLIPYNAIGAPGDPLPSPDGGDERGASADPFVRS 322

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK---SLSKRI--PKVPRQEMQITG 384
             +  F   +  +G  S +R   G D+ AACGQL    + ++R    + P +     G
Sbjct: 323 ARLDAFRAVLSAAGVGSIVRYSGGGDVGAACGQLARPSAEAQRPGGRRAPPRPGATAG 380


>gi|56478307|ref|YP_159896.1| ribosomal RNA large subunit methyltransferase N [Aromatoleum
           aromaticum EbN1]
 gi|56314350|emb|CAI08995.1| predicted Fe-S-cluster redox enzyme,radical SAM family [Aromatoleum
           aromaticum EbN1]
          Length = 397

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 92/364 (25%), Positives = 152/364 (41%), Gaps = 43/364 (11%)

Query: 12  MMREELEEALLKIGIPQRHVR--MRTSQIWKWIYV----RGIRDFQGMSDISQEVRHLLN 65
           M  + + + L   G    H +  +R      W +     RG    +         R    
Sbjct: 44  MRIDHIRQRLRASGAKPCHEQRVLRA-----WTHALPLDRGRCRSEDFFPAPLGARLPAL 98

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
                   ++  E    DG R  L+            +E+V +P   R  LCVS+QVGC+
Sbjct: 99  GAELAALAQVRSEHAGEDGAR-LLVEL-----ADGQTVESVLLP---RDGLCVSTQVGCA 149

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC TG   L+R L + EI+ QV+LARS                    R +  +V M
Sbjct: 150 VGCAFCMTGRDGLLRQLGSAEIVAQVVLARSR-------------------RAVRKVVFM 190

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           GMGEP  N DNV +++++     G     + +  ST G      R+ +  +   LA+SLH
Sbjct: 191 GMGEPAHNLDNVLEAIALLGTEGG--IGHKNLVFSTVGDRRVFERLPQGSVKPALALSLH 248

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
                LR  L+P   +     L++    Y   +    I +++ +L G+ND   +   +++
Sbjct: 249 TTRPALRTKLMPRAPRLDPAELVELGETYARAT-GYPIQYQWTLLAGVNDDDEELDGIVR 307

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +L G  A +N IP+N   G  +     +     +  + R G  + +R   G D+   CGQ
Sbjct: 308 LLAGKYAVMNFIPYNSVAGAGFARPSWEHAAAMARYLHRRGILTKLRHSAGQDVDGGCGQ 367

Query: 365 LKSL 368
           L++ 
Sbjct: 368 LRAR 371


>gi|307824710|ref|ZP_07654934.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
 gi|307734364|gb|EFO05217.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
          Length = 217

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 96/229 (41%), Positives = 129/229 (56%), Gaps = 13/229 (5%)

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
           +T  EI+ Q L A   L      E            +I NIV MG GEPL NFD VKK+ 
Sbjct: 1   MTTSEIVGQFLQAWRWLAKNRPGE-----------ERILNIVFMGQGEPLHNFDAVKKAC 49

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK 260
            I     G S   ++IT+ST+G++P + R  +EI  V LA+SLH+   + RN L+PIN+K
Sbjct: 50  EIFLSKHGTSIGVQKITISTAGYIPGLKRWSQEIPGVNLALSLHSPFEEKRNELIPINKK 109

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
           YPL+ ++      P L+  + IT+EY+++K  NDSP DA  L  IL G  A INLIPFN 
Sbjct: 110 YPLDEVLATIDKIP-LNKKQFITYEYILIKDFNDSPDDAKKLGTILAGKSAYINLIPFNS 168

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           +PG  Y   D   I  F E +      + IR+ +G D+LAACGQL S +
Sbjct: 169 FPGSHYKRPDLDKIEKFKEVLDTFKIPTLIRSAKGDDVLAACGQLNSKN 217


>gi|224014863|ref|XP_002297093.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968212|gb|EED86561.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 319

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 98/320 (30%), Positives = 141/320 (44%), Gaps = 49/320 (15%)

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE-----------------KSRGTLC 117
           +V    S DGT K LLR         +E+ETV IP                    R T+C
Sbjct: 20  LVHTSTSSDGTTKLLLRLMD-----GLEVETVLIPFWADVAQKKRINEKDNSSLGRTTVC 74

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           +SSQVGC   C+FC TG    +R+LT +EIL Q+  A+               V+  V  
Sbjct: 75  ISSQVGCRQGCTFCATGRMGKLRSLTTDEILAQLFYAKK--------------VVRVVLP 120

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            I+NIV MGMG+   N D VK +++I +      FS  R+T+ST    P       +   
Sbjct: 121 PITNIVAMGMGDAADNVDAVKGAINIMTRRELFQFSASRVTVSTVAPSPQAFLDFADSKC 180

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +LA S+HA  ++LR  LVP  + YP+  L             R    E  ++ G+NDS R
Sbjct: 181 ILAWSVHATRDELRKQLVPTTK-YPMVELRQGLIDALKQRKLRTCMIEVALMDGVNDSMR 239

Query: 298 DALNLIKILK-------GIPAKINLIPFNPWPG-----CEYLCSDQKDIVTFSECIKRSG 345
           +A  L + L        G     NLIP+N           Y     + ++ F + ++   
Sbjct: 240 EAEELAEFLTYITNEVPGSKLLCNLIPYNDIGEGAGGVVAYRKPSMEKVMAFQKRLQELS 299

Query: 346 YSSPIRTPRGLDILAACGQL 365
             + +R  RG +  +ACGQL
Sbjct: 300 VYAHVRGTRGDEENSACGQL 319


>gi|289759001|ref|ZP_06518379.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium
           tuberculosis T85]
 gi|289714565|gb|EFD78577.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium
           tuberculosis T85]
          Length = 275

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 131/282 (46%), Gaps = 27/282 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN- 65
             L  +       A+ ++G+P      R  Q+    Y R I D + M+D+   VR  +  
Sbjct: 17  RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F  +     D       TRK L R            E+V +    R T+C+SSQ GC 
Sbjct: 73  AMFPNLLTASADITCDAGQTRKTLWR-----AVDGTMFESVLMRYPRRNTVCISSQAGCG 127

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EIL QV    + L D               G ++SN+V M
Sbjct: 128 MACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 174

Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           GMGEPL N+  V  ++   +     G   S R +T+ST G  P I  + +  +GV LA+S
Sbjct: 175 GMGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALS 234

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
           LHA  + LR+ LVP+N ++ +   +DA R+Y  ++   R++ 
Sbjct: 235 LHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSI 275


>gi|74317969|ref|YP_315709.1| ribosomal RNA large subunit methyltransferase N [Thiobacillus
           denitrificans ATCC 25259]
 gi|123759042|sp|Q3SHI2|Y1951_THIDA RecName: Full=Probable RNA methyltransferase Tbd_1951
 gi|74057464|gb|AAZ97904.1| Fe-S-cluster redox enzyme, radical SAM family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 362

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 93/363 (25%), Positives = 157/363 (43%), Gaps = 38/363 (10%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI--SQEVRHLLNQHFS 69
           M   EL + L   G    H       +  W+  R + + +  ++      +R+ L   F 
Sbjct: 1   MRLPELRQRLRDHGAAPCHA---GRVLRAWVAGRPLDNRRQRAEDFLPLRLRNALPGLFD 57

Query: 70  IIY--PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127
            +    ++  E    DG+ + L+R           +E+V +P   R  +CVS+QVGC++ 
Sbjct: 58  ELRNLAQVHSEHPGEDGSARLLVRL-----ADGQTVESVLLP---RDGVCVSTQVGCAVG 109

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC TG   L+R L+  EI+ QV+LARS                    R +  +V MGM
Sbjct: 110 CVFCMTGRAGLLRQLSGAEIVAQVVLARSR-------------------RPVRKVVFMGM 150

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246
           GEP  N DNV  ++ +     G     + +  ST G      R+ +  +    A+SLH  
Sbjct: 151 GEPAHNLDNVLDAIELLGLEGG--IGHKNLVFSTVGDRRVFERLPQSTVKPARALSLHTT 208

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
              LR  L+P       + L++    Y   +    I +++ +L+GIND+  +   + ++L
Sbjct: 209 DRALRRRLLPRAPDIAPQELVELGEAYARRT-GYPIQYQWTLLEGINDTEAELEGIARLL 267

Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
            G  A +NLIP+N      +           +  + R G  + +R   G D+   CGQL+
Sbjct: 268 AGRYAVMNLIPYNATEADGFNRPSWARAAEMARRLHRRGVLAKLRHSAGQDVDGGCGQLR 327

Query: 367 SLS 369
           + +
Sbjct: 328 ARA 330


>gi|289754992|ref|ZP_06514370.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium
           tuberculosis EAS054]
 gi|289695579|gb|EFD63008.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium
           tuberculosis EAS054]
          Length = 275

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 131/282 (46%), Gaps = 27/282 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN- 65
             L  +       A+ ++G+P      R  Q+    Y R I D + M+D+   VR  +  
Sbjct: 17  RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F  +     D       TRK L R            E+V +    R T+C+SSQ GC 
Sbjct: 73  AMFPNLLTASADITCDAGQTRKTLWR-----AVDGTMFESVLMRYSRRNTVCISSQAGCG 127

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EIL QV    + L D               G ++SN+V M
Sbjct: 128 MACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 174

Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242
           GMGEPL N+  V  ++   +     G   S R +T+ST G  P I  + +  +GV LA+S
Sbjct: 175 GMGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALS 234

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
           LHA  + LR+ LVP+N ++ +   +DA R+Y  ++   R++ 
Sbjct: 235 LHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSI 275


>gi|255573175|ref|XP_002527517.1| catalytic, putative [Ricinus communis]
 gi|223533157|gb|EEF34915.1| catalytic, putative [Ricinus communis]
          Length = 337

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 144/313 (46%), Gaps = 46/313 (14%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
            +L+    +  I    V +    IWK++      ++  + ++      LL   F+     
Sbjct: 52  PDLKREFQEANISLHFVPL----IWKYVIKNPNCEWDQIPNLPSAAYSLLKSKFTTFTST 107

Query: 75  IVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVS 119
           +     S DG T K L++           +E V +   +R               TLC+S
Sbjct: 108 LHSVIESSDGVTTKLLIKLQ-----NGAFVEAVIMRYDTRLGNYGGKPRPGGPRSTLCIS 162

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC + C FC TG+     NL++ EI+ Q++ A  L                    +I
Sbjct: 163 SQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHATQLS-------------------QI 203

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VM 238
            N+V MGMGEPL N+  + +++ +         S ++IT+ST G +  I ++  ++  + 
Sbjct: 204 RNVVFMGMGEPLNNYTALVEAIRVML-GSPFQLSPKKITVSTVGVIHAINKLQRDLPGLN 262

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           LA+SLHA   D+R  ++P  R +PLE L+DA + Y   S  ++I  EY+ML G+ND  + 
Sbjct: 263 LAVSLHAPVQDIRCHIMPAARAFPLEKLMDALQVYQKNS-QQKIFIEYIMLDGVNDEEQH 321

Query: 299 ALNLIKILKGIPA 311
           A  L K+L+    
Sbjct: 322 AHQLGKLLEAFEV 334


>gi|300858724|ref|YP_003783707.1| hypothetical protein cpfrc_01307 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686178|gb|ADK29100.1| hypothetical protein cpfrc_01307 [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 203

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/191 (36%), Positives = 102/191 (53%), Gaps = 7/191 (3%)

Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242
           G GEPL N+  V  ++   +     G   S+R +T+ST G  P I ++ EE + V LA+S
Sbjct: 14  GWGEPLANYKRVVSAVRQITSPVPEGFGISQRNVTVSTVGLAPAIRKLAEEDLSVTLAVS 73

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           LH   ++LRN LVP N ++ +  ++DA R+Y   S   R++ EY +++ +ND P  A  L
Sbjct: 74  LHTPDDELRNTLVPTNNRWEVAEVLDAARYYADRSGR-RVSIEYALIRDVNDQPWRADML 132

Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359
            K L    G    +NLIP NP PG E+  S +     F   +   G    +R  RG +I 
Sbjct: 133 GKKLHKALGSLVHVNLIPLNPTPGSEWDASPKDRQHEFVRRVIAQGVPCTVRDTRGQEIA 192

Query: 360 AACGQLKSLSK 370
           AACGQL +  +
Sbjct: 193 AACGQLAAEER 203


>gi|237840113|ref|XP_002369354.1| GPI transamidase 8, putative [Toxoplasma gondii ME49]
 gi|211967018|gb|EEB02214.1| GPI transamidase 8, putative [Toxoplasma gondii ME49]
 gi|221503977|gb|EEE29654.1| GPI transamidase, putative [Toxoplasma gondii VEG]
          Length = 270

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 80/278 (28%), Positives = 127/278 (45%), Gaps = 29/278 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
                   GC+  CSFC  G    +R L+A+EI  QVL                      
Sbjct: 2   NFAARGAAGCAFNCSFCSVGKSGFLRQLSADEITDQVLFFLRQ----------------- 44

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
            G KI ++  MGMGEPL N   +  ++ I +D +  +FS R++ +ST G +P I ++ EE
Sbjct: 45  -GIKIDSVSFMGMGEPLANPK-MFDAIRILTDPLLFNFSARKLAVSTLGVLPGIKKLTEE 102

Query: 235 -IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              V LA SLH+   + RNILVP NR +P+E + D        +   RI   Y+++KG N
Sbjct: 103 HPQVNLAFSLHSPFPEERNILVPANRMFPMEEVFDLLDERLAKTGR-RIWISYILIKGRN 161

Query: 294 DSPRDALNLIKILKGIP------AKINLIPFNPWPG--CEYLCSDQKDIVTFSECIKRSG 345
           ++   A  L  +L+           +N+IP+N   G           ++  F++ +++  
Sbjct: 162 NTEEHAKALAALLRERRRPTRHLYHVNVIPYNTAQGVESSMQPPSAAEVNHFTDLLRKLH 221

Query: 346 YSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
            S   R   G  I AACGQ+ +  +      +++ Q  
Sbjct: 222 LSVSRRHTIGSAIDAACGQMHAEYEVGQLTKQRKAQQA 259


>gi|291614657|ref|YP_003524814.1| radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291584769|gb|ADE12427.1| Radical SAM domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 412

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 140/327 (42%), Gaps = 72/327 (22%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
           +     +E+V +P   RG LCVS+QVGC++ C FC +G   L+R L + EI+ QV+LAR 
Sbjct: 100 LHDGQMVESVLLP---RGGLCVSTQVGCAVGCVFCMSGRDGLLRQLGSAEIVAQVVLARK 156

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
                               R +S +V MGMGEP  N DNV +++ +       +   + 
Sbjct: 157 R-------------------RAVSKVVFMGMGEPAHNLDNVLEAIELLGTQG--NIGHKN 195

Query: 217 ITLSTSGFVPNIARVGEEI----------------------------------------- 235
           + LST G +    R+ E +                                         
Sbjct: 196 LVLSTVGDLRVFERLMEGLTHKPSPQPSGGTTDHSTRPSENNGQVAGHPACGRGGNRERQ 255

Query: 236 ------GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
                    LA+SLH     LR  L+P   + P+E L++    Y   +    + +++ ++
Sbjct: 256 SSIAAVKPALALSLHTTDEVLRTRLLPQAPRIPVEELVERAEIYARAT-GYPVQYQWTLI 314

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349
           +G+NDS  +   ++++LKG  A +N IPFN   G  Y     + I   +  +   G  S 
Sbjct: 315 EGVNDSDAELARIVQLLKGKYAIMNFIPFNEVDGLTYRRPSGERIAAMAYALNGQGIYSR 374

Query: 350 IRTPRGLDILAACGQLKSLSKRIPKVP 376
           +R   G +I  ACGQL++ + +  +  
Sbjct: 375 VRDSAGQEIEGACGQLRARAAKTRESA 401


>gi|221483043|gb|EEE21367.1| GPI transamidase, putative [Toxoplasma gondii GT1]
          Length = 270

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 80/277 (28%), Positives = 127/277 (45%), Gaps = 29/277 (10%)

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
                  GC+  CSFC  G    +R L+A+EI  QVL                       
Sbjct: 3   FAARGAAGCAFNCSFCSVGKSGFLRQLSADEITDQVLFFLRQ------------------ 44

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE- 234
           G KI ++  MGMGEPL N   +  ++ I +D +  +FS R++ +ST G +P I ++ EE 
Sbjct: 45  GIKIDSVSFMGMGEPLANPK-MFDAIRILTDPLLFNFSARKLAVSTLGVLPGIKKLTEEH 103

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             V LA SLH+   + RNILVP NR +P+E + D        +   RI   Y+++KG N+
Sbjct: 104 PQVNLAFSLHSPFPEERNILVPANRMFPMEEVFDLLDERLAKTGR-RIWISYILIKGRNN 162

Query: 295 SPRDALNLIKILKGIP------AKINLIPFNPWPG--CEYLCSDQKDIVTFSECIKRSGY 346
           +   A  L  +L+           +N+IP+N   G           ++  F++ +++   
Sbjct: 163 TEEHAKALAALLRERRRPTRHLYHVNVIPYNTAQGVESSMQPPSATEVNHFTDLLRKLHL 222

Query: 347 SSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383
           S   R   G  I AACGQ+ +  +      +++ Q  
Sbjct: 223 SVSRRHTIGSAIDAACGQMHAEYEVGQLTKQRKAQQA 259


>gi|289803429|ref|ZP_06534058.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 182

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 91/192 (47%), Positives = 115/192 (59%), Gaps = 12/192 (6%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           PE  R TLCVSSQVGC+L C FC T  Q   RNL   EI+ QV  A  ++G         
Sbjct: 1   PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG--------- 51

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
                +  R I+N+VMMGMGEPL N  NV  ++ I  D  G   SKRR+TLSTSG VP +
Sbjct: 52  -AAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPAL 110

Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEY 286
            ++G+ I V LAISLHA ++ +R+ +VPIN+KY +E  + A R Y   SNA   R+T EY
Sbjct: 111 DKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEY 170

Query: 287 VMLKGINDSPRD 298
           VML  +ND    
Sbjct: 171 VMLDHVNDGTEH 182


>gi|289524569|ref|ZP_06441423.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502191|gb|EFD23355.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 197

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 81/219 (36%), Positives = 124/219 (56%), Gaps = 23/219 (10%)

Query: 38  IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI 97
           I +WIY + + DFQ M+++S+E+R  L     +  P +  E+ S DGT+K+L +F     
Sbjct: 1   ICQWIYQKKVFDFQEMTNLSKELRGKLADAVMVAPPILTREETSKDGTKKYLWQFHD--- 57

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
                +E+V + ++ R T C+S+QVGC L C+FC +G    VR+L+A EI+ Q L    L
Sbjct: 58  --GERVESVLLTQEGRLTACLSTQVGCPLACAFCASGQGGFVRDLSAGEIVGQFLAMEKL 115

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
            G                 R I N+V MGMGEP  N ++V KS+ I ++        RRI
Sbjct: 116 AG-----------------RDIDNVVYMGMGEPFLNQESVFKSIKILNEPKMRGLGIRRI 158

Query: 218 TLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILV 255
           T+ST+G VP I  + E ++ V L++SLHA ++ LR+ L+
Sbjct: 159 TISTAGIVPGILALAEAQMPVKLSVSLHAPNDRLRSKLM 197


>gi|146319331|ref|YP_001199043.1| Fe-S-cluster redox protein [Streptococcus suis 05ZYH33]
 gi|145690137|gb|ABP90643.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis 05ZYH33]
          Length = 208

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 112/210 (53%), Gaps = 21/210 (10%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+    +  L + +L+ G      + R +QIW+W+Y   ++ F  M+++ + +   L 
Sbjct: 2   KPSIYAFSQANLVDWILENG----EKKFRATQIWEWLYRSRVQSFAEMTNLPKSLIEKLE 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           +HF +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  EHFVVNPLKQRIVQESKDGTIKYLFELPDGML-----IETVLMHQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G     R+LT+ EI+ Q++L +  L +             +   ++S+IV+M
Sbjct: 113 IGCTFCASGLIPKQRDLTSGEIVAQIMLVQKYLDE------------RNQNERVSHIVVM 160

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
           G+GEPL N+DNV   L + +D  GL+   R
Sbjct: 161 GIGEPLDNYDNVMTFLRVVNDDKGLAIGAR 190


>gi|70948819|ref|XP_743877.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56523585|emb|CAH84934.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 379

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 161/371 (43%), Gaps = 58/371 (15%)

Query: 21  LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI 80
           ++K+    R+ + R  QI   IY   I +   M +I  ++R  L   FS     I   K 
Sbjct: 10  IVKMIERNRYEKYRLKQITDNIYKGKIININNMKNIPTDIRKNLKSIFSENILSIKPIKE 69

Query: 81  SC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
              D   K L     +      +IE   +   S  +LC+SSQ+GCS  C FC TG   + 
Sbjct: 70  DKYDRAYKILFECKDK-----EKIEATALDFGSHTSLCISSQIGCSFGCKFCATGQIGIK 124

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           R L  +EI  Q+L  +                  S    I N+  MGMGEPL N  NV +
Sbjct: 125 RQLELDEITDQLLYFQ------------------SKNVNIKNVSFMGMGEPLAN-PNVFE 165

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPIN 258
           ++   ++S   S S RRI +ST G +P I ++ E    V L+ SLH+   + R+ LVPIN
Sbjct: 166 AIRFFNNSNFFSLSSRRINISTVGLLPGIKKLNELFPQVNLSFSLHSPFTEERDQLVPIN 225

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK-ILKGIPAK----- 312
           + +P   ++D        ++  R+   Y+++K +NDS   A  L   ILK  P+      
Sbjct: 226 KLFPFHEVLDLLDDRIAKTSR-RVWISYILIKDVNDSTDHAEALCDHILKRPPSVRYLYN 284

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFS-----ECIKRSGY---SSPI----------RTPR 354
           I LIP+N   G  +       I  F      + +K+       + I          R   
Sbjct: 285 ICLIPYNK--GITFHR-----ISFFYRYSIIKIVKKQMIYTKYTTINMFFFLSFLNRNSF 337

Query: 355 GLDILAACGQL 365
           G  I AACGQL
Sbjct: 338 GYAIDAACGQL 348


>gi|325849079|ref|ZP_08170571.1| putative 23S rRNA m2A2503 methyltransferase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480324|gb|EGC83387.1| putative 23S rRNA m2A2503 methyltransferase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 223

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 20/239 (8%)

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
               L R+L+A EI+ ++ L      D                  ISNIV+MG+GEPL N
Sbjct: 4   QKNGLERSLSAAEIIEEIYLLERENSD------------------ISNIVVMGIGEPLDN 45

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRN 252
           F N++K + I +D  G + S R IT+ST G V  I  +      + LA+SLH   ++ R 
Sbjct: 46  FSNIEKFIKIITDQKGRNLSHRSITVSTVGLVDKIYDLANLGYDINLAVSLHYAFDEKRM 105

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
             +P  +KY ++ +I AC +Y   +   R+++EYV++ G+N+   D   L  + KG    
Sbjct: 106 AYMPSGKKYKIKDIIKACDYYLEKTKR-RVSYEYVVIDGVNNLREDIDQLENLFKGKNIH 164

Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           INLIP NP    +Y  +    +  F + + + G ++ IR   G DI A+CGQL++   R
Sbjct: 165 INLIPLNPIEEFKYSKTKNNVMDQFQQKLTKKGLNATIRRSMGSDIDASCGQLRNNYAR 223


>gi|82794611|ref|XP_728508.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484893|gb|EAA20073.1| unnamed protein product [Plasmodium yoelii yoelii]
          Length = 351

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 105/363 (28%), Positives = 163/363 (44%), Gaps = 41/363 (11%)

Query: 12  MMREELEEA-----LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           M   ++E +     ++K+    ++ + R  QI   IY   I +   M +I  ++R  L  
Sbjct: 1   MTYNKMERSKRYMNIVKMIERNKYEKYRLKQITDNIYKGKIININNMKNIPTDIRKNLKN 60

Query: 67  HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
            FS     I   K    D   K L     +      +IE   +   S  +LC+SSQ+GCS
Sbjct: 61  IFSENILSIKPIKEDKYDRAYKILFECKDK-----EKIEATALDFGSHTSLCISSQIGCS 115

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
             C FC TG   + R L  +EI  Q+L  +                  S    I N+  M
Sbjct: 116 FGCKFCATGQIGIKRQLELDEITDQLLYFQ------------------SKNVNIKNVSFM 157

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
           GMGEPL N  NV +++   ++S   S S RRI +ST G +P I ++ E    V L+ SLH
Sbjct: 158 GMGEPLAN-PNVFEAIRFFNNSNFFSLSSRRINISTVGLLPGIKKLNELFPQVNLSFSLH 216

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +   + R+ LVPIN+ +P   ++D        +N  R+   Y+++K +NDS   A  L  
Sbjct: 217 SPFTEERDQLVPINKLFPFHEVLDLLDDRIAKTNR-RVWISYILIKDVNDSTDHAEALCD 275

Query: 305 -ILKGIPAK-----INLIPFNPWPGC--EYLC-SDQKDIVTFSECIKRSGYSSPIRTPRG 355
            I+K  P+      I LIP+N       E+    +++ I  F + +++   S   R    
Sbjct: 276 HIIKRPPSVRYLYNICLIPYNKAKNVCDEFQRLDEEEKIRQFEKILRKHRISFFYRYKIL 335

Query: 356 LDI 358
           LDI
Sbjct: 336 LDI 338


>gi|323449897|gb|EGB05782.1| hypothetical protein AURANDRAFT_30404 [Aureococcus anophagefferens]
          Length = 315

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 91/321 (28%), Positives = 135/321 (42%), Gaps = 46/321 (14%)

Query: 76  VDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIP--------EKSRGTLCVSSQVGCSL 126
           ++E +S  DGT K L+R          ++E V IP         +++ T+CVSSQVGC  
Sbjct: 14  IEESVSAPDGTLKLLVRL-----ADGADVEAVVIPPSGGPAKNARAKSTVCVSSQVGCRQ 68

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+FC TG   L R+L+  EIL                         +      N+V MG
Sbjct: 69  ACAFCATGKMGLARSLSGVEIL-------------AQIALATAAARAARLPVPRNVVFMG 115

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI--ARVGEEIGVMLAISLH 244
           MGEP  N   V+ +++   D    ++ + R+T+ST G  P +     G      +A SLH
Sbjct: 116 MGEPGDNVGAVRDAVAALVDGARFAYGRDRVTVSTVGPAPGVFAELFGYADAPAVAWSLH 175

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302
           +   +LR  LVP  + +    L D           +R     E V++ G+ND P DA  +
Sbjct: 176 SADEELRRTLVPTAK-HSAAELRDGLVRALEARPEKRRKAVLEVVLIAGVNDGPGDADAI 234

Query: 303 IKILKGI------------PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSS 348
              +K I               +NLIP+N     +  +       +  F   ++  G  S
Sbjct: 235 AAFVKPIEAACTGTAGGRTGVLVNLIPYNANESVDPSFEPPAPDAVQAFQARLRDRGVWS 294

Query: 349 PIRTPRGLDILAACGQLKSLS 369
             R  RG D  AACGQL + S
Sbjct: 295 SKRAERGADDAAACGQLATAS 315


>gi|194693462|gb|ACF80815.1| unknown [Zea mays]
          Length = 206

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 6/192 (3%)

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
           MGMGEP+ N  +V ++    +    L   +R +T+ST G    I  +   ++   LA+SL
Sbjct: 1   MGMGEPMMNLKSVLEAHQCFNKE--LKIGQRMMTISTVGVPNTIKMLASHKLQSTLAVSL 58

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +  LR  +VP  + YPL  L+D C+ Y  L   RR++FEY +L GIND    A  L 
Sbjct: 59  HAPNQKLRETIVPSAKSYPLGALMDDCKSYF-LETGRRVSFEYTLLAGINDEKEHAEELA 117

Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           ++L+  G    +NLIP+NP  G EY    +K +  F + ++    +  +R  RGLD  AA
Sbjct: 118 ELLRMCGGGYHVNLIPYNPIEGSEYKRPYRKVVQAFVDALEARKITVSVRRTRGLDANAA 177

Query: 362 CGQLKSLSKRIP 373
           CGQL++  ++ P
Sbjct: 178 CGQLRNEFQKNP 189


>gi|303258097|ref|ZP_07344105.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
 gi|302859116|gb|EFL82199.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
          Length = 350

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 139/321 (43%), Gaps = 35/321 (10%)

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + +        ++  S  GTR W+L+           IE V +P   R  +CVS+QVGC+
Sbjct: 61  EEYLANQLTAQEKAESETGTR-WVLK-----AYDGQLIECVLLP---REGVCVSTQVGCA 111

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L+R LT  E+  QV  A                        +  +V+M
Sbjct: 112 VGCVFCMTGKSGLIRQLTDLEVAGQVQYAMR-------------------NAPVKKVVLM 152

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           GMGEP  N  +V  ++       G     + + +ST G       + E +I   LAISLH
Sbjct: 153 GMGEPSHNLRSVFSAVEHIVRYSG--IGYKEVVISTVGDKRLFKALMESQIKPALAISLH 210

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  ++ R  L+P   +  ++ +++    Y  +     I +++ ++ G+ND   +   L  
Sbjct: 211 SAMDEKRRSLLPRAAELTVKEILEFGAKYAEV-GKYPIQYQWTLINGVNDGVDEIEALAP 269

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +     A +N+IP N   G  Y     + I    E  + +G     R     D+   CGQ
Sbjct: 270 L-WSRQAILNMIPVNAVEGSPYKRPSAEQIERIKEACRANGILLKFRDSAAQDVDGGCGQ 328

Query: 365 LKSLS-KRIPKV-PRQEMQIT 383
           L++ + KR P + P QE++I 
Sbjct: 329 LRARALKRKPAIQPAQELKIE 349


>gi|330998689|ref|ZP_08322418.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|329576428|gb|EGG57940.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 341

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 139/321 (43%), Gaps = 35/321 (10%)

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
           + +        ++  S  GTR W+L+           IE V +P   R  +CVS+QVGC+
Sbjct: 52  EEYLANQLTAQEKAESETGTR-WVLK-----AYDGQLIECVLLP---REGVCVSTQVGCA 102

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L+R LT  E+  QV  A                        +  +V+M
Sbjct: 103 VGCVFCMTGKSGLIRQLTDLEVAGQVQYAMR-------------------NAPVKKVVLM 143

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244
           GMGEP  N  +V  ++       G     + + +ST G       + E +I   LAISLH
Sbjct: 144 GMGEPSHNLRSVFSAVEHIVRYSG--IGYKEVVISTVGDKRLFKALMESQIKPALAISLH 201

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
           +  ++ R  L+P   +  ++ +++    Y  +     I +++ ++ G+ND   +   L  
Sbjct: 202 SAMDEKRRSLLPRAAELTVKEILEFGAKYAEV-GKYPIQYQWTLINGVNDGVDEIEALAP 260

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
           +     A +N+IP N   G  Y     + I    E  + +G     R     D+   CGQ
Sbjct: 261 L-WSRQAILNMIPVNAVEGSPYKRPSAEQIERIKEACRANGILLKFRDSAAQDVDGGCGQ 319

Query: 365 LKSLS-KRIPKV-PRQEMQIT 383
           L++ + KR P + P QE++I 
Sbjct: 320 LRARALKRKPAIQPAQELKIE 340


>gi|148662723|ref|YP_001284246.1| hypothetical protein MRA_2904 [Mycobacterium tuberculosis H37Ra]
 gi|148506875|gb|ABQ74684.1| hypothetical protein MRA_2904 [Mycobacterium tuberculosis H37Ra]
          Length = 195

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 7/188 (3%)

Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
            GEPL N+  V  ++   +     G   S R +T+ST G  P I  + +  +GV LA+SL
Sbjct: 7   WGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 66

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  + LR+ LVP+N ++ +   +DA R+Y  ++   R++ EY +++ +ND P  A  L 
Sbjct: 67  HAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSIEYALIRDVNDQPWRADLLG 125

Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           K L    G  A +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I A
Sbjct: 126 KRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISA 185

Query: 361 ACGQLKSL 368
           ACGQL ++
Sbjct: 186 ACGQLAAV 193


>gi|15610016|ref|NP_217395.1| hypothetical protein Rv2879c [Mycobacterium tuberculosis H37Rv]
 gi|1403399|emb|CAA98355.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
          Length = 189

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 7/188 (3%)

Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
            GEPL N+  V  ++   +     G   S R +T+ST G  P I  + +  +GV LA+SL
Sbjct: 1   WGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 60

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  + LR+ LVP+N ++ +   +DA R+Y  ++   R++ EY +++ +ND P  A  L 
Sbjct: 61  HAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSIEYALIRDVNDQPWRADLLG 119

Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           K L    G  A +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I A
Sbjct: 120 KRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISA 179

Query: 361 ACGQLKSL 368
           ACGQL ++
Sbjct: 180 ACGQLAAV 187


>gi|289571070|ref|ZP_06451297.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289544824|gb|EFD48472.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
          Length = 189

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/188 (36%), Positives = 105/188 (55%), Gaps = 7/188 (3%)

Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243
           MGEPL N+  V  ++   +     G   S R +T+ST G  P I  + +  +GV LA+SL
Sbjct: 1   MGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 60

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA  + LR+ LVP+N ++ +   +DA R+Y  ++   R++ EY +++ +ND P  A  L 
Sbjct: 61  HAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSIEYALIRDVNDQPWRADLLG 119

Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
           K L    G  A +NLIP NP PG ++  S +     F + ++  G S  +R  RG +I A
Sbjct: 120 KRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISA 179

Query: 361 ACGQLKSL 368
           ACGQL ++
Sbjct: 180 ACGQLAAV 187


>gi|147867042|emb|CAN80514.1| hypothetical protein VITISV_023658 [Vitis vinifera]
          Length = 206

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 7/192 (3%)

Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243
           MGMGEP+ N  +V ++    +    +   +R IT+S+ G    I ++   ++   LAISL
Sbjct: 1   MGMGEPMLNLKSVIEAHRCLNKD--VQIGQRMITISSVGVPNTIKKLASYKLQSTLAISL 58

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA +  LR  +VP  + YPL+ ++  CR Y  L  +RR++FEY +L G+ND+   A+ L 
Sbjct: 59  HAPNQKLRETIVPSAKSYPLDAIMKDCRDYF-LETSRRVSFEYTLLAGVNDAVEHAIELA 117

Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           ++L   G    +NLIPFNP  G E+     K +  F+  ++    +  +R  RGLD  AA
Sbjct: 118 ELLHEWGPGYHVNLIPFNPIEGSEFQRPYNK-VQAFAAALESRKVTVSVRQTRGLDASAA 176

Query: 362 CGQLKSLSKRIP 373
           CGQL++  ++ P
Sbjct: 177 CGQLRNEFQKSP 188


>gi|223993285|ref|XP_002286326.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977641|gb|EED95967.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 438

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 133/315 (42%), Gaps = 44/315 (13%)

Query: 75  IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG--TLCVSSQVGCSLTCSFCY 132
           +   K+S DGT K LL+     +   +E+E+V IP   +G  TLCVS   G  +      
Sbjct: 150 LSHMKVSSDGTTKLLLKM----VKDGLEVESVIIPWMDKGFSTLCVSWAAGKDVHSVL-- 203

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
                   ++     + +V+             +            + NIV MGMGEP  
Sbjct: 204 -------PDMYYASKICRVV-------------ESIPGNENKALPPVDNIVFMGMGEPAD 243

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRN 252
           N D V ++++   D       + +IT+ST    P+           LA S+HAV + LR 
Sbjct: 244 NADAVVRAVNTLVDRRMFGVGQSKITISTVAPDPSAFATLGSAPAALAWSVHAVDDSLRR 303

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNA--RRITFEYVMLKGINDSPRDALNLIKI----- 305
            LVP  + Y +E L         L +   RR   E  ++K +NDSP DA  L +      
Sbjct: 304 QLVPTTK-YSMEELRAGLVKALSLRSNKLRRTMLEVALMKDVNDSPDDARLLSEFAMSIM 362

Query: 306 --LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG------YSSPIRTPRGLD 357
             ++G    +NLIPFN      Y     + ++ F + +  SG          +RT RG +
Sbjct: 363 KEVRGSKIVVNLIPFNDIGHPTYRTPSMERVLEFQKIVVESGDNCDTQVLCYVRTTRGDE 422

Query: 358 ILAACGQLKSLSKRI 372
             +ACGQL +  K++
Sbjct: 423 ESSACGQLATKKKQV 437


>gi|156102374|ref|XP_001616880.1| Fe-S-cluster redox enzyme [Plasmodium vivax SaI-1]
 gi|148805754|gb|EDL47153.1| Fe-S-cluster redox enzyme, putative [Plasmodium vivax]
          Length = 337

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 149/347 (42%), Gaps = 41/347 (11%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M +     +LLK+       + R  QI   +Y   I     M ++   +R  + + FS  
Sbjct: 1   MEKSRRYASLLKMVERNGFEKYRLQQILDNMYKAKITSVSQMKNVPTNIRREMKKIFSEN 60

Query: 72  YPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
              I   ++   D   K L     +      +IE   +   S  +LC+SSQ+GCS  C F
Sbjct: 61  LLSIKPLKEYKFDRAYKVLFECKDK-----EKIEATSLDFGSHKSLCISSQIGCSFACKF 115

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TG   + R L  +EI  Q+L  +                  S    + N+  MGMGEP
Sbjct: 116 CATGQIGIKRQLELDEITDQLLYFQ------------------SKNEHVRNVSFMGMGEP 157

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249
           L N  +V +S+   +     + S RRI +ST G +P I ++ +    V L+ SLH+  ++
Sbjct: 158 LAN-PHVFESIHFFNHVNLFALSSRRINISTVGLLPGIKKLNDLFPQVNLSFSLHSPFSE 216

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R+ LVPIN+ +P   ++D        +   R+   Y++LK +NDS   A  L   +   
Sbjct: 217 ERDQLVPINKLFPFHEVLDLLDSRITRTGR-RVWISYILLKDVNDSKDHAEALCSHICQR 275

Query: 310 P------AKINLIPFNPWPGCE--YLCSDQKD-IVTFSECIKRSGYS 347
           P        + LIP+N     +  +   D++D I+ F       G S
Sbjct: 276 PRAVRYLYNVCLIPYNKAKNVDENFHRVDEEDKILQF-----EHGIS 317


>gi|319942260|ref|ZP_08016575.1| radical SAM domain-containing protein [Sutterella wadsworthensis
           3_1_45B]
 gi|319804133|gb|EFW01033.1| radical SAM domain-containing protein [Sutterella wadsworthensis
           3_1_45B]
          Length = 392

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 124/292 (42%), Gaps = 27/292 (9%)

Query: 96  CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
            +     IE V +P   R  +CVS+Q+GC++ C FC TG   LVR L+  EI        
Sbjct: 115 TLADGQTIEEVLLP---RRGVCVSTQMGCAVGCVFCMTGKGGLVRQLSDMEI-------- 163

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
                       +  +   +  +   +V MGMGEP  N DNV ++    +   G     +
Sbjct: 164 ----------AAQAALARRLRPETKKVVFMGMGEPSHNLDNVLRAAEFLALYGGFG--HK 211

Query: 216 RITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
            + +ST G       +        LA+SLH   +  R  L+P   K  ++ L +A   + 
Sbjct: 212 DLVISTVGDERLFEALNRMSARPALAVSLHTTDDAKRRTLLPRGAKMTVKALTEAAEAWA 271

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334
             +      +++ +++G+ND   +   LI++L G  A +N IP N   G  Y   D++  
Sbjct: 272 RKT-GYPTQYQWTLIQGVNDGEEEVNRLIELLTGHYAIVNFIPVNAVDGSVYSRPDREHA 330

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL--SKRIPKVPRQEMQITG 384
                 +K +G  + +R     D+   CGQL++   S        Q ++ T 
Sbjct: 331 AHLVRRLKSAGIVATLRDSAAQDVDGGCGQLRARVLSAESKARAEQAVRRTA 382


>gi|167951357|ref|ZP_02538431.1| radical SAM enzyme, Cfr family protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 220

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 82/245 (33%), Positives = 119/245 (48%), Gaps = 25/245 (10%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           + + +L+ + +  +E   +++G            ++KWI+ +G+ DF  M+DIS+ +R  
Sbjct: 1   MNETNLMELDQRSMERCFVELGSKA----FHGRNVFKWIHKQGVIDFNQMTDISKRLRVQ 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L     I  PE+V E+ + DGTRKW+L+           IETVYIP+  R T+CVSSQVG
Sbjct: 57  LESLAEIRLPELVFEQPARDGTRKWVLQL-----DDGQRIETVYIPDGERSTICVSSQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L CSFC TG+                                 G    +     +NIV
Sbjct: 112 CALNCSFCSTGSPGFQPQSLGG----------------GDYRPGLGWPAVNWWHPPTNIV 155

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           +MGMGEPL NFD V  ++ I  D      SK R+T+STSG VP + ++ E   V LA   
Sbjct: 156 LMGMGEPLANFDAVVTAMDIMQDDSAYMLSKYRVTISTSGIVPALRQLREVSDVSLARVA 215

Query: 244 HAVSN 248
                
Sbjct: 216 ACADQ 220


>gi|171920772|ref|ZP_02931966.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|185178859|ref|ZP_02964635.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024156|ref|ZP_02996884.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518505|ref|ZP_03003979.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|188524054|ref|ZP_03004149.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195867775|ref|ZP_03079776.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273491|ref|ZP_03206027.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554199|ref|YP_002284612.1| hypothetical protein UUR10_0208 [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225550410|ref|ZP_03771359.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551492|ref|ZP_03772438.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|171903525|gb|EDT49814.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|184209495|gb|EDU06538.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188018787|gb|EDU56827.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188997879|gb|EDU66976.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195659915|gb|EDX53295.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195660630|gb|EDX53886.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198250011|gb|EDY74791.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209541700|gb|ACI59929.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225379307|gb|EEH01672.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225379564|gb|EEH01926.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 335

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 88/340 (25%), Positives = 158/340 (46%), Gaps = 42/340 (12%)

Query: 32  RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91
              + QI+ WIY + I DF   S+IS+  + +L ++F      I + + + DG+ K+ L 
Sbjct: 30  PFISKQIYSWIYQKRIFDFDKFSNISKSNQSILKENFDNNLLTINEYQSNSDGSIKFKLL 89

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                I     I  + I  ++ G L   +  G +          +K + NL+  E++LQ 
Sbjct: 90  TTINLI-----INCMIIKFEN-GFLIKINPFGIN---------DKKEIINLSTNELVLQT 134

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           LL +  L                   KI+N+++ G  + L N + V   ++I +D  GL+
Sbjct: 135 LLVQQFLDQHKLG-------------KITNVIVKGSQDSLLNMEAVSNFINIINDENGLN 181

Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDL--RNILVPINRKYPLEMLID 268
             KR+I + TSG   ++ + G+ +  + L ISL+A ++ +  + +L   N+ +    LI+
Sbjct: 182 IGKRKIVVWTSGVDVDLIKWGQLQNQIELIISLNASNSQVYKKLMLNKTNQNWSFIKLIE 241

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
             + Y  ++N  R+  EY+++  IND+   A  L+++LK I   + LIP+N      +  
Sbjct: 242 QIKTYTEMTN-NRVVLEYLLIDKINDNLDYANELVELLKNILCYVLLIPYN----LNHKT 296

Query: 329 SDQKDIVTFSECI--KRSGYSSPIRTPRGLDILAACGQLK 366
           SD   +  F   +   +   S  +R    LDI     QLK
Sbjct: 297 SDN--LEEFFNILSINKIRISKRVRKSNDLDIS--FTQLK 332


>gi|159479394|ref|XP_001697778.1| hypothetical protein CHLREDRAFT_120230 [Chlamydomonas reinhardtii]
 gi|158274146|gb|EDO99930.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 239

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 121/249 (48%), Gaps = 23/249 (9%)

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC+TG + L+ NL+  +I+                              I+N+V M
Sbjct: 1   MNCQFCFTGRRGLLGNLSTAQIIE--------------QPQPRPQQSQQAPPPITNLVFM 46

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-------VM 238
           GMGEPL N   V  ++ I +   GL+ S  R+TLST G +P +    +          V 
Sbjct: 47  GMGEPLHNPTAVFAAIDILAHRHGLAMSPSRVTLSTVGLLPQLQHFLDSSRGEGGRARVC 106

Query: 239 LAISLHAVSNDLRNILVPINRKYPL--EMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           LA+S+HA +++LR  +VP N +  L       +      L   R + FEY +L+G+ND P
Sbjct: 107 LAVSIHAGTDELRGAIVPSNTRLSLPPAGFSPSNNTIRPLRAGRYVLFEYTLLRGVNDRP 166

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
            DA  L++  K I    NLI FNP+PG  Y  S  + ++ F + +  +G    +R  +G 
Sbjct: 167 EDAAALLEATKDIECSFNLIMFNPFPGTLYSPSTPERLLAFQKVLWAAGRIVHVRLSKGD 226

Query: 357 DILAACGQL 365
           D +AACGQL
Sbjct: 227 DGMAACGQL 235


>gi|299116401|emb|CBN74666.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 598

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 93/315 (29%), Positives = 151/315 (47%), Gaps = 57/315 (18%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV--RGIRDFQG----------- 52
           K  L G++  E ++ + ++G        R   +  W+Y   R IRD              
Sbjct: 92  KVMLKGLLFSETQQLMERLGEKAG----RAEVLAGWLYHDRRLIRDIAETAGGAGSAEPG 147

Query: 53  ------MSDIS-----------QEVRHLLNQHFSI-IYPEIVDEKISCDGTRKWLLRFPA 94
                  ++ S           ++ R  + +  +     E+ D +++ DGTRK L+    
Sbjct: 148 GDATNSNTNRSGSLVSSKSRIGKKTRDAVREVATADGGLELEDVQLAADGTRK-LVSVLT 206

Query: 95  RCIGGPVEIETVYIPE------KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
              G   ++ETV IP       + R T+CVSSQVGC++ C FC+TG   L+ NL A +I+
Sbjct: 207 SGEGAGKKVETVIIPMLRGPQREPRYTVCVSSQVGCAMNCQFCFTGRLGLMANLQAAQIV 266

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            QVL+A+              +        ++ +V MGMGEP  N+D V +++ I +D  
Sbjct: 267 EQVLVAKRY------------LETVGDPSPVTGVVFMGMGEPFDNYDRVMRAVKILTDPR 314

Query: 209 -GLSFSKRRITLSTSGFVPNIARVGEEI--GVMLAISLHAVSNDLRNILVPINRKYPLEM 265
            G+      +T+ST G VP I R  ++   G  LAISLH+V +++R+ L+P+NR+YPLE 
Sbjct: 315 AGVRLKASSVTVSTVGLVPQIERFCKDPANGASLAISLHSVVDEVRDKLIPVNRRYPLEQ 374

Query: 266 LIDACRHYPGLSNAR 280
           L +  R +   S+  
Sbjct: 375 LSETLRTHFPRSSKP 389



 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 42/86 (48%)

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343
            EY +L G+NDS  DA  L + L+G+   +NLI FN   G  +  S  +    F   +  
Sbjct: 488 VEYTLLGGVNDSLGDAGRLAEWLEGVACVVNLITFNAHAGTPFSPSSPEAAEAFRRALAA 547

Query: 344 SGYSSPIRTPRGLDILAACGQLKSLS 369
            G     R  RG D +AACGQL   S
Sbjct: 548 RGQLCTFRDSRGDDGMAACGQLGGES 573


>gi|298706960|emb|CBJ29779.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 531

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 97/288 (33%), Positives = 136/288 (47%), Gaps = 49/288 (17%)

Query: 4   LKKESLIG----MMREELEEALLKIGIPQRHVRMRTSQIWKW------IYVRGIRDFQGM 53
           + K+ ++     +    L  AL + GI + H     + +W +      ++      F G 
Sbjct: 1   MVKKRVLDPIPVLDEALLSAALREEGIKELH----AASVWHYALSEGKLHGSDAT-FDGF 55

Query: 54  SD------ISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVY 107
            D             LL + F+++   +V+ + S DGT K L+R           +ETV 
Sbjct: 56  EDGKFYMSAPAPTGPLLRRKFAVLTSTVVETQRSEDGTVKLLVRLQD-----GQMVETVI 110

Query: 108 IPEKS---RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164
           I       R TLCVSSQVGC + C+FC TGT  L  +LTA EIL QVL A  +       
Sbjct: 111 IKHNGTHPRTTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVS------ 164

Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
                         I N+V MGMGEPL N+D V  S+   +DS     S R ITLST G 
Sbjct: 165 -------------PIRNVVFMGMGEPLNNYDAVLASIRGMADSRMFKLSPRHITLSTVGV 211

Query: 225 VPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           VP + ++  +     LA+SLHA + +LRN +VP  R Y L+ L+DA  
Sbjct: 212 VPRMKQLTIDAPETQLALSLHAPNQELRNRIVPSARAYRLDKLMDALD 259



 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW--PGCE-YLCSDQKDIV 335
            RR   EYVML G+ND+      L ++LKG    +NLIP+NP   PG E +    ++ + 
Sbjct: 336 GRRALIEYVMLAGVNDTEECGRELGELLKGRNVLVNLIPYNPTYAPGSEEFKEPTEEALQ 395

Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
            F   +   G    IR   G DI  ACGQL   
Sbjct: 396 KFRAIVHEHGLLVTIRRHHGRDIDGACGQLAVK 428


>gi|226323828|ref|ZP_03799346.1| hypothetical protein COPCOM_01603 [Coprococcus comes ATCC 27758]
 gi|225208012|gb|EEG90366.1| hypothetical protein COPCOM_01603 [Coprococcus comes ATCC 27758]
          Length = 176

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/194 (39%), Positives = 109/194 (56%), Gaps = 19/194 (9%)

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
           +L QV   + + G+                 ++SNIV+MG GEPL N+DN  K + + SD
Sbjct: 1   MLRQVYQIQKITGE-----------------RVSNIVIMGTGEPLDNYDNFLKFIHMVSD 43

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             GL+ S+R IT ST G VPNI R+ EE + + LA+SLH  + + R  L+P+  KY L  
Sbjct: 44  EHGLNISQRNITASTCGIVPNIRRLAEEKLQITLALSLHGSNQEKRRSLMPVANKYELHE 103

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           +++AC +Y   +   RITFEY ++ G+ND+P DA  L+ ILK     +NLIP NP     
Sbjct: 104 VLEACDYYFEKTGR-RITFEYSLVHGVNDTPEDAKELMGILKDRNCHLNLIPVNPIKERN 162

Query: 326 YLCSDQKDIVTFSE 339
           Y   D+K    F +
Sbjct: 163 YEKPDKKKCREFQK 176


>gi|75762654|ref|ZP_00742496.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489853|gb|EAO53227.1| Radical SAM family enzyme [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 246

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 103/192 (53%), Gaps = 23/192 (11%)

Query: 5   KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
           KK S+  +   E+++ L + G P    + R  QI+ W+Y + +++++ MS++S+ +R  L
Sbjct: 15  KKPSIYSLQIHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           +  F I     + ++ S DGT K+L +           IETV +  +   ++CV++QVGC
Sbjct: 71  SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
            + C+FC +    L RNL A EI+ QV+  +  L +                 ++S++V+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171

Query: 185 MGMGEPLCNFDN 196
           MG+GEP  N+DN
Sbjct: 172 MGIGEPFDNYDN 183


>gi|221060556|ref|XP_002260923.1| radical SAM protein [Plasmodium knowlesi strain H]
 gi|193810997|emb|CAQ42895.1| radical SAM protein, putative [Plasmodium knowlesi strain H]
          Length = 377

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 88/317 (27%), Positives = 140/317 (44%), Gaps = 33/317 (10%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
           M + +   +LLK+       + R  QI   +Y   I     M ++   +R  + + FS  
Sbjct: 1   MEKSKRYASLLKMMDRNSFPKYRLQQILDNMYKAKITSVSKMKNVPTNIRREMKKIFSEN 60

Query: 72  YPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
              I   ++   D   K L     +      +IE   +   S  +LC+SSQ+GCS  C F
Sbjct: 61  LLSIKPLKEYKFDRAYKVLFECKDK-----EKIEATSLDFGSHKSLCISSQIGCSFACKF 115

Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
           C TG   + R L  +EI  Q+L  +                  S    + N+  MGMGEP
Sbjct: 116 CATGQIGIKRQLELDEITDQLLYFQ------------------SKNENVRNVSFMGMGEP 157

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSND 249
           L N  +V +S+   ++    S S RRI +ST G +P I ++ +    V L+ SLH+  ++
Sbjct: 158 LAN-PHVFESIKFFNNVNLFSLSSRRINISTVGLLPGIKKLNDLHPQVNLSFSLHSPFSE 216

Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309
            R+ LVPIN+ +P   ++D        +   R+   Y++LK +NDS   A  L   +   
Sbjct: 217 ERDKLVPINKLFPFHEVLDLLDSRIARTGR-RVWISYILLKDVNDSKDHAEALCNHIVQR 275

Query: 310 P------AKINLIPFNP 320
           P        + LIP+N 
Sbjct: 276 PRAVRYLYNVCLIPYNK 292


>gi|302841922|ref|XP_002952505.1| hypothetical protein VOLCADRAFT_105556 [Volvox carteri f.
           nagariensis]
 gi|300262144|gb|EFJ46352.1| hypothetical protein VOLCADRAFT_105556 [Volvox carteri f.
           nagariensis]
          Length = 368

 Score =  205 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 92/360 (25%), Positives = 133/360 (36%), Gaps = 141/360 (39%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
           L  +   ELEE  + +G P +    R  Q+++W+Y                         
Sbjct: 101 LKNLTLPELEEWCISVGEPAK----RAKQLYRWLY------------------------- 131

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
                          G RKW +R   +  G P      +            ++VGC++ C
Sbjct: 132 ---------------GNRKW-IRNLDQADGDPQAFSAAF-----------KAKVGCAMNC 164

Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188
            FCYTG   L+ NL+  +IL QV+ AR  L +             SV   I+NIV MGMG
Sbjct: 165 QFCYTGRMGLLGNLSTAQILEQVVEARRYLAE------------QSVHIPIANIVFMGMG 212

Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
           EPL N+D V  ++                                               
Sbjct: 213 EPLHNYDAVMAAI----------------------------------------------- 225

Query: 249 DLRNILVPINRKYPLEMLIDACRH---YPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           ++R+ +VP NR+YPLE L+   R    Y        +  EYV+L G+NDS  DA  L+ +
Sbjct: 226 EVRDWIVPTNRRYPLEQLLGVLREAFPYDKRKGDNFVVIEYVLLAGVNDSTEDAKRLLNL 285

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
              I   +NLI FNP  G ++  S                        +G + +AACGQL
Sbjct: 286 TNDIYCLVNLIVFNPHTGTQFSRS-----------------------SKGDEQMAACGQL 322


>gi|294944627|ref|XP_002784350.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239897384|gb|EER16146.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 308

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 144/301 (47%), Gaps = 31/301 (10%)

Query: 14  REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF-SIIY 72
             E+ E L K   P+  + +    + + ++ +G+     ++ + Q VR  L       + 
Sbjct: 36  LSEIVECLEKERTPEWQIGL----VIQDVFKKGVSSPSAINRVPQGVRDALQARLGESLS 91

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
           P  V E+ S D   K+LL           +IE V +  +S  +LCVSSQ+GC+  CSFC 
Sbjct: 92  PLRVLEQGSADFAHKFLLE----SRQDGGKIEAVGLDFRSHTSLCVSSQIGCAFNCSFCA 147

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
           TG   L R L+ +EI+ QVL+ R                  + G  + ++  MGMGEPL 
Sbjct: 148 TGKLGLKRQLSVDEIVGQVLMFR------------------ATGNVVDSVSFMGMGEPLA 189

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251
           N   +  ++S+ +D   +  S RR+++ST G +P + ++ E      +A SLH+   + R
Sbjct: 190 NPK-IFNAISVMTDPQLVGLSTRRMSISTIGIIPGLVKLTELHPQANVAYSLHSPFPEER 248

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK-ILKGIP 310
             ++PI R YP   + D        +   RI   Y++LKGINDS R A    K  LK  P
Sbjct: 249 EKIMPIQRVYPFAKVFDVLDDRIKRTGR-RIWISYLLLKGINDSERYATYEAKNALKRKP 307

Query: 311 A 311
           A
Sbjct: 308 A 308


>gi|313624986|gb|EFR94881.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
           FSL J1-023]
          Length = 179

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 6/177 (3%)

Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
             R IT+STSG  P I     E+  V LAISLHA +N+LR  ++ IN+ Y +E L++A  
Sbjct: 1   GARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIH 60

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGC-EYLC 328
           +Y   +N  RITFEY+MLKG+ND  ++AL L  +L      A +NLIP+NP     +Y  
Sbjct: 61  YYVNKTNR-RITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYER 119

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
           S ++D++ F + +K++G +  IR   G DI AACGQL+S   KR+    R + +   
Sbjct: 120 STKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAA 176


>gi|77415028|ref|ZP_00791102.1| Unknown [Streptococcus agalactiae 515]
 gi|77158922|gb|EAO70159.1| Unknown [Streptococcus agalactiae 515]
          Length = 168

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 100/166 (60%), Gaps = 5/166 (3%)

Query: 217 ITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
           IT+STSG    I     E + V L++SLHA +N+LR+ ++ INR +PLE L  A  +Y  
Sbjct: 1   ITVSTSGLAHKIREFANEGVQVNLSVSLHAPNNELRSSIMRINRSFPLEKLFAAIEYYIE 60

Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCE-YLCSDQK 332
            +N  R+TFEY+ML G+ND+P +A  L  + K I   + +NLIP+NP    + Y  S ++
Sbjct: 61  TTNR-RVTFEYIMLNGVNDTPENAQELADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKE 119

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQ 378
            +  F + +K++G +  +R   G DI AACGQL+S + +  +   +
Sbjct: 120 RVEAFYDVLKKNGVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAK 165


>gi|313620442|gb|EFR91829.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
           FSL S4-378]
          Length = 180

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 73/178 (41%), Positives = 107/178 (60%), Gaps = 6/178 (3%)

Query: 212 FSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            + R IT+STSG  P I     E+  V LAISLHA +N+LR  ++ IN+ Y +E L++A 
Sbjct: 1   INARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAI 60

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGC-EYL 327
            +Y   +N  RITFEY+MLKG+ND  ++AL L  +L      A +NLIP+NP     +Y 
Sbjct: 61  HYYVNKTNR-RITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYE 119

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
            S ++D++ F + +K++G +  IR   G DI AACGQL+S   KR+    R + +   
Sbjct: 120 RSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAA 177


>gi|71029582|ref|XP_764434.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351388|gb|EAN32151.1| hypothetical protein, conserved [Theileria parva]
          Length = 235

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 84/229 (36%), Positives = 116/229 (50%), Gaps = 28/229 (12%)

Query: 31  VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKW 88
            + R SQI+  IY     +F  M  + + +R  L+ +F  S++    V E  SCD  +K 
Sbjct: 20  PKYRLSQIFNSIYRNKTSNFLSMYHLPKILRDGLHDNFNGSLLSLTPVSE-SSCDRAKKV 78

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L +           IE V +   +  +LC+SSQVGCS  CSFC TG   L RNLT +EI 
Sbjct: 79  LFQNQD-----GSRIEAVLLHFNTHKSLCISSQVGCSFACSFCATGKIGLKRNLTMDEIT 133

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            QVL  + L                  G KI +I  MGMGEPL N  NV +++S+ +D  
Sbjct: 134 DQVLYFQQL------------------GHKIDSISFMGMGEPLSN-PNVFRAISVLTDKR 174

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVP 256
               S RRI +ST G +P I ++ +E   V LA SLH+   + RN +VP
Sbjct: 175 YFGLSPRRINVSTVGILPGIKKLNKEFPYVNLAYSLHSPFTEERNEMVP 223


>gi|307127683|ref|YP_003879714.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae 670-6B]
 gi|306484745|gb|ADM91614.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae 670-6B]
          Length = 300

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 143/370 (38%), Gaps = 81/370 (21%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    D     ++   +        S+I+ +
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKI 172

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-FVPNIARVGEEIGVMLAISLH 244
               P    + +  ++    ++     +   I L+     V     + E +       L 
Sbjct: 173 NRAFP---IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKN--IKKLS 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            V+      L+P N   P+             S   R+   Y  LK              
Sbjct: 228 YVN------LIPYN---PVSE-----HDQYSRSPKERVLAFYDTLKK------------- 260

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             KG+   +                                     R   G DI AACGQ
Sbjct: 261 --KGVNCVV-------------------------------------RQEHGTDIDAACGQ 281

Query: 365 LKSLSKRIPK 374
           L+S + +  +
Sbjct: 282 LRSNTMKRDR 291


>gi|168492917|ref|ZP_02717060.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC3059-06]
 gi|183576957|gb|EDT97485.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           CDC3059-06]
          Length = 300

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 144/370 (38%), Gaps = 81/370 (21%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  ++ + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    D     ++   +        S+I+ +
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKI 172

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-FVPNIARVGEEIGVMLAISLH 244
               P    + +  ++    ++     +   I L+     V     + E +       L 
Sbjct: 173 NRAFP---IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKN--IKKLS 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            V+      L+P N   P+             S   R+   Y  LK              
Sbjct: 228 YVN------LIPYN---PVSE-----HDQYSRSPKERVLAFYDTLKK------------- 260

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             KG+   +                                     R   G DI AACGQ
Sbjct: 261 --KGVNCVV-------------------------------------RQEHGTDIDAACGQ 281

Query: 365 LKSLSKRIPK 374
           L+S + +  +
Sbjct: 282 LRSNTMKRDR 291


>gi|221231562|ref|YP_002510714.1| radical SAM superfamily protein [Streptococcus pneumoniae ATCC
           700669]
 gi|220674022|emb|CAR68535.1| radical SAM superfamily protein [Streptococcus pneumoniae ATCC
           700669]
          Length = 300

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 143/370 (38%), Gaps = 81/370 (21%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  ++ + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    D     ++   +        S+ + +
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSTMKI 172

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-FVPNIARVGEEIGVMLAISLH 244
               P    + +  ++    ++     +   I L+     V     + E +       L 
Sbjct: 173 NRAFP---IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKN--IKKLS 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            V+      L+P N   P+             S   R+   Y  LK              
Sbjct: 228 YVN------LIPYN---PVSE-----HDQYSRSPKERVLAFYDTLKK------------- 260

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             KG+   +                                     R   G DI AACGQ
Sbjct: 261 --KGVNCVV-------------------------------------RQEHGTDIDAACGQ 281

Query: 365 LKSLSKRIPK 374
           L+S + +  +
Sbjct: 282 LRSNTMKRDR 291


>gi|171920082|ref|ZP_02931510.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902433|gb|EDT48722.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 336

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 91/365 (24%), Positives = 168/365 (46%), Gaps = 45/365 (12%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + +  +   EL+E L ++G+        + QI+ WIY + I +F   S+I++    +L +
Sbjct: 9   KEIYSLSLNELKEELFELGL----KSFISKQIYSWIYQKRIFNFDKFSNIAKNNVIILKE 64

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +FS    +I   + + DG+ K+        I     I  + I  K+ G L   +  G + 
Sbjct: 65  NFSNNLLKINSYQSNSDGSIKFEFLTDKNLI-----INCMIIKFKN-GFLIKINPFGINF 118

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
                     K + NL+  E++LQ+LL +  L                    I+N+++ G
Sbjct: 119 K---------KEIINLSTNELVLQILLIQQFLDQRKLGN-------------ITNVIIKG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
           + + L N D V   ++I ++  GL+  KR+I + TSG   ++ + G+ +  + L IS++A
Sbjct: 157 LQDSLLNMDVVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNA 216

Query: 246 VSN--DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
            ++    + +L  +N+ +    LI+  + Y  ++N  R+  EY+++  IND    A  L+
Sbjct: 217 SNSLIYQKIMLKKLNQNWSFLKLIEQIKAYTKITN-NRVVLEYLLIDKINDDLNYANELV 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI--KRSGYSSPIRTPRGLDILAA 361
           ++LK I   + LIP+N      Y  S   ++  F   +   +   S  IR    LDI   
Sbjct: 276 ELLKNILCYVLLIPYNLN---NYRTS--ANLDDFFNILSVNKIRISKRIRKSNDLDIS-- 328

Query: 362 CGQLK 366
             QLK
Sbjct: 329 FKQLK 333


>gi|332076047|gb|EGI86513.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pneumoniae GA41301]
          Length = 300

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 142/370 (38%), Gaps = 81/370 (21%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC  G  K  R+L   EI+ Q++L +    D     ++   +        S+I+ +
Sbjct: 113 IGCTFCAFGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKI 172

Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-FVPNIARVGEEIGVMLAISLH 244
               P    + +  ++    ++     +   I L+     V     + E +       L 
Sbjct: 173 NRAFP---IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKN--IKKLS 227

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            V+      L+P N   P+             S   R+   Y  LK              
Sbjct: 228 YVN------LIPYN---PVSE-----HDQYSRSPKERVLAFYDTLKK------------- 260

Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
             KG+   +                                     R   G DI AACGQ
Sbjct: 261 --KGVNCVV-------------------------------------RQEHGTDIDAACGQ 281

Query: 365 LKSLSKRIPK 374
           L+S + +  +
Sbjct: 282 LRSNTMKRDR 291


>gi|302854556|ref|XP_002958785.1| hypothetical protein VOLCADRAFT_108314 [Volvox carteri f.
           nagariensis]
 gi|300255893|gb|EFJ40175.1| hypothetical protein VOLCADRAFT_108314 [Volvox carteri f.
           nagariensis]
          Length = 993

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 137/370 (37%), Gaps = 85/370 (22%)

Query: 38  IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARC 96
           +   +       +  + D+ +    LL+++F+     ++  + S D  T K L+      
Sbjct: 626 LSGHLIRHPESSWHDVPDMPKAALALLDKYFTKFTTRVLKCQTSSDSTTTKLLVELQD-- 683

Query: 97  IGGPVEIETVYIPEKS-----------------RGTLCVSSQVGCSLTCSFCYTGTQKLV 139
               +++E V +   S                    +    Q G            +   
Sbjct: 684 ---GMQVEAVVMTYDSPSRDPQLMGSNGPEADPHLPVDHRQQPGEEEQEEEEDKQRKGEQ 740

Query: 140 ----RNLTAEEI---------------LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
                    +E+                 + +    L G+    E +E ++       I 
Sbjct: 741 TGPCGEQQPQEMKVVMVWAGLPVAALGAGEWVGTMGLKGNLNAGEIVEQLMHARAVTPIR 800

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VML 239
           NIV MGMGEPL N++ V+ ++++ +DS      +R +T+ST G VP I ++ +++  V L
Sbjct: 801 NIVFMGMGEPLNNYEAVRSAVAMMTDSRFFGLRRRHVTVSTVGVVPRIKQLAQDLPGVSL 860

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           A+SLHA + +LR  +VP  R Y L +L+DA                              
Sbjct: 861 ALSLHAPTQELRAKIVPSARAYKLPVLMDA------------------------------ 890

Query: 300 LNLIKILKGIPAKINLIPFNPW--PGCEYL-CSDQKDIVTFSECIKR-SGYSSPIRTPRG 355
                   G    INLIP+NP   P   +     +  +  F   ++   G  + IR   G
Sbjct: 891 --------GDDVVINLIPWNPIYQPEGPFFNAPAEGSVAAFQGVLRHTYGLHTTIRQEMG 942

Query: 356 LDILAACGQL 365
            DI  ACGQL
Sbjct: 943 QDISGACGQL 952


>gi|13357773|ref|NP_078047.1| hypothetical protein UU214 [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170761929|ref|YP_001752296.1| hypothetical protein UPA3_0221 [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|183508786|ref|ZP_02958251.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|11356788|pir||H82920 conserved hypothetical UU214 [imported] - Ureaplasma urealyticum
 gi|6899181|gb|AAF30622.1|AE002120_14 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827506|gb|ACA32768.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|182675731|gb|EDT87636.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
          Length = 336

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/365 (25%), Positives = 168/365 (46%), Gaps = 45/365 (12%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + +  +   EL+E L K+G+        + QI+ WIY + I +F   S+I++    +L +
Sbjct: 9   KEIYSLSLNELKEELFKLGL----KSFISKQIYSWIYQKRIFNFDKFSNIAKNNVIILKE 64

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +FS    +I   + + DG+ K+        I     I  + I  K+ G L   +  G + 
Sbjct: 65  NFSNNLLKINSYQSNSDGSIKFEFLTDKNLI-----INCMIIKFKN-GFLIKINPFGINF 118

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
                     K + NL+  E++LQ+LL +  L                    I+N+++ G
Sbjct: 119 K---------KEIINLSTNELVLQILLIQQFLDQRKLGN-------------ITNVIIKG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
           + + L N D V   ++I ++  GL+  KR+I + TSG   ++ + G+ +  + L IS++A
Sbjct: 157 LQDSLLNMDVVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNA 216

Query: 246 VSN--DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
            ++    + +L  +N+ +    LI+  + Y  ++N  R+  EY+++  IND    A  L+
Sbjct: 217 SNSLIYQKIMLKKLNQNWSFLKLIEQIKAYTKITN-NRVVLEYLLIDKINDDLNYANELV 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI--KRSGYSSPIRTPRGLDILAA 361
           ++LK I   + LIP+N      Y  S   ++  F   +   +   S  IR    LDI   
Sbjct: 276 ELLKNILCYVLLIPYNLN---NYRTS--ANLDDFFNILSVNKIRISKRIRKSNDLDIS-- 328

Query: 362 CGQLK 366
             QLK
Sbjct: 329 FKQLK 333


>gi|68074255|ref|XP_679042.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56499685|emb|CAH98368.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 308

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 142/308 (46%), Gaps = 33/308 (10%)

Query: 21  LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI 80
           ++K+    R+ + R  QI   IY   I +   M +I  ++R  L   FS     I   K 
Sbjct: 10  IVKMIERNRYEKYRLKQITDNIYKGKIININNMKNIPTDIRKNLKNLFSENILSIKPIKE 69

Query: 81  SC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
              D   K L     +      +IE   +   S  +LC+SSQ+GCS  C FC TG   + 
Sbjct: 70  DKYDRAYKILFECKDK-----EKIEATALDFGSHTSLCISSQIGCSFACKFCATGQIGIK 124

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           R L  +EI  Q+L  +                  S    I N+  MGMGEPL N  NV +
Sbjct: 125 RQLELDEITDQLLYFQ------------------SKNVNIKNVSFMGMGEPLAN-PNVFE 165

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPIN 258
           ++   + S   S S RRI +ST G +P I ++ E    V L+ SLH+   + R+ LVPIN
Sbjct: 166 AIRFFNSSNFFSLSSRRINISTVGLLPGIKKLNELFPQVNLSFSLHSPFTEERDQLVPIN 225

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK-ILKGIPAK----- 312
           + +P   ++D        +N  R+   Y+++K +NDS   A  L + I+K  P+      
Sbjct: 226 KLFPFHEVLDLLDDRIEKTNR-RVWISYILIKDVNDSTDHAEALCEHIIKRPPSVRYLYN 284

Query: 313 INLIPFNP 320
           I LIP+N 
Sbjct: 285 ICLIPYNK 292


>gi|313610609|gb|EFR85705.1| ribosomal RNA large subunit methyltransferase N [Listeria
           monocytogenes FSL F2-208]
          Length = 171

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 101/169 (59%), Gaps = 6/169 (3%)

Query: 221 TSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           TSG  P I     E+  V LAISLHA +N+LR  ++ IN+ Y +E L++A  +Y   +N 
Sbjct: 1   TSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR 60

Query: 280 RRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVT 336
            RITFEY+MLKG+ND  ++AL L  +L      A +NLIP+NP     +Y  S ++D++ 
Sbjct: 61  -RITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLA 119

Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
           F + +K++G +  IR   G DI AACGQL+S   KR+    R + +   
Sbjct: 120 FYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAA 168


>gi|317488030|ref|ZP_07946611.1| hypothetical protein HMPREF1023_00309 [Eggerthella sp. 1_3_56FAA]
 gi|316912860|gb|EFV34388.1| hypothetical protein HMPREF1023_00309 [Eggerthella sp. 1_3_56FAA]
          Length = 195

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 2/188 (1%)

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235
           +K++ IV MGMGEPL N+DN+  ++ I  D  GL+F    IT+ST G V  + ++ EE +
Sbjct: 9   QKVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVNQLKKLREEHL 68

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
            + L ISLHA +   RN ++P    Y +E ++     Y    N  ++ F Y++L GIND 
Sbjct: 69  KIQLTISLHAATQAARNCIIPHMHMYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGINDR 127

Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
             D   L K  KG    IN++ +NP    +     ++++V F   ++++G    +R   G
Sbjct: 128 SSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRVSHG 187

Query: 356 LDILAACG 363
            +I AACG
Sbjct: 188 REIKAACG 195


>gi|186701974|ref|ZP_02971605.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186700738|gb|EDU19020.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 336

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 92/365 (25%), Positives = 168/365 (46%), Gaps = 45/365 (12%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66
           + +  +   EL+E L K+G+        + QI+ WIY + I +F   S+I++    +L +
Sbjct: 9   KEIYSLSLNELKEELFKLGL----KSFISKQIYSWIYQKRIFNFDKFSNIAKNNVIILKE 64

Query: 67  HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126
           +FS    +I   + + DG+ K+        I     I  + I  K+ G L   +  G + 
Sbjct: 65  NFSNNLLKINSYQSNSDGSIKFEFLTDKNLI-----INCMIIKFKN-GFLIKINPFGINF 118

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
                     K + NL+  E++LQ+LL +  L                    I+N+++ G
Sbjct: 119 K---------KEIINLSTNELVLQILLIQQFLDQRKLGN-------------ITNVIIKG 156

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
           + + L N D V   ++I ++  GL+  KR+I + TSG   ++ + G+ +  + L IS++A
Sbjct: 157 LQDILLNMDVVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNA 216

Query: 246 VSN--DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
            ++    + +L  +N+ +    LI+  + Y  ++N  R+  EY+++  IND    A  L+
Sbjct: 217 SNSLIYQKIMLKKLNQNWSFLKLIEQIKAYTKITN-NRVVLEYLLIDKINDDLNYANELV 275

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI--KRSGYSSPIRTPRGLDILAA 361
           ++LK I   + LIP+N      Y  S   ++  F   +   +   S  IR    LDI   
Sbjct: 276 ELLKNILCYVLLIPYNLN---NYRTS--ANLDDFFNILSVNKIRISKRIRKSNDLDIS-- 328

Query: 362 CGQLK 366
             QLK
Sbjct: 329 FKQLK 333


>gi|301119923|ref|XP_002907689.1| ribosomal RNA large subunit methyltransferase N, putative
           [Phytophthora infestans T30-4]
 gi|262106201|gb|EEY64253.1| ribosomal RNA large subunit methyltransferase N, putative
           [Phytophthora infestans T30-4]
          Length = 224

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/244 (31%), Positives = 115/244 (47%), Gaps = 34/244 (13%)

Query: 3   FLKKESLIGM---MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
            +KK +L  +    ++ L   L K    + H       IW+++       F  +  I + 
Sbjct: 1   MVKKRTLSPLPAFDQKALPVFLQKHDFKELH----ALTIWRYLAQHPDATFADIPGIPKT 56

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           +R LL +HF+     +  E+ S DGT K LL+          EIE V +    R TLCVS
Sbjct: 57  LRTLLGEHFAHFTTSVTTEQRSADGTVKLLLKLQD-----GHEIEAVIMRHTGRNTLCVS 111

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           SQVGC + C+FC TGT  ++ +L + EIL Q+  A  +                     I
Sbjct: 112 SQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANRVA-------------------PI 152

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VM 238
            N+V MGMGEPL N+D V  ++   +   GL+   + ITLST G +  I ++  +   V 
Sbjct: 153 RNVVFMGMGEPLNNYDAVLAAIRAMTKVFGLA--PKYITLSTVGVIHRIRQLSRDAPLVR 210

Query: 239 LAIS 242
           LA+S
Sbjct: 211 LALS 214


>gi|57505365|ref|ZP_00371294.1| radical SAM enzyme, Cfr family [Campylobacter upsaliensis RM3195]
 gi|57016501|gb|EAL53286.1| radical SAM enzyme, Cfr family [Campylobacter upsaliensis RM3195]
          Length = 286

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 97/208 (46%), Gaps = 40/208 (19%)

Query: 8   SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67
           +++ ++ EEL E        +     R  QI +WIY +   DF  MS++ + +R  L ++
Sbjct: 6   NILDLLPEELNE--------KIQPMFRVKQICQWIYQKYADDFSKMSNLPKNLREELAKN 57

Query: 68  FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------RG 114
           +     + + E+ S DG+ K+L           + IE+V +P K              + 
Sbjct: 58  YHFEPLKCIKEERSKDGSIKYLFELED-----GLRIESVLLPMKEEKFDEEGKRLSHAKF 112

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           T+CVSSQVGC   CSFC T    L RNL+A EI+ Q+L  +                   
Sbjct: 113 TICVSSQVGCRSGCSFCLTAKGGLKRNLSAGEIVGQILWIKRQN--------------HI 158

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLS 202
              +  NIV MGMGEPL N +NV K++ 
Sbjct: 159 PYERRVNIVYMGMGEPLDNLNNVAKAVR 186



 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 5/164 (3%)

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAIS-LHAVSNDLRNILVPINRKYPLEM---LID 268
           S     L+  G +      GE +G +L I   + +  + R  +V +    PL+    +  
Sbjct: 124 SGCSFCLTAKGGLKRNLSAGEIVGQILWIKRQNHIPYERRVNIVYMGMGEPLDNLNNVAK 183

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328
           A R +P +   +++ FEY+++ GIND    A  L+K+L GI AK+NLI FNP  G  Y  
Sbjct: 184 AVREFP-IDMRKKVMFEYLLIDGINDKIEHAKELVKLLNGIKAKVNLILFNPHQGSIYKR 242

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
            + ++ V F + + + G +  IR  +GLDI AACGQLK   K +
Sbjct: 243 PNLENAVKFQDLLSQKGVTCTIRESKGLDISAACGQLKEREKNL 286


>gi|330950790|gb|EGH51050.1| hypothetical protein PSYCIT7_05158 [Pseudomonas syringae Cit 7]
          Length = 158

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/137 (45%), Positives = 86/137 (62%), Gaps = 2/137 (1%)

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALN 301
           +HA ++ LRN LVP+N+KYPL+ML+++CR Y      +R+ T EY MLK IND    A+ 
Sbjct: 1   MHAPNDALRNQLVPLNKKYPLKMLLESCRRYMSNLGEKRVLTIEYTMLKDINDKVEHAVE 60

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           +I++LK  P KINLIPFNP+P   Y       I  F + + ++GY+  +RT RG DI AA
Sbjct: 61  MIELLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAA 120

Query: 362 CGQL-KSLSKRIPKVPR 377
           CGQL   +  R  +  R
Sbjct: 121 CGQLVGQVMDRTRRSER 137


>gi|225849839|ref|YP_002730073.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1]
 gi|225646250|gb|ACO04436.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1]
          Length = 271

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 72/280 (25%), Positives = 127/280 (45%), Gaps = 31/280 (11%)

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R           +E+VY       TLCVSSQ+GC + CSFC +G   L+RNL+ +EI+
Sbjct: 11  LNRLFEIETEDHFTVESVYYRGD---TLCVSSQLGCPVRCSFCASGMNGLIRNLSYDEII 67

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q  +A                   S G +I NI   G+GEPL N++NVKK+     D  
Sbjct: 68  DQYRIA------------------VSEGMEIKNIAFAGIGEPLLNWENVKKAFYHFKD-- 107

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
                 +    +T   + N   + E     +++SLHAV+++ R  L+P  +  PL+ ++D
Sbjct: 108 ---IGLKASFYTTGFPLKNFKELLELPHNGVSLSLHAVTDEKRKQLIPYGQ--PLDQILD 162

Query: 269 ACRHYPGL---SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
             + +         +  +  Y+++ G+NDS  +   L +I + +   ++L+ +N   G +
Sbjct: 163 VFKDHLSKLSRRKRKMYSIAYLLIGGVNDSEEEIQKLSQIARDLQVGVSLLKYNEIDGID 222

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           Y  +  ++       ++ +G    +        +  CG L
Sbjct: 223 YRSTSDEEYERVFLQLRENGIRVTLSNRYRTRKIGGCGTL 262


>gi|6434045|emb|CAB60749.1| hypothetical protein [Staphylococcus aureus]
          Length = 133

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 83/132 (62%), Gaps = 1/132 (0%)

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLHA  +++R+ L+PINR Y +E LI+A ++Y   +N  R+TFEY +  G+ND    A  
Sbjct: 1   SLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARE 59

Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361
           L  ++KG+   +NLIP N  P   Y+ + + DI  F + +KR G ++ IR  +G DI AA
Sbjct: 60  LAHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAA 119

Query: 362 CGQLKSLSKRIP 373
           CGQL++  +++ 
Sbjct: 120 CGQLRAKERQVE 131


>gi|323456324|gb|EGB12191.1| hypothetical protein AURANDRAFT_5797 [Aureococcus anophagefferens]
          Length = 234

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 110/247 (44%), Gaps = 22/247 (8%)

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C FC T    LVR LTA+EIL Q  +A  +  +                  ++NIV MGM
Sbjct: 1   CRFCATARMGLVRQLTADEILAQFAIAARVARESDAMP------------PLTNIVFMGM 48

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247
           G+   N D+VK + +   D      ++ +IT+ST G  P       +   MLA S+HA  
Sbjct: 49  GDAGRNVDHVKAAATSLVDGDKFRMARSKITISTVGPSPEAFAALADADGMLAWSIHAAD 108

Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKI 305
            DLR  LVP +R +PL  L            ARR  +     +++ +NDS  DA  L + 
Sbjct: 109 EDLRRKLVPSSR-HPLPELRRGLIDALEARPARRRTLMLAATLIRDVNDSDDDAAKLAEF 167

Query: 306 LKGI-----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTPRGLDI 358
           +  I        ++LIP NP    ++     + ++ ++  I+          R  RG D 
Sbjct: 168 IGPIVDAAGKCNVDLIPCNPTDHTDFESPSTERVLAYAAKIRELEPRVHVATRLQRGDDE 227

Query: 359 LAACGQL 365
            AACGQL
Sbjct: 228 SAACGQL 234


>gi|15606673|ref|NP_214053.1| hypothetical protein aq_1528 [Aquifex aeolicus VF5]
 gi|2983905|gb|AAC07456.1| hypothetical protein aq_1528 [Aquifex aeolicus VF5]
          Length = 270

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 42/293 (14%)

Query: 88  WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
           +L             +E+V+       TLCVS+QVGC + C+FC +G   L RNL+AEEI
Sbjct: 15  FLFELED-----GYTVESVFYRGD---TLCVSTQVGCPVRCTFCASGKNGLFRNLSAEEI 66

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
             Q  L +                       I  I + G+GEPL N+ NVK++       
Sbjct: 67  YNQYELLKDRY-------------------PIKRIAVAGIGEPLSNWRNVKEAFEKFKKE 107

Query: 208 MGLSFSKRRITLSTSGFV-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
                   +++  T+GF   ++  +       + ISLH+++++ R  L+P   K  LE +
Sbjct: 108 ------GLKVSFYTTGFPTKHLRELLHLPHSGVTISLHSLNDETRKYLMPHAGK--LEEV 159

Query: 267 IDACRHYPGL---SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
           I               ++++  Y++LK +NDS  +   L ++ K +   I L+ +N    
Sbjct: 160 IKVLEEELPKLSSKKRKKVSLAYILLKDVNDSQEELEKLAELAKRLGVSITLLYYNKT-- 217

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL-KSLSKRIPKV 375
            E+    +K+       ++  G    + T    D L  CG L  + +K + KV
Sbjct: 218 FEFEPVSEKEYEEAFLFLRSKGVRVTLSTRFRKDKLGGCGTLVVNRNKELTKV 270


>gi|225860741|ref|YP_002742250.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229131|ref|ZP_06962812.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255804|ref|ZP_06979390.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|225727931|gb|ACO23782.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|327390124|gb|EGE88467.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
           pneumoniae GA04375]
          Length = 300

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 24/192 (12%)

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVG-----------------EEIGVMLAISLHA 245
             +  +G +      T   SG +     +                  E + V LA+SLHA
Sbjct: 104 CVTTQVGCNIGC---TFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHA 160

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L ++
Sbjct: 161 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAEL 219

Query: 306 LKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AAC
Sbjct: 220 LKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAAC 279

Query: 363 GQLKSLSKRIPK 374
           GQL+  + +  +
Sbjct: 280 GQLRFNTMKRDR 291



 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 99/197 (50%), Gaps = 12/197 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + +++ +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQKWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QVGC+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    D     ++   +        S+I+ +
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKI 172

Query: 186 GMGEPLCNFDNVKKSLS 202
               P    + +  ++ 
Sbjct: 173 NRAFP---IEKLFAAIE 186


>gi|298502552|ref|YP_003724492.1| Fe-S-cluster redox enzyme [Streptococcus pneumoniae TCH8431/19A]
 gi|298238147|gb|ADI69278.1| Fe-S-cluster redox enzyme [Streptococcus pneumoniae TCH8431/19A]
          Length = 288

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 24/192 (12%)

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVG-----------------EEIGVMLAISLHA 245
             +  +G +      T   SG +     +                  E + V LA+SLHA
Sbjct: 92  CVTTQVGCNIGC---TFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHA 148

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML  +ND    AL L ++
Sbjct: 149 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAEL 207

Query: 306 LKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
           LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G +  +R   G DI AAC
Sbjct: 208 LKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAAC 267

Query: 363 GQLKSLSKRIPK 374
           GQL+  + +  +
Sbjct: 268 GQLRFNTMKRDR 279



 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 94/186 (50%), Gaps = 12/186 (6%)

Query: 17  LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76
           +++ +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN  F +   +  
Sbjct: 1   MQKWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQR 56

Query: 77  DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136
             + S DGT K+L   P   +     IETV + +    ++CV++QVGC++ C+FC +G  
Sbjct: 57  IVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLI 111

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196
           K  R+L   EI+ Q++L +    D     ++   +        S+I+ +    P    + 
Sbjct: 112 KKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKINRAFP---IEK 168

Query: 197 VKKSLS 202
           +  ++ 
Sbjct: 169 LFAAIE 174


>gi|225854275|ref|YP_002735787.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae JJA]
 gi|225722744|gb|ACO18597.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae JJA]
          Length = 300

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/148 (37%), Positives = 90/148 (60%), Gaps = 5/148 (3%)

Query: 231 VGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
             +E + V LA+SLHA +N+LR+ ++ INR +P+E L  A  +Y   +N  R+TFEY+ML
Sbjct: 145 FADEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIML 203

Query: 290 KGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGY 346
             +ND    AL L ++LK I   + +NLIP+NP    + Y  S ++ ++ F + +K+ G 
Sbjct: 204 NEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGG 263

Query: 347 SSPIRTPRGLDILAACGQLKSLSKRIPK 374
           +  +R   G DI AACGQL+  + +  +
Sbjct: 264 NCVVRQEHGTDIDAACGQLRFNTMKRDR 291



 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 98/197 (49%), Gaps = 12/197 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K S+  +  + ++E +L+ G      + R  QIW+W+Y + ++ F+ M+++S+++   LN
Sbjct: 2   KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F +   +    + S DGT K+L   P   +     IETV + +    ++CV++QV C+
Sbjct: 58  DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVSCN 112

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C+FC +G  K  R+L   EI+ Q++L +    D     ++   +        S+I+ +
Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKI 172

Query: 186 GMGEPLCNFDNVKKSLS 202
               P    + +  ++ 
Sbjct: 173 NRAFP---IEKLFAAIE 186


>gi|225456810|ref|XP_002275716.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 198

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 95/175 (54%), Gaps = 5/175 (2%)

Query: 196 NVKKSLSIASDSMGLSF--SKRRITLSTSG---FVPNIARVGEEIGVMLAISLHAVSNDL 250
               +L       GL+   S  RI  S  G   +   +     E    LA+SL+A +N++
Sbjct: 2   AFINTLEQCVSVAGLAIKASTGRIESSGMGSTMWRNKLKHFLRESNCALAVSLNATTNEV 61

Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310
           RN ++PINRKY L +L+   R      +  ++ FEYVML G+NDS  DA  LI +++GIP
Sbjct: 62  RNWVMPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVNDSLEDARRLIDLVQGIP 121

Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            K+NLI FNP  G ++  + ++ I+ F   +  +G    +R  RG D +AACGQL
Sbjct: 122 CKVNLISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPSRGDDQMAACGQL 176


>gi|188996350|ref|YP_001930601.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931417|gb|ACD66047.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 269

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/278 (26%), Positives = 127/278 (45%), Gaps = 34/278 (12%)

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                      IE+V      R TLCVSSQVGCS+ C+FC +G   L+RNL+++EI+ Q 
Sbjct: 14  LLEIKTDDGYTIESV----HYRTTLCVSSQVGCSVRCAFCASGLNGLIRNLSSQEIINQF 69

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            +A+                    G +I+NI   G+GEPL NF+NVK++       +GL 
Sbjct: 70  EIAKDQ------------------GFEITNIAFAGIGEPLLNFENVKQAFDYFKS-IGL- 109

Query: 212 FSKRRITLSTSGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
               +++  T+GF +     +       L +SLH+V  + R  L+P +    +E LI   
Sbjct: 110 ----KVSFYTTGFPIKYFKELLHLNHDGLTLSLHSVLEEKRKSLIPNSH--SIEELIQVF 163

Query: 271 RHYPG-LSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
            ++   LS+ +R   +  Y+++ G NDS  +   L  I K +   ++L+ +N      + 
Sbjct: 164 ENHLKTLSSRKRKLYSIGYLLIYGENDSDEELEALANIAKRLNIGVSLLKYNEIESLPFK 223

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +  ++       +K  G  + +        +  CG L
Sbjct: 224 TTPDEEYEKAFLKLKSHGVRTTLSNRYRTRKIGGCGTL 261


>gi|222872785|gb|EEF09916.1| predicted protein [Populus trichocarpa]
          Length = 302

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/119 (60%), Positives = 94/119 (78%)

Query: 3   FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62
            ++K+ LIG+ REE+ +AL  IG+P+R V MR  Q+W W+YVRG+ DF  M +IS+E+R 
Sbjct: 184 TVEKKPLIGLSREEMAQALASIGVPERQVNMRVRQLWHWLYVRGVSDFSRMFNISKELRA 243

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            L++HF+I  PEIV+E+IS DGTRKWLLRFP R  G PVE+ETVYIPE+ RGTLC+SSQ
Sbjct: 244 KLDEHFTIARPEIVEEQISQDGTRKWLLRFPPRGAGRPVEVETVYIPEEDRGTLCISSQ 302


>gi|163785797|ref|ZP_02180287.1| hypothetical protein HG1285_18936 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159878935|gb|EDP72949.1| hypothetical protein HG1285_18936 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 265

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 74/281 (26%), Positives = 123/281 (43%), Gaps = 35/281 (12%)

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L +           IE+V+       TLCVSSQVGC + C+FC +G + L+RNL+ EEI+
Sbjct: 6   LNKLYEFETKDSYTIESVFYR---GNTLCVSSQVGCPVECAFCASGMKGLIRNLSFEEII 62

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q                       S    I+NI   G+GEPL N+DNVKK+        
Sbjct: 63  DQY--------------------ENSDKENITNITFAGIGEPLLNWDNVKKAFFYF-KEK 101

Query: 209 GLSFSKRRITLSTSGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           GL     +++  T+GF V N   +       + +S+HAV+ + R  L+P  +    + LI
Sbjct: 102 GL-----KVSFYTTGFPVKNFKELLNLPHNGITLSIHAVNEEKRKKLIP--KSVDFDKLI 154

Query: 268 DACRHYPGL---SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
           +  + +         +  +  Y+++K +NDS  +   L +I K +   ++L+ FN   G 
Sbjct: 155 ETFKQHLDKLSKRKKKNYSIAYLLIKNVNDSKEELKKLAEIAKYLQVGVSLLKFNEIEGI 214

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +  +  ++       +K  G    +        +  CG L
Sbjct: 215 NFKTTPDEEYEKAFLFLKNEGVKVTLSNKYRTRKIGGCGTL 255


>gi|294955468|ref|XP_002788520.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239904061|gb|EER20316.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 242

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 82/187 (43%), Gaps = 19/187 (10%)

Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
               +R IT+ST G +P I  +  +  GV LA+SLHA +  LR  +VP  + + ++ L+ 
Sbjct: 5   FGIPQRCITVSTVGVIPRIRSLAHDASGVKLALSLHAPTQALREKIVPSAKAWSIDELMA 64

Query: 269 ACRHYPGLSN--------------ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
           A   Y   S                  +  EYV+++ +ND+   A  L  ++K   A +N
Sbjct: 65  AVDEYSEASRVAGRPDGSGGGGRKKGSVMIEYVVIRDVNDTEECAHQLGVLMKNRKAVVN 124

Query: 315 LIPFNPWP-GCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSLSKRI 372
            IP+N    G  +    +  +      +K   G     R   G DI AACGQL    KR 
Sbjct: 125 FIPYNAVDNGSNFEPPLESSVTRMVSILKDVYGVRVYYRRHHGRDIDAACGQLA--KKRP 182

Query: 373 PKVPRQE 379
             VP  E
Sbjct: 183 RMVPDLE 189


>gi|237756412|ref|ZP_04584954.1| radical SAM protein [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691428|gb|EEP60494.1| radical SAM protein [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 269

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/278 (26%), Positives = 127/278 (45%), Gaps = 34/278 (12%)

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                      IE+V      R TLCVSSQVGCS+ C+FC +G   L+RNL+++EI+ Q 
Sbjct: 14  LLEIKTDDGYTIESV----HYRTTLCVSSQVGCSVRCAFCASGLNGLMRNLSSQEIINQY 69

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
            +A+                    G +I+NI   G+GEPL NF+NVK++       +GL 
Sbjct: 70  EIAKD------------------KGFEITNIAFAGIGEPLLNFENVKQAFDYFKS-IGL- 109

Query: 212 FSKRRITLSTSGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
               +++  T+GF +     +       L +SLH+V  + R  L+P +    +E LI   
Sbjct: 110 ----KVSFYTTGFPIKYFKELLHLNHDGLTLSLHSVLEEKRKSLIPNSH--SIEELIQVF 163

Query: 271 RHYPG-LSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
            ++   LS+ +R   +  Y+++ G NDS  +   L  I K +   + L+ +N      + 
Sbjct: 164 ENHLKTLSSRKRKLYSIGYLLIYGENDSDEELEALANIAKRLNIGVFLLKYNEIESLPFK 223

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +  ++       +K +G  + +        +  CG L
Sbjct: 224 TTPDEEYEKAFLKLKSNGVRTTLSNRYRTRKIGGCGTL 261


>gi|330894490|gb|EGH27151.1| radical SAM protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 131

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/129 (44%), Positives = 80/129 (62%), Gaps = 9/129 (6%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K +L+G+ ++E+E+    IG      R R  Q+ KWI+  G+ DF  M+++S+ +R  L 
Sbjct: 12  KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 67

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
               +  PE+V E IS DGTRKW++R  +        +ETVYIP+  RGTLCVSSQ GC+
Sbjct: 68  ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 122

Query: 126 LTCSFCYTG 134
           L CSFC TG
Sbjct: 123 LDCSFCSTG 131


>gi|307108510|gb|EFN56750.1| hypothetical protein CHLNCDRAFT_22096 [Chlorella variabilis]
          Length = 204

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 23/174 (13%)

Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           IT+ST G +P + R   E   ++A+SLHA ++++R+ +VP+NR+  L+ LI+        
Sbjct: 2   ITVSTVGLIPEMRRFSRESRAVMAVSLHATTDEVRDWIVPVNRREGLQALIECMEELFPK 61

Query: 277 S-----NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           S     +   +  EY+ML+G+NDS  DA  L+++ + I  KINLI FNP  G  +  S  
Sbjct: 62  SSAAPRHGHHVLIEYIMLRGVNDSDDDARRLVQLTQSIRCKINLIVFNPHAGTSFQPSTP 121

Query: 332 KDIVTFSECIKRSG------------------YSSPIRTPRGLDILAACGQLKS 367
           + +  F   + ++                   + + +R  RG D +AACGQL S
Sbjct: 122 ERVYAFRSILIQARRPQQHTHSLTATHTQPHCHVATVRDSRGDDQMAACGQLGS 175


>gi|226503103|ref|NP_001141039.1| hypothetical protein LOC100273119 [Zea mays]
 gi|194702344|gb|ACF85256.1| unknown [Zea mays]
          Length = 194

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 68/160 (42%), Positives = 94/160 (58%), Gaps = 15/160 (9%)

Query: 96  CIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154
            +     IETV IP  + R T+CVSSQVGC++ C FC+TG   L ++L+  EI+ Q + A
Sbjct: 12  SLEDGSVIETVIIPCARGRTTICVSSQVGCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFA 71

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
           R L  D  G               I+N+V MGMGEP  N DNV K+ +I  D  GL FS 
Sbjct: 72  RRLFSDELGS--------------INNVVFMGMGEPFHNIDNVIKASAIMVDEQGLHFSP 117

Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNIL 254
           R++T+STSG VP + R  +E    LA+SL+A ++++  IL
Sbjct: 118 RKVTVSTSGLVPQLKRFLQESNCSLAVSLNATTDEVVIIL 157


>gi|289548559|ref|YP_003473547.1| radical SAM protein [Thermocrinis albus DSM 14484]
 gi|289182176|gb|ADC89420.1| Radical SAM domain protein [Thermocrinis albus DSM 14484]
          Length = 270

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 73/282 (25%), Positives = 120/282 (42%), Gaps = 40/282 (14%)

Query: 88  WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
           +L +           IE V+       TLCVS+QVGC++ C+FC +G+  L+RNL+ +EI
Sbjct: 15  YLFQLED-----GSRIEAVFYRGD---TLCVSTQVGCAVGCAFCLSGSAGLLRNLSEDEI 66

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
            +Q  L +  L                    I  +   G+GEPL N+ NV  +       
Sbjct: 67  YMQYFLLKPFL-------------------PIRRVAFAGIGEPLMNYRNVLGAFERFKRE 107

Query: 208 MGLSFSKRRITLSTSG-FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
            GL      +T  T+G  + ++  + +     + ISLH +   LR  L+P      LE L
Sbjct: 108 -GLG-----VTFYTTGHPIKHLPSLLDLPHRGVTISLHTLDPSLRKKLLPHAG--DLEEL 159

Query: 267 IDACRHY---PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
           I   + Y          +I+  Y++LKG+NDSP +     +++K +     L+ +N   G
Sbjct: 160 IALLKDYSKKISKRKKGKISLAYLLLKGVNDSPEEIKAFGRLVKELGFSATLLYYNDT-G 218

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
             +     ++       ++  G    + T    D L  CG L
Sbjct: 219 MGFQAVTPEEYSKAFLLLRSMGVRVTLSTRYRRDPLGGCGTL 260


>gi|319789396|ref|YP_004151029.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
 gi|317113898|gb|ADU96388.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1]
          Length = 271

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 118/281 (41%), Gaps = 34/281 (12%)

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R           +E+V+   +    LCVSSQVGC + C+FC +G + L RNL+AEEI 
Sbjct: 11  LNRLFIYETADGYRVESVFYKGER---LCVSSQVGCPVGCAFCASGLKGLKRNLSAEEIY 67

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q                     +      I  I + G+GEP  N D+V +++       
Sbjct: 68  AQY-------------------SLLKGELPIRGIAIAGIGEPALNADSVVEAIGRFKKE- 107

Query: 209 GLSFSKRRITLSTSGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
                  ++T+S++G  +    ++ E     L IS+HAV   +R  L  +  K P+E ++
Sbjct: 108 -----GLKVTVSSTGCDLEGFRKLVEAPHNGLTISVHAVKPHIRERLFKL--KQPIEKVL 160

Query: 268 DACRHYPGLSNARR---ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
           +    +   S++ R       Y+++KG+ND       L ++ K     + L+ +N   G 
Sbjct: 161 EVVEEHLERSSSSRRKRFQLGYLLIKGVNDDEESLKLLAELAKRHRFTVMLMAYNEVEGL 220

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +    +++       ++  G    +      D L  CG L
Sbjct: 221 PFKGLSEEEYEKAFLKLRELGVRVTLSNRFRRDKLGGCGTL 261


>gi|288817723|ref|YP_003432070.1| putative Fe-S cluster redox enzyme [Hydrogenobacter thermophilus
           TK-6]
 gi|288787122|dbj|BAI68869.1| putative Fe-S cluster redox enzyme [Hydrogenobacter thermophilus
           TK-6]
 gi|308751322|gb|ADO44805.1| Radical SAM domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 264

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/281 (25%), Positives = 119/281 (42%), Gaps = 36/281 (12%)

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R     +    +IE V+       TLC+S+QVGC++ C FC +G+   VRNLT EEIL
Sbjct: 11  LNRLFVFELEDSNKIEAVFYRGD---TLCISTQVGCAIRCPFCLSGSAGFVRNLTYEEIL 67

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q  L R  L                    I  I + G+GEPL N+ +V ++     +  
Sbjct: 68  AQYYLLRDTL-------------------PIKRIAVAGIGEPLMNYSHVIRAFWKFKEE- 107

Query: 209 GLSFSKRRITLSTSGFVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
                  +++  T+GF   ++  +       L IS+H+  ++ R  L+P      L  LI
Sbjct: 108 -----GLKVSFYTTGFPHIHLRELIHIPHNGLTISIHSTKSEKRRKLIPHGG--DLNALI 160

Query: 268 DACRH---YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
           D  R           ++++  Y++LKG+NDS  D     K+++ +     L+ +N     
Sbjct: 161 DMLREELPRMSKRKRKKVSLAYLLLKGVNDSYEDLEEFAKLVRDLGVSATLLYYNST--G 218

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
            +    + +       ++  G    + T    D L  CG L
Sbjct: 219 FFETMSKSEYEERFLYLRGYGIRVSLSTRFRKDSLGGCGTL 259


>gi|225848095|ref|YP_002728258.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643916|gb|ACN98966.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 276

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 112/271 (41%), Gaps = 30/271 (11%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
                 IE+V      R TLCVSSQVGCS+ CSFC +G   L RNL+ +EI+ Q L+ + 
Sbjct: 19  TDDGYTIESV----HYRKTLCVSSQVGCSIKCSFCASGLNGLTRNLSFDEIINQYLMVKD 74

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
                              G +I +I   G+GEPL N++NVK++        GLS S   
Sbjct: 75  ------------------KGYEIESIAFAGIGEPLLNWENVKQAFDYFKS-QGLSVSF-- 113

Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP--LEMLIDACRHYP 274
              +T   + N  ++       + +SLH+V  + R  L+P +      +++  D  +   
Sbjct: 114 --YTTGFPISNFKQLLALNHDGVNLSLHSVFEEKRKSLIPNSHTISQLIQVFKDHLQQLS 171

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334
                      Y+++ G NDS  +   L +I K +   ++L+ +N      Y        
Sbjct: 172 NRKKKL-YNIAYILIYGENDSYEEIDKLGEIAKELGIGVSLLKYNEIEFFPYKSVPDDRY 230

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
                 ++  G    +        +  CG L
Sbjct: 231 EELFLRLREKGIRVTLSNKYRTRKIGGCGTL 261


>gi|294670880|ref|ZP_06735736.1| hypothetical protein NEIELOOT_02584 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307367|gb|EFE48610.1| hypothetical protein NEIELOOT_02584 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 120

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 2/113 (1%)

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           + ACR Y   +    +TFEYVML GIND    A  L+ +++ +P K NLIPFNP+P   Y
Sbjct: 1   MAACRRYLVKAPRDFVTFEYVMLDGINDKAEHARELLALVRDVPCKFNLIPFNPFPNSGY 60

Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
             S  ++I  F + ++++G    +R  RG DI AACGQL    +   K  RQ+
Sbjct: 61  ERSSSENIRIFRDILQQAGLVVTVRKTRGDDIDAACGQLAGQVQ--DKTRRQQ 111


>gi|313625007|gb|EFR94900.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
           FSL J1-023]
          Length = 130

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 77/139 (55%), Gaps = 9/139 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +   E    + S DGT K+L +     +     IETV + ++   ++CV++QVG
Sbjct: 57  LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRNL 142
           C++ C+FC +G  K  R+L
Sbjct: 112 CNIGCTFCASGLLKKSRDL 130


>gi|313620453|gb|EFR91838.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
           FSL S4-378]
          Length = 129

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 76/138 (55%), Gaps = 9/138 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +   E    + S DGT K+L +     +     IETV + ++   ++CV++QVG
Sbjct: 57  LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVRN 141
           C++ C+FC +G  K  R+
Sbjct: 112 CNIGCTFCASGLLKKSRD 129


>gi|325295135|ref|YP_004281649.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065583|gb|ADY73590.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 270

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 126/289 (43%), Gaps = 35/289 (12%)

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L +          ++E+V+   +    LC+S+QVGC + C FC +G++   RNLT  EI+
Sbjct: 11  LNKLFVYETDDGYKVESVFYKGER---LCISTQVGCPIGCIFCASGSKGFFRNLTFAEIV 67

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q  L R +L                    I  I + G+GEP  N  NV+K+++   +  
Sbjct: 68  TQYELLRDIL-------------------PIKGIAIAGIGEPALNISNVEKAVNYFRNE- 107

Query: 209 GLSFSKRRITLSTSGFV-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
                  ++T+ST+G+   N  ++       L +S+H + N  R  +    +K  LE L+
Sbjct: 108 -----GLKVTISTAGYPLENFKKLIRLNHNGLTLSVHGILNKTREKIFK--KKENLEELL 160

Query: 268 DACRHYPGLSNARR---ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
           +A   +   S++ R       Y+++K +ND   +   L ++ K     + L+ +N   G 
Sbjct: 161 NAVDEHLSESSSSRRKKFQLGYLLIKDLNDDLENLRLLGELAKKYRFTVMLMMYNKVDGF 220

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373
           +     + +       ++  G    +     +D L  CG L ++ +RI 
Sbjct: 221 DLEPVTKDEYEKAFLFLREMGVRVTLSNRFRIDKLGGCGTL-TVGRRIE 268


>gi|313610614|gb|EFR85708.1| ribosomal RNA large subunit methyltransferase N [Listeria
           monocytogenes FSL F2-208]
          Length = 129

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 9/137 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +   E    + S DGT K+L +     +     IETV + ++   ++CV++QVG
Sbjct: 57  LTANFVMNTLEEQVVQESADGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVR 140
           C++ C+FC +G  K  R
Sbjct: 112 CNIGCTFCASGLLKKSR 128


>gi|212634295|ref|YP_002310820.1| hypothetical protein swp_1447 [Shewanella piezotolerans WP3]
 gi|212555779|gb|ACJ28233.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 137

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 9/131 (6%)

Query: 10  IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69
           + + R+ +      +G        R  Q+ KW+Y  G+ DF+ M++I++ +R  L +   
Sbjct: 1   MDLDRKSMRALFADMG----EKPFRADQLMKWLYHFGVSDFEQMTNINKALRAKLARKCE 56

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           I+ P+I   + S DGT K+ +      +G   E+ETVYIPE  R TLCVSSQVGC+L C+
Sbjct: 57  IVAPKIASYQKSADGTIKFAI-----DVGNGQEVETVYIPEDDRATLCVSSQVGCALECT 111

Query: 130 FCYTGTQKLVR 140
           FC TG Q   R
Sbjct: 112 FCSTGAQGFNR 122


>gi|315281046|ref|ZP_07869770.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii
           FSL S4-120]
 gi|313615310|gb|EFR88731.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii
           FSL S4-120]
          Length = 128

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 9/137 (6%)

Query: 4   LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
           ++K S+ G+    L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1   MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64  LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123
           L  +F +   E    + S DGT K+L +     +     IETV + ++   ++CV++QVG
Sbjct: 57  LTANFVMNTLEEQVVQESADGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111

Query: 124 CSLTCSFCYTGTQKLVR 140
           C++ C+FC +G  K  R
Sbjct: 112 CNIGCTFCASGLLKKSR 128


>gi|163781579|ref|ZP_02176579.1| hypothetical protein HG1285_01813 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882799|gb|EDP76303.1| hypothetical protein HG1285_01813 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 274

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 38/296 (12%)

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L R     +     +E V+       TLCVS+QVGC + C FC +G + L+RNL+ EEI+
Sbjct: 11  LNRLFIFELEDGFAVEAVHYRGD---TLCVSTQVGCHVRCGFCASGRRGLIRNLSEEEIV 67

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q  L R                      ++  I + G+GEPL N+D+V+ +     +  
Sbjct: 68  SQYELVR-------------------PKFEVRRIAVAGIGEPLANWDSVRGAFYRFKE-- 106

Query: 209 GLSFSKRRITLSTSGFV-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
               S  R++  T+G+   N+  +       +++S+H++    R  L+P      L  LI
Sbjct: 107 ---LS-LRVSFYTTGYPLKNLRELLHMPHGGVSLSIHSLDRSTRKELMPYAG--DLGRLI 160

Query: 268 DACR-HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324
           D  R   P L+  +R  ++  Y+++KG+NDS  + + L K+ + +   + L+ +N     
Sbjct: 161 DFLRGELPSLTGKKRKKVSLAYLLIKGVNDSEDELIELGKLARELGVGVTLLYYNQV--S 218

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEM 380
            Y     ++       ++  G    +      D +  CG L     R   +  QE+
Sbjct: 219 SYPQLTPEEYERAFLLLRSMGVKVTLSNRFRKDKIGGCGTL--TVDRNADIKSQEV 272


>gi|300858725|ref|YP_003783708.1| hypothetical protein cpfrc_01308 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686179|gb|ADK29101.1| hypothetical protein cpfrc_01308 [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 213

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 24/188 (12%)

Query: 2   NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
             +  +       EE   AL ++G+P    + R +QI +  Y R   D + M+D+   VR
Sbjct: 45  RSMPPKHFADYTVEERISALKELGLP----KFRANQIARHYYGRLEADPRTMTDLPAGVR 100

Query: 62  HLLNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
             + +  F ++   I   +     T+K L +     +     +E+V +   +R TLC+SS
Sbjct: 101 EKVQEKLFPVLMNPIRAIETDAGETQKTLWQLHDGTL-----LESVLMRYPNRATLCISS 155

Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           Q GC + C FC TG   L RNL+  EI+ QV  A                 + + G ++S
Sbjct: 156 QAGCGMACPFCATGQGGLDRNLSTAEIVDQVRAA--------------SATMNAEGGRLS 201

Query: 181 NIVMMGMG 188
           NIV MGMG
Sbjct: 202 NIVFMGMG 209


>gi|255640205|gb|ACU20393.1| unknown [Glycine max]
          Length = 271

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 48/251 (19%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIY---VRGIRDFQ-GMSDISQEVRHLLNQHF-SI 70
           EL   + K GI  + +     +IWK I         D++  +  +      LL  +F + 
Sbjct: 11  ELRREVEKSGIDPKFIP----KIWKHILISAKDEDWDWEKQVPSLPSSAYSLLRSNFKTP 66

Query: 71  IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------T 115
           +   I     S D  T K L++           +E V +   +R               T
Sbjct: 67  LSSSIHSVFHSADNLTTKLLIQLHHNH---GPFVEAVIMRYDTRLGKYAGQPRPGGLRAT 123

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           LC+SSQVGC + C+FC TG+     NL++ EI+ Q++ A                   S 
Sbjct: 124 LCISSQVGCKMGCNFCATGSMGFKNNLSSGEIVEQLVHA-------------------ST 164

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
             +I N+V MGMGEPL N+  V +++ I +  +    S +RIT+ST G +  I ++ +++
Sbjct: 165 FSQIRNVVFMGMGEPLNNYSAVVEAVRIMT-GLPFQLSSKRITISTVGIIHAINKLHDDL 223

Query: 236 G-VMLAISLHA 245
             + LA+SLHA
Sbjct: 224 PGLNLAVSLHA 234


>gi|270593980|ref|ZP_06221492.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae HK1212]
 gi|270318367|gb|EFA29514.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae HK1212]
          Length = 129

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/118 (40%), Positives = 64/118 (54%), Gaps = 4/118 (3%)

Query: 266 LIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323
           +ID+   Y  +SNA   ++T EYVML  +ND    A  L ++LK  P KINLIP+NP+P 
Sbjct: 1   MIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQLAEVLKNTPCKINLIPWNPFPE 60

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
             Y  S    I  F + +   G++  IR  RG DI AACGQL      I +  R  M+
Sbjct: 61  APYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDV--IDRTKRTAMK 116


>gi|295113298|emb|CBL31935.1| hypothetical protein [Enterococcus sp. 7L76]
          Length = 114

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC 324
           + A   Y   +N  R+TFEY+ML  +ND P  A  L  +L+     + +NLIP+NP    
Sbjct: 1   MAAIDEYIEKNNR-RVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVSEH 59

Query: 325 E-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQ 378
           + Y  S ++ ++ F + +K++G +  IR   G DI AACGQL+S   +  KV  Q
Sbjct: 60  DQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDIDAACGQLRSKQMKKEKVKNQ 114


>gi|291287083|ref|YP_003503899.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884243|gb|ADD67943.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 256

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 111/285 (38%), Gaps = 51/285 (17%)

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
                +     +ETVY      GTLC+S+Q GC + C FC +G   L RNL+++E+  QV
Sbjct: 5   LLPLELSDGFCLETVYY---ESGTLCISTQAGCRMACPFCASGRVGLKRNLSSDELFTQV 61

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
                                   G  I  + + G+GEPL NF+ VK+ +          
Sbjct: 62  --------------------ELHKGNDIKRVTLSGIGEPLDNFEVVKEFIK--------- 92

Query: 212 FSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
             K    +S +  VP+  ++ E +      + +S HA  ++ R  L+P   +  L+ +  
Sbjct: 93  --KSGYPVSVTTSVPDTEKLKELLKLSHNGVMLSFHAGFDETRKKLIPKACQ--LDEIFH 148

Query: 269 ACRHY---PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGC 324
           A         ++  +++ F Y++L GINDS  +       +       ++L+  N   G 
Sbjct: 149 AVSEVWSEISVNKRKKVGFNYMLLDGINDSAEELDAFAGQVTNFKEVTVHLLVCNDVSGS 208

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPI----RTPRGLDILAACGQL 365
            +            E ++ +G +       R          CG L
Sbjct: 209 SFKSPSVCVFTDAYELLRNNGLNVRRANNWRKS----SNGGCGTL 249


>gi|146319329|ref|YP_001199041.1| Fe-S-cluster redox protein [Streptococcus suis 05ZYH33]
 gi|145690135|gb|ABP90641.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis 05ZYH33]
          Length = 140

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 4/123 (3%)

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AK 312
           + INRK+P+E+L +A   Y  ++N  R+TFEY+ML  +ND    A  L  + K I   + 
Sbjct: 1   MRINRKFPIEVLFEAIEDYIKVTNR-RVTFEYIMLNEVNDGVEQAQELADLTKNIRKLSY 59

Query: 313 INLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371
           INLIP+NP    + Y  S ++  + F + +K++G +  +R   G DI AACGQL+S + +
Sbjct: 60  INLIPYNPVSEHDQYSRSTKERTLAFFDVLKKNGVNCVVRQEHGTDIDAACGQLRSNTLK 119

Query: 372 IPK 374
             +
Sbjct: 120 KDR 122


>gi|297733650|emb|CBI14897.3| unnamed protein product [Vitis vinifera]
          Length = 133

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/111 (42%), Positives = 68/111 (61%)

Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
           +PINRKY L +L+   R      +  ++ FEYVML G+NDS  DA  LI +++GIP K+N
Sbjct: 1   MPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVNDSLEDARRLIDLVQGIPCKVN 60

Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
           LI FNP  G ++  + ++ I+ F   +  +G    +R  RG D +AACGQL
Sbjct: 61  LISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPSRGDDQMAACGQL 111


>gi|294942772|ref|XP_002783678.1| hypothetical protein Pmar_PMAR008379 [Perkinsus marinus ATCC 50983]
 gi|239896201|gb|EER15474.1| hypothetical protein Pmar_PMAR008379 [Perkinsus marinus ATCC 50983]
          Length = 188

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 18/157 (11%)

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--------------ARRITF 284
           LA+SLHA +  LR  +VP  + + ++ L+ A   Y   S                  +  
Sbjct: 2   LALSLHAPNQALREKIVPSAKAWSIDELMAAVDEYSEASRVAGRPDGSGGGGRKKGSVMI 61

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKR 343
           EYV+++ +ND+   A  L  ++K   A +N IP+N    G  +    +  +      +K 
Sbjct: 62  EYVVIRDVNDTEECAHQLGVLMKNRKAVVNFIPYNAVDNGSNFEPPLESSVTRMVSILKD 121

Query: 344 -SGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
             G     R   G DI AACGQL    KR   VP  E
Sbjct: 122 VYGVRVYYRRHHGRDIDAACGQLA--KKRPRMVPDLE 156


>gi|330975901|gb|EGH75967.1| hypothetical protein PSYAP_04494 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 120

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/97 (44%), Positives = 57/97 (58%), Gaps = 1/97 (1%)

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           +T EY MLK IND    A+ +I++LK  P KINLIPFNP+P   Y       I  F + +
Sbjct: 3   LTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLL 62

Query: 342 KRSGYSSPIRTPRGLDILAACGQL-KSLSKRIPKVPR 377
            ++GY+  +RT RG DI AACGQL   +  R  +  R
Sbjct: 63  HQAGYNVTVRTTRGEDIDAACGQLVGQVMDRTRRSER 99


>gi|190150593|ref|YP_001969118.1| UPF0063 protein yfgB [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|189915724|gb|ACE61976.1| UPF0063 protein yfgB [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
          Length = 110

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 52/98 (53%)

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           +T EYV+L  +ND    A  L ++LK  P KINLIP+NP+P   Y  S    +  F + +
Sbjct: 1   MTIEYVLLDHVNDGTEHAHQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTL 60

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
              G++  +R  RG DI AACGQL        K   ++
Sbjct: 61  MEYGFTVIVRKTRGDDIDAACGQLAGDVIDRTKRTMEK 98


>gi|15610017|ref|NP_217396.1| hypothetical protein Rv2880c [Mycobacterium tuberculosis H37Rv]
 gi|148662724|ref|YP_001284247.1| hypothetical protein MRA_2905 [Mycobacterium tuberculosis H37Ra]
 gi|1403400|emb|CAA98356.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148506876|gb|ABQ74685.1| hypothetical protein MRA_2905 [Mycobacterium tuberculosis H37Ra]
          Length = 275

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 76/183 (41%), Gaps = 23/183 (12%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN- 65
             L  +       A+ ++G+P      R  Q+    Y R I D + M+D+   VR  +  
Sbjct: 17  RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
             F  +     D       TRK L R            E+V +    R T+C+SSQ GC 
Sbjct: 73  AMFPNLLTASADITCDAGQTRKTLWR-----AVDGTMFESVLMRYPRRNTVCISSQAGCG 127

Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
           + C FC TG   L RNL+  EIL QV    + L D               G ++SN+V M
Sbjct: 128 MACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 174

Query: 186 GMG 188
           GMG
Sbjct: 175 GMG 177


>gi|299535923|ref|ZP_07049243.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
           fusiformis ZC1]
 gi|298728675|gb|EFI69230.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
           fusiformis ZC1]
          Length = 94

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 54/89 (60%)

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           ++FEY ++ G NDS   A  L  ++KGI   +NLIP N  P  +Y+ + +  I  F + +
Sbjct: 1   MSFEYGLMSGENDSVEIAEELSALIKGIKCHVNLIPVNYVPERDYVRTSRSQIFAFEKTL 60

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSK 370
           K++G +  IR  +G DI AACGQL++  +
Sbjct: 61  KKNGINVTIRREQGSDIAAACGQLRAQER 89


>gi|149922669|ref|ZP_01911096.1| hypothetical protein PPSIR1_19869 [Plesiocystis pacifica SIR-1]
 gi|149816466|gb|EDM75965.1| hypothetical protein PPSIR1_19869 [Plesiocystis pacifica SIR-1]
          Length = 291

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/314 (23%), Positives = 122/314 (38%), Gaps = 39/314 (12%)

Query: 74  EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
            IV+E    DG R++++      +     +E V        +LCVSSQVGC++ C FC +
Sbjct: 3   RIVEEHREGDGNRRFVV-----GLDDGASVEAVLYRLD---SLCVSSQVGCAVGCPFCAS 54

Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
           G   L R L   E+  QV   R+          IE    P     +  + + G+GEPL N
Sbjct: 55  GANGLDRPLRLGELTGQVEAVRAH---------IEATDGPEAALALRRVTVSGVGEPLHN 105

Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV-------MLAISLHAV 246
            + V + +    +           +L+TSG    + R+GE +          +  S+HA 
Sbjct: 106 HEPVAQFVRWCRERD------MPASLTTSGGP--LRRLGEWLDPDAAPPHNGITFSIHAG 157

Query: 247 SNDLRNILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
               R   VP      PL  L+         S  R++   Y++L  +ND   +    ++ 
Sbjct: 158 REATRARTVPRGPALGPLFSLLGEAIPRLSRSRKRKLALAYLLLADLNDGDEEIDAFLER 217

Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP---RGLDILAAC 362
              +  KI+L  +NP P                E ++  G    +R     R  D    C
Sbjct: 218 AAPLGVKIHLYRYNPVPTSTQAPVSDARYQAIFERVRAVGLD--VRRSSQARIED-NGGC 274

Query: 363 GQLKSLSKRIPKVP 376
           G L +L +   ++ 
Sbjct: 275 GTLIALRRPERRLR 288


>gi|168027205|ref|XP_001766121.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682764|gb|EDQ69180.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 180

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 88/203 (43%), Gaps = 31/203 (15%)

Query: 70  IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129
           +    I     S DGT + LL      +   V I   Y    SR T C    VGC+L C+
Sbjct: 1   VGRSPIHHFITSKDGTVQVLLSLEDDRLVEAVGIPVTYRKGGSRLTDC----VGCALNCT 56

Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           FC TG     RNL + EI+ +  + + LL                  + ++N+V MGMGE
Sbjct: 57  FCCTGKDGFARNLKSHEIVDRACILQDLLR-----------------KPMTNMVFMGMGE 99

Query: 190 PLCNFDNVKKSLSIASDSMGLSF-------SKRRITLSTSGFVPNIARVG-EEIGVMLAI 241
           PL N   V       S +  L         +++ + + T G +  I R+   +   ML +
Sbjct: 100 PLINLGAVLD--DHLSKTDVLYIIIQESKTAQQMMVILTVGILNTIRRLAPHKFHSMLVV 157

Query: 242 SLHAVSNDLRNILVPINRKYPLE 264
           SLHA +  LR+ LVP   +Y L+
Sbjct: 158 SLHAPNQGLRSKLVPSANRYSLD 180


>gi|325849044|ref|ZP_08170536.1| ribosomal RNA large subunit methyltransferase N family protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480289|gb|EGC83352.1| ribosomal RNA large subunit methyltransferase N family protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 126

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 74/132 (56%), Gaps = 10/132 (7%)

Query: 6   KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
           K+++     EELE+  L +G      + R  Q+++ I+V  I DF  M+D+S+++R  L+
Sbjct: 2   KQTINDKTIEELEKIFLDLGF----KKFRAKQVFRQIHVNKINDFSKMTDLSKKMREDLD 57

Query: 66  QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
           ++F     ++V E  S  D T+K+L     + I     IE V++   +R T+C+SSQVGC
Sbjct: 58  KYFYFPKIKVVKEFKSNLDKTKKYLFELDDKNI-----IEAVFMEYNNRNTICISSQVGC 112

Query: 125 SLTCSFCYTGTQ 136
            + C FC +  +
Sbjct: 113 RMGCKFCASTKK 124


>gi|325918563|ref|ZP_08180675.1| hypothetical protein XVE_4704 [Xanthomonas vesicatoria ATCC 35937]
 gi|325535220|gb|EGD07104.1| hypothetical protein XVE_4704 [Xanthomonas vesicatoria ATCC 35937]
          Length = 126

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 10/110 (9%)

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--------AKINLIPFNPWPGCEYLC 328
                +TFEY ++KGIND P  A  L ++++            K+NLIPFNP+PG  Y  
Sbjct: 2   KKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYER 61

Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQ 378
           S + +I  F + +  +   + +R  RG DI AACGQLK     + +  RQ
Sbjct: 62  SGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV--MDRTRRQ 109


>gi|167951358|ref|ZP_02538432.1| radical SAM enzyme, Cfr family protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 133

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 63/120 (52%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +SLHA +N+LR+ LVPIN+KYPLE LI ACR +      R+IT+EYVML GINDS + A 
Sbjct: 1   MSLHAPTNELRDQLVPINQKYPLEELIPACRDFIKGDKRRKITWEYVMLDGINDSIQHAK 60

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR-TPRGLDIL 359
            LI++L+G P+K+NLIPFNP+PG  Y  S +      S     SG SSP+   P G DI 
Sbjct: 61  ALIRLLEGTPSKLNLIPFNPFPGTSYKTSPRGAGRGISPAPDESGASSPLPARPAGEDID 120


>gi|255030761|ref|ZP_05302712.1| hypothetical protein LmonL_19616 [Listeria monocytogenes LO28]
          Length = 137

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 17/144 (11%)

Query: 45  RGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIE 104
           + ++ F+ MS++ +E   LL  +F +   E    + S DGT K+L +     +     IE
Sbjct: 1   KRVKTFEEMSNVPKETIELLTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IE 55

Query: 105 TVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164
           TV + ++   ++CV++QVGC++ C+FC +G  K  R+LTA EI+ Q++  +         
Sbjct: 56  TVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------- 108

Query: 165 EDIEGMVIPSVGRKISNIVMMGMG 188
                +   ++  ++S++V  G+ 
Sbjct: 109 -----LDGRNLEERVSHVVGNGLA 127


>gi|217074618|gb|ACJ85669.1| unknown [Medicago truncatula]
          Length = 221

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 53/234 (22%)

Query: 16  ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQ--------GMSDISQEVRHLLNQH 67
           EL     K GI  + + +    IWK I+     D           +  +       L  +
Sbjct: 11  ELRTEFSKTGIDPKFIPI----IWKHIFRNSNSDSDYCNWEWEKHVPSLPCSAYSFLRSN 66

Query: 68  F-SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG----------- 114
           F + +   +     S D  T K +++           +E V +   +R            
Sbjct: 67  FKTPLSSSLDSIFHSSDNVTSKLVIKLQ-----NGEFVEAVIMRYDTRLGKYGGEPRPGG 121

Query: 115 ---TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
              TLC+SSQVGC + C FC TG+     NL++ EI+ Q++ A                 
Sbjct: 122 LRATLCISSQVGCKMGCKFCATGSMGFKSNLSSGEIVEQLVHA----------------- 164

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS-DSMGLSFSKRRITLSTSGF 224
             S    I N+V MGMGEPL N+  V +S+ I S     LS  + R+      F
Sbjct: 165 --SAFAHIRNVVFMGMGEPLNNYSAVVESVRIMSGSPFQLSLKRYRLNCWHHSF 216


>gi|154492443|ref|ZP_02032069.1| hypothetical protein PARMER_02077 [Parabacteroides merdae ATCC
           43184]
 gi|154087668|gb|EDN86713.1| hypothetical protein PARMER_02077 [Parabacteroides merdae ATCC
           43184]
          Length = 260

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/215 (28%), Positives = 85/215 (39%), Gaps = 35/215 (16%)

Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
            R  + VS+  GC + C FC TG  K  RNLTA+EI+ QV  A    G  P   +     
Sbjct: 57  ERWMIGVSTMSGCPVRCKFCATGNMKRYRNLTADEIVGQVEFAIEQAGFDPCDANE---- 112

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
                     I    MGEP  N + VK+++   S+          I  +T  +V  I   
Sbjct: 113 --------FKINYTRMGEPFLNIEAVKEAIGRISE----------IYPNTHHYVSTIGIK 154

Query: 232 GEEI-----GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
           G +       V L ISLH+   + RN L+P  +K  +E  +   R    L     +T   
Sbjct: 155 GSDFSFVKGNVTLQISLHSFDEEKRNWLIPYPKKMSIEE-LGRIRTESNLKTTINLTL-- 211

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321
                +N+S  D   L K        + L P NP 
Sbjct: 212 -----VNESDFDTEKLEKYFDKEYFFVKLSPINPN 241


>gi|81999761|sp|Q5UP06|YR756_MIMIV RecName: Full=Uncharacterized protein R756
 gi|55417366|gb|AAV51016.1| putative Fe-S-cluster redox enzyme [Acanthamoeba polyphaga
           mimivirus]
          Length = 298

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 117/287 (40%), Gaps = 42/287 (14%)

Query: 104 ETVYIPEKSRGTLC-VSSQVGCSLTCSFCY--TGTQKLVRNLTAEEILLQVLLARSLLGD 160
           E  Y+    +     +SS  GC + C FC+     Q   R+++ EE   Q+    S   +
Sbjct: 22  ECRYVRRNDKYISAYLSSHNGCKMACKFCWLTATNQTNFRHVSIEEYANQLDTVLSHGKE 81

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN------FDNVKKSLSIASDSMGLSFSK 214
             G       V         NI +M  GE L N      +D   K L    +     +S+
Sbjct: 82  IDGENSRIVRV---------NINLMSRGEALANKNLVNNYDKFHKELQYIINK--YDYSE 130

Query: 215 RRITLSTSGFVPNI---ARVGE---EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
            ++ +ST   +P +    ++ +   +  V +  SL++ +   R   +P + +Y +   + 
Sbjct: 131 MKMNVST--IMPKVVEHKKLIDIFGDRPVNIYYSLYSTNESFRKKWIPNSMRYEIA--LR 186

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---KINLIPFNPWPG-C 324
             R +   ++   I F + +++  ND+  D  ++ +I++ +     K NL+ FNP P   
Sbjct: 187 KLREFQKETD-NTIAFHFAVIEDENDNLSDVQSMAEIIRSMNFSKTKFNLVRFNPHPSMS 245

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPR-------GLDILAACGQ 364
            Y     + +    E ++       I+T R       G D+LA+CG 
Sbjct: 246 NYKEPSVEKLEKIYEILQSVCNDETIKTNRSRIVPRIGQDVLASCGM 292


>gi|311978166|ref|YP_003987286.1| putative radical SAM enzyme [Acanthamoeba polyphaga mimivirus]
 gi|308205034|gb|ADO18835.1| putative radical SAM enzyme [Acanthamoeba polyphaga mimivirus]
          Length = 298

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 115/287 (40%), Gaps = 42/287 (14%)

Query: 104 ETVYIPEKSRGTLC-VSSQVGCSLTCSFCY--TGTQKLVRNLTAEEILLQVLLARSLLGD 160
           E  Y+    +     +SS  GC + C FC+     Q   R+++ EE   Q+    S   +
Sbjct: 22  ECRYVRRNDKYISAYLSSHNGCKMACKFCWLTATNQTNFRHVSIEEYANQLDTVLSHGKE 81

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN------FDNVKKSLSIASDSMGLSFSK 214
             G       V         NI +M  GE L N      +D   K L    +     +S+
Sbjct: 82  IDGENSRIVRV---------NINLMSRGEALANKNLVNNYDKFHKELQYIINK--YDYSE 130

Query: 215 RRITLSTSGFVPNIARVGEEI------GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
            ++ +ST   +P +    + I       V +  SL++ +   R   +P + +Y +   + 
Sbjct: 131 MKMNVST--IMPKVIEHKKLIDIFGDRPVNIYYSLYSTNESFRKKWIPNSMRYEIA--LR 186

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---KINLIPFNPWPG-C 324
             R +   ++   I F + +++  ND+  D  ++ +I++ +     K NL+ FNP P   
Sbjct: 187 KLREFQKETD-NTIAFHFAVIEDENDNLSDVQSMAEIIRSMNFSKTKFNLVRFNPHPSMS 245

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPR-------GLDILAACGQ 364
            Y     + +    E ++       I+T R       G D+LA+CG 
Sbjct: 246 NYKEPSVEKLEKIYEILQSVCNDETIKTNRSRIVPRIGQDVLASCGM 292


>gi|320158412|ref|YP_004190790.1| radical SAM domain-containing protein [Vibrio vulnificus MO6-24/O]
 gi|319933724|gb|ADV88587.1| radical SAM domain protein [Vibrio vulnificus MO6-24/O]
          Length = 274

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 29/224 (12%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCY----TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165
              +  + +S+Q GC + C FC     T  Q   RNLTA+E++ QV  A    G  P   
Sbjct: 58  WSQKYMVGISTQSGCPIKCKFCAVNKLTARQGW-RNLTADEMVAQVEWAIEQAGHDP--- 113

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
                       ++  I+   MGEP  N  NV +++            K RI +ST GF 
Sbjct: 114 ---------EDAQLFRILFTRMGEPAMNVKNVVEAVRRLKARY----PKVRIQVSTIGFG 160

Query: 226 PNIARVGEEI----GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
            +  R+   +     + L  S+H+ SN+ R  L   +     E + +  R +  +    +
Sbjct: 161 KHSQRLVNALYEFDNIELQFSIHSTSNEYRQWLQHKDVSSN-EDISELIREWHSVPREWK 219

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           +T  + +      +P D   L +        I + P N     +
Sbjct: 220 VTLNFALTTE---TPFDVKELRRQFNPDEVFIKVSPINENSESD 260


>gi|301119925|ref|XP_002907690.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262106202|gb|EEY64254.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 170

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 14/110 (12%)

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKR-SG 345
           ML G+NDS   A  L K+L+     +NLIP+N    G ++     +DI  F   ++    
Sbjct: 1   MLAGVNDSIETAHTLGKLLQNRSVHVNLIPYNTTDVGAQFQSPSAEDIRAFHAVLREPYN 60

Query: 346 YSSPIRTPRGLDILAACGQLKSLSK------------RIPKVPRQEMQIT 383
             + IR   G DI  ACGQL   +K            R  K PR+  + +
Sbjct: 61  LKATIRENHGTDIDGACGQLALKNKPDGSRDIEDLGPRRTKAPRKTKKSS 110


>gi|325116881|emb|CBZ52434.1| hypothetical protein NCLIV_022230 [Neospora caninum Liverpool]
          Length = 157

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 20/124 (16%)

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
            G    +R L+A+EI  QVL                       G KI ++ +MGMGEPL 
Sbjct: 50  VGKSGFLRQLSADEITDQVLFFLRQ------------------GIKIDSVSLMGMGEPLA 91

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLR 251
           N   V  +L I +D +  +FS R++ +ST G +P I ++ EE   V LA SLH+   + R
Sbjct: 92  NPK-VFDALRILTDPLLFNFSARKLAVSTLGVLPGIKKLTEEHPQVNLAFSLHSPFPEER 150

Query: 252 NILV 255
           N+LV
Sbjct: 151 NLLV 154


>gi|218681469|ref|ZP_03529356.1| hypothetical protein RetlC8_22681 [Rhizobium etli CIAT 894]
          Length = 94

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 56/73 (76%)

Query: 5  KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
          +K SLIG+ REE+  AL + G+ ++ ++MR +Q+W WIYVRG+ DF  M+++++++R +L
Sbjct: 22 EKPSLIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 81

Query: 65 NQHFSIIYPEIVD 77
           QHF+I  PEIV+
Sbjct: 82 KQHFTIARPEIVE 94


>gi|227885422|ref|ZP_04003227.1| conserved hypothetical protein [Escherichia coli 83972]
 gi|227837605|gb|EEJ48071.1| conserved hypothetical protein [Escherichia coli 83972]
          Length = 80

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/85 (50%), Positives = 53/85 (62%), Gaps = 5/85 (5%)

Query: 65  NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
                I  PEIV + IS DGTRKW++R     +     +ETVYIP+  RGTLCVSSQ GC
Sbjct: 1   KASAEIRGPEIVSQDISADGTRKWVVR-----VASGSCVETVYIPQGGRGTLCVSSQAGC 55

Query: 125 SLTCSFCYTGTQKLVRNLTAEEILL 149
           +L CSFC TG Q    +LTA E++ 
Sbjct: 56  ALDCSFCSTGKQGFNSDLTAAEVIG 80


>gi|313634809|gb|EFS01238.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL N1-067]
 gi|313639434|gb|EFS04296.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL S4-171]
          Length = 78

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 4  LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
          ++K S+ G+   +L E L   G      + R +Q+W W+Y + ++ F+ MS++ +E   L
Sbjct: 1  MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56

Query: 64 LNQHFSIIYPEIVDEKISCDGT 85
          L  +F +   E    + S DGT
Sbjct: 57 LTANFVMSTLEEQVVQESTDGT 78


>gi|240147168|ref|ZP_04745769.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
 gi|257200635|gb|EEU98919.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82]
          Length = 67

 Score = 96.5 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368
           +   +NLIP NP     Y+  D + I+ F   ++++  +  IR   G DI  ACGQL+  
Sbjct: 1   MNCHVNLIPVNPIKERSYVQPDHEAILNFKNRLEKNAINVTIRREMGRDIDGACGQLRKR 60


>gi|189490583|ref|YP_001957153.1| Fe-S-cluster redox domain-containing protein [Pseudomonas phage
           201phi2-1]
 gi|164609648|gb|ABY63257.1| hypothetical protein 201phi2-1p434 [Pseudomonas phage 201phi2-1]
          Length = 302

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 95/278 (34%), Gaps = 42/278 (15%)

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLV--RNLTAEEILLQVLLARSLLGDFPGCEDIE 168
                + +SSQ GC   C  C+         R++T +E   Q         D      + 
Sbjct: 40  DDYFIVYLSSQTGCKQACRMCWLTATGQTDSRDVTVQEYFEQAERVFDHYIDMVRNNHVG 99

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCN------FDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                       +   M  GEPL N       D + + L   ++  GL   + +  +ST 
Sbjct: 100 SAATK------VHFNFMARGEPLANKHFVENADEILRGLKRMAEQWGL---EAKFLISTI 150

Query: 223 -----GFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
                GF        + E+   L  SL++++   R   +P       E  +D  + +   
Sbjct: 151 WPKEFGFTKLTDVFTDPEVYPELYYSLYSLNPKFRKQWLPKAAA--PETALDELKCWQEA 208

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI--NLIPFNPWPGCEYLCSDQKDI 334
           +        Y  +   NDS  D   +I  +K +  K+  N++ +NP P   Y    ++ +
Sbjct: 209 TGKTPK-IHYAFINDQNDSIGDVKAIIDEIKEVGLKVNWNIVRYNP-PEGHY---SKEPV 263

Query: 335 VTFSECIK--------RSGYSSPIRTPRGLDILAACGQ 364
               + +          +      R   G D+ A+CG 
Sbjct: 264 EGHVKYLHGFIQRHLPDAKVKLIPRV--GTDVKASCGT 299


>gi|302854259|ref|XP_002958639.1| hypothetical protein VOLCADRAFT_99921 [Volvox carteri f.
           nagariensis]
 gi|300256028|gb|EFJ40305.1| hypothetical protein VOLCADRAFT_99921 [Volvox carteri f.
           nagariensis]
          Length = 438

 Score = 89.2 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 62/170 (36%), Gaps = 45/170 (26%)

Query: 59  EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE-------- 110
           + R LL+         + D   + DGTRK + R       G   IETV IP         
Sbjct: 176 KFRALLSLQ---GGLMLEDVTPASDGTRKLVFRVTEGEAAGG-RIETVLIPWFRDYDPRV 231

Query: 111 ----KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
                 R TLCVSS                             QVL+A+ LL   P    
Sbjct: 232 GRREHPRYTLCVSS-----------------------------QVLVAQRLLDQDPARPP 262

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
                  +    I+NIV MGMGEPL N   V  ++ I +   GL FS  R
Sbjct: 263 AATAATAATAAPITNIVFMGMGEPLHNCTAVFAAIDILTHRRGLGFSASR 312



 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376
            FNP+PG  Y+ S  + +  F   ++  G    +R  +G   +AACGQL  +      VP
Sbjct: 350 RFNPFPGTLYVPSAPERVDEFRRVLREGGRIVHVRQSKGDSGMAACGQLGDVGGTKEGVP 409

Query: 377 R 377
            
Sbjct: 410 H 410



 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 4/34 (11%)

Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY 43
           G+   EL++     G        R  Q+W+W+Y
Sbjct: 46 KGVTLPELQQWFAAQGERPS----RADQLWRWVY 75


>gi|218662568|ref|ZP_03518498.1| hypothetical protein RetlI_25657 [Rhizobium etli IE4771]
          Length = 72

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/61 (57%), Positives = 43/61 (70%)

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEM 380
           WPG  Y CSD + I  F++ I  +GY+SPIRTPRG DILAACGQLKS S+R+ K  R   
Sbjct: 1   WPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTERLAF 60

Query: 381 Q 381
           +
Sbjct: 61  E 61


>gi|226498404|ref|NP_001141738.1| hypothetical protein LOC100273870 [Zea mays]
 gi|194705752|gb|ACF86960.1| unknown [Zea mays]
          Length = 105

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 7/110 (6%)

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MG+P  N DNV K+ +I     G  FS R++T+STSGFVP +        ++ A SL+A 
Sbjct: 1   MGQPFHNIDNVIKASAIMVHEQG-HFSPRKVTVSTSGFVPQLG-----TQLLAAASLNAR 54

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVMLKGINDS 295
           ++++RN ++ INRK  L +L+   R    L   ++I   EY ML G+N S
Sbjct: 55  TDEVRNWIMTINRKENLNLLLGTLRGELNLRKKKQIVLSEYAMLSGVNGS 104


>gi|325114723|emb|CBZ50279.1| uvrd-like DNA helicase, C terminal, related [Neospora caninum
           Liverpool]
          Length = 139

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 9/130 (6%)

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK------GIPAKIN 314
           +P+E ++D        +   RI   Y+++KG ND+   A  L  +L+           +N
Sbjct: 2   FPMEEVLDLLDERLAKTGR-RIWISYILIKGRNDTDDHARALAALLRARRLPTRHLYHVN 60

Query: 315 LIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372
           +IP+N   G E         ++  F++ +++   S   R   G  I AACGQ+ +  +  
Sbjct: 61  VIPYNKAQGVEPSMQSPSAAEVNHFTDLLRKLNLSVSRRHTIGSAIDAACGQMHAEYEVG 120

Query: 373 PKVPRQEMQI 382
               +++ + 
Sbjct: 121 QLTKQRQARE 130


>gi|154249178|ref|YP_001410003.1| radical SAM domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153114|gb|ABS60346.1| Radical SAM domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 329

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 95/267 (35%), Gaps = 40/267 (14%)

Query: 103 IETVY--IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           +E+V   IP   +  L VS+  GC + C  C  G     R L+ EEIL Q+L       +
Sbjct: 46  VESVQPPIPRDKKWVLIVSTMDGCPVGCKMCDAG-GYYKRRLSKEEILAQILYLIRSRYE 104

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
                +               I    +GEP  N D V K L        +       ++S
Sbjct: 105 DEVPVEK------------FKIQFARVGEPALN-DEVLKVLDEL--PQIIDAPGLMPSIS 149

Query: 221 TSGFVPN---IARVGE------EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
           T   +       R+ E           L  S+H+     R+ ++P+ +K+    + +   
Sbjct: 150 TVAPIGRNGWFERLIEIKEKHYRGKFQLQFSIHSTDEKQRDEIIPV-KKWSFREISEYGE 208

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-----GCEY 326
            +   +  R+IT  + + K    +  DA  ++         I + P NP       G   
Sbjct: 209 KFVT-TEDRKITLNFALAKE---NIADARVIMNFFNPEKFLIKITPVNPTYRSIENGLNS 264

Query: 327 LCSDQKDI---VTFSECIKRSGYSSPI 350
             + +  +     F + ++ SGY   I
Sbjct: 265 DVTGEGLVLEHREFVDKLRESGYDVII 291


>gi|226323829|ref|ZP_03799347.1| hypothetical protein COPCOM_01604 [Coprococcus comes ATCC 27758]
 gi|225208013|gb|EEG90367.1| hypothetical protein COPCOM_01604 [Coprococcus comes ATCC 27758]
          Length = 85

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 4  LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
          ++K+ +     EEL+E +L IG        R+ QI+ WI+ + + DF+ M+++ + +R  
Sbjct: 1  MEKKDIASYSFEELQEEMLAIG----EKGFRSRQIYSWIHEKLVDDFEEMTNLPKTLRQK 56

Query: 64 LNQHFSIIYPEIVDEK 79
          L   + I   E+   +
Sbjct: 57 LESAYEIRRVEMEKYR 72


>gi|326333648|ref|ZP_08199885.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1]
 gi|325948554|gb|EGD40657.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1]
          Length = 57

 Score = 83.4 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369
           L P NP PG ++  SD  D   F   ++  G S+ +R  RG +I  ACGQL +  
Sbjct: 3   LCPLNPTPGSKWTASDPADEREFVRRLEAKGISTTVRDTRGREIDGACGQLAAAE 57


>gi|222099528|ref|YP_002534096.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
 gi|221571918|gb|ACM22730.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
          Length = 311

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 101/301 (33%), Gaps = 57/301 (18%)

Query: 95  RCIGGPVEIETVY-----IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR-NLTAEEIL 148
                   +E V      +P + +  L VS+ VGC + C  C  G     R  L++EEIL
Sbjct: 18  GETSKGNLVEFVESIQPPVPREKKWVLIVSTLVGCPVGCFMCDAG--GFYRGKLSSEEIL 75

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q+        DF          +P    KI       MGEP  N D V   L       
Sbjct: 76  EQI--------DFLVESRYPDRKVPVEKFKIQ---FARMGEPALN-DAVLDVLEDLPKRY 123

Query: 209 -GLSFSKRRITLSTSGFVPNIARVGE------EIGVMLAISLHAVSNDLRNILVPINRKY 261
                     T++  G       + +           L  S+H+ +   R+ ++P+ +K+
Sbjct: 124 NAFGLLPSISTVAPHGTDSFFEELLKIKEKHYRGRFQLQFSIHSTNERERDRIMPV-KKW 182

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321
            L  + +  + +    +  +IT  +   +  +  P     ++ +       + + P NP 
Sbjct: 183 SLREISEYGKTFVKQGDR-KITLNFAAAQNYSLDP---DVIVDLFDPKKFLVKITPVNPT 238

Query: 322 PGCEYLCSDQKDI--------------VTFSECIKRSGYSSPIRTPRGL----DILAACG 363
                  S + D+                F   ++ +G+   +    G      I + CG
Sbjct: 239 Y-----RSRENDLKSDVDVEKGVLIKHQKFVSKLREAGFEVIL--SIGELEENKIGSNCG 291

Query: 364 Q 364
           Q
Sbjct: 292 Q 292


>gi|218673229|ref|ZP_03522898.1| hypothetical protein RetlG_17291 [Rhizobium etli GR56]
          Length = 75

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375
           IP    P   Y CS  + I  F++ I  +GY+SPIRTPRG DILAACGQLKS S+R+ K 
Sbjct: 2   IP---GPAPNYQCSGWEQIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKT 58

Query: 376 PRQEMQ 381
            R   +
Sbjct: 59  ERLAFE 64


>gi|15642910|ref|NP_227951.1| hypothetical protein TM0136 [Thermotoga maritima MSB8]
 gi|4980628|gb|AAD35229.1|AE001699_6 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 329

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 105/277 (37%), Gaps = 42/277 (15%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR-NLTAEEILLQVLLARSLLGDFPGCEDI 167
           P + +  L VS+  GC + C  C  G     R  L+A+EI  Q+        DF      
Sbjct: 55  PREKKWVLIVSTLAGCPVGCLMCDAG--GFYRGKLSADEIFEQI--------DFLVKSRY 104

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRI-TLSTSG 223
               IPS   KI       MGEP  N + V   L          GL  S   +    T  
Sbjct: 105 PNGRIPSEKFKIQ---FARMGEPALN-EAVLDVLKELPARYEAPGLMPSISTVAPCGTDS 160

Query: 224 FVPNIARVGEEI---GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
           F  ++ ++ E+       L  S+H+     R+ ++P+ +K+ LE + +  + +    N R
Sbjct: 161 FFEDLLKIKEKHYRGKFQLQFSIHSTDEKERDQIIPV-KKWSLEKISEFGKRFV-KENDR 218

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP---------GCEYLCSDQ 331
           +IT  + + +  +  P     +I++       + + P NP             +    + 
Sbjct: 219 KITLNFAVAQEYSLDP---KVIIRVFDPEKFLVKITPVNPTYRSKENNLNSDVDVERKEL 275

Query: 332 KDIVTFSECIKRSGYSSPIRTPRGL----DILAACGQ 364
                F E +K++G+   +    G      I + CGQ
Sbjct: 276 LKHRNFIEELKKAGFEVIL--SIGELEENKIGSNCGQ 310


>gi|168699972|ref|ZP_02732249.1| hypothetical protein GobsU_10628 [Gemmata obscuriglobus UQM 2246]
          Length = 313

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 99/260 (38%), Gaps = 27/260 (10%)

Query: 118 VSSQVGCSLTCSFCYTGTQK--LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           +SSQ GC+  C  C+        +R+ T  E L Q     +               + + 
Sbjct: 49  LSSQTGCAQACRMCHLTATGQTHLRDTTFNEFLEQAETVLAHYRREGKPARAVHFNLMAR 108

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
           G  +++ V+   G      D +   LS    ++G     R + +ST        R  E++
Sbjct: 109 GEPLASKVIATRG------DELLGELSRL--AVGSGLRPRHL-ISTIYPKAFGDRALEDV 159

Query: 236 ----GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
                  +  S+++VS   R   +P  + +P E+ +D    +   S    +   +  + G
Sbjct: 160 FVVHQPEIHYSIYSVSERFRRRWLP--KAHPAEVALDRLAAWQRHSLKL-VVLHHAYIAG 216

Query: 292 INDSPRDALNLIKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVT-----FSECIKRS 344
            ND+  D   +   L  + + A IN++ +NP+    +     + +V      + E +  +
Sbjct: 217 ENDTEGDVHAICDALEERKLMAHINVVRYNPFDPARHGTEPPEAVVERNAAIYRERLPGA 276

Query: 345 GYSSPIRTPRGLDILAACGQ 364
                 R   G D+ A+CG 
Sbjct: 277 RVVVIARV--GFDVAASCGM 294


>gi|330983424|gb|EGH81527.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 293

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 101/268 (37%), Gaps = 45/268 (16%)

Query: 118 VSSQVGCSLTCSFCYTGTQKLVR--NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           +SSQ GC  +C FC+  T   V+  N T E+ L Q  L  +        +          
Sbjct: 44  LSSQSGCDQSCRFCHLTTTGQVKLDNATLEDFLEQAKLVLAYYDTQAPAD---------- 93

Query: 176 GRKISNIVMMGMGEPLCN----FDN--VKKSLSIASDSMGLSFSKRRITLSTSGFVPN-- 227
              + +   M  GEPL N     D+  +  +L   +D  GL           S   P   
Sbjct: 94  ---LVHYNFMARGEPLNNPLIRHDSATLLNTLKGLADQRGL-----ETKFLISSIFPKAL 145

Query: 228 ----IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
               + ++  E+   +  S++++  + R   +   + +  E  ++  + +   S      
Sbjct: 146 GDLTLPQMFPEVHPEIYYSIYSMKPEFRRRWL--AKAHSAEKGLEMLKEWQEFSGKTPK- 202

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKI--NLIPFNPWPGCEYLCSDQKDIVTFSECI 341
             +  ++G NDS  D   +   +  +  ++  N++ +NP+         +  +   +E +
Sbjct: 203 IHFAFIEGQNDSEEDMHLIATAINALDLRVSLNIVRYNPYDHRYGKEPAEAVVNRNAELL 262

Query: 342 KRSGYSSPIRTPR-----GLDILAACGQ 364
                ++P    R     G+D+ A+CG 
Sbjct: 263 SSL-INAP--ATRVVPKVGMDVKASCGM 287


>gi|251791822|ref|YP_003006542.1| protein YfgB [Aggregatibacter aphrophilus NJ8700]
 gi|247533209|gb|ACS96455.1| protein YfgB [Aggregatibacter aphrophilus NJ8700]
          Length = 77

 Score = 81.1 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 5  KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
          KK +L+ + R ++ E   ++G        R  Q+ KWIY  G  +F  M+++++++R  L
Sbjct: 16 KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKKLREKL 71

Query: 65 N 65
           
Sbjct: 72 K 72


>gi|158320747|ref|YP_001513254.1| radical SAM domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158140946|gb|ABW19258.1| Radical SAM domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 455

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 108/308 (35%), Gaps = 43/308 (13%)

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            LL   +S    +   +++    T   L            +       +     LC+   
Sbjct: 46  ELLKAKYSAEEIKEAVKELDLIKTEGLLFSDDRYFNHDGFK-----NKKPVVKALCLHIA 100

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
             C++ C +C+                      RSL+ +  G + I+ ++  S GR+   
Sbjct: 101 HDCNIRCKYCFASQGDFKG-------------VRSLMSEEVGKKAIDFLLENSGGRRNLE 147

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-------RITLSTSGFVPNIARVG-- 232
           +   G GEPL NF+ VKK +           SK        R T++T+G + N   +   
Sbjct: 148 VDFFG-GEPLMNFETVKKIVD-------YGRSKEKEFNKNIRFTMTTNGVLLNDENMAYI 199

Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
                 V+L+I      ND  N+   IN +   ++++        L   R         K
Sbjct: 200 NENMHNVVLSIDGRREVND--NMRYAINGQGTYDIIVPKFLKMAELRGHRNYYVRGTFTK 257

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIK-RSGYSSP 349
              D  +D L+L  +  G  +  ++ P    P  +Y  S++     F +  +    Y   
Sbjct: 258 ENLDFAKDVLHLADL--GFKS-TSMEPVVAEPHHDYAISEEDLQTVFDQYEELSKEYVKR 314

Query: 350 IRTPRGLD 357
           I+  +G D
Sbjct: 315 IKEGKGFD 322


>gi|297847344|ref|XP_002891553.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337395|gb|EFH67812.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 97

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 36/66 (54%)

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377
           +NP  G E     +K ++ F+  ++    ++ +R  RGLD  AACGQL++  ++ P +  
Sbjct: 11  YNPIEGSEQKRPYKKAVLAFAAALESRKITASVRQTRGLDASAACGQLRNKFQKSPLLAE 70

Query: 378 QEMQIT 383
            + Q +
Sbjct: 71  TDGQES 76


>gi|294954127|ref|XP_002788018.1| hypothetical protein Pmar_PMAR024230 [Perkinsus marinus ATCC 50983]
 gi|239903222|gb|EER19814.1| hypothetical protein Pmar_PMAR024230 [Perkinsus marinus ATCC 50983]
          Length = 92

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 298 DALNLIKILKGIP------AKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349
            A  L +++K  P        INL+P+N        +     +D   F   +   G ++ 
Sbjct: 4   HARALAQLIKDRPKQTSYLYHINLLPYNEARDVSTAFKRC--EDWNQFQSILTNEGITTS 61

Query: 350 IRTPRGLDILAACGQLKSLSKRIPKVPRQ 378
            R   G  I AACGQL +  +    + R+
Sbjct: 62  FRNSFGRSIDAACGQLYATYEAKNALKRK 90


>gi|150019940|ref|YP_001305294.1| radical SAM domain-containing protein [Thermosipho melanesiensis
           BI429]
 gi|149792461|gb|ABR29909.1| Radical SAM domain protein [Thermosipho melanesiensis BI429]
          Length = 312

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 93/278 (33%), Gaps = 42/278 (15%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL-VRNLTAEEILLQVLLARSLLGDFPGCED 166
           IP + +  L VS+  GC + C  C  G        L ++EI+ Q+L              
Sbjct: 36  IPREKKWVLIVSTLNGCPVGCLMCDAG--GFYKGKLQSDEIMEQILFL-----------V 82

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFV 225
               +   V  +   I    MGEP  N + V   L                 T++  G  
Sbjct: 83  ESRFINKRVPVEKFKIQFARMGEPALN-EAVLDVLERLPKEIDAPGLMPSVSTVAPIGTD 141

Query: 226 PNIARVGEEIG------VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
               R+ E           L  S+HA   D RN ++PI +K+  E +      +   S  
Sbjct: 142 DFFERLLEIKDKMYLGRFQLQFSIHATDKDQRNRIIPI-KKWSFEDIAKYGEKFV-KSGD 199

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP---------GCEYLCSD 330
           R++T  + + K    +  D   +IK        I + P NP             +     
Sbjct: 200 RKVTLNFALAKQ---NIADPDVIIKYFDKEKFLIKITPINPTYSAMKNNLESDIDLKTFI 256

Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGL----DILAACGQ 364
             +   F E +  +GY   I    G      I + CGQ
Sbjct: 257 PVNHQYFVEKLMEAGYDVII--SIGELEENKIGSNCGQ 292


>gi|148269924|ref|YP_001244384.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
 gi|170288609|ref|YP_001738847.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
 gi|281412195|ref|YP_003346274.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
 gi|147735468|gb|ABQ46808.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
 gi|170176112|gb|ACB09164.1| Radical SAM domain protein [Thermotoga sp. RQ2]
 gi|281373298|gb|ADA66860.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
          Length = 311

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 98/281 (34%), Gaps = 48/281 (17%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL-VRNLTAEEILLQVLLARSLLGDFPGCED 166
           IP + +  L VS+  GC + C  C  G        L+A+EI  Q+        DF     
Sbjct: 36  IPREKKWVLIVSTLAGCPVGCLMCDAG--GFYKGKLSADEIFEQI--------DFLVKSR 85

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
                IPS   KI       MGEP  N + V   L      +         ++ST     
Sbjct: 86  YPNGRIPSEKFKIQ---FARMGEPALN-EAVLDVLKEL--PVRYEAPGLMPSISTVA-PH 138

Query: 227 NIARVGEEI----------GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
                 EE+             L  S+H+     R+ ++P+ +K+ L+ + +  + +   
Sbjct: 139 GTDSFFEELLKIKEKHYRGKFQLQFSIHSTDEKERDRIIPV-KKWSLDKISEFGKRFV-K 196

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP---------GCEYL 327
            N R+IT  + + +  +  P   + +    K    KI   P NP             +  
Sbjct: 197 ENDRKITLNFAVAQEYSLDPEVIIEVFDPEK-FLVKIT--PVNPTYRSKENNLNSDVDVE 253

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGL----DILAACGQ 364
                    F E +K +G+   +    G      I + CGQ
Sbjct: 254 RKGLLKHQNFIEELKNAGFEVIL--SIGELEENKIGSNCGQ 292


>gi|266624678|ref|ZP_06117613.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
 gi|288863457|gb|EFC95755.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479]
          Length = 62

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 4  LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63
          ++K  +  +  EEL   +   G        R  Q+++W++ +    ++ M+++ + ++  
Sbjct: 1  MEKTDIKSLNLEELTAFITASG----EKAFRAKQLYEWMHKKLAPGYEEMTNLPKALKER 56

Query: 64 LNQHFS 69
          L +   
Sbjct: 57 LKETCE 62


>gi|194698458|gb|ACF83313.1| unknown [Zea mays]
 gi|194698542|gb|ACF83355.1| unknown [Zea mays]
 gi|194707874|gb|ACF88021.1| unknown [Zea mays]
 gi|195621242|gb|ACG32451.1| hypothetical protein [Zea mays]
          Length = 89

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 6/95 (6%)

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           MG+P  N DNV K+ +I     G  FS R++T+STSGFVP +        ++ A SL+A 
Sbjct: 1   MGQPFHNIDNVIKASAIMVHEQG-HFSPRKVTVSTSGFVPQLG-----TQLLAAASLNAR 54

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           ++++RN ++ INRK  L +L+   R    L    +
Sbjct: 55  TDEVRNWIMTINRKENLNLLLGTLRGELNLRKKNK 89


>gi|254167208|ref|ZP_04874061.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197624064|gb|EDY36626.1| radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 314

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 92/285 (32%), Gaps = 45/285 (15%)

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEG 169
             +  L VSS  GC + C  C  G       L  +EI+ Q+    +   G+ P  +    
Sbjct: 34  GEKWVLIVSSLNGCPVGCKMCDAGFF-YKGKLDYKEIMEQIEYPIKKRFGEKPKTKK--- 89

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229
                       I    MGEP  N   V   +    D    +F     T++  G      
Sbjct: 90  ----------FKIQFARMGEPSFN-PAVLDVIENLGDKYD-NFFPSLSTIAPVGVDSFFE 137

Query: 230 RVGE------EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
           R+ +           L  S+H  +   R+ ++PI RK+  + + D  R +       +IT
Sbjct: 138 RLLKIKKEKYPEKFQLQFSIHTTNQKQRDEIIPI-RKWDFKRISDYGRKFYD-EGGLKIT 195

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK---------DI 334
             + + K     P   +            I + P NP    +                  
Sbjct: 196 LNFALAKENEADPEIIM---DFFSPEYFLIKITPVNPTVSAKINHISNDINLRNGLPVKH 252

Query: 335 VTFSECIKRSGYSSPIRTPRGLD----ILAACGQ--LKSLSKRIP 373
             F + ++R GY   I    G      I + CG   L+ + +R  
Sbjct: 253 RKFVDTLERMGYDVII--SIGDTKENLIGSNCGMFILRFIKERAE 295


>gi|213419786|ref|ZP_03352852.1| hypothetical protein Salmonentericaenterica_19178 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 64

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQ 381
            S    I  FS+ +   G+++ +R  RG DI AACGQL      R  +  R+ MQ
Sbjct: 1   RSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 55


>gi|167763821|ref|ZP_02435948.1| hypothetical protein BACSTE_02201 [Bacteroides stercoris ATCC
           43183]
 gi|298480031|ref|ZP_06998230.1| conserved hypothetical protein [Bacteroides sp. D22]
 gi|167697937|gb|EDS14516.1| hypothetical protein BACSTE_02201 [Bacteroides stercoris ATCC
           43183]
 gi|298273840|gb|EFI15402.1| conserved hypothetical protein [Bacteroides sp. D22]
          Length = 336

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 82/241 (34%), Gaps = 39/241 (16%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           +P   +  + +S+Q GCS+ C FC      + RN T  ++  +VL A     +    + +
Sbjct: 58  MPLTEKWVITISTQYGCSMGCKFCDVPKVGIGRNATFNDLKGEVLTAIKQHPEVKHTKRL 117

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL-SFSKRRITLSTSGFVP 226
                        NI    MGEP  N + +  ++S+  D       S     +ST     
Sbjct: 118 -------------NIHYARMGEPTWNANVLLHAISVKKDIEPFIGDSLVHPVISTM-LPK 163

Query: 227 NIARVGEEIG--------------VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
              ++ E +                 L  S++  +++ RN L   +    L  + +  + 
Sbjct: 164 RNKKLVEFLHKWCYYIKNELYKGDAGLQFSINTTNDEERNYLFSGS-SLSLGEISEIGKS 222

Query: 273 YPGLSNARRITFEYVM-LKGINDSPRDALNLIKILKGIPAKINLIPF---NPWPGCEYLC 328
            P       +  +Y +     +D+  D   L ++         + P    N     +   
Sbjct: 223 LP-----MPVGRKYALNFALADDTHIDGKRLRELFNPDKFMCKITPLHRTNSCDENDLHT 277

Query: 329 S 329
           S
Sbjct: 278 S 278


>gi|254167584|ref|ZP_04874435.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289596962|ref|YP_003483658.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197623393|gb|EDY35957.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289534749|gb|ADD09096.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 318

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 99/286 (34%), Gaps = 47/286 (16%)

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEG 169
             +  L VSS  GC + C  C  G       L  +EI+ Q+    +    + P  +    
Sbjct: 38  GEKWVLIVSSLNGCPVGCKMCDAGFF-YKGKLDFKEIMEQIEYPIKKRFEEKPKTKK--- 93

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229
                       I    MGEP  N   V   +    D    +F     T++  G      
Sbjct: 94  ----------FKIQFARMGEPSFN-PAVLDVIENLGDKYD-NFFPSLSTIAPVGVDSFFE 141

Query: 230 RVGE------EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
           R+ +           L  S+H  +   R+ ++PI RK+  + + D  R +     + +IT
Sbjct: 142 RLLKIKKEKYPEKFQLQFSIHTTNTKQRDEIIPI-RKWDFKRISDYGRKFYD-EGSLKIT 199

Query: 284 FEYVMLKGINDSPRDALN-------LIKILKGIP---AKINLIPFNPWPGCEYLCSDQKD 333
             + + K     P   +N       LIKI  G P   AKIN I        +        
Sbjct: 200 LNFALAKENEADPEIIMNFFSPEYFLIKITPGNPTVSAKINHI----SNDIDLRNGLPVK 255

Query: 334 IVTFSECIKRSGYSSPIRTPRGLD----ILAACGQ--LKSLSKRIP 373
              F + +KR GY   I    G      I + CG   L+ + +R  
Sbjct: 256 HRKFVDTLKRMGYDVII--SIGDTKENLIGSNCGMFILRFIKERAE 299


>gi|150390110|ref|YP_001320159.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149949972|gb|ABR48500.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 458

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 92/242 (38%), Gaps = 31/242 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C++ C +C+        +             RS +    G + I+ ++  S
Sbjct: 93  ALCLHIAHDCNIRCKYCFASQGDFQGD-------------RSFMSLEVGKKAIDFLLENS 139

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFV---PNI 228
             RK   +   G GEPL NFD VK  +            +    R T++T+G +    N+
Sbjct: 140 GNRKNLEVDFFG-GEPLMNFDVVKGLVDYGRSREKDFDKNI---RFTMTTNGVLLNDENM 195

Query: 229 ARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             + E +  V+L+I      ND  ++   IN +   ++++   R    +   +       
Sbjct: 196 EYINENMHNVVLSIDGRKAVND--HMRYTINGQGTYDVIVPKLRKMVEMRKDKHCYVRGT 253

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL--CSDQKDIVTFSECIKRSG 345
             K   D  +D L+L  +  G    +++ P    P  +Y     D K++    E + R  
Sbjct: 254 FTKHNLDFSQDVLHLADL--GFD-NVSVEPVVASPEHDYSIGREDLKEVFENYEILSREY 310

Query: 346 YS 347
            +
Sbjct: 311 VN 312


>gi|218461239|ref|ZP_03501330.1| hypothetical protein RetlK5_17732 [Rhizobium etli Kim 5]
          Length = 73

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 37/52 (71%)

Query: 5  KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI 56
          +K SLIG+ REE+  AL + G+ +  ++MR +Q+W  IYVRG+ DF  M+++
Sbjct: 22 EKPSLIGLSREEMAAALTEKGVAENQIKMRVAQLWNCIYVRGVSDFDRMTNV 73


>gi|212694596|ref|ZP_03302724.1| hypothetical protein BACDOR_04124 [Bacteroides dorei DSM 17855]
 gi|212663097|gb|EEB23671.1| hypothetical protein BACDOR_04124 [Bacteroides dorei DSM 17855]
          Length = 56

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374
           +    D + +V F + + + G  + IR  RG DI AACG L +  ++  K
Sbjct: 2   DLEGVDMETMVAFRDYLTQHGVFATIRASRGEDIFAACGMLSTAKQQKEK 51


>gi|310829213|ref|YP_003961570.1| radical SAM domain-containing protein [Eubacterium limosum KIST612]
 gi|308740947|gb|ADO38607.1| radical SAM domain-containing protein [Eubacterium limosum KIST612]
          Length = 449

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 97/259 (37%), Gaps = 29/259 (11%)

Query: 106 VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165
           VY        LC+     C+L C++C+             E L        L+    G +
Sbjct: 82  VYKNHDLVKALCLHVAHDCNLKCNYCFASQGDFN-----GEKL--------LMPLEVGKK 128

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
            I+ ++  S  R+   +   G GEPL NFD VK+ +  A         K + T++T+G +
Sbjct: 129 AIDFIIEQSKDRQNLEVDFFG-GEPLMNFDVVKELVDYARSKEESYHKKFKFTITTNGVL 187

Query: 226 PNIARVG----EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
            +   +         V+L++      ND  N+   +N K   +++ID  +    +   ++
Sbjct: 188 LDDENMAYIDENMDNVVLSLDGRKCVND--NMRRTVNDKGSFDIIIDKIKKMAAMREGKK 245

Query: 282 -ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL--CSDQKDIVTFS 338
                    K   D   D   L +  +G  + I++ P       +Y     D   I+   
Sbjct: 246 DYYVRGTYTKHNLDFGEDVNFLAE--EGFKS-ISVEPVVAEEEHDYAILREDVDQILAEY 302

Query: 339 ECIKRSGYSSPIRTPRGLD 357
           + +     +   R  +GLD
Sbjct: 303 DKLALDYLN---RHEKGLD 318


>gi|297517024|ref|ZP_06935410.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
           OP50]
          Length = 60

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
            I  FS+ +   G+++ +R  RG DI AACGQL      R  +  R+ MQ   
Sbjct: 2   RIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEA 54


>gi|307352680|ref|YP_003893731.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307155913|gb|ADN35293.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 318

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 83/274 (30%), Gaps = 49/274 (17%)

Query: 91  RFPARCIGGPVEIE---TVYIPE--KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145
           R     I     IE   +V  P     +  L VSS  GC + C  C  G       L+AE
Sbjct: 14  RVYIAEIDDGRRIEFVESVQPPFTRSQKWVLIVSSLFGCPVGCRMCDAG-GGYRGKLSAE 72

Query: 146 EILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
           +I  Q+  L R          D               I    MGEP  N   V   L   
Sbjct: 73  DIYAQIDYLVRKRFPGGYVDADK------------FKIQFARMGEPAFN-PAVLDVLESL 119

Query: 205 -SDSMGLSFSKRRITLSTSGFVPNIARVGE------EIGVMLAISLHAVSNDLRNILVPI 257
            +            T++  G      R+ E           L  S+H      R  L+P+
Sbjct: 120 KTRYKAPGLIPSLSTIAPEGCDEFFKRLLEIKNEHYRERFQLQFSIHTTDMVTREWLIPV 179

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
            + +  E + +    +      R+IT  + +  G N    D   L K        + + P
Sbjct: 180 -KTWSFEEMKEYGELFFD-KGGRKITLNFAL--GDNMKI-DTGVLRKYFPPDVFLVKITP 234

Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351
            NP                F      +G +S IR
Sbjct: 235 VNPT---------------FRA--LENGINSFIR 251


>gi|160879028|ref|YP_001557996.1| radical SAM domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160427694|gb|ABX41257.1| Radical SAM domain protein [Clostridium phytofermentans ISDg]
          Length = 489

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ ++  S
Sbjct: 133 ALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEVGKQALDFLIANS 179

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
             RK   +   G GEPL NF  VK  ++       +   K R TL+T+G +   +I    
Sbjct: 180 GSRKNLEVDFFG-GEPLMNFQVVKDLVAYGRSQEEIHNKKFRFTLTTNGVLLNDDIIEFA 238

Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L+I      ND   +    N K   +++I   + +    N            
Sbjct: 239 NKEMSNVVLSIDGRREVNDT--MRPFRNGKGSYDLIIPKFKKFADSRNQTNYYVRGTFTH 296

Query: 291 GINDSPRDALNLIKI 305
              D   D  +L ++
Sbjct: 297 NNLDFSEDVKHLAEL 311


>gi|157364718|ref|YP_001471485.1| radical SAM domain-containing protein [Thermotoga lettingae TMO]
 gi|157315322|gb|ABV34421.1| Radical SAM domain protein [Thermotoga lettingae TMO]
          Length = 323

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 97/283 (34%), Gaps = 43/283 (15%)

Query: 103 IETVYIPE--KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           +++V  P     +  L +S+  GC + C  C  G       LTAEE+L Q+         
Sbjct: 29  VQSVQPPFSRNEKWVLIISTLKGCPVGCLMCDAG-GYYEGKLTAEEMLEQI--------- 78

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
                  E      V  K   I    MGEP  N  NV   L   SD    +      T++
Sbjct: 79  --DFLIKEYFPDGLVKVKKFKIQFARMGEPALN-KNVLTVLEKVSDHE--NLIPSISTVA 133

Query: 221 TSGFVPNIARVGEEIG------VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
             G      R+             L  S+H+   + R+ ++P+ RK+  + +      + 
Sbjct: 134 PYGCEEFFDRLLSIKQRHYQGRFQLQFSIHSTDENQRDEIIPV-RKWSFKDIALYGEKFV 192

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-------GCEYL 327
             +N R+I   + +   +  S   A  +          I + P NP           +  
Sbjct: 193 -KNNDRKIALNFALSNKVTVS---AEKIANTFSPDKFLIKITPVNPTYNAVNNQIESDID 248

Query: 328 CSD--QKDIVTFSECIKRSGYSSPIRTPRGL----DILAACGQ 364
            S         F E +K+SG+   +    G      I + CGQ
Sbjct: 249 LSTGFPVRHRVFMEELKKSGFEIIL--SIGEPEENKIGSNCGQ 289


>gi|224419301|ref|ZP_03657307.1| hypothetical protein HcanM9_08523 [Helicobacter canadensis MIT
          98-5491]
 gi|313142800|ref|ZP_07804993.1| predicted protein [Helicobacter canadensis MIT 98-5491]
 gi|313131831|gb|EFR49448.1| predicted protein [Helicobacter canadensis MIT 98-5491]
          Length = 52

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 4  LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61
          + K+++ G     L ++L          + R  QI+ W+YV    DF+ M ++ + +R
Sbjct: 1  MDKQNVFGFTLNSLSDSLKDF------PKFRAKQIYHWLYVHYENDFEKMENLPKNLR 52


>gi|219558901|ref|ZP_03537977.1| hypothetical protein MtubT1_16982 [Mycobacterium tuberculosis T17]
          Length = 114

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 10/105 (9%)

Query: 7   ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN- 65
             L  +       A+ ++G+P      R  Q+    Y R I D + M+D+   VR  +  
Sbjct: 17  RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72

Query: 66  QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE 110
             F  +     D       TRK L R            E+V +  
Sbjct: 73  AMFPNLLTASADITCDAGQTRKTLWR-----AVDGTMFESVLMRY 112


>gi|325661432|ref|ZP_08150058.1| hypothetical protein HMPREF0490_00792 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472381|gb|EGC75593.1| hypothetical protein HMPREF0490_00792 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 319

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 80/291 (27%), Gaps = 53/291 (18%)

Query: 86  RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145
            K       + I G V  E        +    +S+Q GC + C FC         N++ +
Sbjct: 33  IKADFLGLHKEINGVVNTEVDLTK---KWVATISTQKGCPMKCRFCDCPKYGFYGNVSLD 89

Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           E+  ++                             N+    MGEP  N +NV        
Sbjct: 90  ELCYEIETILEHEDVNITER--------------FNVHFARMGEPTFN-NNVLYFTEYML 134

Query: 206 DSMGLSFSKRRITLSTSGFV---------PNIARV----------GEEIGVMLAISLHAV 246
                   K  I + T   V          N+                    L  S+++ 
Sbjct: 135 QR----IVKSYIDVKTIHPVISTMLPKSNKNLKEFILKWCNIKNNTYNGDAGLQFSINST 190

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
            ND RN     N    LE +    +  P      + T  + + K   D+  D   L  + 
Sbjct: 191 DNDQRNEQF-NNMSLELEEISKIAKELPAPKGR-KYTLNFAVTK---DTIIDVKRLSDLF 245

Query: 307 KGIPAKINLIPF---NPWPGCEYLCSDQ----KDIVTFSECIKRSGYSSPI 350
                 + + P    N      +  +           F   + ++G+   +
Sbjct: 246 DKEKFIVKITPIHETNSAIDNGFDVTTSYTDYDVYREFERPLVKAGWDVIV 296


>gi|238923391|ref|YP_002936907.1| arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium rectale
           ATCC 33656]
 gi|238875066|gb|ACR74773.1| arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium rectale
           ATCC 33656]
          Length = 456

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 101/281 (35%), Gaps = 35/281 (12%)

Query: 54  SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR 113
            + ++E+   L   +     E   ++++        L+            E   I  K R
Sbjct: 37  DNSAKEIIEKLVDRYPQTEIEEAIQEVNE-------LKDNEELFTEDTYKER-IIDFKKR 88

Query: 114 GT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
            T    LC+     C+L C +C+             E   +    R+L+    G + ++ 
Sbjct: 89  QTVVKALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYETGKQALDF 135

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PN 227
           ++  S  R+   +   G GEPL N+D VK+ ++   +   L     R TL+T+G +    
Sbjct: 136 LIANSGSRRNLEVDFFG-GEPLMNWDVVKQLVAYGREQEKLHDKHFRFTLTTNGVLLNDE 194

Query: 228 IARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
           I      E   V+L+I      +D           Y L  ++   + +    +  +    
Sbjct: 195 IMEFANKEMDNVVLSIDGRKEVHDRMRPFRKGAGSYDL--IVPKFQKFAESRHQDKYYVR 252

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
                   D  +D L+L  +  G   +I++ P    P  EY
Sbjct: 253 GTYTHFNTDFSKDVLHLADL--GFK-QISVEPVVAQPTDEY 290


>gi|326204482|ref|ZP_08194339.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325985275|gb|EGD46114.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 447

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 98/272 (36%), Gaps = 34/272 (12%)

Query: 62  HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121
            LL++ +S    E   E+I+   ++  L            + E     +     LC+   
Sbjct: 45  ELLSEKYSGQVIEDAFEEIAELESKGLLFS-EDVYSDALNKWE----RKPVVKALCLHIC 99

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
             C+L C +C+  T     +             R+++    G + I+ ++  S GR+   
Sbjct: 100 HDCNLRCKYCFASTGSFGGH-------------RTMMDLETGRKAIDFLIEKSAGRRNLE 146

Query: 182 IVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV--PNIARV--GEE 234
           +   G GEPL NFD VK  +    I     G +F   R T++T+  +    I        
Sbjct: 147 VDFFG-GEPLMNFDVVKGIVEYARIREKESGKNF---RFTITTNAVLLNDEIKDFINKNM 202

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             V+L+I     +ND  N+   ++     E ++   +      N           +   D
Sbjct: 203 HNVVLSIDGRKETND--NMRPRVDGSGTYERILPKIQDMAESRNQDNYYVRGTFTRENLD 260

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
              D L+L    +G   +I++ P        Y
Sbjct: 261 FSEDVLHLAD--QGFK-QISIEPVVAAKDSGY 289


>gi|317470624|ref|ZP_07930010.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901915|gb|EFV23843.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA]
          Length = 453

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 29/246 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+    +   +             RS++    G + ++ +V  S
Sbjct: 93  ALCLHIAHDCNLACRYCFAEEGEYHGD-------------RSMMSFEVGKQALDFLVENS 139

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
             R+   +   G GEPL NF+ VK+ ++           K R TL+T+G +    +    
Sbjct: 140 GSRRNLEVDFFG-GEPLMNFEVVKQLVAYGRSLEEKHSKKFRFTLTTNGVLLDDEVMEFA 198

Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L+I      +D   +    N K   +++ID  + +  + N +          
Sbjct: 199 NREMANVVLSIDGRREVHDK--MRPTRNGKGSYDLIIDKFKKFAEMRNGKSYYVRGTFTH 256

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSS 348
              D  +D L+L    +G   +I++ P        Y    +D   I+   + + +     
Sbjct: 257 DNLDFSKDVLHLAD--EGFD-QISVEPVVGPEEERYTIKEADLPKIMEEYDLLAKE---- 309

Query: 349 PIRTPR 354
            IR  +
Sbjct: 310 IIRREK 315


>gi|239618428|ref|YP_002941750.1| Fe-S-cluster redox enzyme-like protein [Kosmotoga olearia TBF
           19.5.1]
 gi|239507259|gb|ACR80746.1| Fe-S-cluster redox enzyme-like protein [Kosmotoga olearia TBF
           19.5.1]
          Length = 324

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 87/257 (33%), Gaps = 40/257 (15%)

Query: 86  RKWLLRFPARCIGGPVEIETVY-----IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV- 139
           +K L            E+E V      +    +  + +S+ VGC + CS C  G      
Sbjct: 9   KKELALVFVGRTSMGNEVEFVESIQPPLSRNEKEVIIISTLVGCPVGCSMCDAG--GFYG 66

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
             LTA+E+L Q+    +                  V  K   I    MGEP  N D V  
Sbjct: 67  GKLTAKEMLEQIEYVVNFR-----------FGGRKVPSKKFKIQFARMGEPAFN-DAVID 114

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPN-----------IARVGEEIGVMLAISLHAVSN 248
            L    +     F    +  S S   P            I          L  S+H+   
Sbjct: 115 VLDRLPEE----FEAPGLLPSVSTIAPKGREAFFERLYWIKERHYGGRFQLQFSIHSTDL 170

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308
             RN ++P+  K+ LE + +  + +      R+IT  + + K   D+  D   +IK    
Sbjct: 171 RQRNEIIPV-PKWHLEKIAEYGKEFV-KEGDRKITLNFALSK---DNIVDPGIIIKHFDP 225

Query: 309 IPAKINLIPFNPWPGCE 325
               I + P NP    +
Sbjct: 226 EKFLIKITPVNPTYSAK 242


>gi|167746208|ref|ZP_02418335.1| hypothetical protein ANACAC_00913 [Anaerostipes caccae DSM 14662]
 gi|167654201|gb|EDR98330.1| hypothetical protein ANACAC_00913 [Anaerostipes caccae DSM 14662]
          Length = 442

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 29/246 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+    +   +             RS++    G + ++ +V  S
Sbjct: 82  ALCLHIAHDCNLACRYCFAEEGEYHGD-------------RSMMSFEVGKQALDFLVENS 128

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
             R+   +   G GEPL NF+ VK+ ++           K R TL+T+G +    +    
Sbjct: 129 GSRRNLEVDFFG-GEPLMNFEVVKQLVAYGRSLEEKHSKKFRFTLTTNGVLLDDEVMEFA 187

Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L+I      +D   +    N K   +++ID  + +  + N +          
Sbjct: 188 NREMANVVLSIDGRKEVHDK--MRPTRNGKGSYDLIIDKFKKFAEMRNGKSYYVRGTFTH 245

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSS 348
              D  +D L+L    +G   +I++ P        Y    +D   I+   + + +     
Sbjct: 246 DNLDFSKDVLHLAD--EGFD-QISVEPVVGPEEERYTIKEADLPKIMEEYDLLAKE---- 298

Query: 349 PIRTPR 354
            IR  +
Sbjct: 299 IIRREK 304


>gi|313888447|ref|ZP_07822114.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845476|gb|EFR32870.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 450

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 27/208 (12%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P+     LC+     C+L C +C+        +             RSL+    G + ++
Sbjct: 89  PQNVVKALCLHVAHDCNLRCKYCFASQGDFKGD-------------RSLMTFETGKKALD 135

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--P 226
            ++  S  R+   +   G GEPL NFD VKK ++   +         R T++T+G +   
Sbjct: 136 FLLQNSGNRRNLEVDFFG-GEPLMNFDLVKKLVAYGREEEKKYDKHFRFTITTNGVLLND 194

Query: 227 NIARVGEEI--GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
            I     E    V+L+I      ND   +    N K   ++++   +        +    
Sbjct: 195 EIEEFINENMDNVVLSIDGRKEIND--EMRPTTNGKGSYDIIVPKFKELIDKRGDKDYFI 252

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAK 312
                    D   D       LK   + 
Sbjct: 253 RGTFTNENLDFSED-------LKDFYSH 273


>gi|255994316|ref|ZP_05427451.1| arylsulfatase regulator [Eubacterium saphenum ATCC 49989]
 gi|255993029|gb|EEU03118.1| arylsulfatase regulator [Eubacterium saphenum ATCC 49989]
          Length = 520

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 108/332 (32%), Gaps = 45/332 (13%)

Query: 15  EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
            EL +              R       IY     D     + +  ++    Q F  +  E
Sbjct: 54  AELSKISADEAFAALEHAYR-------IYTEKKDDVLSAGNSALNLKSENRQLFDYLTAE 106

Query: 75  ---IVDEKISCDGT-RKW------LLRFPARCIGGPVEIETVY--------IPEKSRGTL 116
              I     S  G+  K       LL      +   +  E VY          + +   +
Sbjct: 107 AGVIDGVLNSGCGSDVKLSDVIEVLLDIRELTLCDELFTEDVYEGIAAGLKKSQSTLKAI 166

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           C+    GC++ C +C+ G  +   +             ++L+ D      I+ ++  S  
Sbjct: 167 CLHVAHGCNMRCGYCFAGDGEYNGS-------------KALMDDATAKAAIDFLIRESKN 213

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234
           R+   +   G GEPL NFD +K ++  A      +    R TL+T+G +    +     E
Sbjct: 214 RRNLEVDFFG-GEPLLNFDVIKNTVKYARSIEKSANKNFRFTLTTNGILIDDEVIEFSNE 272

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               + +SL     +  + +         E++ D    +      +             D
Sbjct: 273 QMSNVVMSLDG-RKEKHDRMRKHAGLGSYELIKDKFIKFAKARKQKDYYIRGTYTGYNTD 331

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
             +D L++  +  G   +I+L P       EY
Sbjct: 332 FSKDVLHIADL--GFD-EISLEPVVACDEAEY 360


>gi|225548076|ref|ZP_03769361.1| hypothetical protein RUMHYD_00055 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040752|gb|EEG50998.1| hypothetical protein RUMHYD_00055 [Blautia hydrogenotrophica DSM
           10507]
          Length = 454

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E        R L+    G + ++ ++  S
Sbjct: 97  ALCLHIAHDCNLACRYCFAEE---------GEYHGH----RELMSYEVGKQALDFLIANS 143

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231
             R+   +   G GEPL N+  VK+ +    +   L     R TL+T+G      I    
Sbjct: 144 GSRRNLEVDFFG-GEPLMNWKVVKELVRYGREQEKLHDKNFRFTLTTNGVALNDEIMEFC 202

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      +D           Y L  ++   + +    N  +        +
Sbjct: 203 NREMGNVVLSVDGRKEVHDFMRPFPKGAGSYDL--ILPKFQKFAESRNQDKYYVRGTFTR 260

Query: 291 GINDSPRDALNLIKI 305
              D  +D L+L  +
Sbjct: 261 HNLDFSKDVLHLADL 275


>gi|240144502|ref|ZP_04743103.1| radical SAM domain protein [Roseburia intestinalis L1-82]
 gi|257203489|gb|EEV01774.1| radical SAM domain protein [Roseburia intestinalis L1-82]
          Length = 457

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 94/263 (35%), Gaps = 30/263 (11%)

Query: 104 ETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159
           E   +  K R T    LC+     C+L C +C+             E   +    R+L+ 
Sbjct: 84  ENYIMDFKKRPTVVKALCLHIAHDCNLACQYCFAEE---------GEYHGR----RALMS 130

Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
              G + ++ ++  S  R+   +   G GEPL N+  VK  ++   +   L     R TL
Sbjct: 131 FEVGKKALDFLIANSGNRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKLHDKNFRFTL 189

Query: 220 STSGFV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
           +T+G +    I      E   V+L+I      +D           Y L  ++   + +  
Sbjct: 190 TTNGVLLNDEIMEFCNKEMANVVLSIDGRKEVHDKMRPFRKGAGSYDL--IVPKFQKFAE 247

Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIV 335
             +  +            D   D L+L  +  G   +I++ P    P   Y  +++    
Sbjct: 248 SRHQDKYYVRGTFTHYNPDFAADVLHLADL--GFK-QISVEPVVAEPSEPYAITEEDLPQ 304

Query: 336 TFSECIKRSGYSSPIRTPR-GLD 357
            F E       +  +R  + G D
Sbjct: 305 LFEEY--DKLAAEMVRRHKEGDD 325


>gi|207111233|ref|ZP_03245395.1| hypothetical protein HpylH_19398 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 54

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFS 338
           + +NDS   A  L+K+L GI +K+NLI FNP  G ++     +    F+
Sbjct: 1   RDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFA 49


>gi|225568642|ref|ZP_03777667.1| hypothetical protein CLOHYLEM_04720 [Clostridium hylemonae DSM
           15053]
 gi|225162570|gb|EEG75189.1| hypothetical protein CLOHYLEM_04720 [Clostridium hylemonae DSM
           15053]
          Length = 468

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 20/207 (9%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE V   +     LC+     C+L C +C+             E   +    R+L+    
Sbjct: 95  IEEVKKRKTVVKALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEV 141

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
           G + ++ ++  S  R    +   G GEPL N+  VK  ++       +     R T++T+
Sbjct: 142 GKKALDFLIANSGSRHNLEVDFFG-GEPLMNWQVVKDLVAYGRSQEKIHDKHFRFTVTTN 200

Query: 223 GFV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           G +    I      E   V+L++      ND   +    N K   E+++   +      N
Sbjct: 201 GVLLNDEIQEFVNREMDNVVLSLDGRKEIND--RMRPFRNGKGSYELIVPKFQKLAESRN 258

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKI 305
             +        +   D   D L+   +
Sbjct: 259 QEKYYIRGTFTRNNLDFAEDILHFADL 285


>gi|125973423|ref|YP_001037333.1| radical SAM family protein [Clostridium thermocellum ATCC 27405]
 gi|256004402|ref|ZP_05429383.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|125713648|gb|ABN52140.1| Radical SAM [Clostridium thermocellum ATCC 27405]
 gi|255991686|gb|EEU01787.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360]
 gi|316940341|gb|ADU74375.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313]
          Length = 450

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 24/196 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            LC+     C+L C +C+  T      RN+ + E+               G + I+ ++ 
Sbjct: 95  ALCLHISHDCNLRCKYCFASTGNFGGQRNMMSLEV---------------GKKAIDFLIS 139

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIA 229
            S  RK   I   G GEP+ NFD VK  +  A           R TL+T+G +    NI 
Sbjct: 140 ESGNRKNLEIDFFG-GEPMMNFDVVKGIIEYARQKEKEHNKNFRFTLTTNGLLLNDENIK 198

Query: 230 RVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
            + E +  ++L+I      ND   I +  +  Y  + ++   ++     N          
Sbjct: 199 YINENMQNIVLSIDGRKEVNDRMRIRIDGSGCY--DDILPKFKYVAESRNQDNYYVRGTF 256

Query: 289 LKGINDSPRDALNLIK 304
            +   D   D L+L  
Sbjct: 257 TRENMDFSNDVLHLAD 272


>gi|281417626|ref|ZP_06248646.1| Radical SAM domain protein [Clostridium thermocellum JW20]
 gi|281409028|gb|EFB39286.1| Radical SAM domain protein [Clostridium thermocellum JW20]
          Length = 450

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 24/196 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            LC+     C+L C +C+  T      RN+ + E+               G + I+ ++ 
Sbjct: 95  ALCLHISHDCNLRCKYCFASTGNFGGQRNMMSLEV---------------GKKAIDFLIS 139

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIA 229
            S  RK   I   G GEP+ NFD VK  +  A           R TL+T+G +    NI 
Sbjct: 140 ESGNRKNLEIDFFG-GEPMMNFDVVKGIIEYARQKEKEHNKNFRFTLTTNGLLLNDENIK 198

Query: 230 RVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
            + E +  ++L+I      ND   I +  +  Y  + ++   ++     N          
Sbjct: 199 YINENMQNIVLSIDGRKEVNDRMRIRIDGSGCY--DDILPKFKYVAESRNQDNYYVRGTF 256

Query: 289 LKGINDSPRDALNLIK 304
            +   D   D L+L  
Sbjct: 257 TRENMDFSNDVLHLAD 272


>gi|167768547|ref|ZP_02440600.1| hypothetical protein CLOSS21_03106 [Clostridium sp. SS2/1]
 gi|167710071|gb|EDS20650.1| hypothetical protein CLOSS21_03106 [Clostridium sp. SS2/1]
          Length = 49

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 8  SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59
           L  M  +E++E +  IG      + R  QI++W +         M+++ + 
Sbjct: 2  DLKSMTLQEMQEYMESIG----EKKFRAKQIYEWFHKHLALSLDEMNNVPKN 49


>gi|291560706|emb|CBL39506.1| Arylsulfatase regulator (Fe-S oxidoreductase) [butyrate-producing
           bacterium SSC/2]
          Length = 458

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 20/194 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ +V  S
Sbjct: 93  ALCLHIAHDCNLACRYCFAEE---------GEYKGR----RALMSAEVGKKALDFLVENS 139

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
             R+   +   G GEPL NFD VK+ ++           K R TL+T+G +   +I    
Sbjct: 140 GNRRNLEVDFFG-GEPLMNFDVVKEIVAYGRSLEETHDKKFRFTLTTNGVLLNDDIMEFA 198

Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      +D   +    N K   + +ID  + +    N ++         
Sbjct: 199 NKEMDNVVLSVDGRKEVHDY--MRPFRNGKGSYDFVIDKFKKFADSRNQQKYYVRGTFTH 256

Query: 291 GINDSPRDALNLIK 304
              D  +D ++L  
Sbjct: 257 HNLDFSKDVMHLAD 270


>gi|317499049|ref|ZP_07957330.1| radical SAM superfamily protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893699|gb|EFV15900.1| radical SAM superfamily protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 458

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 20/194 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ +V  S
Sbjct: 93  ALCLHIAHDCNLACRYCFAEE---------GEYKGR----RALMSAEVGKKALDFLVENS 139

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
             R+   +   G GEPL NFD VK+ ++           K R TL+T+G +   +I    
Sbjct: 140 GNRRNLEVDFFG-GEPLMNFDVVKEIVAYGRSLEETHDKKFRFTLTTNGVLLNDDIMEFA 198

Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      +D   +    N K   + +ID  + +    N ++         
Sbjct: 199 NKEMDNVVLSVDGRKEVHDY--MRPFRNGKGSYDFVIDKFKKFADSRNQQKYYVRGTFTH 256

Query: 291 GINDSPRDALNLIK 304
              D  +D ++L  
Sbjct: 257 HNLDFSKDVMHLAD 270


>gi|167766768|ref|ZP_02438821.1| hypothetical protein CLOSS21_01276 [Clostridium sp. SS2/1]
 gi|167711522|gb|EDS22101.1| hypothetical protein CLOSS21_01276 [Clostridium sp. SS2/1]
          Length = 458

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 20/194 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ +V  S
Sbjct: 93  ALCLHIAHDCNLACRYCFAEE---------GEYKGR----RALMSAEVGKKALDFLVENS 139

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
             R+   +   G GEPL NFD VK+ ++           K R TL+T+G +   +I    
Sbjct: 140 GNRRNLEVDFFG-GEPLMNFDVVKEIVAYGRSLEETHDKKFRFTLTTNGVLLNDDIMEFA 198

Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      +D   +    N K   + +ID  + +    N ++         
Sbjct: 199 NKEMDNVVLSVDGRKEVHDY--MRPFRNGKGSYDFIIDKFKKFADSRNQQKYYVRGTFTH 256

Query: 291 GINDSPRDALNLIK 304
              D  +D ++L  
Sbjct: 257 HNLDFSKDVMHLAD 270


>gi|226323925|ref|ZP_03799443.1| hypothetical protein COPCOM_01702 [Coprococcus comes ATCC 27758]
 gi|225207474|gb|EEG89828.1| hypothetical protein COPCOM_01702 [Coprococcus comes ATCC 27758]
          Length = 465

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 20/204 (9%)

Query: 106 VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165
           V   +     LC+     C+L C +C+             E   +    R+L+    G +
Sbjct: 98  VIKRKTVVKALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMTYEVGKK 144

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
            ++ ++  S  R+   +   G GEPL N+  VK  ++   +   L     R T++T+G +
Sbjct: 145 ALDFLIANSGTRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKLHDKHFRFTVTTNGVL 203

Query: 226 --PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
               I      E   V++++      ND   +    N K   ++++   +      N  R
Sbjct: 204 LNDEIQEFINKEMDNVVISLDGRKEVND--RMRPFRNGKGSYDLIVPKFQKLADSRNQER 261

Query: 282 ITFEYVMLKGINDSPRDALNLIKI 305
                   +   D   D  +  ++
Sbjct: 262 YYIRGTFTRNNLDFSEDVKHFAEL 285


>gi|317132372|ref|YP_004091686.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315470351|gb|ADU26955.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 452

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 91/265 (34%), Gaps = 39/265 (14%)

Query: 51  QGMSDI-SQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP 109
           + M+ +  Q+    L   + +       E+         L         G +    VY  
Sbjct: 37  EDMTRVLPQKAGERLAARYGVNALREAWEE---------LFALKE---DGRLFSPDVYAA 84

Query: 110 EKSRG------TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
            ++ G      ++C++    C+L CS+C+  T                   R L+    G
Sbjct: 85  YRNAGDMAPVKSMCLNVAHDCNLRCSYCFASTGDFGG-------------GRKLMPFSVG 131

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
            + ++ ++  +  R+   +   G GEP+ NFD VK+ ++   ++   +    R T +T+ 
Sbjct: 132 KQAVDFLLEHAGNRRNLELDFFG-GEPMMNFDVVKEVVAYGREAEQKAGKHIRFTTTTNA 190

Query: 224 FVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
            V +  ++     E   V+L+I      +D     +  +  Y  + ++   +        
Sbjct: 191 LVLDDEKIDFINREMYNVVLSIDGRQSVHDRMRRRIDGSGSY--QTILANIKRLVERREH 248

Query: 280 RRITFEYVMLKGINDSPRDALNLIK 304
           R             D   D L L  
Sbjct: 249 RNYYVRGTFTHENLDFAEDVLALAD 273


>gi|255505152|ref|ZP_05344771.3| radical SAM domain protein [Bryantella formatexigens DSM 14469]
 gi|255269307|gb|EET62512.1| radical SAM domain protein [Bryantella formatexigens DSM 14469]
          Length = 463

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 24/207 (11%)

Query: 107 YIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
            I  K R T    LC+     C+L C +C+             E   +    R+L+    
Sbjct: 94  IIDFKKRKTVVKALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEV 140

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
           G + ++ ++  S  R+   +   G GEPL N+  VK  +    +   L   K R TL+T+
Sbjct: 141 GKKALDFLIANSGSRRNLEVDFFG-GEPLMNWQVVKDLVKYGREQEALHDKKFRFTLTTN 199

Query: 223 GFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           G + N   +     E   V+L+I      +D   +      K   ++++   + +     
Sbjct: 200 GVLLNDEVMEFCNREMANVVLSIDGRKEVHDT--MRPFRGGKGSYDLVLPKFQKFAESRG 257

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKI 305
             +        +   D   D L+L  +
Sbjct: 258 QEKYYVRGTFTRNNLDFAEDVLHLADL 284


>gi|312792813|ref|YP_004025736.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179953|gb|ADQ40123.1| Radical SAM domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 453

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 81/240 (33%), Gaps = 25/240 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C+     C L C +C+  +                   R L+    G + I+ ++  S
Sbjct: 92  AMCLHVAHDCDLRCRYCFASSGSFK-------------QERKLMSFDVGKKTIDFLLQNS 138

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS---MGLSFSKRRITLSTSGFVPNIARV 231
             R+   +   G GEPL NFD VKK +  A           S    T +T+     I  +
Sbjct: 139 GSRQNLEVDFFG-GEPLLNFDVVKKIVEYARQEEKKYNKKISFTLTTNATNLSDDIIEYL 197

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            + +  V+L+       ND   + +  N       + D    +    N +          
Sbjct: 198 NQNMENVVLSHDGRPQVNDF--MRIDRNGNGTYSKITDNILRFIQKRNGKTYYVRGTFTA 255

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSS 348
              D  +D ++L  +  GI  +I++ P        +    S  + I    + +     ++
Sbjct: 256 KNLDFSKDVMHLYSL--GIK-EISIEPVVLDKSSPWAIRESHIERIKEEYDILAEEFINA 312


>gi|257066316|ref|YP_003152572.1| Fe-S-cluster redox enzyme-like protein [Anaerococcus prevotii DSM
           20548]
 gi|256798196|gb|ACV28851.1| Fe-S-cluster redox enzyme-like protein [Anaerococcus prevotii DSM
           20548]
          Length = 322

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 91/268 (33%), Gaps = 39/268 (14%)

Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
             +E + +    +  + VSSQ GC + C+FC         N +  E++ ++    +L G 
Sbjct: 46  ERVENIEVDLNDKLVVTVSSQKGCPMNCNFCDCPKLGFHGNSSVAELISEISTGIALSGV 105

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
             G                 N+    MGEP  NF NV +S  I  +     F +    +S
Sbjct: 106 KDGQR--------------LNVHYARMGEPTFNF-NVIESAKIVGEFANKHFKEYHPVVS 150

Query: 221 TSGFVPNIARV--------------GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
           T     +  R+                  G+ L  S++ +  + RN     N+   L+ +
Sbjct: 151 TM-LPKDNKRLEKFLLEWTSLMKSNNWNGGLGLQFSINTLYEEDRNKAF-DNKSLSLQQI 208

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP---G 323
            D  +  P      + T  + +      S  D   + K        + + P +       
Sbjct: 209 SDLAKKLPNPVGR-KYTLNFAVTSE---SDLDVNKMNKYFDKEKFVVKITPIHETKRAIE 264

Query: 324 CEYLCSDQKDI-VTFSECIKRSGYSSPI 350
            +Y    + D+   F + +   G+   +
Sbjct: 265 NKYEIVKEFDVYEKFEKPLVEDGWDVIV 292


>gi|220927987|ref|YP_002504896.1| radical SAM protein [Clostridium cellulolyticum H10]
 gi|219998315|gb|ACL74916.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
          Length = 447

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 77/219 (35%), Gaps = 29/219 (13%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+  T     +             R+++    G + I+ ++  S
Sbjct: 93  ALCLHICHDCNLRCKYCFASTGSFGGH-------------RTMMDLETGKKAIDFLIEKS 139

Query: 175 VGRKISNIVMMGMGEPLCNFDNV---KKSLSIASDSMGLSFSKRRITLSTSGFV--PNIA 229
            GR+   +   G GEPL NFD V    K   I     G +F   R T++T+  +    I 
Sbjct: 140 AGRRNLEVDFFG-GEPLMNFDVVKGIVKYARIREKEAGKNF---RFTITTNAVLLNEEIK 195

Query: 230 RV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
                    V+L+I     +ND     V  +  Y    ++          N         
Sbjct: 196 DFINANMHNVVLSIDGRKETNDRMRPRVDGSGTYT--KILPKILDMAESRNQDNYYVRGT 253

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
             +   D   D L+L    +G   +I++ P        Y
Sbjct: 254 FTRENLDFSNDVLHLAD--QGFK-QISIEPVVAAKDSGY 289


>gi|229828664|ref|ZP_04454733.1| hypothetical protein GCWU000342_00730 [Shuttleworthia satelles DSM
           14600]
 gi|229793258|gb|EEP29372.1| hypothetical protein GCWU000342_00730 [Shuttleworthia satelles DSM
           14600]
          Length = 476

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 109/311 (35%), Gaps = 41/311 (13%)

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET----VYIPEKSR-GT 115
           R  + + +  +    ++E  +     K L+    + +  P   ET    V     +    
Sbjct: 44  RERMAEKYPKVSEADIEEVFAE---IKALI--DDQSLFTPDHYETYMDDVLKRRPTVVKA 98

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           LC++    C+L C +C+                      R L+    G    + ++  S 
Sbjct: 99  LCLNVAHDCNLACKYCFADEGTYCG------------GPRELMSFETGKNAFDFLIANSG 146

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
            R+   +   G GEPL N++ VKK ++       L   K R TL+T+G +     + +EI
Sbjct: 147 NRRNLEVDFFG-GEPLMNWEVVKKLVAYGRQEEKLYDKKFRFTLTTNGVL-----LNDEI 200

Query: 236 GVMLAISLHAVSNDL--RNILVPINRKY-----PLEMLIDACRHYPGLSNARRITFEYVM 288
              L   +  V   +  R  +    R +       + ++   +        +R       
Sbjct: 201 QDFLNREMSNVVLSIDGRKKIHNQMRPFRGGQDSYDRIVPKFQRLAESRGQQRYYARGTF 260

Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348
            +   D  +D L++  +  G   +I++ P    P  +Y   ++     F+E       + 
Sbjct: 261 TRNNLDFSQDVLHIADL--GFK-QISVEPVVAQPTDDYALREEDLPKLFAEY--DRLAAE 315

Query: 349 PIRTPRGLDIL 359
            +R   G D  
Sbjct: 316 MVRR-MGTDED 325


>gi|295094228|emb|CBK83319.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Coprococcus sp.
           ART55/1]
          Length = 454

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 86/228 (37%), Gaps = 27/228 (11%)

Query: 107 YIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
            I  K R T    LC+     C+L C +C+ G  +   +             R+L+    
Sbjct: 81  IIDFKKRKTVVKALCLHIAHDCNLACRYCFAGEGEYKGD-------------RALMSLEV 127

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
             + ++ +V  S  R+   +   G GEPL N+D VKK++            K R TL+T+
Sbjct: 128 AKKSLDFLVANSGLRRNLEVDFFG-GEPLMNWDVVKKTVEYGRSLEEKYDKKFRFTLTTN 186

Query: 223 GFV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           G +    I      E   V+L+I      +D   +    N K   ++++   + +     
Sbjct: 187 GVLLNDEIMEFANREMANVVLSIDGRKEVHDY--MRPTRNGKGSYDVILSKFQEFAKKRA 244

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
            +             D  +D L++  +  G   +I++ P    P   Y
Sbjct: 245 GKSYYVRGTYTHNNLDFSQDVLHMADL--GFD-QISVEPVVSLPDEPY 289


>gi|168334725|ref|ZP_02692857.1| Radical SAM domain protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 451

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 75/194 (38%), Gaps = 18/194 (9%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+           A E   +    R L+    G   I+ ++  S
Sbjct: 94  ALCLHVAHDCNLGCKYCF-----------AGE--GEYHGPRGLMSVEVGKRAIDFLIESS 140

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
             R    +   G GEPL NF  V++ +  A+     +  K R TL+T+G +    I    
Sbjct: 141 GVRTNLEVDFFG-GEPLMNFKVVRELVDYANSRAEQTNKKFRFTLTTNGVLLNDQIIDFL 199

Query: 233 EEIGVMLAISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
            E    + +SL     ++ + + P  N K   ++++   +        ++          
Sbjct: 200 NEYMDNVVLSLDG-RPEINDQMRPTANGKGSYDIILPKFKKLVEKRGGKKYYIRGTFTHK 258

Query: 292 INDSPRDALNLIKI 305
             D  +D L++ ++
Sbjct: 259 NLDFAKDVLHIAEL 272


>gi|326791643|ref|YP_004309464.1| radical SAM protein [Clostridium lentocellum DSM 5427]
 gi|326542407|gb|ADZ84266.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427]
          Length = 449

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 41/266 (15%)

Query: 50  FQGMSDISQ-EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVY 107
            +    +S+  +     + F I       E+         L+       +    + ET+ 
Sbjct: 32  VEEAEKLSKEALIEKYKEEFEIEAINEAYEE---------LMSLKEEGMLYTADQYETLV 82

Query: 108 IPEKSR----GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
               +R      LC+     C+L C +C+ G           E        RSL+    G
Sbjct: 83  PAFLNREPVVKALCLHVAHDCNLKCKYCFAGE---------GEYHGH----RSLMSIEVG 129

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLS 220
            + ++ ++  S  RK   I   G GEPL N++ VK++++ A +     G +F   R T++
Sbjct: 130 KKAVDFIIENSKHRKNIEIDFFG-GEPLMNWEMVKETVAYAREREKETGKNF---RFTMT 185

Query: 221 TSGFV---PNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           T+G +     I  + E +  V+L++      ND  ++    N K   ++++   +     
Sbjct: 186 TNGVLLNDEIIDYLNENMHNVVLSLDGRPEVND--HMRPTANGKGSYDVILPKFKKLVEK 243

Query: 277 SNARRITFEYVMLKGINDSPRDALNL 302
              ++            D   D  ++
Sbjct: 244 RGNQKYYLRGTFTHHNLDFSEDVKHM 269


>gi|222528638|ref|YP_002572520.1| radical SAM domain-containing protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455485|gb|ACM59747.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 453

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 81/240 (33%), Gaps = 25/240 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C+     C L C +C+  +                   R L+    G + I  ++  S
Sbjct: 92  AMCLHVAHDCDLRCRYCFASSGSFK-------------QERKLMSFDVGKKAIGFLLQNS 138

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS---MGLSFSKRRITLSTSGFVPNIARV 231
             R+   +   G GEPL NFD VKK +  A +         S    T +T+     I  +
Sbjct: 139 GSRQNLEVDFFG-GEPLLNFDVVKKIVEYAREEEKKYNKKISFTLTTNATNLSDDIIEYL 197

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            + +  V+L+       ND   + +  N       + +    +    N +          
Sbjct: 198 NQNMENVVLSHDGRPEVNDF--MRIDRNGNGTYSKITNNILRFIQKRNGKTYYVRGTFTA 255

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSS 348
              D  +D L+L  +  GI  +I++ P        +    S  + I    + +     ++
Sbjct: 256 KNLDFSKDVLHLYSL--GIK-EISVEPVVLDKSSPWAIRESHIERIKEEYDILAEEYINA 312


>gi|225377733|ref|ZP_03754954.1| hypothetical protein ROSEINA2194_03384 [Roseburia inulinivorans DSM
           16841]
 gi|225210410|gb|EEG92764.1| hypothetical protein ROSEINA2194_03384 [Roseburia inulinivorans DSM
           16841]
          Length = 458

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 84/231 (36%), Gaps = 27/231 (11%)

Query: 104 ETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159
           E   +  K R T    LC+     C+L C +C+             E   +    R+L+ 
Sbjct: 85  ENYMMDFKKRPTVVKALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMS 131

Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
              G + ++ ++  S  R+   +   G GEPL N+  VK  ++   +   +     R TL
Sbjct: 132 FETGKKALDFLIANSGNRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHNKNFRFTL 190

Query: 220 STSGFV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
           +T+G +    I      E   V+L+I      +D           Y L  ++   + +  
Sbjct: 191 TTNGVLLNDEIMEFANKEMGNVVLSIDGRKEVHDHMRPFRKGAGSYDL--IVPKFQKFAD 248

Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
             N  +            D   D L+L  +  G   +I++ P    P  +Y
Sbjct: 249 SRNQDKYYVRGTFTHNNLDFSNDVLHLADL--GFK-QISVEPVVAQPTEDY 296


>gi|302871247|ref|YP_003839883.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574106|gb|ADL41897.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 453

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 82/240 (34%), Gaps = 25/240 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C+     C L C +C+  +                   R L+    G + I+ ++  S
Sbjct: 92  AMCLHVAHDCDLRCRYCFASSGSFK-------------QERKLMSFDVGKKAIDFLLQNS 138

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS---MGLSFSKRRITLSTSGFVPNIARV 231
             R+   +   G GEPL NFD VKK +  A +         S    T +T+     I  +
Sbjct: 139 GSRQNLEVDFFG-GEPLLNFDVVKKIVEYAREEEKKYNKKISFTLTTNATNLSDDIIEYL 197

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            + I  V+L+       ND   + +  N       + +    +    N +          
Sbjct: 198 NQNIENVVLSHDGRPQVNDF--MRIDRNGNGTYSKITNNILRFIQKRNGKTYYVRGTFTA 255

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSS 348
              D  +D L+L  +  GI  +I++ P        +    S  + I    + +     ++
Sbjct: 256 KNLDFSKDVLHLYSL--GIK-EISVEPVVLDKSSPWAIRESHIERIKEEYDILAEEYINA 312


>gi|295108468|emb|CBL22421.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Ruminococcus obeum
           A2-162]
          Length = 454

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ ++  S
Sbjct: 98  ALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSFEVGKKALDFLIANS 144

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             RK   +   G GEPL N+  VK  ++   +   L   K R TL+T+G + N   +   
Sbjct: 145 GSRKNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKLHNKKFRFTLTTNGVLLNDEVMEFC 203

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      +D           Y L  +I   R +    N  +         
Sbjct: 204 NKEMGNVVLSVDGRKEVHDYMRPFRKGAGSYDL--IIPKFRKFAESRNQDKYYVRGTFTH 261

Query: 291 GINDSPRDALNLIKI 305
              D  +D L+L  +
Sbjct: 262 HNLDFSKDVLHLADL 276


>gi|253578289|ref|ZP_04855561.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850607|gb|EES78565.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 455

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 85/251 (33%), Gaps = 29/251 (11%)

Query: 62  HLLNQHF---SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
             L   +    I        K+  DG    L     + +   V  E     +     LC+
Sbjct: 48  EKLENKYNREDIETSVRECNKLKEDG---MLF---TKDVYENVIEEFSNNRQTVVKALCL 101

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
                C+L C +C+             E   +    R+L+    G + ++ ++  S  RK
Sbjct: 102 HIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANSGSRK 148

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV----GEE 234
              +   G GEPL N+  VK  +    +   L   K R TL+T+G + N   +     E 
Sbjct: 149 NLEVDFFG-GEPLMNWQVVKDLVKYGREQEKLHNKKFRFTLTTNGVLLNDEVMEFCNKEM 207

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             V+L++      +D           Y L  ++   + +    N  +            D
Sbjct: 208 GNVVLSVDGRKEVHDYMRPFRKGAGSYDL--IMPKFQKFAESRNQDKYYVRGTFTHHNLD 265

Query: 295 SPRDALNLIKI 305
             +D L+L  +
Sbjct: 266 FSKDVLHLADL 276


>gi|332981504|ref|YP_004462945.1| Radical SAM domain-containing protein [Mahella australiensis 50-1
           BON]
 gi|332699182|gb|AEE96123.1| Radical SAM domain protein [Mahella australiensis 50-1 BON]
          Length = 454

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 77/204 (37%), Gaps = 30/204 (14%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C+     C++ CS+C+  T                   R+L+    G   ++ +V  S
Sbjct: 96  AMCLHLSHDCNMRCSYCFASTGDFGGQ-------------RTLMTADTGRAALDFLVRHS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV---PNI 228
             R+   +   G GEPL NFD +K  +        S G      R T++T+G       I
Sbjct: 143 GSRRHLEVDFFG-GEPLMNFDAMKDIVEYGRRLEQSSGKHI---RFTVTTNGIALDQEKI 198

Query: 229 ARVGEEIG-VMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
             + + +  V+L++    A+++ +R  +   N K   ++++   +               
Sbjct: 199 KYINDNMDNVVLSMDGRPAINDAMRKTI---NGKGTYDIIMPKFKSLVDNRKHGDYYIRG 255

Query: 287 VMLKGINDSPRDALNLIKILKGIP 310
              K   D   D ++++   KG  
Sbjct: 256 TFTKRNLDFAEDVMHIVD--KGFD 277


>gi|153854676|ref|ZP_01995926.1| hypothetical protein DORLON_01924 [Dorea longicatena DSM 13814]
 gi|149752780|gb|EDM62711.1| hypothetical protein DORLON_01924 [Dorea longicatena DSM 13814]
          Length = 465

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 76/207 (36%), Gaps = 20/207 (9%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE V   +     LC+     C+L C +C+             E   +    R+L+    
Sbjct: 95  IEEVKKRKTVVKALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSYEV 141

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
           G + ++ ++  S  R+   +   G GEPL N+  VK  ++   +   +     R T++T+
Sbjct: 142 GKKALDFLIKNSGNRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHNKHFRFTITTN 200

Query: 223 GFV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           G +    I      E   V+L++      ND   +    N K   ++++   +      N
Sbjct: 201 GVLLNDEIQEFVNKEMDNVVLSLDGRKEINDQ--MRPFRNGKGSYDLIVPKFQKLAESRN 258

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKI 305
             +        +   D   D ++   +
Sbjct: 259 QEKYYIRGTFTRNNLDFSNDIMHFADL 285


>gi|312879492|ref|ZP_07739292.1| glycyl-radical enzyme activating protein family [Aminomonas
           paucivorans DSM 12260]
 gi|310782783|gb|EFQ23181.1| glycyl-radical enzyme activating protein family [Aminomonas
           paucivorans DSM 12260]
          Length = 301

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 84/274 (30%), Gaps = 44/274 (16%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
            RCIG    +E+      S     V   +   + C  C +    L     A E++ + L 
Sbjct: 53  DRCIGCGRCVESCPHKALSFVNDGVHVDLSRCVGCGVCASVCPSL-----ALELVGRTLT 107

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
              L+ +    E                +   G GEPL   + + + L           +
Sbjct: 108 VPELVAEARKDELFYDQSGGG-------VTFSG-GEPLMQPEFLLEVLE------ACGAA 153

Query: 214 KRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
                + T GF P   I RV     + L    H      R  L        +   +    
Sbjct: 154 GFHRAVDTCGFAPEETILRVARHTDLFLYDLKHMDPEAHR--LYTGVDNVLILSNLRRLD 211

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI---NLIPFNPWPGCEY-- 326
                    R+     ++ GINDSP +   L + +  +   +   NL+P++     +Y  
Sbjct: 212 E-----AGARLNIRVPLIPGINDSPENLDALGRFVASLN-HVAGLNLLPYHTAGRSKYPK 265

Query: 327 ----------LCSDQKDIVTFSECIKRSGYSSPI 350
                         +  +   +E ++R G    I
Sbjct: 266 WGMTYRLEETPPPTEHQVRVAAEALRRQGLEVTI 299


>gi|302339995|ref|YP_003805201.1| pyruvate formate-lyase activating enzyme [Spirochaeta smaragdinae
           DSM 11293]
 gi|301637180|gb|ADK82607.1| pyruvate formate-lyase activating enzyme [Spirochaeta smaragdinae
           DSM 11293]
          Length = 245

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 87/240 (36%), Gaps = 41/240 (17%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC-----YTGTQKLVRNLTAEEILLQV 151
            G    +ET  + +       + +Q GC L C +C     +  T      +TA EI+   
Sbjct: 5   TGRIHSLETCGMVDGPGIRFLIFTQ-GCPLRCLYCHNPDTWKRTGGKE--VTAHEIIE-- 59

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             AR              +                  EPL   D V ++L + + + G+ 
Sbjct: 60  -TARKYKNYLLASGGGITITGG---------------EPLFQADFV-QALLLEAKAAGI- 101

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAI-SLHAVSNDLRNILVPINRKYPLEMLIDAC 270
                  + TSGF P  AR        L +  + +    L   +  ++  Y L   ++  
Sbjct: 102 ----HTAVDTSGFAPPAARKAVLPHADLVLLDIKSAVPALFKKISGVSITYTLA-TLNEL 156

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328
           + +        +   +V++ G+ D P DA  L  +LKG P   K+ ++PF+     ++  
Sbjct: 157 KEW-----NVPVWIRHVVVPGLTDKPEDAEKLAHMLKGYPNIEKVEILPFHKMGEYKWEQ 211


>gi|163814895|ref|ZP_02206283.1| hypothetical protein COPEUT_01046 [Coprococcus eutactus ATCC 27759]
 gi|158449834|gb|EDP26829.1| hypothetical protein COPEUT_01046 [Coprococcus eutactus ATCC 27759]
          Length = 461

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 85/228 (37%), Gaps = 27/228 (11%)

Query: 107 YIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
            I  K R T    LC+     C+L C +C+ G  +   +             R+L+    
Sbjct: 81  IIDFKKRKTVVKALCLHIAHDCNLACRYCFAGEGEYKGD-------------RALMSLEV 127

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
             + ++ +V  S  R+   +   G GEPL N+D VKK++            K R TL+T+
Sbjct: 128 AKKSLDFLVANSGFRRNLEVDFFG-GEPLMNWDVVKKTVEYGRSLEEKYDKKFRFTLTTN 186

Query: 223 GFV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           G +    I      E   V+L+I      +D   +    N K   ++++   + +     
Sbjct: 187 GVLLNDEIMEFANREMANVVLSIDGRKEVHDY--MRPTRNGKGSYDVILSKFQEFAKKRA 244

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
            +             D   D L++  +  G   +I++ P    P   Y
Sbjct: 245 GKSYYVRGTYTHNNLDFSNDVLHMADL--GFD-QISVEPVVSLPDEPY 289


>gi|312128238|ref|YP_003993112.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778257|gb|ADQ07743.1| Radical SAM domain protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 453

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 80/240 (33%), Gaps = 25/240 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C+     C L C +C+  +                   R L+    G + I+ ++  S
Sbjct: 92  AMCLHVAHDCDLRCRYCFASSGSFK-------------QERKLMSFDVGKKAIDFLLQNS 138

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS---MGLSFSKRRITLSTSGFVPNIARV 231
             R+   +   G GEPL NFD VK  +  A           S    T +T+     I  +
Sbjct: 139 GSRQNLEVDFFG-GEPLLNFDVVKNIVEYARQEEKKYNKKISFTLTTNATNLSDDIIEYL 197

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            + +  V+L+       ND   I    N  Y    + D    +    N +          
Sbjct: 198 NQNMENVVLSHDGRPEVNDFMRIDRDGNGTYS--KITDNILRFIQKRNGKTYYVRGTFTA 255

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSS 348
              D  +D L+L  +  GI  +I++ P        +    S  + I    + +     ++
Sbjct: 256 KNLDFSKDVLHLYSL--GIK-EISIEPVVLDKSSPWAIRESHIERIKQEYDILAEEYINA 312


>gi|289808611|ref|ZP_06539240.1| ribosomal RNA large subunit methyltransferase N [Salmonella
          enterica subsp. enterica serovar Typhi str. AG3]
          Length = 48

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 52 GMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI 97
           M+DI++ +R  L +   I  PE+V+E+ S DGT KW +    + +
Sbjct: 3  EMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV 48


>gi|154482681|ref|ZP_02025129.1| hypothetical protein EUBVEN_00357 [Eubacterium ventriosum ATCC
           27560]
 gi|149736457|gb|EDM52343.1| hypothetical protein EUBVEN_00357 [Eubacterium ventriosum ATCC
           27560]
          Length = 444

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 67/195 (34%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E        R  +  F   +     ++ +
Sbjct: 82  ALCLHIAHDCNLACKYCFAEE---------GE-----YHGRRAMMSFEVGKKALDFLVAN 127

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
            G +++  V    GEPL N+D VK+ +         +  K R TL+T+G + N   +   
Sbjct: 128 SGSRVNLEVDFFGGEPLMNWDVVKQLVEYGRSLEESNHKKFRFTLTTNGVLLNDEIMEYL 187

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      ND   +      K   ++++   +      N           +
Sbjct: 188 NKEMSNVVLSLDGRKEVND--RMRPFRTGKGSYDLIVPKFQKLAESRNQSNYYVRGTFTR 245

Query: 291 GINDSPRDALNLIKI 305
              D   D  +   +
Sbjct: 246 DNLDFSEDVKHFADL 260


>gi|262066454|ref|ZP_06026066.1| Fe-S oxidoreductase [Fusobacterium periodonticum ATCC 33693]
 gi|291379881|gb|EFE87399.1| Fe-S oxidoreductase [Fusobacterium periodonticum ATCC 33693]
          Length = 284

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 86/237 (36%), Gaps = 38/237 (16%)

Query: 124 CSLTCSFC---YTGTQKLVRNL--TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           C+L C FC    T   +L R       EIL ++      +                    
Sbjct: 28  CNLNCIFCECGATKKIQLERQKFKNMNEILEEISAVLKDIKPDY---------------- 71

Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
              I   G GEP  + D  N+ +++       G      +I L T+  +     + +E+ 
Sbjct: 72  ---ITFSGSGEPTLSLDLGNISRAIKEDLKYQG------KICLITNSLLLADENLMKELE 122

Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              ++  +L+ ++ D+   +V  + +  +E +     +    +   +I  E  +L+ +ND
Sbjct: 123 YIDLIVPTLNTLTQDIFEKIVRPDYRTSVEEIRKGFINLNKSNYKGKIWIEIFILENVND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347
           S  + +N+   LK    + + I  N         +      + I    + ++ +G +
Sbjct: 183 SDENFVNIANFLKSEKIRYDKIQLNTIDRVGAERDLKAISFEKISRAKKILEENGLN 239


>gi|307266562|ref|ZP_07548094.1| Radical SAM domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918416|gb|EFN48658.1| Radical SAM domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 461

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 91/248 (36%), Gaps = 28/248 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++    C+L C +C+  T     +             R L+    G + I+ ++  S
Sbjct: 95  AMCLNVAHDCNLRCKYCFASTGDFKGS-------------RKLMDFETGKKAIDFLIKSS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231
             R+   +   G GEPL NFD VKK +    +    +    + T++T+  +     I   
Sbjct: 142 GKRRNIEVDFFG-GEPLLNFDVVKKLVEYGKEKAKENKKVIKFTITTNAVLLDDEKIKYF 200

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            E    V+L++      ND  N+ + ++     + ++   + +      +          
Sbjct: 201 NENFSNVVLSLDGRKEVND--NMRIRVDGSGTYDTIVPKIKKFVESRGKKEYYVRGTFTS 258

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ--KDIVTFSECIKRSGYSS 348
              D   D L++  +  G+  +I++ P       +Y   ++  + I+   + +       
Sbjct: 259 KNLDFANDVLHIADL--GVY-EISVEPVVEKEDKDYTLKEEHLERILNEYDRLAEEYIE- 314

Query: 349 PIRTPRGL 356
             R   G 
Sbjct: 315 --RYEEGR 320


>gi|153810179|ref|ZP_01962847.1| hypothetical protein RUMOBE_00560 [Ruminococcus obeum ATCC 29174]
 gi|149833358|gb|EDM88439.1| hypothetical protein RUMOBE_00560 [Ruminococcus obeum ATCC 29174]
          Length = 466

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ ++  S
Sbjct: 110 ALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSFEVGKKALDFLIANS 156

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             RK   +   G GEPL N+  VK  ++   +   L   K R TL+T+G + N   +   
Sbjct: 157 GSRKNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKLHNKKFRFTLTTNGVLLNDEVMEFC 215

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      +D           Y L  +I   + +    N  +         
Sbjct: 216 NKEMGNVVLSVDGRKEVHDYMRPFRKGAGSYDL--IIPKFQKFAESRNQDKYYVRGTFTH 273

Query: 291 GINDSPRDALNLIKI 305
              D  +D L+L  +
Sbjct: 274 HNLDFSKDVLHLADL 288


>gi|313114194|ref|ZP_07799746.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623603|gb|EFQ07006.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 487

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 24/221 (10%)

Query: 93  PARCIGGPVEIETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
            A  +  P   E +    K+R T    LC+     C+L CS+C+    +   +       
Sbjct: 78  EAGKLWTPDTYENMAFDFKNRNTVVKALCLHVAHTCNLNCSYCFASQGRYQGD------- 130

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
                 R+L+    G   ++ ++  S  R+   +   G GEPL NFD VKK ++   +  
Sbjct: 131 ------RALMSFEVGKRAMDFLIENSGTRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQE 183

Query: 209 GLSFSKRRITLSTSGFV---PNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLE 264
            +     R T++T+G +     I    +E   V+L++      ND              +
Sbjct: 184 KIHNKNFRFTMTTNGMLIDDDVIDFCNKECHNVVLSLDGRKEVND--RFRKDYAGHGSYD 241

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++   + +      +             D   D  ++  +
Sbjct: 242 TIVPKFQEFVKKRGDKNYYMRGTYTHYNTDFTNDIFHMADL 282


>gi|218283069|ref|ZP_03489164.1| hypothetical protein EUBIFOR_01750 [Eubacterium biforme DSM 3989]
 gi|218216138|gb|EEC89676.1| hypothetical protein EUBIFOR_01750 [Eubacterium biforme DSM 3989]
          Length = 464

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 26/198 (13%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L CS+C+    K   +             R+L+    G   ++ +V  S
Sbjct: 98  ALCLHIAHTCNLNCSYCFASQGKYHGD-------------RALMSFETGKRALDFLVENS 144

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV--PNIA 229
             R+   +   G GEPL NFD VK+ +          G +F   R TL+T+G +   ++ 
Sbjct: 145 GTRRNLEVDFFG-GEPLMNFDVVKQLVAYARSIEKEAGKNF---RFTLTTNGMLIDDDVI 200

Query: 230 RVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
                E   V+L++      +D     V  + K   + ++   +        +       
Sbjct: 201 EFANKEMSNVVLSLDGRKEVHD--RYRVDYSGKGSFDTIVPKFQKLVKAREGKNYYMRGT 258

Query: 288 MLKGINDSPRDALNLIKI 305
                 D  +D   ++ +
Sbjct: 259 FTHANPDFLKDVQQMLDL 276


>gi|323704620|ref|ZP_08116198.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536082|gb|EGB25855.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 453

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 22/196 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+                      R L+      + ++ +V  S
Sbjct: 95  ALCLHVSHDCNLRCEYCFAQKGDYN-------------TGRKLMSKEVAFKAVDYLVKNS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFV---PNIAR 230
            GR+   I   G GEPL NFD VK ++          +  K   T++T+G +     I  
Sbjct: 142 SGRRNIEIDFFG-GEPLLNFDVVKATVDYGRSLEDKFN-KKFYFTITTNGTLLDDEKIKF 199

Query: 231 VGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           + + +  V+++I      +D        N  Y  + ++   +      N +         
Sbjct: 200 LNKNMDNVVISIDGRKEIHDEIRHYASGNGSY--DKIVPLAKKLVEERNGKSYFIRGTFT 257

Query: 290 KGINDSPRDALNLIKI 305
           K   D  +D  +L  +
Sbjct: 258 KKNKDFSKDVFHLADL 273


>gi|160893377|ref|ZP_02074163.1| hypothetical protein CLOL250_00927 [Clostridium sp. L2-50]
 gi|156864952|gb|EDO58383.1| hypothetical protein CLOL250_00927 [Clostridium sp. L2-50]
          Length = 454

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 85/228 (37%), Gaps = 27/228 (11%)

Query: 107 YIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
            I  K R T    LC++    C+L C +C+ G  +   +             R L+    
Sbjct: 81  IIDFKKRKTVVKALCINIAHDCNLACRYCFAGEGEYKGD-------------RGLMPLDI 127

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
             + ++ +V  S  R    +   G GEPL N+D VK+++            K R TL+T+
Sbjct: 128 AKKSLDFLVANSGNRVNLEVDFFG-GEPLMNWDVVKETVRYGRSLEEKHNKKFRFTLTTN 186

Query: 223 GFV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           G +    +      E   V+L+I      +D   +    N K   ++L+   + +     
Sbjct: 187 GVLLNDEVMEFANKEMANVVLSIDGRKEIHDY--MRPTRNGKGSYDLLLPKFQEFAKKRA 244

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
            +             D  +D L++  +  G   +I++ P    P   Y
Sbjct: 245 GKSYYVRGTYTHNNLDFSKDVLHMADL--GFD-QISIEPVVSLPDEPY 289


>gi|27597164|dbj|BAC55153.1| putative Fe-S-cluster redox enzyme homologue [Halomonas sp. #593]
          Length = 45

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 5  KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG 46
          ++ +L+GM REE+E   L IG      + R +Q+ KWI+  G
Sbjct: 8  QRPNLLGMTREEMEAFFLSIG----EKKFRAAQVMKWIHQEG 45


>gi|225027423|ref|ZP_03716615.1| hypothetical protein EUBHAL_01679 [Eubacterium hallii DSM 3353]
 gi|224955250|gb|EEG36459.1| hypothetical protein EUBHAL_01679 [Eubacterium hallii DSM 3353]
          Length = 454

 Score = 58.7 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 76/216 (35%), Gaps = 23/216 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+    +   +             R L+    G   ++ +V  S
Sbjct: 92  ALCLHIAHDCNLACRYCFAEEGEYKGH-------------RELMSAKVGKAALDFLVANS 138

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
             R    +   G GEP  NF  VK+ +              R TL+T+G +    I    
Sbjct: 139 GNRHNLEVDFFG-GEPTMNFGVVKEVVEYGRSLEEKHNKHFRFTLTTNGVLLNDEIMEFA 197

Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      +D   +    N K   ++++     +    + ++         
Sbjct: 198 NKEMDNVVLSVDGRKEIHDY--MRPTRNGKPSYDLIMPKFIRFAESRHQQKYYVRGTFTN 255

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
              D  +D L+L  +  G   +I++ P    P   Y
Sbjct: 256 RNLDFSKDVLHLADL--GFE-QISMEPVVGQPEEPY 288


>gi|297544500|ref|YP_003676802.1| Radical SAM domain-containing protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842275|gb|ADH60791.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 461

 Score = 58.7 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 72/195 (36%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++    C+L C +C+  T     +             R L+    G + I+ ++  S
Sbjct: 95  AMCLNVAHDCNLRCKYCFASTGDFKGS-------------RKLMDFETGKKAIDFLIKSS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231
             R+   +   G GEPL NF+ VK+ +         +    + T++T+  +     I   
Sbjct: 142 GKRQNIEVDFFG-GEPLLNFEVVKQLVEYGKQKAKENKKTIKFTITTNAVLLDDEKIKYF 200

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            E    V+L++      ND  ++ V +N     + ++   + +      +          
Sbjct: 201 NENFSNVVLSLDGRKEVND--DMRVRVNGSGTYDTIVPKIKKFVESRGKKEYYVRGTFTA 258

Query: 291 GINDSPRDALNLIKI 305
              D   D L++  +
Sbjct: 259 KNLDFANDVLHIADL 273


>gi|317502037|ref|ZP_07960219.1| radical SAM domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331090447|ref|ZP_08339328.1| hypothetical protein HMPREF1025_02911 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896511|gb|EFV18600.1| radical SAM domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330401194|gb|EGG80787.1| hypothetical protein HMPREF1025_02911 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 467

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ ++  S
Sbjct: 107 ALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 153

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231
             R+   +   G GEPL N+  VK  ++   +   +     R T++T+G +    I    
Sbjct: 154 GKRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHDKHFRFTVTTNGVLLNDEIQEFV 212

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      ND   +    N K   ++++   +      N  +        +
Sbjct: 213 NKEMDNVVLSLDGRKEVNDK--MRPFRNGKGSYDLIVPKFQKLAESRNQEKYYIRGTFTR 270

Query: 291 GINDSPRDALNLIKI 305
              D   D L+   +
Sbjct: 271 NNLDFSNDVLHFADL 285


>gi|312623053|ref|YP_004024666.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203520|gb|ADQ46847.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 453

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 85/273 (31%), Gaps = 32/273 (11%)

Query: 86  RKWLLR----FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
            K L+     F          IE           +C+     C L C +C+  +      
Sbjct: 62  IKSLIEQGVLFSEDTYKDMNLIE---KRNPVIKAMCLHVAHDCDLRCRYCFASSGSFK-- 116

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
                        R L+    G + I+ ++  S  R+   +   G GEPL NFD VK  +
Sbjct: 117 -----------QERKLMSFDVGKKAIDFLLQNSGSRQNLEVDFFG-GEPLLNFDVVKNIV 164

Query: 202 SIASDS---MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPI 257
             A           S    T +T+     I  + + +  V+L+       ND   I    
Sbjct: 165 EYARHEENKYNKKISFTLTTNATNLSDDIIEYLNQNMENVVLSHDGRPEINDFMRIDRDG 224

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
           N  Y    + D    +    N +             D  +D L+L  +  GI  +I+  P
Sbjct: 225 NGTYN--KITDNILRFIQKRNGKTYYVRGTFTAKNLDFSKDVLHLYSL--GIK-EISDEP 279

Query: 318 FNPWPGCEY--LCSDQKDIVTFSECIKRSGYSS 348
                   +    S  + I    + +     ++
Sbjct: 280 VVLDKSSPWAIRESHIERIKEEYDILAEEYINA 312


>gi|300813209|ref|ZP_07093577.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|300512662|gb|EFK39794.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 449

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 101/290 (34%), Gaps = 39/290 (13%)

Query: 45  RGIRDFQGMSDISQEVRHLL---NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV 101
           + I DF+ ++        +L      F ++  E   +++      K+L+           
Sbjct: 32  KIIDDFKDLTRT-----EILSKYKDEFPLVQLEEAYDEV------KFLVDEEMLFTEDAK 80

Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
            ++ +Y P      +C++    C+L C +C+                      R L+   
Sbjct: 81  YLKPMYNPANIIKAMCLNVAHDCNLRCKYCFASQGDFKG-------------KRLLMDLQ 127

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
            G + ++ ++  S  R+   +   G GEPL NF+ VKK +              R T++T
Sbjct: 128 TGKDALDFLIKSSGYRRNLEVDFFG-GEPLMNFEVVKKLVEYGRIQEKKYNKHFRFTITT 186

Query: 222 SGFV---PNIARVGEEIG-VMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           +G       I  + E +   +L++     V++ +R  +   N K   ++++   +     
Sbjct: 187 NGTYLTDDKIDFINENMDNCVLSLDGRKCVNDYMRPTI---NGKGSFDIIVPKFKKLISK 243

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
              +             D   D   L++  K    K ++ P        Y
Sbjct: 244 RGDKDYFIRGTFTNENLDFSED---LMEFYKQGFKKTSIEPVVTDEKEPY 290


>gi|303238883|ref|ZP_07325414.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302593516|gb|EFL63233.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 448

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 81/218 (37%), Gaps = 27/218 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            LC+     C+L C +C+  T      R++ + E+               G + I+ ++ 
Sbjct: 93  ALCLHISHDCNLRCKYCFASTGDFGGQRSMMSSEV---------------GKKAIDFIIK 137

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIAR 230
            S  RK   + + G GEPL NF+ VK+ ++ A      +    R TL+T+  +   +I  
Sbjct: 138 ESGSRKNLEVDLFG-GEPLMNFEVVKEIVAYAKSKEKEAGKNFRFTLTTNAILLNEDIKN 196

Query: 231 VGEEI--GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
              E    V+L+I      ND     V     Y    ++   +         R       
Sbjct: 197 YVNENMQNVVLSIDGRKEVNDKMRYRVDGTGCYS--DIMPKIKDMADSRGQDRYYVRGTF 254

Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
            +   D  +D L+L    +G   +I++ P        Y
Sbjct: 255 TRENLDFSKDVLHLAD--EGFK-QISVEPVVAGKDSGY 289


>gi|210616298|ref|ZP_03291026.1| hypothetical protein CLONEX_03247 [Clostridium nexile DSM 1787]
 gi|210149853|gb|EEA80862.1| hypothetical protein CLONEX_03247 [Clostridium nexile DSM 1787]
          Length = 467

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ ++  S
Sbjct: 107 ALCIHIAHDCNLACQYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 153

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231
             RK   +   G GEPL N+  VK  ++   +   L     R TL+T+G +    +    
Sbjct: 154 GNRKNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKLHDKHFRFTLTTNGVLLNDEVKEFV 212

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      ND   +    N K   ++++   +      N  +        +
Sbjct: 213 NKEMDNVVLSLDGRKEVNDK--MRPFRNGKGSYDLIVPKFQKLAESRNQEKYYIRGTFTR 270

Query: 291 GINDSPRDALNLIKI 305
              D  +D L+   +
Sbjct: 271 DNLDFSKDVLHFADL 285


>gi|289578219|ref|YP_003476846.1| radical SAM protein [Thermoanaerobacter italicus Ab9]
 gi|289527932|gb|ADD02284.1| Radical SAM domain protein [Thermoanaerobacter italicus Ab9]
          Length = 461

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 71/195 (36%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++    C+L C +C+  T                   R L+    G + I+ ++  S
Sbjct: 95  AMCLNVAHDCNLRCKYCFASTGDFK-------------SGRKLMDFETGKKAIDFLIKSS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231
             R+   +   G GEPL NF  VK+ +    +    +    + T++T+  +     I   
Sbjct: 142 GKRRNIEVDFFG-GEPLLNFKVVKQLVEYGKEKAKENKKVIKFTITTNAVLLDDEKIKYF 200

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            E    V+L++      ND   I V  N  Y  + ++   + +      +          
Sbjct: 201 NENFSNVVLSLDGRKEVNDSMRIRVDGNGSY--DTIVPKIKKFVESRGKKEYYVRGTFTA 258

Query: 291 GINDSPRDALNLIKI 305
              D  +D L++  +
Sbjct: 259 KNLDFTKDVLHIADL 273


>gi|210623789|ref|ZP_03294049.1| hypothetical protein CLOHIR_02000 [Clostridium hiranonis DSM 13275]
 gi|210153371|gb|EEA84377.1| hypothetical protein CLOHIR_02000 [Clostridium hiranonis DSM 13275]
          Length = 465

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 92/255 (36%), Gaps = 38/255 (14%)

Query: 62  HLLNQHFSIIYPEIVDEKIS---CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118
            LL   F+    E   ++I+    +G    LL         P  +      E     LC+
Sbjct: 52  ELLKDEFTKEQVEEAWDEIANLEEEG----LLYTEDNYQFHPAFV----HREPVVKALCL 103

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           +    C+L C +C+                        L+    G   ++ +V  S  R+
Sbjct: 104 NVAHDCNLKCKYCFAKQGNFGG-------------KPELMSFEVGKRALDFLVANSGSRR 150

Query: 179 ISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV---PNIARVG 232
             +I   G GEPL NF+ VK+ +          G +    R T++T+G +     I  + 
Sbjct: 151 NLDIDFFG-GEPLMNFEVVKQLVEYGRSIEKEHGKNM---RFTITTNGLLLNDEIIDYIN 206

Query: 233 EEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           E +  V+L++      ND  N+ + IN K   ++++   +         +  +       
Sbjct: 207 ENMHNVVLSLDGRKAVND--NMRMTINDKGSYDVIVPKMQKLVEKRPKDKYYYVRGTFTR 264

Query: 292 IN-DSPRDALNLIKI 305
            N D  +D L+   +
Sbjct: 265 ENLDFSKDILHFRDL 279


>gi|260891959|ref|YP_003238056.1| Radical SAM domain protein [Ammonifex degensii KC4]
 gi|260864100|gb|ACX51206.1| Radical SAM domain protein [Ammonifex degensii KC4]
          Length = 452

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 84/230 (36%), Gaps = 36/230 (15%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P  +  +LC+     C+L C++C+ G                   A  ++ +      ++
Sbjct: 77  PSFAPKSLCLMVAQACNLRCNYCFAGEGD--------------YGAAGIMSEEVARSAVD 122

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFV 225
            ++  +  R+   I   G GEPL NF  V  ++    +    +G   S   +T +     
Sbjct: 123 FLLESAGPRRTVEIDFFG-GEPLLNFPVVVATVRYGKERARKLGKEISFT-LTTNAVLLD 180

Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP-----LEMLIDACRH-YPGLSNA 279
               R   E  V L +SL     D R  +    R++P        ++D  R  Y   +  
Sbjct: 181 EEKERFLLEEEVNLVLSL-----DGRPEVHDRFRRFPDGTGSYRQVLDNIRRCYHNWAFR 235

Query: 280 RRITFEYV--MLKGIN-DSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
            R ++ Y+      +N D  RD  +L    +G    I+L P    P   Y
Sbjct: 236 PRSSYCYLRGTFTRMNLDFSRDFKHLAD--QGFR-HISLEPVVAPPSAPY 282


>gi|167770639|ref|ZP_02442692.1| hypothetical protein ANACOL_01985 [Anaerotruncus colihominis DSM
           17241]
 gi|167667234|gb|EDS11364.1| hypothetical protein ANACOL_01985 [Anaerotruncus colihominis DSM
           17241]
          Length = 457

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 80/223 (35%), Gaps = 22/223 (9%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C+     C+L C +C+  T          E +      R L+    G   I+ ++  S
Sbjct: 98  AMCLHIAHDCNLRCKYCFADT---------GEYMGH----RELMSPETGRAAIDYLIDHS 144

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
            GR    + + G GEPL NF+ V++ +  A           R T++T+G + +  ++   
Sbjct: 145 AGRHNLEVDLFG-GEPLMNFETVREVVRYARSLEKKHGKLFRFTITTNGILLDDDKIDFI 203

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYP-LEMLIDACRHYPGLSNARRITFEYVML 289
             E   V+L+I      ND     V     Y  +                 +        
Sbjct: 204 NQEMSNVVLSIDGRREVNDRVRSRVDGTGSYDRIVPNFQKLVRLRKQGPYNQYYARGTFT 263

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
           K   D   D L+L  +  G   ++++ P    P   Y  +++ 
Sbjct: 264 KYNKDFAEDVLHLSGL--GFD-QVSVEPVVSDPTMPYALTEED 303


>gi|304440494|ref|ZP_07400381.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370972|gb|EFM24591.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 451

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 81/221 (36%), Gaps = 28/221 (12%)

Query: 86  RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145
            K L +        P  ++ VY P+     +C+     C+L C +C+             
Sbjct: 65  IKELEKEGMLFTEDPRLMKAVYNPQNIIKAMCLHVSHDCNLRCKYCFASQGDFH-----G 119

Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           E        R L+    G   I+ ++  S  R+   +   G GEPL NF+ VKK +    
Sbjct: 120 E--------RLLMDLETGKAAIDFLLENSGNRRNLEVDFFG-GEPLMNFNLVKKLVEYGD 170

Query: 206 D---SMGLSFSKRRITLSTSGFV--PNIARVGEE--IGVMLAISLH-AVSNDLRNILVPI 257
           +     G +F   R TL+T+G +    I     E    V+L+I     +++D+R  +   
Sbjct: 171 EREKEYGKNF---RWTLTTNGMLLNDEINEFLNEHMSNVVLSIDGRKKINDDMRPTI--- 224

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           N K   ++++   +        +             D   D
Sbjct: 225 NGKGSYDIIVPKFKKLIEGRGDKDYYIRGTFTNKNLDFGED 265


>gi|294783714|ref|ZP_06749038.1| Fe-S oxidoreductase [Fusobacterium sp. 1_1_41FAA]
 gi|294480592|gb|EFG28369.1| Fe-S oxidoreductase [Fusobacterium sp. 1_1_41FAA]
          Length = 284

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 85/235 (36%), Gaps = 34/235 (14%)

Query: 124 CSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           C+L C FC    T   +L R                        E +E +       +  
Sbjct: 28  CNLNCIFCECGATKKIQLER-----------------KRFKDMNEILEEISTVLKDIQPD 70

Query: 181 NIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV- 237
            I   G GEP  + D  N+ K++       G      +I L T+  +     + EE+   
Sbjct: 71  YITFSGSGEPTLSLDLGNISKAIKEDLKYQG------KICLITNSLLLADENLMEELEYI 124

Query: 238 -MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            ++  +L+ ++ D+   +V  + +  +E +     +        +I  E  +L+ INDS 
Sbjct: 125 DLIVPTLNTLTQDIFEKIVRPDYRTSVEEIRKGFINLNKSKYKGKIWIEIFILENINDSD 184

Query: 297 RDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347
           ++ +++   LK    + + I  N         +      + I    + ++ +G +
Sbjct: 185 KNFVDIANFLKSENIRYDKIQLNTIDRVGAERDLKAISFEKISRAKKILEENGLN 239


>gi|167758792|ref|ZP_02430919.1| hypothetical protein CLOSCI_01134 [Clostridium scindens ATCC 35704]
 gi|167663532|gb|EDS07662.1| hypothetical protein CLOSCI_01134 [Clostridium scindens ATCC 35704]
          Length = 473

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 20/207 (9%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE V   +     LC+     C+L C +C+             E   +    R+L+    
Sbjct: 104 IEEVKKRKTVVKALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSFEV 150

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
           G + ++ ++  S  R    +   G GEPL N+  VK  ++   +   +     R T++T+
Sbjct: 151 GKKALDFLIANSGNRHNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHDKHFRFTITTN 209

Query: 223 GFV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           G +    +      E   V+L++      ND   +    N K   ++++   +      N
Sbjct: 210 GVLLNDEVQEFVNKEMDNVVLSLDGRKDVND--RMRPFRNGKGSYDLIVPKFQKLAKSRN 267

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKI 305
             R        +   D   D L+   +
Sbjct: 268 QERYYVRGTFTRDNLDFSNDILHFADL 294


>gi|256828649|ref|YP_003157377.1| nitrogenase cofactor biosynthesis protein NifB [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577825|gb|ACU88961.1| nitrogenase cofactor biosynthesis protein NifB [Desulfomicrobium
           baculatum DSM 4028]
          Length = 418

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 84/243 (34%), Gaps = 44/243 (18%)

Query: 123 GCSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           GC++ C++C          R      IL             P         +     +I+
Sbjct: 31  GCNIQCNYCNRKYDCVNESRPGVTSAIL------------PPDRAVEYLDEVLKKEPRIT 78

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVM 238
            + + G G+P+       +++   +             LS++G     ++ R+ E     
Sbjct: 79  VVGIAGPGDPMAEAKRTLETIERINAKY----PNMLYCLSSNGLALPEHVDRLAELGVTH 134

Query: 239 LAISLHAVSNDLRNILVPINR------------KYPLEMLIDACRHYPGLSNARRITFEY 286
           + ++++AV  ++   +    R            K  LE  +++ R     +    +    
Sbjct: 135 VTVTMNAVDPEIGAKIYSWVRVGKVVYRGVEGAKILLERQLESIR--LLKAKGITVKVNS 192

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTFSECIK 342
           +++ G+ND     + + K+   + A I NLIP +P     +       ++ I      ++
Sbjct: 193 IIIPGVNDH--HLIEVAKVAASLGADIQNLIPLHPTADTPFAGVEEPTKELIHE----LR 246

Query: 343 RSG 345
             G
Sbjct: 247 AKG 249


>gi|323485627|ref|ZP_08090966.1| hypothetical protein HMPREF9474_02717 [Clostridium symbiosum
           WAL-14163]
 gi|323401038|gb|EGA93397.1| hypothetical protein HMPREF9474_02717 [Clostridium symbiosum
           WAL-14163]
          Length = 465

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 85/227 (37%), Gaps = 27/227 (11%)

Query: 108 IPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           +  K R T    LC+     C+L C +C+             E   +    R+L+    G
Sbjct: 96  MDFKKRQTVVKALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEVG 142

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
            + ++ ++  S  R+   +   G GEPL N++ VK+ +        L   K R TL+T+G
Sbjct: 143 KKALDFLIANSGARRNLEVDFFG-GEPLMNWEVVKQLVEYGRSQEELHNKKFRFTLTTNG 201

Query: 224 FV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
            +    I      E   V+L++      ND   +    N +   ++++   + +      
Sbjct: 202 VLLNDEIMEFSNREMSNVVLSLDGRQDVND--RMRPFRNGRGSYDLIVPKFQKFAKERGD 259

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           R         +   D   D L+   +  G   K+++ P    P   Y
Sbjct: 260 RDYFVRGTFTRNNLDFADDVLHFADL--GFE-KMSVEPVVASPEEPY 303


>gi|295100532|emb|CBK98077.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Faecalibacterium
           prausnitzii L2-6]
          Length = 483

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 71/195 (36%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L CS+C+    +   +             R+L+    G   ++ ++  S
Sbjct: 100 ALCLHVAHTCNLNCSYCFASQGRYQGD-------------RALMSFEVGKRAMDFLIENS 146

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231
             R+   +   G GEPL NFD VKK ++   +   +     R T++T+G +     I   
Sbjct: 147 GTRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQEKIHNKNFRFTMTTNGMLIDDDVIDFC 205

Query: 232 GEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            +E   V+L++      +D          +   + ++   + +      +          
Sbjct: 206 NKECHNVVLSLDGRKEVHD--RFRKDYAGRGSYDAIVPKFQEFVKKRGDKNYYMRGTYTH 263

Query: 291 GINDSPRDALNLIKI 305
              D   D  ++  +
Sbjct: 264 YNTDFTNDIFHMADL 278


>gi|323691701|ref|ZP_08105962.1| radical SAM domain-containing protein [Clostridium symbiosum
           WAL-14673]
 gi|323504245|gb|EGB20046.1| radical SAM domain-containing protein [Clostridium symbiosum
           WAL-14673]
          Length = 465

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 85/227 (37%), Gaps = 27/227 (11%)

Query: 108 IPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           +  K R T    LC+     C+L C +C+             E   +    R+L+    G
Sbjct: 96  MDFKKRQTVVKALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEVG 142

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
            + ++ ++  S  R+   +   G GEPL N++ VK+ +        L   K R TL+T+G
Sbjct: 143 KKALDFLIANSGARRNLEVDFFG-GEPLMNWEVVKQLVEYGRSQEELHNKKFRFTLTTNG 201

Query: 224 FV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
            +    I      E   V+L++      ND   +    N +   ++++   + +      
Sbjct: 202 VLLNDEIMEFSNREMSNVVLSLDGRQDVND--RMRPFRNGRGSYDLIVPKFQKFAKERGD 259

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           R         +   D   D L+   +  G   K+++ P    P   Y
Sbjct: 260 RDYFVRGTFTRNNLDFADDVLHFADL--GFE-KMSVEPVVASPEEPY 303


>gi|187776896|ref|ZP_02993369.1| hypothetical protein CLOSPO_00435 [Clostridium sporogenes ATCC
           15579]
 gi|187775555|gb|EDU39357.1| hypothetical protein CLOSPO_00435 [Clostridium sporogenes ATCC
           15579]
          Length = 300

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 92/274 (33%), Gaps = 53/274 (19%)

Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151
            +  + R T C      C                  C+FC   T     N  A E + + 
Sbjct: 48  IMFFEERCTACGICVKRCPQKVITMKNNIPVVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L ++ ++ +    E                +   G GEP+ + D     ++   +    +
Sbjct: 106 LTSQEIIKEIIKDEVFYEESGGG-------VTFSG-GEPMLHAD----FINGILEE--CN 151

Query: 212 FSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
                 T+ TSG+V      +V +++ + L   L +++N++      +     +   ++ 
Sbjct: 152 VRGIHTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLEL 209

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYLC 328
              Y        I     ++  +ND+  +    IK +  +   ++NL+P++     +Y  
Sbjct: 210 LSKY-----GHNIYLRIPIINDVNDNNENIDETIKFISKLHLIQVNLLPYHKMGMDKYKR 264

Query: 329 ------------SDQKDIVTFSECIKRSGYSSPI 350
                          + +   +E  K++G    I
Sbjct: 265 LKMEYKLTGEEKPSDEKMNKIAEKFKKAGIKVKI 298


>gi|302671353|ref|YP_003831313.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
           B316]
 gi|302395826|gb|ADL34731.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus
           B316]
          Length = 479

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 73/200 (36%), Gaps = 30/200 (15%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+             E   +    R+L+ +  G   ++ ++  S
Sbjct: 120 ALCLNIAHDCNLRCKYCFADE---------GEYHGR----RALMTEEVGKAALDFLIKNS 166

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-----RITLSTSGFVPNIA 229
             R+   +   G GEPL N++ VKK +       G S  K      R T++T+G + N  
Sbjct: 167 GNRRNLEVDFFG-GEPLMNWEVVKKIVE-----YGRSIEKEHNKNFRFTITTNGTLLNDE 220

Query: 230 RV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
            +     E   ++L+I      ND   +      +   + ++   +      +  R    
Sbjct: 221 ILEYVNKEMGNIVLSIDGRKEVNDF--MRPRKGGQGCYDDIVPKFQKVAESRHQLRYFVR 278

Query: 286 YVMLKGINDSPRDALNLIKI 305
                   D   D  +L  +
Sbjct: 279 GTFTHNNLDFSEDVKHLADL 298


>gi|310658132|ref|YP_003935853.1| radical sam family protein [Clostridium sticklandii DSM 519]
 gi|308824910|emb|CBH20948.1| putative radical SAM family protein [Clostridium sticklandii]
          Length = 459

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 28/199 (14%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C+     C+L C +C+                     A+S++    G + +E +V  S
Sbjct: 92  AMCLHIAHDCNLKCKYCFASQGDFGG-------------AKSIMSFEVGKKALEYLVDNS 138

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSKRRITLSTSGFV--PNIA 229
             RK   +   G GEPL NF+ VK+ +      +   G +F   R T++T+G +    I 
Sbjct: 139 GSRKNLEVDFFG-GEPLMNFEVVKQLVEYGNELAKEKGKNF---RFTITTNGVLLDDEII 194

Query: 230 RVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
               E    + +SL    ++++D+R  L   N K   ++++   +        +      
Sbjct: 195 DYVNEHMHNVVLSLDGRKSINDDMRPTL---NDKGSYDIIVPKFQKLIEKRKDKYYYVRG 251

Query: 287 VMLKGINDSPRDALNLIKI 305
              +   D  +D L+   +
Sbjct: 252 TFTRDNMDFSKDVLHFKDL 270


>gi|238917316|ref|YP_002930833.1| hypothetical protein EUBELI_01391 [Eubacterium eligens ATCC 27750]
 gi|238872676|gb|ACR72386.1| Hypothetical protein EUBELI_01391 [Eubacterium eligens ATCC 27750]
          Length = 453

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 76/220 (34%), Gaps = 29/220 (13%)

Query: 98  GGPVEIETVYIPEKSR--------GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
            G +  E +Y P              LC+     C+L C +C+             E   
Sbjct: 69  AGQLFTEDIYEPYIDNFKDRPTVVKALCLHIAHDCNLACKYCFAEE---------GEYHG 119

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
           +    R+L+    G + ++ +V  S  RK   +   G GEP  NF+ VK+ +        
Sbjct: 120 R----RALMSYEVGKKALDFLVANSGSRKNLEVDFFG-GEPTMNFEVVKQLVEYGRSIEE 174

Query: 210 LSFSKRRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDL-RNILVPINRKYPLE 264
            +  K R TL+T+G + N   +     E   ++L+I      NDL R         Y + 
Sbjct: 175 ANNKKFRFTLTTNGILLNDEILDFANKEMSNIVLSIDGRKEINDLMRPTRNNHGSSYDI- 233

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            ++   +      N               D   D L+L  
Sbjct: 234 -IMPKFKKVAESRNQMNYYVRGTFTHNNLDFSEDVLHLAD 272


>gi|166031166|ref|ZP_02233995.1| hypothetical protein DORFOR_00852 [Dorea formicigenerans ATCC
           27755]
 gi|166029013|gb|EDR47770.1| hypothetical protein DORFOR_00852 [Dorea formicigenerans ATCC
           27755]
          Length = 464

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 24/222 (10%)

Query: 92  FPARCIGGPVEIETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
                +    E E +    K R T    LC+     C+L C +C+             E 
Sbjct: 80  TEDGKLFTKDEFEYLVPIVKKRKTVVKALCLHIAHDCNLACRYCFAEE---------GEY 130

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
             +    R+L+    G + ++ ++  S  R+   +   G GEPL N+  VK  ++   + 
Sbjct: 131 HGR----RALMSYEVGKKALDFLIANSGSRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQ 185

Query: 208 MGLSFSKRRITLSTSGFV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263
             L     R T++T+G +    I      E   V+L++      ND   +    N K   
Sbjct: 186 EKLHDKNFRFTVTTNGVLLNDEIQEFVNKEMDNVVLSLDGRKEINDK--MRPFRNGKGSY 243

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           ++++   +      N  +        +   D   D L+   +
Sbjct: 244 DLIVPKFQKLAESRNQEKYYIRGTFTRNNLDFSNDILHFADL 285


>gi|296134437|ref|YP_003641684.1| Radical SAM domain protein [Thermincola sp. JR]
 gi|296033015|gb|ADG83783.1| Radical SAM domain protein [Thermincola potens JR]
          Length = 461

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 85/230 (36%), Gaps = 22/230 (9%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           +LC+     C+L C +C+ GT          E        + L+    G   I+ +V  S
Sbjct: 99  SLCLHVAHDCNLRCKYCFAGTGHF-----GGE--------KGLMPFEVGKAAIDFLVQSS 145

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARV 231
             RK   I   G GEPL N D VK+ +    +       + + TL+T+        I  +
Sbjct: 146 QRRKHCEIDFFG-GEPLLNMDVVKQIVHYGREQGAKHDKEFKFTLTTNAVRLDAEIINYL 204

Query: 232 GE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            + +I V+L++      ND R  L P   K     +    +      +           +
Sbjct: 205 NDNDIAVVLSLDGRPEVND-RMRLTP-AGKGSYHTITHKIKEMVQSRHNENYYVRGTFTR 262

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSEC 340
              D   D L+L+  L G    +++ P       +Y   ++   V F+E 
Sbjct: 263 FNLDFAADVLHLVDDL-GFK-HVSVEPVVAGAENDYAFREEDLPVLFAEY 310


>gi|114563644|ref|YP_751157.1| pyruvate formate lyase-activating enzyme 1 [Shewanella
           frigidimarina NCIMB 400]
 gi|114334937|gb|ABI72319.1| pyruvate formate-lyase activating enzyme [Shewanella frigidimarina
           NCIMB 400]
          Length = 245

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 56/250 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         ++ +EI+ QV+  +      P  E   G +  S G 
Sbjct: 28  GCLMRCQYCHNRDTWDLDGGKE--VSVDEIMSQVISYQ------PFLEASGGGITASGGE 79

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            I     +           + K+      S G         L T+GFV    P I  + +
Sbjct: 80  AILQAQFVS---------ELFKACK----SQG-----VHTCLDTNGFVRKYEPVIDELLD 121

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              ++L + +  + +     L  ++    L+        Y    N  +    YV++ G  
Sbjct: 122 NTDLVL-LDIKQMDDAKHIELTKVSNHRTLQ-----FAQYLATRN-IKTWIRYVVVAGFT 174

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           +    A+ L + +K +    K+ L+P++P    ++                 + +    +
Sbjct: 175 EDVESAIALAEFIKPMSNVEKVELLPYHPLGEHKWQAFGETYTLADISPPSTEIMQRIQQ 234

Query: 340 CIKRSGYSSP 349
                G ++ 
Sbjct: 235 VFVDRGINAT 244


>gi|323706427|ref|ZP_08117989.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534212|gb|EGB24001.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 459

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 77/207 (37%), Gaps = 21/207 (10%)

Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           +IE V   +     +C++    C+L CS+C+  T                   R L+   
Sbjct: 83  DIE-VSRKDSVIKAICLNVAHDCNLRCSYCFASTGDFKG-------------GRKLMPYE 128

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
            G + I+ ++  S  RKI  +   G GEPL NFD VKK +    +         + T++T
Sbjct: 129 VGKKAIDFLIKNSGNRKIVEVDFFG-GEPLLNFDVVKKLVDYGREEAKKYGKTIKYTITT 187

Query: 222 SGFVPNIARVG----EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
           +G + +  +          V+L++      ND     +  +  Y  +++    +++    
Sbjct: 188 NGVLLDEEKATYINENFSNVVLSLDGRKEINDAMRKRIDGSGSY--DVIFPKIKNFVLKR 245

Query: 278 NARRITFEYVMLKGINDSPRDALNLIK 304
             +             D   D L+L  
Sbjct: 246 GNKEHYVRGTFTAKNLDFSEDVLHLAD 272


>gi|167040100|ref|YP_001663085.1| radical SAM domain-containing protein [Thermoanaerobacter sp. X514]
 gi|300914184|ref|ZP_07131500.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
 gi|307724580|ref|YP_003904331.1| Radical SAM domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166854340|gb|ABY92749.1| Radical SAM domain protein [Thermoanaerobacter sp. X514]
 gi|300889119|gb|EFK84265.1| Radical SAM domain protein [Thermoanaerobacter sp. X561]
 gi|307581641|gb|ADN55040.1| Radical SAM domain protein [Thermoanaerobacter sp. X513]
          Length = 461

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++    C+L C +C+  T     +             R L+    G + I+ ++  S
Sbjct: 95  AMCLNVAHDCNLRCKYCFASTGDFKGS-------------RKLMDFETGKKAIDFLIKSS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231
             R+   +   G GEPL NF+ VK+ +    +    +    + T++T+  +     I   
Sbjct: 142 GKRRNIEVDFFG-GEPLLNFEVVKRLVEYGKEKAKENKKVIKFTITTNAVLLDDEKIKYF 200

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            E    V+L++      ND  ++ + ++     + ++   + +      +          
Sbjct: 201 NENFSNVVLSLDGRKEVND--SMRIRVDGSGSYDTIVPKIKKFVESRGKKEYYVRGTFTA 258

Query: 291 GINDSPRDALNLIKI 305
              D   D L++  +
Sbjct: 259 KNLDFANDVLHIADL 273


>gi|304317007|ref|YP_003852152.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778509|gb|ADL69068.1| Radical SAM domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 454

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 86/235 (36%), Gaps = 25/235 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++    C+L CS+C+  T                   R L+    G + I+ ++  S
Sbjct: 95  AICLNVAHDCNLRCSYCFASTGDFKG-------------GRKLMSYEVGKKAIDFLIKNS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-- 232
             RKI  +   G GEPL NF+ VKK +              + T++T+G + +  +    
Sbjct: 142 GNRKIVEVDFFG-GEPLLNFEVVKKIVEYGRQEAKKHGKTIKYTITTNGVLLDDEKASYI 200

Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
                 V+L++      ND     +  +  Y  +++    +++      +          
Sbjct: 201 NENFSNVVLSLDGRKEINDGMRKRIDGSGSY--DVIAPKIKNFVSKRGNKEHYVRGTFTA 258

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKR 343
              D   D L+L  +  GI  +I++ P       +Y       + I+   + +  
Sbjct: 259 KNLDFTNDVLHLADM--GIK-EISVEPVVEKEDTDYSIKKEHMERILKEYDRLTE 310


>gi|121535846|ref|ZP_01667645.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
 gi|121305561|gb|EAX46504.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1]
          Length = 457

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 71/196 (36%), Gaps = 22/196 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           +LC+     C+L C +C+ GT      R L  +E+  Q +               E ++ 
Sbjct: 95  SLCLHVAHDCNLRCRYCFAGTGDFGHDRGLMTKEVAEQAV---------------EFLIA 139

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIAR 230
            S  R+   I   G GEPL N + V+ ++         +    ++TL+T+  +    I  
Sbjct: 140 SSGPRRHCEIDFFG-GEPLLNMEVVRHTVDYVRRRAAETGKIFKLTLTTNAVLLDDAIIN 198

Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPIN-RKYPLEMLIDACRHYPGLSNARRITFEYVML 289
              E  + L +SL     ++ + + P    +   + ++   +      N +         
Sbjct: 199 YLNEHNISLVLSLDG-RREVHDRMRPDALGRGSYDEVVANIKRAVASRNGQNYYVRGTFT 257

Query: 290 KGINDSPRDALNLIKI 305
               D   D L +  +
Sbjct: 258 AYNIDFAADVLAMADL 273


>gi|257438968|ref|ZP_05614723.1| radical SAM domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257198553|gb|EEU96837.1| radical SAM domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 487

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 24/221 (10%)

Query: 93  PARCIGGPVEIETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
            +  +  P   E +    K+R T    LC+     C+L CS+C+    +        E  
Sbjct: 78  ESGKLWSPDTYEDLAFDFKNRNTVVKALCLHVAHTCNLNCSYCFASQGRYQ-----GE-- 130

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
                 R+L+    G   ++ ++  S  R+   +   G GEPL NFD VKK ++   +  
Sbjct: 131 ------RALMSFEVGKRAMDFLIENSGSRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQE 183

Query: 209 GLSFSKRRITLSTSGFV---PNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLE 264
            +     R T++T+G +     I    +E   V+L++      +D              +
Sbjct: 184 KIHNKNFRFTMTTNGMLIDDDVIDFCNKECHNVVLSLDGRKEVHD--RFRKDYAGHGSYD 241

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
            ++   + +      +             D   D  ++  +
Sbjct: 242 TIVPKFQEFVKKRGDKGYYMRGTFTHYNTDFTNDIFHMADL 282


>gi|227500369|ref|ZP_03930431.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
           tetradius ATCC 35098]
 gi|227217432|gb|EEI82751.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
           tetradius ATCC 35098]
          Length = 239

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 40/214 (18%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC L C FC+   T +    R++T EEI+ +    +    +  G                
Sbjct: 26  GCPLRCVFCHNPDTQSPNYGRDITIEEIVDRAKRMKPYYKNTGG---------------- 69

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGV 237
              V +  GEP+ +   +   +               +T+ TSG         + ++  +
Sbjct: 70  ---VTISGGEPMNDGKFLVDLIDALHKEN------IHVTVDTSGIGDSKYYEEIAQKADL 120

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            L + +     +    +         +  +     Y       R+   +VM+  + D+  
Sbjct: 121 FL-LDIKHYDPEKFERITKA------KQDLLVKFMYQISKTNTRVWIRHVMMPQVTDTRE 173

Query: 298 DALNLIKILKGIPA---KINLIPFNPWPGCEYLC 328
           D   L++ +K +     KI ++P++     +Y  
Sbjct: 174 DMERLVEFIKPLKKNIDKIEILPYHTLGVEKYKK 207


>gi|164687526|ref|ZP_02211554.1| hypothetical protein CLOBAR_01167 [Clostridium bartlettii DSM
           16795]
 gi|164603300|gb|EDQ96765.1| hypothetical protein CLOBAR_01167 [Clostridium bartlettii DSM
           16795]
          Length = 449

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 27/204 (13%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
            +K    LC+     C+L C +C+                     A+ ++    G   I+
Sbjct: 81  RKKVVKALCLHVSHDCNLRCKYCFASQGDFGG-------------AKEIMNFEVGKAAID 127

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSKRRITLSTSGFV 225
            ++  S  R+   I   G GEPL NF+ VK+ +        + G +    R T++T+G +
Sbjct: 128 YLIANSGNRRNLEIDFFG-GEPLMNFEVVKQLVEYGRKVEKTRGKNI---RFTITTNGVL 183

Query: 226 ---PNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
                I  + E +  V+L++      ND  N+    N K   +++    +         +
Sbjct: 184 LDDEKIKYINENMHNVVLSLDGRKEVND--NMRPTANNKGSYDIIAPKFKKLVSERPKDK 241

Query: 282 ITF-EYVMLKGINDSPRDALNLIK 304
             +      +   D   D L+   
Sbjct: 242 YYYIRGTFTRDNLDFSEDVLHFAN 265


>gi|282882974|ref|ZP_06291578.1| radical SAM domain protein [Peptoniphilus lacrimalis 315-B]
 gi|281297181|gb|EFA89673.1| radical SAM domain protein [Peptoniphilus lacrimalis 315-B]
          Length = 449

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 102/290 (35%), Gaps = 39/290 (13%)

Query: 45  RGIRDFQGMSDISQEVRHLLN---QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV 101
           + I DF+ ++        +L+     F ++  E   +++      K+L+           
Sbjct: 32  KIIDDFKDLTRT-----EILSKYRDEFPLVQLEEAYDEV------KFLVDEEMLFTEDAK 80

Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
            ++ +Y P      +C++    C+L C +C+                      R L+   
Sbjct: 81  YLKPMYNPANIIKAMCLNVAHDCNLRCKYCFASQGDFKG-------------KRLLMDLQ 127

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
            G + ++ ++  S  R+   +   G GEPL NF+ VKK +              R T++T
Sbjct: 128 TGKDALDFLIKSSGYRRNLEVDFFG-GEPLMNFEVVKKLVEYGRIQEKKYNKHFRFTITT 186

Query: 222 SGFV---PNIARVGEEIG-VMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           +G       I  + E +   +L++     V++ +R  +   N K   ++++   +     
Sbjct: 187 NGTYLTDDKIDFINENMDNCVLSLDGRKCVNDYMRPTI---NGKGSFDIIVPKFKKLISK 243

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
              +             D   D   L++  K    K ++ P        Y
Sbjct: 244 RGDKDYFIRGTFTNENLDFSED---LMEFYKQGFKKTSIEPVVTDEKEPY 290


>gi|218133214|ref|ZP_03462018.1| hypothetical protein BACPEC_01076 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992087|gb|EEC58091.1| hypothetical protein BACPEC_01076 [Bacteroides pectinophilus ATCC
           43243]
          Length = 462

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 82/222 (36%), Gaps = 34/222 (15%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+++    G + ++ +V  S
Sbjct: 104 ALCLHIAHDCNLACKYCFAEE---------GEYHGR----RAMMSYEVGRKALDFLVANS 150

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-----RITLSTSGFV--PN 227
             R+   +   G GEP  NFD VK+ +       G S  K      R TL+T+G +    
Sbjct: 151 GSRRNLEVDFFG-GEPTMNFDVVKQLVE-----YGRSIEKEHNKNFRFTLTTNGVLLNDE 204

Query: 228 IARVG--EEIGVMLAISLHAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
           I      E   V+L+I      NDL R         Y +  ++   + +    N      
Sbjct: 205 IMEFANKEMANVVLSIDGRKEINDLMRPTRNNHGSSYDI--IMPKFKKFAESRNQTNYYV 262

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
                    D  +D L+L    +G   +I++ P    P  +Y
Sbjct: 263 RGTFTHNNIDFSKDVLHLAD--EGFE-QISVEPVVAKPEDDY 301


>gi|317504869|ref|ZP_07962825.1| pyruvate formate-lyase activating enzyme [Prevotella salivae DSM
           15606]
 gi|315664053|gb|EFV03764.1| pyruvate formate-lyase activating enzyme [Prevotella salivae DSM
           15606]
          Length = 286

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 97/274 (35%), Gaps = 48/274 (17%)

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEI 147
           R     +G    IET    +       +  Q GC + C FC+   T  Q  V+ +TA+E+
Sbjct: 39  RSSQGHVGYVHSIETFGSVDGPGIRYIIFLQ-GCPMRCLFCHNPDTWKQNKVKPMTADEL 97

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
           L Q    R+  G+  G                  I + G GE L   D + + L  A   
Sbjct: 98  LDQAERYRTYWGEKGG------------------ITISG-GEALLQIDFLIELLEKAHAR 138

Query: 208 M---GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264
                L  S +  T +   F     R+ +     + + +  + ++    L          
Sbjct: 139 QINTCLDTSAQPFTRNGLWFTK-FERLMKVTD-TVLLDIKHIRDEEHRKLTKFTNHN--- 193

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWP 322
            ++D  R+   +   + +   +V++ GI D+      L   L  +    +I+++P++   
Sbjct: 194 -ILDCARYLSEI--QKPVWIRHVLIPGITDNDEYLHELAAFLNTLHNIERIDILPYHTLG 250

Query: 323 GCEY------------LCSDQKDIVTFSECIKRS 344
             +Y                Q+ I   ++ ++ +
Sbjct: 251 TYKYDELHLDYPLKGVEPPTQERIDNANKIMESA 284


>gi|262274659|ref|ZP_06052470.1| pyruvate formate-lyase activating enzyme [Grimontia hollisae CIP
           101886]
 gi|262221222|gb|EEY72536.1| pyruvate formate-lyase activating enzyme [Grimontia hollisae CIP
           101886]
          Length = 246

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 85/247 (34%), Gaps = 52/247 (21%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T      R +T EEI+ +V+  R  +    G                
Sbjct: 29  GCLMRCKYCHNRDTWDLHDGREVTVEEIMKEVVTYRHFINASGGG--------------- 73

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGEEI 235
              V    GE +   + V+     A              L T+G++      I  V +  
Sbjct: 74  ---VTASGGEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYIRKHTDVIDEVLDAT 124

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
             ++ + L  +++D+   LV ++        +D  R+       ++    YV++ G  D 
Sbjct: 125 D-LVMLDLKQLNDDIHKDLVGVSNH----RTLDFARYLHQR--GQKTWIRYVVVPGYTDD 177

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
              A  L + +K +    K+ ++P++     ++                ++ +      +
Sbjct: 178 DESAHRLGEFIKDMDNIEKVEMLPYHQLGAHKWEALGLEYALKDVKPPKKETMERLKTLL 237

Query: 342 KRSGYSS 348
           +  G+  
Sbjct: 238 EGYGHKV 244


>gi|260589634|ref|ZP_05855547.1| radical SAM domain protein [Blautia hansenii DSM 20583]
 gi|260539874|gb|EEX20443.1| radical SAM domain protein [Blautia hansenii DSM 20583]
          Length = 456

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 26/215 (12%)

Query: 95  RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154
             I    E ETV         LC+     C+L C +C+             E   +    
Sbjct: 81  NAIEHFKERETVV------KALCLHIAHDCNLACRYCFAEE---------GEYHGR---- 121

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
           R+L+    G + ++ ++  S  RK   +   G GEPL N+  VK  ++   +   +    
Sbjct: 122 RALMSYEVGKQALDFLIANSGNRKNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHNKN 180

Query: 215 RRITLSTSGFV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            R TL+T+G +    I      E   V+L+I      +D           Y L  ++   
Sbjct: 181 FRFTLTTNGVLLDDEIMEFANKEMANVVLSIDGRKEVHDFMRPFRKGAGSYDL--VVPKF 238

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           + +      +         +   D   D L+L  +
Sbjct: 239 QKFAKSRGEKSYYARGTFTRHNLDFSEDVLHLADL 273


>gi|331083066|ref|ZP_08332183.1| hypothetical protein HMPREF0992_01107 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405068|gb|EGG84605.1| hypothetical protein HMPREF0992_01107 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 456

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 26/215 (12%)

Query: 95  RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154
             I    E ETV         LC+     C+L C +C+             E   +    
Sbjct: 81  NAIEHFKERETVV------KALCLHIAHDCNLACRYCFAEE---------GEYHGR---- 121

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
           R+L+    G + ++ ++  S  RK   +   G GEPL N+  VK  ++   +   +    
Sbjct: 122 RALMSYEVGKQALDFLIANSGNRKNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHNKN 180

Query: 215 RRITLSTSGFV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            R TL+T+G +    I      E   V+L+I      +D           Y L  ++   
Sbjct: 181 FRFTLTTNGVLLDDEIMEFANKEMANVVLSIDGRKEVHDFMRPFRKGAGSYDL--VVPKF 238

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           + +      +         +   D   D L+L  +
Sbjct: 239 QKFAKSRGEKSYYARGTFTRHNLDFSEDVLHLADL 273


>gi|20807642|ref|NP_622813.1| arylsulfatase regulator (Fe-S oxidoreductase) [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516186|gb|AAM24417.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Thermoanaerobacter
           tengcongensis MB4]
          Length = 469

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 70/195 (35%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++    C+L C +C+  T                   R L+    G + I+ ++  S
Sbjct: 95  AMCLNVAHDCNLRCKYCFASTGNFKG-------------GRKLMDFETGRKAIDFLIKSS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231
             R+   I   G GEPL NF+ VK+ +         +    + T++T+  +     I   
Sbjct: 142 GKRRNIEIDFFG-GEPLLNFEVVKQLVEYGKQKAKENKKNIKFTITTNAVLLDDEKIEYF 200

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            E    V+L++      ND   +    +  Y  ++++   + +      +          
Sbjct: 201 NENFSNVVLSLDGRKEVNDQMRVRADGSGTY--DVIVPKIQKFVKARGKKEYYVRGTFTA 258

Query: 291 GINDSPRDALNLIKI 305
              D   D L++  +
Sbjct: 259 KNLDFVEDVLHIADL 273


>gi|169832343|ref|YP_001718325.1| radical SAM domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169639187|gb|ACA60693.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 456

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 80/219 (36%), Gaps = 24/219 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+       R  T           R L+        ++ ++  S
Sbjct: 89  ALCLYVSHHCNLACRYCFARAG---RPDT----------VRKLMPSGVARRAVDLLISES 135

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
             R+   I   G GEPL NF  V+ ++  A +    +  +   T++T+G +  P + R  
Sbjct: 136 GARRHVEIDFFG-GEPLLNFPVVRDTIRYARERGEAAGKRVGFTVTTNGLLLTPEVRRFL 194

Query: 233 EEIGVMLAISL-HAVSNDLRNILVP---INRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
            +  V + +SL        R    P    + +  L  + +  R +     +R   +    
Sbjct: 195 LKNKVNVVLSLDGRPEAHDRWRRTPGGGGSHREVLPKIREYVREWEACRGSRGYYYVRGT 254

Query: 289 LKGIN-DSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
               N D   D   L++  +G    ++L P       EY
Sbjct: 255 FTRHNLDFAEDFRYLVE--QGFH-NVSLEPVVAPQDEEY 290


>gi|146296214|ref|YP_001179985.1| radical SAM domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409790|gb|ABP66794.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 453

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 66/195 (33%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C L C +C+                      R L+    G + I+ ++  S
Sbjct: 92  ALCLHVSHDCDLRCRYCFASAGSFK-------------QERRLMSFDVGKKAIDFLLKSS 138

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS---MGLSFSKRRITLSTSGFVPNIARV 231
             RK   +   G GEPL NF  VKK +  A       G   S    T +T+     I  +
Sbjct: 139 GSRKNLEVDFFG-GEPLLNFGIVKKIVEYARKEEKKYGKHISFTLTTNATALNDEIIEYL 197

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            E +  V+L+       ND   + +    +   +++      +    N +          
Sbjct: 198 NENMENVVLSHDGRPEINDF--MRIDREGRGTYDVITQNILKFIQKRNGKTYYVRGTFTS 255

Query: 291 GINDSPRDALNLIKI 305
              D  +D L+L  +
Sbjct: 256 KNLDFSKDVLHLYSL 270


>gi|154505871|ref|ZP_02042609.1| hypothetical protein RUMGNA_03413 [Ruminococcus gnavus ATCC 29149]
 gi|153793889|gb|EDN76309.1| hypothetical protein RUMGNA_03413 [Ruminococcus gnavus ATCC 29149]
          Length = 473

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 72/195 (36%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ +V  S
Sbjct: 107 ALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSLEVGKKALDFLVANS 153

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231
             R+   +   G GEPL N+  VK  ++   +    +    R TL+T+G +    +    
Sbjct: 154 GKRRNLEVDFFG-GEPLMNWQVVKDLVAYGRELEKTNDKHFRFTLTTNGVLLNDEVQEFV 212

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      ND   +    N K   ++++   +      N  +        +
Sbjct: 213 NKEMDNVVLSLDGRKEVND--RMRPFRNGKGSYDLIVPKFQKLAESRNQEKYYIRGTFTR 270

Query: 291 GINDSPRDALNLIKI 305
              D   D L+   +
Sbjct: 271 ENLDFSEDVLHFADL 285


>gi|297587385|ref|ZP_06946030.1| radical SAM domain protein [Finegoldia magna ATCC 53516]
 gi|297575366|gb|EFH94085.1| radical SAM domain protein [Finegoldia magna ATCC 53516]
          Length = 452

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 79/215 (36%), Gaps = 26/215 (12%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
              + IE     E     +C+     C+L C +C+        +             ++ 
Sbjct: 75  DDYLHIEDFKKREPVLKAMCLHVVHDCNLKCEYCFASQGDFGGH-------------KAY 121

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSK 214
           + +  G + ++ +V  S  RK   +   G GEPL +F+ VKK +      +D  G  F  
Sbjct: 122 MTEEVGKKALKYLVDNSGSRKFLEVDFFG-GEPLMDFELVKKLVKYGNEIADEKGKKF-- 178

Query: 215 RRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            R T++T+G + +  ++         V+L++      ND  N+   +N K   ++++   
Sbjct: 179 -RFTITTNGVLLDDDKIDFINKNMHNVVLSLDGRKSVND--NMRKTLNDKGSYDLIVPKF 235

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           +        +         K   D   D  +   +
Sbjct: 236 QKLIKGRKGKYYYVRGTFTKKNLDFSEDVKHFKDL 270


>gi|317056660|ref|YP_004105127.1| Radical SAM domain-containing protein [Ruminococcus albus 7]
 gi|315448929|gb|ADU22493.1| Radical SAM domain protein [Ruminococcus albus 7]
          Length = 457

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 84/254 (33%), Gaps = 27/254 (10%)

Query: 57  SQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL 116
             EV   L++ +     +   E+I      K L             + +V  P K    +
Sbjct: 44  PAEVIAKLSRSYPAEDIKECYEEIVSLYNDKILFSEDD---YEKYALASVASPVK---AM 97

Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           C+     C+L C +C+  T                 + R L+        I+ ++  S  
Sbjct: 98  CLHISHDCNLRCKYCFASTGDFG-------------VGRKLMDFETAKRAIDFLIEKSAD 144

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARV--G 232
           RK   +   G GEP  NF  V K++  A      +    R T +T+G      +      
Sbjct: 145 RKFLEVDFFG-GEPSMNFGVVMKTVEYARSREKETGKTFRFTTTTNGMHLTDEMIDFINK 203

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E   V+L+I      ND   + V  +  Y  + +    +       A R  +        
Sbjct: 204 EMYNVVLSIDGRKEVNDRVRVRVDGSGSY--DTITKNFKRLVDKRPADRDWYVRGTYTKY 261

Query: 293 N-DSPRDALNLIKI 305
           N D   D ++L  +
Sbjct: 262 NLDFSEDVMHLYDL 275


>gi|28897766|ref|NP_797371.1| pyruvate formate lyase-activating enzyme 1 [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153837337|ref|ZP_01990004.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           AQ3810]
 gi|260363808|ref|ZP_05776563.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           K5030]
 gi|260876932|ref|ZP_05889287.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           AN-5034]
 gi|260897926|ref|ZP_05906422.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           Peru-466]
 gi|260903461|ref|ZP_05911856.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           AQ4037]
 gi|28805979|dbj|BAC59255.1| pyruvate formate-lyase 1 activating enzyme [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149749368|gb|EDM60141.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           AQ3810]
 gi|308085486|gb|EFO35181.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           Peru-466]
 gi|308093910|gb|EFO43605.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           AN-5034]
 gi|308110360|gb|EFO47900.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           AQ4037]
 gi|308113908|gb|EFO51448.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           K5030]
 gi|328473257|gb|EGF44105.1| pyruvate formate lyase-activating enzyme 1 [Vibrio parahaemolyticus
           10329]
          Length = 246

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EEI+ +    R  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDTHDGKE--VTVEEIIAEAKSYRHFMNASGGGITCSG-------- 78

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
                     GE +   + V+     A+ + G+        L T+G++      I  V +
Sbjct: 79  ----------GEAMLQPEFVRDFFR-AAHAEGI-----HTCLDTNGYIRKHTEVIDEVLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              +++    H      ++ +   NR+      +D  R+   +   ++    YV++ G  
Sbjct: 123 ATDLVMLDIKHMKDEIHQDFIGVSNRR-----TLDFARYLHKI--GQKTWIRYVVVPGYT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D P  A  L + +K +    K+ L+P++     ++                ++ +     
Sbjct: 176 DDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYPLEGVNPPSKETMDEIQS 235

Query: 340 CIKRSGYSS 348
            + +   + 
Sbjct: 236 ILSQYHSNV 244


>gi|256752583|ref|ZP_05493437.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748521|gb|EEU61571.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 461

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++    C+L C +C+  T     +             R L+    G + I+ ++  S
Sbjct: 95  AMCLNVAHDCNLRCKYCFASTGDFKGS-------------RKLMDFETGKKAIDFLIKSS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231
             R+   +   G GEPL NF+ VK+ +    +    +    + T++T+  +     I   
Sbjct: 142 GKRRNIEVDFFG-GEPLLNFEVVKRLVEYGKEKAKENKKVIKFTITTNAVLLDDEKIKYF 200

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            +    V+L++      ND  ++ + ++     + ++   + +      +          
Sbjct: 201 NKNFSNVVLSLDGRKEVND--SMRIRVDGSGSYDTIVPKIKKFVESRGKKEYYVRGTFTA 258

Query: 291 GINDSPRDALNLIKI 305
              D   D L++  +
Sbjct: 259 KNLDFANDVLHIADL 273


>gi|78187319|ref|YP_375362.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
 gi|78167221|gb|ABB24319.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
          Length = 312

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 79/227 (34%), Gaps = 30/227 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C +C        R                     P    +E       G +I  I 
Sbjct: 27  CTWNCIYC---QLGRTR----------AYTLERKEFYPPEDILLEIQEALHSGARIDWIT 73

Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
            +G GE +       +   +   +D          + + T+G + ++  V  E+    A+
Sbjct: 74  FVGSGETMLYQGIGRLIDEVKKMTD--------IPVAVITNGSLFSLPEVRSELLHADAV 125

Query: 242 --SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
             SL+A S +L   +      +   + ++  R +     + R+  E ++L G+NDS    
Sbjct: 126 LPSLNAGSEELHQRISRPAPGFTFSLHLEGLRQF-RREYSGRLWVEVMLLGGVNDSDEAL 184

Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343
            ++   L+ I      + +IP  P    + L  D++ I   +  +  
Sbjct: 185 QDIASALRSINPDMVHL-VIPTRPSTEKDVLLPDEERIERAAAILAE 230


>gi|160945445|ref|ZP_02092671.1| hypothetical protein FAEPRAM212_02968 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443176|gb|EDP20181.1| hypothetical protein FAEPRAM212_02968 [Faecalibacterium prausnitzii
           M21/2]
          Length = 487

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 76/204 (37%), Gaps = 24/204 (11%)

Query: 110 EKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165
            K+R T    LC+     C+L+CS+C+    +   +             R+L+    G  
Sbjct: 95  FKNRNTVVKALCLHVAHSCNLSCSYCFASQGRYHGD-------------RALMSFEVGKR 141

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
            ++ ++  S  R+   +   G GEPL NFD VKK ++   +   +     R T++T+G +
Sbjct: 142 AMDFLIENSGTRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQEKIHNKNFRFTMTTNGVL 200

Query: 226 ---PNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
                I    +E   V+L++      ND     V        + ++   + +      + 
Sbjct: 201 IDDDVIDFCNKECHNVVLSLDGRKEVND--RFRVDCAGNGSYDRIVPKFQEFVKKRGDKN 258

Query: 282 ITFEYVMLKGINDSPRDALNLIKI 305
                       D   D  ++  +
Sbjct: 259 YYMRGTYTHFNTDFTNDIFHMADL 282


>gi|160934251|ref|ZP_02081638.1| hypothetical protein CLOLEP_03122 [Clostridium leptum DSM 753]
 gi|156866924|gb|EDO60296.1| hypothetical protein CLOLEP_03122 [Clostridium leptum DSM 753]
          Length = 458

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 29/233 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            +C++    C+L C +C+         R L   EI               G + ++ ++ 
Sbjct: 99  AMCLNVAHDCNLRCEYCFAAKGDFGGERMLMPFEI---------------GKKAVDFLLE 143

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV- 231
            S  R    +   G GEPL NFD VK+ +S A           R T++T+G +    ++ 
Sbjct: 144 KSGTRHNLEMDFFG-GEPLMNFDVVKQVVSYARSKEKEYNKNFRFTITTNGLLLTDDKIE 202

Query: 232 ---GEEIGVMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
               E    +L++     V++ LR  +   N K   + ++   +        +       
Sbjct: 203 FINREMSNCVLSLDGRKEVNDRLRIKI---NGKGCYDQIVPQYQKLVAGRGDKDYYARGT 259

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSEC 340
             K   D  +D L++  +  G   ++++ P    P  +Y   ++     F E 
Sbjct: 260 FTKYNLDFTQDVLHMADL--GFD-QVSVEPVVSDPMLDYSIKEEDLPRVFQEY 309


>gi|331090634|ref|ZP_08339485.1| hypothetical protein HMPREF9477_00128 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401074|gb|EGG80669.1| hypothetical protein HMPREF9477_00128 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 467

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 74/195 (37%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ ++  S
Sbjct: 107 ALCIHIAHDCNLACKYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 153

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231
             R+   +   G GEPL N+  VK  ++   +   +     R TL+T+G +    +    
Sbjct: 154 GNRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHNKNFRFTLTTNGVLLNDEVQEFV 212

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      ND   +    N K   ++++   +      N ++        +
Sbjct: 213 NKEMDNVVLSLDGRKEVNDK--MRPFRNGKGSYDLIVPKFQKLADSRNQQKYYIRGTFTR 270

Query: 291 GINDSPRDALNLIKI 305
              D  +D L+   +
Sbjct: 271 DNLDFSKDVLHFADL 285


>gi|326390121|ref|ZP_08211682.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993769|gb|EGD52200.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 461

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 72/195 (36%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++    C+L C +C+  T     +             R L+    G + I+ ++  S
Sbjct: 95  AMCLNVAHDCNLRCKYCFASTGDFKGS-------------RKLMDFETGKKAIDFLIKSS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231
             R+   +   G GEPL NF+ VK+ +         +    + T++T+  +     I   
Sbjct: 142 GKRQNIEVDFFG-GEPLLNFEVVKQLVEYGKQKAKENKKTIKFTITTNAVLLDDEKIKYF 200

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            E    V+L++      ND  N+ + ++     + ++   + +      +          
Sbjct: 201 NENFSNVVLSLDGRKEVND--NMRIRVDGSGTYDTIVPKIKKFVESRGKKEYYVRGTFTA 258

Query: 291 GINDSPRDALNLIKI 305
              D   D L++  +
Sbjct: 259 KNLDFANDVLHIADL 273


>gi|227486366|ref|ZP_03916682.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235547|gb|EEI85562.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 239

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 80/229 (34%), Gaps = 47/229 (20%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC L C FC+   T +    R++T EEI+ + L  +    +  G                
Sbjct: 26  GCPLRCVFCHNPDTQSLDYGRDVTVEEIVKRALRMKPYFKNGGG---------------- 69

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGV 237
              V +  GEPL +   V +++               + + TSG         +  E  +
Sbjct: 70  ---VTLSGGEPLASGAFVLETIRALHKE------AIHVAVDTSGVGDEKYYDDIAREADL 120

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +L + +          +   N +  L   +++           R+   +VM+  + D+  
Sbjct: 121 IL-LDIKHYDPYFFYEITK-NYQDKLIKFMESI-----KKTDTRVWIRHVMMPFVTDTKE 173

Query: 298 DALNLIKILKGIPA---KINLIPFNPWP-------GCEYLCSDQKDIVT 336
           D   L+  ++ I A   KI ++P++          G  Y   + + +  
Sbjct: 174 DMDGLVDFIRPIKANIDKIEILPYHKLGVCKYADLGKPYRIKNMEAMDK 222


>gi|237739305|ref|ZP_04569786.1| Fe-S oxidoreductase [Fusobacterium sp. 2_1_31]
 gi|229422913|gb|EEO37960.1| Fe-S oxidoreductase [Fusobacterium sp. 2_1_31]
          Length = 284

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 34/234 (14%)

Query: 124 CSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           C+L C FC    T   +L R                        E +E +       K  
Sbjct: 28  CNLNCIFCECGATKKIQLER-----------------KRFKDMNEILEEISAVLKDIKPD 70

Query: 181 NIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV- 237
            I   G GEP  + D  N+ K++       G      +I L T+  +     + +E+   
Sbjct: 71  YITFSGSGEPTLSLDLGNISKAIKEDLKYEG------KICLITNSLLLADENLMKELEYI 124

Query: 238 -MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            ++  +L+ ++ D+   +V  + +  +E +     +    +   +I  E  +L+ +NDS 
Sbjct: 125 DLIVPTLNTLTQDIFEKIVRPDYRTSVEEIRKGFINLNKSNYKGKIWIEIFILENVNDSD 184

Query: 297 RDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGY 346
           ++ +++   LK    + + I  N         +      + I    + ++ +G 
Sbjct: 185 KNFVDIANFLKSENIRYDKIQLNTIDRVGAERDLKAISFEKISRAKKILEENGL 238


>gi|170761428|ref|YP_001788504.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408417|gb|ACA56828.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 300

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 92/274 (33%), Gaps = 53/274 (19%)

Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151
            +  + R T C      C                  C+FC   T     N +  E + + 
Sbjct: 48  IMFFEERCTACGICVKRCPQKVITMKNNIPVVDEGKCNFCGKCTN-FCPN-SVREYVGKD 105

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L ++ ++ +    E                +   G GEP+ + D     ++   +     
Sbjct: 106 LTSQEIIKEIIKDEVFYEQSGGG-------VTFSG-GEPMLHAD----FINGILEE--CK 151

Query: 212 FSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
                 T+ TSG+V      +V +++ + L   L +++N++      +     +   ++ 
Sbjct: 152 VRGIHTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLEL 209

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYLC 328
              Y        I     ++K +ND+  +    IK +  +   ++NL+P++     +Y  
Sbjct: 210 LSKY-----GHNIYLRIPIIKDVNDNNENIDETIKFISKLHLIQVNLLPYHKMGMDKYKR 264

Query: 329 ------------SDQKDIVTFSECIKRSGYSSPI 350
                          + +   +E  K++G    I
Sbjct: 265 LKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298


>gi|167037434|ref|YP_001665012.1| radical SAM domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115847|ref|YP_004186006.1| Radical SAM domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856268|gb|ABY94676.1| Radical SAM domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319928938|gb|ADV79623.1| Radical SAM domain protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 461

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++    C+L C +C+  T     +             R L+    G + I+ ++  S
Sbjct: 95  AMCLNVAHDCNLRCKYCFASTGDFKGS-------------RKLMDFETGKKAIDFLIKSS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231
             R+   +   G GEPL NF+ VK+ +    +    +    + T++T+  +     I   
Sbjct: 142 GKRRNIEVDFFG-GEPLLNFEVVKQLVEYGKEKAKENKKVIKFTITTNAVLLDDEKIKYF 200

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            +    V+L++      ND  ++ + ++     + ++   + +      +          
Sbjct: 201 NKNFSNVVLSLDGRKEVND--SMRIRVDSSGSYDTIVPKIKKFVESRGKKEYYVRGTFTA 258

Query: 291 GINDSPRDALNLIKI 305
              D   D L++  +
Sbjct: 259 KNLDFANDVLHIADL 273


>gi|291542691|emb|CBL15801.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Ruminococcus bromii
           L2-63]
          Length = 457

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 22/196 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+    K        E        R+L+    G   I+ ++  S
Sbjct: 100 ALCLHIAHTCNLNCEYCFASQGKYH-----GE--------RALMSFEVGKRAIDFLIENS 146

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
             R    +   G GEPL NFD VK+ ++ A           R TL+T+G +   ++    
Sbjct: 147 GSRVNLEVDFFG-GEPLMNFDVVKQIVAYARSIEKEHNKNFRFTLTTNGMLVDDDVIEFA 205

Query: 233 --EEIGVMLAISLHAVS-NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
             E   V+L++       + LR     +N K   ++++   + +      +         
Sbjct: 206 NKECHNVVLSLDGRKEVHDHLRK---TVNGKGSYDIIVPKFQEFVKKRGNKDYYVRGTYT 262

Query: 290 KGINDSPRDALNLIKI 305
               D   D  ++  +
Sbjct: 263 HNNTDFTNDIFHMADL 278


>gi|153835535|ref|ZP_01988202.1| pyruvate formate-lyase 1-activating enzyme [Vibrio harveyi HY01]
 gi|148867892|gb|EDL67111.1| pyruvate formate-lyase 1-activating enzyme [Vibrio harveyi HY01]
          Length = 246

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 86/249 (34%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EEI+ +    R  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDTHDGKE--VTVEEIIAEAKTYRHFMNASGGGITCSG-------- 78

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
                     GE +   + V+     A+ + G+        L T+G++      I  V +
Sbjct: 79  ----------GEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVIDEVLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  + +++    + ++ +     ++D  R+   +   ++    YV++ G  
Sbjct: 123 ATD-LVMLDLKHMKDEIHQEFIGVSNR----RVLDFARYLHKI--GQKTWIRYVVVPGYT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D P  A  L + +K +    K+ L+P++     ++                ++ +     
Sbjct: 176 DEPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGVEYPLDGVNPPSKETMDEIQS 235

Query: 340 CIKRSGYSS 348
            + +   + 
Sbjct: 236 ILSQYHSNV 244


>gi|225019137|ref|ZP_03708329.1| hypothetical protein CLOSTMETH_03089 [Clostridium methylpentosum
           DSM 5476]
 gi|224948110|gb|EEG29319.1| hypothetical protein CLOSTMETH_03089 [Clostridium methylpentosum
           DSM 5476]
          Length = 469

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 95/251 (37%), Gaps = 28/251 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C+     C+L C++C+  T                   R L+    G   I+ ++  S
Sbjct: 107 AMCLHVAHDCNLRCNYCFASTGDFG-------------HGRKLMTAETGKHAIDFLLEHS 153

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             R    +   G GEPL NFD VK+ +  A           R T++T+G + + A++   
Sbjct: 154 GDRHNLELDFFG-GEPLMNFDVVKQVVEYARSKEKEYNKNFRFTITTNGMLLDDAKIDYI 212

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      ND     V  +  Y  + +++  R   G    +         K
Sbjct: 213 NKEMSNVVLSLDGRKQVNDRMRPRVDGSGSY--DKIVNRYRQLVGSRGDKDYYVRGTFTK 270

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECIKRSGYSS 348
              D  +D L++  +  G   ++++ P    P  +Y  ++Q    I    E + +   + 
Sbjct: 271 YNLDFSKDVLHINDL--GFD-QLSVEPVVAKPEEDYALTEQDLPAIFNEYEHLAKEIIN- 326

Query: 349 PIRTPRGLDIL 359
             R  +G  I 
Sbjct: 327 --RKKKGSGIN 335


>gi|289811062|ref|ZP_06541691.1| ribosomal RNA large subunit methyltransferase N [Salmonella
          enterica subsp. enterica serovar Typhi str. AG3]
          Length = 56

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 1  MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR 45
          +N   K +L+ + R+++ E    +G        R  Q+ KW+Y  
Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHY 56


>gi|312898867|ref|ZP_07758255.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
 gi|310620029|gb|EFQ03601.1| radical SAM domain protein [Megasphaera micronuciformis F0359]
          Length = 466

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 71/193 (36%), Gaps = 14/193 (7%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           +LC++    C+L C +C+        N             R L+        I+ ++  S
Sbjct: 99  SLCLNIAHDCNLRCKYCFASQGDYDTNK------------RELMSFDVAKRAIDLLIESS 146

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
            G++    V    GEPL NF  VK+++        L     +++L+T+G + +  ++   
Sbjct: 147 AGKRQHCEVDFFGGEPLMNFGVVKQTIEYIRKQEKLHNKVFKLSLTTNGLLLDEEKITYL 206

Query: 235 IGVMLAISLH-AVSNDLRNILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
               +++ L      D+ N + P    +   + ++   +H     N           K  
Sbjct: 207 TDNHISLILSLDGREDVHNRMRPDAGGHGSYKRIVKNLQHAVSGRNGEEYYVRGTYTKYN 266

Query: 293 NDSPRDALNLIKI 305
            D   D  ++  +
Sbjct: 267 LDFTADVEHMADL 279


>gi|225387254|ref|ZP_03757018.1| hypothetical protein CLOSTASPAR_01006 [Clostridium asparagiforme
           DSM 15981]
 gi|225046646|gb|EEG56892.1| hypothetical protein CLOSTASPAR_01006 [Clostridium asparagiforme
           DSM 15981]
          Length = 466

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 78/206 (37%), Gaps = 24/206 (11%)

Query: 108 IPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           +  K R T    LC+     C+L C +C+             E   +    R+L+    G
Sbjct: 96  MDFKRRKTVVKALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSYEVG 142

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
            + ++ ++  S  R+   +   G GEPL N+D VK+ +            K R TL+T+G
Sbjct: 143 KKALDFLIANSGSREHLEVDFFG-GEPLMNWDVVKRLVEYGRSKEAEFHKKFRFTLTTNG 201

Query: 224 FVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
            + N   +     E   V+L++      ND   +    N K   E+++   + +  L + 
Sbjct: 202 VLLNDEVMEFCNREMSNVVLSLDGRPEVNDK--MRPFRNGKGSYELIVPKFQKFAELRDQ 259

Query: 280 RRITFEYVMLKGINDSPRDALNLIKI 305
                     +   D   D L+   +
Sbjct: 260 NNYYVRGTFTRHNLDFAADVLHYADL 285


>gi|322807498|emb|CBZ05073.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
           H04402 065]
          Length = 300

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 94/274 (34%), Gaps = 53/274 (19%)

Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151
            +  + R T C      C                  C+FC   T     N  A E + + 
Sbjct: 48  IMFFEERCTACGICVKRCPQKVITMKNNIPMVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L ++ ++ +    E                +   G GEP+ + D     ++   +     
Sbjct: 106 LTSQEIIKEIIKDEVFYEQSGGG-------VTFSG-GEPMLHAD----FINGILEE--CK 151

Query: 212 FSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           F     T+ TSG+V      +V +++ + L   L +++N++      +     +   ++ 
Sbjct: 152 FRGIHTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLEL 209

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYLC 328
              Y        I     ++K +ND+ ++    IK +  +   ++NL+P++     +Y  
Sbjct: 210 LSKY-----GHNIYLRIPIIKDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYKR 264

Query: 329 ------------SDQKDIVTFSECIKRSGYSSPI 350
                          + +   +E  K++G    I
Sbjct: 265 LKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298


>gi|237796639|ref|YP_002864191.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum Ba4 str. 657]
 gi|229263902|gb|ACQ54935.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum Ba4 str. 657]
          Length = 300

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 92/274 (33%), Gaps = 53/274 (19%)

Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151
            +  + R T C      C                  C+FC   T     N  A E + + 
Sbjct: 48  IMFFEERCTACGICVKRCPQKVITMKNNIPVVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L ++ ++ +    E                +   G GEP+ + D     ++   +     
Sbjct: 106 LTSQEIIKEIIKDEVFYEQSGGG-------VTFSG-GEPMLHAD----FINGILEE--CK 151

Query: 212 FSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
                 T+ TSG+V      +V +++ + L   L +++N++      +     +   ++ 
Sbjct: 152 VRGIHTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLEL 209

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYLC 328
              Y        I     ++K +ND+  +    IK +  +   ++NL+P++     +Y  
Sbjct: 210 LSKY-----GHNIYLRIPIIKDVNDNNENIDETIKFISKLHLIQVNLLPYHKMGMDKYKR 264

Query: 329 ------------SDQKDIVTFSECIKRSGYSSPI 350
                          + +   +E  K++G    I
Sbjct: 265 LKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298


>gi|254303597|ref|ZP_04970955.1| iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323789|gb|EDK89039.1| iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 284

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 82/237 (34%), Gaps = 38/237 (16%)

Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           C+L C FC    T   +L R       EIL ++      +                    
Sbjct: 28  CNLNCIFCECGATKKIQLERQRFKDMNEILNEIQSVLKDIKPDY---------------- 71

Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
              I   G GEP  + D  N+ K++       G      +I L T+  +    +V +E+ 
Sbjct: 72  ---ITFSGSGEPTLSLDLGNISKAIKKDLKYKG------KICLITNSLLLANEQVTKELK 122

Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              ++  +L+ +  D+   +V  + +  ++ +     +    +   +I  E  +L+ IND
Sbjct: 123 YIDLIVPTLNTLKQDIFEKIVRPDYRTSVDEIKKGFINLNNSNYKGKIWIEIFILENIND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347
           S  + + +   L     K + I  N         +        I+     ++ +G  
Sbjct: 183 SEENFIEIANFLNSENIKYDKIQLNTIDRVGAERDLKAISFDKILKAKRILEENGLH 239


>gi|269960975|ref|ZP_06175344.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi 1DA3]
 gi|269834194|gb|EEZ88284.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi 1DA3]
          Length = 246

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EEI+ +    R  +    G              
Sbjct: 29  GCLMRCKYCHNRDTWDTHDGKE--VTVEEIIAEAKTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
                V    GE +   + V+     A+ + G+        L T+G++      I  V +
Sbjct: 74  -----VTCSGGEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVIDEVLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              +++    H      ++ +   NR+     ++D  R+   +   ++    YV++ G  
Sbjct: 123 ATDLVMLDLKHMKDEIHQDFIGVSNRR-----VLDFARYLHKI--GQKTWIRYVVVPGYT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D P  A  L + +K +    K+ L+P++     ++                ++ +     
Sbjct: 176 DEPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYPLDGVNPPSKETMDEIQS 235

Query: 340 CIKRSGYSS 348
            + +   + 
Sbjct: 236 ILSQYHSNV 244


>gi|126700364|ref|YP_001089261.1| putative radical SAM family protein [Clostridium difficile 630]
 gi|115251801|emb|CAJ69636.1| putative radical SAM-family protein [Clostridium difficile]
          Length = 459

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 75/199 (37%), Gaps = 27/199 (13%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+             E        + L+    G   I+ ++  S
Sbjct: 95  ALCLNVAHDCNLKCKYCFAAQGDF-----GGE--------KELMSFEVGKAAIDYLIANS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV---PNI 228
             RK   I   G GEPL NF+ VK+ +            +    R T++T+G +     I
Sbjct: 142 GSRKNLEIDFFG-GEPLMNFEVVKQLVDYGRSVEKDYNKNI---RFTITTNGVLLNDEII 197

Query: 229 ARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EY 286
             + E +  V+L++      ND  N+   +N K   ++ +   +      +  +  +   
Sbjct: 198 DYINENMHNVVLSLDGRKEVND--NMRPTLNDKGSYDITLPRFKKLVEKRSKDKYYYIRG 255

Query: 287 VMLKGINDSPRDALNLIKI 305
              +   D  +D ++   +
Sbjct: 256 TFTRDNLDFSKDVMHFADL 274


>gi|254229008|ref|ZP_04922429.1| pyruvate formate-lyase 1-activating enzyme [Vibrio sp. Ex25]
 gi|262394749|ref|YP_003286603.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25]
 gi|151938476|gb|EDN57313.1| pyruvate formate-lyase 1-activating enzyme [Vibrio sp. Ex25]
 gi|262338343|gb|ACY52138.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25]
          Length = 246

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 82/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EEI+ +    R  +    G              
Sbjct: 29  GCLMRCKYCHNRDTWDTHDGKE--VTVEEIISEAKSYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
                V    GE +   + V+     A              L T+G+V      I  V +
Sbjct: 74  -----VTCSGGEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYVRKHTDVIDEVLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + +  + +++   L+ ++ +      +D  R+   +   ++    YV++ G  
Sbjct: 123 ATD-LVMLDIKHMKDEVHQDLIGVSNR----RTLDFARYLQKI--GKKTWIRYVVVPGYT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D P  A  L + +K +    K+ L+P++     ++                ++ +     
Sbjct: 176 DDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYPLEGVNPPPKETMDEIQS 235

Query: 340 CIKRSGYSS 348
            + +   + 
Sbjct: 236 ILAQYNDNV 244


>gi|307130799|ref|YP_003882815.1| pyruvate formate lyase activating enzyme 1 [Dickeya dadantii 3937]
 gi|306528328|gb|ADM98258.1| pyruvate formate lyase activating enzyme 1 [Dickeya dadantii 3937]
          Length = 246

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V+  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKEVVTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A    G++       L T+GFV    P I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHEQGIN-----TCLDTNGFVRRYDPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    L+        Y    N  R    YV++ G +
Sbjct: 123 VTD-LVMLDLKQLNDEVHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  K +    KI L+P++     ++                   +     
Sbjct: 176 DDDASAHQLGEFTKDMHNIEKIELLPYHELGKHKWTAMGEEYKLDGVKPPKADTMDRIKS 235

Query: 340 CIKRSGYSS 348
            +   G+  
Sbjct: 236 ILTSYGHKV 244


>gi|213622072|ref|ZP_03374855.1| hypothetical protein SentesTyp_32941 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
          Length = 55

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 1  MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV 44
          +N   K +L+ + R+++ E    +G        R  Q+ KW+Y 
Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYH 55


>gi|288870671|ref|ZP_06114917.2| radical SAM domain protein [Clostridium hathewayi DSM 13479]
 gi|288866314|gb|EFC98612.1| radical SAM domain protein [Clostridium hathewayi DSM 13479]
          Length = 451

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 81/216 (37%), Gaps = 23/216 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ ++  S
Sbjct: 94  ALCLHIAHDCNLACQYCFAEE---------GEYHGR----RALMSFEVGKKALDFLIANS 140

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             R+   +   G GEPL N++ VK+ +              R T++T+G + N   +   
Sbjct: 141 GNRRNLEVDFFG-GEPLMNWEVVKQLVEYGRSKEKEYNKNFRFTMTTNGVLLNDEIMEYC 199

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      ND   +      K   ++++   R +  +   R         +
Sbjct: 200 NREMSNVVLSLDGRKEVNDK--MRPFRGGKGSYDLIVPKFRKFAEMRGDRDYYVRGTFTR 257

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
              D  +D +    +  G  + +++ P    P  EY
Sbjct: 258 HNLDFSKDVMEFADL--GFRS-MSIEPVVAAPEEEY 290


>gi|91225254|ref|ZP_01260422.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
           12G01]
 gi|91189893|gb|EAS76165.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
           12G01]
          Length = 246

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 82/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EEI+ +    R  +    G              
Sbjct: 29  GCLMRCKYCHNRDTWDTHDGKE--VTVEEIISEAKSYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
                V    GE +   + V+     A              L T+G+V      I  V +
Sbjct: 74  -----VTCSGGEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYVRKHTDVIDEVLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + +  + +++   L+ ++ +      +D  R+   +   ++    YV++ G  
Sbjct: 123 ATD-LVMLDIKHMKDEVHQDLIGVSNR----RTLDFARYLQKI--GKKTWIRYVVVPGYT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D P  A  L + +K +    K+ L+P++     ++                ++ +     
Sbjct: 176 DDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYPLEGVNPPPKETMDEIQS 235

Query: 340 CIKRSGYSS 348
            + +   + 
Sbjct: 236 ILAQYNDNV 244


>gi|325262044|ref|ZP_08128782.1| radical SAM domain protein [Clostridium sp. D5]
 gi|324033498|gb|EGB94775.1| radical SAM domain protein [Clostridium sp. D5]
          Length = 473

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 74/195 (37%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ ++  S
Sbjct: 107 ALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 153

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231
             R+   +   G GEPL N+  VK  ++   +   L     R TL+T+G +    +    
Sbjct: 154 GSRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKLHNKHFRFTLTTNGVLLNDEVQEFV 212

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      ND   +    N K   ++++   +      N  +        +
Sbjct: 213 NREMDNVVLSLDGRKEVND--RMRPFRNGKGSYDLIVPKFQKLADSRNQEKYYIRGTFTR 270

Query: 291 GINDSPRDALNLIKI 305
              D  +D ++  ++
Sbjct: 271 ENLDFSKDVMHFAEL 285


>gi|269967633|ref|ZP_06181683.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
           40B]
 gi|269827720|gb|EEZ82004.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus
           40B]
          Length = 246

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 82/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EEI+ +    R  +    G              
Sbjct: 29  GCLMRCKYCHNRDTWDTHDGKE--VTVEEIISEAKSYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
                V    GE +   + V+     A              L T+G+V      I  V +
Sbjct: 74  -----VTCSGGEAMLQPEFVRDFFRAAKTE------GIHTCLDTNGYVRKHTDVIDEVLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + +  + +++   L+ ++ +      +D  R+   +   ++    YV++ G  
Sbjct: 123 ATD-LVMLDIKHMKDEVHQDLIGVSNR----RTLDFARYLQKI--GKKTWIRYVVVPGYT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D P  A  L + +K +    K+ L+P++     ++                ++ +     
Sbjct: 176 DDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYPLEGVNPPPKETMDEIQS 235

Query: 340 CIKRSGYSS 348
            + +   + 
Sbjct: 236 ILAQYNDNV 244


>gi|331086137|ref|ZP_08335219.1| hypothetical protein HMPREF0987_01522 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406296|gb|EGG85810.1| hypothetical protein HMPREF0987_01522 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 466

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ ++  S
Sbjct: 110 ALCMHIAHDCNLACKYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 156

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231
             R+   +   G GEPL N+  VK  ++   +   +     R T++T+G +    +    
Sbjct: 157 GNRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHNKNFRFTITTNGVLLNDEVQEFV 215

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      ND   +    N K   ++++   +      N  +        +
Sbjct: 216 NKEMDNVVLSLDGRKEVNDK--MRPFRNGKGSYDLIVPKFQKLADSRNQEKYYVRGTFTR 273

Query: 291 GINDSPRDALNLIKI 305
              D  +D L+   +
Sbjct: 274 DNLDFSKDVLHFADL 288


>gi|332653319|ref|ZP_08419064.1| radical SAM domain protein [Ruminococcaceae bacterium D16]
 gi|332518465|gb|EGJ48068.1| radical SAM domain protein [Ruminococcaceae bacterium D16]
          Length = 471

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 71/224 (31%), Gaps = 27/224 (12%)

Query: 88  WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
            L                    +     LC+     C+L C +C+  T            
Sbjct: 74  LLFSSDDYIDADKA---MALPRQAVVKALCLHVSHDCNLRCKYCFASTGDFG-------- 122

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
                  R ++        I+ +V  S  R+   +   G GEPL   D VKK++  A   
Sbjct: 123 -----TGRKIMDFETAKRAIDWVVAKSGKRRNIEVDFFG-GEPLMAMDTVKKTVEYARSL 176

Query: 208 MGLSFSKRRITLSTSGF------VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261
                   R T++T+G       +  I R  E   V+L++      ND  ++   +N K 
Sbjct: 177 EKEHDKVFRFTITTNGVLLNDENIEYINR--EMSNVVLSLDGRPGVND--HMRPTVNGKG 232

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
             E+++   +        +         +   D   D  +L  +
Sbjct: 233 SYEVIVPKFQKLVAGRGTKDYYARGTFTRENLDFGEDVKHLASL 276


>gi|331092439|ref|ZP_08341264.1| hypothetical protein HMPREF9477_01907 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401282|gb|EGG80871.1| hypothetical protein HMPREF9477_01907 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 303

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 31/156 (19%)

Query: 214 KRRITLSTSGFVPNIARVGEEIGV------MLAISLHAVSNDLRNILVPINRKYPLEMLI 267
              IT+ T GF P      E   +           +  + N+     +  +       LI
Sbjct: 155 GYNITIDTCGFAPE-----ENFQIVLPYVDTFLYDIKLMDNEKHKKYMGQSN-----ELI 204

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCE 325
                Y    N  RI     ++ G+NDS  +   +I  LK   +   +NL+P++     +
Sbjct: 205 FTNLKYLS-DNGARIYIRIPVIGGVNDSDEEIQAIISYLKENISVAQVNLLPYHDIASSK 263

Query: 326 YLC------------SDQKDIVTFSECIKRSGYSSP 349
           Y                ++ +    E  +++G+++ 
Sbjct: 264 YQRLDVTYKGKEFTVPSKERMEELKEMFQKNGFTNT 299


>gi|325662334|ref|ZP_08150943.1| hypothetical protein HMPREF0490_01682 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471336|gb|EGC74559.1| hypothetical protein HMPREF0490_01682 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 466

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ ++  S
Sbjct: 110 ALCMHIAHDCNLACKYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 156

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231
             R+   +   G GEPL N+  VK  ++   +   +     R T++T+G +    +    
Sbjct: 157 GNRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHNKNFRFTITTNGVLLNDEVQEFV 215

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      ND   +    N K   ++++   +      N  +        +
Sbjct: 216 NKEMDNVVLSLDGRKEVNDK--MRPFRNGKGSYDLIVPKFQKLADSRNQEKYYVRGTFTR 273

Query: 291 GINDSPRDALNLIKI 305
              D  +D L+   +
Sbjct: 274 DNLDFSKDVLHFADL 288


>gi|325291406|ref|YP_004267587.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324966807|gb|ADY57586.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 490

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 94/270 (34%), Gaps = 41/270 (15%)

Query: 91  RFPARCIGGPVEIETVYIPEKSR---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
           +          E E   I          +C+     C+L C++C+ GT            
Sbjct: 85  QLQDEGTLFSPEAEKYEIRYPEEPLIKAICLHVAHDCNLRCTYCFAGTGAFG-------- 136

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
                  R ++    G + I+ ++  S  R    +   G GEPL NF+ VK+ ++    +
Sbjct: 137 -----GGRRMMDLETGKKAIDFILEHSGSRPHCEVDFFG-GEPLMNFEVVKELVTYGKKA 190

Query: 208 MGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP--- 262
                 K + TL+T+  +    I    E   +   +SL     D R  +    R +P   
Sbjct: 191 AKEKGKKIKFTLTTNAVLLDQEIRTFLEREEISAVLSL-----DGRKEVNDRARPFPGGR 245

Query: 263 ------LEMLIDACRHYPGLSNARRITFEYV--MLKGIN-DSPRDALNLIKILKGIPAKI 313
                 +  + +     P  S     T+ YV       N D  +D ++L  +  GI  +I
Sbjct: 246 GSYDRIVPRIREFIERRPEASPYAIGTYYYVRGTFTHFNTDFHKDVIHLADL--GID-RI 302

Query: 314 NLIPFNPWPGCEY--LCSDQKDIVTFSECI 341
           +L P    P  EY     D   I    + +
Sbjct: 303 SLEPVVAEPDKEYAFQEEDMDRINEAYDVL 332


>gi|168183500|ref|ZP_02618164.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum Bf]
 gi|182673358|gb|EDT85319.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum Bf]
          Length = 300

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 94/275 (34%), Gaps = 55/275 (20%)

Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151
            +  + R T C      C                  C+FC   T     N  A E + + 
Sbjct: 48  IMFFEERCTACGICVKRCPQKVITMKNNIPMVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-IASDSMGL 210
           L ++ ++ +    E                +   G GEP+ + D     ++ I  +    
Sbjct: 106 LTSQEIIKEIIKDEVFYEQSGGG-------VTFSG-GEPMLHAD----FINGILEECKAR 153

Query: 211 SFSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
                  T+ TSG+V      +V +++ + L   L +++N++      +     +   ++
Sbjct: 154 GI---HTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLE 208

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYL 327
               Y        I     ++K +ND+ ++    IK +  +   ++NL+P++     +Y 
Sbjct: 209 LLSKY-----GHNIYLRIPIIKDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYK 263

Query: 328 C------------SDQKDIVTFSECIKRSGYSSPI 350
                           + +   +E  K++G    I
Sbjct: 264 RLKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298


>gi|15894473|ref|NP_347822.1| Fe-S-cluster redox protein [Clostridium acetobutylicum ATCC 824]
 gi|15024112|gb|AAK79162.1|AE007633_6 Predicted Fe-S-cluster redox enzyme, YLON B.subtilis homolog
           [Clostridium acetobutylicum ATCC 824]
 gi|325508604|gb|ADZ20240.1| Fe-S-cluster redox enzyme [Clostridium acetobutylicum EA 2018]
          Length = 337

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 71/231 (30%), Gaps = 35/231 (15%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P   +  + +S+Q GC   C FC         N+T  ++  Q+  A +L  +    E + 
Sbjct: 63  PLTKKWVVTMSTQYGCDSGCKFCDVPKVGKGVNVTYNDLKTQLEQALNLHPEIDRTERL- 121

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI-TLSTSGFVPN 227
                       NI    MGEP  N D V        + +     +  I  + T+     
Sbjct: 122 ------------NIHYARMGEPSWNND-VLDFTRNLKNIVKPYIGESLIHPVFTTMCPNK 168

Query: 228 IARVGEEI-------------GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
              +   I                L +S+++ + + R  +   N    L  +       P
Sbjct: 169 NKFLAHRINEWVDIKNNLFQGDAGLQLSINSTNENQRRDMFRGN-ALTLNEISSIGNDLP 227

Query: 275 GLSNARRITFEYVMLKGINDSPR-DALNLIKILKGIPAKINLIPFNPWPGC 324
                +     Y +   + D    DA  L K+       + + P +     
Sbjct: 228 MPKGRK-----YCLNFALADEYEVDAKVLKKLFDPSKFMVKITPLHKTVSS 273


>gi|168179167|ref|ZP_02613831.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum NCTC 2916]
 gi|226950612|ref|YP_002805703.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|182670116|gb|EDT82092.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum NCTC 2916]
 gi|226844506|gb|ACO87172.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 301

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 94/275 (34%), Gaps = 55/275 (20%)

Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151
            +  + R T C      C                  C+FC   T     N  A E + + 
Sbjct: 48  IMFFEERCTACGICVKRCPQKVITMKNNIPMVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-IASDSMGL 210
           L ++ ++ +    E                +   G GEP+ + D     ++ I  +    
Sbjct: 106 LTSQEIIKEIIKDEVFYEQSGGG-------VTFSG-GEPMLHAD----FINGILEECKAR 153

Query: 211 SFSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
                  T+ TSG+V      +V +++ + L   L +++N++      +     +   ++
Sbjct: 154 GI---HTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLE 208

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYL 327
               Y        I     ++K +ND+ ++    IK +  +   ++NL+P++     +Y 
Sbjct: 209 LLSKY-----GHNIYLRIPIIKDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYK 263

Query: 328 C------------SDQKDIVTFSECIKRSGYSSPI 350
                           + +   +E  K++G    I
Sbjct: 264 RLKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298


>gi|295105390|emb|CBL02934.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Faecalibacterium
           prausnitzii SL3/3]
          Length = 486

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 76/204 (37%), Gaps = 24/204 (11%)

Query: 110 EKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165
            K+R T    LC+     C+L+CS+C+    +   +             R+L+    G  
Sbjct: 91  FKNRNTVVKALCLHVAHSCNLSCSYCFASQGRYHGD-------------RALMSFEVGKR 137

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
            ++ ++  S  R+   +   G GEPL NF+ VKK ++   +   +     R T++T+G +
Sbjct: 138 AMDFLIENSGTRRNLEVDFFG-GEPLMNFEMVKKLVAYCREQEKIHNKNFRFTMTTNGVL 196

Query: 226 ---PNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
                I    +E   V+L++      ND     V        + ++   + +      + 
Sbjct: 197 IDDDVIDFCNKECHNVVLSLDGRKEVND--RFRVDCAGNGSYDRIVPKFQEFVKKRGDKN 254

Query: 282 ITFEYVMLKGINDSPRDALNLIKI 305
                       D   D  ++  +
Sbjct: 255 YYMRGTYTHFNTDFTNDIFHMADL 278


>gi|254976344|ref|ZP_05272816.1| putative radical SAM family protein [Clostridium difficile
           QCD-66c26]
 gi|255093729|ref|ZP_05323207.1| putative radical SAM family protein [Clostridium difficile CIP
           107932]
 gi|255101920|ref|ZP_05330897.1| putative radical SAM family protein [Clostridium difficile
           QCD-63q42]
 gi|255307789|ref|ZP_05351960.1| putative radical SAM family protein [Clostridium difficile ATCC
           43255]
 gi|255315481|ref|ZP_05357064.1| putative radical SAM family protein [Clostridium difficile
           QCD-76w55]
 gi|255518144|ref|ZP_05385820.1| putative radical SAM family protein [Clostridium difficile
           QCD-97b34]
 gi|255651260|ref|ZP_05398162.1| putative radical SAM family protein [Clostridium difficile
           QCD-37x79]
 gi|260684324|ref|YP_003215609.1| putative radical SAM family protein [Clostridium difficile CD196]
 gi|260687983|ref|YP_003219117.1| putative radical SAM family protein [Clostridium difficile R20291]
 gi|306521102|ref|ZP_07407449.1| putative radical SAM family protein [Clostridium difficile
           QCD-32g58]
 gi|260210487|emb|CBA64969.1| putative radical SAM family protein [Clostridium difficile CD196]
 gi|260214000|emb|CBE06119.1| putative radical SAM family protein [Clostridium difficile R20291]
          Length = 459

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 27/199 (13%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+             E        + L+    G   I+ ++  S
Sbjct: 95  ALCLNVAHDCNLKCKYCFAAQGDF-----GGE--------KELMSFEVGKAAIDYLIANS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV---PNI 228
             RK   I   G GEPL NF+ VK+ +            +    R T++T+G +     I
Sbjct: 142 GSRKNLEIDFFG-GEPLMNFEVVKQLVDYGRSVEKDYNKNI---RFTITTNGVLLNDEII 197

Query: 229 ARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EY 286
             + E +  V+L++      ND  N+   +N K   ++ +   +         +  +   
Sbjct: 198 DYINENMHNVVLSLDGRKEVND--NMRPTLNDKGSYDITLPRFKKLVEKRAKDKYYYIRG 255

Query: 287 VMLKGINDSPRDALNLIKI 305
              +   D  +D ++   +
Sbjct: 256 TFTRDNLDFSKDVMHFADL 274


>gi|153940128|ref|YP_001392535.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum F str. Langeland]
 gi|152936024|gb|ABS41522.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum F str. Langeland]
 gi|295320521|gb|ADG00899.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum F str. 230613]
          Length = 300

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 91/274 (33%), Gaps = 53/274 (19%)

Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151
            +  + R T C      C                  C+FC   T     N  A E + + 
Sbjct: 48  IMFFEERCTACGICVKRCPQKIITMKNNIPVVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L ++ ++ +    E                +   G GEP+ + D     ++   +     
Sbjct: 106 LTSQEIIKEIIKDEVFYEQSGGG-------VTFSG-GEPMLHAD----FINGILEE--CK 151

Query: 212 FSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
                 T+ TSG+V      +V +++ + L   L +++N++      +     +   ++ 
Sbjct: 152 VRGIHTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLEL 209

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYLC 328
              Y        I     ++  +ND+  +    IK +  +   ++NL+P++     +Y  
Sbjct: 210 LSKY-----GHNIYLRIPIINDVNDNNENIDETIKFISKLHLIQVNLLPYHKMGMDKYKR 264

Query: 329 ------------SDQKDIVTFSECIKRSGYSSPI 350
                          + +   +E  K++G    I
Sbjct: 265 LKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298


>gi|255656734|ref|ZP_05402143.1| putative radical SAM family protein [Clostridium difficile
           QCD-23m63]
 gi|296452437|ref|ZP_06894138.1| radical SAM domain protein [Clostridium difficile NAP08]
 gi|296877786|ref|ZP_06901812.1| radical SAM domain protein [Clostridium difficile NAP07]
 gi|296258767|gb|EFH05661.1| radical SAM domain protein [Clostridium difficile NAP08]
 gi|296431237|gb|EFH17058.1| radical SAM domain protein [Clostridium difficile NAP07]
          Length = 459

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 27/199 (13%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+             E        + L+    G   I+ ++  S
Sbjct: 95  ALCLNVAHDCNLKCKYCFAAQGDF-----GGE--------KELMSFEVGKAAIDYLIANS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV---PNI 228
             RK   I   G GEPL NF+ VK+ +            +    R T++T+G +     I
Sbjct: 142 GSRKNLEIDFFG-GEPLMNFEVVKQLVYYGRSVEKDYNKNI---RFTITTNGVLLNDEII 197

Query: 229 ARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EY 286
             + E +  V+L++      ND  N+   +N K   ++ +   +         +  +   
Sbjct: 198 DYINENMHNVVLSLDGRKEVND--NMRPTLNDKGSYDITLPRFKKLVEKRAKDKYYYIRG 255

Query: 287 VMLKGINDSPRDALNLIKI 305
              +   D  +D ++   +
Sbjct: 256 TFTRDNLDFSKDVMHFADL 274


>gi|303234218|ref|ZP_07320864.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna
           BVS033A4]
 gi|302494759|gb|EFL54519.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna
           BVS033A4]
          Length = 452

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 79/215 (36%), Gaps = 26/215 (12%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
              + IE     E     +C+     C+L C +C+        +             ++ 
Sbjct: 75  DDYLHIEDFKKREPVLKAMCLHVVHDCNLKCEYCFASQGDFGGH-------------KAY 121

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSK 214
           + +  G + ++ +V  S  RK   +   G GEPL +F+ VKK +      ++  G  F  
Sbjct: 122 MTEEVGKKALKYLVDNSGSRKFLEVDFFG-GEPLMDFELVKKLVKYGNEIAEEKGKKF-- 178

Query: 215 RRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            R T++T+G + +  ++         V+L++      ND  N+   +N K   ++++   
Sbjct: 179 -RFTITTNGVLLDDDKIDFINKNMHNVVLSLDGRKSVND--NMRKTLNDKGSYDLIVPKF 235

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           +        +         K   D   D  +   +
Sbjct: 236 QKLIKGRKGKYYYVRGTFTKKNLDFSEDVKHFKDL 270


>gi|299144022|ref|ZP_07037102.1| radical SAM domain protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518507|gb|EFI42246.1| radical SAM domain protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 448

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 97/266 (36%), Gaps = 48/266 (18%)

Query: 42  IYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV 101
           +Y +    +       + +R  +++   I   +  +   + D   K L +          
Sbjct: 45  LYKKYALKYDY-----ESIREAISE---INALKEDEVLFTED---KRLFK---------- 83

Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
               +Y P+     +C+     C+L C +C+                      R L+ + 
Sbjct: 84  ---PIYNPDNIVKAMCLHVAHDCNLRCKYCFASQGDFNG-------------KRLLMDEE 127

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI-ASDSMGLSFSKRRITLS 220
            G + ++ ++  S  RK   +   G GEPL NF+ VKK +    ++    +    R T++
Sbjct: 128 TGKKALDFILKNSGNRKNLEVDFFG-GEPLMNFELVKKLVDYGRNEEKKYN-KHFRFTIT 185

Query: 221 TSGFV---PNIARVGEEIG-VMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
           T+G +     I  + E +  V+L++     V++ +R  +   ++K   ++++   +    
Sbjct: 186 TNGVLLRDDVIDYINENMDNVVLSLDGRKCVNDYMRPTI---SKKGSYDIIVPKFKKLVD 242

Query: 276 LSNARRITFEYVMLKGINDSPRDALN 301
               +             D  +D + 
Sbjct: 243 KRGDKDYYIRGTFTNENLDFSQDLME 268


>gi|302379699|ref|ZP_07268184.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312606|gb|EFK94602.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna
           ACS-171-V-Col3]
          Length = 452

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 79/215 (36%), Gaps = 26/215 (12%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
              + IE     E     +C+     C+L C +C+        +             ++ 
Sbjct: 75  DDYLHIEDFKKREPVLKAMCLHVVHDCNLKCEYCFASQGDFGGH-------------KAY 121

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSK 214
           + +  G + ++ +V  S  RK   +   G GEPL +F+ VKK +      ++  G  F  
Sbjct: 122 MTEEVGKKALKYLVDNSGSRKFLEVDFFG-GEPLMDFELVKKLVKYGNEIAEEKGKKF-- 178

Query: 215 RRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            R T++T+G + +  ++         V+L++      ND  N+   +N K   ++++   
Sbjct: 179 -RFTITTNGVLLDDDKIDFINKNMHNVVLSLDGRKSVND--NMRKTLNDKGSYDLIVPKF 235

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           +        +         K   D   D  +   +
Sbjct: 236 QKLIKGRKGKYYYVRGTFTKKNLDFSEDVKHFKDL 270


>gi|303242022|ref|ZP_07328514.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302590440|gb|EFL60196.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 455

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 28/204 (13%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
                 LC+     C+L C +C+                    +A+SL+      + ++ 
Sbjct: 90  YNGIKALCLHVAHDCNLMCEYCFASKGSYK-------------VAKSLMPAEVAFKAVDF 136

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSKRRITLSTSGFV- 225
           +V  S  RK   I   G GEPL NFD +K+++       +  G +      T++T+G + 
Sbjct: 137 VVNNSGTRKNVEIDFFG-GEPLLNFDVIKQTVEYSKKVQERSGKNI---YFTITTNGTLL 192

Query: 226 --PNIARVGEEI-GVMLAISLHAVS-NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
               I  + E +  V+++I       + +R        K   + ++            + 
Sbjct: 193 DDEKIKYINENMNNVVISIDGRKEVHDAIR---YDAGHKGTYDKILKNALKLVEGRKGKS 249

Query: 282 ITFEYVMLKGINDSPRDALNLIKI 305
                       D  +D  +L  +
Sbjct: 250 YFIRGTFTSRNLDFSKDVFHLADL 273


>gi|169824972|ref|YP_001692583.1| arylsulfatase regulator [Finegoldia magna ATCC 29328]
 gi|167831777|dbj|BAG08693.1| arylsulfatase regulator [Finegoldia magna ATCC 29328]
          Length = 452

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 79/215 (36%), Gaps = 26/215 (12%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
              + IE     E     +C+     C+L C +C+        +             ++ 
Sbjct: 75  DDYLHIEDFKKREPVLKAMCLHVVHDCNLKCEYCFASQGDFGGH-------------KAY 121

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSK 214
           + +  G + ++ +V  S  RK   +   G GEPL +F+ VKK +      ++  G  F  
Sbjct: 122 MTEEVGKKALKYLVDNSGSRKFLEVDFFG-GEPLMDFELVKKLVKYGNEIAEEKGKKF-- 178

Query: 215 RRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
            R T++T+G + +  ++         V+L++      ND  N+   +N K   ++++   
Sbjct: 179 -RFTITTNGVLLDDDKIDFINKNMHNVVLSLDGRKSVND--NMRKTLNDKGSYDLIVPKF 235

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           +        +         K   D   D  +   +
Sbjct: 236 QKLIKGRKGKYYYVRGTFTKKNLDFSEDVKHFKDL 270


>gi|251791924|ref|YP_003006644.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533311|gb|ACS96557.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
           aphrophilus NJ8700]
          Length = 246

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 88/249 (35%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              +T EE++ +V+  R  +    G              
Sbjct: 29  GCLMRCKYCHNRDTWDLHGGKE--VTVEELMKEVVSYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
                V    GE +   + V+              S     L T+GFV +    I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFRACKKE---GISTC---LDTNGFVRHYDHVIDELMD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              ++L + L  +++++  IL+ +  K  LE        Y    N  R+   YV++ G  
Sbjct: 123 VTDLVL-LDLKELNDEVHQILIGVPNKRTLE-----FAKYLQKRNQ-RVWVRYVVVPGYT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           DS  D   L K ++G+    K+ L+P++     ++                ++ +     
Sbjct: 176 DSDNDIHLLGKFIEGMTNIEKVELLPYHRLGAHKWAAMGEKYELEDVKPPTKESLEHIKT 235

Query: 340 CIKRSGYSS 348
            ++  G+  
Sbjct: 236 ILESYGHVV 244


>gi|260913766|ref|ZP_05920242.1| pyruvate formate-lyase 1-activating enzyme [Pasteurella dagmatis
           ATCC 43325]
 gi|260632305|gb|EEX50480.1| pyruvate formate-lyase 1-activating enzyme [Pasteurella dagmatis
           ATCC 43325]
          Length = 246

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 85/246 (34%), Gaps = 50/246 (20%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T      R +T EE++ +V+  R  +    G     G         +
Sbjct: 29  GCLMRCKYCHNRDTWDLHGGREITVEELMKEVVTYRHFMNASGGGVTASGGEAVLQAEFV 88

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238
            +                 K+       +G+        L T+GFV N   V +E+  V 
Sbjct: 89  RD---------------WFKACK----DVGI-----HTCLDTNGFVRNYDHVIDELIDVT 124

Query: 239 --LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             + + L  +++ +   L+ +  K  LE        Y    N   +   YV++ G  D+ 
Sbjct: 125 DLVLLDLKQLNDKIHQNLIGVPNKRTLE-----FAQYLAKRNQ-PVWIRYVVVPGYTDAD 178

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
            D   L   +K +    K+ L+P++     ++                ++ +      ++
Sbjct: 179 EDIHLLGNFIKDMKNIEKVELLPYHRLGAHKWEAMGEKYELENVSPPTKESLEHIKSILE 238

Query: 343 RSGYSS 348
             G+  
Sbjct: 239 GYGHIV 244


>gi|89897766|ref|YP_521253.1| hypothetical protein DSY5020 [Desulfitobacterium hafniense Y51]
 gi|219670914|ref|YP_002461349.1| radical SAM protein [Desulfitobacterium hafniense DCB-2]
 gi|89337214|dbj|BAE86809.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219541174|gb|ACL22913.1| Radical SAM domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 476

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 95/255 (37%), Gaps = 33/255 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C+     C+L C++C+ GT                   R L+    G + I+ ++  S
Sbjct: 112 AICLHVAHDCNLRCNYCFAGTGAFGGQ-------------RGLMDVATGKQAIDFVLEAS 158

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
             RK   +   G GEPL N+  VK+ +    ++        + T++T+  +    I    
Sbjct: 159 AHRKHCEVDFFG-GEPLLNYQMVKEVVRYGKEAAQAKGKTIKFTITTNAVLLSEEIQNFL 217

Query: 233 EEIGVMLAISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRI----TFEYV 287
           E+  + + +S+     ++ + + P  N +     +    + +             T+ Y 
Sbjct: 218 EQEDISVVLSIDG-RPEVHDRMRPYANGQGSYAQVAPRLQQFAAKRPESSPYAVGTYYYA 276

Query: 288 --MLKGIN-DSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIK 342
                  N D  +D  +L+ +  G+  +I+L P    P   Y     D  +I+   + + 
Sbjct: 277 RGTYTHYNLDFDQDVTHLLDL--GMK-QISLEPVVAQPSDPYAFQEGDLPEILKTYDRLG 333

Query: 343 RSGYSSPIRTPRGLD 357
               +   R  +G D
Sbjct: 334 EELLA---RRRKGED 345


>gi|160941098|ref|ZP_02088436.1| hypothetical protein CLOBOL_05992 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436047|gb|EDP13814.1| hypothetical protein CLOBOL_05992 [Clostridium bolteae ATCC
           BAA-613]
          Length = 482

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 71/195 (36%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ ++  S
Sbjct: 123 ALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 169

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             R+   +   G GEPL N+D VK+ +            K R TL+T+G + N   +   
Sbjct: 170 GNREHLEVDFFG-GEPLMNWDVVKRLVEYGRSQEEAHHKKFRFTLTTNGVLLNDEVMEFC 228

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      ND   +    N     ++++   + +                +
Sbjct: 229 NREMSNVVLSLDGRKDVNDK--MRPFRNGSGSYDLIVPKFQKFADSRKQMNYYVRGTFTR 286

Query: 291 GINDSPRDALNLIKI 305
              D   D L+   +
Sbjct: 287 NNLDFADDVLHYADL 301


>gi|260437940|ref|ZP_05791756.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876]
 gi|292809691|gb|EFF68896.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876]
          Length = 468

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 75/201 (37%), Gaps = 32/201 (15%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C+     C+L C +C+             E   +    R+L+    G + ++ +V  S
Sbjct: 97  AMCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSAEVGKKALDFLVANS 143

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-----RITLSTSGFV--PN 227
             R+   +   G GEPL NF  VK+ +       G    K      R T++T+G +    
Sbjct: 144 GKRRNLEVDFFG-GEPLMNFGVVKEIVE-----YGRQLEKEHDKLFRFTMTTNGVLLNDE 197

Query: 228 IARV--GEEIGVMLAISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITF 284
           +      E   V+L++       ++ +++ P  N +   ++++   +      N      
Sbjct: 198 VQEFVNKECGNVVLSVDGRK---EVHDMMRPFRNGQGSYDLIMPKFKKIADSRNQMNYYV 254

Query: 285 EYVMLKGINDSPRDALNLIKI 305
                    D  +D L+L  +
Sbjct: 255 RGTFTHNNLDFSKDVLSLADL 275


>gi|157374846|ref|YP_001473446.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sediminis
           HAW-EB3]
 gi|157317220|gb|ABV36318.1| (Formate-C-acetyltransferase)-activating enzyme [Shewanella
           sediminis HAW-EB3]
          Length = 246

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 84/247 (34%), Gaps = 52/247 (21%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T      R +  +E++ Q++  R      P  E   G V  S G  I
Sbjct: 29  GCLMRCQYCHNRDTWDLHGGREIEVDELMTQIISYR------PFLEASGGGVTASGGEAI 82

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGEEI 235
                +           + K+        G+        L T+GFV    P I  + +  
Sbjct: 83  LQAEFVS---------ALFKACK----KEGI-----HTCLDTNGFVRKHTPVIDELLDNT 124

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
            ++L + +  + +     L  ++    L+        Y      ++    YV++ G  D 
Sbjct: 125 DLVL-LDIKHIDDKRHIDLTKVSNHRTLQ-----FAEYLSKR-QQKTWVRYVVVGGFTDD 177

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECI 341
              A  L + +K +    K+ L+P++     ++                 + +    +  
Sbjct: 178 IPSAKRLAEFIKPMKNVEKVELLPYHELGKHKWEAMGEEYELNNISPPSSETMEQIKQVF 237

Query: 342 KRSGYSS 348
             +G ++
Sbjct: 238 IDAGINA 244


>gi|167749297|ref|ZP_02421424.1| hypothetical protein EUBSIR_00248 [Eubacterium siraeum DSM 15702]
 gi|167657742|gb|EDS01872.1| hypothetical protein EUBSIR_00248 [Eubacterium siraeum DSM 15702]
          Length = 457

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 93/263 (35%), Gaps = 31/263 (11%)

Query: 87  KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
           K L            +   + +    +  +C+     C+L C +C+  T     +     
Sbjct: 76  KMLF-----TEDDYEQYAAMAMKAPIK-AMCLHVSHDCNLRCKYCFAQTGDFGGD----- 124

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
                   R L+    G + ++ ++  S  R+   +   G GEPL  +D V +++  A  
Sbjct: 125 --------RMLMKPETGKKAMDFLIKHSANRENLEVDFFG-GEPLMAWDTVVETVKYARS 175

Query: 207 SMGLSFSKRRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYP 262
                    R T++T+G + +  ++     E    +L++      ND  NI    N K  
Sbjct: 176 IEKQHGKNFRFTITTNGMLLDDEKIDYINKEMSNCVLSLDGRKEVND--NIRPTPNGKGS 233

Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322
            ++++   +        +         K   D   D L++  +  G   ++++ P    P
Sbjct: 234 YDIIVPKYQKLVAGRGTKDYYVRGTFTKYNLDFANDVLHISDL--GFE-QLSVEPVVTDP 290

Query: 323 GCEY--LCSDQKDIVTFSECIKR 343
              Y    SD   I    + +++
Sbjct: 291 EMPYAITESDLPTIFAEYDRLEK 313


>gi|218709044|ref|YP_002416665.1| pyruvate formate lyase-activating enzyme 1 [Vibrio splendidus
           LGP32]
 gi|218322063|emb|CAV18128.1| Pyruvate formate-lyase 1-activating enzyme [Vibrio splendidus
           LGP32]
          Length = 246

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 84/246 (34%), Gaps = 50/246 (20%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              +T EEI+ +    R  +    G     G        
Sbjct: 29  GCLMRCMYCHNRDTWELHDGKE--VTVEEIINEAKSYRHFMKASGGGITCSG-------- 78

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
                     GE +   + V+     A+ + G+        L T+G++     V +E  V
Sbjct: 79  ----------GEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTEVVDE--V 120

Query: 238 MLAISLHAVS-NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + A  L  +    +R+ +            +D  R+   +   ++    YV++ G  D+P
Sbjct: 121 LEASDLVMLDLKHMRDEIHHDFIGVSNRRTLDFARYLHKI--GKKTWIRYVIVPGYTDTP 178

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
            DA  L + +K +    K+ L+P++     ++                ++ +      + 
Sbjct: 179 EDAHLLGEFIKDMDNIEKVELLPYHKLGAHKWEALGHDYPLEGTNPPSKEKMDEIVAILS 238

Query: 343 RSGYSS 348
           +   + 
Sbjct: 239 QYHSNV 244


>gi|86148860|ref|ZP_01067118.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. MED222]
 gi|85833353|gb|EAQ51553.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. MED222]
          Length = 246

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 84/246 (34%), Gaps = 50/246 (20%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              +T EEI+ +    R  +    G     G        
Sbjct: 29  GCLMRCMYCHNRDTWDLHDGKE--VTVEEIINEAKSYRHFMKASGGGITCSG-------- 78

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
                     GE +   + V+     A+ + G+        L T+G++     V +E  V
Sbjct: 79  ----------GEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTEVVDE--V 120

Query: 238 MLAISLHAVS-NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + A  L  +    +R+ +            +D  R+   +   ++    YV++ G  D+P
Sbjct: 121 LEASDLVMLDLKHMRDEIHHDFIGVSNRRTLDFARYLHKI--GKKTWIRYVIVPGYTDTP 178

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
            DA  L + +K +    K+ L+P++     ++                ++ +      + 
Sbjct: 179 EDAHLLGEFIKDMDNIEKVELLPYHKLGAHKWEALGHDYPLEGTNPPSKEKMDEIVAILS 238

Query: 343 RSGYSS 348
           +   + 
Sbjct: 239 QYHSNV 244


>gi|291556614|emb|CBL33731.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium siraeum
           V10Sc8a]
          Length = 457

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 93/263 (35%), Gaps = 31/263 (11%)

Query: 87  KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
           K L            +   + +    +  +C+     C+L C +C+  T     +     
Sbjct: 76  KMLF-----TEDDYEQYAAMAMKAPIK-AMCLHVSHDCNLRCKYCFAQTGDFGGD----- 124

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
                   R L+    G + ++ ++  S  R+   +   G GEPL  +D V +++  A  
Sbjct: 125 --------RMLMKPETGKKAMDFLIKHSANRENLEVDFFG-GEPLMAWDTVVETVKYARS 175

Query: 207 SMGLSFSKRRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYP 262
                    R T++T+G + +  ++     E    +L++      ND  NI    N K  
Sbjct: 176 IEKQHGKNFRFTITTNGMLLDDEKIDYINKEMSNCVLSLDGRKEVND--NIRPTPNGKGS 233

Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322
            ++++   +        +         K   D   D L++  +  G   ++++ P    P
Sbjct: 234 YDIIVPKYQKLVAGRGTKDYYVRGTFTKYNLDFANDVLHISDL--GFE-QLSVEPVVTDP 290

Query: 323 GCEY--LCSDQKDIVTFSECIKR 343
              Y    SD   I    + +++
Sbjct: 291 EMPYAITESDLPTIFAEYDRLEK 313


>gi|90412861|ref|ZP_01220861.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium
           profundum 3TCK]
 gi|90326220|gb|EAS42647.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium
           profundum 3TCK]
          Length = 246

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 80/243 (32%), Gaps = 44/243 (18%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T      R ++ EEI+ + +  R  +    G     G         I
Sbjct: 29  GCLMRCQYCHNRDTWDLHDGREVSVEEIMKEAVSYRHFMKASGGGVTASGGEAMLQPEFI 88

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
            +       E           +    D+ G    K             I  V +    ++
Sbjct: 89  RDFFRAAQAEG----------IHTCLDTNGY-IRKH---------TDVIDEVLDATD-LV 127

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            + L  + + +   LV ++ K     ++D  R+       ++    YV++ G  D  + A
Sbjct: 128 MLDLKQMDDTVHQELVGVSNK----RVLDFARYL--HKRGQKTWIRYVIVPGYTDDEQSA 181

Query: 300 LNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSG 345
            NL   +K +    KI L+P++     ++                ++ +    E I   G
Sbjct: 182 HNLGAFIKDMDNIEKIELLPYHQLGEHKWDAMGYDYPLSGVQPPSKETMEKMKEIISSYG 241

Query: 346 YSS 348
           +  
Sbjct: 242 HKV 244


>gi|163802103|ref|ZP_02195999.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. AND4]
 gi|159174244|gb|EDP59052.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. AND4]
          Length = 246

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 81/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EEI+ +    R  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDTHDGKE--VTVEEIIAEAKTYRHFMNASGGGITCSG-------- 78

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
                     GE +   + V+     A              L T+G+V      I  V +
Sbjct: 79  ----------GEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYVRKHTEVIDEVLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  + ++     + ++ +     ++D  R+   +   ++    YV++ G  
Sbjct: 123 ATD-LVMLDLKHMKDETHQEFIGVSNR----RVLDFARYLHKV--GQKTWIRYVVVPGYT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D P  A  L + ++ +    K+ L+P++     ++                ++ +     
Sbjct: 176 DEPEAAHMLGEFIENMDNIEKVELLPYHKLGAHKWEALGIEYPLEGVNPPSKETMDEIQS 235

Query: 340 CIKRSGYSS 348
            + +   + 
Sbjct: 236 ILSQYHPNV 244


>gi|289804622|ref|ZP_06535251.1| ribosomal RNA large subunit methyltransferase N [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 39

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQE 379
              G+++ +R  RG DI AACGQL      R  +  R+ 
Sbjct: 1   MSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKR 39


>gi|24374440|ref|NP_718483.1| pyruvate formate lyase-activating enzyme 1 [Shewanella oneidensis
           MR-1]
 gi|24349016|gb|AAN55927.1|AE015730_4 pyruvate formate-lyase 1 activating enzyme [Shewanella oneidensis
           MR-1]
          Length = 246

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +  +E++ Q++  R      P  +   G V  S G 
Sbjct: 29  GCLMRCQYCHNRDTWDLDGGKE--VQVDELMSQIISYR------PFLDASNGGVTASGGE 80

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            I     +           + K+        G+        L T+GFV    P I  + +
Sbjct: 81  AILQAEFVA---------ELFKACK----KEGI-----HTCLDTNGFVRKYTPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              ++L + +  +++D    L  ++    L+        Y    N       YV++ G  
Sbjct: 123 HTDLVL-LDIKQMNDDKHIELTKVSNHRTLQ-----FAEYLAKRNQ-PTWIRYVVVGGFT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D    AL L + +K +    K+ L+P++     ++                ++ +     
Sbjct: 176 DDEASALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGESYQLDGVAPPSRETMEKIKA 235

Query: 340 CIKRSGYSS 348
                G ++
Sbjct: 236 VFSSQGINA 244


>gi|291087012|ref|ZP_06345142.2| radical SAM domain protein [Clostridium sp. M62/1]
 gi|291076635|gb|EFE13999.1| radical SAM domain protein [Clostridium sp. M62/1]
          Length = 462

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 82/227 (36%), Gaps = 27/227 (11%)

Query: 108 IPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           I  K R T    LC+     C+L C +C+             E        R  L  +  
Sbjct: 83  IDFKKRKTVVKALCLHIAHDCNLACRYCFAEE---------GE-----YHGRRALMTYEV 128

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
            +     ++ + G +I+  V    GEPL N+D VK+ ++           K R TL+T+G
Sbjct: 129 GKKALDFLVANSGNRINLEVDFFGGEPLMNWDVVKQLVAYGRSLEKPHNKKFRFTLTTNG 188

Query: 224 FV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
            +    I      E   V+L++      ND   +    N K   ++++   + +  L   
Sbjct: 189 VLLNDEIMEFCNKEMSNVVLSLDGRKEVND--RMRPFRNGKGSYDLIVPKFQKFAKLRAD 246

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           R         +   D   D L+   +  G   K+++ P    P   Y
Sbjct: 247 RDYFVRGTFTRNNLDFADDVLHFADL--GFE-KMSIEPVVAAPEEPY 290


>gi|197303668|ref|ZP_03168705.1| hypothetical protein RUMLAC_02395 [Ruminococcus lactaris ATCC
           29176]
 gi|197297188|gb|EDY31751.1| hypothetical protein RUMLAC_02395 [Ruminococcus lactaris ATCC
           29176]
          Length = 464

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ +V  S
Sbjct: 107 ALCLHIAHDCNLACQYCFAEE---------GEYHGR----RALMSYEVGKKALDFLVANS 153

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231
             R+   +   G GEPL N+  VK+ ++   +         R TL+T+G +    +    
Sbjct: 154 GSRRNLEVDFFG-GEPLMNWKVVKELVAYGRELEKQYDKHFRFTLTTNGVLLNEEVQEFV 212

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      ND   +    N K   ++++   +      N ++        +
Sbjct: 213 NREMDNVVLSLDGRKEVND--RMRPFRNGKGSYDLIVPKFQKLAESRNQQKYYIRGTFTR 270

Query: 291 GINDSPRDALNLIKI 305
              D  +D  +   +
Sbjct: 271 NNLDFSKDVEHFADL 285


>gi|307243816|ref|ZP_07525947.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
 gi|306492819|gb|EFM64841.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678]
          Length = 457

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 69/197 (35%), Gaps = 23/197 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+                        L+    G + ++ ++  S
Sbjct: 95  ALCLNVAHDCNLKCKYCFAKQGDFGG-------------KAELMPLEVGKKALDYLIANS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSKRRITLSTSGFVPNIAR- 230
             R+   I   G GEPL N+  VK+ +          G +    R T++T+G + +  + 
Sbjct: 142 GNRRNLEIDFFG-GEPLMNWPVVKELVKYGREVEKPAGKNI---RFTITTNGVLLDDEKI 197

Query: 231 -VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVM 288
               E    + +SL    +   ++   +N K   ++++   +         +  +     
Sbjct: 198 DFINEHMHNVVLSLDGRKDVNDSMRPTVNDKGSYDIIVPKFQKLVSQRPKDKYYYVRGTF 257

Query: 289 LKGINDSPRDALNLIKI 305
            +   D   D  +   +
Sbjct: 258 TRDNLDFSEDVKHFADL 274


>gi|325679260|ref|ZP_08158847.1| six-Cys-in-45 modification radical SAM protein [Ruminococcus albus
           8]
 gi|324109046|gb|EGC03275.1| six-Cys-in-45 modification radical SAM protein [Ruminococcus albus
           8]
          Length = 457

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 74/224 (33%), Gaps = 27/224 (12%)

Query: 87  KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
           K L             + +V  P K    +C+     C+L C +C+  T          E
Sbjct: 74  KILFSEDD---YEKFALASVASPIK---AMCLHVSHDCNLRCKYCFASTGDF------GE 121

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
                   R L+        I+ ++  S GRK   +   G GEP  NFD V K++  A  
Sbjct: 122 -------GRKLMDFETAKRAIDFLIEKSYGRKFLEVDFFG-GEPSMNFDVVMKTVEYARS 173

Query: 207 SMGLSFSKRRITLSTSG--FVPNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYP 262
                    R T +T+G     ++      E   V+L+I      ND   + V     Y 
Sbjct: 174 REKECDKVFRFTTTTNGMHLTDDMIDFINREMYNVVLSIDGRKEVNDRVRVRVDGTGCYD 233

Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGIN-DSPRDALNLIKI 305
           L  +    +         +  +        N D   D ++L  +
Sbjct: 234 L--ITKNFKRLVDKRGNDKDWYVRGTYTKYNLDFSEDVMHLYDL 275


>gi|119946914|ref|YP_944594.1| pyruvate formate lyase-activating enzyme 1 [Psychromonas ingrahamii
           37]
 gi|119865518|gb|ABM04995.1| pyruvate formate-lyase activating enzyme [Psychromonas ingrahamii
           37]
          Length = 246

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 56/246 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         ++ EE++ ++L  R  +    G   + G        
Sbjct: 29  GCLMRCQYCHNRDTWDTEAGKE--MSVEELMAELLQYRHYMEASGGGITVSG-------- 78

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI----ARVGE 233
                     GE +   +   K++  A    G+        L T+GFV  I      V +
Sbjct: 79  ----------GEAMLQPE-FIKAIFEACHLEGI-----HTCLDTNGFVRRIDDTVKSVLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              ++L + +  + ND    L  ++ KY LE       HY    +   +   YV+L G  
Sbjct: 123 HTDLVL-LDIKQMDNDKHIDLTHVSNKYTLE-----FAHYLAERHQ-AVYLRYVVLPGYT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D+  D   L K +K +    KI L+P++     ++                ++ +    E
Sbjct: 176 DAIDDIHALGKFIKPMKNIEKIELLPYHELGKHKWTAMGEIYPLDGVSPPTRESMDKIKE 235

Query: 340 CIKRSG 345
            + +  
Sbjct: 236 ILLQYH 241


>gi|254508526|ref|ZP_05120644.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           16]
 gi|219548551|gb|EED25558.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus
           16]
          Length = 220

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 78/249 (31%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T +EI+ +    R  +    G              
Sbjct: 3   GCLMRCMYCHNRDTWDTHGGKE--VTVDEIINEAKSYRHFMNASGGG------------- 47

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
                V    GE +   + V+     A              L T+G++      I  V E
Sbjct: 48  -----VTCSGGEAMLQPEFVRDFFRAAQSE------GIHTCLDTNGYIRKHTDVIDEVLE 96

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              +++    H       + +   N++      +D  R+   L   ++    YV++ G  
Sbjct: 97  ATDLVMLDLKHMKDEIHHDFIGVSNKR-----TLDFARYLHKL--GQKTWIRYVVVPGYT 149

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D    A  L + +K +    KI L+P++     ++                ++ +     
Sbjct: 150 DDEEAAHMLGEFIKDMDNIEKIELLPYHKLGAHKWEALGHDYPLEGINPPSKETMDKIVS 209

Query: 340 CIKRSGYSS 348
            +++   + 
Sbjct: 210 ILEQYHSNV 218


>gi|255528600|ref|ZP_05395368.1| pyruvate formate-lyase activating enzyme [Clostridium
           carboxidivorans P7]
 gi|296185843|ref|ZP_06854249.1| pyruvate formate-lyase 1-activating enzyme [Clostridium
           carboxidivorans P7]
 gi|255507704|gb|EET84176.1| pyruvate formate-lyase activating enzyme [Clostridium
           carboxidivorans P7]
 gi|296049511|gb|EFG88939.1| pyruvate formate-lyase 1-activating enzyme [Clostridium
           carboxidivorans P7]
          Length = 240

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 92/264 (34%), Gaps = 47/264 (17%)

Query: 96  CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
            +G     E++ + +       V  Q GCSL C++C+                      +
Sbjct: 2   TLGKMHSFESMGLVDGPGIRTVVFMQ-GCSLRCAYCHNPD---------------TWNFQ 45

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
                 P     +        +    +   G GEPL   D + ++L       G+     
Sbjct: 46  GGTEITPEELVKKIARFKPYFKNGGGVTFSG-GEPLMQPDFLIETLK-LCKEQGI----- 98

Query: 216 RITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
             T+ T+G+     +  E +     + + +  V ++    LV  ++K   +  + A +  
Sbjct: 99  HTTIDTAGYGSG--KYDEILKYTDLVLLDIKHVDDNGYKNLVGQSKK-GFDEFLQAVQ-- 153

Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPW-------PGC 324
                  ++   +V++ GI DS      L  I+K I    K+ L+P++          G 
Sbjct: 154 ---KANTKLWIRHVVVPGITDSEEHIKRLASIIKSIKNVEKVELLPYHTLGVEKYNKMGI 210

Query: 325 EYLCS-----DQKDIVTFSECIKR 343
           EY  S      ++++    + + +
Sbjct: 211 EYKLSHIDSMSKEELDKLYKILNK 234


>gi|32033950|ref|ZP_00134206.1| COG1180: Pyruvate-formate lyase-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208509|ref|YP_001053734.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus
           pleuropneumoniae L20]
 gi|190150360|ref|YP_001968885.1| pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303251032|ref|ZP_07337218.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303253668|ref|ZP_07339806.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245946|ref|ZP_07528029.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307248080|ref|ZP_07530109.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307252674|ref|ZP_07534566.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307257082|ref|ZP_07538857.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259361|ref|ZP_07541088.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261519|ref|ZP_07543188.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263704|ref|ZP_07545312.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097301|gb|ABN74129.1| pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915491|gb|ACE61743.1| pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302647588|gb|EFL77806.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650042|gb|EFL80212.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306853165|gb|EFM85387.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855478|gb|EFM87652.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306859850|gb|EFM91871.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306864453|gb|EFM96361.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866597|gb|EFM98458.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868802|gb|EFN00610.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870958|gb|EFN02694.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 245

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 83/245 (33%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         ++ E+++ +V+  +  +    G     G        
Sbjct: 28  GCLMRCKYCHNRDTWDLDGGKE--ISVEDLMKEVVTYKHFMKATGGGVTASGGEAVLQME 85

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +    D+ G              + P +  + E    
Sbjct: 86  FVRDWFRACKAEG----------IDTCLDTNGF----------VRHYSPVVDEMLEVTD- 124

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++++   L+ ++ K      +D  R+   L+   R    YV++ G  D   
Sbjct: 125 LVMLDLKQLNDEIHQDLIGVSNK----RTLDFARYLQKLNK--RTWIRYVVVPGYTDDDD 178

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343
            A  L + ++G+    K+ L+P++     ++                ++ +      I+ 
Sbjct: 179 SAHRLGQFIQGMQNIEKVELLPYHRLGAHKWETLGYKYELEGVLPPPKETMDRLKAIIES 238

Query: 344 SGYSS 348
            G++ 
Sbjct: 239 YGHTV 243


>gi|253990313|ref|YP_003041669.1| pyruvate formate lyase-activating enzyme 1 [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781763|emb|CAQ84926.1| pyruvate formate lyase activating enzyme 1 [Photorhabdus
           asymbiotica]
          Length = 246

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 76/245 (31%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +        ++T EE++ +    R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGK--DVTVEELIKEATTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +    D+ G              + P I  + +    
Sbjct: 87  FVRDWFRACRAEG----------IHTCLDTNGF----------VRRYDPVIDELMDVTD- 125

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++++   LV ++    LE        Y    N  +    YV++ G +D   
Sbjct: 126 LVMLDLKQINDEIHQKLVGVSNHRTLE-----FARYLTKRNQ-KTWIRYVVVPGWSDDDE 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
            A  L +    +    KI L+P++     ++                ++ +      ++ 
Sbjct: 180 SAHRLGEFTSDMKNIEKIELLPYHELGKHKWTTMGEEYQLEGVKPPAKETMERVKNILES 239

Query: 344 SGYSS 348
            G+  
Sbjct: 240 YGHKV 244


>gi|261494073|ref|ZP_05990576.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496086|ref|ZP_05992496.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308336|gb|EEY09629.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310239|gb|EEY11439.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 246

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 85/245 (34%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V   +  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDLDGGKE--ITVEELMKEVTTYKHFMKATGGGVTASGGEAVLQME 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           ++   D+ G              + P +  + E   +
Sbjct: 87  FVRDWFRACKAEG----------INTCLDTNGF----------VRHYSPVVDEMLEVTDL 126

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +L + L  +++++   LV ++ K      +D  R+   L+        YV++ G  D   
Sbjct: 127 VL-LDLKQLNDEVHQDLVGVSNK----RTLDFARYLHKLNK--PTWVRYVVVPGYTDDDD 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343
            A  L + ++G+    K+ L+P++     ++                ++D+    + I+ 
Sbjct: 180 SAHRLGQFIQGMDNIEKVELLPYHRLGAHKWETLGYKYELEGVMPPSKEDLERIQKIIES 239

Query: 344 SGYSS 348
            G++ 
Sbjct: 240 YGHTV 244


>gi|37525557|ref|NP_928901.1| pyruvate formate lyase-activating enzyme 1 [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784985|emb|CAE13905.1| pyruvate formate-lyase 1 activating enzyme (PFL-activating enzyme)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 246

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +        ++T EE++ +    R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGK--DVTVEELIKEATAYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A  + G+        L T+GFV    P I  + +
Sbjct: 74  -----VTASGGEAVLQAEFVRDWFR-ACHAEGI-----HTCLDTNGFVRRYGPVIDELMD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  +    YV++ G +
Sbjct: 123 ATD-LVMLDLKQLNDEIHQKLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +    +    KI L+P++     ++                ++ +     
Sbjct: 176 DDNESAHKLGEFTNDMKNIEKIELLPYHELGKHKWTTMGEKYQLEGVKPPAKETMERVKN 235

Query: 340 CIKRSGYSS 348
            ++  G+  
Sbjct: 236 ILESYGHKV 244


>gi|302385029|ref|YP_003820851.1| Radical SAM domain protein [Clostridium saccharolyticum WM1]
 gi|302195657|gb|ADL03228.1| Radical SAM domain protein [Clostridium saccharolyticum WM1]
          Length = 464

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ ++  S
Sbjct: 107 ALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSFEVGKKALDFLIANS 153

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231
             R+   +   G GEPL N+D VK+ +              R T++T+G +    I    
Sbjct: 154 GNRRNLEVDFFG-GEPLMNWDVVKQLVEYGRKKEKEYNKNFRFTMTTNGVLLNDEIMEFC 212

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      ND   +    + K   ++++   + +  L   +         +
Sbjct: 213 NREMSNVVLSLDGRKEVND--RMRPFRSGKGSYDLIVPKFQKFAQLRGTKDYYIRGTFTR 270

Query: 291 GINDSPRDALNLIKI 305
              D  +D L    +
Sbjct: 271 QNMDFAKDVLEFADL 285


>gi|297579388|ref|ZP_06941316.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae RC385]
 gi|297536982|gb|EFH75815.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae RC385]
          Length = 246

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 85/250 (34%), Gaps = 58/250 (23%)

Query: 123 GCSLTCSFCY------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           GC   C +C+      T T    R +T EEI+ +    R  +    G     G       
Sbjct: 29  GCLFRCKYCHNRDTWDTHTG---REVTVEEIIKEAKSYRHFMNASGGGITCSG------- 78

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVG 232
                      GE +   + V+     A              L T+G+V    P I  V 
Sbjct: 79  -----------GEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYVRKFTPVIDEVL 121

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E    ++ + +  + +++   L+ ++ K      +D  R+   +   ++    YV++ G 
Sbjct: 122 EVTD-LVMLDIKQMDDEIHQDLIGVSNK----RTLDFARYLHQI--GQKTWLRYVVVPGY 174

Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFS 338
            D    A  L + +K +    KI L+P++     ++                ++ +    
Sbjct: 175 TDDEASAHQLGEFIKDMKNIEKIELLPYHKLGAHKWEAMGEEYPLEGVNPPSKETMDKIV 234

Query: 339 ECIKRSGYSS 348
             +++   + 
Sbjct: 235 AILEQYHSNV 244


>gi|323703288|ref|ZP_08114939.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531753|gb|EGB21641.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 450

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 83/215 (38%), Gaps = 21/215 (9%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+ +   C+L C +C+ G               Q      LL +  G   I+ ++  S
Sbjct: 92  ALCLHAAHDCNLRCRYCFAGQ-------------GQFGGPSGLLSEEVGRAAIDFLIEQS 138

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
             RK   I   G GEPL NF  +K+ +         +  K + TL+T+G +    + +  
Sbjct: 139 GNRKHVEIDFFG-GEPLLNFKVIKELVPYGRQKAEQAGKKIKFTLTTNGVLLNQEVQQFL 197

Query: 233 EEIGVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
            +  +   +SL     ++ N + P  + K   +M++   + Y     A          + 
Sbjct: 198 IDNDMAAVLSLDG-RPEVHNAMRPAPSGKGSYDMVVKHFQEYVQRQPAAGYYIRGTFTRH 256

Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
             D  +D L++ ++  G    +++ P       +Y
Sbjct: 257 NLDFSQDVLHMAEL--GFK-DVSVEPVVAGNDTDY 288


>gi|120598447|ref|YP_963021.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. W3-18-1]
 gi|146293475|ref|YP_001183899.1| pyruvate formate lyase-activating enzyme 1 [Shewanella putrefaciens
           CN-32]
 gi|120558540|gb|ABM24467.1| pyruvate formate-lyase activating enzyme [Shewanella sp. W3-18-1]
 gi|145565165|gb|ABP76100.1| pyruvate formate-lyase activating enzyme [Shewanella putrefaciens
           CN-32]
 gi|319426779|gb|ADV54853.1| pyruvate formate-lyase activating enzyme [Shewanella putrefaciens
           200]
          Length = 246

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +  +E++ Q++  R      P  +   G V  S G 
Sbjct: 29  GCLMRCQYCHNRDTWDLDGGKE--VQVDELMSQIISYR------PFLDASNGGVTASGGE 80

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            I     +           + K+      + G         L T+GFV    P I  + +
Sbjct: 81  AILQAEFVA---------ELFKACK----NEG-----VHTCLDTNGFVRKYTPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              ++L + +  + ++    L  ++    L+        Y    N       YV++ G  
Sbjct: 123 HTDLVL-LDIKHMDDEKHIELTKVSNHRTLQ-----FAEYLAKRNQ-ATWIRYVVVGGFT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D    AL L + +K +    K+ L+P++     ++                ++ +     
Sbjct: 176 DDEASALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGENYQLDGVSPPSRETMEKIKA 235

Query: 340 CIKRSGYSS 348
              + G ++
Sbjct: 236 VFVQQGINA 244


>gi|307107693|gb|EFN55935.1| hypothetical protein CHLNCDRAFT_57698 [Chlorella variabilis]
          Length = 332

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 70/248 (28%), Gaps = 53/248 (21%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C FC         N     +       +         +        S G     I
Sbjct: 105 GCGLRCVFCS--------NPDTWHMA----RGKLTSSKDLAKKLERVKPYLSQGDHKGGI 152

Query: 183 VMMGMGEPLCNFD----NVKKS----LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
            + G GEPL   +     + ++    L+   D+ G                    +V   
Sbjct: 153 TISG-GEPLLQPEFTASVLMEAHTRGLTTCIDTTGQGMKHSHW-----------DKVLPH 200

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           +   L   + +   +    +    +  P    +D                 YVML G  D
Sbjct: 201 LDYALFC-IKSPIPEKYEWITKR-KIGPALGFVDELER-----RQIPYWLRYVMLPGKTD 253

Query: 295 SPRDALNLIKILKGIPAK--INLIPFN-------PWPGCEY-----LCSDQKDIVTFSEC 340
            P D   LI+  +   +   I ++P++          G EY          +++  F   
Sbjct: 254 QPEDVAALIQFCRNKRSMQAIEVLPYHLLGVEKWASEGKEYPLTGMSSPSAEEVNAFLAP 313

Query: 341 IKRSGYSS 348
           +K +G   
Sbjct: 314 LKEAGIPV 321


>gi|170754784|ref|YP_001782823.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum B1 str. Okra]
 gi|169119996|gb|ACA43832.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum B1 str. Okra]
          Length = 300

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 94/275 (34%), Gaps = 55/275 (20%)

Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151
            +  + R T C      C                  C+FC   T     N  A E + + 
Sbjct: 48  IMFFEERCTACGICVKRCPQKIITMKNNIPMVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-IASDSMGL 210
           L ++ ++ +    E                +   G GEP+ + D     ++ I  +    
Sbjct: 106 LTSQEIIKEIIKDEVFYEQSGGG-------VTFSG-GEPMLHAD----FINGILEECKTR 153

Query: 211 SFSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
                  T+ TSG+V      +V +++G+ L   L +++N++      +     +   ++
Sbjct: 154 GI---HTTIDTSGYVSWDKFEKVRDKVGLFL-YDLKSMNNEIHKKYTGVENTI-ILENLE 208

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYL 327
               Y        I     ++  +ND+ ++    IK +  +   ++NL+P++     +Y 
Sbjct: 209 LLSKY-----GHNIYLRIPIINDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYK 263

Query: 328 C------------SDQKDIVTFSECIKRSGYSSPI 350
                           + +   +E  K++G    I
Sbjct: 264 RLKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298


>gi|126174881|ref|YP_001051030.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
           OS155]
 gi|304411937|ref|ZP_07393548.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS183]
 gi|307303295|ref|ZP_07583050.1| pyruvate formate-lyase activating enzyme [Shewanella baltica BA175]
 gi|125998086|gb|ABN62161.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS155]
 gi|304349797|gb|EFM14204.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS183]
 gi|306913655|gb|EFN44077.1| pyruvate formate-lyase activating enzyme [Shewanella baltica BA175]
          Length = 246

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 75/245 (30%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +  +E++ Q++  R  L    G     G        
Sbjct: 29  GCLMRCQYCHNRDTWDLDGGKE--VLVDELMSQIISYRPFLDASNGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            ++ +      E           +    D+ G              + P I  + +   +
Sbjct: 87  FVAELFTACQQEG----------IHTCLDTNGF----------VRKYTPVIDELLDHTDL 126

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +L + +  + ++    L  ++    L+        Y    N       YV++ G  D   
Sbjct: 127 VL-LDIKHMDDEKHIELTKVSNHRTLQ-----FAQYLAERNQ-ATWIRYVVVGGFTDDEA 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343
            AL L + +K +    K+ L+P++     ++                ++ +         
Sbjct: 180 SALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGESYQLDGISPPSRETMEKIKAVFVG 239

Query: 344 SGYSS 348
            G ++
Sbjct: 240 QGINA 244


>gi|256028011|ref|ZP_05441845.1| Fe-S oxidoreductase [Fusobacterium sp. D11]
 gi|260495719|ref|ZP_05815841.1| iron-sulfur dehydrogenase [Fusobacterium sp. 3_1_33]
 gi|289765954|ref|ZP_06525332.1| fe-s oxidoreductase [Fusobacterium sp. D11]
 gi|260196677|gb|EEW94202.1| iron-sulfur dehydrogenase [Fusobacterium sp. 3_1_33]
 gi|289717509|gb|EFD81521.1| fe-s oxidoreductase [Fusobacterium sp. D11]
          Length = 284

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 83/237 (35%), Gaps = 38/237 (16%)

Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           C+L C FC    T   +L R       EIL ++      +                    
Sbjct: 28  CNLNCIFCECGATKKIQLKRQRFKDMNEILNEIQSVLKDIKPDY---------------- 71

Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
              +   G GEP  + D  N+ K++       G      +I L T+  +    +V +E+ 
Sbjct: 72  ---VTFSGSGEPTLSLDLGNISKAIKKDLKFKG------KICLITNSLLLADKQVIKELE 122

Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              ++  +L+ +  D+   +V  + +  ++ +     +    +   +I  E  +L+ IND
Sbjct: 123 YIDLIIPTLNTLKQDIFEKIVRPDYRTSVDEIRKGFINLNDSNYKGKIWIEIFILENIND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347
           S  + + +   L     + + I  N         +        I+   + ++ +G  
Sbjct: 183 SEENFIEIANFLNSENIRYDKIQLNTIDRVGAERDLKAISFDKILKAKKILEENGLH 239


>gi|306820795|ref|ZP_07454420.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551185|gb|EFM39151.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 457

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 18/153 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C+     C+L CS+C+        +             + ++    G + ++ +V  S
Sbjct: 96  AMCLHVAHDCNLRCSYCFASQGDFGGD-------------KEIMSLEVGKKALDYLVEHS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231
             R+   +   G GEPL NF+ VK+ +   +   G      R T++T+G +     I  +
Sbjct: 143 GNRRNLEVDFFG-GEPLMNFEVVKQLVDYGNKIAGEKNKNFRFTITTNGVLLSDDKIEYI 201

Query: 232 GEEIG-VMLAISLHAVSNDLRNILVPINRKYPL 263
            E +  V+L++      ND    L+     Y L
Sbjct: 202 NENMHNVVLSLDGRKEINDANRPLINGKGSYDL 234


>gi|218546617|gb|ACK98957.1| predicted Fe-S-cluster redox enzyme [Aeromonas sobria]
          Length = 46

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 346 YSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
            +  +R  RG DI AACGQL      R  +  +  MQ  G
Sbjct: 1   LTVIVRKTRGDDIDAACGQLVGEVIDRTKRTMKNRMQQDG 40


>gi|322515207|ref|ZP_08068206.1| pyruvate formate-lyase activating enzyme [Actinobacillus ureae ATCC
           25976]
 gi|322118817|gb|EFX91018.1| pyruvate formate-lyase activating enzyme [Actinobacillus ureae ATCC
           25976]
          Length = 245

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 81/248 (32%), Gaps = 54/248 (21%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+       R+                          E +      +     
Sbjct: 28  GCLMRCKYCH------NRDT---------WDLDGGKEISVEYLMKEVVTYKHFMKATGGG 72

Query: 183 VMMGMGEPLCNFDNV--------KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
           V    GE +   + V         + +    D+ G              + P +  + E 
Sbjct: 73  VTASGGEAVLQMEFVRDWFRACKVEGIDTCLDTNGF----------VRHYSPVVDEMLEV 122

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              ++ + L  +++++   L+ ++ K      +D  R+   L+   R    YV++ G  D
Sbjct: 123 TD-LVMLDLKQLNDEIHQDLIGVSNK----RTLDFARYLQKLNK--RTWVRYVVVPGYTD 175

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
               A  L + ++G+    K+ L+P++     ++                ++D+    + 
Sbjct: 176 DDDSAHRLGQFIQGMQNIEKVELLPYHRLGAHKWETLGYKYELDGVLPPPKEDLERIQKI 235

Query: 341 IKRSGYSS 348
           I+  G++ 
Sbjct: 236 IESYGHTV 243


>gi|154498075|ref|ZP_02036453.1| hypothetical protein BACCAP_02056 [Bacteroides capillosus ATCC
           29799]
 gi|150273065|gb|EDN00222.1| hypothetical protein BACCAP_02056 [Bacteroides capillosus ATCC
           29799]
          Length = 460

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 78/246 (31%), Gaps = 32/246 (13%)

Query: 89  LLRFPARCIGGPVEIETVYI-PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
           LL      I        V +  E     LC+     C+L C +C+  T            
Sbjct: 80  LLFVEDDYIDPAA---AVAMQREAPIKALCLHVSHDCNLRCKYCFASTGDF----GTGH- 131

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
                  R  +        I+ ++  S  R+   +   G GEPL   D VK+++  A   
Sbjct: 132 -------RMTMDFETAKRAIDFVIERSGKRRNIEVDFFG-GEPLMAMDTVKRTVEYARSI 183

Query: 208 MGLSFSKRRITLSTSGF------VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261
                   R T++T+G       +  I R  E    +L+I      ND   +   +N K 
Sbjct: 184 EKEHGKCFRFTITTNGVLLNDENIEYINR--EMSNAVLSIDGRKEVND--RMRPTVNGKG 239

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI-LKGIPAKINLIPFNP 320
             ++++   R        +         +   D   D +++  +  K I       P   
Sbjct: 240 SYDVIVPKFRKLIAGRGDKDYYLRGTFTRDNLDFAGDVMHMASLGAKNISV----EPVVG 295

Query: 321 WPGCEY 326
            P   Y
Sbjct: 296 GPEDPY 301


>gi|113969835|ref|YP_733628.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. MR-4]
 gi|113884519|gb|ABI38571.1| pyruvate formate-lyase activating enzyme [Shewanella sp. MR-4]
          Length = 246

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +  +E++ Q++  R      P  +   G V  S G 
Sbjct: 29  GCLMRCQYCHNRDTWDLDGGKE--VQVDELMSQIISYR------PFLDASNGGVTASGGE 80

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            I     +           + K+        G+        L T+GFV    P I  + +
Sbjct: 81  AILQAEFVA---------ELFKACK----KEGI-----HTCLDTNGFVRKYTPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              ++L + +  +++D    L  ++    L+        Y    N       YV++ G  
Sbjct: 123 NTDLVL-LDIKQMNDDKHIELTKVSNHRTLQ-----FAEYLAKRNQ-PTWIRYVVVGGFT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D    AL L + +K +    K+ L+P++     ++                +  +     
Sbjct: 176 DDEASALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGESYQLDGVAPPSRDTMEKIKA 235

Query: 340 CIKRSGYSS 348
                G ++
Sbjct: 236 VFSSQGINA 244


>gi|114047065|ref|YP_737615.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. MR-7]
 gi|113888507|gb|ABI42558.1| pyruvate formate-lyase activating enzyme [Shewanella sp. MR-7]
          Length = 246

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +  +E++ Q++  R      P  +   G V  S G 
Sbjct: 29  GCLMRCQYCHNRDTWDLDGGKE--VQVDELMSQIISYR------PFLDASNGGVTASGGE 80

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            I     +           + K+        G+        L T+GFV    P I  + +
Sbjct: 81  AILQAEFVA---------ELFKACK----KEGI-----HTCLDTNGFVRKYTPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              ++L + +  +++D    L  ++    L+        Y    N       YV++ G  
Sbjct: 123 NTDLVL-LDIKQMNDDKHIELTKVSNHRTLQ-----FAEYLAKRNQ-PTWIRYVVVGGFT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D    AL L + +K +    K+ L+P++     ++                +  +     
Sbjct: 176 DDEASALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGESYQLDGVAPPSRDTMEKIKA 235

Query: 340 CIKRSGYSS 348
                G ++
Sbjct: 236 VFSSQGINA 244


>gi|117920002|ref|YP_869194.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. ANA-3]
 gi|117612334|gb|ABK47788.1| pyruvate formate-lyase activating enzyme [Shewanella sp. ANA-3]
          Length = 246

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +  +E++ Q++  R      P  +   G V  S G 
Sbjct: 29  GCLMRCQYCHNRDTWDLDGGKE--VQVDELMSQIISYR------PFLDASNGGVTASGGE 80

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            I     +           + K+        G+        L T+GFV    P I  + +
Sbjct: 81  AILQAEFVA---------ELFKACK----KEGI-----HTCLDTNGFVRKYTPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              ++L + +  +++D    L  ++    L+        Y    N       YV++ G  
Sbjct: 123 NTDLVL-LDIKQMNDDKHIELTKVSNHRTLQ-----FAEYLAKRNQ-PTWIRYVVVGGFT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D    AL L + +K +    K+ L+P++     ++                +  +     
Sbjct: 176 DDEASALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGETYQLDGVAPPSRDTMEKIKA 235

Query: 340 CIKRSGYSS 348
                G ++
Sbjct: 236 VFSSQGINA 244


>gi|225569142|ref|ZP_03778167.1| hypothetical protein CLOHYLEM_05222 [Clostridium hylemonae DSM
           15053]
 gi|225161941|gb|EEG74560.1| hypothetical protein CLOHYLEM_05222 [Clostridium hylemonae DSM
           15053]
          Length = 302

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 88/288 (30%), Gaps = 50/288 (17%)

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR-------- 140
           LL+            +   + +  R   C S  V C         G     R        
Sbjct: 28  LLKCLWCHNPETQCFKPQLLCDSERCAGCGSCAVVCPQNAVREEAGKMVTDRKLCTGCGT 87

Query: 141 -----NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
                NL   E+  +      L+ +    E         V      ++       + + D
Sbjct: 88  CVDSCNLNLREVAGKEYTVSELVKELRKDEMFYEESGGGVTLSGGEVM-------MADMD 140

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNI 253
            V++ +        +  S   + + T G  P  N  R+       L   +  + N++   
Sbjct: 141 YVEELVKRL---DRMGIS---VAIDTCGQAPYENFERLLPYTDTFL-YDIKTMDNEIHKK 193

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
            + +      E +++        S   RI     +++ +N +  D   +I+ L+    ++
Sbjct: 194 YMGMGN----EQILENLERIS--SKGARIYIRIPVIREVNGTKEDMEEIIRYLREKQIRV 247

Query: 314 ---NLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSGY 346
              NL+P++     +Y                 +++  F    K+SG+
Sbjct: 248 ANINLLPYHNTGSGKYEKLGLTYGGTKLHAPSGEEMEQFVTLFKQSGF 295


>gi|307250286|ref|ZP_07532239.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857668|gb|EFM89771.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 245

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 83/245 (33%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         ++ E+++ +V+  +  +    G     G        
Sbjct: 28  GCLMRCKYCHNRDTWDLDGGKE--ISVEDLMKEVVTYKHFMKATGGGVTASGGEAVLQME 85

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +    D+ G              + P +  + E    
Sbjct: 86  FVRDWFRACKAEG----------IDTCLDTNGF----------VRHYSPVVDEMLEVTD- 124

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++++   L+ ++ K      +D  R+   L+   R    YV++ G  D   
Sbjct: 125 LVMLDLKQLNDEIHQDLIGVSNK----RTLDFARYLQKLNK--RTWIRYVVVPGYTDDDD 178

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343
            A  L + ++G+    K+ L+P++     ++                ++ +      I+ 
Sbjct: 179 SAHRLGQFIQGMQNIEKVELLPYHRLGAHKWETLGYKYELEGVLPPPKEMMDRLKAIIES 238

Query: 344 SGYSS 348
            G++ 
Sbjct: 239 YGHTV 243


>gi|54309906|ref|YP_130926.1| pyruvate formate lyase-activating enzyme 1 [Photobacterium
           profundum SS9]
 gi|46914345|emb|CAG21124.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium
           profundum SS9]
          Length = 246

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T      R ++ EEI+ + +  R  +    G     G         I
Sbjct: 29  GCLMRCQYCHNRDTWDLHDGREISVEEIMKEAVSYRHFMKASGGGVTASGGEAMLQPEFI 88

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM- 238
            +       E   N       +    D+ G                 +   V E +    
Sbjct: 89  RDFFRAAQAE---N-------IHTCLDTNGY-------------IRKHTDVVDEVLDATD 125

Query: 239 -LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            + + L  + + +   LV ++ K     ++D  R+       ++    YV++ G  D  +
Sbjct: 126 LVMLDLKQMDDTIHQELVGVSNK----RVLDFARYL--HKRGQKTWIRYVIVPGYTDDEQ 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
            A NL   +K +    KI L+P++     ++                ++ +    E I  
Sbjct: 180 SAHNLGAFIKDMDNIEKIELLPYHQLGEHKWDAMGYDYPLSGVQPPSKETMEKMKEIISS 239

Query: 344 SGYSS 348
            G+  
Sbjct: 240 YGHKV 244


>gi|169350747|ref|ZP_02867685.1| hypothetical protein CLOSPI_01520 [Clostridium spiroforme DSM 1552]
 gi|169292610|gb|EDS74743.1| hypothetical protein CLOSPI_01520 [Clostridium spiroforme DSM 1552]
          Length = 461

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 68/198 (34%), Gaps = 26/198 (13%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L CS+C+    K        E        R+L+    G + ++ +V  S
Sbjct: 101 ALCLHVAHTCNLNCSYCFASQGKYK-----GE--------RALMSFEVGKQALDFLVENS 147

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV--PNIA 229
             R    +   G GEPL NF  VK  +            +F   R TL+T+G +    + 
Sbjct: 148 GTRHNLEVDFFG-GEPLMNFQVVKDLVAYARSIEKEKNKNF---RFTLTTNGMLIDDEVI 203

Query: 230 RVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
                E   V+L++      +D     V    K   E ++   +        +       
Sbjct: 204 EFANRECSNVVLSLDGRKEIHD--RYRVDYAGKGSWEKIVPKFQKLVEARGGKDYYMRGT 261

Query: 288 MLKGINDSPRDALNLIKI 305
                 D  +D   ++ +
Sbjct: 262 FTHANPDFLKDVQTMLDL 279


>gi|148977582|ref|ZP_01814161.1| pyruvate formate lyase activating enzyme 1 [Vibrionales bacterium
           SWAT-3]
 gi|145963233|gb|EDK28500.1| pyruvate formate lyase activating enzyme 1 [Vibrionales bacterium
           SWAT-3]
          Length = 246

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 85/246 (34%), Gaps = 50/246 (20%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              +T EEI+ +    R  +    G     G        
Sbjct: 29  GCLMRCMYCHNRDTWDLHDGKE--VTVEEIINEAKSYRHFMKASGGGITCSG-------- 78

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
                     GE +   + V+    +A+ + G+        L T+G++     V +E  V
Sbjct: 79  ----------GEAMLQPEFVRDFF-LAAKAEGI-----HTCLDTNGYIRKHTEVVDE--V 120

Query: 238 MLAISLHAVS-NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + A  L  +    +R+ +         +  +D  R+   +   +     YV++ G  D+P
Sbjct: 121 LDAADLVMLDLKHMRDEIHHDFIGVSNKRTLDFARYLHKI--GKTTWIRYVIVPGYTDTP 178

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
            DA  L + +K +    K+ L+P++     ++                ++ +      + 
Sbjct: 179 EDAHLLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLDYPLEGVNPPSKETMDEIVAVLS 238

Query: 343 RSGYSS 348
           +   + 
Sbjct: 239 QYHSNV 244


>gi|153931596|ref|YP_001385507.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153934810|ref|YP_001388913.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A str. Hall]
 gi|152927640|gb|ABS33140.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930724|gb|ABS36223.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum A str. Hall]
          Length = 300

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 91/274 (33%), Gaps = 53/274 (19%)

Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151
            +  + R T C      C                  C+FC   T     N  A E + + 
Sbjct: 48  IMFFEERCTACGICVKRCPQKIITMKNNIPVVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           L  + ++ +    E                +   G GEP+ + D     ++   +     
Sbjct: 106 LTPQEIIKEIIKDEVFYEQSSGG-------VTFSG-GEPMLHAD----FINGILEE--CK 151

Query: 212 FSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
                 T+ TSG+V      +V +++ + L   L +++N++      +     +   ++ 
Sbjct: 152 VRGIHTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLEL 209

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYLC 328
              Y        I     ++  +ND+ ++    IK +  +   ++NL+P++     +Y  
Sbjct: 210 LSKY-----GHNIYLRIPIINDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYKR 264

Query: 329 ------------SDQKDIVTFSECIKRSGYSSPI 350
                          + +   +E  K++G    I
Sbjct: 265 LKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298


>gi|256846200|ref|ZP_05551658.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_36A2]
 gi|256719759|gb|EEU33314.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_36A2]
          Length = 284

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 81/237 (34%), Gaps = 38/237 (16%)

Query: 124 CSLTCSFC---YTGTQKLVRNL--TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           C+L C FC    T   +L R       EIL ++      +                    
Sbjct: 28  CNLNCIFCECGATKKIQLERQSFKNINEILNEIQSVLKDIKPDY---------------- 71

Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
              I   G GEP  + D  N+ K++       G      +I L T+  +    +V  E+ 
Sbjct: 72  ---ITFSGSGEPTLSLDLGNISKAIKKDLKYKG------KICLITNSLLLADKQVINELE 122

Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              ++  +L+ ++ D+   +V  + K  ++ +     +    +    I  E  +L+ IND
Sbjct: 123 YIDLIIPTLNTLNQDIFEKIVRPDYKTNVDEIRKGFINLNNSNYKGEIWIEIFILENIND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347
           +  + + +   L     + + I  N         +        I+   + ++  G  
Sbjct: 183 NEENFIEIANFLNSENIRYDKIQLNTIDRVGAERDLKAISFDKILKAKKILEEYGLH 239


>gi|323492522|ref|ZP_08097670.1| pyruvate formate lyase-activating enzyme 1 [Vibrio brasiliensis LMG
           20546]
 gi|323313309|gb|EGA66425.1| pyruvate formate lyase-activating enzyme 1 [Vibrio brasiliensis LMG
           20546]
          Length = 246

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 77/249 (30%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EEI+ +    R  +    G              
Sbjct: 29  GCLMRCMYCHNRDTWDTHDGKE--VTVEEIINEAKSYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
                V    GE +   + V+     A              L T+G++      I  V +
Sbjct: 74  -----VTCSGGEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYIRKHTEVIDEVLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              +++    H       + +   N++      +D  R+   +   ++    YV++ G  
Sbjct: 123 ATDLVMLDLKHMKDEIHHDFIGVSNKR-----TLDFARYLHKI--GQKTWIRYVVVPGYT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D    A  L   +K +    KI L+P++     ++                ++ +     
Sbjct: 176 DDEEAAHMLGDFIKDMDNIEKIELLPYHKLGAHKWEALGIEYPLEGTNPPSKETMDNIVS 235

Query: 340 CIKRSGYSS 348
            +++   + 
Sbjct: 236 ILEQYHSNV 244


>gi|313906024|ref|ZP_07839377.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
 gi|313469137|gb|EFR64486.1| Radical SAM domain protein [Eubacterium cellulosolvens 6]
          Length = 474

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 36/203 (17%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            LC+     C+L C +C+    +    R +   E+               G + ++ +V 
Sbjct: 95  ALCLQIAHDCNLACRYCFAEEGEYHGKRGMMTFEV---------------GKKALDFVVA 139

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF-----SKRRITLSTSGFVPN 227
            S  RK   +   G GEP  N+  VK  +     + G S       K R TL+T+G + N
Sbjct: 140 NSGSRKNLEVDFFG-GEPTMNWQVVKDLV-----AYGRSIEEKYNKKFRFTLTTNGVLVN 193

Query: 228 IARV----GEEIGVMLAISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRI 282
              +     E   V++++   A ++   N + P  N K   E++I   + +    N  + 
Sbjct: 194 EEIMDFCDKEMGNVVMSVDGRAETH---NHMRPFRNGKGSYELVIPKFQKWAERRNQDKY 250

Query: 283 TFEYVMLKGINDSPRDALNLIKI 305
                      D  +D L L  +
Sbjct: 251 YVRGTFTHYNLDFAKDVLALADL 273


>gi|262191309|ref|ZP_06049502.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae CT
           5369-93]
 gi|262032805|gb|EEY51350.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae CT
           5369-93]
          Length = 246

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 85/250 (34%), Gaps = 58/250 (23%)

Query: 123 GCSLTCSFCY------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           GC   C +C+      T T    R +T EEI+ +    R  +    G             
Sbjct: 29  GCLFRCKYCHNRDTWDTHTG---REVTVEEIIKEAKSYRHFMNASGGG------------ 73

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVG 232
                 V    GE +   + V+     A              L T+G+V    P I  V 
Sbjct: 74  ------VTCSGGEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYVRKFTPVIDEVL 121

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E    ++ + +  + +++   L+ ++ K      +D  R+   +   ++    YV++ G 
Sbjct: 122 EVTD-LVMLDIKQMDDEIHQDLIGVSNK----RTLDFARYLHQI--GQKTWLRYVVVPGY 174

Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFS 338
            D    A  L + +K +    KI L+P++     ++                ++ +    
Sbjct: 175 TDDEASAHQLGEFIKDMENIEKIELLPYHKLGAHKWEAMGEEYPLEGVNPPSKETMDKIV 234

Query: 339 ECIKRSGYSS 348
             +++   + 
Sbjct: 235 AILEQYHSNV 244


>gi|290969100|ref|ZP_06560630.1| radical SAM domain protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290780860|gb|EFD93458.1| radical SAM domain protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 470

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 71/210 (33%), Gaps = 18/210 (8%)

Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159
               E V        +LC++    C+L C +C+                      R L+ 
Sbjct: 84  CQSFEVVAKERPIVKSLCLNIAHDCNLRCQYCFASQGDYD------------THKRELMS 131

Query: 160 DFPGCEDIEGMVIPSVGRKIS-NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
                  ++ ++  + G++    I   G GEPL NF  VK++++   +         +++
Sbjct: 132 FDVAKHAVDLLIRSTEGKRQHCEIDFFG-GEPLMNFGVVKQTIAYIREQEKKHNKVFKLS 190

Query: 219 LSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPIN-RKYPLEMLIDACRHYPG 275
           L+T+G +  P   R   +  + L +SL     ++ + + P        +   +   +   
Sbjct: 191 LTTNGMLLDPEKVRFLTDNHISLILSLDG-RPEVHDRMRPCAGGGGSYKKCAENLAYAVS 249

Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKI 305
                         K   D   D  ++  +
Sbjct: 250 HRRGEEYYVRGTFTKYNLDFTEDVAHMADL 279


>gi|257465668|ref|ZP_05630039.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus minor
           202]
 gi|257451328|gb|EEV25371.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus minor
           202]
          Length = 246

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 85/245 (34%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         ++ E+++ +V+  +  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDLDGGKE--ISVEDLMKEVVTYKHFMKATGGGVTASGGEAVLQME 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +    D+ G              + P +  + E   +
Sbjct: 87  FVRDWFRACKAEG----------IDTCLDTNGF----------VRHYSPLVDEMLEVTDL 126

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +L + L  +++++   L+ ++ K      +D  R+   L+   R    YV++ G  D   
Sbjct: 127 VL-LDLKQLNDEIHQDLIGVSNK----RTLDFARYLQKLNK--RTWIRYVVVPGYTDDDD 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343
            A  L + ++G+    K+ L+P++     ++                ++ +    + I+ 
Sbjct: 180 SAHRLGQFIQGMENIEKVELLPYHRLGAHKWETLGYKYELEGVLPPPKEKLEHLKDIIES 239

Query: 344 SGYSS 348
            G++ 
Sbjct: 240 YGHTV 244


>gi|319943185|ref|ZP_08017468.1| pyruvate formate-lyase activating enzyme [Lautropia mirabilis ATCC
           51599]
 gi|319743727|gb|EFV96131.1| pyruvate formate-lyase activating enzyme [Lautropia mirabilis ATCC
           51599]
          Length = 273

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 84/251 (33%), Gaps = 54/251 (21%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +       R +T  E++ QV+  R  L    G     G        
Sbjct: 54  GCLMRCLYCHNRDTWDLQSDKAREMTVPEVMKQVMSYRHYLKATGGGVTATGG------- 106

Query: 178 KISNIVMMGMGEPLCNFDNVKK-SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
                      EPL  ++ V+   ++      G+        L T+G+  +   V E + 
Sbjct: 107 -----------EPLLQYEFVRDWFVAC--HQNGI-----HTCLDTNGYALHYDEVLETLL 148

Query: 237 VM---LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
                + + L  +  D+  +LV      P    +   +H        R+   YV++ G  
Sbjct: 149 DHTDLVMLDLKQIDPDIHRVLV----GIPNTRTLAFAQHLARRKQKTRV--RYVVVPGYT 202

Query: 294 DSPRDALNLIKILKGIPAK--INLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339
           D  R A  L + +  +     + ++P++          G +Y         ++ +     
Sbjct: 203 DDDRSAHLLGRFIAPMDNVDTVEILPYHELGAHKWALCGDDYKLKGVHPPPKETVQRVRS 262

Query: 340 CIKRSGYSSPI 350
            ++  G +  +
Sbjct: 263 ILEGYGKAVIV 273


>gi|258621387|ref|ZP_05716421.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM573]
 gi|258626814|ref|ZP_05721621.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM603]
 gi|262171168|ref|ZP_06038846.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus MB-451]
 gi|258580861|gb|EEW05803.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM603]
 gi|258586775|gb|EEW11490.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM573]
 gi|261892244|gb|EEY38230.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus MB-451]
          Length = 246

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 86/250 (34%), Gaps = 58/250 (23%)

Query: 123 GCSLTCSFCY------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           GC   C +C+      T T    R +T EEI+ +    R  +    G             
Sbjct: 29  GCLFRCKYCHNRDTWDTHTG---REVTVEEIIKEAKSYRHFMNASGGG------------ 73

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVG 232
                 V    GE +   + V+     A              L T+G++    P I  V 
Sbjct: 74  ------VTCSGGEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYIRKFTPVIDEVL 121

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E    ++ + +  +++++   L+ ++ K      +D  R+   +   ++    YV++ G 
Sbjct: 122 EVTD-LVMLDIKQMNDEIHQDLIGVSNK----RTLDFARYLHQI--GQKTWLRYVVVPGY 174

Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFS 338
            D    A  L + +K +    KI L+P++     ++                ++ +    
Sbjct: 175 TDDEASAHQLGEFIKDMENIEKIELLPYHKLGAHKWEAMGEEYPLEGVNPPSKETMDKIV 234

Query: 339 ECIKRSGYSS 348
             +++   + 
Sbjct: 235 AILEQYHSNV 244


>gi|258513433|ref|YP_003189655.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777138|gb|ACV61032.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 452

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 82/218 (37%), Gaps = 27/218 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C++ C +C+ G  K   +               L+    G + +E ++  S
Sbjct: 92  ALCLHLAHDCNMRCRYCFAGQGKFGGS-------------SDLMPLNVGKKAMEFLIKSS 138

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI---TLSTSGFV--PNIA 229
             R+   +   G GEPL NF  V +   +     GL+ +  +I   T++T+G +    + 
Sbjct: 139 GSRRNIEVDFFG-GEPLMNFK-VLQ--DLVYYGEGLASANGKIIKFTVTTNGLLLNKEVE 194

Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
                  +   +SL     DL N + P+ N +   + ++   + +    +          
Sbjct: 195 DFLNCHDISTVLSLDG-RPDLHNYMRPMPNGEGSYKYVLPNFQRFVNSRHQEDYYIRGTY 253

Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
                D  +D  +L  +  G  + +++ P     G +Y
Sbjct: 254 THHNLDFSKDIFHLAGL--GFNS-LSIEPVVAESGKDY 288


>gi|271500817|ref|YP_003333842.1| pyruvate formate-lyase activating enzyme [Dickeya dadantii Ech586]
 gi|270344372|gb|ACZ77137.1| pyruvate formate-lyase activating enzyme [Dickeya dadantii Ech586]
          Length = 246

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V+  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKEVVTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A    G++       L T+GFV    P I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHEQGIN-----TCLDTNGFVRRYDPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    L+        Y    N  R    YV++ G +
Sbjct: 123 ATD-LVMLDLKQLNDEIHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  +G+    KI L+P++     ++                   +     
Sbjct: 176 DDDASAHLLGEFTQGMSNIEKIELLPYHELGKHKWTAMGEEYKLDGVKPPKADTMDRVKS 235

Query: 340 CIKRSGYSS 348
            +   G+  
Sbjct: 236 ILTSYGHKV 244


>gi|254362790|ref|ZP_04978871.1| hypothetical protein
 gi|153094419|gb|EDN75267.1| [formate-C-acetyltransferase]-activating enzyme [Mannheimia
           haemolytica PHL213]
          Length = 246

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 85/245 (34%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V   +  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDLDGGKE--ITVEELMKEVTTYKHFMKATGGGVTASGGEAVLQME 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           ++   D+ G              + P +  + E   +
Sbjct: 87  FVRDWFRACKAEG----------INTCLDTNGF----------VRHYSPVVDEMLEVTDL 126

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +L + L  +++++   LV ++ K      +D  R+   L+        YV++ G  D   
Sbjct: 127 VL-LDLKQLNDEVHQDLVGVSNK----RTLDFARYLHKLNK--PTWVRYVVVPGYTDDDD 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFSECIKR 343
            A  L + ++G+    K+ L+P++     ++                ++D+    + I+ 
Sbjct: 180 SAHRLGQFIQGMDNIEKVELLPYHRLGAHKWETLGYKYELEGVMSPPKEDLERIQKIIES 239

Query: 344 SGYSS 348
            G++ 
Sbjct: 240 YGHTV 244


>gi|147679198|ref|YP_001213413.1| Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI]
 gi|146275295|dbj|BAF61044.1| predicted Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI]
          Length = 466

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 85/239 (35%), Gaps = 31/239 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           +LC+     C+L C +C+ G  +                A  L+    G   ++ ++  S
Sbjct: 92  SLCLHLAHSCNLRCRYCFAGQGRFGG-------------ADELMPVEVGRAALDFLIARS 138

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL----SIASDSMGLSFSKRRITLSTSGFVPNIAR 230
             RK   +   G GEPL NF  V K L           G  F   + TL+T+  + +   
Sbjct: 139 GRRKHLEVDFFG-GEPLLNF-AVLKELVDYGRRLGREKGKEF---KFTLTTNALLLDGEI 193

Query: 231 VG----EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
            G    E I V+L++      +D   +          ++ +   + +      +      
Sbjct: 194 AGFLNRENISVVLSLDGRREVHD--AMRPAPGGNGSYDLALARIKSFVDSRAGKNYYIRG 251

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
              +   D   D L+L  +  G    I++ P       +Y   D+   + F++  + +G
Sbjct: 252 TYTRRNLDFCEDVLHLAGL--GFE-HISVEPVVAPAEADYSLRDEDLPLLFAQYERLAG 307


>gi|197284599|ref|YP_002150471.1| pyruvate formate lyase-activating enzyme 1 [Proteus mirabilis
           HI4320]
 gi|227356781|ref|ZP_03841166.1| pyruvate formate-lyase activating enzyme [Proteus mirabilis ATCC
           29906]
 gi|194682086|emb|CAR41647.1| pyruvate formate-lyase activating enzyme [Proteus mirabilis HI4320]
 gi|227163071|gb|EEI48006.1| pyruvate formate-lyase activating enzyme [Proteus mirabilis ATCC
           29906]
          Length = 246

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 81/244 (33%), Gaps = 46/244 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+       R+ T +    Q++    L+ +                      
Sbjct: 29  GCLMRCLYCH------NRD-TWDTHGGQIVTVDELMKEAVTYRHFMNASGGG-------- 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGEEIGVM 238
           V    GE +   + V+                    L T+GFV    P I  + +    +
Sbjct: 74  VTASGGEAILQAEFVRDWFRACKKEN------IHTCLDTNGFVRRYDPVIDELMDVTD-L 126

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           + + L  V++D+   LV ++ +  LE        Y      ++    YV++ G +D    
Sbjct: 127 VMLDLKQVNDDIHQKLVGVSNQRTLE-----FARYLAKR-GQKTWIRYVVVPGWSDDDDS 180

Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRS 344
           A  L + +K +    K+ L+P++     ++                ++ +      I   
Sbjct: 181 AHRLGEFIKDMKNIEKVELLPYHELGKHKWVALGEEYKLDGIHPPSKETMENVKAIIASY 240

Query: 345 GYSS 348
           G+  
Sbjct: 241 GHKV 244


>gi|15641871|ref|NP_231503.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121587313|ref|ZP_01677085.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
           2740-80]
 gi|121727114|ref|ZP_01680288.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V52]
 gi|147674120|ref|YP_001217403.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae O395]
 gi|153213085|ref|ZP_01948623.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 1587]
 gi|153818851|ref|ZP_01971518.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae NCTC
           8457]
 gi|153823101|ref|ZP_01975768.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae B33]
 gi|153825235|ref|ZP_01977902.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-2]
 gi|153830545|ref|ZP_01983212.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 623-39]
 gi|183179507|ref|ZP_02957718.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-3]
 gi|227081998|ref|YP_002810549.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae M66-2]
 gi|229508034|ref|ZP_04397539.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae BX
           330286]
 gi|229511727|ref|ZP_04401206.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae B33]
 gi|229515249|ref|ZP_04404709.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TMA 21]
 gi|229518865|ref|ZP_04408308.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC9]
 gi|229520329|ref|ZP_04409755.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TM
           11079-80]
 gi|229523888|ref|ZP_04413293.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae bv.
           albensis VL426]
 gi|229529108|ref|ZP_04418498.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae 12129(1)]
 gi|229607581|ref|YP_002878229.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae
           MJ-1236]
 gi|254226038|ref|ZP_04919637.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V51]
 gi|254286774|ref|ZP_04961728.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
           AM-19226]
 gi|254848956|ref|ZP_05238306.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MO10]
 gi|255745371|ref|ZP_05419320.1| pyruvate formate-lyase activating enzyme [Vibrio cholera CIRS 101]
 gi|262153526|ref|ZP_06028655.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae INDRE
           91/1]
 gi|262167426|ref|ZP_06035133.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC27]
 gi|298498092|ref|ZP_07007899.1| pyruvate formate-lyase 1-activating enzyme [Vibrio cholerae MAK
           757]
 gi|9656400|gb|AAF95017.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121548473|gb|EAX58531.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
           2740-80]
 gi|121630492|gb|EAX62884.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V52]
 gi|124116132|gb|EAY34952.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 1587]
 gi|125621421|gb|EAZ49756.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V51]
 gi|126510579|gb|EAZ73173.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae NCTC
           8457]
 gi|126519392|gb|EAZ76615.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae B33]
 gi|146316003|gb|ABQ20542.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O395]
 gi|148873975|gb|EDL72110.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 623-39]
 gi|149741214|gb|EDM55265.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-2]
 gi|150423201|gb|EDN15148.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae
           AM-19226]
 gi|183012918|gb|EDT88218.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-3]
 gi|227009886|gb|ACP06098.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae M66-2]
 gi|227013767|gb|ACP09977.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O395]
 gi|229332882|gb|EEN98368.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae 12129(1)]
 gi|229337469|gb|EEO02486.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae bv.
           albensis VL426]
 gi|229342695|gb|EEO07687.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TM
           11079-80]
 gi|229343554|gb|EEO08529.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC9]
 gi|229347954|gb|EEO12913.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TMA 21]
 gi|229351692|gb|EEO16633.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae B33]
 gi|229355539|gb|EEO20460.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae BX
           330286]
 gi|229370236|gb|ACQ60659.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae MJ-1236]
 gi|254844661|gb|EET23075.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MO10]
 gi|255737201|gb|EET92597.1| pyruvate formate-lyase activating enzyme [Vibrio cholera CIRS 101]
 gi|262024123|gb|EEY42817.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC27]
 gi|262030653|gb|EEY49288.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae INDRE
           91/1]
 gi|297542425|gb|EFH78475.1| pyruvate formate-lyase 1-activating enzyme [Vibrio cholerae MAK
           757]
 gi|327484419|gb|AEA78826.1| Pyruvate formate-lyase activating enzyme [Vibrio cholerae
           LMA3894-4]
          Length = 246

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 85/250 (34%), Gaps = 58/250 (23%)

Query: 123 GCSLTCSFCY------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           GC   C +C+      T T    R +T EEI+ +    R  +    G     G       
Sbjct: 29  GCLFRCKYCHNRDTWDTHTG---REVTVEEIIKEAKSYRHFMNASGGGITCSG------- 78

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVG 232
                      GE +   + V+     A              L T+G+V    P I  V 
Sbjct: 79  -----------GEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYVRKFTPVIDEVL 121

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E    ++ + +  + +++   L+ ++ K      +D  R+   +   ++    YV++ G 
Sbjct: 122 EVTD-LVMLDIKQMDDEIHQDLIGVSNK----RTLDFARYLHQI--GQKTWLRYVVVPGY 174

Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFS 338
            D    A  L + +K +    KI L+P++     ++                ++ +    
Sbjct: 175 TDDEASAHQLGEFIKDMENIEKIELLPYHKLGAHKWEAMGEEYPLEGVNPPSKETMDKIV 234

Query: 339 ECIKRSGYSS 348
             +++   + 
Sbjct: 235 AILEQYHSNV 244


>gi|229582204|ref|YP_002840603.1| tRNA-modifying enzyme [Sulfolobus islandicus Y.N.15.51]
 gi|228012920|gb|ACP48681.1| Wyosine base formation domain protein [Sulfolobus islandicus
           Y.N.15.51]
          Length = 361

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 100/308 (32%), Gaps = 33/308 (10%)

Query: 53  MSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112
           +  +S+  + L  + + II    V +K     T   L+   +   G    IE+       
Sbjct: 10  IDTVSEIFKELQKEKYHIIGTHSVYKKCHW--THSALVANRSCYKGKFYGIES------H 61

Query: 113 RGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLT-------AEEILLQVLLARSLLGDFP 162
           R      +   C   C  C+        L  + T        E I+ + +          
Sbjct: 62  RCVQMTPTAAWCWFRCVHCWRLEPEDVGLEWDDTKMPAYDDPEYIVERSIEEHKKAVSGY 121

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
              +   +       + +++ +   GEP   ++ +   +                 + TS
Sbjct: 122 LGRNDVNIQKVKDAMRPAHVAISLTGEPTL-YEKLGDLIK-----EYHKRGMTTFLV-TS 174

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
           G  P+I    EE    L +SL A +     ++         ++++      P  S     
Sbjct: 175 GVRPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILPSFS--SPT 232

Query: 283 TFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEYL-----CSDQKDIVT 336
              + M+KG N S +DA    K+++  +P  I +  +       Y          K+I  
Sbjct: 233 VIRFTMIKGYNMSEQDAREFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAMPKHKEIRE 292

Query: 337 FSECIKRS 344
           F++ + + 
Sbjct: 293 FAKTLAQY 300


>gi|165976460|ref|YP_001652053.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876561|gb|ABY69609.1| pyruvate formate-lyase activating enzyme [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 245

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 82/245 (33%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         ++ E+++ +V+  +  +    G     G        
Sbjct: 28  GCLMRCKYCHNRDTWDLDGGKE--ISVEDLMKEVVTYKHFMKATGGGVTASGGEAVLQME 85

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +    D+ G              + P +  + E    
Sbjct: 86  FVRDWFRACKAEG----------IDTCLDTNGF----------VRHYSPVVDEMLEVTD- 124

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++++   L+ ++ K      +D  R+   L+   R    YV++ G  D   
Sbjct: 125 LVMLDLKQLNDEIHQDLIGVSNK----RTLDFARYLQKLNK--RTWIRYVVVPGYTDDDD 178

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343
            A  L + ++G+    K+ L+P++     ++                ++ +      I+ 
Sbjct: 179 SAHRLGQFIQGMQNIEKVELLPYHRLGAHKWETLGYKYELEGVLPPPKETMDRLKAIIES 238

Query: 344 SGYSS 348
            G+  
Sbjct: 239 YGHIV 243


>gi|153001208|ref|YP_001366889.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
           OS185]
 gi|160875881|ref|YP_001555197.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
           OS195]
 gi|217972870|ref|YP_002357621.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica
           OS223]
 gi|151365826|gb|ABS08826.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS185]
 gi|160861403|gb|ABX49937.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS195]
 gi|217498005|gb|ACK46198.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS223]
 gi|315268072|gb|ADT94925.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS678]
          Length = 246

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 75/245 (30%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +  +E++ Q++  R  L    G     G        
Sbjct: 29  GCLMRCQYCHNRDTWDLDGGKE--VLVDELMSQIISYRPFLDASNGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            ++ +      E           +    D+ G              + P I  + +   +
Sbjct: 87  FVAELFTACQQEG----------IHTCLDTNGF----------VRKYTPVIDELLDHTNL 126

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +L + +  + ++    L  ++    L+        Y    N       YV++ G  D   
Sbjct: 127 VL-LDIKHMDDEKHIELTKVSNHRTLQ-----FAQYLAERNQ-ATWIRYVVVGGFTDDEA 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343
            AL L + +K +    K+ L+P++     ++                ++ +         
Sbjct: 180 SALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGESYQLDGISPPSRETMEKIKAVFVG 239

Query: 344 SGYSS 348
            G ++
Sbjct: 240 QGINA 244


>gi|302874687|ref|YP_003843320.1| pyruvate formate-lyase activating enzyme [Clostridium cellulovorans
           743B]
 gi|302577544|gb|ADL51556.1| pyruvate formate-lyase activating enzyme [Clostridium cellulovorans
           743B]
          Length = 240

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 91/265 (34%), Gaps = 46/265 (17%)

Query: 96  CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
            +G     E++ + +       V  Q GC+L C +C+                       
Sbjct: 2   TVGRVHSFESMGLLDGPGIRNIVFLQ-GCNLRCLYCHNPD---------------TWACN 45

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
                 P     + +       K    V    GEPL  ++ + ++L       G+     
Sbjct: 46  GGTEYTPEQLLKKIVRFKPYFEKSGGGVTFSGGEPLLQYNFLIEALK-LCKENGI----- 99

Query: 216 RITLSTSGFVPNIAR--VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
              + T+G         +     V+L I  +   ++++   +        +  ++A ++ 
Sbjct: 100 HTAIDTAGVGMGNYEEVLKYTDLVLLDIKHY---DEIKYKEITGRDNSEFKKFLEALKN- 155

Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN-------PWPGC 324
               +  ++   +V++ GIND+  D L L + +K IP   K++L+P++          G 
Sbjct: 156 ----SNSKVWIRHVVVPGINDTKEDVLALCEYIKDIPRIEKVDLLPYHVLGVNKYDVMGI 211

Query: 325 EY-----LCSDQKDIVTFSECIKRS 344
           EY         ++        +K +
Sbjct: 212 EYRLKDLQPMSKEKAEELKAFLKEN 236


>gi|317051293|ref|YP_004112409.1| Radical SAM domain-containing protein [Desulfurispirillum indicum
           S5]
 gi|316946377|gb|ADU65853.1| Radical SAM domain protein [Desulfurispirillum indicum S5]
          Length = 313

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 12/133 (9%)

Query: 182 IVMMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM- 238
           I   G GEPL    F  +  ++          F + R+ L T+G       + +E   + 
Sbjct: 75  ITFAGSGEPLLFRRFGELVAAIKA-------EFPQYRLCLLTNGTPLTDRALWQECQQLD 127

Query: 239 -LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            +  SL A + ++   +   +    ++ +I A   +        I  E ++L GIND P 
Sbjct: 128 IVVPSLDAATQEIFTRINRPHHTIDVQEVITALSDFSRQFCGE-IWLEILILPGINDDPA 186

Query: 298 DALNLIKILKGIP 310
               L    + I 
Sbjct: 187 HLEALAAACRSID 199


>gi|239623326|ref|ZP_04666357.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522292|gb|EEQ62158.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 466

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 71/195 (36%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G + ++ ++  S
Sbjct: 107 ALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 153

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             R+   +   G GEPL N+D VK+ +            K R T++T+G + N   +   
Sbjct: 154 GNREHLEVDFFG-GEPLMNWDVVKRLVEYGRSKEEEFHKKFRFTITTNGVLLNDEIMDFC 212

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V++++      ND   +    N     E+ +   + +      +         +
Sbjct: 213 NKEMSNVVMSLDGRKDVND--RMRPFRNGSGSYELTVPKFQKFAKSRGQKDYYVRGTFTR 270

Query: 291 GINDSPRDALNLIKI 305
              D   D L+   +
Sbjct: 271 NNLDFAADVLHYADL 285


>gi|281356709|ref|ZP_06243200.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281316836|gb|EFB00859.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 321

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 74/228 (32%), Gaps = 33/228 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL C +C        R  T        L               E   + S   ++  I 
Sbjct: 29  CSLDCIYCEA------RQTTC-------LTLERKEYVPVDAVIRELDEVLSGKPELDFIT 75

Query: 184 MMGMGEPLCN--FDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARVGEEIGVM 238
             G GEP  N     V   L          + +  + L T+GF    P + R    I   
Sbjct: 76  FSGSGEPTLNSGIGRVVDFLKT-------RYPQYPVCLLTNGFALGDPEVRREIARID-R 127

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           +  SL A + +    +            +     Y   + +  I  E  ++ G+NDS   
Sbjct: 128 VVPSLDASNTEEFIRINRPAPGLEFGRFVKELTAYTQ-TASSEIYLELFIVPGVNDSDES 186

Query: 299 ALNLIKILKGIPAKINLIPFN--PWPG-CEYLCSD-QKDIVTFSECIK 342
               ++I++G+     ++  N    PG  +++     ++   F   ++
Sbjct: 187 IRRFVEIVRGMKLV--MVQLNTLDRPGVVDWVRPSTPENTRRFIRALE 232


>gi|291531854|emb|CBK97439.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium siraeum
           70/3]
          Length = 457

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 92/263 (34%), Gaps = 31/263 (11%)

Query: 87  KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
           K L            +   + +    +  +C+     C+L C +C+  T     +     
Sbjct: 76  KMLF-----TEDDYEQYAAMAMKAPIK-AMCLHVSHDCNLRCKYCFAQTGDFGGD----- 124

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
                   R L+    G   ++ ++  S  R+   +   G GEPL  +D V +++  A  
Sbjct: 125 --------RMLMKPETGKRAMDFLIKHSANRENLEVDFFG-GEPLMAWDTVVETVKYARS 175

Query: 207 SMGLSFSKRRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYP 262
                    R T++T+G + +  ++     E    +L++      ND  NI    N K  
Sbjct: 176 IEKQHGKNFRFTITTNGMLLDDEKIDYINKEMSNCVLSLDGRKEVND--NIRPTPNGKGS 233

Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322
            ++++   +        +         K   D   D L++  +  G   ++++ P    P
Sbjct: 234 YDIIVPKYQKLVAGRGTKDYYVRGTFTKYNLDFANDVLHISDL--GFE-QLSVEPVVTDP 290

Query: 323 GCEY--LCSDQKDIVTFSECIKR 343
              Y    SD   I    + +++
Sbjct: 291 KMPYAITESDLPTIFAEYDRLEK 313


>gi|258513074|ref|YP_003189331.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634977|dbj|BAI00952.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256638032|dbj|BAI04000.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256641086|dbj|BAI07047.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256644141|dbj|BAI10095.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256647196|dbj|BAI13143.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650249|dbj|BAI16189.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653240|dbj|BAI19173.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656293|dbj|BAI22219.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 369

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 16/143 (11%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+ E     L + L A +  +R  ++P      ++  +DA      +    ++   Y+
Sbjct: 223 FQRLREAGADSLGMHLEAATQAVREKIMPGKATVSVDRYMDAFASAVPIFGRGQVN-TYI 281

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSEC 340
           +  G+ DSP D L L + L  +     ++PF P  G           + + +        
Sbjct: 282 L-AGLGDSPEDILALAERLIALGVYPFVVPFVPISGTPLENHVPPSAEFMKSVLAPLGRM 340

Query: 341 IKRSGYSSPIRTPRGLDILAACG 363
           ++ +   S        DI A CG
Sbjct: 341 LREANMKST-------DIRAGCG 356


>gi|167766973|ref|ZP_02439026.1| hypothetical protein CLOSS21_01490 [Clostridium sp. SS2/1]
 gi|167710948|gb|EDS21527.1| hypothetical protein CLOSS21_01490 [Clostridium sp. SS2/1]
 gi|291559683|emb|CBL38483.1| pyruvate formate-lyase 1-activating enzyme [butyrate-producing
           bacterium SSC/2]
          Length = 244

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 82/242 (33%), Gaps = 47/242 (19%)

Query: 96  CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
            +G    IE++ + +       +  Q GC+L C FC+        N    E+        
Sbjct: 2   TVGHVHSIESMGLVDGPGIRTVIFLQ-GCALRCRFCH--------NPDTWELSG------ 46

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS--------LSIASDS 207
                 P     +        ++   +   G GEPL   D +K++        +    D+
Sbjct: 47  -GTEYTPEKLVAKIRRFKPYFKEDGGVTFSG-GEPLLQPDFLKETLKLCKNEGIHTCIDT 104

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
            G   S     L+ +  V     + +   +      H    +   +      ++  E  +
Sbjct: 105 AGYGLSDYDEILNHTDLV-----LLDLKHI------HKTDYEK--MTGRSMDRF--EEFL 149

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCE 325
           +A        +  +I   +V++ GI DS      L   ++ IP   K+ L+P++     +
Sbjct: 150 NAL-----KKHQTKIWIRHVVVPGITDSEDHMAQLKAYIQTIPNVEKVELLPYHLLGTNK 204

Query: 326 YL 327
           Y 
Sbjct: 205 YK 206


>gi|78044483|ref|YP_361420.1| radical SAM domain-containing protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996598|gb|ABB15497.1| radical SAM domain protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 458

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 80/214 (37%), Gaps = 23/214 (10%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P+     +C++    C++ C +C+ GT                   R L+      + I+
Sbjct: 94  PKTEIKAMCLNIAHDCNMRCRYCFAGTGSYG-------------HERGLMPLTIAQKAID 140

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV 225
            ++  S  RK   +   G GEPL N++ VK ++      + + G + S    T +     
Sbjct: 141 FLIENSGYRKNLEVDFFG-GEPLLNWEVVKATVLYGKAKAKAFGKNISFTLTTNALLLTD 199

Query: 226 PNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
                + E ++G++L++      +D R   +P  +    + ++   +++      R    
Sbjct: 200 EVREFLAEHDMGIVLSLDGREEVHD-RMRPLPGGKA-SYQTVLTNIKNFLEKWGDRPYYI 257

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
                    D   D   L +  +G  + I+L P 
Sbjct: 258 RGTFTAQNPDFAEDFKALAQ--EGFKS-ISLEPV 288


>gi|331086093|ref|ZP_08335176.1| hypothetical protein HMPREF0987_01479 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407016|gb|EGG86521.1| hypothetical protein HMPREF0987_01479 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 303

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 14/83 (16%)

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC---------- 328
           RI     ++ G+ND+  +   +I  LK   +   INL+P++   G +Y            
Sbjct: 217 RIYIRIPVIGGVNDTEEEMEAMITFLKQSISVSQINLLPYHNIAGGKYDKLDIRYKGEAF 276

Query: 329 --SDQKDIVTFSECIKRSGYSSP 349
               ++ +  F     ++G+++ 
Sbjct: 277 TIPPKEQMEAFQRRFIQNGFANT 299


>gi|237743605|ref|ZP_04574086.1| Fe-S oxidoreductase [Fusobacterium sp. 7_1]
 gi|229432636|gb|EEO42848.1| Fe-S oxidoreductase [Fusobacterium sp. 7_1]
          Length = 287

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 83/237 (35%), Gaps = 38/237 (16%)

Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           C+L C FC    T   +L R       EIL ++      +                    
Sbjct: 28  CNLNCIFCECGATKKIQLKRQRFKDMNEILNEIQSVLKDIKPDY---------------- 71

Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
              +   G GEP  + D  N+ K++       G      +I L T+  +    +V +E+ 
Sbjct: 72  ---VTFSGSGEPTLSLDLGNISKAIKKDLKFKG------KICLITNSLLLADKQVIKELE 122

Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              ++  +L+ +  D+   +V  + +  ++ +     +    +   +I  E  +L+ IND
Sbjct: 123 YIDLIIPTLNTLRQDIFEKIVRPDYRTSVDEIRKGFINLNNSNYKGKIWIEIFILENIND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347
           +  + + +   L     + + I  N         +        I+   + ++ +G  
Sbjct: 183 NEENFIEIANFLNSENIRYDRIQLNTIDRVGAERDLKAISFDKILKAKKILEENGLH 239


>gi|312134544|ref|YP_004001882.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311774595|gb|ADQ04082.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL]
          Length = 453

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 20/192 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C+     C L C +C+  +                   R L+    G + I+ ++  S
Sbjct: 92  AMCLHVAHDCDLRCRYCFASSGTFK-------------QERKLMSFDVGKKAIDFLLQNS 138

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS---MGLSFSKRRITLSTSGFVPNIARV 231
             R+   +   G GEPL NF+ VKK +  A           S    T +T+     I  +
Sbjct: 139 GSRQNLEVDFFG-GEPLLNFEVVKKIVEYARQEEKKYNKKISFTLTTNATNLTDQIIEYL 197

Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            + +  V+L+       ND   I    N  Y  + + D    +    N +          
Sbjct: 198 NQNMENVVLSHDGRPEVNDFMRIDKDGNGTY--DRITDNILRFIKKRNGKTYYVRGTFTA 255

Query: 291 GINDSPRDALNL 302
              D  +D L+L
Sbjct: 256 KNLDFSKDVLHL 267


>gi|258645977|ref|ZP_05733446.1| radical SAM domain protein [Dialister invisus DSM 15470]
 gi|260403348|gb|EEW96895.1| radical SAM domain protein [Dialister invisus DSM 15470]
          Length = 478

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 95/259 (36%), Gaps = 21/259 (8%)

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           L+R  +         E     +     LC++    C+L C +C+ G              
Sbjct: 73  LIRAQSLYAPMDKNYEMAIEDKPIVKALCINIAHDCNLRCKYCFAGQGGY---------- 122

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            Q    R L+        ++ ++  S  R+   +   G GEPL N+  V+++++      
Sbjct: 123 GQ---WRMLMSFDVARRAVDFLIAHSGHREHCELDFFG-GEPLMNWHVVQQTVTYVRQQE 178

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH-AVSNDLRNILVP-INRKYPLEML 266
                K +++L+T+G + +  +V       +++ L      ++ + + P +N +   + +
Sbjct: 179 KKHNKKIKMSLTTNGMLLDKEKVKYLTDNHISLILSLDGRKEMHDSMRPGVNNEGTYDRI 238

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
           +   ++     N           +   D   D  +++    G PA +++ P       +Y
Sbjct: 239 MKNLQYCIKHRNGEEYYVRGTFTRQNLDFTTDVEDMLN--HGFPA-VSMEPVVGDDTADY 295

Query: 327 --LCSDQKDIVTFSECIKR 343
               SD   +    + + +
Sbjct: 296 SIKESDLPRVKDEYDKLAK 314


>gi|283784729|ref|YP_003364594.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter rodentium
           ICC168]
 gi|282948183|emb|CBG87750.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter rodentium
           ICC168]
          Length = 246

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 87  FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N   +   YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDEIHQHLVGVSNHRTLE-----FAQYLAKKN-VNVWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 236 ILEQYGHKV 244


>gi|148381132|ref|YP_001255673.1| glycyl-radical activating family protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|148290616|emb|CAL84745.1| putative pyruvate formate-lyase 2 activating enzyme [Clostridium
           botulinum A str. ATCC 3502]
          Length = 252

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 91/273 (33%), Gaps = 53/273 (19%)

Query: 108 IPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQVL 152
           +  + R T C      C                  C+FC   T     N  A E + + L
Sbjct: 1   MFFEERCTACGICVKRCPQKIITMKNNIPVVDEGKCNFCGKCTN-FCPN-NAREYVGKDL 58

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             + ++ +    E                +   G GEP+ + D     ++   +      
Sbjct: 59  TPQEIIKEIIKDEVFYEQSSGG-------VTFSG-GEPMLHAD----FINGILEE--CKV 104

Query: 213 SKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
                T+ TSG+V      +V +++ + L   L +++N++      +     +   ++  
Sbjct: 105 RGIHTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLELL 162

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYLC- 328
             Y        I     ++  +ND+ ++    IK +  +   ++NL+P++     +Y   
Sbjct: 163 SKY-----GHNIYLRIPIINDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYKRL 217

Query: 329 -----------SDQKDIVTFSECIKRSGYSSPI 350
                         + +   +E  K++G    I
Sbjct: 218 KMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 250


>gi|240142718|ref|YP_002967231.1| putative oxidoreductase [Methylobacterium extorquens AM1]
 gi|240012665|gb|ACS43890.1| Putative oxidoreductase [Methylobacterium extorquens AM1]
          Length = 377

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 20/150 (13%)

Query: 225 VPNIARVGEEIGV----MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
            P+  R  E +       L + L AV+ ++R  ++P     PLE   +A      +    
Sbjct: 219 PPDDDRWFERMKASGIDALGMHLEAVTPEVRARIMPGKASVPLERYYEAFAAAVPVFGRG 278

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT- 336
           +++  Y++  G+ D+P   L + + L G+     ++PF P  G             +   
Sbjct: 279 QVS-TYIL-AGLGDTPEAILEMAERLVGLGVYPFVVPFVPISGTPLESHPAPGPDFMHAV 336

Query: 337 ---FSECIKRSGYSSPIRTPRGLDILAACG 363
               ++ + ++   S        DI A CG
Sbjct: 337 LKPLADMLAQANLRST-------DIKAGCG 359


>gi|84393746|ref|ZP_00992494.1| pyruvate formate-lyase 1 activating enzyme [Vibrio splendidus
           12B01]
 gi|84375608|gb|EAP92507.1| pyruvate formate-lyase 1 activating enzyme [Vibrio splendidus
           12B01]
          Length = 246

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 84/246 (34%), Gaps = 50/246 (20%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              +T EEI+ +    R  +    G     G        
Sbjct: 29  GCLMRCMYCHNRDTWDLHDGKE--VTVEEIINEAKSYRHFMKASGGGITCSG-------- 78

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
                     GE +   + V+     A+ + G+        L T+G++     V +E  V
Sbjct: 79  ----------GEAMLQPEFVRDFFQ-AAQAEGI-----HTCLDTNGYIRKHTEVVDE--V 120

Query: 238 MLAISLHAVS-NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + A  L  +    +R+ +            +D  R+   +   ++    YV++ G  D+P
Sbjct: 121 LEASDLVMLDLKHMRDEIHHDFIGVSNRRTLDFARYLHKI--GKKTWIRYVIVPGYTDTP 178

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
            DA  L + +K +    KI L+P++     ++                ++ +      + 
Sbjct: 179 EDAHLLGEFIKDMDNIEKIELLPYHKLGAHKWEALGYDYPLEGTNPPSKEKMDEIVAVLS 238

Query: 343 RSGYSS 348
           +   + 
Sbjct: 239 QYHSNV 244


>gi|148265485|ref|YP_001232191.1| radical SAM domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146398985|gb|ABQ27618.1| Radical SAM domain protein [Geobacter uraniireducens Rf4]
          Length = 313

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 25/227 (11%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           C+ +C +C  G            I  QV   A     +     + +  V    G +I  +
Sbjct: 26  CTYSCVYCQVGRT----------IKTQVDRRAFYWPEEIAAEVENKVRVARENGEQIDYL 75

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
             +  GEP  +  N+ + + +    +G+     RI + T+  +   + V E +     +S
Sbjct: 76  TFVADGEPTLDI-NLAREIELLR-PLGI-----RIAVITNASLIWRSDVAEALRKANWVS 128

Query: 243 LHAVSNDLR-NILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299
           L    + +R ++   +NR  PL   +D      G +      +  E +++KG+ND+    
Sbjct: 129 LK--VDTVREDVWRKLNRPSPLLEFMDLLTGMIGFAKRYGGELATETMLVKGLNDAEEHL 186

Query: 300 LNLIKILKGI-PAKINL-IPFNPWPGCEYLCSDQKDIVTFSECIKRS 344
             L   L  + PAK  L IP  P          ++ +    + ++R 
Sbjct: 187 ELLADFLMALKPAKAYLAIPTRPPAELWVKPPSEETVNRAFQILRRK 233


>gi|227827543|ref|YP_002829323.1| tRNA-modifying enzyme [Sulfolobus islandicus M.14.25]
 gi|227830230|ref|YP_002832010.1| tRNA-modifying enzyme [Sulfolobus islandicus L.S.2.15]
 gi|229579045|ref|YP_002837443.1| tRNA-modifying enzyme [Sulfolobus islandicus Y.G.57.14]
 gi|229584746|ref|YP_002843248.1| tRNA-modifying enzyme [Sulfolobus islandicus M.16.27]
 gi|238619700|ref|YP_002914526.1| tRNA-modifying enzyme [Sulfolobus islandicus M.16.4]
 gi|284997653|ref|YP_003419420.1| Wyosine base formation [Sulfolobus islandicus L.D.8.5]
 gi|227456678|gb|ACP35365.1| Wyosine base formation domain protein [Sulfolobus islandicus
           L.S.2.15]
 gi|227459339|gb|ACP38025.1| Wyosine base formation domain protein [Sulfolobus islandicus
           M.14.25]
 gi|228009759|gb|ACP45521.1| Wyosine base formation domain protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|228019796|gb|ACP55203.1| Wyosine base formation domain protein [Sulfolobus islandicus
           M.16.27]
 gi|238380770|gb|ACR41858.1| Wyosine base formation domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284445548|gb|ADB87050.1| Wyosine base formation [Sulfolobus islandicus L.D.8.5]
 gi|323474594|gb|ADX85200.1| Wyosine base formation domain protein [Sulfolobus islandicus
           REY15A]
 gi|323477326|gb|ADX82564.1| Wyosine base formation domain protein [Sulfolobus islandicus
           HVE10/4]
          Length = 361

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 8/130 (6%)

Query: 221 TSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
           TSG  P+I    EE    L +SL A +     ++         ++++      P  S   
Sbjct: 173 TSGVRPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILPSFS--S 230

Query: 281 RITFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEYL-----CSDQKDI 334
                + M+KG N S +DA    K+++  +P  I +  +       Y          K+I
Sbjct: 231 PTVIRFTMIKGYNMSEQDAREFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAMPKHKEI 290

Query: 335 VTFSECIKRS 344
             F++ + + 
Sbjct: 291 REFAKTLAQY 300


>gi|83591239|ref|YP_431248.1| radical SAM family protein [Moorella thermoacetica ATCC 39073]
 gi|83574153|gb|ABC20705.1| Radical SAM [Moorella thermoacetica ATCC 39073]
          Length = 473

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 83/228 (36%), Gaps = 35/228 (15%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P+ S   LC+     C++ C +C+             E        R L+    G   ++
Sbjct: 108 PQPSLQALCLHVAHDCNMRCRYCFADGGPF-----GGE--------RGLMNRDTGYAALD 154

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS---MGLSFSKRRITLSTSGFV 225
            +   +  R    +   G GEPL NF  V++ ++   +     G   S    TL+T+G  
Sbjct: 155 LLFREAGNRPRVEVDFFG-GEPLLNFGVVRELVAYGREKAAAAGKGIS---FTLTTNGLA 210

Query: 226 --PNIARVGEEIGVMLAISLHAVSNDLRNILVPINR-----KYPLEMLIDACRHYPGLSN 278
             P I       GV + +SL     D R  +   NR     +   E ++   +H+     
Sbjct: 211 LSPEIENYLITEGVSVILSL-----DGRREVHDFNRPDAAGRGTYERVVPREQHFVASQG 265

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
            R         +   D   D L+++++  G    +++ P    P  EY
Sbjct: 266 HRDYWVRGTYTRQNLDFTSDILHMVEL--GFR-YLSMEPVVAAPEAEY 310


>gi|227328163|ref|ZP_03832187.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 246

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 77/245 (31%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           ++   D+ G              + P I  + +    
Sbjct: 87  FVRDWFRACKAEG----------INTCLDTNGF----------VRRYDPVIDELLDVSD- 125

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++D+   LV ++    L+        Y    N  R    YV++ G +D   
Sbjct: 126 LVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWSDDDA 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
            A  L +  K +    KI L+P++     ++                   +      ++ 
Sbjct: 180 SAHKLGEFTKDMKNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPKADTMDRVKSILES 239

Query: 344 SGYSS 348
            G+  
Sbjct: 240 YGHKV 244


>gi|325479346|gb|EGC82442.1| six-Cys-in-45 modification radical SAM protein [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 460

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 25/217 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L+C +C+    K       + I          + +      I+ ++  S
Sbjct: 96  ALCLNVAHTCNLSCEYCFAKGGKYSG---PDAI----------MTEEVARSAIDFLLENS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231
                 +I   G GEPL NFD VK ++S A             TL+T+G +     I  +
Sbjct: 143 GSHYNLDIDFFG-GEPLLNFDLVKDTVSYARSKEEEYNKHFNFTLTTNGLLLDDDVIDYL 201

Query: 232 GEEIG-VMLAISLHAV-SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
            E +  V+L++       ++ R  L   N K   + ++   +++      +         
Sbjct: 202 NENMKNVVLSLDGRKEKHDEFRKTL---NGKGSFDTIVPKFQNFVNKRGDKEYYIRGTFT 258

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
               D   D    + +  G   + +L P    P  EY
Sbjct: 259 ANNLDFTEDLKTYLDL--GF-TRTSLEPVVGNPNEEY 292


>gi|262040998|ref|ZP_06014220.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259041692|gb|EEW42741.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 246

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 87  FVHD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   L+ ++    LE        Y    N   +   YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLIGVSNHRTLE-----FAQYLAKKN-INVWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++          G EY         ++ +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKKETMERVKG 235

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 236 ILEQYGHKV 244


>gi|225016811|ref|ZP_03706003.1| hypothetical protein CLOSTMETH_00723 [Clostridium methylpentosum
           DSM 5476]
 gi|224950479|gb|EEG31688.1| hypothetical protein CLOSTMETH_00723 [Clostridium methylpentosum
           DSM 5476]
          Length = 266

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 88/276 (31%), Gaps = 51/276 (18%)

Query: 91  RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEI 147
           +   +  G    +E+    +       V  Q GC L C FC+   T   K  R ++A+E+
Sbjct: 24  QMADQMKGRIHSVESFGAVDGPGIRFVVFLQ-GCPLRCLFCHNPDTWDGKAGREVSAQEL 82

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
           + ++L  R+ +                        V +  GEPL       + L      
Sbjct: 83  VDEILTYRNYIKKGG--------------------VTLSGGEPLLQAQFTAEVLR-LCKE 121

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIGV-MLAISLHAVSNDLRNILVPINRKYPLEML 266
            GL        + TSG +P    +       ML + +  +  D    L  +  +  +   
Sbjct: 122 NGL-----HTAVDTSGCIPLERALPALQQADMLLLDIKDIDPDDAKALTGMTNQNAIA-T 175

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGC 324
           +D C           +   +V++ G   +      L + L G     K+ L+PF+     
Sbjct: 176 LDYCEKVAK-----TVWVRHVVVPGYTLNYDKLERLAEFLSGYNCVEKVELLPFHKMGEY 230

Query: 325 EY------------LCSDQKDIVTFSECIKRSGYSS 348
           ++                QK++       +  G   
Sbjct: 231 KWEVLGEDYKLFDTEEPTQKEMAKVKGIFRSKGILV 266


>gi|261368422|ref|ZP_05981305.1| radical SAM domain protein [Subdoligranulum variabile DSM 15176]
 gi|282569543|gb|EFB75078.1| radical SAM domain protein [Subdoligranulum variabile DSM 15176]
          Length = 484

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 73/199 (36%), Gaps = 28/199 (14%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L CS+C+    K        E          L+    G + ++ +V  S
Sbjct: 101 ALCLHVAHTCNLNCSYCFAAQGKFH-----GE--------AGLMSFETGKQALDFLVAHS 147

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLST--SGFVPNIA 229
             R+   +   G GEPL NF+  K+ +        + G +F   R TL+T   G    + 
Sbjct: 148 GTRRNLEVDFFG-GEPLMNFEVCKQLVAYARSIEKAAGKNF---RFTLTTNGIGLTDEVI 203

Query: 230 RVGEEIGVMLAISL---HAVSNDLRNILVPINRKYP--LEMLIDACRHYPGLSNARRITF 284
           +   +    + +SL     V++  R  L   N  Y   +       +   G     R TF
Sbjct: 204 QWANQECYNVVLSLDGRKEVNDRFRVDL-AGNGSYDRIVPKFQKLVKARGGKGYYMRGTF 262

Query: 285 EYVMLKGINDSPRDALNLI 303
            +  +   ND    A +L 
Sbjct: 263 THHNVDFTNDLFHMADDLG 281


>gi|284175641|ref|ZP_06389610.1| tRNA-modifying enzyme [Sulfolobus solfataricus 98/2]
 gi|261602540|gb|ACX92143.1| Wyosine base formation domain protein [Sulfolobus solfataricus
           98/2]
          Length = 361

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 8/127 (6%)

Query: 221 TSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
           TSG  P+I    EE    L +SL A +     ++         ++++      P  S   
Sbjct: 173 TSGVRPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILPSFS--S 230

Query: 281 RITFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEYL-----CSDQKDI 334
                + M+KG N S +DA    K+++  +P  I +  +       Y          K+I
Sbjct: 231 PTVIRFTMIKGYNMSEQDAKEFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAMPKHKEI 290

Query: 335 VTFSECI 341
             F++ +
Sbjct: 291 REFAKIL 297


>gi|326790187|ref|YP_004308008.1| pyruvate formate-lyase activating enzyme [Clostridium lentocellum
           DSM 5427]
 gi|326540951|gb|ADZ82810.1| pyruvate formate-lyase activating enzyme [Clostridium lentocellum
           DSM 5427]
          Length = 241

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 77/236 (32%), Gaps = 35/236 (14%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
           G    IET    +       V +Q GC L C +C+                      +  
Sbjct: 3   GRIHSIETCGAVDGPGLRYIVFTQ-GCPLRCKYCHNPD---------------TWKLQDG 46

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK-SLSIASDSMGLSFSKRR 216
                     + +   S  +  +  V +  GEP    D V+   +       GL      
Sbjct: 47  NEADTEELITDILKYKSFMKASNGGVTVSGGEPFLQADFVRDLFIKC--KENGL-----H 99

Query: 217 ITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
            T+ TSG+V +I      +     + + + + +      +       PL+  +   +H  
Sbjct: 100 TTIDTSGYV-DIENADPVLDYTDLVLLDIKSYNQ----NIYKNLTGVPLDRTLALAKHLE 154

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328
                  I   YV++  + D+  D   L   L+ +    +I+++PF+     ++  
Sbjct: 155 KR--GIPIWIRYVLVPNLTDNEEDIEALATFLETLTNVERIDILPFHKMGEYKWEQ 208


>gi|15897835|ref|NP_342440.1| tRNA-modifying enzyme [Sulfolobus solfataricus P2]
 gi|13814136|gb|AAK41230.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
          Length = 365

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 8/127 (6%)

Query: 221 TSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
           TSG  P+I    EE    L +SL A +     ++         ++++      P  S   
Sbjct: 177 TSGVRPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILPSFS--S 234

Query: 281 RITFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEYL-----CSDQKDI 334
                + M+KG N S +DA    K+++  +P  I +  +       Y          K+I
Sbjct: 235 PTVIRFTMIKGYNMSEQDAKEFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAMPKHKEI 294

Query: 335 VTFSECI 341
             F++ +
Sbjct: 295 REFAKIL 301


>gi|152969487|ref|YP_001334596.1| pyruvate formate lyase-activating enzyme 1 [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206581035|ref|YP_002239448.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae
           342]
 gi|238893959|ref|YP_002918693.1| pyruvate formate lyase-activating enzyme 1 [Klebsiella pneumoniae
           NTUH-K2044]
 gi|288936299|ref|YP_003440358.1| pyruvate formate-lyase activating enzyme [Klebsiella variicola
           At-22]
 gi|290510646|ref|ZP_06550016.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. 1_1_55]
 gi|330014097|ref|ZP_08307854.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. MS 92-3]
 gi|150954336|gb|ABR76366.1| pyruvate formate lyase activating enzyme 1 [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206570093|gb|ACI11869.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae
           342]
 gi|238546275|dbj|BAH62626.1| pyruvate formate lyase activating enzyme 1 [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|288891008|gb|ADC59326.1| pyruvate formate-lyase activating enzyme [Klebsiella variicola
           At-22]
 gi|289777362|gb|EFD85360.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. 1_1_55]
 gi|328533278|gb|EGF60031.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. MS 92-3]
          Length = 246

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 87  FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N   +   YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLAKKN-INVWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++          G EY         ++ +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKKETMERVKG 235

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 236 ILEQYGHKV 244


>gi|261210513|ref|ZP_05924806.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC341]
 gi|260840298|gb|EEX66869.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC341]
          Length = 246

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 85/250 (34%), Gaps = 58/250 (23%)

Query: 123 GCSLTCSFCY------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           GC   C +C+      T T    R +T EEI+ +    R  +    G     G       
Sbjct: 29  GCLFRCKYCHNRDTWDTHTG---REVTVEEIIKEAKSYRHFMNASGGGITCSG------- 78

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVG 232
                      GE +   + V+     A              L T+G++    P I  V 
Sbjct: 79  -----------GEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYIRKFTPVIDEVL 121

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           E    ++ + +  + +++   L+ ++ K      +D  R+   +   ++    YV++ G 
Sbjct: 122 EVTD-LVMLDIKQMDDEIHQDLIGVSNK----RTLDFARYLHQI--GQKTWLRYVVVPGY 174

Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFS 338
            D    A  L + +K +    KI L+P++     ++                ++ +    
Sbjct: 175 TDDEASAHQLGEFIKDMENIEKIELLPYHKLGAHKWEAMGEEYPLEGVNPPSKETMDKIV 234

Query: 339 ECIKRSGYSS 348
             +++   + 
Sbjct: 235 AILEQYHSNV 244


>gi|311280182|ref|YP_003942413.1| pyruvate formate-lyase activating enzyme [Enterobacter cloacae
           SCF1]
 gi|308749377|gb|ADO49129.1| pyruvate formate-lyase activating enzyme [Enterobacter cloacae
           SCF1]
          Length = 246

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T +E++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVDELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 87  FVRD---------------WFRACR----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++        ++  ++        +    YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYISAK--GIKTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 236 ILEQYGHKV 244


>gi|237742865|ref|ZP_04573346.1| Fe-S oxidoreductase [Fusobacterium sp. 4_1_13]
 gi|229430513|gb|EEO40725.1| Fe-S oxidoreductase [Fusobacterium sp. 4_1_13]
          Length = 284

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 81/237 (34%), Gaps = 38/237 (16%)

Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           C+L C FC    T   +L R       EIL ++      +                    
Sbjct: 28  CNLNCIFCECGATKKIQLERQRFKNMNEILNEIQSVLKDIKPDY---------------- 71

Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
              I   G GEP  + D  N+ K++       G      +I L T+  +    +V  E+ 
Sbjct: 72  ---ITFSGSGEPTLSLDLGNISKAIKEDLKYKG------KICLITNSLLLADKQVINELE 122

Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              ++  +L+ +  D+   +V  + +  ++ +     +    +   +I  E  +L+ IND
Sbjct: 123 YIDLIIPTLNTLKQDIFEKIVRPDYRTSVDEIRKGFINLNNSNYKGKIWIEIFILENIND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347
           +  + + +   L     + + I  N         +        I+   + ++  G  
Sbjct: 183 NEENFIEIANFLNSENIRYDKIQLNTIDRVGAERDLKAISFDKILKAKKILEEYGLH 239


>gi|146311079|ref|YP_001176153.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter sp. 638]
 gi|145317955|gb|ABP60102.1| pyruvate formate-lyase activating enzyme [Enterobacter sp. 638]
          Length = 246

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 87  FVRD---------------WFRACR----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++        ++  ++  G     +    YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYIAGK--GIKTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 236 ILEQYGHKV 244


>gi|261868599|ref|YP_003256521.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413931|gb|ACX83302.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 246

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 79/245 (32%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              +T EE++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDLHGGKE--ITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +    D+ G              +   I  + +   +
Sbjct: 87  FVRDWFRACKAEG----------IHTCLDTNGF----------VRHYDHVIDELIDVTDL 126

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +L + L  +++ +   L+ +  K  LE        Y    N   +   YV++ G  DS  
Sbjct: 127 VL-LDLKELNDKVHQNLIGVPNKRTLE-----FAKYLQKRNQ-PVWIRYVVVPGYTDSDH 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
           D   L + ++G+    K+ L+P++     ++                ++ +      ++ 
Sbjct: 180 DVHLLGQFIEGMTNIEKVELLPYHRLGAHKWAAMGEKYELEDVKPPTKESLEHIKTILEG 239

Query: 344 SGYSS 348
            G+  
Sbjct: 240 YGHIV 244


>gi|218546596|gb|ACK98944.1| predicted Fe-S-cluster redox enzyme [Aeromonas bestiarum]
          Length = 44

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 348 SPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
             +R  RG DI AACGQL      R  +  +  MQ  G
Sbjct: 1   VIVRKTRGDDIDAACGQLVGEVIDRTKRTMKNRMQQEG 38


>gi|295110857|emb|CBL24810.1| Pyruvate-formate lyase-activating enzyme [Ruminococcus obeum
           A2-162]
          Length = 245

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 80/243 (32%), Gaps = 55/243 (22%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC++ C FC+   T      +  T  ++L Q L  ++  G+  G                
Sbjct: 31  GCAMRCQFCHNPDTWKMGEGQQYTPSQLLKQALRYKNYWGNKGG---------------- 74

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234
             I + G GEPL   D + +   +A             TL TS        P  ++  E 
Sbjct: 75  --ITVSG-GEPLLQIDFLIEFFRMAKAE------GVHTTLDTSANPYTEKEPFYSKWLEL 125

Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           +     + + +  +  +    L   + K     ++   R    +   + +   +V++ G 
Sbjct: 126 MKYTDLVLLDIKQIDEEEHIKLTGQSNKN----ILTMARKLSDM--GKPMWIRHVLVPGG 179

Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFN-------PWPGCEY-----LCSDQKDIVTFS 338
           +D       L   +  +    ++ ++P++          G  Y         ++ I    
Sbjct: 180 SDKDEYLHRLADFIHTLKTVERVEVLPYHTLGVFKWEQLGIPYPLEGVRPPSEERINNAR 239

Query: 339 ECI 341
           E +
Sbjct: 240 EIL 242


>gi|56413979|ref|YP_151054.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362902|ref|YP_002142539.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56128236|gb|AAV77742.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094379|emb|CAR59893.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 265

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 48  GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + +
Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLD 141

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWS 194

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ I     
Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETIERVKG 254

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 255 ILEQYGHKV 263


>gi|228949221|ref|ZP_04111488.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810447|gb|EEM56801.1| Radical SAM domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 468

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 104/307 (33%), Gaps = 51/307 (16%)

Query: 58  QEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
           +E+R  +             E++  DG      +         + I+ +  P      LC
Sbjct: 60  KELRETIADI----------EELKRDG------KLFTEDDYKDLSIDLINRPT-YVKALC 102

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           ++    C+L+C +C+    K   N             R+++    G   I+ ++  S   
Sbjct: 103 LNVAHTCNLSCEYCFASQGKYNGN-------------RAIMSYEVGKRAIDFLLENSGNH 149

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
           +  ++   G GEPL  +  VK+ ++ A +           T +T+G +     + +EI  
Sbjct: 150 RNLDVDFFG-GEPLMAWKTVKQIVAYARNKEKEYKKTFHFTFTTNGML-----LNDEITD 203

Query: 238 MLAISLHAVSNDL--RNI-----LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            L   +H V   L  R          +N K     ++   + +      +          
Sbjct: 204 FLNQEMHNVVLSLDGRKKVHDYLRKTVNGKGSYNHIVPKFQEFVEKRGDKEYYVRGTYTH 263

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECIKRSGYSS 348
              D   D  ++  +  G   KI++ P    P   Y   ++   +I    E + +   + 
Sbjct: 264 NNVDFTNDIYHIADL--GFN-KISMEPVICNPLEPYALCEEDLLEIYNQYEILSKEMLN- 319

Query: 349 PIRTPRG 355
             R  +G
Sbjct: 320 --REEKG 324


>gi|218546608|gb|ACK98951.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
           smithia]
 gi|218546614|gb|ACK98955.1| predicted Fe-S-cluster redox enzyme [Aeromonas hydrophila]
          Length = 44

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 348 SPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
             +R  RG DI AACGQL      R  +  +  MQ  G
Sbjct: 1   VIVRKTRGDDIDAACGQLVGEVIDRTKRTMKNRMQQDG 38


>gi|325662287|ref|ZP_08150902.1| hypothetical protein HMPREF0490_01640 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471539|gb|EGC74760.1| hypothetical protein HMPREF0490_01640 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 303

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 14/83 (16%)

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC---------- 328
           RI     ++ G+ND+  +   +I  LK   +   INL+P++   G +Y            
Sbjct: 217 RIYIRIPVIGGVNDTEEEMEAMITFLKQSISVSQINLLPYHNIAGGKYDKLDIRYKGEAF 276

Query: 329 --SDQKDIVTFSECIKRSGYSSP 349
               ++ +  F     ++G+++ 
Sbjct: 277 TIPPKEQMEAFQRQFIQNGFANT 299


>gi|291459250|ref|ZP_06598640.1| radical SAM domain protein [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418504|gb|EFE92223.1| radical SAM domain protein [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 461

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 28/200 (14%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L CS+C+                      + L+    G   ++ ++  S
Sbjct: 98  ALCLLVSHRCNLNCSYCFASQGSFCG-------------KQGLMSFETGKRALDFLIENS 144

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSG--FVPNIA 229
             R+   +   G GEPL NF+  +K +          G +F   R TL+T+G      + 
Sbjct: 145 GSRRNLEVDFFG-GEPLVNFEVCRKLVSYARSIEKEHGKNF---RFTLTTNGVSVTDEVI 200

Query: 230 RVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
                    + +SL     V++  R   V    +   E ++   R +      R      
Sbjct: 201 EWANRECYNVVLSLDGRREVNDRFR---VDSGGRGSYERIVPNFRKFVKARGDRGYYMRG 257

Query: 287 VMLKGINDSPRDALNLIKIL 306
                  D   D  ++   L
Sbjct: 258 TFTHYNTDFTEDIFHMADAL 277


>gi|237730866|ref|ZP_04561347.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter sp. 30_2]
 gi|291085629|ref|ZP_06353548.2| pyruvate formate-lyase 1-activating enzyme [Citrobacter youngae
           ATCC 29220]
 gi|226906405|gb|EEH92323.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter sp. 30_2]
 gi|291070473|gb|EFE08582.1| pyruvate formate-lyase 1-activating enzyme [Citrobacter youngae
           ATCC 29220]
          Length = 255

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T +E++ +V+  R  +    G     G        
Sbjct: 38  GCLMRCLYCHNRDTWDTHGGKE--VTVDELMKEVVTYRHFMNASGGGVTASGGEAILQAE 95

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 96  FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 131

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    +  ++   YV++ G +
Sbjct: 132 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FARYLSNKD-IKVWIRYVVVPGWS 184

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 185 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 244

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 245 ILEQYGHKV 253


>gi|289423115|ref|ZP_06424930.1| arylsulfatase regulator [Peptostreptococcus anaerobius 653-L]
 gi|289156446|gb|EFD05096.1| arylsulfatase regulator [Peptostreptococcus anaerobius 653-L]
          Length = 457

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 74/200 (37%), Gaps = 29/200 (14%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+                        L+    G + I+ ++  S
Sbjct: 95  ALCLNVAHDCNLKCKYCFAKQGDFGG-------------KAELMPLEVGKKAIDYLIANS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL----SIASDSMGLSFSKRRITLSTSGFV---PN 227
             RK   I   G GEPL N++ V K+L           G +    R T++T+G +     
Sbjct: 142 GSRKNLEIDFFG-GEPLMNWE-VVKALVAYGREVEKPAGKNI---RYTITTNGVLLDDEK 196

Query: 228 IARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-E 285
           I  + E +  V+L++      ND   + + +N K   ++++   +         +  +  
Sbjct: 197 IDFINEHMHNVVLSLDGRKEVND--GMRLTLNDKGSYDLIVPKFQKLVAQRPKDKYYYVR 254

Query: 286 YVMLKGINDSPRDALNLIKI 305
               +   D  +D  +   +
Sbjct: 255 GTFTRDNLDFSKDVNHFYDL 274


>gi|251789946|ref|YP_003004667.1| pyruvate formate lyase-activating enzyme 1 [Dickeya zeae Ech1591]
 gi|247538567|gb|ACT07188.1| pyruvate formate-lyase activating enzyme [Dickeya zeae Ech1591]
          Length = 246

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V+  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKEVVTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A    G++       L T+GFV    P I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHEQGIN-----TCLDTNGFVRRYDPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  R    YV++   +
Sbjct: 123 VTD-LVMLDLKQLNDEVHQNLVGVSNHRTLE-----FARYLAKRNQ-RTWIRYVVVPDWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  K +    KI L+P++     ++                   +     
Sbjct: 176 DDDASAHLLGEFTKEMSNIEKIELLPYHELGKHKWTAMGEEYKLDGIKPPKADTMDRIKS 235

Query: 340 CIKRSGYSS 348
            +   G+  
Sbjct: 236 ILTSYGHKV 244


>gi|226330724|ref|ZP_03806242.1| hypothetical protein PROPEN_04644 [Proteus penneri ATCC 35198]
 gi|225201519|gb|EEG83873.1| hypothetical protein PROPEN_04644 [Proteus penneri ATCC 35198]
          Length = 215

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 25/151 (16%)

Query: 216 RITLSTSGFV----PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
              L T+GFV    P I  + +    ++ + L  V++++   LV ++ +  LE       
Sbjct: 70  HTCLDTNGFVRRYDPVIDELMDATD-LVMLDLKQVNDEIHQKLVGVSNQRTLE-----FA 123

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY--- 326
            Y      ++    YV++ G +D    A  L + +K +    K+ L+P++     ++   
Sbjct: 124 RYLAKR-GQKTWVRYVVVPGWSDDDDSAHRLGEFIKDMKNIEKVELLPYHELGKHKWVAL 182

Query: 327 ---------LCSDQKDIVTFSECIKRSGYSS 348
                        ++ +      ++  G+  
Sbjct: 183 GEEYKLDGIHPPSKETMENVKSILESYGHKV 213


>gi|90579339|ref|ZP_01235149.1| putative pyruvate formate-lyase 1 activating enzyme [Vibrio
           angustum S14]
 gi|90440172|gb|EAS65353.1| putative pyruvate formate-lyase 1 activating enzyme [Vibrio
           angustum S14]
          Length = 246

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 83/243 (34%), Gaps = 44/243 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        +   E  + +++        F                     
Sbjct: 29  GCLMRCKYCH-NRDTWDTHGGREATVDELMHEAKSYRHFMNSSGGG-------------- 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM--L 239
           V    GE +   + V+     A+ + G+        L T+G++     V +E +     +
Sbjct: 74  VTASGGEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVVDEVLDATDLV 127

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            + L  + +++   LV ++ K     ++D  R+       ++    YV++ G  D    A
Sbjct: 128 MLDLKQMDDNIHQNLVGVSNK----RVLDFARYLHQR--GQKTWIRYVVVPGYTDDEHSA 181

Query: 300 LNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSG 345
             L + +K +    KI L+P++     ++                ++ +    E +   G
Sbjct: 182 HQLGEFIKDMDNIEKIELLPYHQLGEHKWEAMGFEYPLAGVKPPKKETMEAIKEILSSYG 241

Query: 346 YSS 348
           +  
Sbjct: 242 HKV 244


>gi|34762773|ref|ZP_00143761.1| Fe-S OXIDOREDUCTASE (1.8.-.-) [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887574|gb|EAA24655.1| Fe-S OXIDOREDUCTASE (1.8.-.-) [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 284

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 80/237 (33%), Gaps = 38/237 (16%)

Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           C+L C FC    T   +L R       EIL ++      +                    
Sbjct: 28  CNLNCIFCECGATKKIQLERQRFKNMNEILNEIQSVLKDIKPDY---------------- 71

Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
              I   G GEP  + D  N+ K++       G      +I L T+  +    +V  E+ 
Sbjct: 72  ---ITFSGSGEPTLSLDLGNISKAIKEDLKYKG------KICLITNSLLLADKQVINELE 122

Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              ++  +L+ +  D+   +V  + +  ++ +     +    +   +I  E  +L+ IND
Sbjct: 123 YIDLIIPTLNTLKQDIFEKIVRPDYRTSVDEIRKGFINLNNSNYKGKIWIEIFILENIND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347
           +  + + +   L     + + I  N                  I+   + ++  G  
Sbjct: 183 NEENFIEIANFLNSENIRYDKIQLNTIDRVGAERNLKAISFDKILKAKKILEEYGLH 239


>gi|218781436|ref|YP_002432754.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218762820|gb|ACL05286.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 427

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 82/206 (39%), Gaps = 28/206 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C  C +  +              +  ++  +   P  ++I  + +  + R  + +V
Sbjct: 198 CNARCLGCLSLQKD-----------SPIPHSQDRINFTPTSQEIAQVALEHLSRVKNGVV 246

Query: 184 MMGMG---EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVML 239
             G G   EPL     +  ++++  +      S   I L+++G  P++  +  +     +
Sbjct: 247 SFGQGCEGEPLLATKVIAPAIAMIREQT----SDGTINLNSNGSRPDLLQQCLDSGLDSI 302

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            +S+++V  +        +  Y  + ++ +     G      ++  Y+ + G  DSP ++
Sbjct: 303 RVSMNSVRPECYEAYFRPS--YDFKDVLKSID-MAGFRGKW-VSINYLNMPGFTDSPEES 358

Query: 300 LNLIKILKGIPAKINLIPF---NPWP 322
              +K LK  P  +N+I +   N  P
Sbjct: 359 EAFLKFLKDHP--VNMIQWRNMNFNP 382


>gi|307690701|ref|ZP_07633147.1| pyruvate formate-lyase activating enzyme [Clostridium cellulovorans
           743B]
          Length = 229

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 82/238 (34%), Gaps = 45/238 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C +C+                             P     + +       K    
Sbjct: 17  GCNLRCLYCHNPD---------------TWACNGGTEYTPEQLLKKIVRFKPYFEKSGGG 61

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLA 240
           V    GEPL  ++ + ++L       G+        + T+G         +     V+L 
Sbjct: 62  VTFSGGEPLLQYNFLIEALK-LCKENGI-----HTAIDTAGVGMGNYEEVLKYTDLVLLD 115

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           I  +   ++++   +        +  ++A ++     +  ++   +V++ GIND+  D L
Sbjct: 116 IKHY---DEIKYKEITGRDNSEFKKFLEALKN-----SNSKVWIRHVVVPGINDTKEDVL 167

Query: 301 NLIKILKGIPA--KINLIPFN-------PWPGCEY-----LCSDQKDIVTFSECIKRS 344
            L + +K IP   K++L+P++          G EY         ++        +K +
Sbjct: 168 ALCEYIKDIPRIEKVDLLPYHVLGVNKYDVMGIEYRLKDLQPMSKEKAEELKAFLKEN 225


>gi|300716075|ref|YP_003740878.1| pyruvate formate lyase activating enzyme 1 [Erwinia billingiae
           Eb661]
 gi|299061911|emb|CAX59027.1| Pyruvate formate lyase activating enzyme 1 [Erwinia billingiae
           Eb661]
          Length = 246

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 86/249 (34%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++  V+  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKDVVSYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A  + G++       L T+GFV    P I  + E
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHAEGIN-----TCLDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++D+  +LV ++    L+        Y       R    YV++ G +
Sbjct: 123 VTD-LVMLDLKQINDDVHQVLVGVSNHRTLD-----FARYLAKK-KIRTWIRYVVVPGYS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++          G EY          + +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKAETMDRVKS 235

Query: 340 CIKRSGYSS 348
            ++  G+  
Sbjct: 236 ILEGYGHKV 244


>gi|315925707|ref|ZP_07921916.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621025|gb|EFV00997.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 251

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 28/214 (13%)

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
           LA+            E     +  R+    + +  GEPL  +     +  I        +
Sbjct: 48  LAQKGKKMTVQQVIREVKKDAAYYRRTGGGITISGGEPLMQYR--FTA-EILKAGQAQGW 104

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
                 + T+G+    A +   +  +    +   A +++L      ++       +I   
Sbjct: 105 ---NTAIETTGYTYEEAALDAVLPYLDLALMDAKAPNDELHKKFTGVSN-----EVIKKN 156

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY--- 326
                      I      + G+N S      +    K +  K ++L+P++     +Y   
Sbjct: 157 ARRIAKEAGNTI-IRVPTIPGVNASAETIREIADFAKDLGVKEVHLLPYHKLGENKYHLM 215

Query: 327 ----------LCSDQKDIVTFSECIKRSGYSSPI 350
                        +++++  F + ++ +G +  I
Sbjct: 216 GLEYKMPEDTKTPNREEMAAFKKVVESAGLACKI 249


>gi|294784683|ref|ZP_06749971.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_27]
 gi|294486397|gb|EFG33759.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_27]
          Length = 284

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 80/237 (33%), Gaps = 38/237 (16%)

Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           C+L C FC    T   +L R       EIL ++      +                    
Sbjct: 28  CNLNCIFCECGATKKIQLERQRFKNMNEILNEIQSVLKDIKPDY---------------- 71

Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
              I   G GEP  + D  N+ K++       G      +I L T+  +    +V  E+ 
Sbjct: 72  ---ITFSGSGEPTLSLDLGNISKAIKEDLKYKG------KICLITNSLLLADKQVINELE 122

Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              ++  +L+ +  D+   +V  + +  ++ +     +    +   +I  E  +L+ IND
Sbjct: 123 YIDLIIPTLNTLKQDIFEKIVRPDYRTSVDEIRKGFINLNNSNYKGKIWIEIFILENIND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347
           +  + + +   L     + + I  N                  I+   + ++  G  
Sbjct: 183 NEENFIEIANFLNSENIRYDKIQLNTIDRVGAERNLKAISFDKILKAKKILEEYGLH 239


>gi|293391864|ref|ZP_06636198.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952398|gb|EFE02517.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 246

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 80/244 (32%), Gaps = 48/244 (19%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              +T EE++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDLHGGKE--ITVEELMKEVVTYRHFMNATGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +    D+ G              +   I  + +   +
Sbjct: 87  FVRDWFRACKAEG----------IHTCLDTNGF----------VRHYDHVIDELIDVTDL 126

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +L + L  +++ +   L+ +  K  LE        Y    N   +   YV++ G  DS  
Sbjct: 127 VL-LDLKELNDKVHQNLIGVPNKRTLE-----FAKYLRKRNQ-PVWIRYVVVPGYTDSDH 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
           D   L + ++G+    K+ L+P++     ++                ++ +      ++ 
Sbjct: 180 DVHLLGQFIEGMTNIEKVELLPYHRLGAHKWAAMGEKYELEDVKPPTKESLEHIKTILEG 239

Query: 344 SGYS 347
            G++
Sbjct: 240 YGHT 243


>gi|315652215|ref|ZP_07905210.1| radical SAM domain protein [Eubacterium saburreum DSM 3986]
 gi|315485521|gb|EFU75908.1| radical SAM domain protein [Eubacterium saburreum DSM 3986]
          Length = 472

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G   ++ +V  S
Sbjct: 116 ALCLHIAHDCNLACKYCFAQE---------GEYHGR----RALMSFDIGKRALDFLVANS 162

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231
             RK   +   G GEPL N+  VK+ +         +  K R T++T+G +    I    
Sbjct: 163 GNRKNLEVDFFG-GEPLMNWQVVKELVKYGRSLEEPNNKKFRFTITTNGMLLNDEIMEFC 221

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      ND+  +      K   + ++     +      +         +
Sbjct: 222 NKEMSNVVLSLDGRKEVNDI--MRPTRGGKGSYDTIVPKFVKFAKSRGTKDYYIRGTFTR 279

Query: 291 GINDSPRDALNLIKI 305
              +  +D L+   +
Sbjct: 280 NNLEFSKDVLHFADL 294


>gi|253688115|ref|YP_003017305.1| pyruvate formate-lyase activating enzyme [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251754693|gb|ACT12769.1| pyruvate formate-lyase activating enzyme [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 246

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 77/245 (31%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           ++   D+ G              + P I  + +    
Sbjct: 87  FVRDWFRACKAEG----------INTCLDTNGF----------VRRYDPVIDELLDVSD- 125

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++D+   LV ++    L+        Y    N  R    YV++ G +D   
Sbjct: 126 LVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWSDDDA 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
            A  L +  K +    KI L+P++     ++                   +      ++ 
Sbjct: 180 SAHKLGEFTKDMTNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPKADTMDRIKSILES 239

Query: 344 SGYSS 348
            G+  
Sbjct: 240 YGHKV 244


>gi|258592679|emb|CBE68988.1| Radical SAM domain protein [NC10 bacterium 'Dutch sediment']
          Length = 314

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 77/204 (37%), Gaps = 37/204 (18%)

Query: 124 CSLTCSFCYTGTQKLVRN-----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           C+  C +C  G    + N     +  ++I+ QV  A ++                    +
Sbjct: 27  CNWNCVYCQLGRSTPMINERRDYVPPDDIIAQVKEALAVHRPG----------------E 70

Query: 179 ISNIVMMGMGEP-LCN-FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           I  +  +G GEP L      + + + + +D          + + T+G +     V EE+ 
Sbjct: 71  IDWVTFVGSGEPTLHASLGKMIRQVKVLTD--------IPVAVITNGSLLYRPEVREELA 122

Query: 237 VMLAIS--LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              A+   L A +  L   +         E L+D    +     + ++  E +++KG+ND
Sbjct: 123 AADAVLPTLDAGTESLYRKINRPWPDLSFERLVDGLIAF-RREFSGKMWIEIMLIKGVND 181

Query: 295 SPRDALNLIKILKGIP---AKINL 315
           +     +L  +L+ I      INL
Sbjct: 182 TETALKDLAAVLRRIGPDEVHINL 205


>gi|156934609|ref|YP_001438525.1| pyruvate formate lyase-activating enzyme 1 [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156532863|gb|ABU77689.1| hypothetical protein ESA_02443 [Cronobacter sakazakii ATCC BAA-894]
          Length = 246

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 87  FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++        ++  ++        +    YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYISAK--GIKTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 236 ILEQYGHKV 244


>gi|228912462|ref|ZP_04076141.1| Radical SAM domain protein [Bacillus thuringiensis IBL 200]
 gi|228847177|gb|EEM92152.1| Radical SAM domain protein [Bacillus thuringiensis IBL 200]
          Length = 468

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 105/307 (34%), Gaps = 51/307 (16%)

Query: 58  QEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117
           +E+R  +             E++  DG      +         + I+ +  P      LC
Sbjct: 60  KEIRETIADI----------EELKRDG------KLFTDDDYKDLSIDLINRPT-YVKALC 102

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           ++    C+L+C +C+    K   N             R+++    G   I+ ++  S   
Sbjct: 103 LNVAHTCNLSCEYCFASQGKYNGN-------------RAIMSYEVGKRAIDFLLENSGNH 149

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
           +  ++   G GEPL  +  VK+ ++ A +         R T +T+G +     + +EI  
Sbjct: 150 RNLDVDFFG-GEPLMAWKTVKQIVAYARNKEEEYKKTFRFTFTTNGML-----LNDEITD 203

Query: 238 MLAISLHAVSNDL--RNI-----LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            L   +H V   L  R          +N K     ++   + +      +          
Sbjct: 204 FLNQDMHNVVLSLDGRKKVHDYLRKTVNGKGSYNHIVPKFKEFVEKRGDKEYYVRGTYTH 263

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECIKRSGYSS 348
              D   D  ++  +  G   KI++ P    P   Y   ++   +I    E + +   + 
Sbjct: 264 NNVDFTNDIYHIADL--GFN-KISMEPVICNPREPYALGEEDLLEIYNQYEILSKEMLN- 319

Query: 349 PIRTPRG 355
             R  +G
Sbjct: 320 --REEKG 324


>gi|16759841|ref|NP_455458.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142386|ref|NP_805728.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|167550356|ref|ZP_02344113.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168230866|ref|ZP_02655924.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236882|ref|ZP_02661940.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168240823|ref|ZP_02665755.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168263542|ref|ZP_02685515.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168822927|ref|ZP_02834927.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194446466|ref|YP_002040168.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194448873|ref|YP_002044962.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194468500|ref|ZP_03074484.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194735970|ref|YP_002114021.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197248756|ref|YP_002145888.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197263733|ref|ZP_03163807.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|200389762|ref|ZP_03216373.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204930015|ref|ZP_03221036.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|213161616|ref|ZP_03347326.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213417319|ref|ZP_03350463.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213424589|ref|ZP_03357372.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213648477|ref|ZP_03378530.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213851463|ref|ZP_03381361.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238913256|ref|ZP_04657093.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|25285894|pir||AH0612 pyruvate formate-lyase 1 activating enzyme [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502134|emb|CAD05370.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138016|gb|AAO69577.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|194405129|gb|ACF65351.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194407177|gb|ACF67396.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194454864|gb|EDX43703.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711472|gb|ACF90693.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197212459|gb|ACH49856.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197241988|gb|EDY24608.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290138|gb|EDY29495.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|199602207|gb|EDZ00753.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204321009|gb|EDZ06210.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205324549|gb|EDZ12388.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205334729|gb|EDZ21493.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339962|gb|EDZ26726.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205340734|gb|EDZ27498.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205347768|gb|EDZ34399.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|322616401|gb|EFY13310.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619651|gb|EFY16526.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622653|gb|EFY19498.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629802|gb|EFY26577.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632476|gb|EFY29222.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637029|gb|EFY33732.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641610|gb|EFY38247.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646103|gb|EFY42619.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649595|gb|EFY46026.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654103|gb|EFY50426.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658635|gb|EFY54897.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663492|gb|EFY59694.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670228|gb|EFY66368.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671464|gb|EFY67586.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676820|gb|EFY72887.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682745|gb|EFY78764.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686424|gb|EFY82406.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323195947|gb|EFZ81114.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199765|gb|EFZ84854.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202758|gb|EFZ87794.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323209029|gb|EFZ93966.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211505|gb|EFZ96344.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323218010|gb|EGA02725.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219918|gb|EGA04394.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226858|gb|EGA11041.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229812|gb|EGA13935.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233037|gb|EGA17133.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240772|gb|EGA24814.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243088|gb|EGA27109.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249749|gb|EGA33651.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252778|gb|EGA36616.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255845|gb|EGA39592.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260015|gb|EGA43643.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267984|gb|EGA51463.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269831|gb|EGA53280.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 265

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 48  GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + +
Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLD 141

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWS 194

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 254

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 255 ILEQYGHKV 263


>gi|229825163|ref|ZP_04451232.1| hypothetical protein GCWU000182_00514 [Abiotrophia defectiva ATCC
           49176]
 gi|229790535|gb|EEP26649.1| hypothetical protein GCWU000182_00514 [Abiotrophia defectiva ATCC
           49176]
          Length = 479

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 80/217 (36%), Gaps = 24/217 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+ G  +   +             R ++    G    + ++  S
Sbjct: 109 ALCLNIAHDCNLACRYCFAGEGEYQGD-------------RGMMSYEVGKAAFDFLIKNS 155

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231
             RK   +   G GEPL N++ VK  ++   +   +     R TL+T+G +    I    
Sbjct: 156 GHRKNLEVDFFG-GEPLMNWNTVKMLVAYGRELEKIHDKNFRFTLTTNGMLLNDEIIDFC 214

Query: 232 -GEEIGVMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
             E   V+L+I     V + +R         Y +  +I   + +    + +         
Sbjct: 215 NKEMTNVVLSIDGRKCVHDYMRPTRGGNKSSYDI--IIPKLKDFAAKRDKKEYYVRGTYT 272

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
               D   D L+L    +G   +I+L P    P   Y
Sbjct: 273 SKNLDFAADVLHLAD--EGF-TEISLEPVVSLPSEPY 306


>gi|161353606|ref|NP_459945.2| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|162139598|ref|YP_215911.2| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|168466557|ref|ZP_02700419.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|198246171|ref|YP_002214893.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|224582779|ref|YP_002636577.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|195630908|gb|EDX49494.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197940687|gb|ACH78020.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|224467306|gb|ACN45136.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|267992705|gb|ACY87590.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|312911957|dbj|BAJ35931.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321223293|gb|EFX48362.1| Pyruvate formate-lyase activating enzyme [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322713963|gb|EFZ05534.1| Pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|326622646|gb|EGE28991.1| Pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 265

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 48  GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + +
Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLD 141

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWS 194

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 254

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 255 ILEQYGHKV 263


>gi|260597299|ref|YP_003209870.1| pyruvate formate lyase-activating enzyme 1 [Cronobacter turicensis
           z3032]
 gi|260216476|emb|CBA29623.1| Pyruvate formate-lyase 1-activating enzyme [Cronobacter turicensis
           z3032]
          Length = 246

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 87  FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++        ++  ++        +    YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYISAK--GIKTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 236 ILEQYGHKV 244


>gi|188534276|ref|YP_001908073.1| Pyruvate formate lyase activating enzyme 1 [Erwinia tasmaniensis
           Et1/99]
 gi|188029318|emb|CAO97195.1| Pyruvate formate lyase activating enzyme 1 [Erwinia tasmaniensis
           Et1/99]
          Length = 254

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 80/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         ++  E++  VL  R  +    G     G        
Sbjct: 37  GCLMRCLYCHNRDTWDTHGGKE--VSVAELMDDVLSYRHYINASGGGVTASGGEAILQAE 94

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
            + +                 ++      + G+        L T+GFV      I  + +
Sbjct: 95  FVRD---------------WFRACR----AKGI-----HTCLDTNGFVRRYDAVIDELLD 130

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  V+++    LV ++ +  L+        Y    N  R    YV++ G +
Sbjct: 131 VTD-LVMLDLKQVNDERHQTLVGVSNRRTLD-----FARYLTRRN-IRTWIRYVVVPGYS 183

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                 + +     
Sbjct: 184 DDDASAHQLGEFTRDMTNVEKIELLPYHELGKHKWLAMGEAYGLEGVRPPKAETLERVKH 243

Query: 340 CIKRSGYSS 348
            ++  G+S 
Sbjct: 244 ILESYGHSV 252


>gi|225574938|ref|ZP_03783548.1| hypothetical protein RUMHYD_03017 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037785|gb|EEG48031.1| hypothetical protein RUMHYD_03017 [Blautia hydrogenotrophica DSM
           10507]
          Length = 374

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 80/254 (31%), Gaps = 55/254 (21%)

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
             C+  C++         R  +  EI+ ++L       D  G     G            
Sbjct: 157 FDCANACAYEAARISGKYR--SVGEIM-RILRRDREYWDEKGGPGFSG------------ 201

Query: 182 IVMMGMGEPLCN----FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
                 GEP+      ++ + K         G++ S   I  + S       ++ E I  
Sbjct: 202 ------GEPMVQKEFLYEVLLK-----CKEEGMNTS---IETTASVDTETFLKIMELIDF 247

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
                 H  S   R      N     E ++         S   R+     +++G ND+  
Sbjct: 248 AFIDVKHMDSQKHREKTGIGN-----ERILSNIEALVRNSWKGRLVLRMPVIEGYNDTLE 302

Query: 298 DALNLIKILKGI-PAKINLIPFNP------------WPGCEYLCSDQKDIVTFSECIKRS 344
           +A   I  +K +   +INL+PF+             +P  EY  ++ + +    +     
Sbjct: 303 NAEATIAFMKRLGLFEINLLPFHRLGTSKWEQLGMEYPYAEYSPTEDEVMERLQDFYLDH 362

Query: 345 GYSSPIRTPRGLDI 358
             +  +    G D+
Sbjct: 363 RIACYV----GDDV 372


>gi|320085207|emb|CBY94993.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 292

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 75  GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 132

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + +
Sbjct: 133 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLD 168

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 169 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWS 221

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 222 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 281

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 282 ILEQYGHKV 290


>gi|170727228|ref|YP_001761254.1| pyruvate formate lyase-activating enzyme 1 [Shewanella woodyi ATCC
           51908]
 gi|169812575|gb|ACA87159.1| pyruvate formate-lyase activating enzyme [Shewanella woodyi ATCC
           51908]
          Length = 246

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 83/247 (33%), Gaps = 52/247 (21%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T      +++  EE++ Q++  R      P  E   G V  S G  I
Sbjct: 29  GCLMRCQYCHNRDTWDLHGGKDIEVEELMSQIISYR------PFLESSGGGVTASGGEAI 82

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGEEI 235
                +           + ++        G+        L T+GFV    P I  + +  
Sbjct: 83  LQAEFVS---------ALFEACK----KEGI-----HTCLDTNGFVRKYTPIIDELLDNT 124

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
            ++L + +  + +     L  ++        +    H       ++    YV++ G  D 
Sbjct: 125 DLVL-LDIKHIDDQRHIDLTKVSNH----RTLQFAEHL--HKRQQKTWIRYVVVGGYTDD 177

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECI 341
              A  L   LK +    K+ L+P++     ++                 + +    +  
Sbjct: 178 IDSAKKLADFLKPMTNVEKVELLPYHELGKHKWEAMGEEYELNDISPPSGETMEQIKKVF 237

Query: 342 KRSGYSS 348
             +G ++
Sbjct: 238 VDAGLNA 244


>gi|205358099|ref|ZP_02575805.2| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|62127127|gb|AAX64830.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|205327467|gb|EDZ14231.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|323129235|gb|ADX16665.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|326627221|gb|EGE33564.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 292

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 75  GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 132

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + +
Sbjct: 133 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLD 168

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 169 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWS 221

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 222 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 281

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 282 ILEQYGHKV 290


>gi|205352177|ref|YP_002225978.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207856361|ref|YP_002243012.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|16419481|gb|AAL19904.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|205271958|emb|CAR36802.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|206708164|emb|CAR32457.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261246186|emb|CBG23990.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|301157513|emb|CBW17003.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|332987861|gb|AEF06844.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 274

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 57  GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 114

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + +
Sbjct: 115 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLD 150

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 151 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWS 203

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 204 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 263

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 264 ILEQYGHKV 272


>gi|149909997|ref|ZP_01898646.1| putative pyruvate formate-lyase 1 activating enzyme [Moritella sp.
           PE36]
 gi|149807011|gb|EDM66970.1| putative pyruvate formate-lyase 1 activating enzyme [Moritella sp.
           PE36]
          Length = 258

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 76/243 (31%), Gaps = 44/243 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+       R+              S           E +   +        
Sbjct: 41  GCLMRCLYCH------NRDS---------WDLHSGKDTTVDELIRELISYKAFMLATGGG 85

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM--L 239
           V    GE +   + V+   + A              L T+G++     V +E + V   +
Sbjct: 86  VTASGGEAMLQPEFVRDFFTAAQAE------GVNTCLDTNGYIRKYTDVIDEVLDVTDLV 139

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            + L  V++D+   L  ++ K  LE        Y    N  +    YV++ G  D    A
Sbjct: 140 MLDLKQVNDDIHQELAGVSNKRTLE-----FAEYLEKRNQ-KTWIRYVVVPGYTDDDASA 193

Query: 300 LNLIKILKGIPA--KINLIPFNP-------WPGCEY-----LCSDQKDIVTFSECIKRSG 345
             L K ++ +    K+ L+P++          G +Y         +  +      +    
Sbjct: 194 HQLGKFIQHMSNIEKVELLPYHELGLHKWKTMGYDYPLDGVPPPSKDTMDRIQNILLEYK 253

Query: 346 YSS 348
            + 
Sbjct: 254 DNV 256


>gi|258544998|ref|ZP_05705232.1| pyruvate formate-lyase 1-activating enzyme [Cardiobacterium hominis
           ATCC 15826]
 gi|258519801|gb|EEV88660.1| pyruvate formate-lyase 1-activating enzyme [Cardiobacterium hominis
           ATCC 15826]
          Length = 247

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 89/270 (32%), Gaps = 59/270 (21%)

Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQ--KLVRNLTAEEILLQVLLAR 155
             IET    +       V +Q GC + C +C+   T        R +T +E++ QV+  R
Sbjct: 7   HSIETCGTVDGPGLRFVVFTQ-GCLMRCLYCHNRDTWDMETDKSRKITVDELMQQVIQYR 65

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-IASDSMGLSFSK 214
             L    G                   V    GE L   +     +              
Sbjct: 66  FYLKATGGG------------------VTASGGESLLQPE----FIRDWFVACKAYGI-- 101

Query: 215 RRITLSTSGFVPNIARVGEEIGVM---LAISLHAVSNDLRNIL--VPINRKYPLEMLIDA 269
               L T+G+  +  +  EE+      + + L  + N++   L  VP NR          
Sbjct: 102 -HTCLDTNGYARHYDKTLEELLDHTDLVMLDLKQLDNEIHKKLVGVPNNRTLMFAE---- 156

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY- 326
             H    +   RI   YV++ G +D    A  L + +  +    K+ L+P++     ++ 
Sbjct: 157 --HLQKRNQLTRI--RYVIVPGYSDDDHSAHLLGQYIAPMDNIEKVELLPYHELGAHKWA 212

Query: 327 -----------LCSDQKDIVTFSECIKRSG 345
                          ++ +   ++ IK  G
Sbjct: 213 LCGDTYQLEGVHPPPKETVEHIADIIKSYG 242


>gi|218887708|ref|YP_002437029.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758662|gb|ACL09561.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 427

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 61/164 (37%), Gaps = 25/164 (15%)

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEE 234
           +I+ I + G G+P+ N     ++L +  +    +    S   +     G  P++ R+ E 
Sbjct: 77  RITVIGIAGPGDPMANPAETLETLRLVHERHPELLFCLSSNGL-----GLPPHLDRLKEL 131

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRI 282
               + ++++AV   +   L    R               L   +++ R          +
Sbjct: 132 GVTHVTVTINAVDPAIGEKLYSWVRDDKVVWRGREAAELLLARQLESVRGLVER--GMVV 189

Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325
               +++ G+ND       + +++  + A I N+IP  P     
Sbjct: 190 KVNTILVPGVNDR--HVEEVARVVGELGATIQNIIPLKPTADTP 231


>gi|261821276|ref|YP_003259382.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium wasabiae
           WPP163]
 gi|261605289|gb|ACX87775.1| pyruvate formate-lyase activating enzyme [Pectobacterium wasabiae
           WPP163]
          Length = 246

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 77/245 (31%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           ++   D+ G              + P I  + +    
Sbjct: 87  FVRDWFRACKAEG----------INTCLDTNGF----------VRRYDPVIDELLDVSD- 125

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++D+   LV ++    L+        Y    N  R    YV++ G +D   
Sbjct: 126 LVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWSDDDA 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
            A  L +  K +    KI L+P++     ++                   +      ++ 
Sbjct: 180 SAHKLGEFTKDMTNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPKADTMDRVKSILES 239

Query: 344 SGYSS 348
            G+  
Sbjct: 240 YGHKV 244


>gi|15222863|ref|NP_175427.1| pathogenesis-related protein, putative [Arabidopsis thaliana]
 gi|332194391|gb|AEE32512.1| putative pathogenesis-related protein [Arabidopsis thaliana]
          Length = 226

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 341 IKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQI 382
           +K    ++ +R  RGL   AACGQL++  ++ P +   E ++
Sbjct: 156 LKSRKITASVRQTRGLGASAACGQLRNKFQKSPSLATAEGEV 197


>gi|332702062|ref|ZP_08422150.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552211|gb|EGJ49255.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 445

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 68/200 (34%), Gaps = 28/200 (14%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITL 219
           P         +     +I+ + + G G+P  N +   +++ +        L        +
Sbjct: 60  PPQAAAYLDRVLEKEPRITVVGIAGPGDPFANAEATLETIRLIRERHPEML------FCV 113

Query: 220 STS--GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP------------LEM 265
           ST+  G  P + RV +     + ++++AV   +        R               L  
Sbjct: 114 STNGLGLPPYLDRVKDAGITHMTVTVNAVDPAVGKRFYSWVRDGERTLHGREAAELLLMR 173

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGC 324
            +++ R          +    ++  G ND       L K +  +    +N++P +P    
Sbjct: 174 QLESIRGLKER--GITVKVNTILTPGYNDG--HIEELAKAMASMGVDMLNVMPLHPTADT 229

Query: 325 EYLCSDQKDIVTFSECIKRS 344
            +    + +   F E ++++
Sbjct: 230 PFEGIIEPN-KAFVEKLRKA 248


>gi|255523841|ref|ZP_05390805.1| glycyl-radical enzyme activating protein family [Clostridium
           carboxidivorans P7]
 gi|255512403|gb|EET88679.1| glycyl-radical enzyme activating protein family [Clostridium
           carboxidivorans P7]
          Length = 300

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 94/275 (34%), Gaps = 55/275 (20%)

Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151
            +  + R T C      C                  C+ C   T     N TA E + + 
Sbjct: 48  IMFFEERCTGCGICAKRCPQNAISIKEGHSVVDEEKCALCGKCTD-FCPN-TAREYVGKD 105

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +    L+ +    E                +   G GEPL + D + + L       G+ 
Sbjct: 106 VTVSELMKEIMKDEVFYDESGGG-------VTFSG-GEPLIHIDFLNEVLKK-CKEKGI- 155

Query: 212 FSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
                 T+ TSG VP  ++ ++ +++ + L   +  + N+        + KY      + 
Sbjct: 156 ----HTTVDTSGCVPWESLEKILDKVDLFL-YDIKFMDNEK-------HIKYIGSENTNI 203

Query: 270 CRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL 327
             +   LS+   RI     ++ G+ND      + I+ L  I A ++NL+P++     +Y 
Sbjct: 204 LENLKKLSDKGCRIFVRMPIVAGVNDDAYHIDSAIEFLSHINAEQVNLLPYHKMGMDKYR 263

Query: 328 C------------SDQKDIVTFSECIKRSGYSSPI 350
                           K +   S   K+SG    I
Sbjct: 264 RLKMTYKLSGNEKPSDKVMEEISNKFKKSGIKIKI 298


>gi|227111995|ref|ZP_03825651.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 246

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 77/245 (31%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           ++   D+ G              + P I  + +    
Sbjct: 87  FVRDWFRACKAEG----------INTCLDTNGF----------VRRYDPVIDELLDVSD- 125

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++D+   LV ++    L+        Y    N  R    YV++ G +D   
Sbjct: 126 LVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWSDDDA 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
            A  L +  K +    KI L+P++     ++                   +      ++ 
Sbjct: 180 SAHKLGEFTKDMTNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPKADTMDRVKSILES 239

Query: 344 SGYSS 348
            G+  
Sbjct: 240 YGHKV 244


>gi|188586401|ref|YP_001917946.1| Radical SAM domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351088|gb|ACB85358.1| Radical SAM domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 489

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 82/230 (35%), Gaps = 34/230 (14%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           I +     LCV     C++ CS+C+        +++  +I                 + +
Sbjct: 110 IGKSGIKALCVHPAHDCNMRCSYCFAEGGSYSHDISYMDI-------------DTAKQAV 156

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGF 224
           E +V  S  RK   I   G GEPL NF  ++K +      ++  G  F   + TL+T+G 
Sbjct: 157 EFLVNNSGDRKNLEIDFFG-GEPLLNFPVIEKCVAHAKELANKHGKHF---KFTLTTNGL 212

Query: 225 V--PNIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
               +I          + +SL     + ++ R  L   N  Y  E ++ A +       A
Sbjct: 213 ALTDSIIDFLVSNRFAVVMSLDGRKEIHDNYRTDL-AGNSTY--EKILPAFKKLLNKMQA 269

Query: 280 R---RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
                        +   D   D  ++  +  G  ++I+L P        +
Sbjct: 270 HDYCEYYIRGTYTRKNLDFSEDVFHIADL--GF-SRISLEPVTGEENSSF 316


>gi|299142548|ref|ZP_07035679.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris C735]
 gi|298575983|gb|EFI47858.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris C735]
          Length = 242

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 35/213 (16%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C FC+   T  Q   R +TA+E+L Q    RS  G+  G                
Sbjct: 26  GCPMRCLFCHNPDTWKQDKTRPMTADELLNQAEKYRSYWGEKGG---------------- 69

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
             I + G GE L   D + +    A     +  L  S +  T     +     R+ +   
Sbjct: 70  --ITVSG-GEALLQIDFLIELFEKAHARSINTCLDTSAQPFT-RKGTWFAKFERLMKVTD 125

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            +L    H   ++ R +      K+    ++D  R+   +   + +   +V++  + D+ 
Sbjct: 126 TVLLDIKHIREDEHRKL-----TKFSNSNILDCARYLSDI--QKPVWIRHVLIPKLTDND 178

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
                L   LK +    +I+++P++     +Y 
Sbjct: 179 AYLHELAAFLKTLHNIERIDILPYHTLGTYKYE 211


>gi|302389502|ref|YP_003825323.1| Radical SAM domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200130|gb|ADL07700.1| Radical SAM domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 463

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 30/209 (14%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
              +K+   LC++    C+L C +C+             E        R L+        
Sbjct: 88  LRQKKNVKALCLNVAHDCNLRCKYCFASKG-----HYNGE--------RRLMDKKVAQSA 134

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDN---VKKSLSIASDSMGLSFSKRRITLST-- 221
           ++ ++  S   K   +   G GEPL  FD    V        D  G  F     T++T  
Sbjct: 135 VDFLIEHSGNLKNLEVDFFG-GEPLMAFDTIKYVISYARSLEDRCGKRF---HFTVTTNC 190

Query: 222 SGFVPNIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           +     I     E    + +SL     V++ +R   V  +     + +++  +    L  
Sbjct: 191 TILNDEIIDYLHENMDNIVMSLDGRKRVNDAIR---VKADGSGSYDQVVENIKRIVKLRK 247

Query: 279 AR--RITFEYVMLKGINDSPRDALNLIKI 305
                        +   D   D  +L  +
Sbjct: 248 RDGKDYYVRGTFTRHNLDFAEDVFHLADL 276


>gi|134301127|ref|YP_001114623.1| radical SAM domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134053827|gb|ABO51798.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1]
          Length = 450

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 99/294 (33%), Gaps = 42/294 (14%)

Query: 50  FQGMSDISQE-VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI 108
            +      +E ++      +S    E   E+I       +L        G        Y 
Sbjct: 32  LEEYQKHPKEEIQQRFADKYSPDEIEQALEEIKSLVDEGFLFTTDPHQEG--------YR 83

Query: 109 PEKSR--GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
           P++      LC+ +   C+L C +C+ G  K                   LL    G   
Sbjct: 84  PKRDGVVKALCLHAAHDCNLRCKYCFAGEGKFGG-------------PSGLLSAETGRAA 130

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-----RITLST 221
           I+ ++  S  RK   I   G GEPL NF  +K+ +       G   +K      + TL+T
Sbjct: 131 IDFLIQHSGNRKHVEIDFFG-GEPLLNFKVIKELV-----PYGRERAKEAGKEIKYTLTT 184

Query: 222 SGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSN 278
           +G +    + +   +  +   +SL     ++ + + P    +     ++ A + Y     
Sbjct: 185 NGVLLNKEVQQFLIDNQMAAVLSLDG-RPEVHDQMRPAPGGRGSYTRVVSAFQEYVQQEP 243

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
                      +   D  RD L++ +  +G    I++ P       +Y    + 
Sbjct: 244 PAGYVIRGTFTRHNLDFSRDVLHMAE--QGFK-DISVEPVVAGSDTDYAFKPED 294


>gi|219870425|ref|YP_002474800.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus parasuis
           SH0165]
 gi|219690629|gb|ACL31852.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus parasuis
           SH0165]
          Length = 246

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 86/244 (35%), Gaps = 46/244 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+       R+                          E +      R     
Sbjct: 29  GCLMRCKYCH------NRDT---------WDLEGGKEISVEDLMKEVVTYKHFMRATGGG 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM--L 239
           V    GE +   + V+     A  + G+        L T+GFV N + + +E + V   +
Sbjct: 74  VTASGGEAVLQMEFVRDWFR-ACKAEGID-----TCLDTNGFVRNYSELVDEMLDVTDLV 127

Query: 240 AISLHAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
            + L  ++ ++ ++ +   N++      +D  R Y    N  R    YV++ G  D+  D
Sbjct: 128 MLDLKQLNEEIHKDFIGVSNKR-----TLDFAR-YLHKRNQ-RTWIRYVVVPGYTDADED 180

Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRS 344
              L + ++G+    K+ L+P++     ++                ++ +      I+  
Sbjct: 181 IHLLGQFIQGMDNIEKVELLPYHRLGAHKWKTLGLEYELEDVMPPTKESLEHIKGIIESY 240

Query: 345 GYSS 348
           G++ 
Sbjct: 241 GHTV 244


>gi|262404211|ref|ZP_06080766.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC586]
 gi|262349243|gb|EEY98381.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC586]
          Length = 246

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 82/246 (33%), Gaps = 50/246 (20%)

Query: 123 GCSLTCSFCY------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           GC   C +C+      T T    R +T EEI+ +    R  +    G     G       
Sbjct: 29  GCLFRCKYCHNRDTWDTHTG---REVTVEEIIKEAKSYRHFMNASGGGITCSGGEAMLQP 85

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
             + ++      E           +    D+ G    K         F P I  V E   
Sbjct: 86  EFVRDLFRSAKAEG----------IHTCLDTNGY-IRK---------FTPVIDEVLEVTD 125

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            ++ + +  + +++   L+ ++ K      +D  R+   +   ++    YV++ G  D  
Sbjct: 126 -LVMLDIKQMDDEIHQDLIGVSNK----RTLDFARYLHQI--GQKTWLRYVVVPGYTDDE 178

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
             A  L + +KG+    KI L+P++     ++                ++ +      ++
Sbjct: 179 ASAHQLGEFIKGMENIEKIELLPYHKLGAHKWEAMGEEYPLEGVNPPSKETMDKIVAILE 238

Query: 343 RSGYSS 348
               + 
Sbjct: 239 LYHSNV 244


>gi|299143206|ref|ZP_07036286.1| pyruvate formate-lyase 1-activating enzyme [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517691|gb|EFI41430.1| pyruvate formate-lyase 1-activating enzyme [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 248

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 79/229 (34%), Gaps = 46/229 (20%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC L C+FC+   T      RN+T EEI+ +    +    +  G                
Sbjct: 26  GCPLRCAFCHNVDTQNPFGGRNITVEEIVERSRKMKPYFRNGKGG--------------- 70

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN--IARVGEEIGV 237
             +   G GEP  +   +  ++               +T+ TSG         + EE  +
Sbjct: 71  --VTFSG-GEPTLDGKFLLDAIKAVKAE------GIHVTVDTSGVGDQKYYDEIIEEADL 121

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +L + +   +      +   N   PL+  I+A        +   +   +VM+  + DS  
Sbjct: 122 IL-LDIKHYNAIGFKNITERNIS-PLKKFIEAVER-----HNTPVWIRHVMMPKVTDSKY 174

Query: 298 DALNLIKI---LKGIPAKINLIPFNPWP-------GCEYLCSDQKDIVT 336
               L +    +K    KI ++P++          G EY   D + +  
Sbjct: 175 HMDKLCEFIAPIKDKIEKIEILPYHTMGVHKYEDLGIEYKLKDMEAMDK 223


>gi|167854968|ref|ZP_02477743.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus parasuis
           29755]
 gi|167853925|gb|EDS25164.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus parasuis
           29755]
          Length = 246

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 86/244 (35%), Gaps = 46/244 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+       R+                          E +      R     
Sbjct: 29  GCLMRCKYCH------NRDT---------WDLEGGKEISVEDLMKEVVTYKHFMRATGGG 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM--L 239
           V    GE +   + V+     A  + G+        L T+GFV N + + +E + V   +
Sbjct: 74  VTASGGEAVLQMEFVRDWFR-ACKAEGID-----TCLDTNGFVRNYSELVDEMLDVTDLV 127

Query: 240 AISLHAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
            + L  ++ ++ ++ +   N++      +D  R Y    N  R    YV++ G  D+  D
Sbjct: 128 MLDLKQLNEEIHKDFIGVSNKR-----TLDFAR-YLHKRNQ-RTWIRYVVVPGYTDADED 180

Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRS 344
              L + ++G+    K+ L+P++     ++                ++ +      I+  
Sbjct: 181 IHLLGQFIQGMDNIEKVELLPYHRLGAHKWKILGLEYELEDVMPPTKESLEHIKGIIESY 240

Query: 345 GYSS 348
           G++ 
Sbjct: 241 GHTV 244


>gi|295096397|emb|CBK85487.1| pyruvate formate-lyase 1-activating enzyme [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 246

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 86/249 (34%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A    G+        L T+GFV    P I  + E
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHKEGI-----HTCLDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++        ++  ++        +    YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYIANK--GVKTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 236 ILEQYGHKV 244


>gi|212703419|ref|ZP_03311547.1| hypothetical protein DESPIG_01463 [Desulfovibrio piger ATCC 29098]
 gi|212673164|gb|EEB33647.1| hypothetical protein DESPIG_01463 [Desulfovibrio piger ATCC 29098]
          Length = 488

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 124 CSLTCSFCYTGTQKLVR-NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           C+  C  C +   K    N+T           +  L   P  E++  ++    GR+    
Sbjct: 217 CNARCVGCISEQDKDSPINVTP----------QCRLTFTPTPEELVEVMSFHAGRETKTP 266

Query: 183 VMM----GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           +        G+PL N D + +S+ +     G+         S +     + R+ +     
Sbjct: 267 IYSFGQGCEGDPLMNPDLLVESVRLFRSQGGVGTVNCNTNASRT---EAVERLAKAGLSS 323

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           + +SL++   ++          Y  + +  +        N   ++   +   G+ DS  +
Sbjct: 324 IRVSLNSARPEV-YERYYRPHGYSFDDVRRSIA--VARQNGLWVSLNLLFFPGVTDSEGE 380

Query: 299 ALNLIKIL 306
              L +++
Sbjct: 381 LEALARLV 388


>gi|145299597|ref|YP_001142438.1| pyruvate formate lyase-activating enzyme 1 [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142852369|gb|ABO90690.1| pyruvate formate-lyase 1 activating enzyme [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 261

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 85/276 (30%), Gaps = 50/276 (18%)

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC-----YTGTQKLVRNLTAEEI 147
            +  IG    +ET    +       V  Q GC + C +C     +       R +T  E+
Sbjct: 14  ESGVIGRIHSVETCGTVDGPGIRFIVFMQ-GCLMRCKYCHNRDTWDTQGG--REVTVPEL 70

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
           +  +   R  +    G     G         I+ +      E         K +    D+
Sbjct: 71  MSDITSYRHFMNASGGGVTASGGEAMLQQNFIAEL-FAACKE---------KGVHTCLDT 120

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
            G              +   + +V +   ++L + +  ++++    L  ++ KY LE   
Sbjct: 121 NGF----------VRHYDEQLDKVLDNTDLVL-LDIKQINDEKHIPLTHVSNKYTLE--- 166

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GIPA-KINLIPFNPWPGC 324
                Y        +   YV++   +D    A  L + +   G    K+ L+P++     
Sbjct: 167 --FARYLAAKGKT-MWIRYVVVPTWSDDDESAEGLGQFIAELGDSVEKVELLPYHELGKH 223

Query: 325 EY------------LCSDQKDIVTFSECIKRSGYSS 348
           ++                ++ +      + +   + 
Sbjct: 224 KWDVLGENYDLTGIKPPSKETMDRVQGILAKYHNNV 259


>gi|117619525|ref|YP_856225.1| pyruvate formate lyase-activating enzyme 1 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560932|gb|ABK37880.1| pyruvate formate-lyase activating enzyme [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 272

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 50/274 (18%)

Query: 95  RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC-----YTGTQKLVRNLTAEEILL 149
             IG    +ET    +       V  Q GC + C +C     +       R +T  E++ 
Sbjct: 27  GVIGRIHSVETCGTVDGPGIRFIVFMQ-GCLMRCKYCHNRDTWDTQGG--REVTVPELMS 83

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
            +   R  +    G     G         I+ +      E         K +    D+ G
Sbjct: 84  DITSYRHFMNASGGGVTASGGEAMLQQNFIAEL-FAACKE---------KGIHTCLDTNG 133

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
                         +   + +V +   ++L + +  +++D    L  ++ KY LE     
Sbjct: 134 F----------VRHYDEQLDKVLDNTDLVL-LDIKQINDDKHIPLTHVSNKYTLE----- 177

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-A--KINLIPFNPWPGCEY 326
              Y        +   YV++   +D    A  L + +  +     K+ L+P++     ++
Sbjct: 178 FARYLAAKGKT-MWIRYVVVPTWSDDDESAEGLGQFIAELGECVEKVELLPYHELGKHKW 236

Query: 327 ------------LCSDQKDIVTFSECIKRSGYSS 348
                           ++ +      + +   + 
Sbjct: 237 DVLGDTYDLNGIKPPSKETMDRVQGILAKYHNNV 270


>gi|240137021|ref|YP_002961490.1| Radical SAM domain protein [Methylobacterium extorquens AM1]
 gi|240006987|gb|ACS38213.1| Radical SAM domain protein [Methylobacterium extorquens AM1]
          Length = 373

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 12/146 (8%)

Query: 225 VPNIARVGEEIGV----MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
            P+  R  E +       L + L AV+ ++R  ++P     PLE   +A      +    
Sbjct: 215 PPDDDRWFERMKASGIDALGMHLEAVTPEVRTRIMPGKASVPLERYYEAFEAAVPVFGRG 274

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTF 337
           +++  Y++  G+ D+P   L + + L G+     ++PF P  G             +   
Sbjct: 275 QVS-TYIL-AGLGDAPEAILEMAERLVGMGVYPFVVPFVPISGTPLESHPAPGPDFMHAI 332

Query: 338 SECIKRSGYSSPIRTPRGLDILAACG 363
            + +      + +R+    DI A CG
Sbjct: 333 LKPLADMLAGADLRST---DIKAGCG 355


>gi|157154815|ref|YP_001462103.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           E24377A]
 gi|301022943|ref|ZP_07186758.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           69-1]
 gi|157076845|gb|ABV16553.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           E24377A]
 gi|294493276|gb|ADE92032.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           IHE3034]
 gi|300397284|gb|EFJ80822.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           69-1]
 gi|315296163|gb|EFU55471.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           16-3]
 gi|324113806|gb|EGC07781.1| pyruvate formate-lyase 1-activating enzyme [Escherichia fergusonii
           B253]
 gi|324116115|gb|EGC10039.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E1167]
          Length = 265

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 48  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 141

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 194

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 254

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 255 ILEQYGHKV 263


>gi|259046654|ref|ZP_05737055.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella adiacens
           ATCC 49175]
 gi|259036819|gb|EEW38074.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella adiacens
           ATCC 49175]
          Length = 254

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 76/244 (31%), Gaps = 55/244 (22%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C FC+   T        +T++E+L Q L  R+  G   G                
Sbjct: 32  GCRMRCEFCHNPDTWNIGGGHPITSQELLDQALQYRAFWGRKGG---------------- 75

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234
              V +  GEPL   D +               +    TL + G       P  ++  E 
Sbjct: 76  ---VTVSGGEPLLQIDFLIDFFKRCKK------AGVHTTLDSCGMPFTYDEPFFSKFEEL 126

Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           +     + + +  + ++    L     K  L+        Y      + +   +V++   
Sbjct: 127 LEYTDLILLDIKHIDDEQHKKLTGWTNKNILQ-----LAEYLS-DKGQPVWIRHVLVPER 180

Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFN-------PWPGCEYL-----CSDQKDIVTFS 338
           +D     + L + +  +    K  ++P++          G  Y         Q+ +    
Sbjct: 181 SDYDEYLIRLSEFVSKLKNVLKFEILPYHKLGVYKWKNLGIPYKLDHIEPPTQERVDNAR 240

Query: 339 ECIK 342
             ++
Sbjct: 241 RILR 244


>gi|242239673|ref|YP_002987854.1| pyruvate formate lyase-activating enzyme 1 [Dickeya dadantii
           Ech703]
 gi|242131730|gb|ACS86032.1| pyruvate formate-lyase activating enzyme [Dickeya dadantii Ech703]
          Length = 246

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 80/217 (36%), Gaps = 44/217 (20%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +       R +T EE++ +V+  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGG--REITVEELMKEVVTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A    G++       L T+GFV    P I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHEQGIN-----TCLDTNGFVRRYDPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++D+   LV ++    LE        Y    N  R+   YV++ G  
Sbjct: 123 VTD-LVMLDLKQLNDDIHQNLVGVSNHRTLE-----FARYLATRNQ-RVWIRYVVVPGWT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328
           D    A  L +  K +    KI L+P++     ++  
Sbjct: 176 DDDASAHLLGEFTKNMSNIEKIELLPYHELGKHKWTA 212


>gi|239628873|ref|ZP_04671904.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519019|gb|EEQ58885.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 255

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 71/214 (33%), Gaps = 37/214 (17%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T   K    +T EEIL Q   AR                        
Sbjct: 29  GCPMRCLYCHNPDTWDPKGGNPMTVEEILAQFEQARPFYKKG------------------ 70

Query: 180 SNIVMMGMGEPLCNFDNV---KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
             I + G GEPL     V    ++    +    L  S      S+ G +    R+     
Sbjct: 71  -GITVSG-GEPLMQIRFVTELFEAARARNIHTCLDTSGITFNPSSEGIMAMFDRLMAVTD 128

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            ++ + +  +  +    L         +  I A   Y        +   +V + GI D+ 
Sbjct: 129 -LVMLDIKHIDPEEHIKLCAQ-----PQDNILAFARYLEQK-KIPVWIRHVAVPGITDNE 181

Query: 297 RDALNLIKI---LKGIPAKINLIPFNPWPGCEYL 327
                L +    LK I A ++++P++     +Y 
Sbjct: 182 TYLYRLGRYLGTLKNIKA-LDVLPYHDMGKAKYH 214


>gi|191167604|ref|ZP_03029415.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B7A]
 gi|190902365|gb|EDV62103.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B7A]
          Length = 265

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 48  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 141

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 194

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 254

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 255 ILEQYGHKV 263


>gi|296103095|ref|YP_003613241.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057554|gb|ADF62292.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 246

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 86/249 (34%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A    G+        L T+GFV    P I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHKEGI-----HTCLDTNGFVRRYDPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++        ++  ++        +    YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYISAK--GIKTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 236 ILEQYGHKV 244


>gi|218546598|gb|ACK98945.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
           achromogenes]
 gi|218546620|gb|ACK98959.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 43

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 350 IRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
           +R  RG DI AACGQL      R  +  +  MQ  G
Sbjct: 2   VRKTRGDDIDAACGQLVGEVIDRTKRTMKNRMQQDG 37


>gi|153854548|ref|ZP_01995818.1| hypothetical protein DORLON_01813 [Dorea longicatena DSM 13814]
 gi|149752857|gb|EDM62788.1| hypothetical protein DORLON_01813 [Dorea longicatena DSM 13814]
          Length = 309

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 71/221 (32%), Gaps = 37/221 (16%)

Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           EI+ Q    ++L+ +              V      ++ M         D + +      
Sbjct: 105 EIVGQKYPVKALVKELMKDLMFYEQSGGGVTLSGGEVMAMST-------DYILEIAKALK 157

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--MLAISLHAVSNDLRNILVPINRKYPL 263
                      +T+ T G+VP   +    +         +  +  +L    + ++ K  L
Sbjct: 158 KEE------VSLTIDTCGYVPY-EKFEAILPYVNTFLYDVKVMDPELHKQYIGVDNKLIL 210

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNP 320
           + L+             RI      +K +N +  +    I+ LK        +NL+P++ 
Sbjct: 211 DNLVKLSDA------GARIYIRIPTVKEVNGNEENMNETIRFLKEHDIHPAQVNLLPYHN 264

Query: 321 WPGCEYLC------------SDQKDIVTFSECIKRSGYSSP 349
               +Y                ++++  F +  + +G+S+ 
Sbjct: 265 TGSSKYPKLDMEYKGNDLSAPTKEEMEGFVKLFQDAGFSNT 305


>gi|300856539|ref|YP_003781523.1| putative Fe-S oxidoreductase [Clostridium ljungdahlii DSM 13528]
 gi|300436654|gb|ADK16421.1| putative Fe-S oxidoreductase [Clostridium ljungdahlii DSM 13528]
          Length = 455

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 84/250 (33%), Gaps = 36/250 (14%)

Query: 61  RHLLNQHF-SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
           R  + + +  I      +   S D             I    E E  +I       LC++
Sbjct: 55  REEVVEAYGEIQQLIEKEMLYSKD---------LYEGIAKKHESEPSFIK-----ALCLN 100

Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
               C+L C +C+             E   +    R L+    G + I+ ++  S  RK 
Sbjct: 101 IAHDCNLRCKYCFADE---------GEYKGR----RKLMSAKIGKKAIDFVIEKSGPRKN 147

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV----GEEI 235
             + + G GEPL  FD VK+ +  A     L     R T++T+  + N   +        
Sbjct: 148 IEVDLFG-GEPLMAFDAVKEIVEYAKKQEKLHNKNIRFTMTTNATLLNDEIMDYLDKNMG 206

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN-D 294
            ++L+I      ND   + V     +  + ++   +    + +  +  +        N D
Sbjct: 207 NIVLSIDGRKEVNDKVRVRVDGTGSF--DSILPKIKKMVKIRDKSKQYYARGTFTRNNID 264

Query: 295 SPRDALNLIK 304
              D   L  
Sbjct: 265 FFEDIKYLAD 274


>gi|117623083|ref|YP_851996.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli APEC
           O1]
 gi|115512207|gb|ABJ00282.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli APEC
           O1]
          Length = 265

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 48  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 141

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 194

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 254

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 255 ILEQYGHKV 263


>gi|210060915|pdb|3C8F|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme With
           Partially Disordered Adomet
 gi|210060916|pdb|3CB8|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme In Complex
           With Adomet And A Peptide Substrate
          Length = 245

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 28  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 85

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 86  FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 121

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 122 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 174

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 175 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 234

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 235 ILEQYGHKV 243


>gi|332093278|gb|EGI98338.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii
           5216-82]
          Length = 246

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 87  FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLHGVKPPKKETMERVKG 235

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 236 ILEQYGHKV 244


>gi|303327677|ref|ZP_07358117.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862038|gb|EFL84972.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3]
          Length = 466

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 24/211 (11%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C  C +   K     +   +  Q  LA          E +E M +       + I 
Sbjct: 192 CNARCVGCISAQDK----DSPVAVTPQCRLA----FTPEAAEIVEVMRLHQSRETATPIY 243

Query: 184 MMGMG---EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEEIGVML 239
             G G   +PL N D + +S+ +     G       +  +T+   P  +AR+ E     +
Sbjct: 244 SFGQGCEGDPLTNADLLVESVRLFRTGGGRG----TVNCNTNASNPEAVARLAEAGLTSM 299

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            +S ++    L          Y    +  + R          ++   +   G+ D+  + 
Sbjct: 300 RVSCNSAREALYRRYYRPAD-YSFADVRASIRE--ARQRGIFVSLNLLFFPGVTDTEEEL 356

Query: 300 LNLIKILKGIPAKINLIPF---NPWPGCEYL 327
             L +++      +++I +   N  P   + 
Sbjct: 357 EALARLVGENG--VSMIQWRNLNIDPEWYFR 385


>gi|126178604|ref|YP_001046569.1| radical SAM domain-containing protein [Methanoculleus marisnigri
           JR1]
 gi|125861398|gb|ABN56587.1| Radical SAM domain protein [Methanoculleus marisnigri JR1]
          Length = 303

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 25/174 (14%)

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239
           I + G GEPL N +   ++L +  +     F    + +ST+G      I  + +     +
Sbjct: 98  IGIAGPGEPLANPE-TFEALRLVHEE----FPHLIMCISTNGLMLPEYIEELAKYDVGNI 152

Query: 240 AISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYP------GLSNARRITFEYVML 289
            I+L+AV   +   +        ++Y      +             ++    +    V +
Sbjct: 153 TITLNAVDPAIGEKIYAWVDYKGKRYHGREAAEILLSQQLKGIEMAVAKKIFVKINTVYI 212

Query: 290 KGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY---LCSDQKDIVTFSE 339
            GIND       + K +  + A   N+IP    P  ++        K+     +
Sbjct: 213 PGIND--EHIPEIAKKVGEMGAFTFNVIPV--IPQYKFAHITPPTPKEKREMQD 262


>gi|15800763|ref|NP_286777.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 EDL933]
 gi|15830239|ref|NP_309012.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128869|ref|NP_415422.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
           K-12 substr. MG1655]
 gi|30062437|ref|NP_836608.1| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2a
           str. 2457T]
 gi|56479766|ref|NP_706820.2| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2a
           str. 301]
 gi|74311458|ref|YP_309877.1| pyruvate formate lyase-activating enzyme 1 [Shigella sonnei Ss046]
 gi|82544640|ref|YP_408587.1| pyruvate formate lyase-activating enzyme 1 [Shigella boydii Sb227]
 gi|82777578|ref|YP_403927.1| pyruvate formate lyase-activating enzyme 1 [Shigella dysenteriae
           Sd197]
 gi|89107752|ref|AP_001532.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
           K-12 substr. W3110]
 gi|110641099|ref|YP_668829.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 536]
 gi|110804910|ref|YP_688430.1| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 5
           str. 8401]
 gi|157160424|ref|YP_001457742.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli HS]
 gi|161486262|ref|NP_752967.2| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           CFT073]
 gi|162138459|ref|YP_539989.2| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UTI89]
 gi|168752115|ref|ZP_02777137.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756994|ref|ZP_02782001.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762963|ref|ZP_02787970.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4501]
 gi|168769896|ref|ZP_02794903.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776246|ref|ZP_02801253.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4196]
 gi|168783813|ref|ZP_02808820.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787331|ref|ZP_02812338.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC869]
 gi|168801415|ref|ZP_02826422.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC508]
 gi|170020696|ref|YP_001725650.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli ATCC
           8739]
 gi|170080560|ref|YP_001729880.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188492165|ref|ZP_02999435.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 53638]
 gi|191172048|ref|ZP_03033592.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli F11]
 gi|193064616|ref|ZP_03045695.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E22]
 gi|193070729|ref|ZP_03051664.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           E110019]
 gi|194428375|ref|ZP_03060916.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B171]
 gi|194434403|ref|ZP_03066666.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
           1012]
 gi|194438701|ref|ZP_03070788.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 101-1]
 gi|195939563|ref|ZP_03084945.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208805965|ref|ZP_03248302.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4206]
 gi|208815370|ref|ZP_03256549.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822382|ref|ZP_03262701.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4042]
 gi|209400841|ref|YP_002269574.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4115]
 gi|209918152|ref|YP_002292236.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli SE11]
 gi|215486027|ref|YP_002328458.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217324861|ref|ZP_03440945.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. TW14588]
 gi|218548419|ref|YP_002382210.1| pyruvate formate lyase-activating enzyme 1 [Escherichia fergusonii
           ATCC 35469]
 gi|218553488|ref|YP_002386401.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli IAI1]
 gi|218557807|ref|YP_002390720.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli S88]
 gi|218688742|ref|YP_002396954.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli ED1a]
 gi|218694375|ref|YP_002402042.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 55989]
 gi|218700580|ref|YP_002408209.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli IAI39]
 gi|218704329|ref|YP_002411848.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           UMN026]
 gi|238900160|ref|YP_002925956.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           BW2952]
 gi|253774069|ref|YP_003036900.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161016|ref|YP_003044124.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli B str.
           REL606]
 gi|254792101|ref|YP_003076938.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020970|ref|ZP_05434835.1| pyruvate formate lyase-activating enzyme 1 [Shigella sp. D9]
 gi|256023397|ref|ZP_05437262.1| pyruvate formate lyase-activating enzyme 1 [Escherichia sp.
           4_1_40B]
 gi|260843152|ref|YP_003220930.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O103:H2 str. 12009]
 gi|260854193|ref|YP_003228084.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O26:H11 str. 11368]
 gi|260867074|ref|YP_003233476.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O111:H- str. 11128]
 gi|261227405|ref|ZP_05941686.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256172|ref|ZP_05948705.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281903|ref|YP_003498721.1| Pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
           str. CB9615]
 gi|293409279|ref|ZP_06652855.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B354]
 gi|297519591|ref|ZP_06937977.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli OP50]
 gi|306812645|ref|ZP_07446838.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli NC101]
 gi|307137531|ref|ZP_07496887.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli H736]
 gi|307311711|ref|ZP_07591351.1| pyruvate formate-lyase activating enzyme [Escherichia coli W]
 gi|309784023|ref|ZP_07678667.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
           1617]
 gi|312969032|ref|ZP_07783239.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           2362-75]
 gi|312971030|ref|ZP_07785209.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           1827-70]
 gi|331656972|ref|ZP_08357934.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA206]
 gi|331662315|ref|ZP_08363238.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA143]
 gi|331667278|ref|ZP_08368143.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA271]
 gi|331682409|ref|ZP_08383028.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H299]
 gi|71159621|sp|P0A9N6|PFLA_ECO57 RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
           Full=Formate-C-acetyltransferase-activating enzyme 1;
           AltName: Full=PFL-activating enzyme 1
 gi|71159622|sp|P0A9N5|PFLA_ECOL6 RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
           Full=Formate-C-acetyltransferase-activating enzyme 1;
           AltName: Full=PFL-activating enzyme 1
 gi|71159623|sp|P0A9N4|PFLA_ECOLI RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
           Full=Formate-C-acetyltransferase-activating enzyme 1;
           AltName: Full=PFL-activating enzyme 1
 gi|71159624|sp|P0A9N7|PFLA_SHIFL RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
           Full=Formate-C-acetyltransferase-activating enzyme 1;
           AltName: Full=PFL-activating enzyme 1
 gi|12514065|gb|AAG55387.1|AE005279_7 pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O157:H7 str. EDL933]
 gi|42371|emb|CAA30829.1| unnamed protein product [Escherichia coli K-12]
 gi|1787130|gb|AAC73988.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
           K-12 substr. MG1655]
 gi|4062478|dbj|BAA35637.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
           K12 substr. W3110]
 gi|13360444|dbj|BAB34408.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O157:H7 str. Sakai]
 gi|30040683|gb|AAP16414.1| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 2a
           str. 2457T]
 gi|56383317|gb|AAN42527.2| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 2a
           str. 301]
 gi|73854935|gb|AAZ87642.1| pyruvate formate lyase activating enzyme 1 [Shigella sonnei Ss046]
 gi|81241726|gb|ABB62436.1| pyruvate formate lyase activating enzyme 1 [Shigella dysenteriae
           Sd197]
 gi|81246051|gb|ABB66759.1| pyruvate formate lyase activating enzyme 1 [Shigella boydii Sb227]
 gi|110342691|gb|ABG68928.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli 536]
 gi|110614458|gb|ABF03125.1| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 5
           str. 8401]
 gi|157066104|gb|ABV05359.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli HS]
 gi|169755624|gb|ACA78323.1| pyruvate formate-lyase activating enzyme [Escherichia coli ATCC
           8739]
 gi|169888395|gb|ACB02102.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str.
           K-12 substr. DH10B]
 gi|187768338|gb|EDU32182.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4196]
 gi|188013962|gb|EDU52084.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4113]
 gi|188487364|gb|EDU62467.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 53638]
 gi|188998898|gb|EDU67884.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355900|gb|EDU74319.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361165|gb|EDU79584.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366831|gb|EDU85247.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372637|gb|EDU91053.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC869]
 gi|189376430|gb|EDU94846.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC508]
 gi|190907575|gb|EDV67170.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli F11]
 gi|192927673|gb|EDV82288.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E22]
 gi|192955922|gb|EDV86390.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           E110019]
 gi|194413590|gb|EDX29871.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B171]
 gi|194417387|gb|EDX33493.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
           1012]
 gi|194422333|gb|EDX38333.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 101-1]
 gi|208725766|gb|EDZ75367.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4206]
 gi|208732018|gb|EDZ80706.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4045]
 gi|208737867|gb|EDZ85550.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4042]
 gi|209162241|gb|ACI39674.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. EC4115]
 gi|209748614|gb|ACI72614.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli]
 gi|209748616|gb|ACI72615.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli]
 gi|209748618|gb|ACI72616.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli]
 gi|209911411|dbj|BAG76485.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli SE11]
 gi|215264099|emb|CAS08443.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217321082|gb|EEC29506.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           O157:H7 str. TW14588]
 gi|218351107|emb|CAU96811.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli 55989]
 gi|218355960|emb|CAQ88576.1| pyruvate formate lyase activating enzyme 1 [Escherichia fergusonii
           ATCC 35469]
 gi|218360256|emb|CAQ97806.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli IAI1]
 gi|218364576|emb|CAR02262.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli S88]
 gi|218370566|emb|CAR18373.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli IAI39]
 gi|218426306|emb|CAR07131.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli ED1a]
 gi|218431426|emb|CAR12304.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           UMN026]
 gi|222032633|emb|CAP75372.1| Pyruvate formate-lyase 1-activating enzyme [Escherichia coli LF82]
 gi|238863358|gb|ACR65356.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           BW2952]
 gi|242376717|emb|CAQ31430.1| pyruvate formate-lyase activating enzyme [Escherichia coli
           BL21(DE3)]
 gi|253325113|gb|ACT29715.1| pyruvate formate-lyase activating enzyme [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972917|gb|ACT38588.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli B str.
           REL606]
 gi|253977131|gb|ACT42801.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           BL21(DE3)]
 gi|254591501|gb|ACT70862.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O157:H7 str. TW14359]
 gi|257752842|dbj|BAI24344.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O26:H11 str. 11368]
 gi|257758299|dbj|BAI29796.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O103:H2 str. 12009]
 gi|257763430|dbj|BAI34925.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli
           O111:H- str. 11128]
 gi|260449952|gb|ACX40374.1| pyruvate formate-lyase activating enzyme [Escherichia coli DH1]
 gi|281178033|dbj|BAI54363.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli SE15]
 gi|281600262|gb|ADA73246.1| Pyruvate formate lyase-activating enzyme 1 [Shigella flexneri
           2002017]
 gi|284920753|emb|CBG33816.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli 042]
 gi|290761776|gb|ADD55737.1| Pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
           str. CB9615]
 gi|291469747|gb|EFF12231.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B354]
 gi|305853408|gb|EFM53847.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli NC101]
 gi|306908266|gb|EFN38765.1| pyruvate formate-lyase activating enzyme [Escherichia coli W]
 gi|307552741|gb|ADN45516.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli ABU
           83972]
 gi|307627671|gb|ADN71975.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UM146]
 gi|308928166|gb|EFP73629.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
           1617]
 gi|309701178|emb|CBJ00478.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli ETEC
           H10407]
 gi|310336791|gb|EFQ01958.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           1827-70]
 gi|312286434|gb|EFR14347.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           2362-75]
 gi|312945422|gb|ADR26249.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313648452|gb|EFS12895.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri 2a
           str. 2457T]
 gi|315060187|gb|ADT74514.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli W]
 gi|315135550|dbj|BAJ42709.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli DH1]
 gi|315619096|gb|EFU99676.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 3431]
 gi|320173243|gb|EFW48452.1| Pyruvate formate-lyase activating enzyme [Shigella dysenteriae CDC
           74-1112]
 gi|320182031|gb|EFW56936.1| Pyruvate formate-lyase activating enzyme [Shigella boydii ATCC
           9905]
 gi|320184266|gb|EFW59079.1| Pyruvate formate-lyase activating enzyme [Shigella flexneri CDC
           796-83]
 gi|320192612|gb|EFW67253.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
           str. EC1212]
 gi|320196604|gb|EFW71227.1| Pyruvate formate-lyase activating enzyme [Escherichia coli
           WV_060327]
 gi|320202298|gb|EFW76869.1| Pyruvate formate-lyase activating enzyme [Escherichia coli EC4100B]
 gi|320637770|gb|EFX07562.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 str. G5101]
 gi|320653668|gb|EFX21742.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320659813|gb|EFX27369.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320664282|gb|EFX31433.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323157211|gb|EFZ43334.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           EPECa14]
 gi|323159528|gb|EFZ45508.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           E128010]
 gi|323165367|gb|EFZ51154.1| pyruvate formate-lyase 1-activating enzyme [Shigella sonnei 53G]
 gi|323175475|gb|EFZ61070.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1180]
 gi|323185392|gb|EFZ70756.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1357]
 gi|323190722|gb|EFZ75991.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           RN587/1]
 gi|323379256|gb|ADX51524.1| pyruvate formate-lyase activating enzyme [Escherichia coli KO11]
 gi|323938008|gb|EGB34270.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E1520]
 gi|323942818|gb|EGB38983.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E482]
 gi|323947309|gb|EGB43317.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H120]
 gi|323953391|gb|EGB49257.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H252]
 gi|323958207|gb|EGB53916.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H263]
 gi|323962894|gb|EGB58468.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H489]
 gi|323967149|gb|EGB62573.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M863]
 gi|323973225|gb|EGB68417.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA007]
 gi|323976711|gb|EGB71799.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           TW10509]
 gi|325496842|gb|EGC94701.1| pyruvate formate lyase-activating enzyme 1 [Escherichia fergusonii
           ECD227]
 gi|326338203|gb|EGD62032.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
           str. 1125]
 gi|326346180|gb|EGD69918.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7
           str. 1044]
 gi|327253691|gb|EGE65320.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           STEC_7v]
 gi|330910682|gb|EGH39192.1| pyruvate formate-lyase activating enzyme [Escherichia coli AA86]
 gi|331055220|gb|EGI27229.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA206]
 gi|331060737|gb|EGI32701.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA143]
 gi|331065634|gb|EGI37527.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA271]
 gi|331080040|gb|EGI51219.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H299]
 gi|332093544|gb|EGI98602.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii
           3594-74]
 gi|332095904|gb|EGJ00911.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae
           155-74]
 gi|332342345|gb|AEE55679.1| pyruvate formate-lyase 1-activating enzyme PflA [Escherichia coli
           UMNK88]
 gi|332760073|gb|EGJ90371.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri
           2747-71]
 gi|332762668|gb|EGJ92931.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri
           K-671]
 gi|333006341|gb|EGK25849.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri VA-6]
 gi|333006966|gb|EGK26461.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri
           K-218]
 gi|333019965|gb|EGK39236.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri
           K-304]
          Length = 246

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 87  FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 236 ILEQYGHKV 244


>gi|330446644|ref|ZP_08310296.1| pyruvate formate-lyase 1-activating enzyme [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490835|dbj|GAA04793.1| pyruvate formate-lyase 1-activating enzyme [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 246

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 82/241 (34%), Gaps = 46/241 (19%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        +   E  + +++        F                     
Sbjct: 29  GCLMRCQYCH-NRDTWDTHGGREATVDELMHEAKSYRHFMNSSGGG-------------- 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGEEIGVM 238
           V    GE +   + V+     A+ + G+        L T+G++      I  V +    +
Sbjct: 74  VTASGGEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVIDEVLDATD-L 126

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           + + L  + + +   LV      P + ++D  R+       ++    YV++ G  D  R 
Sbjct: 127 VMLDLKQMDDSIHQNLV----GVPNKRVLDFARYLHQR--GQKTWIRYVVVPGYTDDERS 180

Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRS 344
           A  L + +K +    K+ L+P++     ++                ++ + T  E +   
Sbjct: 181 AHLLGEFIKDMDNIEKVELLPYHQLGEHKWEAMGFDYPLKGVNPPKKETMETIKEILSSY 240

Query: 345 G 345
           G
Sbjct: 241 G 241


>gi|187734201|ref|YP_001880903.1| pyruvate formate lyase-activating enzyme 1 [Shigella boydii CDC
           3083-94]
 gi|227884133|ref|ZP_04001938.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 83972]
 gi|237707110|ref|ZP_04537591.1| pyruvate formate-lyase 1 activating enzyme [Escherichia sp.
           3_2_53FAA]
 gi|293404208|ref|ZP_06648202.1| pflA [Escherichia coli FVEC1412]
 gi|293414182|ref|ZP_06656831.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B185]
 gi|293433199|ref|ZP_06661627.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B088]
 gi|298379988|ref|ZP_06989593.1| pflA [Escherichia coli FVEC1302]
 gi|300816995|ref|ZP_07097214.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           107-1]
 gi|300823641|ref|ZP_07103768.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           119-7]
 gi|300901670|ref|ZP_07119730.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           198-1]
 gi|300902940|ref|ZP_07120885.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           84-1]
 gi|300921063|ref|ZP_07137448.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           115-1]
 gi|300929596|ref|ZP_07145058.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           187-1]
 gi|300937598|ref|ZP_07152408.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           21-1]
 gi|300949737|ref|ZP_07163715.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           116-1]
 gi|300955451|ref|ZP_07167825.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           175-1]
 gi|300978474|ref|ZP_07174289.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           45-1]
 gi|300983149|ref|ZP_07176463.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           200-1]
 gi|301047840|ref|ZP_07194891.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           185-1]
 gi|301302491|ref|ZP_07208622.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           124-1]
 gi|301325772|ref|ZP_07219222.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           78-1]
 gi|301643421|ref|ZP_07243469.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           146-1]
 gi|309795288|ref|ZP_07689706.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           145-7]
 gi|331641428|ref|ZP_08342563.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H736]
 gi|331672441|ref|ZP_08373231.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA280]
 gi|331676690|ref|ZP_08377386.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H591]
 gi|332282193|ref|ZP_08394606.1| pyruvate formate-lyase 1 activating enzyme [Shigella sp. D9]
 gi|26107327|gb|AAN79510.1|AE016758_114 Pyruvate formate-lyase 1 activating enzyme [Escherichia coli
           CFT073]
 gi|91071577|gb|ABE06458.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli UTI89]
 gi|187431193|gb|ACD10467.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii CDC
           3083-94]
 gi|226898320|gb|EEH84579.1| pyruvate formate-lyase 1 activating enzyme [Escherichia sp.
           3_2_53FAA]
 gi|227838885|gb|EEJ49351.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 83972]
 gi|291324018|gb|EFE63440.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B088]
 gi|291428794|gb|EFF01819.1| pflA [Escherichia coli FVEC1412]
 gi|291434240|gb|EFF07213.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B185]
 gi|298279686|gb|EFI21194.1| pflA [Escherichia coli FVEC1302]
 gi|300300299|gb|EFJ56684.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           185-1]
 gi|300306983|gb|EFJ61503.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           200-1]
 gi|300317674|gb|EFJ67458.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           175-1]
 gi|300354963|gb|EFJ70833.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           198-1]
 gi|300405082|gb|EFJ88620.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           84-1]
 gi|300409651|gb|EFJ93189.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           45-1]
 gi|300411986|gb|EFJ95296.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           115-1]
 gi|300450885|gb|EFK14505.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           116-1]
 gi|300457377|gb|EFK20870.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           21-1]
 gi|300462433|gb|EFK25926.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           187-1]
 gi|300523841|gb|EFK44910.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           119-7]
 gi|300530347|gb|EFK51409.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           107-1]
 gi|300842330|gb|EFK70090.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           124-1]
 gi|300847444|gb|EFK75204.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           78-1]
 gi|301078135|gb|EFK92941.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           146-1]
 gi|308120938|gb|EFO58200.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           145-7]
 gi|315257942|gb|EFU37910.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           85-1]
 gi|315287536|gb|EFU46947.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           110-3]
 gi|315291232|gb|EFU50592.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           153-1]
 gi|324009847|gb|EGB79066.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           57-2]
 gi|324012960|gb|EGB82179.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           60-1]
 gi|324019090|gb|EGB88309.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS
           117-3]
 gi|331038226|gb|EGI10446.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H736]
 gi|331070347|gb|EGI41712.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA280]
 gi|331075379|gb|EGI46677.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H591]
 gi|332104545|gb|EGJ07891.1| pyruvate formate-lyase 1 activating enzyme [Shigella sp. D9]
          Length = 255

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 38  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 95

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 96  FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 131

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 132 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 184

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 185 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 244

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 245 ILEQYGHKV 253


>gi|291166144|gb|EFE28190.1| radical SAM domain protein [Filifactor alocis ATCC 35896]
          Length = 462

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 24/197 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-GCEDIEGMVIP 173
            +C+     C+L C +C+    K                 +  L  F  G + ++ ++  
Sbjct: 98  AMCLHVAHTCNLACDYCFAKQGK--------------YHGKDGLMSFEVGKKALDFLIEH 143

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV 231
           S  R    +   G GEPL N++ VK+ ++           K R TL+T+G +    I   
Sbjct: 144 SGTRTNLEVDFFG-GEPLMNWEVVKQLVAYGRSQEKEKKKKFRFTLTTNGVLLDDEIIEF 202

Query: 232 G--EEIGVMLAISLHAVS-NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
              E   V+L++       +  R  L     K   ++++   + +    N          
Sbjct: 203 ANKEMYNVVLSLDGRKEIHDRFRKNL---AGKGSYDLIVPKFQKFTKSRNDAGYYVRGTY 259

Query: 289 LKGINDSPRDALNLIKI 305
                D   D  ++  +
Sbjct: 260 THHNVDFTEDIFHMSDL 276


>gi|170681252|ref|YP_001744269.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli
           SMS-3-5]
 gi|170518970|gb|ACB17148.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli
           SMS-3-5]
          Length = 246

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 87  FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    +  ++   YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKD-VKVWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKS 235

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 236 ILEQYGHKV 244


>gi|75759721|ref|ZP_00739802.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228904932|ref|ZP_04068985.1| Radical SAM domain protein [Bacillus thuringiensis IBL 4222]
 gi|74492798|gb|EAO55933.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228854707|gb|EEM99312.1| Radical SAM domain protein [Bacillus thuringiensis IBL 4222]
          Length = 468

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 88/248 (35%), Gaps = 30/248 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L+C +C+    K   N             R+++    G   I+ ++  S
Sbjct: 100 ALCLNVAHTCNLSCEYCFASQGKYNGN-------------RAIMSFEVGKRAIDFLLENS 146

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
              +  ++   G GEPL  +  VK+ ++ A +         R T +T+G +    I    
Sbjct: 147 GNHRNLDVDFFG-GEPLMAWKTVKQIVAYARNKEKEYKKTFRFTFTTNGMLLNDEITEFL 205

Query: 233 EEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
            +    + +SL     V + LR     +N K     ++   + +      +         
Sbjct: 206 NQEMHNVVLSLDGRKKVHDYLRK---TVNGKGSYNHIVPKFQEFVEKRGDKEYYVRGTYT 262

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECIKRSGYS 347
               D   D  ++  +  G   KI++ P        Y   ++   +I    E + +   +
Sbjct: 263 HNNVDFTNDIYHIADL--GFN-KISMEPVICNSQEPYALCEEDLLEIYNQYEILSKEMLN 319

Query: 348 SPIRTPRG 355
              R  +G
Sbjct: 320 ---REEKG 324


>gi|315634844|ref|ZP_07890126.1| pyruvate formate-lyase activating enzyme [Aggregatibacter segnis
           ATCC 33393]
 gi|315476396|gb|EFU67146.1| pyruvate formate-lyase activating enzyme [Aggregatibacter segnis
           ATCC 33393]
          Length = 246

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 81/245 (33%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              +T EE++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDLHGGKE--VTVEELMKEVVSYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +S   D+ G              +   I  + +   +
Sbjct: 87  FVRDWFQACKKEG----------ISTCLDTNGF----------VRHYDHVIDELIDATDL 126

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +L + L  +++ +   L+ ++ K  LE        Y    N   +   YV++ G  DS  
Sbjct: 127 VL-LDLKELNDQVHQNLIGVSNKRTLE-----FAKYLQKRNQ-PVWIRYVVVPGYTDSDH 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343
           D   L + ++G+    K+ L+P++     ++                ++ +      ++ 
Sbjct: 180 DVHLLGQFIEGMTNIEKVELLPYHRLGAHKWAAMGEKYELEEVNPPTKESLEHIKNILEG 239

Query: 344 SGYSS 348
            G+  
Sbjct: 240 YGHIV 244


>gi|322832184|ref|YP_004212211.1| pyruvate formate-lyase activating enzyme [Rahnella sp. Y9602]
 gi|321167385|gb|ADW73084.1| pyruvate formate-lyase activating enzyme [Rahnella sp. Y9602]
          Length = 265

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 85/249 (34%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +        N+  ++++ +V+  R  +    G              
Sbjct: 48  GCLMRCMYCHNRDTWDTHGGKEINV--DDLMKEVVTYRHFMNASGGG------------- 92

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A    G++       L T+GFV    P I  + +
Sbjct: 93  -----VTASGGEAILQAEFVRDWFR-ACQKEGIN-----TCLDTNGFVRRYDPVIDELLD 141

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++D+   LV ++    L+        Y    N  R    YV++ G +
Sbjct: 142 VSD-LVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWS 194

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D    A  L +  K +    KI L+P++     ++                ++ +     
Sbjct: 195 DDDDSAHKLGEFTKDMTNIEKIELLPYHELGKHKWTAMGEKYGLDGVNPPTKEIMERVKN 254

Query: 340 CIKRSGYSS 348
            +   G+  
Sbjct: 255 ILASYGHKV 263


>gi|323341819|ref|ZP_08082052.1| putative radical SAM [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464244|gb|EFY09437.1| putative radical SAM [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 462

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 82/248 (33%), Gaps = 63/248 (25%)

Query: 123 GCSLTCSFC-YTGTQKLVR------NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           GC+L CS+C Y+      R      N+T E                   E I      S 
Sbjct: 87  GCNLRCSYCPYSQENTFTRSHNNSLNMTVE----------------TARESILFYAQHSR 130

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
                NI   G GEP+ NF  +K+++   +   G + S   +T + +    NI    +  
Sbjct: 131 DCNNKNIAFYG-GEPIFNFKLIKEAVEFGNKMFGENVS-YHMTTNATLLTRNILEFLDTN 188

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYP---LEMLIDACRHYPGLSNARRITFEYVMLKGI 292
              L IS+    N     +   NRK+    L +          +       + Y+ +  +
Sbjct: 189 DFRLMISIDGPEN-----INDRNRKFSNGHLGVFKRVIDKIELIKKDYPCLYRYLSINMV 243

Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIR 351
                                 L P N +    +++ S+   +  F +     G ++ I 
Sbjct: 244 ----------------------LTPDNTFTEYQDFIQSN---MYIFKDI----GVNASIV 274

Query: 352 TPRGLDIL 359
           +  GLDI 
Sbjct: 275 SEIGLDIS 282


>gi|290473883|ref|YP_003466757.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus bovienii
           SS-2004]
 gi|289173190|emb|CBJ79963.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus bovienii
           SS-2004]
          Length = 246

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 80/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +    R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWNTHGGTT--VTVEELIKEATTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
                V    GE +   + V+                    L T+GFV      I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFRACHAEN------IHTCLDTNGFVRRYDLIIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
           +   ++ + L  + +++   L+ ++    LE       HY    N  +    YV++ G +
Sbjct: 123 DTD-LVMLDLKQLDDEIHQKLIGVSNHRTLE-----FAHYLAKLNQ-KTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D  +    L +  K +    KI L+P++     ++                ++ +    E
Sbjct: 176 DDDKSIHMLGEFTKDMKNIEKIELLPYHELGKHKWIAMGEEYKLEGVKPPSKETMERVKE 235

Query: 340 CIKRSGYSS 348
            +   G+  
Sbjct: 236 ILVSYGHHV 244


>gi|227872098|ref|ZP_03990471.1| radical SAM domain protein [Oribacterium sinus F0268]
 gi|227842047|gb|EEJ52304.1| radical SAM domain protein [Oribacterium sinus F0268]
          Length = 459

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 64/200 (32%), Gaps = 28/200 (14%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L CS+C+             E          L+    G   ++ ++  S
Sbjct: 99  ALCLLVAHSCNLACSYCFASQG-----HYHGE--------SGLMSFETGKRALDFLIENS 145

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLST--SGFVPNIA 229
             R+   +   G GEPL NF   K  +          G +F   R TL+T   G    I 
Sbjct: 146 GTRRNLEVDFFG-GEPLVNFQVCKDLVAYARSIEKEKGKNF---RFTLTTNGVGLTEEIM 201

Query: 230 RVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
               E    + +SL     V++  R   V    K   + ++   + +      +      
Sbjct: 202 DWANEECHNVVLSLDGRKEVNDRFR---VDRKGKGSYDQIVPKFQRFVEKRGDKEYYMRG 258

Query: 287 VMLKGINDSPRDALNLIKIL 306
                  D   D  ++   L
Sbjct: 259 TFSHFNTDFTEDIAHMADEL 278


>gi|315630423|ref|YP_004090310.1| Radical SAM domain protein [Ruminococcus albus 7]
 gi|315450863|gb|ADU24424.1| Radical SAM domain protein [Ruminococcus albus 7]
          Length = 470

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 80/249 (32%), Gaps = 27/249 (10%)

Query: 99  GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL-QVLLARSL 157
              +IE   +       +   +   C+  C +C         +      L  + +   + 
Sbjct: 54  DSHDIEEYILKYGLGQMVLEVTNR-CNFRCEYCI-----FSEHYQGHSKLENENMTLETA 107

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
           +       D+          +   I   G GEPL NFD VKK +  A +       K R+
Sbjct: 108 IRAIDMYMDLIEKGKIYNPERTPIIGFYG-GEPLLNFDLVKKCVEYAKERY-----KGRV 161

Query: 218 TLSTSG----FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH- 272
             S +          ++   E   M   SL          +   NRK  L          
Sbjct: 162 LFSITSNAYLLNDEASKFMAENDFMPIFSLDGP-----QKIHDSNRK--LAGGKGTFERV 214

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYLCSD 330
           Y  + N  R+T    M+  + D   D   L++          ++L P NP+    Y   D
Sbjct: 215 YQNIRNYARVTNSIPMINSVYDYNTDMEELMEFWSEQNEMVLLSLSPVNPYDTDYYNSFD 274

Query: 331 QKDIVTFSE 339
           +K + TF E
Sbjct: 275 EKTVKTFFE 283


>gi|261253301|ref|ZP_05945874.1| pyruvate formate-lyase activating enzyme [Vibrio orientalis CIP
           102891]
 gi|260936692|gb|EEX92681.1| pyruvate formate-lyase activating enzyme [Vibrio orientalis CIP
           102891]
          Length = 215

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 82/246 (33%), Gaps = 56/246 (22%)

Query: 126 LTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           + C +C     +         +T EEI+ +    R  +    G                 
Sbjct: 1   MRCKYCHNRDTWDTHDGKE--VTVEEIISEAKSYRHFMNASGGG---------------- 42

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGEEIG 236
             V    GE +   + V+     A+ + G+        L T+G++      I  V E   
Sbjct: 43  --VTCSGGEAMLQPEFVRDFFR-AAHNEGI-----HTCLDTNGYIRKHTEVIDEVLEATD 94

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           +++    H       + +   N++      +D  R+   +   ++    YV++ G  D P
Sbjct: 95  LVMLDLKHMKDEVHHDFIGVSNKR-----TLDFARYLHKI--GQKTWIRYVVVPGYTDDP 147

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
             A  L + +K +    KI L+P++     ++                ++ + +    ++
Sbjct: 148 EAAHMLGEFIKDMDNIEKIELLPYHKLGAHKWEALGLEYPLEGTNPPSKEVMDSIVSILE 207

Query: 343 RSGYSS 348
           +   + 
Sbjct: 208 QYHSNV 213


>gi|291279225|ref|YP_003496060.1| hypothetical protein DEFDS_0828 [Deferribacter desulfuricans SSM1]
 gi|290753927|dbj|BAI80304.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 308

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 74/193 (38%), Gaps = 29/193 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL C +C  G        T  EI              P     E  +I    + I ++V
Sbjct: 27  CSLDCVYCEVGK------TTDFEI-------ERKRFFAPDDLLSEFKIIYERKKDIIDVV 73

Query: 184 -MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
              G GEP  N D     L+  +  +  +   + + + T+G +     V  E+   L   
Sbjct: 74  TFTGAGEPTLNID-----LTYLASEVKKNI-DKPLAVLTNGTLLFREDVRNEL---LIFD 124

Query: 243 LHAV-SNDLRNILVPI-NRKYP---LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +     + +   +    NR +P   +E +I   + +  +    ++  E +++KG+NDS  
Sbjct: 125 IVVPSFDAVSEDIFKRVNRPHPELKIEKIIKGLKEFSQI-FKGKLFVEILLVKGVNDSNE 183

Query: 298 DALNLIKILKGIP 310
           +   +  +LK I 
Sbjct: 184 ELDKIANVLKDIN 196


>gi|242277914|ref|YP_002990043.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
           salexigens DSM 2638]
 gi|242120808|gb|ACS78504.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
           salexigens DSM 2638]
          Length = 423

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 78/240 (32%), Gaps = 43/240 (17%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG---LSFSKRRIT 218
           P         +     +I+   + G G+P  N +   +++ + +          S   + 
Sbjct: 58  PFQAAEYMDAVLEKEPRITVAGIAGPGDPFANPEETLETMRLLNKKHPHLIFCLSSNGM- 116

Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP------------LEML 266
               G +P +  + E     + I++ A+   +   +    +               LE  
Sbjct: 117 ----GILPYLDELKELGVSHVTITISAIDPKIGAKIYSWVKDGKVVYHGEKGAKVLLERQ 172

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325
           + A +          +    +++ GIN+       + K+   + A I N+IP  P     
Sbjct: 173 LAAIKGLKER--GITVKINSIVIPGINEH--HIAEVSKVCADLGADIQNMIPLKPTADTP 228

Query: 326 YL---CSDQKDI----VTFSECIKRSGYSSPIRTPR-------GLDILAA-CGQLKSLSK 370
           +        + I        + I++    +  R  R       G D   A CG +KS S+
Sbjct: 229 FADIIEPGHETIGPLRKEACKVIEQM---THCRRCRADAVGLLGDDKSVALCGTMKSCSE 285


>gi|168998753|ref|YP_001688021.1| hypothetical protein pK2044_00975 [Klebsiella pneumoniae
           NTUH-K2044]
          Length = 369

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 8/144 (5%)

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
           G      R+ E     L + L AV+ ++R  ++P   +  +E  ++A      +    ++
Sbjct: 215 GDAKWFTRMKEAGIDALGMHLEAVTPEVRARIMPGKAQVSVEQYLEAFADAVAVFGRGQV 274

Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIK 342
           +  Y++  G+ D+P   L+L + L G+     ++PF P  G         D    S  ++
Sbjct: 275 S-TYIL-AGLGDTPEAILSLSQTLIGLGVYPFVVPFVPISGTPLEHHPAPDSRFMSSILQ 332

Query: 343 RSGY---SSPIRTPRGLDILAACG 363
             G     + +R+    DI A CG
Sbjct: 333 PLGQMLNQAHLRSS---DIKAGCG 353


>gi|38639531|ref|NP_943300.1| hypothetical protein LV045 [Klebsiella pneumoniae]
 gi|38016629|gb|AAR07650.1| hypothetical protein LV045 [Klebsiella pneumoniae]
 gi|238549777|dbj|BAH66128.1| hypothetical protein KP1_p235 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 380

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 8/144 (5%)

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
           G      R+ E     L + L AV+ ++R  ++P   +  +E  ++A      +    ++
Sbjct: 226 GDAKWFTRMKEAGIDALGMHLEAVTPEVRARIMPGKAQVSVEQYLEAFADAVAVFGRGQV 285

Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIK 342
           +  Y++  G+ D+P   L+L + L G+     ++PF P  G         D    S  ++
Sbjct: 286 S-TYIL-AGLGDTPEAILSLSQTLIGLGVYPFVVPFVPISGTPLEHHPAPDSRFMSSILQ 343

Query: 343 RSGY---SSPIRTPRGLDILAACG 363
             G     + +R+    DI A CG
Sbjct: 344 PLGQMLNQAHLRSS---DIKAGCG 364


>gi|268610260|ref|ZP_06143987.1| radical SAM family protein [Ruminococcus flavefaciens FD-1]
          Length = 455

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 30/181 (16%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++    C L C +C+  T    +              R L+    G   I+ ++  S
Sbjct: 96  AMCLNIAHDCQLRCKYCFASTGDFGK-------------GRKLMSLETGKHAIDFLLENS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             R    +   G GEPL NF+ VK+ +  A         K R T++T+G + +  ++   
Sbjct: 143 GDRPNLELDFFG-GEPLMNFNVVKQIVEYARSREKEYNKKFRFTITTNGLLLDDDKIDFI 201

Query: 232 -GEEIGVMLAISLH-AVSNDLR---------NILVPINRKYPLEMLIDACRHYPGLSNAR 280
             E   V+L+I     V++  R         ++++P  +K  L        +Y   +   
Sbjct: 202 NKEMSNVVLSIDGRKEVNDYFRVLPNGQGCYDMIMPKYKK--LVEGRGDKEYYVRGTFTN 259

Query: 281 R 281
           R
Sbjct: 260 R 260


>gi|323174998|gb|EFZ60613.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli LT-68]
          Length = 246

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 87  FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FTKYLANKN-VKVWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 236 ILEQYGHKV 244


>gi|296116848|ref|ZP_06835454.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976649|gb|EFG83421.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 369

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 16/143 (11%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+ +     L + L A +  +R  ++P      ++  ++A      +    ++   Y+
Sbjct: 223 FHRLRDAGADSLGMHLEAATQAVREKIMPGKATVSIDRYMEAFASAVPIFGRGQVN-TYI 281

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSEC 340
           +  G+ DS  D L L   L  +     ++PF P  G             + +        
Sbjct: 282 L-AGLGDSAEDILALAGRLIALGVYPFVVPFVPISGTPLENHAPPSSDFMKSVLAPLGRM 340

Query: 341 IKRSGYSSPIRTPRGLDILAACG 363
           ++ +   S        DI A CG
Sbjct: 341 LREANMKST-------DIRAGCG 356


>gi|255067413|ref|ZP_05319268.1| pyruvate formate-lyase 1-activating enzyme [Neisseria sicca ATCC
           29256]
 gi|255048383|gb|EET43847.1| pyruvate formate-lyase 1-activating enzyme [Neisseria sicca ATCC
           29256]
          Length = 270

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 79/256 (30%), Gaps = 74/256 (28%)

Query: 123 GCSLTCSFCYTGTQKLVRN-----------LTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
           GC + C +C+       R+           +T  E++ QV+  R  L    G     G  
Sbjct: 51  GCLMRCLYCH------NRDTWDLHTEQAQEMTVPEVMKQVMSYRHYLRATGGGVTATGG- 103

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKK--------SLSIASDSMGLSFSKRRITLSTSG 223
                            EPL  ++ V+          +    DS G +            
Sbjct: 104 -----------------EPLLQYEFVRDWFTACQEHDIHTCLDSNGYAL----------H 136

Query: 224 FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
           +   +  + +    ++ + L  +  ++  +LV      P    +    +        R+ 
Sbjct: 137 YDSILDDLLDHTN-LVMLDLKQIDPEIHKVLV----GIPNTKTLKFAHYLAERKQPARV- 190

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEY------------LCS 329
             YV++ G  D  R A  L + +  +     + L+P++     ++               
Sbjct: 191 -RYVVVPGYTDDDRSAHLLGEFIADMDNVEMVELLPYHELGAHKWALCGDTYKLTGVHPP 249

Query: 330 DQKDIVTFSECIKRSG 345
            ++ I+     ++  G
Sbjct: 250 PKETILKIKSILESYG 265


>gi|300722527|ref|YP_003711817.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus nematophila
           ATCC 19061]
 gi|297629034|emb|CBJ89619.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus nematophila
           ATCC 19061]
          Length = 246

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +    R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKT--VTVEELVKEATTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
                V    GE +   + V+     A  + G++       L T+GFV      I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHAEGIN-----TCLDTNGFVRRYDSIIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++D+   LV ++    LE       HY    N  R    YV++   +
Sbjct: 123 NTD-LVMLDLKQLNDDIHQKLVGVSNHRTLE-----FAHYLAKRNQ-RTWIRYVVVPDWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339
           D       L +  K +    KI L+P++          G EY         ++ +    +
Sbjct: 176 DDDNSVHLLGEFTKNMKNIEKIELLPYHELGKHKWIAMGEEYKLDDVHPPSKETMDKVKD 235

Query: 340 CIKRSGYSS 348
            +   G+  
Sbjct: 236 ILCSYGHHV 244


>gi|59712198|ref|YP_204974.1| pyruvate formate lyase-activating enzyme 1 [Vibrio fischeri ES114]
 gi|59480299|gb|AAW86086.1| pyruvate formate lyase activating enzyme 1 [Vibrio fischeri ES114]
          Length = 245

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T  E++ +    R  +    G     G        
Sbjct: 28  GCLMRCMYCHNRDTWDTHDGKE--VTVAELIEEAKSYRHFMKASGGGITCSG-------- 77

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
                     GE +   + V+     A+ + G+        L T+G++      I  V E
Sbjct: 78  ----------GEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVIDEVLE 121

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  + +D+    + ++       ++D  R+   +   ++    YV++ G  
Sbjct: 122 ASD-LVMLDLKQMKDDVHKEFIGVSNT----RVLDFARYLHKI--GQKTWIRYVIVPGYT 174

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D    A  L   +K +    KI L+P++     ++                ++ +    E
Sbjct: 175 DDEESAHLLGNFIKDMDNIEKIELLPYHKLGAHKWEALGHDYPLEGVNPPSKETMEKMVE 234

Query: 340 CIKRSGYSS 348
            + +   + 
Sbjct: 235 ILSQYHNNV 243


>gi|51891252|ref|YP_073943.1| pyruvate formate lyase activating enzyme [Symbiobacterium
           thermophilum IAM 14863]
 gi|51854941|dbj|BAD39099.1| pyruvate formate lyase activating enzyme [Symbiobacterium
           thermophilum IAM 14863]
          Length = 255

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 85/279 (30%), Gaps = 63/279 (22%)

Query: 95  RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQV 151
           R  G    +E+    +       V  Q GC L C +C+   T        +T   ++ ++
Sbjct: 14  RRTGRIHSVESCGAVDGPGLRFVVFVQ-GCPLRCRYCHNPDTWDPGQGAEVTVGSLIEEI 72

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK--------SLSI 203
                 +    G   + G                   EPL   D V           +  
Sbjct: 73  QSYVPYMKFSGGGVTVSGG------------------EPLLQPDFVADLFAECRRLFIHT 114

Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263
           A D+ G +                  RV E+  ++L + +    + LR+  +      P 
Sbjct: 115 ALDTSGFA------------PPERARRVLEQTDLLL-LDIKHP-DLLRHKALTGVDGRPP 160

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPW 321
                        +    I   YV++ G  DSP D   L  +++ +P   K+ L+P++  
Sbjct: 161 RTT-----ARLAAAMGIPIWIRYVVVPGWTDSPADVEALADLVQTLPTVEKVELLPYHLL 215

Query: 322 PGCEYL------------CSDQKDIVTFSECIKRSGYSS 348
              ++                ++ +    + +   G  +
Sbjct: 216 GRHKWEALGLPYGLDGVAPPSEETLARIRQQLADRGIPA 254


>gi|240950300|ref|ZP_04754575.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus minor
           NM305]
 gi|240295202|gb|EER46010.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus minor
           NM305]
          Length = 246

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 84/245 (34%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         ++ E+++ +V+  +  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDLDGGKE--ISVEDLMKEVVTYKHFMKATGGGVTASGGEAVLQME 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +    D+ G              + P +  + E   +
Sbjct: 87  FVRDWFRACKAEG----------IDTCLDTNGF----------VRHYSPLVDEMLEVTDL 126

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +L + L  +++++   L+ ++ K      +D  R+   L+   R    YV++ G  D   
Sbjct: 127 VL-LDLKQLNDEIHQDLIGVSNK----RTLDFARYLQKLNK--RTWIRYVVVPGYTDDDD 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343
            A  L + ++G+    K+ L+P++     ++                ++ +      I+ 
Sbjct: 180 SAHRLGQFIQGMENIEKVELLPYHRLGAHKWETLGYKYELEGVLPPPKEKLEHLKGIIES 239

Query: 344 SGYSS 348
            G++ 
Sbjct: 240 YGHAV 244


>gi|119774634|ref|YP_927374.1| pyruvate formate lyase-activating enzyme 1 [Shewanella amazonensis
           SB2B]
 gi|119767134|gb|ABL99704.1| (Formate-C-acetyltransferase)-activating enzyme [Shewanella
           amazonensis SB2B]
          Length = 246

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 72/246 (29%), Gaps = 48/246 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +  +E++ Q+L  R  L    G     G        
Sbjct: 29  GCLMRCQYCHNRDTWDLDGGKE--MQVDELMSQILSYRPFLDASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            ++++      E           +    D+ G              + P I  + +   +
Sbjct: 87  FVADLFKACRAEG----------IHTCLDTNGF----------VRKYTPAIDVLLDNTDL 126

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +L + +  + +     L  ++    L+        Y    +  +    YV++ G  +   
Sbjct: 127 VL-LDIKHIDDAKHQDLTKVSNHRTLQ-----FAEYLAKRDQ-KTWIRYVVVAGFTEDVE 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343
            A  L   +  +    K+ L+P++     ++                   +        R
Sbjct: 180 SAEKLADFIAPMGNVEKVELLPYHELGKHKWEAMGEDYPLKGVHPPTADTMEAIKAVFTR 239

Query: 344 SGYSSP 349
            G ++ 
Sbjct: 240 RGLTAT 245


>gi|303233472|ref|ZP_07320135.1| radical SAM domain protein [Finegoldia magna BVS033A4]
 gi|302495372|gb|EFL55115.1| radical SAM domain protein [Finegoldia magna BVS033A4]
          Length = 440

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 88/276 (31%), Gaps = 39/276 (14%)

Query: 47  IRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETV 106
           I     + D S+         + +   +  D K SC    K+             +IE  
Sbjct: 26  ISSIDEIEDKSK-------YKYFLRRTDFRDIKKSCSFKIKYPF----------SDIELT 68

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
            + +    ++ +     C+L C +C       +   T      Q    + +       + 
Sbjct: 69  NMYKNRVNSITLVLTENCNLRCKYC-----GYMPKYT-----NQNYKLKDMSKTV-AIKS 117

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
           I+ ++  S   +  +I   G GEPL   D +K+ +   +           I  +      
Sbjct: 118 IDFIMNSSNESETCHIGFYG-GEPLIKIDLIKECIDYINSKYPFRRPTYNIVTNAVLLDK 176

Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RIT 283
           NIA    E    + ISL   + +     V  N +   E      ++   +        +T
Sbjct: 177 NIAEFLMENNFKIIISLDGPTQEFNKYRVLPNDECSFEKAFKNIKNLYYMDPKYFRENVT 236

Query: 284 FEYVMLKGI-NDSPRDALNLIKILKGIPAKINLIPF 318
           +  VM  G  N+      NL K      + +N+I  
Sbjct: 237 YNVVMYNGPSNELFEVMDNLWK------SGVNMIEL 266


>gi|260583914|ref|ZP_05851662.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella elegans
           ATCC 700633]
 gi|260158540|gb|EEW93608.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella elegans
           ATCC 700633]
          Length = 253

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 78/244 (31%), Gaps = 55/244 (22%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C FC+   T      + +T++E+L + L  R+  G   G                
Sbjct: 31  GCRMRCEFCHNPDTWNIGGGKKITSQELLEEALRYRAFWGKKGG---------------- 74

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234
              V +  GEPL   D +            +       TL + G       P  ++  E 
Sbjct: 75  ---VTVSGGEPLLQVDFLIDFFKRC---KAMGI---HTTLDSCGMPFTYDEPFFSKFEEL 125

Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           +     + + +  + ++    L     K  L+        Y      + +   +V++   
Sbjct: 126 LEYTDLILLDIKHIDDEQHKKLTAWTNKNILQ-----LAEYLSEK-GQPVWIRHVLVPER 179

Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNP-------WPGCEYL-----CSDQKDIVTFS 338
           +D       L + + G+    K  ++P++          G  Y         ++ +   +
Sbjct: 180 SDYDEYLERLSEFVAGLKNVLKFEVLPYHRLGVYKWKNLGIPYKLEHIEPPTKERVANAN 239

Query: 339 ECIK 342
             ++
Sbjct: 240 RILR 243


>gi|261339237|ref|ZP_05967095.1| hypothetical protein ENTCAN_05472 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319093|gb|EFC58031.1| pyruvate formate-lyase 1-activating enzyme [Enterobacter
           cancerogenus ATCC 35316]
          Length = 246

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 87  FVRD---------------WFRACR----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++        ++  ++  G     +    YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYISGK--GIKTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 236 ILEQYGHKV 244


>gi|331002527|ref|ZP_08326045.1| hypothetical protein HMPREF0491_00907 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410343|gb|EGG89777.1| hypothetical protein HMPREF0491_00907 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 463

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 20/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+             E   +    R+L+    G   ++ +V  S
Sbjct: 107 ALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSYDVGKRALDFLVANS 153

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
             R+   +   G GEPL N+  VK  +         +  K R T++T+G +    I    
Sbjct: 154 GNRRNLEVDFFG-GEPLMNWQVVKDLVKYGRSLEEANNKKFRFTITTNGMLLNDEIMEFC 212

Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             E   V+L++      ND   +      K   ++++     +      +         +
Sbjct: 213 NQEMSNVVLSLDGRKEVND--AMRPTRGGKGSYDVIVPKFVKFAESRGTKDYYIRGTFTR 270

Query: 291 GINDSPRDALNLIKI 305
              +  +D L+   +
Sbjct: 271 NNLEFSKDVLHFADL 285


>gi|241760150|ref|ZP_04758248.1| pyruvate formate-lyase 1-activating enzyme [Neisseria flavescens
           SK114]
 gi|241319604|gb|EER56034.1| pyruvate formate-lyase 1-activating enzyme [Neisseria flavescens
           SK114]
          Length = 289

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 77/245 (31%), Gaps = 52/245 (21%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    +     L               + M      R     
Sbjct: 70  GCLMRCLYCH--------NRDTWD-----LHTEQAQELDVATVMKQVMTYRHYLRATGGG 116

Query: 183 VMMGMGEPLCNFDNVKK--------SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
           V    GEPL  ++ V+          +    DS G +            +   +  + + 
Sbjct: 117 VTATGGEPLLQYEFVRDWFTACREHDIHTCLDSNGYAL----------HYDSILDDLLDH 166

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              ++ + L  +  ++  +LV      P    +   R+    +   R+   YV++ G  D
Sbjct: 167 TN-LVMLDLKQIDPEIHKVLV----GIPNTKTLKFARYLAERNQPMRV--RYVVVPGYTD 219

Query: 295 SPRDALNLIKILKGIPAK--INLIPFNP-------WPGCEYL-----CSDQKDIVTFSEC 340
             R A  L + +  +     + L+P++          G EY         ++ I+   E 
Sbjct: 220 DERSAHLLGEFIGDMDNVEMVELLPYHELGAHKWALCGDEYKLKGVHPPPKETILKIKEI 279

Query: 341 IKRSG 345
           ++  G
Sbjct: 280 LESYG 284


>gi|127513319|ref|YP_001094516.1| pyruvate formate lyase-activating enzyme 1 [Shewanella loihica
           PV-4]
 gi|126638614|gb|ABO24257.1| pyruvate formate-lyase activating enzyme [Shewanella loihica PV-4]
          Length = 246

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 83/244 (34%), Gaps = 46/244 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        +L     +   +L   ++   P  E   G V  S G  I   
Sbjct: 29  GCLMRCQYCHNRD---TWDLHGGHEIEVDVLMEQIISYRPFLESSGGGVTASGGEAILQA 85

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGEEIGVM 238
                            +L  A  + G+        L T+GFV    P I  + +   ++
Sbjct: 86  EF-------------VAALFKACKAQGI-----HTCLDTNGFVRKYTPVIDELLDNTDLV 127

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           L + +  + +D    L  ++    L+        Y      +++   YV++ G  D    
Sbjct: 128 L-LDIKHIDDDQHIALTHVSNHRTLQ-----FAQYLQKR-QQKVWIRYVVVGGYTDDIAS 180

Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRS 344
           A  L + +K +    K+ L+P++     ++                ++ +    +    +
Sbjct: 181 AKGLAEFIKPMTNVEKVELLPYHELGKHKWEAMGEEYTLKDISPPSRETMEQIKQVFVEA 240

Query: 345 GYSS 348
           G ++
Sbjct: 241 GITA 244


>gi|294056359|ref|YP_003550017.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615692|gb|ADE55847.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221]
          Length = 428

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 77/238 (32%), Gaps = 50/238 (21%)

Query: 124 CSLTCSFCY-------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           C+++C+FC             +  N+                   P         +    
Sbjct: 34  CNVSCNFCNRKFDCVNESRPGVTSNIMT-----------------PKQALEYTKKVLGKS 76

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS--GFVPNIARVGEE 234
            KIS + + G G+P  N +   ++  +             + ++++  G +P + R+   
Sbjct: 77  EKISVVGIAGPGDPFANPEETMETFELVRQEY----PNTMLCVASNGLGILPYVDRLAAL 132

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRI 282
               + I+++ +  D+   +    R               ++  ++A R     ++   +
Sbjct: 133 KVSHVTITVNGIDPDVVAEVYAWARADKKVYRGQAMGEMIVKRQLEAIRAI--RAHGIMV 190

Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYLC---SDQKDIVT 336
               +++ G+ND       +  + K      +N IP  P     +      DQK I  
Sbjct: 191 KINSIIIPGVNDH--HIPEISNMAKEHGCEMMNCIPMIPVENTPFESLGEPDQKMIAR 246


>gi|331651920|ref|ZP_08352939.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M718]
 gi|331050198|gb|EGI22256.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M718]
          Length = 255

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 38  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 95

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 96  FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 131

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++D+   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 132 VTD-LVMLDLKQMNDDIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 184

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 185 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 244

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 245 ILEQYGHKV 253


>gi|119356571|ref|YP_911215.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353920|gb|ABL64791.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium
           phaeobacteroides DSM 266]
          Length = 423

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 80/236 (33%), Gaps = 40/236 (16%)

Query: 124 CSLTCSFCYTG--TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           C++ C++C          R     +IL             P           ++   I+ 
Sbjct: 30  CNIQCNYCNRKFDCMNENRPGVTSKILS------------PLQAMHYLEQAIALTPSIAV 77

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239
           + + G G+P  N D   ++L +          +  + ++T+G   +P I  + E     +
Sbjct: 78  VGIAGPGDPFANPDETMETLRLVRAKY----PEMLLCVATNGLDVLPYINELAELKVSHV 133

Query: 240 AISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEYV 287
            I+++A+  ++ + +    R               +   ++A +               +
Sbjct: 134 TITINAIDPEIGSEIYAWVRYNKKMYRDVEAAELLINKQLEALKKLKEA--GVTAKVNSI 191

Query: 288 MLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL---CSDQKDIVTFSE 339
           ++ GIND+    + + + + G+ A I N +P+       +        + +     
Sbjct: 192 IIPGINDT--HVIEVARKVAGLGADILNCMPYYSTTETVFENIDEPSPEVVSEIQN 245


>gi|323698700|ref|ZP_08110612.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio sp.
           ND132]
 gi|323458632|gb|EGB14497.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
           desulfuricans ND132]
          Length = 422

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 25/181 (13%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG---LSFSKRRIT 218
           P         +     +I+   + G G+P  N     +++ + +          S   + 
Sbjct: 58  PFQAAEYMEKVLEKEPRITVAGIAGPGDPFANPAETLETMRLLNAKHPELIFCLSTNGM- 116

Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP------------LEML 266
               G +P +  + E     + I++ AV   +   +    +               L+  
Sbjct: 117 ----GILPYLDDIAELGVSHVTITISAVDPAIGAQIYAWVKDGNVVYHGEKGAEILLDRQ 172

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325
           + A +          +    +++ GIND     + + K+   + A I N+IP  P     
Sbjct: 173 LKAIKGLKER--GITVKINSIVIPGINDH--HLVEVAKVCASLGADIQNMIPLKPTADTP 228

Query: 326 Y 326
           +
Sbjct: 229 F 229


>gi|170769309|ref|ZP_02903762.1| pyruvate formate-lyase 1-activating enzyme [Escherichia albertii
           TW07627]
 gi|170121961|gb|EDS90892.1| pyruvate formate-lyase 1-activating enzyme [Escherichia albertii
           TW07627]
          Length = 265

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 48  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 141

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    +  ++   YV++ G +
Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKD-VKVWIRYVVVPGWS 194

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 254

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 255 ILEQYGHKV 263


>gi|91793759|ref|YP_563410.1| pyruvate formate lyase-activating enzyme 1 [Shewanella
           denitrificans OS217]
 gi|91715761|gb|ABE55687.1| Pyruvate formate-lyase activating [Shewanella denitrificans OS217]
          Length = 245

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 78/250 (31%), Gaps = 56/250 (22%)

Query: 123 GCSLTCSFCYT----GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           GC + C +C+           R ++  E      L   ++   P  +   G V  S G  
Sbjct: 28  GCLMRCQYCHNRDSWDLDGGTR-VSVAE------LMAKIIDYKPFLDASNGGVTASGGEA 80

Query: 179 ISNIVMMGMGEPLCNFDNVKKS-----LSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
           I     +           + K+     +    D+ G              ++P I  + +
Sbjct: 81  ILQAEFVA---------ELFKACKDNHIHTCLDTNGF----------VRKYIPIIDELLD 121

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              ++L + +  + +D    L  ++ +  LE        Y      ++    YV++ G  
Sbjct: 122 NTDLVL-LDIKQMFDDKHIALTKVSNQRTLE-----FAQYLAKR-GQKTWIRYVVIDGFT 174

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
                A+ L   +K +    K+ L+P++     ++                ++ +     
Sbjct: 175 ADEASAIALADFIKPMTNVEKVELLPYHQLGAHKWQAFGESYSLSHVSPPSKETMERICG 234

Query: 340 CIKRSGYSSP 349
                G ++ 
Sbjct: 235 VFNARGINAS 244


>gi|167629098|ref|YP_001679597.1| radical sam protein, putative [Heliobacterium modesticaldum Ice1]
 gi|167591838|gb|ABZ83586.1| radical sam protein, putative [Heliobacterium modesticaldum Ice1]
          Length = 470

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 73/217 (33%), Gaps = 25/217 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+ GT     +             RSL+    G + ++ ++  S
Sbjct: 111 ALCLHVAHDCNLRCGYCFAGTGPFGGD-------------RSLMPVETGKQAVDFLLAHS 157

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFVPNIARV 231
            GR+   I   G GEPL N D VK+ +      +   G        T            +
Sbjct: 158 QGRRHVEIDFFG-GEPLLNVDVVKELVAYAKRRAAEEGKVLKLTLTTNGLLLDEETGRYL 216

Query: 232 GEE-IGVMLAISLHAVSNDLRNILVPINR-KYPLEMLIDACRHYPGLSNARRITFEYVML 289
            EE + V+L++       ++ + + P        + +      +                
Sbjct: 217 NEEGLSVVLSLDGRR---EVHDRMRPYADGSGSYDDVAANLLAFVQSRGGEDYYVRGTFT 273

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
               D   D L++  +  G    I++ P    P  +Y
Sbjct: 274 GHNPDFAADVLHIHDL--GFR-HISVEPVVAPPDVDY 307


>gi|197304077|ref|ZP_03169102.1| hypothetical protein RUMLAC_02814 [Ruminococcus lactaris ATCC
           29176]
 gi|197296849|gb|EDY31424.1| hypothetical protein RUMLAC_02814 [Ruminococcus lactaris ATCC
           29176]
          Length = 249

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 77/245 (31%), Gaps = 49/245 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC+                      +              +   S  +K   I
Sbjct: 30  GCPMRCQFCHNPD---------------TWKMQDGEERTTDELLKTALRYRSYWKKEGGI 74

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237
            + G GEPL   D +      A              + T G V     P  +++ E +  
Sbjct: 75  TVSG-GEPLMQMDFMIDLFKKAKAE------GVHTNIDTCGAVFTREEPFFSKLEELMKY 127

Query: 238 --MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
             ML + +  + ++   IL   + K     +++  R+   +     I   +V++   +D 
Sbjct: 128 TDMLMLDIKHIDDEQHKILTGHSNKN----ILEFARYLSDIKK--PIWIRHVLVPERSDY 181

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECI 341
                 L   ++ +    K+ ++P++     ++                ++ +   +  +
Sbjct: 182 DEYLERLHDFIETLDNVEKVEVLPYHTLGEYKWKELGYDYPLAGIDPPTKERVENANRIL 241

Query: 342 KRSGY 346
           + + Y
Sbjct: 242 ETAKY 246


>gi|317491449|ref|ZP_07949885.1| pyruvate formate-lyase 1-activating enzyme [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920996|gb|EFV42319.1| pyruvate formate-lyase 1-activating enzyme [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 246

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 79/249 (31%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++  V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGTE--ITVEDLMKDVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + +
Sbjct: 87  FVRD---------------WFRACK----EEGI-----HTCLDTNGFVRRYDPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++D+   LV ++    LE        Y    N  +    YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDDIHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L    K +    KI L+P++     ++                 + +     
Sbjct: 176 DDDASAHLLGDFTKDMTNVEKIELLPYHELGKHKWEAMGEEYKLGGVKPPSHETMERVKN 235

Query: 340 CIKRSGYSS 348
            ++  G+  
Sbjct: 236 ILESYGHKV 244


>gi|197335857|ref|YP_002156408.1| pyruvate formate-lyase 1-activating enzyme [Vibrio fischeri MJ11]
 gi|197317347|gb|ACH66794.1| pyruvate formate-lyase 1-activating enzyme [Vibrio fischeri MJ11]
          Length = 245

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 83/252 (32%), Gaps = 62/252 (24%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T  E++ +    R  +    G     G        
Sbjct: 28  GCLMRCMYCHNRDTWDTHDGKE--VTVAELIEEAKSYRHFMKASGGGITCSG-------- 77

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
                     GE +   + V+     A+ + G+        L T+G++      I  V E
Sbjct: 78  ----------GEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVIDEVLE 121

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  + +D+    + ++       ++D  R+   +   ++    YV++ G  
Sbjct: 122 ASD-LVMLDLKQMKDDIHKEFIGVSNT----RVLDFARYLHKI--GQKTWIRYVIVPGYT 174

Query: 294 DSPRDALNLIKILKGIPAKIN-----LIPFNPWPGCEYL------------CSDQKDIVT 336
           D    A  L   +K +   +N     L+P++     ++                ++ +  
Sbjct: 175 DDEESAHLLGDFIKDM---VNIEKIELLPYHKLGAHKWEALGHDYPLEGVNPPSKETMEK 231

Query: 337 FSECIKRSGYSS 348
             E + +   + 
Sbjct: 232 MVEILSQYHNNV 243


>gi|237807654|ref|YP_002892094.1| pyruvate formate-lyase activating enzyme [Tolumonas auensis DSM
           9187]
 gi|237499915|gb|ACQ92508.1| pyruvate formate-lyase activating enzyme [Tolumonas auensis DSM
           9187]
          Length = 248

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 76/247 (30%), Gaps = 50/247 (20%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T ++++  +L  R  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDTEGGKE--VTVDDLMKDLLAYRHFIKASGGGVTASGGEATLQKE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            ++        E           +    D+ G              +   +  + ++   
Sbjct: 87  FVTEWFKACKAEG----------IHTCLDTNGF----------IRHYDEALDALLDQTD- 125

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + +  +++++   L  ++ KY LE        Y        I   YV++ G +D   
Sbjct: 126 LVMLDIKHMNDEIHIPLTHVSNKYCLE-----FARYLAKKGKT-IWIRYVVVPGWSDDDA 179

Query: 298 DALNLIKILKGIPA----KINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
            A  L   ++        KI ++P++     ++                ++ +    E +
Sbjct: 180 GAHALGAFIRDELGGKVEKIEMLPYHELGKHKWTAMGEKYELEGIHPPKKEVMEHLKEIL 239

Query: 342 KRSGYSS 348
              G  +
Sbjct: 240 VSYGIKA 246


>gi|302343639|ref|YP_003808168.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640252|gb|ADK85574.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075]
          Length = 423

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 72/177 (40%), Gaps = 16/177 (9%)

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG---EPLCNFDNVKKSLSIASDSMGLS 211
           +  +   P  E++  + +     K   +V  G G   EPL   D + K++ +      L 
Sbjct: 216 QERIKFTPSPEEVAEVALHHFRNKREALVSFGQGCEGEPLLQADLLSKAIRLIRLEEPLG 275

Query: 212 FSKRRITLSTSGFVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
                I L+T+G  P  + R+  +    + +S++++  + R+      + + L   ID+ 
Sbjct: 276 ----TINLNTNGSRPDQVGRLMTDGLSSIRVSVNSLIPE-RHAAYYRPKGWSLAQAIDSL 330

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF---NPWPGC 324
           +           +   + + G+ D P +   L ++++    K++LI +   N  P  
Sbjct: 331 K--AVKRAGGHASLNLLTMPGLTDRPEEMDALCQVIEQT--KLDLIQWRNINIDPEI 383


>gi|301154949|emb|CBW14412.1| pyruvate formate lyase activating enzyme 1 [Haemophilus
           parainfluenzae T3T1]
          Length = 246

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 89/246 (36%), Gaps = 50/246 (20%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T   +  R ++ EE++ +V+  R  +    G     G         +
Sbjct: 29  GCLMRCKYCHNRDTWDLEGGREISVEELMKEVVSYRHFMNATGGGVTASGGEAVLQAEFV 88

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
            +                 ++      + G++       L T+GFV +   + +E+  + 
Sbjct: 89  RD---------------WFRACK----AEGIN-----TCLDTNGFVRHYDHIIDELLDVT 124

Query: 240 AISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            + L  +   ++ +   L+ +  K  LE        Y    N  R    YV++ G  DS 
Sbjct: 125 DLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQ-RTWIRYVVVPGYTDSD 178

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
            D   L + ++G+    K+ L+P++     ++                ++ +      ++
Sbjct: 179 HDIHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTLGFDYELEDVLPPTKESLEHIKNILE 238

Query: 343 RSGYSS 348
             G++ 
Sbjct: 239 GYGHTV 244


>gi|261364596|ref|ZP_05977479.1| pyruvate formate-lyase 1-activating enzyme [Neisseria mucosa ATCC
           25996]
 gi|288567181|gb|EFC88741.1| pyruvate formate-lyase 1-activating enzyme [Neisseria mucosa ATCC
           25996]
          Length = 270

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 79/256 (30%), Gaps = 74/256 (28%)

Query: 123 GCSLTCSFCYTGTQKLVRN-----------LTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
           GC + C +C+       R+           +T  E++ QV+  R  L    G     G  
Sbjct: 51  GCLMRCLYCH------NRDTWDLHTEQAQEMTVPEVMKQVMSYRHYLRATGGGVTATGG- 103

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKK--------SLSIASDSMGLSFSKRRITLSTSG 223
                            EPL  ++ V+          +    DS G +            
Sbjct: 104 -----------------EPLLQYEFVRDWFTACYEHDIHTCLDSNGYAL----------H 136

Query: 224 FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
           +   +  + +    ++ + L  +  ++  +LV      P    +    +        R+ 
Sbjct: 137 YDSILDDLLDHTN-LVMLDLKQIDPEIHKVLV----GIPNTKTLKFAHYLAERKQPARV- 190

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEY------------LCS 329
             YV++ G  D  R A  L + +  +     + L+P++     ++               
Sbjct: 191 -RYVVVPGYTDDDRSAHLLGEFIADMDNIEMVELLPYHELGAHKWALCGDTYKLTGVHPP 249

Query: 330 DQKDIVTFSECIKRSG 345
            ++ I+     ++  G
Sbjct: 250 PKETILKIKSILESYG 265


>gi|149191035|ref|ZP_01869296.1| pyruvate formate lyase activating enzyme 1 [Vibrio shilonii AK1]
 gi|148835169|gb|EDL52145.1| pyruvate formate lyase activating enzyme 1 [Vibrio shilonii AK1]
          Length = 246

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 82/245 (33%), Gaps = 56/245 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         ++ +E++ +    R  +    G     G        
Sbjct: 29  GCLMRCMYCHNRDTWDTHGGKE--VSVDELIAEAKSYRHFMNASGGGITCSG-------- 78

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233
                     GE +   + V+     A+ + G+        L T+G++      I  V +
Sbjct: 79  ----------GEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVIDEVLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              +++    H      ++ +   NR+      +D  R+   +   ++    YV++ G  
Sbjct: 123 ATDLVMLDIKHMKDEIHQDFIGVSNRR-----TLDFARYLHKI--GQKTWIRYVVVPGYT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D P  A  L + +K +    K+ L+P++     ++                ++ +     
Sbjct: 176 DDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGFEYPLEGTQPPTKEVMDNIQN 235

Query: 340 CIKRS 344
            + + 
Sbjct: 236 ILLQY 240


>gi|242238235|ref|YP_002986416.1| radical SAM protein [Dickeya dadantii Ech703]
 gi|242130292|gb|ACS84594.1| Radical SAM domain protein [Dickeya dadantii Ech703]
          Length = 469

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 88/274 (32%), Gaps = 37/274 (13%)

Query: 36  SQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR 95
            Q ++++      +     +    +   L + F ++   I +  I         +R+   
Sbjct: 46  QQAYEYL---CRNNIDNNENTP--LIQQLKERFFLLPDNIDERDI-----INNEIRYRKE 95

Query: 96  CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
            +     +        +   L +++   C+  C++C+       RN        Q     
Sbjct: 96  HLDSGYLV--------NGLQLVLTN--DCNFKCTYCFAN----ERNNDQASSCAQKPQRM 141

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMGLSF 212
           +    F   E+I  ++  +    ++ I   G GEPL N    + V        +  G++ 
Sbjct: 142 TKEIAFLAVENIISVIKRNHNTHLT-IEFFG-GEPLLNWEIIEAVLDKYRS-GEDWGVNI 198

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
               IT + S     IA+  +  GV   +S     N  R       +  P E LI   R 
Sbjct: 199 -HYMITTNGSLISEKIAKTLKTYGVHTVLSYDTPGNHHRL----TTKNTPAEELI--LRG 251

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
              L           ++   N    DA  L++  
Sbjct: 252 LSNLKKHNNAVSINSVISHTNIDQFDADALLEFA 285


>gi|182417544|ref|ZP_02948871.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
           5521]
 gi|237665689|ref|ZP_04525677.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378713|gb|EDT76240.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
           5521]
 gi|237658636|gb|EEP56188.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 264

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 89/250 (35%), Gaps = 57/250 (22%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C FC+            R  TA+E+L Q L                     +  +
Sbjct: 42  GCHMRCQFCHNPDTWDINGGETR--TADELLSQAL------------------RYKTYWK 81

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVG 232
           K   I + G GEPL   D + +    A            +TL TSG       P  ++  
Sbjct: 82  KGGGITVSG-GEPLLQIDFLIEFFKKAKSK------GVHVTLDTSGNPFTREEPFFSKFN 134

Query: 233 EEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           E + V  L +      ++ ++ ++     +    ++D  +    ++    +   +V++ G
Sbjct: 135 ELMKVTDLVMLDIKQIDEEKHKILTG---WSNSNILDMAKFLSEINK--PVWIRHVLVPG 189

Query: 292 INDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTF 337
            +D+    + L + +K +    ++ ++P++     ++                ++ I   
Sbjct: 190 GSDNDEQLIKLDEFIKTLKNVDRVEVLPYHSLGTFKWEELGIEYPLKDVEPPTKERIENA 249

Query: 338 SECIKRSGYS 347
            + +  S Y+
Sbjct: 250 KKLLHTSEYN 259


>gi|262038411|ref|ZP_06011785.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia
           goodfellowii F0264]
 gi|261747506|gb|EEY34971.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia
           goodfellowii F0264]
          Length = 241

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 86/244 (35%), Gaps = 45/244 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N+            +         E ++ ++      +   +
Sbjct: 27  GCPLRCLYCH--------NVDT-------WNVKDKKFMMTPEEVMKEILKVKGFIRTGGV 71

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
            + G GEPL   + + +   +  ++           + TSG++    +  V +   ++L 
Sbjct: 72  TVSG-GEPLLQPEFITELFKLCKEND------IHTAVDTSGYMFNNKVKEVLKWTDLVL- 123

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + +  ++ +    L  +     LE  ++  ++   ++        YV++ G +D   D  
Sbjct: 124 LDIKHINPNKYKKLTSV----SLEHTLEFAKYLSEINK--NAWIRYVLVPGYSDDEEDLH 177

Query: 301 NLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGY 346
              K +       +++++PF+   G ++                ++++    E  K  G 
Sbjct: 178 EWAKFVSQFKNVTRVDILPFHQMGGYKWKEVGKEYKLADVKPPAREEVKKVEEIFKSYGL 237

Query: 347 SSPI 350
           +  I
Sbjct: 238 NVGI 241


>gi|154334708|ref|XP_001563601.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134060622|emb|CAM42171.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 416

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 81/236 (34%), Gaps = 32/236 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEE---ILLQ---VL--LARSLLGDFPGCEDIEGMVIPSV 175
           C+  C FC+    +L  N TA E   ++ +   V+  +  S      G   + G+   ++
Sbjct: 72  CANNCVFCW----RLNSNPTAAEWKWMVDEPKEVVEGMISSHQALINGVRGMPGVTDEAL 127

Query: 176 GRKI--SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
              +   +  +  +GEP+  +  V + L +         S     ++   F   I ++  
Sbjct: 128 EEALAPRHCALSLVGEPIM-YPYVNEFLRLLHAK-----SMSSFLVNNGQFPDAIRKLAP 181

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
                L +S+ A +     IL         E   ++        +  R  F   M+ G N
Sbjct: 182 VTQ--LYLSVDAPNKKTMKILDRPVLPDYWERFNESVNSMREKKH--RTVFRLTMIDGFN 237

Query: 294 DSPRDALNLIKIL-KGIPAKI---NLIP-FNPWPGCEYL---CSDQKDIVTFSECI 341
             P +     ++  +G P  I    L P F+               + +  F++ +
Sbjct: 238 MEPENLPEYKELFDRGQPHFIEIKRLTPAFSGNHNTILRIKNVPSWEKMKAFAQQL 293


>gi|157146410|ref|YP_001453729.1| pyruvate formate lyase-activating enzyme 1 [Citrobacter koseri ATCC
           BAA-895]
 gi|157083615|gb|ABV13293.1| hypothetical protein CKO_02169 [Citrobacter koseri ATCC BAA-895]
          Length = 255

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 80/245 (32%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 38  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 95

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E          S+    D+ G              + P I  + E    
Sbjct: 96  FVRDWFRACKKE----------SIHTCLDTNGF----------VRRYDPVIDELLEVTD- 134

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++++   LV ++        ++  ++        +    YV++ G +D   
Sbjct: 135 LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYISAK--GIKTWIRYVVVPGWSDDDD 188

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
            A  L +  + +    KI L+P++     ++                ++ +      +++
Sbjct: 189 SAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQ 248

Query: 344 SGYSS 348
            G+  
Sbjct: 249 YGHKV 253


>gi|315923970|ref|ZP_07920198.1| radical SAM domain protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622810|gb|EFV02763.1| radical SAM domain protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 464

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 33/232 (14%)

Query: 105 TVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164
            VY       ++C++    C+L C++C+        +             R L+    G 
Sbjct: 81  MVYQNYNLIKSMCLNVAHDCNLRCAYCFASQGDFNGD-------------RDLMPLEVGK 127

Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLST 221
           +  + +V  S  R    +   G GEPL NF  VK  +             F     T++T
Sbjct: 128 KAFDFLVAQSKNRHNLEVDFFG-GEPLMNFRVVKDLVAYGRSLEKEYNKRF---NFTMTT 183

Query: 222 SGFV--PNIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           +  +      R  ++    + +SL    AV++ +R     ++     +++I+  +    L
Sbjct: 184 NAVLLNDENMRWIDDNMNNVVLSLDGRKAVNDHMRK---TVSGGGSFDVIIENIKKMAAL 240

Query: 277 S--NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
              + +         K   D  +D   L K  +G  + +++ P        Y
Sbjct: 241 REASGKEYYVRGTYTKNNLDFGKDVEFLAK--QGFRS-VSVEPVVTDETKNY 289


>gi|301300126|ref|ZP_07206342.1| pyruvate formate-lyase 1-activating enzyme [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300215439|gb|ADJ79852.1| Pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
           CECT 5713]
 gi|300852300|gb|EFK79968.1| pyruvate formate-lyase 1-activating enzyme [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 278

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 56/245 (22%)

Query: 123 GCSLTCSFCYTGTQKLVR---NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C FC+       R    +T EE+L + L  RS  GD       +G +  S G  +
Sbjct: 43  GCHMRCKFCHNPDTWKTRVGSQMTTEEVLNKALPYRSFWGD-------KGGITLSGGEIL 95

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234
             I                 +L +         S     L T G       P  ++  E 
Sbjct: 96  LQIDF---------------ALELFKMCKEEGISTC---LDTCGQPFTRREPWFSKFNEL 137

Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           +     L + +  +++D    L      +P + ++D C +   +   + +   +V++ GI
Sbjct: 138 MDYTDILLVDIKHINSDEHKRLT----GFPNDNILDMCEYLSSI--GKPVWIRHVLIPGI 191

Query: 293 NDSPRDALNLIKILKGIPAKI---NLIPFNPWPGCEYL------------CSDQKDIVTF 337
            D+      L + +K     +    ++P++     +Y                 + +   
Sbjct: 192 TDNDEYLKQLGEYVKENLHNVEKFEVLPYHTMGVHKYQEMGIRYRLEGVEPPTPERVKNA 251

Query: 338 SECIK 342
            + ++
Sbjct: 252 EKLLE 256


>gi|227892250|ref|ZP_04010055.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
           ATCC 11741]
 gi|227865972|gb|EEJ73393.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
           ATCC 11741]
          Length = 278

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 56/245 (22%)

Query: 123 GCSLTCSFCYTGTQKLVR---NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C FC+       R    +T EE+L + L  RS  GD       +G +  S G  +
Sbjct: 43  GCHMRCKFCHNPDTWKTRVGSQMTTEEVLNKALPYRSFWGD-------KGGITLSGGEIL 95

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234
             I                 +L +         S     L T G       P  ++  E 
Sbjct: 96  LQIDF---------------ALELFKMCKEEGISTC---LDTCGQPFTRREPWFSKFNEL 137

Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           +     L + +  +++D    L      +P + ++D C +   +   + +   +V++ GI
Sbjct: 138 MDYTDILLVDIKHINSDEHKRLT----GFPNDNILDMCEYLSSI--GKPVWIRHVLIPGI 191

Query: 293 NDSPRDALNLIKILKGIPAKI---NLIPFNPWPGCEYL------------CSDQKDIVTF 337
            D+      L + +K     +    ++P++     +Y                 + +   
Sbjct: 192 TDNDEYLKQLGEYVKENLHNVEKFEVLPYHTMGVHKYQEMGIRYRLEGVEPPTPERVKNA 251

Query: 338 SECIK 342
            + ++
Sbjct: 252 EKLLE 256


>gi|90962847|ref|YP_536762.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
           UCC118]
 gi|90822041|gb|ABE00679.1| Pyruvate formate-lyase activating enzyme [Lactobacillus salivarius
           UCC118]
          Length = 278

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 56/245 (22%)

Query: 123 GCSLTCSFCYTGTQKLVR---NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C FC+       R    +T EE+L + L  RS  GD       +G +  S G  +
Sbjct: 43  GCHMRCKFCHNPDTWKTRVGSQMTTEEVLNKALPYRSFWGD-------KGGITLSGGEIL 95

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234
             I                 +L +         S     L T G       P  ++  E 
Sbjct: 96  LQIDF---------------ALELFKMCKEEGISTC---LDTCGQPFTRREPWFSKFNEL 137

Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           +     L + +  +++D    L      +P + ++D C +   +   + +   +V++ GI
Sbjct: 138 MDYTDILLVDIKHINSDEHKRLT----GFPNDNILDMCEYLSSI--GKPVWIRHVLIPGI 191

Query: 293 NDSPRDALNLIKILKGIPAKI---NLIPFNPWPGCEYL------------CSDQKDIVTF 337
            D+      L + +K     +    ++P++     +Y                 + +   
Sbjct: 192 TDNDEYLKQLGEYVKENLHNVEKFEVLPYHTMGVHKYQEMGIRYRLEGVEPPTPERVKNA 251

Query: 338 SECIK 342
            + ++
Sbjct: 252 EKLLE 256


>gi|212634770|ref|YP_002311295.1| pyruvate formate lyase-activating enzyme 1 [Shewanella
           piezotolerans WP3]
 gi|212556254|gb|ACJ28708.1| Pyruvate formate-lyase 1 activating enzyme [Shewanella
           piezotolerans WP3]
          Length = 246

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              +  +E++ Q++  R      P  E   G V  S G 
Sbjct: 29  GCLMRCQYCHNRDTWDLHGGKE--IKVDELMSQIISYR------PFLEASGGGVTASGGE 80

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            +     +           + K+        G+        L T+GFV    P I  + +
Sbjct: 81  AVLQPEFVA---------ELFKACK----KEGI-----HTCLDTNGFVRKYTPIIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              ++L + +  ++++    L  ++     +  +    H    +  ++    YV++ G  
Sbjct: 123 NTDLVL-LDIKQINDEKHIDLTKVSN----QRTLQFAEHLHKRN--QKTWIRYVVVGGFT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D    A  L + +K +    K+ L+P++     ++                 + +    +
Sbjct: 176 DDMPSAQALAEFIKPMTNVEKVELLPYHELGKHKWEAMGEEYELNQISPPTTETMEKIKQ 235

Query: 340 CIKRSGYSS 348
                G ++
Sbjct: 236 VFIDMGINA 244


>gi|116749201|ref|YP_845888.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698265|gb|ABK17453.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 443

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 84/221 (38%), Gaps = 27/221 (12%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
              R    + +   C+  C  C +   +             +   +  +   P  E+I G
Sbjct: 183 FMERWEAPLPTSPVCNARCLGCISLQDRKD-----------LRATQDRITFVPTPEEICG 231

Query: 170 MVIPSVGRKISNIVMMGMG---EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
           + +P + +    +V  G G   EPL   D + +++ +       +  +  I L+T+G +P
Sbjct: 232 VAVPHLEQAPRPVVSFGQGCEGEPLLQADTLAEAIRMMRA----ATPRGTINLNTNGSLP 287

Query: 227 N-IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
           + I  +       + ISL++      +      + Y  + +  +       S  R ++  
Sbjct: 288 HMIPELCAAGLDSIRISLNSARPAYYHAYF-NPQGYRFDDVRQSIL--AAKSAGRFVSIN 344

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKINLIP---FNPWPG 323
           Y +L G +D P +   L ++++    +I+LI     N  P 
Sbjct: 345 YFILPGFSDQPDELDALCRLIEET--RIDLIQMRNLNIDPE 383


>gi|297570416|ref|YP_003691760.1| nitrogenase cofactor biosynthesis protein NifB [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926331|gb|ADH87141.1| nitrogenase cofactor biosynthesis protein NifB [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 424

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 63/164 (38%), Gaps = 22/164 (13%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
           P    +    +     +IS + + G G+P  N +   ++L + ++      S + + LS+
Sbjct: 60  PDQALVYVDRVLEREPRISVVGIAGPGDPFANAEATMETLRLINEKY----SDKLLCLSS 115

Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP------------LEMLI 267
           +G    P+I  +       + I+++AV  ++   +    R               L   +
Sbjct: 116 NGMNIGPHIPELAALNVSHVTITVNAVDPEIGARIYGWVRDGKVLYRGRQAAELLLRRQL 175

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
           +A       +    +    +M+ G+ND  +    + + ++ + A
Sbjct: 176 EAIGRL--KAAGITVKINCIMIPGVND--QHIPAVAEAMRDLGA 215


>gi|331646167|ref|ZP_08347270.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M605]
 gi|331044919|gb|EGI17046.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M605]
          Length = 255

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +++  R  +    G     G        
Sbjct: 38  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKELVTYRHFMNASGGGVTASGGEAILQAE 95

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 96  FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 131

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 132 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 184

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 185 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 244

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 245 ILEQYGHKV 253


>gi|269139528|ref|YP_003296229.1| pyruvate-formate lyase-activating enzyme [Edwardsiella tarda
           EIB202]
 gi|267985189|gb|ACY85018.1| pyruvate-formate lyase-activating enzyme [Edwardsiella tarda
           EIB202]
 gi|304559417|gb|ADM42081.1| Pyruvate formate-lyase activating enzyme [Edwardsiella tarda
           FL6-60]
          Length = 246

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 77/245 (31%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++   +  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKDTVTYRHFMNASGGGVTASGGEAMLQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +    D+ G              + P I  + +    
Sbjct: 87  FVRDWFRACQAEG----------IHTCLDTNGF----------VRRYDPVIDELLDVTD- 125

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++D+   LV ++        ++ CR Y    N  +    YV++ G +D   
Sbjct: 126 LVMLDLKQMNDDIHKNLVGVSNH----RTLEFCR-YLAKRNQ-KTWIRYVVVPGWSDDEA 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
            A  L +  K +    KI L+P++     ++                ++ +      +  
Sbjct: 180 SARLLGEFTKDMKNIEKIELLPYHELGKHKWEAMGETYQLGDVKPPSREIMERVKGILTE 239

Query: 344 SGYSS 348
            G+  
Sbjct: 240 YGHKV 244


>gi|281423385|ref|ZP_06254298.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris F0302]
 gi|281402721|gb|EFB33552.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris F0302]
          Length = 261

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 83/241 (34%), Gaps = 47/241 (19%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C FC+   T  Q   R +TA+E+L Q    RS  G+  G                
Sbjct: 45  GCPMRCLFCHNPDTWKQDKTRPMTADELLNQAEKYRSYWGEKGG---------------- 88

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
             I + G GE L   D + +    A     +  L  S +  T   + F     R+ +   
Sbjct: 89  --ITVSG-GEALLQIDFLIELFEKAHARSINTCLDTSAQPFTRKDTWFTK-FERLMKATD 144

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             + + +  +  D    L   +    L+     C  Y      + +   +V++  + D+ 
Sbjct: 145 -TVLLDIKHIREDEHCKLTKFSNSNILD-----CARYLS-DIQKPVWIRHVLIPKLTDND 197

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIK 342
                L   LK +    +I+++P++     +Y                Q+ I   +  ++
Sbjct: 198 AYLHELAAFLKTLHNIERIDILPYHTLGTYKYEELHIDYPLKGIEPPTQERIDNANRIME 257

Query: 343 R 343
            
Sbjct: 258 S 258


>gi|227499463|ref|ZP_03929574.1| radical SAM domain protein [Anaerococcus tetradius ATCC 35098]
 gi|227218525|gb|EEI83768.1| radical SAM domain protein [Anaerococcus tetradius ATCC 35098]
          Length = 460

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 71/196 (36%), Gaps = 22/196 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L+C +C+    K       + I+                  I+ ++  S
Sbjct: 96  ALCLNVAHTCNLSCEYCFAKGGKYSG---PDAIMS----------KEIARSAIDFLLENS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231
                 +I   G GEPL NFD VK +++ A             TL+T+G +     I  +
Sbjct: 143 GSHYNLDIDFFG-GEPLLNFDVVKDTVAYAKSKEEEYKKHFNFTLTTNGLLLDDEVIDYL 201

Query: 232 GEEIG-VMLAISLHAV-SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
            E +  V+L++       +  R  L   N K   + ++   +++      +         
Sbjct: 202 NENMKNVVLSLDGRKEKHDQFRKTL---NGKGSYDAVVPKFQNFVKKRGDKEYYMRGTFT 258

Query: 290 KGINDSPRDALNLIKI 305
               D  +D  N I +
Sbjct: 259 ANNLDFTKDLQNYIDL 274


>gi|308050261|ref|YP_003913827.1| pyruvate formate-lyase activating enzyme [Ferrimonas balearica DSM
           9799]
 gi|307632451|gb|ADN76753.1| pyruvate formate-lyase activating enzyme [Ferrimonas balearica DSM
           9799]
          Length = 246

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 78/249 (31%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              +T  +++ Q++  R       G              
Sbjct: 29  GCLMRCQYCHNRDTWDLEGGKE--VTVPQLMEQLVSYRHFFEASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   D VK      +             L T+G +    P +  + +
Sbjct: 74  -----VTASGGEAVLQMDFVK---EWFTACKAEGI---HTCLDTNGLIRKYTPVVDEMLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + +  + + +   LV ++ K PLE      +        ++    YV++ G  
Sbjct: 123 VTD-LVMLDIKQMDDSIHQNLVGVSNKRPLEFAQHLAKR------GQKTWIRYVIVPGFT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L + L  +    K+ ++P++     ++                ++ +     
Sbjct: 176 DDDASAEKLAEFLAPMKNVEKVEMLPYHELGKHKWEALGETYPLDGVKPPPKETMERLKA 235

Query: 340 CIKRSGYSS 348
                G ++
Sbjct: 236 IFVAHGLNA 244


>gi|209544748|ref|YP_002276977.1| Radical SAM domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532425|gb|ACI52362.1| Radical SAM domain protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 371

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 16/143 (11%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+ +     L + L A +  +R  ++P      ++  +DA      +    ++   Y+
Sbjct: 223 FQRLRDAGADTLGMHLEAATQRVRERIMPGKATVSVDRYMDAFASAVPVFGRGQVN-TYI 281

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFS----EC 340
           +  G+ D+  + L L   L  +     ++PF P  G           + + +      + 
Sbjct: 282 L-AGLGDTAEEILALAGRLIALGVYPFVVPFVPISGTPLEDHAPPSAEFMASLFTPLGKM 340

Query: 341 IKRSGYSSPIRTPRGLDILAACG 363
           ++ +G +S        DI A CG
Sbjct: 341 LRTAGMTS-------SDIRAGCG 356


>gi|254478058|ref|ZP_05091442.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
 gi|214036062|gb|EEB76752.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653]
          Length = 259

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 18/140 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++    C+L C +C+  T                   R L+    G + I+ ++  S
Sbjct: 95  AMCLNVAHDCNLRCKYCFASTGDFKG-------------GRKLMDFETGRKAIDFLIKSS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231
             R+   I   G GEPL NF+ VK+ +         +    + T++T+  +     I   
Sbjct: 142 GKRRNIEIDFFG-GEPLLNFEVVKQLVEYGKQKAKENKKNIKFTITTNAVLLDDEKIEYF 200

Query: 232 GEEI-GVMLAISLHAVSNDL 250
            E    V+L++      ND 
Sbjct: 201 NENFSNVVLSLDGRKEVNDQ 220


>gi|331002131|ref|ZP_08325650.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330411225|gb|EGG90641.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 242

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 86/265 (32%), Gaps = 48/265 (18%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
           G     ET  + +       V  Q GC + C FC+          +  E   QVL A+ +
Sbjct: 5   GNIHSFETFGLVDGPGVRFVVFVQ-GCPMRCQFCHNPDT-----WSTNE--NQVLTAQEV 56

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
                     + +      +    I + G GEPL   D V +   I  ++          
Sbjct: 57  F--------EKAIRYRPYWKDHGGITVSG-GEPLLQIDFVTELFKICKEN------GVNT 101

Query: 218 TLSTSGFV-----PNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            L T+G         + +    +    L +      N+ R+ ++   +   +  +     
Sbjct: 102 CLDTAGGPFRKDTKFLKKFKTLMEYTDLIMLDIKEINNKRHEIITGMKNDHILEMAKTMD 161

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN-------PWP 322
                   +++   +V++   +D   D + L + + G+    K+ ++P++          
Sbjct: 162 EM-----GKKMWIRHVLVPERSDYDEDLIKLREFISGLKNVEKVEVLPYHTLGRHKWDNL 216

Query: 323 GCEYL-----CSDQKDIVTFSECIK 342
           G EY          + +   +  + 
Sbjct: 217 GIEYKLDGIAPPTAQRVENANRILN 241


>gi|218546601|gb|ACK98947.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
           masoucida]
 gi|218546604|gb|ACK98949.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
           salmonicida]
 gi|218546606|gb|ACK98950.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
           salmonicida]
 gi|218546611|gb|ACK98953.1| predicted Fe-S-cluster redox enzyme [Aeromonas caviae]
          Length = 41

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 351 RTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
           R  RG DI AACGQL      R  +  +  MQ  G
Sbjct: 1   RKTRGDDIDAACGQLVGEVIDRTKRTMKNRMQQDG 35


>gi|289643390|ref|ZP_06475511.1| nitrogenase cofactor biosynthesis protein NifB [Frankia symbiont of
           Datisca glomerata]
 gi|289506788|gb|EFD27766.1| nitrogenase cofactor biosynthesis protein NifB [Frankia symbiont of
           Datisca glomerata]
          Length = 558

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 79/246 (32%), Gaps = 52/246 (21%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C++C                      A                 +  V R  S I
Sbjct: 97  GCNIQCNYCNRK----------------FDCANESRPGVTSKLLTPEQALAKVKRVASEI 140

Query: 183 VMM------GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEE 234
             M      G GEPL N     +++ + +          ++ +ST+G   V ++ R+ + 
Sbjct: 141 KQMSVLGVAGPGEPLANAGRTFRTMELVARE----CPDIKLCVSTNGLTLVDHVDRIADL 196

Query: 235 IGVMLAISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRI 282
               + I+++ +  ++   + P               K  +E  ++              
Sbjct: 197 GIDHVTITINMIDPEVGERIYPWVAFRGKRHTGREASKILVERQLEGLAALTER--GILC 254

Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPG-------CEYLCSDQKDI 334
               VM+ G+ND     + + + ++G+ A + N++P    P                +++
Sbjct: 255 KVNSVMIPGVND--EHLVEVSRTVRGMGAFLHNVMPLVSAPEHGTHYGLTGQRGPTPQEL 312

Query: 335 VTFSEC 340
               + 
Sbjct: 313 KALQDR 318


>gi|27365428|ref|NP_760956.1| pyruvate formate lyase-activating enzyme 1 [Vibrio vulnificus
           CMCP6]
 gi|37680529|ref|NP_935138.1| pyruvate formate lyase-activating enzyme 1 [Vibrio vulnificus
           YJ016]
 gi|320155814|ref|YP_004188193.1| pyruvate formate-lyase activating enzyme [Vibrio vulnificus
           MO6-24/O]
 gi|27361575|gb|AAO10483.1| pyruvate formate-lyase 1-activating enzyme [Vibrio vulnificus
           CMCP6]
 gi|37199277|dbj|BAC95109.1| pyruvate-formate lyase-activating enzyme [Vibrio vulnificus YJ016]
 gi|319931126|gb|ADV85990.1| pyruvate formate-lyase activating enzyme [Vibrio vulnificus
           MO6-24/O]
          Length = 246

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 76/250 (30%), Gaps = 58/250 (23%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EEI+ +    R  +    G     G        
Sbjct: 29  GCLMRCMYCHNRDTWDTHDGKE--VTVEEIIKEAKSYRHFMNASGGGITCSGGEAMLQPE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL-----STSGFVPNIARVG 232
            + ++      E           +    D+ G    K    +     +T   + +I  + 
Sbjct: 87  FVRDLFRAAHAEG----------IHTCLDTNGY-IRKHTDVVDEVLEATDLVMLDIKHMK 135

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           +EI                + +   NR+      +D  R+   +   +     YV++ G 
Sbjct: 136 DEIHH--------------DFIGVSNRR-----TLDFARYLHKI--GQTTWIRYVVVPGY 174

Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFS 338
            D P  A  L + +K +    K+ L+P++     ++                ++ +    
Sbjct: 175 TDDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYPLEGVNPPPKETMDNIV 234

Query: 339 ECIKRSGYSS 348
             + +   + 
Sbjct: 235 SILSQYHSNV 244


>gi|89072729|ref|ZP_01159294.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium
           sp. SKA34]
 gi|89051549|gb|EAR57003.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium
           sp. SKA34]
          Length = 246

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 88/248 (35%), Gaps = 54/248 (21%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +       R  T EE++ +    R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGG--REATVEELMHEAKSYRHFMNSSGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
                V    GE +   + V+     A+ + G+        L T+G++     V +E + 
Sbjct: 74  -----VTASGGEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVVDEVLD 122

Query: 237 VM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               + + L  + +D+ + LV      P + ++D  R+       ++    YV++ G  D
Sbjct: 123 ATDLVMLDLKQIDDDIHHNLV----GVPNKRVLDFARYL--HKRGQKTWIRYVVVPGYTD 176

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSEC 340
             R A  L + +K +    KI L+P++     ++                ++ + T  E 
Sbjct: 177 DERSAHLLGEFIKDMDNIEKIELLPYHQLGEHKWEAMGFEYQLKGVKPPKKETMETIKEI 236

Query: 341 IKRSGYSS 348
           I   G+  
Sbjct: 237 IASYGHKV 244


>gi|160934052|ref|ZP_02081439.1| hypothetical protein CLOLEP_02915 [Clostridium leptum DSM 753]
 gi|156866725|gb|EDO60097.1| hypothetical protein CLOLEP_02915 [Clostridium leptum DSM 753]
          Length = 245

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 78/240 (32%), Gaps = 44/240 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C FC+                      ++  G     ED    ++       S  
Sbjct: 33  GCPLRCGFCHNPD-----------------TWQACTGKAVTPEDAFEDILKYKNFISSGG 75

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEEIGVMLAI 241
           V +  GEPL   +   ++L     S G+        + T+G +P +  R   +   +L +
Sbjct: 76  VTLSGGEPLLQPE-FCQALISLCHSAGI-----HCAVDTAGSIPLDFCRQAVDAADLLLL 129

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
            + A+   L   L   + +  L     A   Y   +    +   +V++ G+        N
Sbjct: 130 DIKALDPTLCQELTGQDNQNAL-----ALLEYCEAAQK-AVWIRHVLVPGLTLRRELLEN 183

Query: 302 LIKILKGIPAK--INLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSGYS 347
           L + L G      + L+PF+     ++                + ++    +  +  G S
Sbjct: 184 LAEFLSGFSCVEQVELLPFHKMGEYKWEALNLRSPLSGTREPTKAEVAAAKKIFQSRGLS 243


>gi|224367545|ref|YP_002601708.1| PflC1 [Desulfobacterium autotrophicum HRM2]
 gi|223690261|gb|ACN13544.1| PflC1 [Desulfobacterium autotrophicum HRM2]
          Length = 302

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 65/184 (35%), Gaps = 29/184 (15%)

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN--IARVGEEIGVMLA 240
           V    GEPL  +  V++   +             I + TSG V    I  +   + + L 
Sbjct: 130 VTFSGGEPLFQWQFVRECSKLLRKR------GVHIAMETSGCVKEDIIKEIAPHVDLFLY 183

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
              H    + R       R   +   ++           + I    V++ G+NDSP    
Sbjct: 184 DLKHIDPVEHRK--YCGIRNESILDNLELLSRM-----GKEIIIRMVVIPGVNDSPGTVE 236

Query: 301 NLIKILKGIPA--KINLIP--------FNPWPG----CEYLCSDQKDIVTFSECIKRSGY 346
            L + LKGI     I+L+P        +N         ++   + +++   +E  +  G+
Sbjct: 237 RLCEFLKGIIGIRYISLLPLHKSATEKYNRLDKEFLLSDFEVPNDEEVKAIAEIFQSKGF 296

Query: 347 SSPI 350
           +  I
Sbjct: 297 TVQI 300


>gi|308270210|emb|CBX26822.1| hypothetical protein N47_A08510 [uncultured Desulfobacterium sp.]
          Length = 424

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 71/195 (36%), Gaps = 35/195 (17%)

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEE 234
           +I+   + G G+P  N +   ++L + +     + L  +   +     G +P I  +   
Sbjct: 79  RITVAGIAGPGDPFANPEETMETLRLINKQFPDIILCLATNGM-----GLLPYIDELSGL 133

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRI 282
               + I+++A+   +   +    R               +E  +++ +     +    +
Sbjct: 134 NLTHVTITVNALDPVIGGKIYSWARDGKVLYRKEKAAEKLIERQLESIKKLKEKN--ITV 191

Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYLCSDQKDIVTFSECI 341
               +++ GIND     + + K ++ +   I N I   P PG E+     + I       
Sbjct: 192 KINSIIVPGIND--EHIIEIAKEMRHLKVDIMNAIAMFPSPGSEF-----ETIKE----- 239

Query: 342 KRSGYSSPIRTPRGL 356
             +G  S IR   G 
Sbjct: 240 PGNGLVSRIREEAGK 254


>gi|238920354|ref|YP_002933869.1| pyruvate formate lyase-activating enzyme 1 [Edwardsiella ictaluri
           93-146]
 gi|238869923|gb|ACR69634.1| pyruvate formate-lyase 1-activating enzyme, putative [Edwardsiella
           ictaluri 93-146]
          Length = 246

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 77/245 (31%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++   +  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKDTVTYRHFMNASGGGVTASGGEAMLQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +    D+ G              + P I  + +    
Sbjct: 87  FVRDWFRACQAEG----------IHTCLDTNGF----------VRRYDPVIDELLDVTD- 125

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++D+   LV ++        ++ CR Y    N  +    YV++ G +D   
Sbjct: 126 LVMLDLKQMNDDIHKNLVGVSNH----RTLEFCR-YLAKRNQ-KTWIRYVVVPGWSDDEA 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
            A  L +  K +    KI L+P++     ++                ++ +      +  
Sbjct: 180 SARLLGEFTKDMKNIEKIELLPYHELGKHKWEAMGETYQLGDVKPPSREIMEKVKGILTE 239

Query: 344 SGYSS 348
            G+  
Sbjct: 240 YGHKV 244


>gi|85058965|ref|YP_454667.1| pyruvate formate lyase-activating enzyme 1 [Sodalis glossinidius
           str. 'morsitans']
 gi|84779485|dbj|BAE74262.1| pyruvate formate-lyase 1 activating enzyme [Sodalis glossinidius
           str. 'morsitans']
          Length = 246

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 86/249 (34%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +       R +T EEI+ +V+  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGG--REITVEEIMREVISYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A  + G++       + T+GFV    P I  + E
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHAEGIN-----TCVDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + +  +++D+   LV ++    L+        Y    N  R    YV++ G +
Sbjct: 123 VTD-LVMLDIKEMNDDIHQNLVGVSNHRTLD-----FARYLAKINK-RTWLRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D  +    L +  + +    KI L+P++     ++                   +    +
Sbjct: 176 DDDKSVHMLGEFTQHMSNIEKIELLPYHELGKHKWIAMGEEYRLEGVKPPTTASMDHIRD 235

Query: 340 CIKRSGYSS 348
            +   G+  
Sbjct: 236 ILAGYGHKV 244


>gi|162149506|ref|YP_001603967.1| hypothetical protein GDI_3744 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161788083|emb|CAP57687.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 371

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 16/143 (11%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+ +     L + L A +  +R  ++P      ++  +DA      +    ++   Y+
Sbjct: 223 FQRLRDVGADTLGMHLEAATQRVRERIMPGKATVSVDRYMDAFASAVPVFGRGQVN-TYI 281

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFS----EC 340
           +  G+ D+  + L L   L  +     ++PF P  G           + + +      + 
Sbjct: 282 L-AGLGDTAEEILALAGRLIALGVYPFVVPFVPISGTPLEDHAPPSAEFMASLFTPLGKM 340

Query: 341 IKRSGYSSPIRTPRGLDILAACG 363
           ++ +G +S        DI A CG
Sbjct: 341 LRTAGMTS-------SDIRAGCG 356


>gi|298530635|ref|ZP_07018037.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510009|gb|EFI33913.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 311

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 81/226 (35%), Gaps = 27/226 (11%)

Query: 124 CSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           CS  C +C    T  + +VR              R          ++E  +  + G K  
Sbjct: 28  CSFDCLYCESGPTTQKTIVR--------------REYADSGIILAELEKWLNDNQGDKPD 73

Query: 181 NIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           +I + G GEP  N     + + +      + L+     +T S+    P + +      V+
Sbjct: 74  HITLGGEGEPCLNLQLGKIIRDIKKIEPDIPLAV----LTNSSLLGDPQVRKELRNADVV 129

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           L  SL  +  +    L        ++ +      +     + R+  E +++ GINDS  +
Sbjct: 130 LP-SLDTLVQEEFIRLNRPCAGLDIQEIARGLEAFC-KEFSGRVLLEILLVPGINDSREN 187

Query: 299 ALNLIKILKGIPA-KINLIPFN-PWPGCEYLCSDQKDIVTFSECIK 342
              +   LK +   +++L   + P    +    D + +  + + + 
Sbjct: 188 MEKITVFLKNLDHERVDLSVMSRPGAHMQLKTPDHETLHRWQKALH 233


>gi|90407167|ref|ZP_01215355.1| Act [Psychromonas sp. CNPT3]
 gi|90311743|gb|EAS39840.1| Act [Psychromonas sp. CNPT3]
          Length = 246

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 89/271 (32%), Gaps = 55/271 (20%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC-----YTGTQKLVRNLTAEEILLQV 151
           +G    IET    +       +  Q GC + C +C     +         ++ EE++ ++
Sbjct: 4   MGHVHSIETCGAVDGPGIRFIIFLQ-GCLMRCKYCHNRDTWALDGGKE--MSVEELMTEI 60

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
           +  R+ +    G   I G         +                 + ++  +     G+ 
Sbjct: 61  VQYRNYMQASGGGITISGGEAMLQPEFV---------------KAMFEACRL----EGI- 100

Query: 212 FSKRRITLSTSGFVPNIA---RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
                  L T+GFV  I    +   E+  ++ + +  + +     L  ++ KY L     
Sbjct: 101 ----HTCLDTNGFVRRIDDTTKAVLELSDLVLLDIKQIDDHKHIDLTHVSNKYTL----- 151

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY 326
               Y    N   +   YV++ G  D+  DA  L K +  +    KI L+P++     ++
Sbjct: 152 TFAKYLAEMNQ-PVYLRYVIVPGYTDALEDAHALGKFIAPMKNIEKIELLPYHDLGRHKW 210

Query: 327 ------------LCSDQKDIVTFSECIKRSG 345
                           ++ + T    +    
Sbjct: 211 IAMGESYPLEGVDSPSKQTMDTIKNILLEYN 241


>gi|319775951|ref|YP_004138439.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae
           F3047]
 gi|329123815|ref|ZP_08252373.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus aegyptius
           ATCC 11116]
 gi|317450542|emb|CBY86759.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae
           F3047]
 gi|327469302|gb|EGF14773.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus aegyptius
           ATCC 11116]
          Length = 246

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 88/246 (35%), Gaps = 50/246 (20%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T   +  R ++ EE++ +V+  R  +    G     G         +
Sbjct: 29  GCLMRCKYCHNRDTWDLEGGREISVEELMKEVVSYRHFMNATGGGVTASGGEAVLQAEFV 88

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
            +                 ++  +     G++       L T+GFV +   + +E+  + 
Sbjct: 89  RD---------------WFRACKV----EGIN-----TCLDTNGFVRHYDHIIDELLDVT 124

Query: 240 AISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            + L  +   ++ +   L+ +  K  LE        Y    N       YV++ G  DS 
Sbjct: 125 DLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQH-TWIRYVVVPGYTDSD 178

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
            D   L + ++G+    K+ L+P++     ++                ++ +      ++
Sbjct: 179 HDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTLGLDYELENVLPPTKESLEHIKTILE 238

Query: 343 RSGYSS 348
             G++ 
Sbjct: 239 GYGHTV 244


>gi|257452751|ref|ZP_05618050.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 3_1_5R]
 gi|257466612|ref|ZP_05630923.1| pyruvate formate-lyase activating enzyme [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917767|ref|ZP_07914007.1| pyruvate formate-lyase activating enzyme [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317059292|ref|ZP_07923777.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 3_1_5R]
 gi|313684968|gb|EFS21803.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 3_1_5R]
 gi|313691642|gb|EFS28477.1| pyruvate formate-lyase activating enzyme [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 241

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 81/242 (33%), Gaps = 46/242 (19%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N+ A               ++    +     +  V   ++  
Sbjct: 27  GCPLRCRYCH--------NVDAW---------NLQHPNYIYTSEEILEEVNRVKVFLTGG 69

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
           + +  GEPL   D VK+         G+        L TSG++    +  V EE  ++L 
Sbjct: 70  ITISGGEPLLQADFVKEFFQ-LCHKNGI-----HTALDTSGYIFTEKVKEVLEETDLVL- 122

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + L  + ++    L  +N   P    ++    Y   +        YV++ G  D   D  
Sbjct: 123 LDLKHIDSEKYYDLTSVNLS-PTLEFLE----YLSKTQKD-TWIRYVLVPGYTDDVEDLK 176

Query: 301 NLIKIL-KGIPAK-INLIPFNPWPGCEYLC-----------SDQKDIVTFS-ECIKRSGY 346
              + + K    K ++++PF+     ++                K+ V F+       G 
Sbjct: 177 RWAEYVSKYSNVKRVDILPFHQMAIYKWEKERKNYTLRDVLPPTKEAVRFAENIFLSYGL 236

Query: 347 SS 348
             
Sbjct: 237 PV 238


>gi|47716959|gb|AAT37646.1| NifN-B [Clostridium pasteurianum]
          Length = 929

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 86/221 (38%), Gaps = 37/221 (16%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+++C++C         N +   +  QVL         P     +   + +  + ++ + 
Sbjct: 522 CNISCNYCNRKYD--CTNESRPGVTSQVL--------SPEGALAKFKAVKAKFKNLTVLG 571

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-PNIARVGEEIGV-MLAI 241
           + G G+ L NFD VKKS+ +               +ST+G + P  A    E+GV  + +
Sbjct: 572 IAGPGDALANFDVVKKSIELIKKED----PNITFCISTNGLMLPFFANQLIELGVSHVTV 627

Query: 242 SLHAVSNDLRNILV----PINRKYPLEMLIDACRH-------YPGLSNARRITFEYVMLK 290
           ++++V   +   +      I +KY  E   D   H       Y   S         VM+K
Sbjct: 628 TMNSVDKKIGAKIYREVNYIGKKYTGEEAADILMHNQLSGLKYLS-SKGVVCKVNIVMIK 686

Query: 291 GINDSPRDALNLIKILKGIPAK----INLIPFNPWPGCEYL 327
           G+ND+      ++K  K   A     + LIP     G  + 
Sbjct: 687 GVNDT--HIPEVVKKAKECGAFMTNIMKLIPV---EGTAFE 722


>gi|212640612|ref|YP_002317132.1| Pyruvate-formate lyase-activating enzyme [Anoxybacillus
           flavithermus WK1]
 gi|212562092|gb|ACJ35147.1| Pyruvate-formate lyase-activating enzyme [Anoxybacillus
           flavithermus WK1]
          Length = 242

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 75/241 (31%), Gaps = 50/241 (20%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC L C +C+   T      + ++ +EI+                  +  M     G  +
Sbjct: 27  GCLLRCQYCHNADTWEIGKGKQMSVDEIID------------DAQTYLPFMQASGGGITV 74

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF-----SKRRITLSTSGFVPNIARVGEE 234
           S       GEPL   D +   + +      L       S      + + F   + ++ + 
Sbjct: 75  S------SGEPLLQIDFL---IELFRRCKQLGIHTTIDSSGGCYTTEASFQRKLDKLLQY 125

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             ++L + +  +       L         E ++   R     +    +   +V++  + D
Sbjct: 126 TDLIL-LDVKHIDEKKHRKLTGKTN----EHILAFARLLSERN--VPVWIRHVLVPTVTD 178

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFSEC 340
              D   L   ++ +    KI ++P++     ++                ++ +    + 
Sbjct: 179 DEEDLHRLADFIRTLRNVEKIEVLPYHQLGVYKWKALGLTYPLEGIPTPSEESVQKAKQI 238

Query: 341 I 341
           +
Sbjct: 239 L 239


>gi|330992920|ref|ZP_08316863.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter
           sp. SXCC-1]
 gi|329760074|gb|EGG76575.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter
           sp. SXCC-1]
          Length = 364

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+ +     L + L A +  +R  ++P      ++  +DA      +    ++   Y+
Sbjct: 219 FQRLRDAGADSLGMHLEAATQAVREKIMPGKATVSVDRYMDAFASAVPIFGRGQVN-TYI 277

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSEC 340
           +  G+ DS  D L L + L  +     ++PF P  G             + +        
Sbjct: 278 L-AGLGDSAADILALAERLIALGVYPFVVPFVPISGTPLENHAPPSADFMKSVLAPLGRM 336

Query: 341 IKRSGYSSPIRTPRGLDILAACG 363
           ++ +   S        DI A CG
Sbjct: 337 LREANMKST-------DIRAGCG 352


>gi|303229542|ref|ZP_07316330.1| six-Cys-in-45 modification radical SAM protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303231100|ref|ZP_07317840.1| six-Cys-in-45 modification radical SAM protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514231|gb|EFL56233.1| six-Cys-in-45 modification radical SAM protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515667|gb|EFL57621.1| six-Cys-in-45 modification radical SAM protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 469

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 78/206 (37%), Gaps = 42/206 (20%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQ---KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
            LC++    C+L C +C+        + R                L+        ++ ++
Sbjct: 98  ALCLNIAHDCNLACKYCFASQGDYGGVKR---------------ELMSFDVAKRAVDFLI 142

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
             S  R+   I   G GEPL N+D VK+++              ++TL+T+G + +  ++
Sbjct: 143 QMSGTRQHCEIDFFG-GEPLLNWDVVKQTVEYIEQEAPKHNKIFKLTLTTNGMLLSQEKI 201

Query: 232 --GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
               E  + L +SL     D R            E + +A R    ++ +   ++EY+  
Sbjct: 202 DYVNEHKMSLVLSL-----DGR------------EDVHNAMR---PVAGSGANSYEYIAK 241

Query: 290 KGINDSPRDALNLIKILKGIPAKINL 315
             +N   +    L   ++G     NL
Sbjct: 242 NLVNAVKQR-HGLEYYVRGTYTHKNL 266


>gi|332296006|ref|YP_004437929.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796]
 gi|332179109|gb|AEE14798.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 306

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 73/218 (33%), Gaps = 34/218 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C +C  G    + N                    P   + +         K   + 
Sbjct: 27  CNFNCVYCEVGKTTNLIN-------------DRRSFYNPEEIERDFRENYKKMGKFDFVT 73

Query: 184 MMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--L 239
             G GEP  N D   + + +   +          +I + T+G + N+  V E++     +
Sbjct: 74  FSGSGEPTLNKDIGRLVRYVKSFN--------LAKIAVLTNGSLLNLTDVQEDLMDADVV 125

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
             SL A + +    +   +    ++ +I+  + +        I  E + +K  NDS +D 
Sbjct: 126 IPSLDAANQESFKKINRAHGSLKIDEIINGIKEFRD-KFRGEIWLESLFVKDFNDSKKDI 184

Query: 300 LNLIKILKGIPAKINLI-PFNPWPGCEYLCSDQKDIVT 336
            +L + +K       LI P     G       ++ I  
Sbjct: 185 EDLKRAVK-------LINPHKFQIGTIDRPPAEESIKK 215


>gi|238763316|ref|ZP_04624280.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia kristensenii
           ATCC 33638]
 gi|238698415|gb|EEP91168.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia kristensenii
           ATCC 33638]
          Length = 246

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ + +  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELVKEAVTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A    G+        L T+GFV    P I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHEEGI-----HTCLDTNGFVRRYDPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  + + +   LV ++    LE        Y    N  +    YV++ G +
Sbjct: 123 ATD-LVMLDLKQMDDSVHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D  + A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 176 DDDKSAHMLGEFTQNMTNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPTKEIMDRVKG 235

Query: 340 CIKRSGYSS 348
            ++  G+  
Sbjct: 236 ILESYGHKV 244


>gi|134300647|ref|YP_001114143.1| radical SAM domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134053347|gb|ABO51318.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1]
          Length = 299

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 93/229 (40%), Gaps = 35/229 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C++C         N +   +  QV+         P     + +V+      +S + 
Sbjct: 45  CNIGCNYCNRKYD--CTNESRPGVTSQVIT--------PILAQQKFIVVKEKFPNLSVVG 94

Query: 184 MMGMGEPLCNFDNVKKSLSIA---SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           + G G+ L N+++ ++++      +  M    S   + L    + P I ++G +    + 
Sbjct: 95  IAGPGDALANWESTREAIERIKASNPEMIFCLSTNGLML--PHYAPEIVKLGIK---HVT 149

Query: 241 ISLHAVSNDLRNILV----PINRKYP--------LEMLIDACRHYPGLSNARRITFEYVM 288
           ++++ V+ +    +        +KY         L+  +   ++  G     ++    VM
Sbjct: 150 VTMNTVNPETGAKIYQFVHYQGKKYTGIEGAKILLQNQLTGIQYLAGQGVLVKVNI--VM 207

Query: 289 LKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYLCSDQKDIVT 336
           +KGIND  ++   ++K +K + A + N++P  P  G  +      ++  
Sbjct: 208 IKGIND--QEISEVVKKVKQLGAFMSNIMPLIPVEGTVFAKLPSTNMKE 254


>gi|317047551|ref|YP_004115199.1| pyruvate formate-lyase activating enzyme [Pantoea sp. At-9b]
 gi|316949168|gb|ADU68643.1| pyruvate formate-lyase activating enzyme [Pantoea sp. At-9b]
          Length = 246

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 76/245 (31%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++  VL  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKDVLSYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +    D+ G              + P I  + E    
Sbjct: 87  FVRDWFRACRAEG----------IHTCLDTNGF----------VRRYDPVIDELLEVTD- 125

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++D+  ILV ++        +D  R+        R    YV++ G +D   
Sbjct: 126 LVMLDLKQINDDIHQILVGVSNH----RTMDFARYLQKK--GTRTWIRYVVVPGYSDDDD 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
               L +  + +    KI L+P++     ++                ++ +      +  
Sbjct: 180 SVHRLGEFTQDMDNIEKIELLPYHELGKHKWIAMGEEYKLEGVKPPTKETMERVKNILSG 239

Query: 344 SGYSS 348
            G+  
Sbjct: 240 YGHQV 244


>gi|333008877|gb|EGK28337.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri
           K-272]
 gi|333020187|gb|EGK39457.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri
           K-227]
          Length = 246

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + E
Sbjct: 87  FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWSRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235

Query: 340 CIKRSGYSS 348
            +++ G+  
Sbjct: 236 ILEQYGHKV 244


>gi|210620573|ref|ZP_03292121.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275]
 gi|210155287|gb|EEA86293.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275]
          Length = 298

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 56/149 (37%), Gaps = 22/149 (14%)

Query: 216 RITLSTSGFVPN--IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
            + + T+G+V       +  E+ ++L    H      R       + Y  +++++  +  
Sbjct: 156 HVAIETTGYVKKETFEELARELDLLLFDVKHY----DREKHYNGTKVYN-DLIVENLK-- 208

Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY------ 326
             + N   +     ++   NDS  DA  L K+L  + A K+ L+PF+ +   +Y      
Sbjct: 209 WAIDNGIEVLPRIPVIPDFNDSLEDAEGLAKLLVEVGAKKVQLLPFHQFGEKKYELLNRN 268

Query: 327 ------LCSDQKDIVTFSECIKRSGYSSP 349
                      +++  + +     G +  
Sbjct: 269 YKYKNKKALYPEELEEYQKIFLDKGLNCF 297


>gi|19703472|ref|NP_603034.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296328997|ref|ZP_06871504.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|19713554|gb|AAL94333.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296153890|gb|EFG94701.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 284

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 38/234 (16%)

Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           C+L C FC    T   +L R      +EIL ++                          K
Sbjct: 28  CNLNCIFCECGATKKIQLERQRFKDMDEILNEIQSVLK-------------------NIK 68

Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
              I   G GEP  + D  N+ K++       G      +I L T+  +    +V +E+ 
Sbjct: 69  PDYITFSGSGEPTLSLDLGNISKAIKEDLKYKG------KICLITNSLLLANNQVIKELE 122

Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              ++  +L+ +  D+   +V  + +  ++ +     +    +   +I  E  +L+ IND
Sbjct: 123 YIDLIVPTLNTLKQDIFEKIVRPDYRTSVDEIKKGFVNLNNSNYKGKIWIEIFILENIND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRS 344
           S  + + +   L     + + I  N         +        I    + ++ +
Sbjct: 183 SEENFIEIANFLNLENIRYDKIQLNTIDRVGAERDLKAISFDKIFKAKKILEEN 236


>gi|291037331|ref|ZP_06568295.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB
           [Gluconacetobacter xylinus NBRC 3288]
          Length = 368

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+ +     L + L A +  +R  ++P      ++  +DA      +    ++   Y+
Sbjct: 223 FQRLRDAGADSLGMHLEAATQAVREKIMPGKATVSVDRYMDAFASAVPVFGRGQVN-TYI 281

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSEC 340
           +  G+ DS  D L L + L  +     ++PF P  G             + +        
Sbjct: 282 L-AGLGDSAADILALAERLIALGVYPFVVPFVPISGTPLENHAPPSADFMKSVLAPLGRM 340

Query: 341 IKRSGYSSPIRTPRGLDILAACG 363
           ++ +   S        DI A CG
Sbjct: 341 LREANMKST-------DIRAGCG 356


>gi|319638107|ref|ZP_07992871.1| pyruvate formate-lyase 1-activating enzyme [Neisseria mucosa C102]
 gi|317400752|gb|EFV81409.1| pyruvate formate-lyase 1-activating enzyme [Neisseria mucosa C102]
          Length = 268

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 77/245 (31%), Gaps = 52/245 (21%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    +     L               + M      R     
Sbjct: 49  GCLMRCLYCH--------NRDTWD-----LHTEQAQELDVATVMKQVMTYRHYLRATGGG 95

Query: 183 VMMGMGEPLCNFDNVKK--------SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
           V    GEPL  ++ V+          +    DS G +            +   +  + + 
Sbjct: 96  VTATGGEPLLQYEFVRDWFTACREHDIHTCLDSNGYAL----------HYDSILNDLLDH 145

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              ++ + L  +  ++  +LV      P    +   R+    +   R+   YV++ G  D
Sbjct: 146 TN-LVMLDLKQIDPEIHKVLV----GIPNTKTLKFARYLTERNQPTRV--RYVVVPGYTD 198

Query: 295 SPRDALNLIKILKGIPAK--INLIPFNP-------WPGCEYL-----CSDQKDIVTFSEC 340
             R A  L + +  +     + L+P++          G EY         ++ I+   E 
Sbjct: 199 DERSAHLLGEFIGDMDNVEMVELLPYHELGAHKWALCGDEYKLTGVHPPPKETILKIKEI 258

Query: 341 IKRSG 345
           ++  G
Sbjct: 259 LESYG 263


>gi|53803297|ref|YP_114978.1| radical SAM domain-containing protein [Methylococcus capsulatus
           str. Bath]
 gi|53757058|gb|AAU91349.1| radical SAM domain protein [Methylococcus capsulatus str. Bath]
          Length = 365

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 82/253 (32%), Gaps = 39/253 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG---DFPGCEDIEGMVIPSVGRKIS 180
           C+  C +C      L R       +  VLL+R L G   D    +  E   +P   R+I 
Sbjct: 124 CNWRCIYCQVPD--LRRGGAPA--VDVVLLSRELEGLLADVLEGDFFERYGVPDDQRRIR 179

Query: 181 NIVMMGMGEP--LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG------ 232
           +I + G GEP     F+ V  ++   ++  GL   +    L T+G    I R+       
Sbjct: 180 DIAISGNGEPTGAAEFEQVIAAIEKVTERFGLP-GRIGFVLITNG--SGIERLPVQQGLR 236

Query: 233 --EEIGVMLAISLHAVSND-LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
               +G  +   L + +   +R I         +   I AC     L      T  + + 
Sbjct: 237 HWAALGGEVWFKLDSATEAGIRRINNVHLEPQTVRRRIAAC---AKLCPTWLQTCLFALD 293

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD------------QKDIVTF 337
              + +P     L   L G+    + IP                          + +  F
Sbjct: 294 GAPSSAPEQEAYLA-FLSGLVC--DGIPVRGVLLYGLARPSLQPESSRLARLPAEALEAF 350

Query: 338 SECIKRSGYSSPI 350
              I+  G +  I
Sbjct: 351 GAAIRERGLAVRI 363


>gi|225023347|ref|ZP_03712539.1| hypothetical protein EIKCOROL_00205 [Eikenella corrodens ATCC
           23834]
 gi|224943825|gb|EEG25034.1| hypothetical protein EIKCOROL_00205 [Eikenella corrodens ATCC
           23834]
          Length = 271

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 90/279 (32%), Gaps = 51/279 (18%)

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR------NLTAEE 146
           P   IG    +ET    +       +  Q GC + C +C+       R      + T  +
Sbjct: 23  PYEGIGYVHSVETGGAVDGPGLRFVLFMQ-GCLMRCLYCH-NRDTWDRHSEKELHFTVPQ 80

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK-SLSIAS 205
           ++ QVL  +       G     G                   EPL  +  ++   ++   
Sbjct: 81  LMQQVLSYKHYFRATGGGVTATGG------------------EPLLQYQFIRDWFVACRE 122

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
             +          L    +   +  + +    ++ + L  +  ++  +LV      P   
Sbjct: 123 HDIHTCLDTNGYAL---HYDSAMEELLDNTN-LVMLDLKQIDPEIHKVLV----GIPNTK 174

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPG 323
           ++   R+        RI   YV++ G  D  R A  L + +  +P    + L+P++    
Sbjct: 175 VLHFARYLADRGQPTRI--RYVVVPGYTDDDRSAHLLGEFIADMPNADTVELLPYHELGA 232

Query: 324 CEYL------------CSDQKDIVTFSECIKRSGYSSPI 350
            ++                ++ ++   E I+  G  + +
Sbjct: 233 HKWELCGDEYKLKGVSPPPKETMLRIKEIIESYGKQTIV 271


>gi|189347159|ref|YP_001943688.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
 gi|189341306|gb|ACD90709.1| Radical SAM domain protein [Chlorobium limicola DSM 245]
          Length = 321

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 76/225 (33%), Gaps = 30/225 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C +C  G  K               +        P     E       G  I  I 
Sbjct: 38  CTWNCVYCQIGRTK-------------HYVTERCEFYPPEEILKEIRDALQAGTHIDWIT 84

Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
            +G GE L   +   + + +   +           + + T+G + ++  V  E+    A+
Sbjct: 85  FVGSGETLLYKDIGYLIEEVKKMT--------AIPVAVITNGSLFHLEEVRRELLHADAV 136

Query: 242 --SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
             SL+A S +L   +      +  +  +D    +       ++  E ++L G+NDS    
Sbjct: 137 LPSLNAGSEELYERIDRPASGFTFKQHLDGLIQF-RQEYKGKLWVEVMLLNGLNDSDEAL 195

Query: 300 LNLI---KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
             L    K++      + ++P  P P  + +  D + I      +
Sbjct: 196 NELAAAMKLVAPDMVHL-VLPTRPAPEQQVVLPDNERIDRAVVIL 239


>gi|330836098|ref|YP_004410739.1| glycyl-radical enzyme activating protein family [Spirochaeta
           coccoides DSM 17374]
 gi|329748001|gb|AEC01357.1| glycyl-radical enzyme activating protein family [Spirochaeta
           coccoides DSM 17374]
          Length = 252

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 88/245 (35%), Gaps = 38/245 (15%)

Query: 123 GCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           GC+L C +C         VR    E +  ++     +L D    +               
Sbjct: 27  GCNLRCHWCANPESISMKVRPELEESLGGRIWKLEEVLHDVLKDKVFYDESGGG------ 80

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEEIGVM 238
             V +  GEPL   D    +L  A  + G++     + + T+  VP     +V E++ V 
Sbjct: 81  --VTLSGGEPLLQAD-FACALCDALHAHGVA-----VAIETAACVPEQTFMKVFEKLDVA 132

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
             I L   ++              +++++   R    L+ +  +     ++ G NDS  D
Sbjct: 133 -HIDLKHWNDAS----YRQGTGAGIDLVLSNIRR--ALAGSIPVFLRIPIIPGFNDSLED 185

Query: 299 ALNLIKILKGIPAK-INLIPFNPWPGCEYLCSD------------QKDIVTFSECIKRSG 345
           A     +L  + A  + L+PF+ +   +Y                 +D+  ++  +K SG
Sbjct: 186 ARQFGNVLADVGANAVQLLPFHQFGEKKYEKLALEYSMNGIAQLHDEDVQDYASVLKESG 245

Query: 346 YSSPI 350
               I
Sbjct: 246 LHVQI 250


>gi|46562239|ref|YP_009047.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46447776|gb|AAS94442.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235389|gb|ADP88242.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1]
          Length = 514

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 29/182 (15%)

Query: 184 MMGMGEPLCNFDNVKKSLSIA---SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           + G G+P+ N     ++L +       M    S   +     G  P++  +         
Sbjct: 82  IAGPGDPMANAAATLETLRLIRQRHPDMLFCLSSNGL-----GMPPHLDALAANGVTHAT 136

Query: 241 ISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
           ++++AV  D+   L                 +  LE  + A            +    ++
Sbjct: 137 LTINAVDPDISARLYTWVRDGKVVWRGRPAAELMLERQLTALTGLVQR--GIVVKVNTIL 194

Query: 289 LKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYLC---SDQKDIVTFSECIKRS 344
           + GIND       + + +  + A  +N+IP +P              + +   +  +  +
Sbjct: 195 VPGINDG--HVEQVAEKVAALGATLMNIIPLHPTHDTPLAQVAEPSPEAVGE-ARRLAGA 251

Query: 345 GY 346
             
Sbjct: 252 HI 253


>gi|291326420|ref|ZP_06124398.2| pyruvate formate-lyase 1-activating enzyme [Providencia rettgeri
           DSM 1131]
 gi|291314456|gb|EFE54909.1| pyruvate formate-lyase 1-activating enzyme [Providencia rettgeri
           DSM 1131]
          Length = 265

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 81/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +      +  +T EE++ + +  R  +    G              
Sbjct: 48  GCLMRCLYCHNRDTWDTHGGNI--VTVEELMKEAVTYRHFMNATGGG------------- 92

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+                    L T+GFV    P I  + +
Sbjct: 93  -----VTASGGEAILQAEFVRDWFRACKKEN------IHTCLDTNGFVRRYDPVIDELMD 141

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  + +++   LV ++    LE        Y    N  +    YV++ G +
Sbjct: 142 VTD-LVMLDLKQIDDEIHQKLVGVSNHRTLE-----FARYLAKRNQ-KTWVRYVVVPGWS 194

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339
           D       L +  K +    KI L+P++          G EY         ++ +     
Sbjct: 195 DDDHSVHLLGEFTKDMSNIEKIELLPYHELGKHKWETMGEEYKLDGVRPPSKEVMERVKS 254

Query: 340 CIKRSGYSS 348
            ++  G+  
Sbjct: 255 ILESYGHKV 263


>gi|294636920|ref|ZP_06715247.1| pyruvate formate-lyase 1-activating enzyme [Edwardsiella tarda ATCC
           23685]
 gi|291089873|gb|EFE22434.1| pyruvate formate-lyase 1-activating enzyme [Edwardsiella tarda ATCC
           23685]
          Length = 246

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 86/249 (34%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++   +  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKDTVTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A  + G+        L T+GFV    P +  + +
Sbjct: 74  -----VTASGGEAMLQAEFVRDWFR-ACKAEGI-----HTCLDTNGFVRRYDPVVDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++D+   LV ++        ++ CR Y    N  +    YV++ G +
Sbjct: 123 VTD-LVMLDLKQMNDDIHKNLVGVSNH----RTLEFCR-YLAKRNQ-KTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D    A  L +  K +    KI L+P++     ++                ++ +     
Sbjct: 176 DDEASARLLGEFTKDMKNIEKIELLPYHELGKHKWEAMGETYQLGDVKPPSREIMERVKG 235

Query: 340 CIKRSGYSS 348
            ++  G+  
Sbjct: 236 ILEEYGHKV 244


>gi|154493910|ref|ZP_02033230.1| hypothetical protein PARMER_03254 [Parabacteroides merdae ATCC
           43184]
 gi|154086170|gb|EDN85215.1| hypothetical protein PARMER_03254 [Parabacteroides merdae ATCC
           43184]
          Length = 240

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 67/240 (27%), Gaps = 40/240 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N    E        +         E +   V+          
Sbjct: 27  GCPLRCLYCH--------NPDTWE-------VKRETPYLLEPEALLAEVLRYKNFIAKGG 71

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V +  GEPL   + +K+         G+        L TSG++ +   +     V L + 
Sbjct: 72  VTVTGGEPLLQPEFLKEFFR-LCRENGI-----HTALDTSGYICSGKALEVLEQVDLVLL 125

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
                +     L P      L+  +              +   +V++ G+ D       L
Sbjct: 126 DIKTIDA---GLHPRLTAVKLDNTLRFLDELEKR--GIPVWIRHVIVPGLTDDDEALSKL 180

Query: 303 IKILKGIPA--KINLIPFNPWPGCEYLCS------------DQKDIVTFSECIKRSGYSS 348
            + +       K  L+P++     +Y                 + +        + G + 
Sbjct: 181 AEYISSYNVVQKAELLPYHTMGAYKYEAQGLDYKLKGVEPLSAERLANAKAIFMKHGVTV 240


>gi|194336098|ref|YP_002017892.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308575|gb|ACF43275.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 311

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 75/235 (31%), Gaps = 35/235 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C +C        R            +              E        + +  I 
Sbjct: 27  CTWNCVYC---QLGKTRK----------FVTERQEFFAREEILEEIREALERHKGLDWIT 73

Query: 184 MMGMGEPLCNFDN---VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
            +G GE +  +     +   +   +D          + + T+G +  +  V EE+    A
Sbjct: 74  FVGSGETML-YKGIGWLIAEVKKLTD--------IPVAVITNGSLLYLEEVREELLQADA 124

Query: 241 I--SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           +  SL+A S  L N +V           ++    +       R+  E ++L GINDS   
Sbjct: 125 VLPSLNAGSEALHNQIVRPAAGLTFRQHLEGLVAF-RHEYQGRLWIEVMLLGGINDSDEA 183

Query: 299 ALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
             +L  +LK I      + ++P  P P  E      + I      +      + +
Sbjct: 184 LRDLAIVLKEINPDMVHL-VLPTRPAPEQEVHLPSDERIERAIAILSE---VTTV 234


>gi|157867036|ref|XP_001682073.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68125524|emb|CAJ03385.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 416

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 80/236 (33%), Gaps = 32/236 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEE---ILLQ---VL--LARSLLGDFPGCEDIEGMVIPSV 175
           C+  C FC+    +L  N TA E   ++ +   V+  +  S      G   + G+   ++
Sbjct: 72  CANNCVFCW----RLNSNPTAAEWKWMVDEPKDVVEGMISSHQALINGVRGMPGVTDEAL 127

Query: 176 GRKI--SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
              +   +  +  +GEP+  +  V + L++         S     ++   F   I  +  
Sbjct: 128 EEALAPRHCALSLVGEPIL-YPYVNEFLNLLHAK-----SISSFLVNNGQFPDAIRNLAP 181

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
                L +S+ A +     IL         E   ++  +        R  F   M+ G N
Sbjct: 182 VTQ--LYLSVDAPNQKTMKILDRPVLPDYWERFNESVNN--MRKKKHRTVFRLTMIDGFN 237

Query: 294 DSPRDALNLIKIL-KGIPAKINLIPFNPWPGCEYLC-------SDQKDIVTFSECI 341
             P +     ++  +G P  I +    P     +            + +  F++ +
Sbjct: 238 MEPENLPEYKELFDRGQPHFIEIKRLTPAFSGNHNTILCIKNVPSWEKMKAFAQQL 293


>gi|317052952|ref|YP_004119306.1| Radical SAM domain protein [Pantoea sp. At-9b]
 gi|316953279|gb|ADU72750.1| Radical SAM domain protein [Pantoea sp. At-9b]
          Length = 369

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 8/144 (5%)

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
           G      R+ +     L + L AV+  +R  ++P   +  ++  ++A      +    ++
Sbjct: 215 GDAKWFQRLKDAGIDALGMHLEAVTPAVRARIMPGKAQVSVDQYLEAFADAVAVFGRGQV 274

Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIK 342
           +  Y++  G+ D+PR  L+L + L  +     ++PF P  G         D    S  ++
Sbjct: 275 S-TYIL-AGLGDTPRAILSLSETLIDLGVYPFVVPFVPISGTPLEHHPAPDSQFMSSILQ 332

Query: 343 RSGY---SSPIRTPRGLDILAACG 363
             G     + +R+    DI A CG
Sbjct: 333 PLGQMLSQARLRSS---DIKAGCG 353


>gi|294955470|ref|XP_002788521.1| hypothetical protein Pmar_PMAR010051 [Perkinsus marinus ATCC
          50983]
 gi|239904062|gb|EER20317.1| hypothetical protein Pmar_PMAR010051 [Perkinsus marinus ATCC
          50983]
          Length = 117

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71
          +    LE  L+++G  ++H       +   I+     D   +S IS++   LL++ F   
Sbjct: 20 LDTPALEAFLVEVGSSRQHASTIQKALLTDIH----FDPSRLSGISKKAASLLDEAFMRC 75

Query: 72 YPEIVDEKISCDGTRKWLLRFPAR 95
             +  +++S DGT K L+     
Sbjct: 76 STSVTMKQVSSDGTTKMLITLQVG 99


>gi|220905214|ref|YP_002480526.1| Radical SAM domain-containing protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869513|gb|ACL49848.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 481

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 13/144 (9%)

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGEEIGVMLAISLHAV 246
           G+PL N D +++S+ +     G       +  +T+   P  +AR+ E     + +SL++ 
Sbjct: 254 GDPLMNADLLEESIRLFRSGGG----AGTVNCNTNASRPQAVARLAEAGLTSMRVSLNSA 309

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
              L          Y L+ + ++ R     S    +    +   GI D+  +   L +++
Sbjct: 310 RPVL-YERYYRPVDYCLDDVKESIR--AARSRGIFVALNLLFFPGITDTEEELDALARMV 366

Query: 307 KGIPAKINLIPF---NPWPGCEYL 327
                 +++I +   N  P   + 
Sbjct: 367 GENG--VSMIQWRNLNIDPEWYFR 388


>gi|317152744|ref|YP_004120792.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942995|gb|ADU62046.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 423

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 94/279 (33%), Gaps = 55/279 (19%)

Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           C++ C++C          R      IL     A+ +              +     +I+ 
Sbjct: 31  CNIQCNYCNRKYDCVNESRPGVTSGILKPFQAAQYMDK------------VLEKEPRITV 78

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
             + G G+P  N   V +++ + ++    +    S   +     G +P +  +       
Sbjct: 79  AGIAGPGDPFANPAEVIETMRLLNERHPELLFCLSTNGM-----GILPYLDDIAALGVSH 133

Query: 239 LAISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEY 286
           + I++ AV   +   +    +               LE  + A R          +    
Sbjct: 134 VTITISAVDPAIGARIYAWVKDGNVVYRGEQGAALLLERQLAAIRGLKER--GIVVKINS 191

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTFSECIK 342
           +++ G+N+     + + ++   + A I N+IP  P     +       +  ++   +  +
Sbjct: 192 IIIPGVNEG--HLVEVARVTAALGADIQNMIPLKPTQDTPFAELPEPGRDVVLPLRK--E 247

Query: 343 RSGYS---SPIRTPR-------GLDILAA-CGQLKSLSK 370
             G+    +  +  R       G D  AA CG L++ +K
Sbjct: 248 AGGFISQMTHCKRCRADAVGLLGNDQSAALCGTLQACAK 286


>gi|170024904|ref|YP_001721409.1| pyruvate formate lyase-activating enzyme 1 [Yersinia
           pseudotuberculosis YPIII]
 gi|186894824|ref|YP_001871936.1| pyruvate formate lyase-activating enzyme 1 [Yersinia
           pseudotuberculosis PB1/+]
 gi|21959685|gb|AAM86344.1|AE013882_5 pyruvate formate lyase activating enzyme 1 [Yersinia pestis KIM 10]
 gi|45435898|gb|AAS61455.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
           Microtus str. 91001]
 gi|169751438|gb|ACA68956.1| pyruvate formate-lyase activating enzyme [Yersinia
           pseudotuberculosis YPIII]
 gi|186697850|gb|ACC88479.1| pyruvate formate-lyase activating enzyme [Yersinia
           pseudotuberculosis PB1/+]
          Length = 265

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 92/283 (32%), Gaps = 57/283 (20%)

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC-----YTGTQKLVRNLT 143
           L+      +G     E+    +       V  Q GC + C +C     +         +T
Sbjct: 15  LVEDKKPVLGRIHSFESCGTVDGPGIRFIVFFQ-GCLMRCLYCHNRDTWDTHGGKE--VT 71

Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
            EE++ + +  R  +    G                   V    GE +   + V+     
Sbjct: 72  VEELVKEAVTYRHFMNASGGG------------------VTASGGEAILQAEFVRDWFR- 112

Query: 204 ASDSMGLSFSKRRITLSTSGFV----PNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259
           A    G+        L T+GFV    P I  + +    ++ + L  + + +   LV ++ 
Sbjct: 113 ACHKEGI-----HTCLDTNGFVRRYDPVIDELLDATD-LVMLDLKQMDDSIHQNLVGVSN 166

Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIP 317
              LE        Y    N  +    YV++ G +D  + A  L +  + +    KI L+P
Sbjct: 167 HRTLE-----FARYLAKRNQ-KTWIRYVVVPGWSDDDKSAHMLGEFTQNMSNIEKIELLP 220

Query: 318 FNPWPGCEY------------LCSDQKDIVTFSECIKRSGYSS 348
           ++     ++                ++ +      ++  G+  
Sbjct: 221 YHELGKHKWIAMGEEYKLDGVKPPTKEIMDRVKGILEGYGHKV 263


>gi|308270504|emb|CBX27116.1| hypothetical protein N47_A11450 [uncultured Desulfobacterium sp.]
          Length = 436

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 77/201 (38%), Gaps = 28/201 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C  C +    L  N    +I      ++  +   P  E+I  +    + +   ++V
Sbjct: 205 CNARCIGCLS----LQNN---SDIKN----SQDRISFTPTPEEISEIAAEHINKVKRSVV 253

Query: 184 MMGMG---EPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIA-RVGEEIGV 237
             G G   +PL     ++ ++ +   S   G       I ++T+  +P I   + +    
Sbjct: 254 SFGQGCEGDPLLAAHVIEPAIRLIRKSTQDG------TINMNTNASMPKILTNLFDAGLD 307

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            + IS+++V  +  +     N  Y    +I +      L   + ++  Y+   G  DSP 
Sbjct: 308 SVRISMNSVRENCYDTYFRPN-GYSFSDVIKSID--MALEKNKFVSINYLNCPGFTDSPE 364

Query: 298 DALNLIKILKGIPAKINLIPF 318
           +   L   LK  P  +N I +
Sbjct: 365 EIAALYDFLKKHP--VNFIQW 383


>gi|318606276|emb|CBY27774.1| pyruvate formate-lyase activating enzyme [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 246

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ + +  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELVKEAVTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A    G+        L T+GFV    P I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHEEGI-----HTCLDTNGFVRRYDPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  + + +   LV ++    LE        Y    N  +    YV++ G +
Sbjct: 123 ATD-LVMLDLKQMDDSVHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D  + A  L +  + +    KI L+P++     ++                 + +     
Sbjct: 176 DDDKSAHMLGEFTQNMTNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPTTEIMDRVKG 235

Query: 340 CIKRSGYSS 348
            ++  G+  
Sbjct: 236 ILESYGHKV 244


>gi|154491018|ref|ZP_02030959.1| hypothetical protein PARMER_00935 [Parabacteroides merdae ATCC
          43184]
 gi|154088766|gb|EDN87810.1| hypothetical protein PARMER_00935 [Parabacteroides merdae ATCC
          43184]
          Length = 62

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 1  MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF 50
          MN  +K  L+GM  +EL+    + G+P         Q+  W+Y +   DF
Sbjct: 1  MN--EKRRLLGMTLDELKGVAFEAGLPG----YAAKQMADWLYKKK-SDF 43


>gi|238784521|ref|ZP_04628529.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia bercovieri
           ATCC 43970]
 gi|238714584|gb|EEQ06588.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia bercovieri
           ATCC 43970]
          Length = 246

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ + +  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELVKEAVTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A    G+        L T+GFV    P I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHEEGI-----HTCLDTNGFVRRYDPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  + + +   LV ++    LE        Y    N  +    YV++ G +
Sbjct: 123 ATD-LVMLDLKQMDDSVHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D  + A  L +  + +    KI L+P++     ++                 + +     
Sbjct: 176 DDDKSAHMLGEFTQNMTNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPTAEIMDRVKG 235

Query: 340 CIKRSGYSS 348
            ++  G+  
Sbjct: 236 ILESYGHKV 244


>gi|325577286|ref|ZP_08147770.1| pyruvate formate-lyase activating enzyme [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160868|gb|EGC72989.1| pyruvate formate-lyase activating enzyme [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 256

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 89/246 (36%), Gaps = 50/246 (20%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T   +  R ++ EE++ +V+  R  +    G     G         +
Sbjct: 39  GCLMRCKYCHNRDTWDLEGGREISVEELMKEVVSYRHFMNATGGGVTASGGEAVLQAEFV 98

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
            +                 ++      + G++       L T+GFV +   + +E+  + 
Sbjct: 99  RD---------------WFRACK----AEGIN-----TCLDTNGFVRHYDHIIDELLDVT 134

Query: 240 AISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            + L  +   ++ +   L+ +  K  LE        Y    N  R    YV++ G  D+ 
Sbjct: 135 DLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQ-RTWIRYVVVPGYTDND 188

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
            D   L + ++G+    K+ L+P++     ++                ++ +      ++
Sbjct: 189 HDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTLGFEYELADVLPPTKESLEHIKTILE 248

Query: 343 RSGYSS 348
             G++ 
Sbjct: 249 GYGHTV 254


>gi|293396829|ref|ZP_06641103.1| pyruvate formate-lyase 1-activating enzyme [Serratia odorifera DSM
           4582]
 gi|291420300|gb|EFE93555.1| pyruvate formate-lyase 1-activating enzyme [Serratia odorifera DSM
           4582]
          Length = 246

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++   +  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKDTVSYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A    G++       L T+GFV    P I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHQEGIN-----TCLDTNGFVRRYDPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++D+   LV ++    LE        Y    N  R    YV++ G +
Sbjct: 123 TTD-LVMLDLKQMNDDIHQNLVGVSNHRTLE-----FARYLAKRNQ-RTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339
           D  R A  L +  K +    KI L+P++          G EY            +     
Sbjct: 176 DDDRSAHLLGEFTKDMANIEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKADTMDRVKG 235

Query: 340 CIKRSGYSS 348
            ++  G++ 
Sbjct: 236 ILESYGHTV 244


>gi|295402436|ref|ZP_06812389.1| pyruvate formate-lyase activating enzyme [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112710|ref|YP_003991026.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. Y4.1MC1]
 gi|294975527|gb|EFG51152.1| pyruvate formate-lyase activating enzyme [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217811|gb|ADP76415.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. Y4.1MC1]
          Length = 249

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 77/240 (32%), Gaps = 46/240 (19%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC L C +C+   T      + +T EEI+  V                    +P +    
Sbjct: 27  GCVLRCQYCHNADTWEIGKGKEMTVEEIIDDV-----------------KTYLPFINASN 69

Query: 180 SNIVMMGMGEPLCNFD---NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
             I + G GEPL   D    + K+         +  S    T + + F   +  +     
Sbjct: 70  GGITVSG-GEPLLQIDFLIELFKACKKLGIHTAIDSSGGCYT-TEASFQQKLNELLSYTD 127

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           ++L + L  +       L     K+ L+        +    N   +   +V++  I D P
Sbjct: 128 LIL-LDLKHIDEKKHRKLTGKTNKHILQ-----FAQFLSEKN-VPVWIRHVLVPTITDDP 180

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
            D   L   ++ +    KI ++P++     ++                ++ +      + 
Sbjct: 181 NDLRRLAAFIRTLKNVKKIEILPYHKLGVYKWKALGLKYPLEGIEPPSEESVQMAQRILN 240


>gi|194334439|ref|YP_002016299.1| nitrogenase cofactor biosynthesis protein NifB [Prosthecochloris
           aestuarii DSM 271]
 gi|194312257|gb|ACF46652.1| nitrogenase cofactor biosynthesis protein NifB [Prosthecochloris
           aestuarii DSM 271]
          Length = 424

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 63/164 (38%), Gaps = 23/164 (14%)

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIG 236
           IS + + G G+P  N +   ++L +  +          + ++T+G   +P I  + +   
Sbjct: 75  ISVVGIAGPGDPFANPEETMETLRLVREKY----PDMLLCVATNGLNVMPYIEELAQLQV 130

Query: 237 VMLAISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITF 284
             + ++++AV  ++ + +                 K  LE  + A +    +        
Sbjct: 131 SHVTLTINAVDPEIGSEIYAWVRHRKKMYRDTNAAKILLESQLAALKKLKEI--GVTAKV 188

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327
             +++ G+ND  +    + K +  + A I N +P+       + 
Sbjct: 189 NAIVIPGVND--KHVAEVAKTVAELGADIFNCLPYYNTAETVFE 230


>gi|323341138|ref|ZP_08081386.1| pyruvate formate-lyase activating enzyme [Lactobacillus ruminis
           ATCC 25644]
 gi|323091559|gb|EFZ34183.1| pyruvate formate-lyase activating enzyme [Lactobacillus ruminis
           ATCC 25644]
          Length = 274

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 56/245 (22%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC++ C FC+   T  + +   +TA+E+L + L  R   G+  G     G ++       
Sbjct: 44  GCNMRCKFCHNPDTWKKNVGTTMTADEVLKKALPYREFWGEQGGITLSGGEILLQPEF-- 101

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234
                               +L + +    L  S     L T G       P      + 
Sbjct: 102 --------------------ALDLFTKCKELGISTC---LDTCGQPFTRRKPWFDTFNKL 138

Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           + V   L + +  + +D   +L      +P E ++D C +   +   + +   +V++   
Sbjct: 139 LDVTDILLVDIKHIDSDKHKLLT----GFPNENILDLCEYLSEI--GKPVWIRHVLIPTQ 192

Query: 293 NDSPRDALNLIKILKGIP---AKINLIPFN-------PWPGCEYL-----CSDQKDIVTF 337
            D   D   L   +K       K+ ++P++          G  Y         Q  +   
Sbjct: 193 TDFDEDLEKLGNYIKTHLRNVMKVEVLPYHTMGVHKYHEMGIPYRLEGVEPPTQDRVENA 252

Query: 338 SECIK 342
              + 
Sbjct: 253 ERLLH 257


>gi|282599809|ref|ZP_05971952.2| pyruvate formate-lyase 1-activating enzyme [Providencia rustigianii
           DSM 4541]
 gi|282567912|gb|EFB73447.1| pyruvate formate-lyase 1-activating enzyme [Providencia rustigianii
           DSM 4541]
          Length = 197

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 25/148 (16%)

Query: 216 RITLSTSGFV----PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
              L T+GFV    P I  + E    ++ + L  + +++   LV ++    LE       
Sbjct: 52  HTCLDTNGFVRRYDPVIDELMEVTD-LVMLDLKQLDDEIHQKLVGVSNHRTLE-----FA 105

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY--- 326
            Y    N  +    YV++ G +D       L + +K +    KI L+P++     ++   
Sbjct: 106 RYLAKRNQ-KTWIRYVVVPGWSDDDHSVHMLGEFVKDMNNIEKIELLPYHELGKHKWETM 164

Query: 327 ---------LCSDQKDIVTFSECIKRSG 345
                        +  +      ++  G
Sbjct: 165 GEEYKLDGVKPPSKDVMERVKNILESYG 192


>gi|218533265|ref|YP_002424080.1| radical SAM protein [Methylobacterium chloromethanicum CM4]
 gi|218525568|gb|ACK86152.1| Radical SAM domain protein [Methylobacterium chloromethanicum CM4]
          Length = 367

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 12/146 (8%)

Query: 225 VPNIARVGEEIGV----MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
            P+  R  E + +     L + L AV+ ++R  ++P     PLE    A      +    
Sbjct: 209 PPDDDRWFERMKLSGVDALGMHLEAVTPEVRARIMPGKASVPLERYYAAFEAAVPVFGRG 268

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTF 337
           +++  Y++  G+ D+P   L + + L G+     ++PF P  G             +   
Sbjct: 269 QVS-TYIL-AGLGDTPEAILAMAERLIGMGVYPFVVPFVPISGTALESHPAPGPDFMHAI 326

Query: 338 SECIKRSGYSSPIRTPRGLDILAACG 363
            + +      + +R+    DI A CG
Sbjct: 327 LKPLAGMLAGANLRST---DIKAGCG 349


>gi|220931257|ref|YP_002508165.1| Radical SAM domain protein [Halothermothrix orenii H 168]
 gi|219992567|gb|ACL69170.1| Radical SAM domain protein [Halothermothrix orenii H 168]
          Length = 311

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 82/229 (35%), Gaps = 23/229 (10%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CS +C +C  G  K +  +   E+            +       +  ++   G ++  + 
Sbjct: 26  CSYSCVYCQVGRTKKM-CINPVEV--------DDKEEIKENVRQKLDLLEQRGERVDYLT 76

Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLA 240
            +  GEP    N   + KS+         + +   IT S++   P +    + +  V L 
Sbjct: 77  FIADGEPTLASNLAEIIKSVR------DFNINTAIITNSSTIDRPGVKESLKMVDWVSLK 130

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
              +  + ++ + +   +       + +    +    + + +T E +++KGINDS  +  
Sbjct: 131 CDAY--TEEVWHKINRPHGGLEPGKIKNGMIEFSRDYSGKMVT-ETMLVKGINDSEEELK 187

Query: 301 NLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYS 347
           ++   L  I   ++ I     P  E   +    + I       K  G +
Sbjct: 188 SIASFLNEIKPDVSYISIPTRPPAEEYAVSPTPESINRAYNIFKSQGLT 236


>gi|294140395|ref|YP_003556373.1| pyruvate formate-lyase 1 activating enzyme [Shewanella violacea
           DSS12]
 gi|293326864|dbj|BAJ01595.1| pyruvate formate-lyase 1 activating enzyme [Shewanella violacea
           DSS12]
          Length = 246

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 75/249 (30%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFCYTGTQKLVRN---------LTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
           GC + C +C+       R+         +  +E++ Q++  R  L    G     G    
Sbjct: 29  GCLMRCQYCH------NRDTWDLHGGSEVEVKELMEQIISYRPFLEASGGGVTASGGEAI 82

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
                +S +      E           +    D+ G              + P I  + +
Sbjct: 83  LQAEFVSELFAECKKEG----------IHTCLDTNGF----------VRKYTPIIDELID 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              ++L + +  + +     L  ++    L+        Y      ++    YV++ G  
Sbjct: 123 NTDLVL-LDIKHIDDQRHIDLTQVSNHRTLD-----FAQYLNKK-QQKTWIRYVVVGGFT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
           D    A  L   LK +    K+ L+P++     ++                 + +    +
Sbjct: 176 DDIGAAQRLADFLKPMTNIEKVELLPYHELGKHKWEAMGETYQLDNISPPSSETMEQIKK 235

Query: 340 CIKRSGYSS 348
               +G  +
Sbjct: 236 VFVDAGIKA 244


>gi|188025792|ref|ZP_02959835.2| hypothetical protein PROSTU_01734 [Providencia stuartii ATCC 25827]
 gi|188020518|gb|EDU58558.1| hypothetical protein PROSTU_01734 [Providencia stuartii ATCC 25827]
          Length = 273

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 83/252 (32%), Gaps = 62/252 (24%)

Query: 123 GCSLTCSFCY--------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           GC + C +C+        TG       +T EE++ + +  R  +    G           
Sbjct: 56  GCLMRCLYCHNRDTWDTHTGKM-----VTVEELMKEAVTYRHFMNATGGG---------- 100

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIAR 230
                   V    GE +   + V+            +       L T+GFV    P I  
Sbjct: 101 --------VTASGGEAILQAEFVRD---WFRACKAQNI---HTCLDTNGFVRRYDPVIDE 146

Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
           + E    ++ + L  +++D+   LV ++    LE        Y    N  +    YV++ 
Sbjct: 147 LMEVTD-LVMLDLKQLNDDIHQTLVGVSNHRTLE-----FARYLAKRNQ-KTWVRYVVVP 199

Query: 291 GINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVT 336
           G +D       L +  K +    KI L+P++     ++                ++ +  
Sbjct: 200 GWSDDDHSVHLLGEFTKDMKNIEKIELLPYHELGKHKWETMGEEYKLDGVKPPSKEIMER 259

Query: 337 FSECIKRSGYSS 348
               ++  G+  
Sbjct: 260 VKSILESYGHKV 271


>gi|153816513|ref|ZP_01969181.1| hypothetical protein RUMTOR_02766 [Ruminococcus torques ATCC 27756]
 gi|145846133|gb|EDK23051.1| hypothetical protein RUMTOR_02766 [Ruminococcus torques ATCC 27756]
          Length = 270

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 7/147 (4%)

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
           G + ++ ++  S  R+   +   G GEPL N+  VK  ++   +   +     R T++T+
Sbjct: 6   GKKALDFLIANSGKRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHDKHFRFTVTTN 64

Query: 223 GFV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           G +    I      E   V+L++      ND   +    N K   ++++   +      N
Sbjct: 65  GVLLNDEIQEFVNKEMDNVVLSLDGRKEVNDK--MRPFRNGKGSYDLIVPKFQKLAESRN 122

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKI 305
             +        +   D   D L+   +
Sbjct: 123 QEKYYIRGTFTRNNLDFSNDVLHFADL 149


>gi|146304501|ref|YP_001191817.1| tRNA-modifying enzyme [Metallosphaera sedula DSM 5348]
 gi|145702751|gb|ABP95893.1| Wyosine base formation [Metallosphaera sedula DSM 5348]
          Length = 364

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 9/161 (5%)

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
           I+ + +             +           K S++ +   GEP   ++ + + +     
Sbjct: 105 IVERSIEEHKRSVSGYLGREGVENNKALEAMKPSHVAISLTGEPTL-YERIGELIRE-YH 162

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
             G+        L TSG  P++    EE    L +SL A + +   ++          ++
Sbjct: 163 KRGI-----TTFLVTSGVRPDVLASLEEEPSQLFVSLQAPNEEKHRLINRPVVANSWNLV 217

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
           +      P  S          M+K +N S  DA    K+++
Sbjct: 218 MKTLEILPSFS--SPTVIRMTMMKEVNMSDDDAREFAKLMR 256


>gi|153816128|ref|ZP_01968796.1| hypothetical protein RUMTOR_02376 [Ruminococcus torques ATCC 27756]
 gi|145846613|gb|EDK23531.1| hypothetical protein RUMTOR_02376 [Ruminococcus torques ATCC 27756]
          Length = 331

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 7/147 (4%)

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
           G + ++ ++  S  R+   +   G GEPL N+  VK  ++   +   +     R T++T+
Sbjct: 6   GKKALDFLIANSGKRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHDKHFRFTVTTN 64

Query: 223 GFV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
           G +    I      E   V+L++      ND   +    N K   ++++   +      N
Sbjct: 65  GVLLNDEIQEFVNKEMDNVVLSLDGRKEVNDK--MRPFRNGKGSYDLIVPKFQKLAESRN 122

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKI 305
             +        +   D   D L+   +
Sbjct: 123 QEKYYIRGTFTRNNLDFSNDVLHFADL 149


>gi|86605193|ref|YP_473956.1| pyruvate formate-lyase activating enzyme [Synechococcus sp.
           JA-3-3Ab]
 gi|86553735|gb|ABC98693.1| pyruvate formate-lyase activating enzyme [Synechococcus sp.
           JA-3-3Ab]
          Length = 250

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 78/243 (32%), Gaps = 47/243 (19%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+       R+  A     QV+   SL+ +   C +                
Sbjct: 37  GCPLRCLYCHNPD---CRDPNAG----QVVTVDSLMAEIQRCRNYYLKGGG--------- 80

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIAR--VGEEIGVML 239
           V    GEPL   + V +      +            L TSG+ P  +A+  +     V+L
Sbjct: 81  VTASGGEPLMQPNFVAEIFRRCHELD------LHTALDTSGYAPLGVAKPVLAHTDLVLL 134

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            I  +         L        L+  +D  R+   +         +V++ G+ D   + 
Sbjct: 135 DIKSYLP------ELYRKVTGVSLQPTLDLARYLDQIHK--PTWIRFVLVPGLTDPEENI 186

Query: 300 LNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSG 345
             L + +  +    ++ ++PF+     ++                 + I    +  +  G
Sbjct: 187 KGLAEFVATLSNVERVEVLPFHKMGEYKWQQLGLPYTLSDVQPPTPEQINHALQIFRERG 246

Query: 346 YSS 348
             +
Sbjct: 247 LVA 249


>gi|304397064|ref|ZP_07378943.1| pyruvate formate-lyase activating enzyme [Pantoea sp. aB]
 gi|304355213|gb|EFM19581.1| pyruvate formate-lyase activating enzyme [Pantoea sp. aB]
          Length = 246

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 75/245 (30%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         ++ E ++  VL  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--ISVEALMADVLSYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +    D+ G              + P I  + +    
Sbjct: 87  FVRDWFRACKAEG----------IHTCLDTNGF----------VRRYDPVIDELLDVTD- 125

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++D+  ILV ++    L+        Y       R    +V++ G +D   
Sbjct: 126 LVMLDLKQMNDDVHQILVGVSNHRTLD-----FARYLQKKGK-RTWIRFVVVPGYSDDDD 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
            A  L +  + +    KI L+P++     ++                ++ +      +  
Sbjct: 180 TAHRLGEFTRDMQNVEKIELLPYHELGKHKWIAMGEEYKLDGVKPPGKETMERVKNILAS 239

Query: 344 SGYSS 348
            G+  
Sbjct: 240 YGHEV 244


>gi|260772500|ref|ZP_05881416.1| pyruvate formate-lyase activating enzyme [Vibrio metschnikovii CIP
           69.14]
 gi|260611639|gb|EEX36842.1| pyruvate formate-lyase activating enzyme [Vibrio metschnikovii CIP
           69.14]
          Length = 246

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 80/245 (32%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC   C +C     +         ++ EEI+ +    R  +    G     G        
Sbjct: 29  GCLFRCKYCHNRDTWDTHSGKE--VSVEEIIKEAKSYRHFMNASGGGITCSGGESMLQPE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + ++      E           +    D+ G    K         + P I  V +   +
Sbjct: 87  FVRDVFRAAKAEG----------IHTCLDTNGY-IRK---------YTPVIDEVLDVTDL 126

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +L + +  + +D+   L+ ++ K      +D  R+    +  +     YV++ G  D   
Sbjct: 127 VL-LDIKQIKDDVHQDLIGVSNK----RTLDFARYL--HTIGKATWLRYVVVPGYTDDEE 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343
            A  L + ++ +    KI L+P++     ++                ++ +    + + +
Sbjct: 180 SAHLLGQFIQEMDNIEKIELLPYHKLGAHKWEAMGETYPLEGVNPPSKETMDKIVDVLMQ 239

Query: 344 SGYSS 348
             ++ 
Sbjct: 240 YHHNV 244


>gi|307299480|ref|ZP_07579280.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914879|gb|EFN45266.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 316

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 74/246 (30%), Gaps = 49/246 (19%)

Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLT--------AEEILLQVLLARSLLGDFPGCEDI 167
           +C      C+  C +C         N+T         EEIL +        G+       
Sbjct: 19  VCTIPFKTCNYACVYC---QLGRTTNMTNTRQTFYPPEEILSEARRFIEAHGEESFDV-- 73

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
                         + ++G GEP      D + + L   +         + + L T+G +
Sbjct: 74  --------------VTVVGEGEPTLYKPLDAIVRGLREMT--------GKPLVLITNGSL 111

Query: 226 PNIARVGEEIG----VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
                + EEI     VM  +   A   +    +     K   E +      +        
Sbjct: 112 LFDRELVEEIKDFDIVMPTLD--AKDEESFKRINRPFGKLTYEKVYKGLLDF-SKEFKGE 168

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFS 338
           I  E +++K  NDS      L K +  I      IN+ P  P          +  I  F+
Sbjct: 169 IWLEVMLIKDYNDSDGFLRELKKKIDQIKPARVYINV-PARPPAESGIEVPSESAIE-FA 226

Query: 339 ECIKRS 344
             +  +
Sbjct: 227 RTLLNA 232


>gi|319898144|ref|YP_004136341.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae
           F3031]
 gi|317433650|emb|CBY82035.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae
           F3031]
          Length = 246

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 87/246 (35%), Gaps = 50/246 (20%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T      R ++ EE++ +V+  R  +    G     G         +
Sbjct: 29  GCLMRCKYCHNRDTWDLDGGREISVEELMKEVVSYRHFMNATGGGVTASGGEAILQAEFV 88

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
            +                 ++      + G++       L T+GFV +   + +E+  + 
Sbjct: 89  RD---------------WFRACK----AEGIN-----TCLDTNGFVRHYDHIIDELLDVT 124

Query: 240 AISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            + L  +   ++ +   L+ +  K  LE        Y    N       YV++ G  DS 
Sbjct: 125 DLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQH-TWIRYVVVPGYTDSD 178

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
            D   L + ++G+    K+ L+P++     ++                ++ +      ++
Sbjct: 179 HDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTLGLDYELEDVLPPTKESLEHIKTILE 238

Query: 343 RSGYSS 348
             G++ 
Sbjct: 239 GYGHTV 244


>gi|206896250|ref|YP_002247794.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738867|gb|ACI17945.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM
           5265]
          Length = 312

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 80/240 (33%), Gaps = 42/240 (17%)

Query: 124 CSLTCSFCYTGT---QKLVRNLT--AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           CS  C +C  G     ++ R L     E+  +V                +   I    + 
Sbjct: 26  CSYNCVYCQVGRTLHMQVKRTLYSNPSEVFDEV--------------KKKVERIGETQQN 71

Query: 179 ISNIVMMGMGEPLCNFDNVK-KSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIG 236
           +  I ++  GEP    D+   + +    D   L      IT S+  +  ++   + +   
Sbjct: 72  VDYISIVPDGEP--TLDSSLGELIERLKD---LGLPVAVITNSSLTWDKSVQEDLKKADW 126

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V + I   + +      +   +    L+ ++   + + G       T E +++K +ND+P
Sbjct: 127 VSVKIDAVSPNTWK--QINRPHASLSLDEILQGMQEFAGSYTGTLCT-ETMLVKDLNDNP 183

Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYL--------CSDQKDIVTFSECIKRSGYSS 348
            +   +   +K       + P+  + G              + + I        + G ++
Sbjct: 184 EELTAIANFVKSR-----ISPYKAYIGVPTRPPAEPWVSRPEPESITAAYAIFTKEGLNA 238


>gi|255030887|ref|ZP_05302838.1| hypothetical protein LmonL_20406 [Listeria monocytogenes LO28]
          Length = 39

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 350 IRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384
           IR   G DI AACGQL+S   KR+    R + +   
Sbjct: 1   IRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAA 36


>gi|134297917|ref|YP_001111413.1| pyruvate formate-lyase activating enzyme [Desulfotomaculum reducens
           MI-1]
 gi|134050617|gb|ABO48588.1| pyruvate formate-lyase activating enzyme [Desulfotomaculum reducens
           MI-1]
          Length = 229

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 78/220 (35%), Gaps = 40/220 (18%)

Query: 117 CVSSQVGCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
           CV    GC L C +C     +         + ++EI+ +V   +S   +  G        
Sbjct: 21  CVVFFQGCLLRCRYCHNPDTWDLLGGQE--MDSDEIVKKVRRFKSYFHNNGG-------- 70

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
                     I + G GEPL   D    ++       G+  +         G +  I   
Sbjct: 71  ----------ITLSG-GEPLLQPD-FAFAILQQCKKEGIHTAVDTSGCIDVGALEKILPF 118

Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
            +     L + + AV + L + L    +    +M +D  R          +   YV+L G
Sbjct: 119 TDL----LLLDVKAVDDSLYHWL-TGGKAETFQMAVDYIRQ-----QKTPLWLRYVVLPG 168

Query: 292 INDSPRDALNLIKILK--GIPA-KINLIPFNPWPGCEYLC 328
           +NDSP     L K++   G    K+ L+P++     ++  
Sbjct: 169 MNDSPEYRYRLEKLINSLGDQVKKVELLPYHTMGVHKWKK 208


>gi|212709771|ref|ZP_03317899.1| hypothetical protein PROVALCAL_00819 [Providencia alcalifaciens DSM
           30120]
 gi|212687582|gb|EEB47110.1| hypothetical protein PROVALCAL_00819 [Providencia alcalifaciens DSM
           30120]
          Length = 197

 Score = 46.0 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 25/148 (16%)

Query: 216 RITLSTSGFV----PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
              L T+GFV    P I  + +    ++ + L  + +++   LV ++    LE       
Sbjct: 52  HTCLDTNGFVRRYDPVIDELMDVTD-LVMLDLKQLDDEIHQKLVGVSNHRTLE-----FA 105

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY--- 326
            Y    N  +    YV++ G +D       L + +K +    KI L+P++     ++   
Sbjct: 106 RYLAKRNQ-KTWIRYVVVPGWSDDDHSVHMLGEFVKDMDNIEKIELLPYHELGKHKWETM 164

Query: 327 ---------LCSDQKDIVTFSECIKRSG 345
                        ++ +      ++  G
Sbjct: 165 GEEYKLDGVRPPSKEVMERVKSILESYG 192


>gi|330990596|ref|ZP_08314553.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB
           [Gluconacetobacter sp. SXCC-1]
 gi|329762298|gb|EGG78785.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB
           [Gluconacetobacter sp. SXCC-1]
          Length = 315

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+ +     L + L A +  +R  ++P      ++  ++A      +    ++   Y+
Sbjct: 170 FQRLRDAGADSLGMHLEAATQAVREKIMPGKATVSVDRYMNAFASAVPVFGRGQVN-TYI 228

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSEC 340
           +  G+ DS  D L L + L  +     ++PF P  G             + +        
Sbjct: 229 L-AGLGDSAADILALAERLIALGVYPFVVPFVPISGTPLENHAPPSADFMKSVLAPLGRM 287

Query: 341 IKRSGYSSPIRTPRGLDILAACG 363
           ++ +   S        DI A CG
Sbjct: 288 LREANMKST-------DIRAGCG 303


>gi|218258025|ref|ZP_03474467.1| hypothetical protein PRABACTJOHN_00120 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225824|gb|EEC98474.1| hypothetical protein PRABACTJOHN_00120 [Parabacteroides johnsonii
           DSM 18315]
          Length = 240

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 69/240 (28%), Gaps = 40/240 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N    E        +         + +   V+          
Sbjct: 27  GCPLRCLYCH--------NPDTWE-------VKRETPYQLEPKALLAEVLRYKNFIAKGG 71

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V +  GEPL   + +K+         G+        L TSG++ +   +     V L + 
Sbjct: 72  VTVTGGEPLLQPEFLKEFFR-LCRENGI-----HTALDTSGYICSGKALEVLEYVDLVLL 125

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
                +     L P      L+  +              +   +V++ G+ D+  D   L
Sbjct: 126 DIKTIDA---GLHPRLTAVKLDNTLRFLDELEKRD--IPVWVRHVVVPGLTDNDEDLEKL 180

Query: 303 IKILKGIPA--KINLIPFNPWPGCEYLCS------------DQKDIVTFSECIKRSGYSS 348
              +       K  L+P++     +Y                 + +       ++ G + 
Sbjct: 181 AGYVSRYKVIQKAELLPYHTMGTYKYEAQGLDYKLKGVEPLSAERLANAKTIFRKHGINV 240


>gi|206895500|ref|YP_002247405.1| heme biosynthesis (NirJ-2) family protein [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738117|gb|ACI17195.1| heme biosynthesis (NirJ-2) family protein [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 423

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 24/195 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C++ C +C+                      +  + DF   +D   +++ S
Sbjct: 68  ALCLNVTHTCNMACKYCFAQQGN--------------YGGQQAVMDFAVAKDAVDLLMKS 113

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--G 232
                ++I   G GEPL  +D V+++L+ A++       K R +L+T+G +    ++   
Sbjct: 114 SSSW-ADIDFFG-GEPLIAWDTVEQTLAYATERAMAKNKKVRFSLTTNGLLLTPDKLDVL 171

Query: 233 EEIGVMLAISLHAVS---NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +   V L +SL       +  R   V        + +I+A +        +         
Sbjct: 172 DRYNVNLTLSLDGPRVVHDKFR---VDRAGDGTFDKVIEAFKEVERRRQGKNYYVRGTFT 228

Query: 290 KGINDSPRDALNLIK 304
               +       L+ 
Sbjct: 229 HDTLNFSESVTFLVD 243


>gi|167624514|ref|YP_001674808.1| pyruvate formate lyase-activating enzyme 1 [Shewanella halifaxensis
           HAW-EB4]
 gi|167354536|gb|ABZ77149.1| pyruvate formate-lyase activating enzyme [Shewanella halifaxensis
           HAW-EB4]
          Length = 246

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              +  ++++ Q++  R      P  E   G V  S G 
Sbjct: 29  GCLMRCLYCHNRDTWDLHGGKE--MKVDDLMSQIISYR------PFLEASGGGVTASGGE 80

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            I     +           + K+        G+        L T+GFV    P I  + +
Sbjct: 81  AILQADFVA---------ELFKACK----KEGI-----HTCLDTNGFVRKHTPIIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              ++L + +  + +    +L  ++    L+        Y      ++    YV++ G  
Sbjct: 123 NTDLVL-LDIKQIDDAKHIVLTNVSNHRTLQ-----FAEYLHKR-GQKTWIRYVVVGGYT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFN-------PWPGCEYL-----CSDQKDIVTFSE 339
           D    A  L + +K +    K+ L+P++          G +Y          + +    +
Sbjct: 176 DDIPSAQALAEFIKPMTNVEKVELLPYHELGKHKWEAMGVDYELNTISPPSTETMEQIKK 235

Query: 340 CIKRSGYSS 348
                G ++
Sbjct: 236 VFTDMGINA 244


>gi|238749780|ref|ZP_04611285.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia rohdei ATCC
           43380]
 gi|238712435|gb|EEQ04648.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia rohdei ATCC
           43380]
          Length = 246

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ + +  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELVKEAVTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A    G+        L T+GFV    P I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHKEGI-----HTCLDTNGFVRRYDPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  + + +   LV ++    LE        Y    N  +    YV++ G +
Sbjct: 123 ATD-LVMLDLKQMDDSVHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D  + A  L +  + +    KI L+P++     ++                 + +     
Sbjct: 176 DDDKSAHMLGEFTQNMTNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPTTEIMDRVKG 235

Query: 340 CIKRSGYSS 348
            ++  G+  
Sbjct: 236 ILESYGHKV 244


>gi|153811927|ref|ZP_01964595.1| hypothetical protein RUMOBE_02320 [Ruminococcus obeum ATCC 29174]
 gi|149832061|gb|EDM87146.1| hypothetical protein RUMOBE_02320 [Ruminococcus obeum ATCC 29174]
          Length = 245

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 80/243 (32%), Gaps = 55/243 (22%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC++ C FC+   T      +  T  ++L Q L  ++  G+  G                
Sbjct: 31  GCAMRCQFCHNPDTWKMGEGQQYTPSQLLKQALRYKNYWGNKGG---------------- 74

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234
             I + G GEPL   D + +    A        +    TL TS        P  ++  E 
Sbjct: 75  --ITVSG-GEPLLQIDFLTELFRQAKA------AGVHTTLDTSANPYTEKEPFYSKWLEL 125

Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           +     + + +  +  +    L   + K     ++   R    +   + +   +V++ G 
Sbjct: 126 MKYTDLVLLDIKQIDEEEHIKLTGQSNKN----ILAMARKLSDM--GKPMWIRHVLVPGG 179

Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFN-------PWPGCEY-----LCSDQKDIVTFS 338
           +D       L   +  +    ++ ++P++          G  Y         ++ I    
Sbjct: 180 SDKDEYLHRLADFIHTLKTVERVEVLPYHTLGVFKWEQLGIPYPLEGVRPPSEERINNAR 239

Query: 339 ECI 341
           E +
Sbjct: 240 EIL 242


>gi|303246291|ref|ZP_07332571.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302492354|gb|EFL52226.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 431

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 69/190 (36%), Gaps = 27/190 (14%)

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGEEIGVMLAISLHAV 246
           GEPL   + + +++     + G       + ++T+  +P+ + R     G  + +SL + 
Sbjct: 248 GEPLTEIEAISEAVKRFRAAGGRG----TVNVNTNASLPDAVERFAASGGSSIRVSLSSA 303

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
              L        + Y    + ++       +    ++  ++   G++D+  +   L +++
Sbjct: 304 DPALYAAYYRP-KGYDFADVRESIAR--AKAGGLFVSLNFLFFPGVSDTEAELAQLTELI 360

Query: 307 KGIPA------KINLIP--FNPWPGCEYLCSDQKD-----IVTFSECIKRS------GYS 347
                       +NL P  +          ++        +  F + ++++      GY 
Sbjct: 361 TAYKVDFVQLRNLNLDPQLYMKVAAESGALTNPARLASMGLKNFRKRLRKACPWLGFGYF 420

Query: 348 SPIRTPRGLD 357
           +P R   G +
Sbjct: 421 NPYREEGGKE 430


>gi|290769880|gb|ADD61651.1| putative protein [uncultured organism]
          Length = 502

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 28/198 (14%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L CS+C+    K        E          L+    G   ++ ++  S
Sbjct: 101 ALCLHVAHTCNLNCSYCFAAQGKFH-----GE--------AGLMSFETGKRALDFLIEHS 147

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGF---VPNI 228
             R+   +   G GEPL NF+  K+ +            +F   R T++T+G       I
Sbjct: 148 GTRRNLEVDFFG-GEPLMNFEVCKQLVAYARSIEKEHNKNF---RFTMTTNGIGITDEVI 203

Query: 229 ARVGEEIG-VMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
               +E   V+L++     V++  R  L         + ++   +        +      
Sbjct: 204 DWCNKECHNVVLSLDGRKEVNDRFRVDL---AGNGSYDRIVPKFQKLVKARGGQGYYMRG 260

Query: 287 VMLKGINDSPRDALNLIK 304
                  D  +D  ++  
Sbjct: 261 TFTHHNVDFTKDLFHMAD 278


>gi|15921545|ref|NP_377214.1| tRNA-modifying enzyme [Sulfolobus tokodaii str. 7]
 gi|15622331|dbj|BAB66323.1| 358aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 358

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 17/199 (8%)

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKIS--NIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
                    G    EG+    V   I+  ++ +   GEP   +D + + +       GL 
Sbjct: 108 IEEHKRAVSGYFGREGVDKNKVKEAITPKHVAISLTGEPTL-YDRLGELIKE-YHKRGL- 164

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
                  L TSG  P+I    EE    L +SL A +     ++          +++    
Sbjct: 165 ----TTFLVTSGVRPDILASLEEEPTQLFVSLQAPNEFKHKLINRPIVANSWNLVMKTLE 220

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEYLCSD 330
             P  S          M+KG N S  DA    ++++   P  I +  +       Y  S 
Sbjct: 221 ILPSFS--SPTVIRMTMIKGFNMSDEDAREFARLMEIAQPTYIEVKAYMHVGPSTYRLSK 278

Query: 331 QK-----DIVTFSECIKRS 344
                  +I  F++ +   
Sbjct: 279 DAMPRHFEIKEFAKKLAEY 297


>gi|254166758|ref|ZP_04873612.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197624368|gb|EDY36929.1| radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 366

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 50/201 (24%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C +C    +K+ R+         V+ A  +         +E  +I S G  I+   
Sbjct: 48  CHAGCFYCPLSKEKMNRD---------VIFADEMPVHSDEDVLLEARLIDSKGTGITG-- 96

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST-SGFVPNIARVGE--------E 234
               G+P+   D V   + +  D+ G    +  I L T SG    I ++ +         
Sbjct: 97  ----GDPMEMVDRVIHYIHLLKDNFGE---EHHIHLYTASGSKEKIEKLADAGLDEIRFH 149

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               L   +     + R         + +E  +D                E  +L  + D
Sbjct: 150 PPPQLWTKMQGSIYEKRLN-------WAIESRMDTG-------------IEVPVLPDMKD 189

Query: 295 SPRDALNLIKILKGIPAKINL 315
                + L+K    +   +NL
Sbjct: 190 EL---IALVKFANDMGVFVNL 207


>gi|332701620|ref|ZP_08421708.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332551769|gb|EGJ48813.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 327

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 36/193 (18%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C +C          LT E         R          D        VG  +  + 
Sbjct: 29  CTMDCLYCEV---GRTAVLTTE---------RKAYVPAKAILDELAHWQEHVGLPLDAVT 76

Query: 184 MMGMGEPLCN--FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           + G GEPL N  F  V +               RRI  S    V   A +  E  V   +
Sbjct: 77  LGGSGEPLLNTEFGEVIR-------------GARRIMPSVPVAVLTNASLLVEPEVRREL 123

Query: 242 --------SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
                   SL ++ ++    +         + + +A   +     A RI  E +++ G+N
Sbjct: 124 GQADIVLPSLDSLVDEEFAAVNRPAPGVTPQAVAEALLAFRS-EFAGRIFLEVLLVAGVN 182

Query: 294 DSPRDALNLIKIL 306
           DS  +   L   +
Sbjct: 183 DSEENLRRLKAFV 195


>gi|289596447|ref|YP_003483143.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|289534234|gb|ADD08581.1| Radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 353

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 50/201 (24%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C +C    +K+ R+         V+ A  +         +E  +I S G  I+   
Sbjct: 35  CHAGCFYCPLSKEKMNRD---------VIFADEMPVHSDEDVLLEARLIDSKGTGITG-- 83

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST-SGFVPNIARVGE--------E 234
               G+P+   D V   + +  D+ G    +  I L T SG    I ++ +         
Sbjct: 84  ----GDPMEMVDRVIHYIHLLKDNFGE---EHHIHLYTASGSKEKIEKLADAGLDEIRFH 136

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               L   +     + R         + +E  +D                E  +L  + D
Sbjct: 137 PPPQLWTKMQGSIYEKRLN-------WAIESRMDTG-------------IEVPVLPDMKD 176

Query: 295 SPRDALNLIKILKGIPAKINL 315
                + L+K    +   +NL
Sbjct: 177 EL---IALVKFANDMGVFVNL 194


>gi|154504499|ref|ZP_02041237.1| hypothetical protein RUMGNA_02003 [Ruminococcus gnavus ATCC 29149]
 gi|153794981|gb|EDN77401.1| hypothetical protein RUMGNA_02003 [Ruminococcus gnavus ATCC 29149]
          Length = 257

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 85/238 (35%), Gaps = 55/238 (23%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C FC+   T + K    ++A+E+L +    RS  G   G                
Sbjct: 42  GCPMRCQFCHNPDTWSMKTGTQMSADELLDKAWKYRSYWGKSGG---------------- 85

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234
             I + G GEPL   D + +    A    G+       T+ TSG       P  ++  E 
Sbjct: 86  --ITVSG-GEPLLQIDFLLELFKKA-KEKGI-----HTTIDTSGAPFTREEPFFSKFEEL 136

Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           +     L + +  + ++   IL         + ++D  R+   ++    +   +V++   
Sbjct: 137 MKYTDLLLLDIKHIDDEQHKILTGHTN----QNILDLARYLSDINK--PVWIRHVLVPER 190

Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVT 336
           +D+      L   ++ +    K+ ++P++     ++                ++ I  
Sbjct: 191 SDNDEYLKKLDAFIQTLSNVEKVEVLPYHTLGEYKWKELGMEYPLEGIEPPTEERIRN 248


>gi|332686598|ref|YP_004456372.1| pyruvate formate-lyase activating enzyme [Melissococcus plutonius
           ATCC 35311]
 gi|332370607|dbj|BAK21563.1| pyruvate formate-lyase activating enzyme [Melissococcus plutonius
           ATCC 35311]
          Length = 254

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 87/247 (35%), Gaps = 60/247 (24%)

Query: 123 GCSLTCSFCYT------GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           GC + C FC+       G    +  +TA++I+ + L  RS  G+  G             
Sbjct: 31  GCRMRCEFCHNPDTWRIGAGGKL--VTADQIIEEALHYRSYWGEKGG------------- 75

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARV 231
                I + G GEPL   + +   + +   +  L  S    TL + G       P  ++ 
Sbjct: 76  -----ITVSG-GEPLLQIEFL---IDLFKKAKELGIST---TLDSCGKPFTREEPFFSQF 123

Query: 232 GEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
            E +     + + +  ++++    L   N     E ++D   +   +   + +   +V++
Sbjct: 124 NELLKYTDLVLLDIKHINSEKHKELTTFNN----ENILDLAHYLSEV--GQPVWIRHVLV 177

Query: 290 KGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIV 335
              +D     + L K +K +    K  ++P++     ++                 + + 
Sbjct: 178 PFRSDYDEYLIELDKFVKTLNNVDKFEVLPYHTMGKYKWEDLKIPYPLEGIEPPTDERVK 237

Query: 336 TFSECIK 342
              + + 
Sbjct: 238 NAKKILH 244


>gi|322382440|ref|ZP_08056337.1| coenzyme PQQ synthesis-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153584|gb|EFX45970.1| coenzyme PQQ synthesis-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 439

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 86/242 (35%), Gaps = 27/242 (11%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
            +     LC++    C+L+C +C+    K   +             R+++    G   I+
Sbjct: 65  RQTYVKALCLNVAHTCNLSCEYCFASQGKYNGS-------------RAIMSYEVGKRAID 111

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--P 226
            ++  S   +  ++   G GEPL  +  VK+ ++ A           R T +T+G +   
Sbjct: 112 YLLENSGHHRNLDVDFFG-GEPLMAWKVVKQIVAYARSKEKEYKKTFRFTFTTNGMLLND 170

Query: 227 NIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
            +     E    + +SL     V + LR     +  K   + ++   + +      +   
Sbjct: 171 EVTDFLNEEMYNVVLSLDGRKQVHDHLRK---TVTGKGSYDYIVPKFQEFVEKRGDKEYY 227

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECI 341
                 +   D   D  ++  +  G   KI++ P    P   Y  + +   DI    E +
Sbjct: 228 VRGTYTRNNVDFTNDIFHIADL--GFD-KISMEPVICDPREPYALTAENLPDIYNQYEIL 284

Query: 342 KR 343
            +
Sbjct: 285 AK 286


>gi|218135329|ref|ZP_03464133.1| hypothetical protein BACPEC_03234 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990714|gb|EEC56725.1| hypothetical protein BACPEC_03234 [Bacteroides pectinophilus ATCC
           43243]
          Length = 248

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 90/272 (33%), Gaps = 50/272 (18%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
           +G    IE+    +       + +Q GC + C FC+        N+   E          
Sbjct: 1   MGKIHSIESFGSVDGPGVRFVIFTQ-GCHMRCQFCHNPD---TWNMEDGE---------- 46

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
              +    + ++  +      K    + +  GEPL   D +   + + + +         
Sbjct: 47  ---EMSADDLLKQALRYKSYWKNKGGITVSGGEPLLQMDFL---IELFTKAKAKG---VN 97

Query: 217 ITLSTSGFV-----PNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
            TL TSG       P  +R  E + V   + + +  + ++    L   +    L+M    
Sbjct: 98  TTLDTSGNPFTRKEPFFSRFKELMEVTDLVMLDIKQIDDEKHKTLTGWSNANILDMA--- 154

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
              Y   +    +   +V++ G +D       L   +K +    ++ ++P++     +Y 
Sbjct: 155 --EYLSETGK-PMWIRHVLVPGGSDDDELLKRLDAFIKTLKNVDRVEVLPYHTLGTFKYE 211

Query: 328 ------------CSDQKDIVTFSECIKRSGYS 347
                          ++ I   +  +  + Y+
Sbjct: 212 ELGIDYPLKGVNPPSKERIDNANRLLHTADYT 243


>gi|163751863|ref|ZP_02159078.1| pyruvate formate-lyase 1 activating enzyme [Shewanella benthica
           KT99]
 gi|161328279|gb|EDP99441.1| pyruvate formate-lyase 1 activating enzyme [Shewanella benthica
           KT99]
          Length = 220

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 72/244 (29%), Gaps = 46/244 (18%)

Query: 123 GCSLTCSFCYT----GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           GC + C +C+             +  +E++ Q++  R  L    G     G         
Sbjct: 3   GCLMRCQYCHNRDTWDLHGGQE-VEVKELMEQIISYRPFLEASGGGVTASGGEAILQAEF 61

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           +S +      E           +    D+ G              + P I  + +    +
Sbjct: 62  VSALFAECKQEG----------IHTCLDTNGF----------VRKYTPIIDELLDNTD-L 100

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           + + +  + +     L  ++    LE        Y      ++    YV++ G  D    
Sbjct: 101 VMLDIKHIDDQRHIDLTQVSNHRTLE-----FAQYLNKK-QQKTWIRYVVVGGFTDDIGA 154

Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRS 344
           A  L   LK +    K+ L+P++     ++                 + +    +    +
Sbjct: 155 AQRLANFLKPMTNVEKVELLPYHELGKHKWEAMGETYQLDNISPPSSETMEQIKQVFVDT 214

Query: 345 GYSS 348
           G  +
Sbjct: 215 GIKA 218


>gi|51595746|ref|YP_069937.1| pyruvate formate lyase-activating enzyme 1 [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806669|ref|YP_650585.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis
           Antiqua]
 gi|108812757|ref|YP_648524.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis
           Nepal516]
 gi|145599586|ref|YP_001163662.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis
           Pestoides F]
 gi|149366638|ref|ZP_01888672.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           CA88-4125]
 gi|153946839|ref|YP_001401556.1| pyruvate formate lyase-activating enzyme 1 [Yersinia
           pseudotuberculosis IP 31758]
 gi|161484775|ref|NP_670093.2| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis KIM 10]
 gi|161511413|ref|NP_992578.2| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis biovar
           Microtus str. 91001]
 gi|162421299|ref|YP_001606121.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis Angola]
 gi|165924437|ref|ZP_02220269.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939007|ref|ZP_02227560.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009871|ref|ZP_02230769.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166211440|ref|ZP_02237475.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167400062|ref|ZP_02305580.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419547|ref|ZP_02311300.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424126|ref|ZP_02315879.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470141|ref|ZP_02334845.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis FV-1]
 gi|218928529|ref|YP_002346404.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis CO92]
 gi|229841350|ref|ZP_04461509.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843455|ref|ZP_04463601.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903166|ref|ZP_04518279.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis
           Nepal516]
 gi|270486961|ref|ZP_06204035.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis KIM
           D27]
 gi|294503371|ref|YP_003567433.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           Z176003]
 gi|51589028|emb|CAH20646.1| pyruvate formate-lyase 1 activating enzyme [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776405|gb|ABG18924.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           Nepal516]
 gi|108778582|gb|ABG12640.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           Antiqua]
 gi|115347140|emb|CAL20033.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis CO92]
 gi|145211282|gb|ABP40689.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           Pestoides F]
 gi|149291012|gb|EDM41087.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           CA88-4125]
 gi|152958334|gb|ABS45795.1| pyruvate formate-lyase 1-activating enzyme [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354114|gb|ABX88062.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis Angola]
 gi|165913154|gb|EDR31778.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923497|gb|EDR40629.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991267|gb|EDR43568.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207211|gb|EDR51691.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962288|gb|EDR58309.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050770|gb|EDR62178.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056975|gb|EDR66738.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229678936|gb|EEO75039.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis
           Nepal516]
 gi|229689802|gb|EEO81863.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697716|gb|EEO87763.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|262361411|gb|ACY58132.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           D106004]
 gi|262365052|gb|ACY61609.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           D182038]
 gi|270335465|gb|EFA46242.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis KIM
           D27]
 gi|294353830|gb|ADE64171.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis
           Z176003]
 gi|320015759|gb|ADV99330.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 244

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ + +  R  +    G              
Sbjct: 27  GCLMRCLYCHNRDTWDTHGGKE--VTVEELVKEAVTYRHFMNASGGG------------- 71

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A    G+        L T+GFV    P I  + +
Sbjct: 72  -----VTASGGEAILQAEFVRDWFR-ACHKEGI-----HTCLDTNGFVRRYDPVIDELLD 120

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  + + +   LV ++    LE        Y    N  +    YV++ G +
Sbjct: 121 ATD-LVMLDLKQMDDSIHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 173

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D  + A  L +  + +    KI L+P++     ++                ++ +     
Sbjct: 174 DDDKSAHMLGEFTQNMSNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPTKEIMDRVKG 233

Query: 340 CIKRSGYSS 348
            ++  G+  
Sbjct: 234 ILEGYGHKV 242


>gi|167462543|ref|ZP_02327632.1| Radical SAM domain protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 422

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 86/242 (35%), Gaps = 27/242 (11%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
            +     LC++    C+L+C +C+    K   +             R+++    G   I+
Sbjct: 48  RQTYVKALCLNVAHTCNLSCEYCFASQGKYNGS-------------RAIMSYEVGKRAID 94

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--P 226
            ++  S   +  ++   G GEPL  +  VK+ ++ A           R T +T+G +   
Sbjct: 95  YLLENSGHHRNLDVDFFG-GEPLMAWKVVKQIVAYARSKEKEYKKTFRFTFTTNGMLLND 153

Query: 227 NIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
            +     E    + +SL     V + LR     +  K   + ++   + +      +   
Sbjct: 154 EVTDFLNEEMYNVVLSLDGRKQVHDHLRK---TVTGKGSYDYIVPKFQEFVEKRGDKEYY 210

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECI 341
                 +   D   D  ++  +  G   KI++ P    P   Y  + +   DI    E +
Sbjct: 211 VRGTYTRNNVDFTNDIFHIADL--GFD-KISMEPVICDPREPYALTAENLPDIYNQYEIL 267

Query: 342 KR 343
            +
Sbjct: 268 AK 269


>gi|150015896|ref|YP_001308150.1| pyruvate formate-lyase activating enzyme [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902361|gb|ABR33194.1| pyruvate formate-lyase activating enzyme [Clostridium beijerinckii
           NCIMB 8052]
          Length = 241

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 82/256 (32%), Gaps = 40/256 (15%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
           G    IE++ + +     + V  Q GC+L C +C+                         
Sbjct: 4   GNVHSIESMGLVDGPGIRVVVFLQ-GCALRCKYCHNPD---------------TWATNGG 47

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
               P     +     +        V    GEPL   + + ++L     S G++      
Sbjct: 48  EEYTPEQLVNKIERFKTYFASSGGGVTFSGGEPLRQPEFLLETLK-LCKSKGIN-----T 101

Query: 218 TLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
            + T+G+        E +     +   +   + +    +  +N    ++  +        
Sbjct: 102 CIDTAGY--GFGDYDEILKYTDLVLFDIKHFTPEGYKNITLMN----IDESLKFLE--AM 153

Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPF-----NPWPGCEYLC 328
             N  ++   +V++ G+ D       L K +  IP   K+ L+P+     N + G     
Sbjct: 154 KRNNTKMWIRHVVVPGLTDDVEHLKELKKYIDEIPNVEKVELLPYHLLGTNKYEGLGIKY 213

Query: 329 SDQKDIVTFSECIKRS 344
              +++    + + + 
Sbjct: 214 P-LENVKAMDKELIKK 228


>gi|169335672|ref|ZP_02862865.1| hypothetical protein ANASTE_02092 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258410|gb|EDS72376.1| hypothetical protein ANASTE_02092 [Anaerofustis stercorihominis DSM
           17244]
          Length = 454

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 18/139 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C+     C+L C +C+                      +  + +    +     +I +
Sbjct: 92  AMCLHVSHDCNLACRYCFASGGNFN--------------MKKEVMNIETAKKAIDFIISN 137

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231
            G K+   V    GEPL NFD VKK++  A +         R TL+T+  +     I  +
Sbjct: 138 SGNKVHLEVDFFGGEPLLNFDVVKKTVEYAKEEAKKHNKIFRFTLTTNCVLLNDEIIDYL 197

Query: 232 GEEI-GVMLAISLHAVSND 249
            +E+  V+L++      ND
Sbjct: 198 NKEMYNVVLSLDGRKEIND 216


>gi|168335509|ref|ZP_02693590.1| pyruvate formate-lyase activating enzyme [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 243

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 81/239 (33%), Gaps = 39/239 (16%)

Query: 96  CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVL 152
            IG    +E+    +       + +Q GC L C +C+   T         +  E      
Sbjct: 1   MIGKVHSVESCGTVDGPGIRYIIFTQ-GCPLRCQYCHNPDTWKG------SDGE------ 47

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                  D              + R    I + G GEPL   + V           G+  
Sbjct: 48  -----EMDSDALVKEILKYKAYMDRSNGGITISG-GEPLLQREFVTDIFKKV-KKKGI-- 98

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
                 + TSGF+P + ++G+ +     + + + + +      +        LE  +   
Sbjct: 99  ---HTCIDTSGFIP-LDKIGDILDYTDLVLLDIKSYNPA----IYKKVTGVALEPTLKFA 150

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
           +    +     +   YV++  + D+  D  +L K L  +    +I+++PF+     ++ 
Sbjct: 151 QEL--MKRNIPVWIRYVLVPDLTDNMEDIEDLAKYLITLSNVERIDILPFHKMGEYKWK 207


>gi|167748358|ref|ZP_02420485.1| hypothetical protein ANACAC_03102 [Anaerostipes caccae DSM 14662]
 gi|317472105|ref|ZP_07931437.1| pyruvate formate-lyase 1-activating enzyme [Anaerostipes sp.
           3_2_56FAA]
 gi|167652350|gb|EDR96479.1| hypothetical protein ANACAC_03102 [Anaerostipes caccae DSM 14662]
 gi|316900509|gb|EFV22491.1| pyruvate formate-lyase 1-activating enzyme [Anaerostipes sp.
           3_2_56FAA]
          Length = 241

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 81/236 (34%), Gaps = 37/236 (15%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
           +G    +E++ + +       V  Q GC+L C FC+        N    E        + 
Sbjct: 3   VGHIHSMESMGLVDGPGIRSVVFFQ-GCALRCKFCH--------NPDTWE-------FQG 46

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
                P              ++   +   G GEPL   + + K+L       G+      
Sbjct: 47  GEEMTPEALVKRISRFKPYFKQNGGVTFSG-GEPLMQPEFLLKTLK-LCKQEGI-----H 99

Query: 217 ITLSTSGFVPN--IARVGEEIGVMLAIS-LHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
             + T+GF        +     V+L +  +   + +            P+E  I+  +  
Sbjct: 100 TCIDTAGFGQGDYDEILSYTDLVLLDLKEITGPAYE-------SMTGRPMERFIEFLK-- 150

Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
               N  ++   +V++ G+ DS      L + +  IP   K+ L+P++     +Y 
Sbjct: 151 ALERNGTKLWIRHVVVPGLTDSKEHMQELKEYIDRIPNVEKVELLPYHLLGTNKYE 206


>gi|225174581|ref|ZP_03728579.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169708|gb|EEG78504.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 454

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 72/191 (37%), Gaps = 22/191 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC+     C+L C +C+ G      N             R L+      + ++ ++  S
Sbjct: 95  ALCLHLAHDCNLRCKYCFAGEGHYGGN-------------RGLMPLETAKKAVDFLLEKS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITLSTSGF-VPN--IAR 230
            GRK   I   G GEPL NF  +K ++     +      K  + T++T+   +P   +  
Sbjct: 142 KGRKHVEIDFFG-GEPLLNFQVLKDTVEY-GKARAQEMGKVLKFTVTTNALRMPGEVLEY 199

Query: 231 VGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +  E + ++L++      +D R  ++P   K   + +++ C+                  
Sbjct: 200 LNREGMSIVLSLDGREEVHD-RMRVLPGGGK-SWQRVLENCKAVVKGRGGDNYYLRGTYT 257

Query: 290 KGINDSPRDAL 300
           +   D  +D  
Sbjct: 258 RHNLDFSKDID 268


>gi|284007593|emb|CBA73174.1| pyruvate formate-lyase activating enzyme [Arsenophonus nasoniae]
          Length = 246

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 84/248 (33%), Gaps = 54/248 (21%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ +V+  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKEVVSYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236
                V    GE +   + V+     A    G+        L T+GFV    +V +E + 
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACQQQGI-----HTCLDTNGFVRRYDKVIDELLD 122

Query: 237 VM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           V   + + L  + +++   LV ++    LE        Y      ++    YV++   +D
Sbjct: 123 VTDLVMLDLKQLDDNIHKNLVGVSNHRTLE-----FARYLAKR-GQKTWIRYVVVPSWSD 176

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSEC 340
             + A  L +  + +    KI L+P++     ++                 + +      
Sbjct: 177 DDQSAHLLGQFTRDMHNIEKIELLPYHELGKHKWLAMGEEYQLADIKPPTTETMERVKHI 236

Query: 341 IKRSGYSS 348
           ++  G+  
Sbjct: 237 LQGYGHKV 244


>gi|288918994|ref|ZP_06413336.1| nitrogenase cofactor biosynthesis protein NifB [Frankia sp. EUN1f]
 gi|288349640|gb|EFC83875.1| nitrogenase cofactor biosynthesis protein NifB [Frankia sp. EUN1f]
          Length = 672

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 89/252 (35%), Gaps = 54/252 (21%)

Query: 118 VSSQVGCSLTCSFC-------YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
           V+   GC++ C++C             +  +L   E                     +  
Sbjct: 80  VAVAPGCNIQCNYCNRKYDCANESRPGVTSDLLTPE-----------------DALAKVK 122

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNI 228
           ++ S  +++S + + G G+PL N     ++L + +          ++ LST+G     ++
Sbjct: 123 LVASEIKQMSVLGIAGPGDPLANPKRTFRTLELVARD----CPDIKLCLSTNGLTLPDHV 178

Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYPLEML--------IDACRHYPGL 276
            R+ +     + I+++ +  ++   + P      +KY             ++        
Sbjct: 179 DRIADLNVDHVTITINMIDPEVGERIYPWVAYKGKKYTGREASKILSERQLEGLAMLAER 238

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGC-------EYLC 328
               ++    VM+ G+ND     + + + ++G+ A + N++P    P             
Sbjct: 239 KILAKVN--SVMIPGVND--EHLVEVSQTVRGLGAFLHNVMPLVSAPEHGTVFGLAGQRG 294

Query: 329 SDQKDIVTFSEC 340
              +++    + 
Sbjct: 295 PTPQELKALQDR 306


>gi|33152126|ref|NP_873479.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus ducreyi
           35000HP]
 gi|33148348|gb|AAP95868.1| pyruvate formate-lyase activating enzyme [Haemophilus ducreyi
           35000HP]
          Length = 244

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 84/243 (34%), Gaps = 45/243 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+       R+                          E +      +     
Sbjct: 28  GCLMRCKYCH------NRDT---------WDLEGGTKISVETLMKEVVSYKHFMKATGGG 72

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV---ML 239
           V    GE +   + V+     A  + G++       L T+GFV +   V +E+     ++
Sbjct: 73  VTASGGEAILQMEFVRDWFR-ACKAEGIN-----TCLDTNGFVRHYNAVVDEMLAVTDLV 126

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            + L  +++++   L+ ++ K      +D  R+   +         YV++ G  D    A
Sbjct: 127 ILDLKQLNDEIHQDLIGVSNK----RTLDFARYLHKIHKQT--WIRYVVVPGYTD-DDSA 179

Query: 300 LNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRSG 345
             L + ++ +    K+ L+P++     ++                ++D+      I+  G
Sbjct: 180 HKLGQFIQNMDNIEKVELLPYHRLGAHKWKTLGYKYELEDVLPPSKEDLERLKAIIESYG 239

Query: 346 YSS 348
           ++ 
Sbjct: 240 HTV 242


>gi|224367530|ref|YP_002601693.1| NifB1 [Desulfobacterium autotrophicum HRM2]
 gi|223690246|gb|ACN13529.1| NifB1 [Desulfobacterium autotrophicum HRM2]
          Length = 411

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIAR 230
                IS + + G G+P  N     ++L +  +    + L  +   +     G  P I  
Sbjct: 70  EEKENISVVGIAGPGDPFANPQETMQTLRLVREKYPDIMLCLATNGL-----GIGPYIDE 124

Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINR--------KYPLEMLIDACRHYPGLSNARRI 282
           + +     + I+++AV  D+   +    R        K  + +L+D          A  I
Sbjct: 125 LADLNVGHVTITVNAVDPDIAAKIYAWVRYKKRVRRAKEGVTILMDKQIEAIKKLKAHNI 184

Query: 283 TFEY--VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY 326
           T +   +++ G N+       + K +  +   I N IP+       +
Sbjct: 185 TVKVNTILIPGKNEG--HIEAVAKRMGELGVDIFNCIPYYQTKESHF 229


>gi|193213830|ref|YP_001995029.1| radical SAM domain-containing protein [Chloroherpeton thalassium
           ATCC 35110]
 gi|193087307|gb|ACF12582.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 316

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 48/202 (23%)

Query: 124 CSLTCSFCYTGTQKLVR---N-----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           C+  C +C        R   N     ++ +EI+ ++  A                V    
Sbjct: 27  CNWNCVYC---QLGRTRPLANERKEFVSTQEIVSEIREA----------------VCQHK 67

Query: 176 GRKISNIVMMGMGEP-LCN-----FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229
             +I  I  +G GEP L          VK    I             + + T+G + ++ 
Sbjct: 68  PSEIDWISFVGSGEPTLHAGIGRMIREVKSFTEI------------PVAVITNGSLLSLP 115

Query: 230 RVGEEIGVMLAIS--LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            V  ++     +   L A S  L   +   +        +D  + +    +  ++  E +
Sbjct: 116 EVRADLQPADTVLPTLSAGSETLFRTIHRPHPDLTFAKHVDGLKAFRDEYHG-KLWVEVM 174

Query: 288 MLKGINDSPRDALNLIKILKGI 309
           +LK +NDS  +   L  IL+ +
Sbjct: 175 LLKEVNDSEEELRKLADILRDL 196


>gi|238757610|ref|ZP_04618794.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia aldovae ATCC
           35236]
 gi|238704115|gb|EEP96648.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia aldovae ATCC
           35236]
          Length = 246

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ + +  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELVKEAVTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A    G+        L T+GFV    P I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHEEGI-----HTCLDTNGFVRRYDPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  + + +   LV ++    LE        Y    N  +    YV++ G +
Sbjct: 123 ATD-LVMLDLKQMDDSVHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D  + A  L +  + +    KI L+P++     ++                 + +     
Sbjct: 176 DDNKSAHMLGEFTQNMTNIEKIELLPYHELGKHKWVAMGEEYKLDGVKPPTAEIMDRVKG 235

Query: 340 CIKRSGYSS 348
            ++  G+  
Sbjct: 236 ILESYGHKV 244


>gi|313672572|ref|YP_004050683.1| radical sam domain protein [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939328|gb|ADR18520.1| Radical SAM domain protein [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 309

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 19/188 (10%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C +C  G    + N             R    D              +   I  + 
Sbjct: 27  CNLDCIYCEVGKTTRLTNK------------RRSFIDLDLMFKEFEQAYSHLKDHIDVVT 74

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI-S 242
           + G GEP  N D     L      +    S     L+ S  + N       + + L + S
Sbjct: 75  ITGAGEPTLNSD-----LHKIIKEIKKVISHPLALLTNSTLIDNDDVQNALMDLDLIVPS 129

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           + A+S ++   +   +++   + ++ A + +    N  +I  E + +KGIND+  +   L
Sbjct: 130 VDAISLEVIKKINKPHKRLNWDNILKALKDFSHQYNG-KIFIETLFVKGINDNEEEFNRL 188

Query: 303 IKILKGIP 310
               K + 
Sbjct: 189 ADYFKELK 196


>gi|119872955|ref|YP_930962.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM
           4184]
 gi|119674363|gb|ABL88619.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 266

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 79/231 (34%), Gaps = 53/231 (22%)

Query: 123 GCSLTCSFCYTGT----------QKLV--RNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
           GC+  C +C                L   R+LT  E++  V    S L +    E + G 
Sbjct: 22  GCNYVCPWCIRRLTPWDHHLPDAGGLKTRRHLTLGELVEVV----SGLRERGAVEAVLGG 77

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
             P+V  ++S +V    G          + + I +   G S S+  + +           
Sbjct: 78  GEPTVDPELSQVVKTLAG---------LR-VRILT--NGFSISEELLGV----------- 114

Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
           +       + +S+  +       L    +  PL  ++   +          + FE V++ 
Sbjct: 115 LRSCPACEVVVSVKTLDPA--RHLAYTGK--PLGPVLANIKRLIEA--GVAVKFETVLIP 168

Query: 291 GINDSPRDALNLIKIL---KGIPAKINLI--PFNPWPGCEYLCSDQKDIVT 336
           G+ND   D   + K +    G  A   LI  P  P PG  +     +++  
Sbjct: 169 GLND-VEDVEEIAKYIGEVAGPDAV--LIIDPLIPIPGTPWRRPAPEEVEE 216


>gi|119896814|ref|YP_932027.1| nitrogen fixation protein [Azoarcus sp. BH72]
 gi|119669227|emb|CAL93140.1| nitrogen fixation protein [Azoarcus sp. BH72]
          Length = 498

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 82/208 (39%), Gaps = 29/208 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C++C         N +   ++ +V+         P     + + + +   +++ + 
Sbjct: 66  CNIQCNYCNRKYD--CSNESRPGVVSEVM--------SPDQAVKKTLAVAAAIPQMTVLG 115

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241
           + G G+PL N +   ++    S+         ++ +ST+G     ++  + +     + I
Sbjct: 116 IAGPGDPLANPERTFETFRRLSEEA----PDIKLCVSTNGLSLPESVDELAKHNIDHVTI 171

Query: 242 SLHAVSNDLRNILVPI----NRK-YPLEMLIDACRHYPG-----LSNARRITFEYVMLKG 291
           +++ V  ++   + P     N++ + +E                 S    +    VM+ G
Sbjct: 172 TINCVDPEIGAKIYPWIFWENKRIFGVEGAKILIEQQQKGLEMLTSRGILVKVNSVMIPG 231

Query: 292 INDSPRDALNLIKILKGIPAKI-NLIPF 318
           IND       + KI+K   A + N++P 
Sbjct: 232 IND--EHLKEVSKIVKAKGAFLHNVMPL 257


>gi|28211811|ref|NP_782755.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28204253|gb|AAO36692.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 453

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 75/202 (37%), Gaps = 25/202 (12%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           E     LC++    C+L C +C+      K  R L   +I               G + I
Sbjct: 91  ESYIKALCLNIAHDCNLRCKYCFADEGEYKGKRELMTADI---------------GKKAI 135

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FV 225
           + ++  S  R    + + G GEPL  FD VK+ +  A           R T++T+G    
Sbjct: 136 DFVIKNSGPRNHIEVDLFG-GEPLIAFDTVKEIVEYAKKEEKKHNKVIRFTMTTNGTLLN 194

Query: 226 PNIARVGEEI--GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-I 282
             I +  +E    ++L+I      ND R  +   N+    + ++   +    + +  +  
Sbjct: 195 DEIMKYIDENMGNIVLSIDGRKEVND-RVRITRDNKG-SYDKILPKIKSMVKMRDKDKQY 252

Query: 283 TFEYVMLKGINDSPRDALNLIK 304
                  +   D   D ++L+ 
Sbjct: 253 YVRGTFTRENLDFFNDIMHLVN 274


>gi|326798118|ref|YP_004315937.1| radical SAM protein [Sphingobacterium sp. 21]
 gi|326548882|gb|ADZ77267.1| Radical SAM domain protein [Sphingobacterium sp. 21]
          Length = 434

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 105/286 (36%), Gaps = 47/286 (16%)

Query: 42  IYVRGIRDFQGMSDISQEVRHLL---NQHFSIIYPEIVD----EKISCDGTRKWLLRFPA 94
           +Y     +F  + ++   +R LL      ++I     +      K+  DG   +++R   
Sbjct: 19  LYNALTNNFMIIQEL---LRDLLLAAKAEYNIEGLADIHPTFYRKLIDDG---FIVRAEV 72

Query: 95  RCIGGPVEI-ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI-LLQVL 152
             +    +I E V +  K    L ++  + C+  C +CY    K   +   E+I +  V 
Sbjct: 73  DEVAKVRKIREEVDLMNKDEFILTINPTMNCNFNCWYCYESHIK---DSKMEDITIDHV- 128

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK----SLSIASDSM 208
                       + I  +V      K  +I   G GEPL  +  V K             
Sbjct: 129 -----------KDFIRNVVSERPSLKYFSIAWFG-GEPLLQYRRVVKPIQEFCKYFLSEH 176

Query: 209 GLSFSKRRITLSTSGFV--PNIARVGEEIG---VMLAISLHAVSNDLRNILVPINRKYP- 262
           G+ FS    + +T+GF+    + ++  E       + +  + V ++    +      Y  
Sbjct: 177 GIKFSA---SFTTNGFLINKEMIKLFRETNASSFQITLDGNRVLHNAVRFVNSKKGSYDE 233

Query: 263 -LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
            ++ ++  CR    ++   RI +    L+GI D   D   L  I +
Sbjct: 234 IIQNILALCRAGFFVA--LRINYTKTNLEGIEDIMEDIKGLEDIYR 277


>gi|297618477|ref|YP_003703636.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297146314|gb|ADI03071.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 468

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 80/233 (34%), Gaps = 37/233 (15%)

Query: 79  KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138
           + + D  R +L            EI      E     LC++    C+L C +C+      
Sbjct: 77  QEARD--RGYLFT--------AQEIPCFAFDEMPVKALCLNVAHKCNLRCRYCFAAQGSF 126

Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198
                 EE+L         +    G   ++ ++      K   I   G GEPL N D V+
Sbjct: 127 ----GGEEML---------MTSEVGQRAVDFLLANCGQVKNLEIDFFG-GEPLLNLDVVR 172

Query: 199 KSLSI---ASDSMGLSFSKRRITLSTSGFVPNIAR----VGEEIGVMLAISLHAVSNDLR 251
            ++      +D +G +      TL+T+  +         + E I ++L++      ND  
Sbjct: 173 DTVRYGKKCADKLGKTI---NFTLTTNAVLLTEEIMDFLLAEHIALILSLDGRQEVND-- 227

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
              V  + K   ++++          N           K   D  RD  +LI+
Sbjct: 228 ACRVSSSGKGSYDLVLPRI-QMAVAKNPHSYYVRGTFTKKNLDFGRDLEHLIE 279


>gi|313672636|ref|YP_004050747.1| radical sam domain protein [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939392|gb|ADR18584.1| Radical SAM domain protein [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 295

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 80/207 (38%), Gaps = 36/207 (17%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITLS 220
           P         + S    ++ + + G G+PL N +N  K+  +       ++S   R+ LS
Sbjct: 71  PEEAFERFKCVKSKINDLTVVGIAGPGDPLANIENTMKTFELIR-----NYSNNIRLCLS 125

Query: 221 TSG-----FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYPLEMLIDACR 271
           T+G     ++ ++ ++G E    + I+++ V   + + +        + Y      +   
Sbjct: 126 TNGLMLPYYIKDLVKLGVE---HITITINTVDEKIGSKIYRFIKFNGKTYKGVEASEILY 182

Query: 272 HYP------GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPF-NPWPG 323
                     +S    +    V++ GIND   +  ++ +++K     I N+IP  NP   
Sbjct: 183 DRQLEGLRMAVSMGLIVKINTVLIPGIND--ANIPDISRMIKREGGFIHNIIPLINPADN 240

Query: 324 CEY------LCSDQKDIV--TFSECIK 342
             Y         + K+I    F   ++
Sbjct: 241 STYFAKEKVREPEAKEIEFARFQATLE 267


>gi|238792408|ref|ZP_04636042.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia intermedia
           ATCC 29909]
 gi|238728334|gb|EEQ19854.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia intermedia
           ATCC 29909]
          Length = 246

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++ + +  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELVKEAITYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A   +G+        L T+GFV    P I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHEVGI-----HTCLDTNGFVRRYDPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  + + +   LV ++    LE        Y    N  +    YV++ G +
Sbjct: 123 ATD-LVMLDLKQMDDSVHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339
           D  + A  L +  + +    KI L+P++     ++                 + +     
Sbjct: 176 DDDKSAHMLGEFTQNMTNIEKIELLPYHELGKHKWVAMGEEYKLDGVKPPTAEIMDRVKG 235

Query: 340 CIKRSGYSS 348
            ++  G+  
Sbjct: 236 ILESYGHKV 244


>gi|308186250|ref|YP_003930381.1| pyruvate formate lyase activating enzyme 1 [Pantoea vagans C9-1]
 gi|308056760|gb|ADO08932.1| pyruvate formate lyase activating enzyme 1 [Pantoea vagans C9-1]
          Length = 246

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 75/245 (30%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         ++ E ++  VL  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--ISVEALMADVLSYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +    D+ G              + P I  + +    
Sbjct: 87  FVRDWFRACKAEG----------IHTCLDTNGF----------VRRYDPVIDELLDVTD- 125

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ I L  +++D+  ILV ++    L+        Y       R    +V++ G +D   
Sbjct: 126 LVMIDLKQMNDDVHQILVGVSNHRTLD-----FARYLQKKGK-RTWIRFVVVPGYSDDDD 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
            A  L +  + +    KI L+P++     ++                ++ +      +  
Sbjct: 180 TAHRLGEFTRDMENVEKIELLPYHELGKHKWIAMGEEYKLDGVKPPGKETMERVKNILAS 239

Query: 344 SGYSS 348
            G+  
Sbjct: 240 YGHEV 244


>gi|313893341|ref|ZP_07826915.1| six-Cys-in-45 modification radical SAM protein [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442110|gb|EFR60528.1| six-Cys-in-45 modification radical SAM protein [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 469

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 19/114 (16%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQ---KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
            LC++    C+L C +C+        + R                L+        ++ ++
Sbjct: 98  ALCLNIAHDCNLACKYCFASQGDYGGVKR---------------ELMSFDVAKRAVDFLI 142

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
             S  R+   I   G GEPL N+D VK+++              ++TL+T+G +
Sbjct: 143 KMSGPRQHCEIDFFG-GEPLLNWDVVKQTVEYIESIQEQHNKIFKLTLTTNGML 195


>gi|56476667|ref|YP_158256.1| quinohemoprotein amine dehydrogenase, putative SAM-radical
           dependentactivating subunit [Aromatoleum aromaticum
           EbN1]
 gi|56312710|emb|CAI07355.1| quinohemoprotein amine dehydrogenase, putative SAM-radical
           dependentactivating subunit [Aromatoleum aromaticum
           EbN1]
          Length = 480

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 74/235 (31%), Gaps = 35/235 (14%)

Query: 62  HLLNQHF-SIIYPEIVDEKISCDGTRKWL--LRFPARCIGGPVEIETVYIPEKSRGTLCV 118
             L Q F     PE+V + +      K L  LR           I     P     T+ +
Sbjct: 56  EELQQRFLERESPELVADAVED---LKSLGVLRSDPAVPDHGPGISVTEFPLS---TIVL 109

Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           +   GC+L+C++C         +LT              L      + +E ++     R 
Sbjct: 110 NVNTGCNLSCTYC------YKEDLTTPSKGD-------KLSLETAKQGVELLLREGAKRD 156

Query: 179 ISNIVMMGMGEPLCNFDNVKKSL------SIASDSMGLSFS-KRRITLSTSGFVPNIARV 231
             N+V  G GEPL N   V +++          +  GL  S     TL T   V      
Sbjct: 157 RVNVVFFG-GEPLTNMP-VIRAVTAYAEQRCREEGKGLDLSLTTNATLLTEEIVDYFNE- 213

Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPL--EMLIDACRHYPGLSNARRITF 284
               G+ +++      +D R   +     Y +           Y       R+T 
Sbjct: 214 -HRFGISISMDGPQAIHDKRRKTIGGKGTYEVVAAKTRMLLSRYTSRPVGARVTL 267


>gi|332364333|gb|EGJ42107.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK355]
          Length = 267

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 80/267 (29%), Gaps = 81/267 (30%)

Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           GC L C +C                    + T    R  + EEI+ +VL  R    +  G
Sbjct: 39  GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
              + G  I +                        K++  A+   G+        + T+ 
Sbjct: 97  GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132

Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           FV +  +  + I     +   L       H     ++N L+  N  Y             
Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY------- 326
             ++ + I     ++   NDS  DA     +   +    + L+PF+ +   +Y       
Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSINQVQLLPFHQFGENKYKLLGRKY 238

Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348
                     +D+  + +   + G + 
Sbjct: 239 AMEDVKALHPEDLFEYQDVFLKHGINC 265


>gi|298368431|ref|ZP_06979749.1| pyruvate formate-lyase 1-activating enzyme [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282434|gb|EFI23921.1| pyruvate formate-lyase 1-activating enzyme [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 253

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 87/254 (34%), Gaps = 70/254 (27%)

Query: 123 GCSLTCSFCYTGTQKLVRN-----------LTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
           GC + C +C+       R+           +T E+++ QV+  R  L    G     G  
Sbjct: 34  GCLMRCLYCH------NRDTWDFHTDKCQEMTVEQVMKQVMSYRHYLEATGGGVTATGG- 86

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKK---SLSIASDSMGLSFSKRRITLSTSGFVPNI 228
                            EPL  ++ V+    +        G+        L T+G+  + 
Sbjct: 87  -----------------EPLLQYEFVRDWFTACR----EHGI-----HTCLDTNGYALHY 120

Query: 229 ARVGEEI--GVMLAI-SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
             + E++     L +  L  +  ++  +LV      P    ++  RH      + R+   
Sbjct: 121 DSILEDLLDHTNLVMLDLKQIDPEIHKVLV----GIPNTKTLNFARHLAERGQSTRV--R 174

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNP-------WPGCEYL-----CSDQ 331
           YV++ G  D  R A  L   +  +     + L+P++          G EY         +
Sbjct: 175 YVIVPGYTDDERSAHLLGGFIGDMENVGAVELLPYHELGAHKWALCGDEYKLKGVHPPPK 234

Query: 332 KDIVTFSECIKRSG 345
           + ++   E ++  G
Sbjct: 235 EVVLKIKEILEGYG 248


>gi|212697129|ref|ZP_03305257.1| hypothetical protein ANHYDRO_01695 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675904|gb|EEB35511.1| hypothetical protein ANHYDRO_01695 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 461

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 77/224 (34%), Gaps = 27/224 (12%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
            +     +C++    C+L+C +C+       R    E I          + D    + I+
Sbjct: 91  RKTYLKAMCLNVSHTCNLSCEYCFAKEG---RYHGPEAI----------MTDEVAKKSID 137

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFV-- 225
            ++  S      +I   G GEPL N+D VK ++  A       +      TL+T+G +  
Sbjct: 138 FLLENSGSHYNLDIDFFG-GEPLLNWDLVKNTVDYARSKEEEFN-KHFNFTLTTNGMLLD 195

Query: 226 -PNIARVGEEIG-VMLAISLHAV-SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
              I  + E +  V+L++       ++ R      + +   + ++   +        +  
Sbjct: 196 DEKIEYLNENMKNVVLSLDGRKEKHDEFRK---THDGRGSFDKIVPKFQKLVKARGDKEY 252

Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
                      D   D    + +  G   + +L P       +Y
Sbjct: 253 YMRGTFTANNLDFTEDIKTYLDL--GFK-RTSLEPVVGNNEEDY 293


>gi|1171708|sp|P46044|NIFB_FRAAL RecName: Full=FeMo cofactor biosynthesis protein nifB
 gi|1084248|pir||JC4208 nitrogenase NifB chain - Frankia sp
 gi|497436|gb|AAC82975.1| NifB [Frankia alni]
          Length = 510

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 86/246 (34%), Gaps = 36/246 (14%)

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           V+   GC++ C+FC        R         +     +     P     +  V+ S  +
Sbjct: 69  VAVAPGCNIQCNFC-------NRKFDCA---NESRPGVTSTLLTPEDALAKVNVVASEIK 118

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEI 235
           ++S + + G G+PL N     +++ + +          ++ LST+G      + R+ +  
Sbjct: 119 QMSVLGIAGPGDPLANPKPTFRTIELVARD----CPDIKLCLSTNGLRLPEFVDRIADLN 174

Query: 236 GVMLAISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPGL------SNARRITFE 285
              + I+++ +  ++   + P      ++Y                              
Sbjct: 175 VDHVTITINMIDPEVGERIYPWVAWRGKRYTGREASKILSEQQLAGLAALTERKILCKVN 234

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPG-------CEYLCSDQKDIVTF 337
            VM+ GIND     + + + +KG+ A + N++P    P                +++   
Sbjct: 235 SVMIPGIND--EHLVEVSRTVKGLGAFLHNVMPLVSAPEHGTVFGLTGQRGPTPQELKAL 292

Query: 338 SECIKR 343
            +  ++
Sbjct: 293 QDRCEQ 298


>gi|116753736|ref|YP_842854.1| radical SAM domain-containing protein [Methanosaeta thermophila PT]
 gi|116665187|gb|ABK14214.1| Radical SAM domain protein [Methanosaeta thermophila PT]
          Length = 299

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 82/246 (33%), Gaps = 55/246 (22%)

Query: 124 CSLTCSFC-------YTGTQKLV-RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           C++ C +C             +  R LT +E L +V                    + S 
Sbjct: 49  CNIQCKYCIRDFDCVNESRPGVTSRVLTPQEALERV------------------DEVLSK 90

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGE 233
              I  + + G GEPL N +   ++L +  +          + +ST+G      I  +  
Sbjct: 91  YHYIKVVAVAGPGEPLAN-EETFETLRLVGEKY----PHLILCISTNGLLLPDRIEDLDR 145

Query: 234 EIGVMLAISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARR 281
                + ++L+AV   +   +                 K  L+  +             +
Sbjct: 146 IGVTNITVTLNAVDPTIGEQIYDYVIYKGERYEGLEAAKILLDNQLKGIEEAVRRKKIVK 205

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTF 337
           +    V++ GIND  +   ++ + +K +   I N++P    P  ++        ++    
Sbjct: 206 VNT--VLIPGIND--KHVFDIARKIKSMGVFIHNVMPL--IPQYKFAHIKPPTPEEKRAI 259

Query: 338 SECIKR 343
            + + +
Sbjct: 260 QDELSK 265


>gi|188579343|ref|YP_001922788.1| radical SAM domain protein [Methylobacterium populi BJ001]
 gi|179342841|gb|ACB78253.1| Radical SAM domain protein [Methylobacterium populi BJ001]
          Length = 367

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 12/146 (8%)

Query: 225 VPNIARVGEEIGV----MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
            P+  R  E +       L I L AV+ ++R  ++P      LE    A      L    
Sbjct: 209 PPDDDRWFERMKASGIDALGIHLEAVTPEVRARIMPGKASVTLERYQAAFEAAVPLFGRG 268

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTF 337
           +++  Y++  G+ D+P   L + + L  I     ++PF P  G             +   
Sbjct: 269 QVS-TYIL-AGLGDTPEAILAMAERLIAIGVYPFVVPFVPISGTPLESHPAPSPAFMHAI 326

Query: 338 SECIKRSGYSSPIRTPRGLDILAACG 363
            E +      + +R+    DI A CG
Sbjct: 327 LEPLAAMLTGADLRST---DIKAGCG 349


>gi|21674359|ref|NP_662424.1| NifB protein [Chlorobium tepidum TLS]
 gi|21647536|gb|AAM72766.1| nifB protein [Chlorobium tepidum TLS]
          Length = 424

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 88/235 (37%), Gaps = 29/235 (12%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C++C      +  N     I  +VL         P            +   IS + 
Sbjct: 30  CNIQCNYCNRKFDCMNEN-RPG-ITSKVL--------SPRQALYYLDNALKLSPNISVVG 79

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLAI 241
           + G G+P  N +   ++L +  +       +  + ++T+G   +P I  + E     + +
Sbjct: 80  IAGPGDPFANPEETMETLRLVREKY----PEMLLCVATNGLDMLPYIEELAELQVSHVTL 135

Query: 242 SLHAVSNDLRNILVPINR--------KYPLEMLIDACRHYPGLSNARRIT--FEYVMLKG 291
           +++A+  ++   +    R        +   E+L++             +T     +++ G
Sbjct: 136 TINAIDPEIGQEIYAWVRYQKKMYRDRQAAELLLENQLAALQKLKRYGVTAKVNSIIIPG 195

Query: 292 INDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
           +ND  +  + + + +  + A I N +P+       +    + D +   +  + +G
Sbjct: 196 VND--QHVIEVARQVASMGADILNALPYYNTTETVFENIPEPDPMMVRKIQEEAG 248


>gi|237736168|ref|ZP_04566649.1| Fe-S oxidoreductase [Fusobacterium mortiferum ATCC 9817]
 gi|229421721|gb|EEO36768.1| Fe-S oxidoreductase [Fusobacterium mortiferum ATCC 9817]
          Length = 276

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 68/192 (35%), Gaps = 29/192 (15%)

Query: 124 CSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           C++ C FC    T    L R                        E  E +       K  
Sbjct: 28  CNMNCIFCECGATKKLTLKR-----------------ERFKDPEEVKEEIKEVLKKIKPD 70

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM-- 238
            I   G GEP  + D + + +    +         ++ + T+G +    +V E+I     
Sbjct: 71  YITFSGSGEPTLSKD-IGEIIDWIKEHT-----DVKVCVITNGLLLEDGKVIEDIKKADL 124

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           +  +L++V N +   +   + +  +  ++   R+         I  E  +++G+NDS   
Sbjct: 125 IIPTLNSVDNLIFKKINRPSVESDISQVMGGLRN-LSEKYRGEIYIETFIIEGLNDSDEH 183

Query: 299 ALNLIKILKGIP 310
              ++K LK + 
Sbjct: 184 TERMVKFLKNLK 195


>gi|331269973|ref|YP_004396465.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
           BKT015925]
 gi|329126523|gb|AEB76468.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
           BKT015925]
          Length = 239

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 82/241 (34%), Gaps = 39/241 (16%)

Query: 93  PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152
            +  IG     E++ + +       V  Q GC L CSFC+                    
Sbjct: 3   ESNLIGRIHSFESMGLVDGPGIRNVVFFQ-GCPLRCSFCHNPD---------------TW 46

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                    P     + +      +    +   G GEPL     + ++L +  ++     
Sbjct: 47  DFNGGYEISPEDLVKKIIRFKPYFKNNGGVTFSG-GEPLMQPKFLLEALKLCKENN---- 101

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNIL--VPINRKYPLEMLID 268
                 + TSG+      + E +     + + +  +       L  V IN+ +    +++
Sbjct: 102 --IHTAIDTSGY--GSEYLDELLKFTDLIILDIKHIDEHNFKSLTGVSINKLFNFIAILN 157

Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY 326
                    +  R+   +V++ GI DS     +L  I+K I    KI L+P++     +Y
Sbjct: 158 --------KSKCRVWIRHVVIPGITDSIEHIESLKSIIKTIRNVDKIELLPYHTLGSHKY 209

Query: 327 L 327
            
Sbjct: 210 E 210


>gi|332982863|ref|YP_004464304.1| pyruvate formate-lyase activating enzyme [Mahella australiensis
           50-1 BON]
 gi|332700541|gb|AEE97482.1| pyruvate formate-lyase activating enzyme [Mahella australiensis
           50-1 BON]
          Length = 243

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 82/268 (30%), Gaps = 45/268 (16%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL-LQVLLARS 156
           G    IET+   +       V  Q GC L C +C+        N    ++   +++    
Sbjct: 5   GRIHSIETMGTVDGPGIRYVVFMQ-GCPLRCKYCH--------NRDTWDMSHGRIMSVDE 55

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
           L+ D    ++                V +  GEP   +  V +                 
Sbjct: 56  LMQDIKKYKNFMKYSGGG--------VTLTGGEPTLQWRFVAELFRRCKTE------GIH 101

Query: 217 ITLSTSGFVPNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
             L TSGFV +I R    +    L +      + +R+  +        +  +   +H   
Sbjct: 102 TALDTSGFV-DIERADTFLPYTDLVLLDIKEIDPVRHTELTGVSN---DKTLAFAQHLSE 157

Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC----- 328
           L         YV++ G  D P D  +L + +  +     + ++P++     ++       
Sbjct: 158 L--HIPTWIRYVLVPGYTDDPDDIRSLGRFISRLSNVELVEILPYHTMGVYKWEQLCVDY 215

Query: 329 -------SDQKDIVTFSECIKRSGYSSP 349
                     +      + ++    S  
Sbjct: 216 PLKDVPVPTDEQAEAARKILRDFNISVR 243


>gi|257066501|ref|YP_003152757.1| Radical SAM domain-containing protein [Anaerococcus prevotii DSM
           20548]
 gi|256798381|gb|ACV29036.1| Radical SAM domain protein [Anaerococcus prevotii DSM 20548]
          Length = 460

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 45/277 (16%)

Query: 42  IYVRGIRDFQGMSDI------SQE---VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92
           IY   +     ++        S++   +R  + + + I   +  +         K     
Sbjct: 16  IYSGSVHAVDDVTYDIIEKYESKDKEDIRKKIIEKYEISNDQFEEAYAE----VK---EL 68

Query: 93  PARCIGGPVEI-ETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
               +    +I E + I   +R T    LC++    C+L+C +C+    K       + I
Sbjct: 69  EDEGLLFTDDIYEDLSIDITNRPTTIKALCLNVAHTCNLSCEYCFAKGGKYSG---PDAI 125

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD- 206
                     +      + I+ ++  S      +I   G GEPL NF  VK+++  A   
Sbjct: 126 ----------MTIDVAKKAIDFLLANSGSHYNLDIDFFG-GEPLLNFALVKETVDYARSK 174

Query: 207 SMGLSFSKRRITLSTSGFV---PNIARVGEEIG-VMLAISLHAV-SNDLRNILVPINRKY 261
               +      TL+T+G +     I  + E +  V+L++       +  R  L   N K 
Sbjct: 175 EEEFN-KHFNFTLTTNGLLLDDEVIDYLNENMKNVVLSLDGRKEKHDQFRKTL---NGKG 230

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
             + ++   +++      +             D   D
Sbjct: 231 SYDAIVPKFQNFVKKRGDKEYYMRGTFTANNLDFTED 267


>gi|145220155|ref|YP_001130864.1| nitrogenase cofactor biosynthesis protein NifB [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206319|gb|ABP37362.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium
           phaeovibrioides DSM 265]
          Length = 420

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 63/179 (35%), Gaps = 19/179 (10%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
           PG           +   IS + + G G+P  N D   ++L +          +  + ++T
Sbjct: 58  PGQALHYLKAAVELSPNISVVGIAGPGDPFANPDETMETLRLVRKEY----PEMLLCVAT 113

Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY-PLEMLIDACRHYPG--- 275
           +G   +P I  + E     + I+++A+   +   +    R    +   I+A     G   
Sbjct: 114 NGLNLLPYIDELAELEVSHVTITINAIDPAVGAEIYAWVRHEKKMHRDIEAAELLIGKQL 173

Query: 276 ------LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327
                  +         +++ G+ND       + + +  + A I N +P+       + 
Sbjct: 174 EGLKELKARGITAKVNTIIIPGVNDH--HVETVARTVASLGADILNCLPYYNTKETVFE 230


>gi|305390399|gb|ADM52724.1| NifB [Paenibacillus sabinae]
          Length = 458

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 87/246 (35%), Gaps = 46/246 (18%)

Query: 124 CSLTCSFCYTGTQKLVR-----NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           C++ C++C        R     N +   ++ +VL         P   + +   + +   +
Sbjct: 42  CNIQCNYC-------NRKFDCVNESRPGVVSEVLT--------PEQAERKVKGVAAQLMQ 86

Query: 179 ISNIVMMGMGEPLCNFDNVKK-SLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI 235
           +S + + G G+PL N D        +      + L  S   +TL       +I R+ E  
Sbjct: 87  LSVVGIAGPGDPLANADKTFDTFARVRKHVPDVMLCLSTNGLTLY-----RHIDRIVELG 141

Query: 236 GVMLAISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPGL------SNARRITFE 285
              + I+++A+  D+   + P       +Y                          +   
Sbjct: 142 INHVTITINAIDPDVGKEIYPWVFDEGVRYEGREAAALLISRQLQGVEALAKQGILVKVN 201

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY-----LCSDQKDIVTFSE 339
            +M+ G+ND  +  + + K +K + A + N+ P    PG +Y          +++    +
Sbjct: 202 SIMIPGVND--QHLVEVSKKVKELGATLHNVTPLIIAPGSQYEKDGRKAPRPRELNALQQ 259

Query: 340 CIKRSG 345
            +   G
Sbjct: 260 QLSEGG 265


>gi|325263731|ref|ZP_08130464.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
           D5]
 gi|324030769|gb|EGB92051.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
           D5]
          Length = 308

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 83/272 (30%), Gaps = 62/272 (22%)

Query: 122 VGCSLTCSFC------------YTGTQKLVR-------NLTAE---EILLQVLLARSLLG 159
           VGC L    C                   VR       N       E+ LQ   A  + G
Sbjct: 55  VGCMLCAKVCPHDAVTAYETKEEAEAFGFVRHDREKCDNCETHDCVEMCLQ--NALDITG 112

Query: 160 DFPGCEDIEGMVIPSVGRKISN--IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
            +   +DI   V            I + G G+PL   D V + L       G++      
Sbjct: 113 KWMTVDDIMEKVHRDASYYAGKGGITLSG-GDPLVYADFVTELLRRCKSE-GIN------ 164

Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL-----EMLIDACRH 272
           T+  S        +     VM  I L+         ++   +   +     + +++  R 
Sbjct: 165 TVLESELCVPARSL---EKVMPYIDLYLTD----IKIIDDQKHIEMTGVTNKQILENLR- 216

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLC-- 328
             G +   +      ++ G  DS  +   + K  K  G  A++N++P++     ++    
Sbjct: 217 LIGRTCPEKACLRCPIIPGCTDSDENIHAIGKFCKENGF-ARVNILPYHKLGTTKHERLG 275

Query: 329 ----------SDQKDIVTFSECIKRSGYSSPI 350
                        + +   ++ ++       I
Sbjct: 276 SVYPLPDVQAPSDEQMQHVADILESYKIDCII 307


>gi|312868229|ref|ZP_07728429.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           parasanguinis F0405]
 gi|311095974|gb|EFQ54218.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           parasanguinis F0405]
          Length = 264

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 64/255 (25%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +       R  T +++L + L  R   G+  G              
Sbjct: 37  GCQMRCQYCHNPDTWAMETNKSRERTVDDVLEEALRYRGFWGEKGG-------------- 82

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVG 232
               I + G GE L   D +   +++ + +  L       TL T           + +  
Sbjct: 83  ----ITVSG-GEALLQIDFL---IALFTKAQELGI---HCTLDTCALPFRNTPRYLEKFD 131

Query: 233 EEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
             + V  L +      ND R+ +V  +        I AC  Y      + +   +V++ G
Sbjct: 132 RLMAVTDLVLLDIKEINDERHKIVTSHTN----KTILACAKYLS-DIGKPVWIRHVLVPG 186

Query: 292 INDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDI--- 334
           + D   D + L K +K +    K  ++P++     ++                ++ +   
Sbjct: 187 LTDRDDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWRELGIPYKLEGVKPPTKERVQNA 246

Query: 335 ------VTFSECIKR 343
                  ++ + +KR
Sbjct: 247 KDLMETESYQDYLKR 261


>gi|158318603|ref|YP_001511111.1| nitrogenase cofactor biosynthesis protein NifB [Frankia sp.
           EAN1pec]
 gi|158114008|gb|ABW16205.1| nitrogenase cofactor biosynthesis protein NifB [Frankia sp.
           EAN1pec]
          Length = 655

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 84/230 (36%), Gaps = 47/230 (20%)

Query: 118 VSSQVGCSLTCSFC-------YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
           V+   GC++ C++C             +  +L   E                     +  
Sbjct: 84  VAVAPGCNIQCNYCNRKYDCANESRPGVTSDLLTPE-----------------DALAKVK 126

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNI 228
           ++ S  +++S + + G G+PL N     ++L + +          ++ LST+G     ++
Sbjct: 127 LVASEIKQMSVLGIAGPGDPLANPKRTFRTLELVARD----CPDIKLCLSTNGLTLPDHV 182

Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYPLEML--------IDACRHYPGL 276
            R+       + I+++ +  ++   + P      +KY             ++        
Sbjct: 183 DRIAALNVDHVTITINMIDPEVGERIYPWVAYKGKKYTGREASKILSERQLEGLAMLAER 242

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325
               ++    VM+ G+ND     + + K ++G+ A + N++P    P   
Sbjct: 243 KILAKVN--SVMIPGVND--EHLVEVSKTVRGLGAFLHNVMPLVSAPEHG 288


>gi|221198785|ref|ZP_03571830.1| radical SAM domain protein [Burkholderia multivorans CGD2M]
 gi|221181236|gb|EEE13638.1| radical SAM domain protein [Burkholderia multivorans CGD2M]
          Length = 370

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 16/143 (11%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+       L + L AV+  +R  ++P     PL   + A R   G+    +++  Y+
Sbjct: 224 FDRMKASGIDTLGMHLEAVTPAVRERIMPGKASVPLSRYMAAFRAAVGVFGRGQVS-TYI 282

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSE----C 340
           +  G+ DS    L++ + L G+     ++PF P  G             +    E     
Sbjct: 283 L-AGLGDSAAAILDMSRELIGLGVYPFVVPFVPISGTPLESHPAPSPDFMRAVLEPLGAM 341

Query: 341 IKRSGYSSPIRTPRGLDILAACG 363
           ++ +G        R  DI A CG
Sbjct: 342 LRDAGM-------RSADIKAGCG 357


>gi|221205046|ref|ZP_03578062.1| radical SAM domain protein [Burkholderia multivorans CGD2]
 gi|221174837|gb|EEE07268.1| radical SAM domain protein [Burkholderia multivorans CGD2]
          Length = 356

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 16/143 (11%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+       L + L AV+  +R  ++P     PL   + A R   G+    +++  Y+
Sbjct: 210 FDRMKASGIDTLGMHLEAVTPAVRERIMPGKASVPLSRYMAAFRAAVGVFGRGQVS-TYI 268

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSE----C 340
           +  G+ DS    L++ + L G+     ++PF P  G             +    E     
Sbjct: 269 L-AGLGDSAAAILDMSRELIGLGVYPFVVPFVPISGTPLESHPAPSPDFMRAVLEPLGAM 327

Query: 341 IKRSGYSSPIRTPRGLDILAACG 363
           ++ +G        R  DI A CG
Sbjct: 328 LRDAGM-------RSADIKAGCG 343


>gi|15601942|ref|NP_245014.1| pyruvate formate lyase-activating enzyme 1 [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|12720286|gb|AAK02161.1| Act [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 246

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 79/240 (32%), Gaps = 44/240 (18%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T      + +T EE++ +V+  R  +    G     G         +
Sbjct: 29  GCLMRCQYCHNRDTWDLHAGKEITVEELMKEVVTYRHFMNASGGGVTASGGEAVLQAEFV 88

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
            +                  +        G+        L T+GFV N   V +E+  + 
Sbjct: 89  RD---------------WFSACK----KEGI-----HTCLDTNGFVRNYDHVIDELLDVT 124

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            + L  +   L + +       P +  ++    Y    N   +   YV++ G  D+  D 
Sbjct: 125 DLVLLDLKQ-LNDKIHQNLIGVPNKRTLEFA-QYLAKRNQ-PVWIRYVVVPGYTDADEDI 181

Query: 300 LNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRSG 345
             L   +K +    K+ L+P++     ++                ++ +      ++  G
Sbjct: 182 HLLGHFIKDMKNIEKVELLPYHRLGAHKWEAMGEKYELEEVNPPTKESLEHIKSILESYG 241


>gi|146329598|ref|YP_001210199.1| pyruvate formate-lyase activating enzyme [Dichelobacter nodosus
           VCS1703A]
 gi|146233068|gb|ABQ14046.1| pyruvate formate-lyase activating enzyme [Dichelobacter nodosus
           VCS1703A]
          Length = 249

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 75/246 (30%), Gaps = 46/246 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+       R+          L               E        R     
Sbjct: 30  GCLMRCLYCH------NRDSWP-------LTTDKSEVTTVSKLMQEIKTYQHYLRASGGG 76

Query: 183 VMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFV----PNIARVGEEIGV 237
           V    GEPL         +    +    ++       L T+GF      ++ R+ +    
Sbjct: 77  VTASGGEPLLQH----AFIADWFTACQEMNL---HTCLDTNGFARQYDHDLIRLLDHTD- 128

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  ++ +   +LV      P +  ++  R+        R+   YV++   +D   
Sbjct: 129 LVMLDLKQINPEKHKVLV----GVPNDKTLNFARYLQERGQKVRV--RYVVVPQYSDDED 182

Query: 298 DALNLIKILKGIPAK--INLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
            A  L K ++ +     + L+P++     ++                 + +    E ++ 
Sbjct: 183 SAHLLGKFIEPMENVLEVELLPYHELGSHKWALFGDTNKLAGIHPPKPETMKKIKEILES 242

Query: 344 SGYSSP 349
            G    
Sbjct: 243 YGKPVF 248


>gi|124485502|ref|YP_001030118.1| hypothetical protein Mlab_0679 [Methanocorpusculum labreanum Z]
 gi|124363043|gb|ABN06851.1| Radical SAM domain protein [Methanocorpusculum labreanum Z]
          Length = 310

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 40/221 (18%)

Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           C++ C++C          R     EIL             PG        + S  + I  
Sbjct: 51  CNIQCNYCVRDYDCVNESRPGVTSEILA------------PGDALERIDEVVSRMKHIKV 98

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239
           + + G G+PL N +   ++L +  +          + +ST+G      I  + +     +
Sbjct: 99  VGIAGPGDPLAN-EETFETLRLVHEKY----PDVILCISTNGLLLPEKIDILEKYGVRNI 153

Query: 240 AISLHAVSNDLRNILVPI----NRKYP--------LEMLIDACRHYPGLSNARRITFEYV 287
            ++L+A+   +   +        +KY         L+  +             +I   Y 
Sbjct: 154 TVTLNAIDPAIGEKIYTFVEYGGKKYHGREAAELLLKNQMKGIEEAVKRKMLVKINTVY- 212

Query: 288 MLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL 327
            + G+ND  +    + K +  +     N+IP    P  ++ 
Sbjct: 213 -IPGVND--QHIPEIAKKVGAMGVFNFNIIPL--IPQYKFK 248


>gi|322390044|ref|ZP_08063580.1| pyruvate formate-lyase activating enzyme [Streptococcus
           parasanguinis ATCC 903]
 gi|321143251|gb|EFX38693.1| pyruvate formate-lyase activating enzyme [Streptococcus
           parasanguinis ATCC 903]
          Length = 264

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 79/250 (31%), Gaps = 54/250 (21%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N     +                    E +       +   I
Sbjct: 37  GCQMRCQYCH--------NPDTWAM-----ETNKSRERTVDDVLEEALRYRGFWGQKGGI 83

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237
            + G GE L   D +   +++ + +  L       TL T           + +    + V
Sbjct: 84  TVSG-GEALLQIDFL---IALFTKAQELGI---HCTLDTCALPFRNTPRYLEKFDRLMAV 136

Query: 238 M-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             L +      ND R+ +V  +        I AC  Y      + +   +V++ G+ D  
Sbjct: 137 TDLVLLDIKEINDERHKIVTSHTN----KTILACAKYLS-DIGKPVWIRHVLVPGLTDRD 191

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDI-------- 334
            D + L K +K +    K  ++P++     ++                ++ +        
Sbjct: 192 DDLIELGKFVKTLKNVDKFEILPYHTMGEFKWRELGIPYKLEGVKPPTKERVQNAKDLME 251

Query: 335 -VTFSECIKR 343
             ++ + +KR
Sbjct: 252 TESYQDYLKR 261


>gi|224418860|ref|ZP_03656866.1| hypothetical protein HcanM9_06250 [Helicobacter canadensis MIT
           98-5491]
 gi|253828153|ref|ZP_04871038.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142377|ref|ZP_07804570.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511559|gb|EES90218.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131408|gb|EFR49025.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 307

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 75/249 (30%), Gaps = 61/249 (24%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C +C    +      + +EIL                            + I ++ 
Sbjct: 28  CNYDCLYC--ELEGKKAQDSMQEILE------------VDTILTAIKEALDKFKNIQSLT 73

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI-- 241
           +   GEP   + N+ + +    D  G           T   +     +  ++ V  A   
Sbjct: 74  ITANGEPTL-YPNLYELMLRLEDIKG----------DTQTLLLTNGSLLWDLSVSRACLL 122

Query: 242 ------SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
                 SL A+S ++   +    +   LE ++     +     +  +  E + +KG+ND 
Sbjct: 123 FDKVKFSLDAISQEIFKKIDRPIKNISLEQILQGIYQFSA-DFSGELYAEILFVKGVNDD 181

Query: 296 PRDALNLIKILKGIPAK--------------INLIPFNPWPGCEYLCSDQKDIVTFSECI 341
           P++   + + L  +  K              +N I              Q+ +  F    
Sbjct: 182 PKEVQKMARFLAPMQLKRLDIGSIDRPPAYRVNPI-------------SQESLENFEAIF 228

Query: 342 KRSGYSSPI 350
           K  G    +
Sbjct: 229 KSYGIPVFL 237


>gi|70607089|ref|YP_255959.1| tRNA-modifying enzyme [Sulfolobus acidocaldarius DSM 639]
 gi|68567737|gb|AAY80666.1| conserved protein [Sulfolobus acidocaldarius DSM 639]
          Length = 358

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 221 TSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
           TSG  P+I    EE    L +S+ A +     I+         E+ ++  +  P  S   
Sbjct: 170 TSGVRPDILASLEEEPTQLFVSIQAPNYKKHKIMNRPIVPNSWELFLETLKILPSFS--S 227

Query: 281 RITFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEYL-----CSDQKDI 334
                  M+KG N S  DA +  K+++   P  I +  +       Y           +I
Sbjct: 228 PTVIRMTMIKGYNMSEEDAKDFAKLIELSQPTYIEVKSYMHVGPSTYRLTKDAMPKHNEI 287

Query: 335 VTFSECIKRS 344
             FS+ +   
Sbjct: 288 REFSKILANY 297


>gi|226947090|ref|YP_002802163.1| nitrogenase cofactor biosynthesis protein [Azotobacter vinelandii
           DJ]
 gi|226722017|gb|ACO81188.1| Nitrogenase cofactor biosynthesis protein [Azotobacter vinelandii
           DJ]
          Length = 503

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 75/217 (34%), Gaps = 33/217 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C +C         N +   ++ +VL         P     +   + +   ++S + 
Sbjct: 67  CNIQCHYCNRKYD--CANESRPGVVSEVLT--------PEQAVKKVKAVAAAIPQMSVLG 116

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241
           + G G+PL N      +  + S+         ++ +ST+G      +  + +     + I
Sbjct: 117 IAGPGDPLANPKRTLDTFRMLSEQA----PDIKLCVSTNGLALPECVEELAKHNIDHVTI 172

Query: 242 SLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +++ V  ++   + P               K  +E                 +    VM+
Sbjct: 173 TINCVDPEIGAKIYPWIYWNNKRIRGVKAAKILIEQQQKGLEMLVAR--GILVKVNSVMI 230

Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325
            G+ND       + KI+K   A + N++P    P   
Sbjct: 231 PGVND--EHLKEVSKIVKAKGAFLHNVMPLIAEPEHG 265


>gi|110802629|ref|YP_698492.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           SM101]
 gi|168211839|ref|ZP_02637464.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens B
           str. ATCC 3626]
 gi|168218087|ref|ZP_02643712.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           NCTC 8239]
 gi|110683130|gb|ABG86500.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           SM101]
 gi|170710218|gb|EDT22400.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens B
           str. ATCC 3626]
 gi|182379907|gb|EDT77386.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           NCTC 8239]
          Length = 235

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 87/235 (37%), Gaps = 36/235 (15%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154
           G    +ET+ + +       V  Q GC + C+FC+   T  +      T EE++ ++   
Sbjct: 4   GRIHSLETMGLVDGPGIRFVVFMQ-GCGIRCAFCHNPDTWCKDKGTEYTPEELVNKIKRF 62

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
           ++      G                  +   G GEPL   + + + L       G+    
Sbjct: 63  KTYFNASGGG-----------------VTFSG-GEPLLQPEFLLECLK-LCKKEGI---- 99

Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
              TL T+G          E   ++   +     +    LV    + P++  ++  +   
Sbjct: 100 -HTTLDTAGVGLGNYEEILEYVDLILFDVKETDPEKYKNLV----RVPIDKSLEFLK--V 152

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             S  +++   +V++ G  D+  D + + K + G+    K+ L+P++     +Y 
Sbjct: 153 AQSMNKKMWIRHVVVPGYTDNKEDLMRIKKFVDGLNNIEKVELLPYHVLGVNKYE 207


>gi|315427179|dbj|BAJ48793.1| tRNA-modifying enzyme [Candidatus Caldiarchaeum subterraneum]
          Length = 337

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 72/239 (30%), Gaps = 39/239 (16%)

Query: 124 CSLTCSFCYTGTQKLVRNL-------TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           C++ C FC+     L R           EEIL +++  +  L    G             
Sbjct: 79  CNMMCVFCW-RFHTLNRVQPYDGEWDKPEEILERMIAEQRQLLSGFGGNPNVSKERFREA 137

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
            +  +I +   GEP   +  + + + +AS             ++       +  + ++  
Sbjct: 138 MEPMHIAISLDGEPTL-YPYLAEFIQLASSR-----GMTTFLVTNGTMPERLEELLQKAQ 191

Query: 237 VM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND- 294
              L ISL+    +          K   E L+ +       S   R      ++K +N  
Sbjct: 192 PTSLYISLYGPDKETHVKTCKPLIKDSWERLLKSLELMGRFSC--RKIIRLTLVKDVNMH 249

Query: 295 SPRDALNLIK-------ILKGIPAKINLIPFNPWPGCEYL-----CSDQKDIVTFSECI 341
           SP     LI+         KG         +      +           ++I  F+  +
Sbjct: 250 SPEKYGALIRNASPDFVECKG---------YTHVGESQLRLKKENMPSLEEINKFAAEL 299


>gi|228990331|ref|ZP_04150297.1| Radical SAM domain protein [Bacillus pseudomycoides DSM 12442]
 gi|228769407|gb|EEM18004.1| Radical SAM domain protein [Bacillus pseudomycoides DSM 12442]
          Length = 468

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 86/242 (35%), Gaps = 27/242 (11%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
            +     LC++    C+L+C +C+    K   +             R+++    G   I+
Sbjct: 94  RQTYVKALCLNVAHTCNLSCEYCFASQGKYNGS-------------RAIMSYEVGKRAID 140

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--P 226
            ++  S   +  +I   G GEPL  +  VK+ ++ A           R T +T+G +   
Sbjct: 141 YLLENSGHHRNLDIDFFG-GEPLMAWKVVKQIVAYARSKEKEYKKTFRFTFTTNGMLLND 199

Query: 227 NIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
            I     +    + +SL     V + LR     +  K   E ++   + +      +   
Sbjct: 200 EITDFLNKEMYNVVLSLDGRKEVHDHLRK---TVTGKGSYEYIVPKFQEFVKSRGDKEYY 256

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECI 341
                     D   D  ++  +  G   K+++ P    P   Y  +++   DI    E +
Sbjct: 257 VRGTYTHNNVDFTNDIFHIADL--GFD-KLSMEPVICNPREPYALTEKDLPDIYNQYEIL 313

Query: 342 KR 343
            +
Sbjct: 314 AK 315


>gi|29376171|ref|NP_815325.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           V583]
 gi|227518800|ref|ZP_03948849.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           TX0104]
 gi|227553414|ref|ZP_03983463.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           HH22]
 gi|229545774|ref|ZP_04434499.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           TX1322]
 gi|229549964|ref|ZP_04438689.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           ATCC 29200]
 gi|255972746|ref|ZP_05423332.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T1]
 gi|255975798|ref|ZP_05426384.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T2]
 gi|256619111|ref|ZP_05475957.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           ATCC 4200]
 gi|256762547|ref|ZP_05503127.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T3]
 gi|256853173|ref|ZP_05558543.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis T8]
 gi|256959027|ref|ZP_05563198.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           DS5]
 gi|256961880|ref|ZP_05566051.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           Merz96]
 gi|256965078|ref|ZP_05569249.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           HIP11704]
 gi|257079058|ref|ZP_05573419.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           JH1]
 gi|257082503|ref|ZP_05576864.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           E1Sol]
 gi|257085135|ref|ZP_05579496.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           Fly1]
 gi|257086696|ref|ZP_05581057.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           D6]
 gi|257089932|ref|ZP_05584293.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           CH188]
 gi|257416141|ref|ZP_05593135.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           AR01/DG]
 gi|257419343|ref|ZP_05596337.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T11]
 gi|257422563|ref|ZP_05599553.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           X98]
 gi|293382946|ref|ZP_06628864.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           R712]
 gi|293389565|ref|ZP_06634022.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           S613]
 gi|294781698|ref|ZP_06747033.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           PC1.1]
 gi|300860342|ref|ZP_07106429.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TUSoD Ef11]
 gi|307270971|ref|ZP_07552254.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX4248]
 gi|307273177|ref|ZP_07554423.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0855]
 gi|307274911|ref|ZP_07556074.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX2134]
 gi|307278019|ref|ZP_07559103.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0860]
 gi|307289153|ref|ZP_07569109.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0109]
 gi|307291949|ref|ZP_07571818.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0411]
 gi|312899462|ref|ZP_07758792.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0470]
 gi|312903355|ref|ZP_07762535.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0635]
 gi|312907583|ref|ZP_07766574.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           DAPTO 512]
 gi|312910201|ref|ZP_07769048.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           DAPTO 516]
 gi|312951545|ref|ZP_07770441.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0102]
 gi|29343634|gb|AAO81395.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           V583]
 gi|227073795|gb|EEI11758.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           TX0104]
 gi|227177465|gb|EEI58437.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           HH22]
 gi|229304877|gb|EEN70873.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           ATCC 29200]
 gi|229309086|gb|EEN75073.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           TX1322]
 gi|255963764|gb|EET96240.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T1]
 gi|255968670|gb|EET99292.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T2]
 gi|256598638|gb|EEU17814.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           ATCC 4200]
 gi|256683798|gb|EEU23493.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T3]
 gi|256711632|gb|EEU26670.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis T8]
 gi|256949523|gb|EEU66155.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           DS5]
 gi|256952376|gb|EEU69008.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           Merz96]
 gi|256955574|gb|EEU72206.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           HIP11704]
 gi|256987088|gb|EEU74390.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           JH1]
 gi|256990533|gb|EEU77835.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           E1Sol]
 gi|256993165|gb|EEU80467.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           Fly1]
 gi|256994726|gb|EEU82028.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           D6]
 gi|256998744|gb|EEU85264.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           CH188]
 gi|257157969|gb|EEU87929.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           ARO1/DG]
 gi|257161171|gb|EEU91131.1| formate acetyltransferase activating enzyme [Enterococcus faecalis
           T11]
 gi|257164387|gb|EEU94347.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           X98]
 gi|291079611|gb|EFE16975.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           R712]
 gi|291081182|gb|EFE18145.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           S613]
 gi|294451250|gb|EFG19717.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           PC1.1]
 gi|300849381|gb|EFK77131.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TUSoD Ef11]
 gi|306496947|gb|EFM66495.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0411]
 gi|306499862|gb|EFM69223.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0109]
 gi|306505416|gb|EFM74602.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0860]
 gi|306508359|gb|EFM77466.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX2134]
 gi|306510162|gb|EFM79186.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0855]
 gi|306512469|gb|EFM81118.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX4248]
 gi|310626611|gb|EFQ09894.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           DAPTO 512]
 gi|310630511|gb|EFQ13794.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0102]
 gi|310633231|gb|EFQ16514.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0635]
 gi|311289474|gb|EFQ68030.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           DAPTO 516]
 gi|311293332|gb|EFQ71888.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0470]
 gi|315027219|gb|EFT39151.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX2137]
 gi|315029337|gb|EFT41269.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX4000]
 gi|315034016|gb|EFT45948.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0017]
 gi|315037025|gb|EFT48957.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0027]
 gi|315145095|gb|EFT89111.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX2141]
 gi|315147312|gb|EFT91328.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX4244]
 gi|315150489|gb|EFT94505.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0012]
 gi|315152432|gb|EFT96448.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0031]
 gi|315155705|gb|EFT99721.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0043]
 gi|315158124|gb|EFU02141.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0312]
 gi|315160389|gb|EFU04406.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0645]
 gi|315164062|gb|EFU08079.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX1302]
 gi|315169778|gb|EFU13795.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX1342]
 gi|315172257|gb|EFU16274.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX1346]
 gi|315575819|gb|EFU88010.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0309B]
 gi|315577659|gb|EFU89850.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0630]
 gi|315580471|gb|EFU92662.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX0309A]
 gi|323480777|gb|ADX80216.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           62]
 gi|327535181|gb|AEA94015.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis
           OG1RF]
 gi|329571652|gb|EGG53333.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX1467]
          Length = 254

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 83/247 (33%), Gaps = 60/247 (24%)

Query: 123 GCSLTCSFCYT------GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           GC + C FC+       G+   V  +T +E+L + L  RS  G+  G             
Sbjct: 31  GCRMRCQFCHNPDTWKIGSGGRV--VTTDEVLEEALRFRSYWGEKGG------------- 75

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARV 231
                I + G GEPL   D +   + +   +          TL T G       P I++ 
Sbjct: 76  -----ITVSG-GEPLLQMDFL---IDLFKKAKAQGI---HTTLDTCGKPFTREEPFISQF 123

Query: 232 GEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
            E +     L   +  + N+   +L   +     + +++   +   +     +   +V++
Sbjct: 124 DELMKYTDLLLFDIKHIDNEQHKLLTTQSN----DNILEMATYLSEIDK--PVWIRHVLV 177

Query: 290 KGINDSPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIV 335
              +D     + L   +K +    K+ ++P++          G  Y            + 
Sbjct: 178 PQRSDYDEYLIRLDAFIKTLNNVDKVEVLPYHTMGKYKWEELGIPYPLEGIEPPKNDRVE 237

Query: 336 TFSECIK 342
              + + 
Sbjct: 238 NAKKLLH 244


>gi|282901591|ref|ZP_06309510.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193517|gb|EFA68495.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Cylindrospermopsis raciborskii CS-505]
          Length = 248

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 89/276 (32%), Gaps = 57/276 (20%)

Query: 95  RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQV 151
           + +G    +ET    +       + +Q GC L C +C+   T   K  +  T  E++ ++
Sbjct: 7   QILGHIHSLETCGTVDGPGIRFVIFTQ-GCLLRCLYCHNPDTRDMKTGKETTVGELVTEI 65

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
              RS +    G   I G                  GEPL   + V+    +      L+
Sbjct: 66  EKYRSYMKFTGGGVTISG------------------GEPLLQPEFVR---EVFRQCQKLN 104

Query: 212 FSKRRITLSTSGFV-----PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
                  L TSGF       ++    +   V+L I     +  L            +E  
Sbjct: 105 I---HTALDTSGFPDLTTSKSVLEFVDL--VLLDIKSFDPNTYL------HVTGVSIEPT 153

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGC 324
           +    +   ++    + F  V++  + D   +   L K +  +    K+ ++PF+     
Sbjct: 154 LRFAEYLQEINKPTWVRF--VLVPHVTDGNENVHQLAKFVSQLTNVEKVEILPFHKLGEY 211

Query: 325 EYL------------CSDQKDIVTFSECIKRSGYSS 348
           ++                 ++I    +  K  G   
Sbjct: 212 KWHELGYHYELGNTIPPSLEEIEKVKDIFKHYGVKV 247


>gi|261367872|ref|ZP_05980755.1| pyruvate formate-lyase 1-activating enzyme [Subdoligranulum
           variabile DSM 15176]
 gi|282570678|gb|EFB76213.1| pyruvate formate-lyase 1-activating enzyme [Subdoligranulum
           variabile DSM 15176]
          Length = 255

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 83/264 (31%), Gaps = 41/264 (15%)

Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
             +ET  + +       +  Q GC++ C +C+                 +          
Sbjct: 11  HSVETFGLVDGPGVRYIIFLQ-GCAMRCQYCHNP---------------ETWAFTRDTEK 54

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRI 217
            P       +   +  R    + + G GEPL   D V +   +A        L  S +  
Sbjct: 55  TPQEAFDAALRYRNYWRNNGGLTISG-GEPLLQMDFVSEVFRLARAKGIHTALDTSGQPF 113

Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
               + ++     + E    ++ + L  + ++    L   + K      I A   Y    
Sbjct: 114 APDNADWMARFDALLENTS-LVILDLKEIEDEKHKKLTGHSNKN-----ILAMAQYVAQ- 166

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN-------PWPGCEY-- 326
           +   +   +V++ G+ D       L   ++ +P   ++ ++P++          G  Y  
Sbjct: 167 HGVPLWIRHVLVPGLTDDAEGLRQLDAFIRTLPTVRRVEVLPYHTLGLFKWKNLGIPYPL 226

Query: 327 ---LCSDQKDIVTFSECIKRSGYS 347
                  ++++    + +    Y 
Sbjct: 227 EGVRVPTEEEVKAAEDLLHVRDYP 250


>gi|325843836|ref|ZP_08168045.1| radical SAM domain protein [Turicibacter sp. HGF1]
 gi|325489254|gb|EGC91633.1| radical SAM domain protein [Turicibacter sp. HGF1]
          Length = 329

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 70/217 (32%), Gaps = 43/217 (19%)

Query: 107 YIPEKSRGTLCVS-SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165
           ++P    GT  +S    GC++TCSFC                  Q               
Sbjct: 68  FMP----GTCILSIGSFGCNMTCSFC------------------QNYEISQHQPHSKTLP 105

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
             +   I S       +      EP   ++ V ++      +       ++I + T+G++
Sbjct: 106 VEQLCQILSEQPNHVGVAFT-YNEPFMWYEYVYEAAKKIKQT----MPHQKIVMVTNGYI 160

Query: 226 PN--IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
               + ++   I  M        +   R   +   +  P+   I         +N   + 
Sbjct: 161 NQSPLMKLLPYIDAMNIDLKGYTNQYYRK--ICGAKLNPVLETIKLV------ANKVHLE 212

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINL-IPFN 319
              +++   NDS  +   + K +    A IN  IPF+
Sbjct: 213 ITTLLVSDENDSLEEVEEIAKFI----ASINPNIPFH 245


>gi|238019572|ref|ZP_04599998.1| hypothetical protein VEIDISOL_01441 [Veillonella dispar ATCC 17748]
 gi|237864271|gb|EEP65561.1| hypothetical protein VEIDISOL_01441 [Veillonella dispar ATCC 17748]
          Length = 491

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 19/114 (16%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQ---KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
            LC++    C+L C +C+        + R                L+        ++ ++
Sbjct: 120 ALCLNIAHDCNLACKYCFASQGDYGGVKR---------------ELMSFDVAKRAVDFLI 164

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
             S  R+   I   G GEPL N+D VK+++              ++TL+T+G +
Sbjct: 165 KMSGPRQHCEIDFFG-GEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGML 217


>gi|313891888|ref|ZP_07825490.1| six-Cys-in-45 modification radical SAM protein [Dialister
           microaerophilus UPII 345-E]
 gi|313119663|gb|EFR42853.1| six-Cys-in-45 modification radical SAM protein [Dialister
           microaerophilus UPII 345-E]
          Length = 477

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 87/248 (35%), Gaps = 28/248 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++    C+L C +C+ G     +              R L+        I+ ++  S
Sbjct: 98  AICLNIAHDCNLRCKYCFAGQGGYGK-------------WRMLMSFDVARRAIDFLIAHS 144

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
             RK   +   G GEPL N+  ++++++             R++L+++G + +  +V   
Sbjct: 145 GPRKHCEVDFFG-GEPLMNWHVIQQTVTYIRQKERKHNKIVRLSLTSNGMLLDKEKVKYL 203

Query: 235 IGVMLAISLHAVSNDLR---NILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLK 290
               +++ L    +  R   + + P        + ++   ++     N           K
Sbjct: 204 NDNHISLIL--SIDGRREMHDRMRPGVHGEGTYDQIVKNLKYCVEHRNGEEYYVRGTFTK 261

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECIKRSGYSS 348
              D   D  +++    G PA +++ P     G +Y  + +    I    E +       
Sbjct: 262 YNLDFTTDVKDMVD--TGFPA-LSMEPVIGEEGTDYSITKEDLPAIKKEYEKLADFFIK- 317

Query: 349 PIRTPRGL 356
             R   G 
Sbjct: 318 --REEEGR 323


>gi|253582696|ref|ZP_04859917.1| pyruvate-formate lyase-activating enzyme [Fusobacterium varium ATCC
           27725]
 gi|251835566|gb|EES64106.1| pyruvate-formate lyase-activating enzyme [Fusobacterium varium ATCC
           27725]
          Length = 243

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 80/234 (34%), Gaps = 34/234 (14%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C FC+        N     I          + +       +         K   +
Sbjct: 29  GCPLRCKFCH--------NPDTWNISD------EKIRERAVETFEKVKKYKGYFGKKGGL 74

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
            + G GEP    D + +         G++       + TSG++    +  V E   ++L 
Sbjct: 75  TVTG-GEPFLQADFILELFK-LCKEDGIN-----TVVDTSGYIFNEKVKEVLEYTDLVL- 126

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + + A+   +   L  +     LE  +   ++       +R+   +V++ GI D+     
Sbjct: 127 LDIKAIDEKVYKELTGVE----LENTLKFAQYLKEK--GKRVWIRHVIVPGITDNDELLN 180

Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS--SPI 350
            L + +  +    K+ L+P++     +Y     K ++   E + +        I
Sbjct: 181 RLAEYVSNLDNVEKVELLPYHKLGEFKYKELGMKYVLEGVEELSKERLENAVTI 234


>gi|293375979|ref|ZP_06622239.1| radical SAM domain protein [Turicibacter sanguinis PC909]
 gi|292645416|gb|EFF63466.1| radical SAM domain protein [Turicibacter sanguinis PC909]
          Length = 329

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 70/217 (32%), Gaps = 43/217 (19%)

Query: 107 YIPEKSRGTLCVS-SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165
           ++P    GT  +S    GC++TCSFC                  Q               
Sbjct: 68  FMP----GTCILSIGSFGCNMTCSFC------------------QNYEISQHQPHSKTLP 105

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
             +   I S       +      EP   ++ V ++      +       ++I + T+G++
Sbjct: 106 VEQLCQILSEQPNHVGVAFT-YNEPFMWYEYVYEAAKKIKQT----MPHQKIVMVTNGYI 160

Query: 226 PN--IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
               + ++   I  M        +   R   +   +  P+   I         +N   + 
Sbjct: 161 NQSPLMKLLPYIDAMNIDLKGYTNQYYRK--ICGAKLNPVLETIKLV------ANKVHLE 212

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINL-IPFN 319
              +++   NDS  +   + K +    A IN  IPF+
Sbjct: 213 ITTLLVSDENDSLEEVKEIAKFI----ASINPNIPFH 245


>gi|291280473|ref|YP_003497308.1| pyruvate formate-lyase activating enzyme [Deferribacter
           desulfuricans SSM1]
 gi|290755175|dbj|BAI81552.1| pyruvate formate-lyase activating enzyme [Deferribacter
           desulfuricans SSM1]
          Length = 298

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 89/240 (37%), Gaps = 39/240 (16%)

Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
            C+ C T   +   +  A EI+   + A  ++      E                +   G
Sbjct: 80  NCTLCGTCVDECPAD--ALEIIGYYIAAEEVIESVCKDELFFDSSKGG-------VTFSG 130

Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEEIGVMLAISLH 244
            GEP    + +++ L   S    L+ S     + TSG+    NI    + I   L   + 
Sbjct: 131 -GEPFAQPEFLRELLK-LSKEKRLNTS-----VDTSGYTDFANIEACNQYIDTYL-YDIK 182

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
            + +D       ++ +    ++++  +    ++   R+     ++ G+ND   +   +  
Sbjct: 183 MMDDDKHKKYTGVSNR----LILENLKKLDEIAADIRVRIP--LIPGVNDDVEEIDKIYD 236

Query: 305 ILKGIPAK--INLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSGYSSPI 350
            +K + +   ++L+P++     +YL              D+  I  F E  +++G+S  I
Sbjct: 237 FIKDLKSVKGVDLLPYHNIMIDKYLRLGMDVLVGDIPEIDKNKINYFKEFFEKNGFSVLI 296


>gi|329121946|ref|ZP_08250559.1| radical SAM domain protein [Dialister micraerophilus DSM 19965]
 gi|327467392|gb|EGF12891.1| radical SAM domain protein [Dialister micraerophilus DSM 19965]
          Length = 477

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 87/248 (35%), Gaps = 28/248 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++    C+L C +C+ G     +              R L+        I+ ++  S
Sbjct: 98  AICLNIAHDCNLRCKYCFAGQGGYGK-------------WRMLMSFDVARRAIDFLIAHS 144

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
             RK   +   G GEPL N+  ++++++             R++L+++G + +  +V   
Sbjct: 145 GPRKHCEVDFFG-GEPLMNWHVIQQTVTYIRQKERKHNKIVRLSLTSNGMLLDKEKVKYL 203

Query: 235 IGVMLAISLHAVSNDLR---NILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLK 290
               +++ L    +  R   + + P        + ++   ++     N           K
Sbjct: 204 NDNHISLIL--SIDGRREMHDRMRPGVHGEGTYDQIVKNLKYCVEHRNGEEYYVRGTFTK 261

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECIKRSGYSS 348
              D   D  +++    G PA +++ P     G +Y  + +    I    E +       
Sbjct: 262 YNLDFTTDVKDMVD--TGFPA-LSMEPVIGEEGTDYSITKEDLPAIKKEYEKLADFFIK- 317

Query: 349 PIRTPRGL 356
             R   G 
Sbjct: 318 --REEEGR 323


>gi|315168988|gb|EFU13005.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis
           TX1341]
          Length = 254

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 83/247 (33%), Gaps = 60/247 (24%)

Query: 123 GCSLTCSFCYT------GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           GC + C FC+       G+   V  +T +E+L + L  RS  G+  G             
Sbjct: 31  GCRMRCQFCHNPDTWKIGSGGRV--VTTDEVLEEALRFRSYWGEKGG------------- 75

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARV 231
                I + G GEPL   D +   + +   +          TL T G       P I++ 
Sbjct: 76  -----ITVSG-GEPLLQMDFL---IDLFKKAKAQGI---HTTLDTCGKPFTREEPFISQF 123

Query: 232 GEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
            E +     L   +  + N+   +L   +     + +++   +   +     +   +V++
Sbjct: 124 DELMKYTDLLLFDIKHIDNEQHKLLTTQSN----DNILEMATYLSEIDK--PVWIRHVLV 177

Query: 290 KGINDSPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIV 335
              +D     + L   +K +    K+ ++P++          G  Y            + 
Sbjct: 178 PQRSDYDEYLIRLDAFIKTLNNVDKVEVLPYHTMGKYKWEELGIPYPLEGIEPPKNDRVE 237

Query: 336 TFSECIK 342
              + + 
Sbjct: 238 NAKKLLH 244


>gi|294793467|ref|ZP_06758604.1| radical SAM domain protein [Veillonella sp. 3_1_44]
 gi|294455037|gb|EFG23409.1| radical SAM domain protein [Veillonella sp. 3_1_44]
          Length = 463

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 19/114 (16%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQ---KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
            LC++    C+L C +C+        + R                L+        ++ ++
Sbjct: 92  ALCLNIAHDCNLACKYCFASQGDYGGVKR---------------ELMSFDVAKRAVDFLI 136

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
             S  R+   I   G GEPL N+D VK+++              ++TL+T+G +
Sbjct: 137 KMSGPRQHCEIDFFG-GEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGML 189


>gi|269797703|ref|YP_003311603.1| radical SAM protein [Veillonella parvula DSM 2008]
 gi|282848976|ref|ZP_06258365.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
 gi|269094332|gb|ACZ24323.1| Radical SAM domain protein [Veillonella parvula DSM 2008]
 gi|282581251|gb|EFB86645.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
          Length = 469

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 19/114 (16%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQ---KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
            LC++    C+L C +C+        + R                L+        ++ ++
Sbjct: 98  ALCLNIAHDCNLACKYCFASQGDYGGVKR---------------ELMSFDVAKRAVDFLI 142

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
             S  R+   I   G GEPL N+D VK+++              ++TL+T+G +
Sbjct: 143 KMSGPRQHCEIDFFG-GEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGML 195


>gi|160902149|ref|YP_001567730.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95]
 gi|160359793|gb|ABX31407.1| Radical SAM domain protein [Petrotoga mobilis SJ95]
          Length = 464

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 23/227 (10%)

Query: 124 CSLTCSFC-YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           C+L C +C Y+    + RN T   +   +      +        +    I     +   I
Sbjct: 78  CNLQCRYCIYSEVYPMYRNNTLRAMNEDI-----AIKAIDLYFSLLREGISYNPYREPTI 132

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMG-LSFSKRRITLSTSG--FVPNIARVGEEIGVML 239
              G GEPL NF+ +KK +          +      T++T+G      IA    +    L
Sbjct: 133 GFYG-GEPLLNFELIKKCIKYVKIKYKEFN---PHFTITTNGTLLSSKIASFLVQNNCSL 188

Query: 240 AISLHAVSND-LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
            +SL     +  RN + P N K   ++++    +         + F   +     D  + 
Sbjct: 189 IVSLDGPKEEHDRNRIFP-NGKGSHDIIMKRLNNLKKFYPDLPV-FSIAVYDWKTDFDKV 246

Query: 299 ALNLIKILKGIPAKINLIPFNPWP--GCEYLCSDQKDIVTFSECIKR 343
                +  K +P+   LI  N     G  Y   +++D  TF E IK+
Sbjct: 247 NEFFAR--KDVPS---LIKANLVDAKGTYYEQFNKEDFETFKEKIKK 288


>gi|228996442|ref|ZP_04156083.1| Radical SAM domain protein [Bacillus mycoides Rock3-17]
 gi|228763325|gb|EEM12231.1| Radical SAM domain protein [Bacillus mycoides Rock3-17]
          Length = 468

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 86/242 (35%), Gaps = 27/242 (11%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
            +     LC++    C+L+C +C+    K   +             R+++    G   I+
Sbjct: 94  RQTYVKALCLNVAHTCNLSCEYCFASQGKYNGS-------------RAIMSYEVGKRAID 140

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--P 226
            ++  S   +  +I   G GEPL  +  VK+ ++ A           R T +T+G +   
Sbjct: 141 YLLENSGHHRNLDIDFFG-GEPLMAWKVVKQIVTYARSKEKEYKKTFRFTFTTNGMLLND 199

Query: 227 NIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
            I     +    + +SL     V + LR     +  K   + ++   + +      +   
Sbjct: 200 EITDFLNKEMYNVVLSLDGRKEVHDHLRK---TVTGKGSYDYIVPKFQEFVKSRGDKEYY 256

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECI 341
                     D   D  ++  +  G   K+++ P    P   Y  +++   DI    E +
Sbjct: 257 VRGTYTHNNVDFTNDIFHIADL--GFD-KLSMEPVICNPREPYALTEKDLPDIYNQYEIL 313

Query: 342 KR 343
            +
Sbjct: 314 AK 315


>gi|300728461|ref|ZP_07061821.1| pyruvate formate-lyase 1-activating enzyme [Prevotella bryantii
           B14]
 gi|299774262|gb|EFI70894.1| pyruvate formate-lyase 1-activating enzyme [Prevotella bryantii
           B14]
          Length = 248

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 82/241 (34%), Gaps = 47/241 (19%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C FC+   T         TA+++L +    R+  G+  G                
Sbjct: 28  GCPMRCQFCHNPDTWKLDKTNETTADDLLDKAERYRTYWGEKGG---------------- 71

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS--FSKRRITLSTSG-FVPNIARVGEEIG 236
             I + G GE L   D + +    A    G++          +  G +     ++     
Sbjct: 72  --ITVSG-GEALMQIDFLLELFEKA-HQRGINTCLDTSAQPFTRHGAWFEKFEKLMAVTD 127

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             + + +  ++++    L         E ++D  R+   ++    +   +V++  I D+ 
Sbjct: 128 -TILLDIKHINSEEHKKLTRWGN----ENILDCARYLSDINK--PVWIRHVLIPSITDND 180

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFSECIK 342
           R    L + LK +    +I+++P++     +Y                 + I      + 
Sbjct: 181 RYLQELAEFLKTLKNIERIDVLPYHTLGVFKYEKLGIDYPLEGIPTPTPERIENAKNILA 240

Query: 343 R 343
           +
Sbjct: 241 Q 241


>gi|266619565|ref|ZP_06112500.1| pyruvate formate-lyase 1-activating enzyme [Clostridium hathewayi
           DSM 13479]
 gi|288868850|gb|EFD01149.1| pyruvate formate-lyase 1-activating enzyme [Clostridium hathewayi
           DSM 13479]
          Length = 256

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 76/215 (35%), Gaps = 39/215 (18%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     ++        +T  EIL Q   +R                      
Sbjct: 28  GCPMRCQYCHNPDTWSLHGGTA--MTVSEILDQYEASRPFY------------------- 66

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARVGEE 234
           +   I + G GEPL   + V +    A        L  S      S   ++  + R+   
Sbjct: 67  RGGGITVTG-GEPLLQMEFVTELFEEACRRDIHTCLDTSGVTFRASDQAYLEQLDRLLAS 125

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              ++ + L  + ++    L   + +  L+        Y        +   +V++ G+ D
Sbjct: 126 TR-LVMLDLKQIDDEKHRALTGHSNRNILQ-----FAEYLDQK-QVPMWIRHVVVPGLTD 178

Query: 295 SPRDALNLIKILKGIP-AK-INLIPFNPWPGCEYL 327
           S +D  +L + +  +  AK ++++P++     +Y 
Sbjct: 179 SEKDLYHLGRFIGTLKYAKALDVLPYHDMGKVKYK 213


>gi|315635902|ref|ZP_07891164.1| radical SAM domain protein [Arcobacter butzleri JV22]
 gi|315479881|gb|EFU70552.1| radical SAM domain protein [Arcobacter butzleri JV22]
          Length = 457

 Score = 44.5 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 18/197 (9%)

Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           V+ E   I       L ++   GC+L+C++CY      ++N  + ++  ++         
Sbjct: 75  VKEEETKIEHFPAKALILNVTSGCNLSCTYCYKADLTSLKN--SGQMTFEI--------- 123

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRI 217
               + I+     S   K  +I   G GEPL N   +K+ ++ A+D   S GL      +
Sbjct: 124 --AKDAIDMFYKESPYLKEYSITFFG-GEPLSNLPLIKQIIAYANDFFESKGLKIG-YSM 179

Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
           T + +     + R   E  V L IS+    +      V  N K   E +         + 
Sbjct: 180 TSNATLLTDEVIRYLHESKVDLTISIDGPESLHNKTRVYENGKGSYEKVAKNVAKLLDIY 239

Query: 278 NARRITFEYVMLKGIND 294
             R +     + +G+ D
Sbjct: 240 KNRTVGARVTLTRGVTD 256


>gi|256810318|ref|YP_003127687.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256793518|gb|ACV24187.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 433

 Score = 44.5 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 80/217 (36%), Gaps = 30/217 (13%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           + E+ R  + V    GC+L C FC     +  +                   D     + 
Sbjct: 102 LIERGRNIIQVRGHCGCNLNCIFCSVDEGEYSK-----------TRKNDYYVDLEYLVEN 150

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNF---DNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
              +    G K     + G GEP   +   D V++ + I     G+      +++ T+G 
Sbjct: 151 YKKMADFKGNKFIEAHLDGQGEPALYYPLVDLVQELVEINKKGNGI------VSMQTNGT 204

Query: 225 V---PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           V     I  + E     + +S++A  ++    ++   R Y +E ++D   +    ++   
Sbjct: 205 VLDYKLIDELEEAGLHRINLSINA-LDEKVAKMLSGRRDYNIEKILDIAEYI--KNSKIH 261

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKI--NLI 316
           +    ++L  IND   +   +I     +  ++  N+I
Sbjct: 262 LLIAPLLLPNIND--EEFKKVIDYAVDLDLRVKQNII 296


>gi|120586952|ref|YP_961297.1| radical SAM domain-containing protein [Desulfovibrio vulgaris
           subsp. vulgaris DP4]
 gi|120564366|gb|ABM30109.1| Radical SAM domain protein [Desulfovibrio vulgaris DP4]
          Length = 473

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 29/182 (15%)

Query: 184 MMGMGEPLCNFDNVKKSLSIA---SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           + G G+P+ N     ++L +       M    S   +     G  P++  +         
Sbjct: 82  IAGPGDPMANAAATLETLRLIRQRHPDMLFCLSSNGL-----GMPPHLDALAANGVTHAT 136

Query: 241 ISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
           ++++AV  D+   L                 +  LE  + A            +    ++
Sbjct: 137 LTINAVDPDISARLYTWVRDGKVVWRGRPAAELMLERQLTALTGLVQR--GIVVKVNTIL 194

Query: 289 LKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYLC---SDQKDIVTFSECIKRS 344
           + GIND       + + +  + A  +N+IP  P              + +   +  +  +
Sbjct: 195 VPGINDG--HVEQVAEKVAALGATLMNIIPLRPTHDTPLAQVAEPSPEAVGE-ARRLAGA 251

Query: 345 GY 346
             
Sbjct: 252 HI 253


>gi|227503993|ref|ZP_03934042.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
           striatum ATCC 6940]
 gi|227199387|gb|EEI79435.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
           striatum ATCC 6940]
          Length = 289

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 102/306 (33%), Gaps = 77/306 (25%)

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I  PE+++ + + D             +     + +V  P  +R T+ +S   GC L C
Sbjct: 34  EIKRPELMEARRTGD----------IALVHSWELVTSVDGP-GTRMTMFMS---GCPLRC 79

Query: 129 SFCYTGTQKLVRNLTAEEI----LLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
            +C+        N    E+    L ++  + + +    P  +   G +  S G  +  I 
Sbjct: 80  QYCH--------NPDTMEMKVGTLERIEDVVKRIKRYKPIFKASGGGLTISGGEPLFQIA 131

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
                        V K +       G+       T+ TSGF+ +  R  +   + L +  
Sbjct: 132 FTR---------RVLKEV----HDAGI-----HTTIDTSGFLGSRLRDEDLENIDLVLLD 173

Query: 244 HAVSND------LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
               ++       R  L P          ID       +   + +   +V++ G+ DSP 
Sbjct: 174 VKSGDEETYKLVTRRELQP---------TIDFGDRLSAM--GKPVWIRFVVVPGLTDSPE 222

Query: 298 DALNLIKILKGIPAKINLI---PFNP-----WPGCEY-------LCSDQKDIVTFSECIK 342
           +  N+ +I+      +  I   PF+      W    Y            +DI    +  +
Sbjct: 223 NVRNVAEIVGRWSNNVERIEVLPFHNMGADKWHELGYPYTLEDTKPPKPEDIEAIRDVFR 282

Query: 343 RSGYSS 348
             G++ 
Sbjct: 283 AKGFTV 288


>gi|284799798|ref|ZP_06390346.1| pyruvate formate-lyase 1-activating enzyme [Neisseria subflava
           NJ9703]
 gi|284796831|gb|EFC52178.1| pyruvate formate-lyase 1-activating enzyme [Neisseria subflava
           NJ9703]
          Length = 204

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 62/179 (34%), Gaps = 39/179 (21%)

Query: 189 EPLCNFDNVKK--------SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           EPL  ++ V+          +    DS G +            +   +  + +    ++ 
Sbjct: 38  EPLLQYEFVRDWFTACREHDIHTCLDSNGYAL----------HYDSILDDLLDHTN-LVM 86

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + L  +  ++  +LV      P    +   R+    +   R+   YV++ G  D  R A 
Sbjct: 87  LDLKQIDPEIHKVLV----GIPNTKTLKFARYLAERNQPTRV--RYVVVPGYTDDERSAH 140

Query: 301 NLIKILKGIPAK--INLIPFNP-------WPGCEYL-----CSDQKDIVTFSECIKRSG 345
            L + +  +     + L+P++          G EY         ++ I+   E ++  G
Sbjct: 141 LLGEFIGDMDNVEMVELLPYHELGAHKWALCGDEYKLKGVHPPPKETILKIKEILESYG 199


>gi|193213269|ref|YP_001999222.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobaculum
           parvum NCIB 8327]
 gi|193086746|gb|ACF12022.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobaculum
           parvum NCIB 8327]
          Length = 424

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 65/162 (40%), Gaps = 19/162 (11%)

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIG 236
           IS + + G G+P  N +   ++L +  +          + ++T+G   +P I  + E   
Sbjct: 75  ISVVGIAGPGDPFANPEETMETLRLVREKY----PDMLLCVATNGLDVLPYIEELAELKV 130

Query: 237 VMLAISLHAVSNDLRNILVPINR--------KYPLEMLIDACRHYPGLSNARRIT--FEY 286
             + ++++A+  ++   +    R        +   E+L++             +T     
Sbjct: 131 SHVTLTINAIDPEIGQEIYAWVRYQKRMYRDRQAAELLLENQLAALQKLKRFGVTAKVNS 190

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327
           +++ GIND  +  + + + +  + A I N +P+       + 
Sbjct: 191 IIIPGIND--KHVVEVARQVASMGADILNALPYYNTTETVFE 230


>gi|128228|sp|P11067|NIFB_AZOVI RecName: Full=FeMo cofactor biosynthesis protein nifB
 gi|142338|gb|AAA22148.1| nifB [Azotobacter vinelandii]
          Length = 502

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 76/216 (35%), Gaps = 32/216 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C +C         N +   ++ +VL         P     +   + +   ++S + 
Sbjct: 67  CNIQCHYCNRKYD--CANESRPGVVSEVLT--------PEQAVKKVKAVAAAIPQMSVLG 116

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241
           + G G+PL N      +  + S+         ++ +ST+G      +  + +     + I
Sbjct: 117 IAGPGDPLANPKRTLDTFRMLSEQA----PDMKLCVSTNGLALPECVEELAKHNIDHVTI 172

Query: 242 SLHAVSNDLRNILVP-----------INRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
           +++ V  ++   + P             RK  +E                 +    VM+ 
Sbjct: 173 TINCVDPEIGAKIYPDLLEQQAHPRRQGRKILIEQQQKGLEMLVAR--GILVKVNSVMIP 230

Query: 291 GINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325
           G+ND       + KI+K   A + N++P    P   
Sbjct: 231 GVND--EHLKEVSKIVKAKGAFLHNVMPLIAEPEHG 264


>gi|157369944|ref|YP_001477933.1| pyruvate formate lyase-activating enzyme 1 [Serratia proteamaculans
           568]
 gi|157321708|gb|ABV40805.1| pyruvate formate-lyase activating enzyme [Serratia proteamaculans
           568]
          Length = 246

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++   +  R  +    G              
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKDAVSYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
                V    GE +   + V+     A    G++       L T+GFV    P I  + +
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHEEGIN-----TCLDTNGFVRRYDPVIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++D+   LV ++    LE        Y    N  R    YV++ G +
Sbjct: 123 ATD-LVMLDLKQMNDDIHQNLVGVSNHRTLE-----FARYLAKRNQ-RTWIRYVVVPGWS 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339
           D  +    L +  K +    KI L+P++          G EY            +     
Sbjct: 176 DDDKSTHLLGEFTKDMTNIEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKADTMERVKG 235

Query: 340 CIKRSGYSS 348
            ++  G+  
Sbjct: 236 ILESYGHKV 244


>gi|308067130|ref|YP_003868735.1| arylsulfatase regulator (Fe-S oxidoreductase) [Paenibacillus
           polymyxa E681]
 gi|305856409|gb|ADM68197.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Paenibacillus
           polymyxa E681]
          Length = 484

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 16/193 (8%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
           ++ +    TL +     C+L CS+C        R  T+            ++      + 
Sbjct: 86  HMLQHQLKTLTLQVTQNCNLRCSYCVYSGGYDNRGHTS-----------LMMDFETARKC 134

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
           I+ ++  SV     +    G GEPL NF  VKK +    + +        +T + +    
Sbjct: 135 IDFVIDRSVDSDRLDFGFYG-GEPLINFPLVKKCVEYIKEQVAYRDVGFHLTTNGTLLND 193

Query: 227 NIARVGEEIGVMLAISL-HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
           +I    +E   +L ISL     N  RN    +N +   + +I        +       FE
Sbjct: 194 DILDFLDEHHFVLTISLDGDQENHDRNRRFAVNGRGSFDTIIANVD---KIKRNYPDLFE 250

Query: 286 YVMLKGINDSPRD 298
           ++    + D+  D
Sbjct: 251 WINFNVVLDTRND 263


>gi|225076522|ref|ZP_03719721.1| hypothetical protein NEIFLAOT_01570 [Neisseria flavescens
           NRL30031/H210]
 gi|224952201|gb|EEG33410.1| hypothetical protein NEIFLAOT_01570 [Neisseria flavescens
           NRL30031/H210]
          Length = 190

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 62/179 (34%), Gaps = 39/179 (21%)

Query: 189 EPLCNFDNVKK--------SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           EPL  ++ V+          +    DS G +            +   +  + +    ++ 
Sbjct: 24  EPLLQYEFVRDWFTACREHDIHTCLDSNGYAL----------HYDSILDDLLDHTN-LVM 72

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + L  +  ++  +LV      P    +   R+    +   R+   YV++ G  D  R A 
Sbjct: 73  LDLKQIDPEIHKVLV----GIPNTKTLKFARYLAERNQPTRV--RYVVVPGYTDDERSAH 126

Query: 301 NLIKILKGIPAK--INLIPFNP-------WPGCEYL-----CSDQKDIVTFSECIKRSG 345
            L + +  +     + L+P++          G EY         ++ I+   E ++  G
Sbjct: 127 LLGEFIGDMDNVEMVELLPYHELGAHKWALCGDEYKLKGVHPPPKETILKIKEILESYG 185


>gi|294791611|ref|ZP_06756759.1| radical SAM domain protein [Veillonella sp. 6_1_27]
 gi|294456841|gb|EFG25203.1| radical SAM domain protein [Veillonella sp. 6_1_27]
          Length = 463

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 19/114 (16%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQ---KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
            LC++    C+L C +C+        + R                L+        ++ ++
Sbjct: 92  ALCLNIAHDCNLACKYCFASQGDYGGVKR---------------ELMSFDVAKRAVDFLI 136

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
             S  R+   I   G GEPL N+D VK+++              ++TL+T+G +
Sbjct: 137 KMSGSRQHCEIDFFG-GEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGML 189


>gi|34556807|ref|NP_906622.1| hypothetical protein WS0374 [Wolinella succinogenes DSM 1740]
 gi|34482522|emb|CAE09522.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 303

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 38/202 (18%)

Query: 124 CSLTCSFC------YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           C+  C +C       T +   V     EEIL ++  A                       
Sbjct: 29  CNFDCLYCELEGKKATDSMGEV--AKVEEILEELREALPRYKPDV--------------- 71

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS---GFVPNIARVGEE 234
               I +   GEP   +  +   +   +    L  S + + LS     G       + E 
Sbjct: 72  ----ITVTANGEPTL-YPALLPLIRGINA---LPHSAKTLILSNGSRFGEPEVQEALLEF 123

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             V  ++   +     R  +   +    +  +I   + +        I  E + +KG+ND
Sbjct: 124 DMVKFSLDAVSARAFKR--VDRAHDSLSISQIIQGIKGFRSRYRGDLIA-EVLFVKGVND 180

Query: 295 SPRDALNLIKILKGI-PAKINL 315
           SP +A  + ++LK I P++++L
Sbjct: 181 SPEEARAIARVLKEIAPSRVDL 202


>gi|168207460|ref|ZP_02633465.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens E
           str. JGS1987]
 gi|170661174|gb|EDT13857.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens E
           str. JGS1987]
          Length = 235

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 88/235 (37%), Gaps = 36/235 (15%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154
           G    +ET+ + +       V  Q GC + C+FC+   T  +      T EE++ ++   
Sbjct: 4   GRIHSLETMGLVDGPGIRFVVFMQ-GCGIRCAFCHNPDTWCKDKGTEYTPEELVNKIKRF 62

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
           ++      G                  +   G GEPL   + + + L       G+    
Sbjct: 63  KTYFNASGGG-----------------VTFSG-GEPLLQPEFLLECLK-LCKKEGI---- 99

Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
              TL T+G          E   ++   +     +    LV +    P++  ++  +   
Sbjct: 100 -HTTLDTAGVGLGNYEEILEYVDLILFDVKETDPEKYKNLVKV----PIDKSLEFLK--V 152

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             S  +++   +V++ G  D+  D + + KI+ G+    K+ L+P++     +Y 
Sbjct: 153 AQSMNKKMWIRHVVVPGYTDNKEDLMRIKKIVDGLNNIEKVELLPYHVLGVNKYE 207


>gi|289450580|ref|YP_003475181.1| six-Cys-in-45 modification radical SAM protein [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185127|gb|ADC91552.1| six-Cys-in-45 modification radical SAM protein [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 469

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 107/318 (33%), Gaps = 33/318 (10%)

Query: 27  PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR 86
            +        ++ + ++   I +       ++     L++       EI D     D   
Sbjct: 16  SESQALFFVDELAEAVFSAYIENSAKRPTKAKLT--ELSERSGFDIHEIEDCCDEVDALI 73

Query: 87  --KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
             K + + P +     + +E +Y  +    ++C+     C+L C +C+ G      +   
Sbjct: 74  EQKAIFQPPVK-----ISVEQLYPEKPMIKSMCLHLSHDCNLRCKYCFAGQG----DYGT 124

Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
                     RS+L    G   I+ ++  S  R   +I   G GEPL N+  V +    A
Sbjct: 125 GH--------RSMLALATGKRAIDFLIEASRSRHNLDIDFFG-GEPLLNWPVVVELTKYA 175

Query: 205 SDS---MGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK 260
                    +      T +T      I  + E +  V+L+I     +ND   +      +
Sbjct: 176 ETEGPKHNKNIRLTLTTNATLLNQEKIDFLNEHMKNVVLSIDGRPETND--RMRPATGGR 233

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
               +++   + +      +             D  +D L+     +G+  ++++ P   
Sbjct: 234 SSYALVMRNIKKFVAQRGKKEYYVRGTYTHFNTDFSKDVLHFAD--EGLE-QLSMEPVVA 290

Query: 321 WPGCEY--LCSDQKDIVT 336
            P  +Y    SD   I  
Sbjct: 291 PPEVDYSLKLSDLPQIEA 308


>gi|301058093|ref|ZP_07199145.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300447725|gb|EFK11438.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 429

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 71/219 (32%), Gaps = 27/219 (12%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C  C +                    +   +   P   +I  + +  +      IV
Sbjct: 203 CNAACLGCLSLQPG-----------ATFEASHERICFTPSMGEIVDLAVAHLTCAPKAIV 251

Query: 184 MMGMG---EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-FVPNIARVGEEIGVML 239
             G G   EPL  +D + +S+            K  I L+T+G F   I ++ E     +
Sbjct: 252 SFGQGCEGEPLTEYDLIAESIREIRRQTL----KGTINLNTNGSFPDRIEKIAESGLDSI 307

Query: 240 AISLHAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
            ISL++   +  R    P  + Y    ++ A                Y++  G++D   +
Sbjct: 308 RISLNSARREFYRAYYRP--KGYGFNDVVKAIG--LSRQLGLYTMLNYLVFPGVSDQQEE 363

Query: 299 ALNLIKILKGIPAKINLIPF-NPWPGCEYLCSDQKDIVT 336
              L  ++      +N +   N     E+  +    I  
Sbjct: 364 LDALKALISKTG--VNFLHLKNLCIDPEFYTAKMPAIHA 400


>gi|118581863|ref|YP_903113.1| radical SAM domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118504573|gb|ABL01056.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379]
          Length = 289

 Score = 44.1 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 86/240 (35%), Gaps = 32/240 (13%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
               G + ++   GC++ C +C        R+  A E     + +R L       +  E 
Sbjct: 21  HHKNGRMHLAVAPGCNIKCGYCT------RRHDCANE-SRPGVTSRLLTPSEALVKVREV 73

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPN 227
           M  P VG  I  I + G G+PL N +   ++  +        F    + +ST+G     +
Sbjct: 74  MASPVVGPIIKVIGIAGPGDPLAN-EETFETFELVKRE----FPHLMLCMSTNGLLLPES 128

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILV----PINRKYP--------LEMLIDACRHYPG 275
           I R+ E     L ++++A+   +   +        R Y         +    +  +    
Sbjct: 129 IDRLHELGLHSLTVTINAIDAGVGAWIYRHVIYHGRSYSGVEGAAILIANQFEGLKRAAR 188

Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY-LCSDQKD 333
           L     I    V++ GIN        +   +K + A + N++P  P     +     ++ 
Sbjct: 189 L--GMTIKVNTVLIPGIN--EDQIPLIAARVKELGAFVMNIMPLIPQADLAHIQRPSEEH 244


>gi|158421695|ref|YP_001522987.1| biotin synthase-related enzyme [Azorhizobium caulinodans ORS 571]
 gi|158328584|dbj|BAF86069.1| biotin synthase-related enzyme [Azorhizobium caulinodans ORS 571]
          Length = 326

 Score = 44.1 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 6/138 (4%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+ E     L + L AV+ ++R  ++P   + P+   + A      +    +++  Y+
Sbjct: 177 FKRMHEAGADSLGMHLEAVTPEVRARIMPGKAQVPIARYLSAFEAAVPVFGKGQVS-TYI 235

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347
           +  G+ D+    L + + L        ++PF P  G             F + + +   +
Sbjct: 236 L-AGLGDTREAILAMCEELLKRGVYPFVVPFVPISGTPLEGHPGPQ-PAFMKSVLQP-LA 292

Query: 348 SPIRTP--RGLDILAACG 363
           + +R    R  DI A CG
Sbjct: 293 AMVRAAGLRATDIKAGCG 310


>gi|126458652|ref|YP_001054930.1| GTP cyclohydrolase subunit MoaA [Pyrobaculum calidifontis JCM
           11548]
 gi|126248373|gb|ABO07464.1| GTP cyclohydrolase subunit MoaA [Pyrobaculum calidifontis JCM
           11548]
          Length = 309

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 69/192 (35%), Gaps = 36/192 (18%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C FC+   Q                  +   G     ED E          + +  
Sbjct: 21  CNYNCLFCHFEGQ------------------QRRQGSTLTAEDYEFASYVFSKLGVYDFK 62

Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVML 239
           + G GEPL   + D + ++++              ++++T+G +    + R+ +     +
Sbjct: 63  LTG-GEPLLRRDIDKIVEAIARV----------AAVSITTNGLLLRRWVDRLYKAGLRKI 111

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            +S+H    +  + +V     +  + ++   +     +    I    V+L+GIN   +  
Sbjct: 112 NVSIHTADPEKYSKVV-GAPTWAFKEVLRGLQE--SRNRGLAIKLNAVVLRGINTDDKSV 168

Query: 300 LNLIKILKGIPA 311
             L+K+   + A
Sbjct: 169 KELVKLAASLDA 180


>gi|188590775|ref|YP_001921048.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188501056|gb|ACD54192.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 310

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 81/258 (31%), Gaps = 50/258 (19%)

Query: 124 CSLTCSFCYTGTQKLVR--------------NLTAEEILLQVLLARSLLGDFPGCEDIEG 169
           C   C +         R              N          L+            D   
Sbjct: 69  CKTICEYDAIDLNNFNRIDRDKCISCGKCAENCYPG-----ALVVSGKEMSVKEVLDELN 123

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-- 227
                  R    + + G GEPL   +    +L I      +       T+ T+G+V    
Sbjct: 124 KDSSQFRRSNGGVTLSG-GEPLLQHEF---ALEILKGCKSIGI---HTTIETTGYVDKEI 176

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
           + ++   + ++L + +  ++ D     V  + K     +++  +    L  +  I     
Sbjct: 177 LRKIAPWVDLVL-LDIKTLNEDKHIKYVGASNKI----ILENAKSISELVTSTIIRVP-- 229

Query: 288 MLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYLC-------------SDQK 332
           ++   N   +   ++ K  K +    +I+L+P++     +Y C               ++
Sbjct: 230 VIPQFNCDEKSIQDIAKFTKSLNNITEIHLLPYHKLGLNKYDCLGKEYLMKNDINTPSEE 289

Query: 333 DIVTFSECIKRSGYSSPI 350
            ++ F + ++  G +  I
Sbjct: 290 VMLNFKKIVEDIGLTCNI 307


>gi|257470822|ref|ZP_05634912.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185]
 gi|317065026|ref|ZP_07929511.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185]
 gi|313690702|gb|EFS27537.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185]
          Length = 282

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 23/189 (12%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC  G                  LA          E    +       K   I 
Sbjct: 28  CNMNCVFCECGATPK--------------LAEKRESFKDIREVENEIRSVLKDVKPDYIT 73

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--LAI 241
             G GEP  + D + K ++   D+        ++ L T+  + N   V +E+     +  
Sbjct: 74  FSGNGEPTLSKD-LGKIINWIKDNT-----DVKVCLITNSLLLNDDEVIKEVQRADLIIP 127

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           +L++V +++ + +   +    + ML+   +    + N  ++  E  +++G+ND       
Sbjct: 128 TLNSVDDEIFHKINRPSNNIHISMLMSGLKKLSAVYNG-KVYLETFIIEGLNDGEDHIKR 186

Query: 302 LIKILKGIP 310
           +   LK I 
Sbjct: 187 MAAFLKTIK 195


>gi|289828913|ref|ZP_06546639.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 251

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 77/217 (35%), Gaps = 44/217 (20%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E+++ +V+  R  +    G     G        
Sbjct: 48  GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            + +                 ++        G+        L T+GFV    P I  + +
Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLD 141

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + L  +++++   LV ++    LE        Y    N  ++   YV++ G +
Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWS 194

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328
           D    A  L +  + +    KI L+P++     +++ 
Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVA 231


>gi|116754318|ref|YP_843436.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanosaeta thermophila PT]
 gi|116665769|gb|ABK14796.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Methanosaeta thermophila PT]
          Length = 247

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 32/242 (13%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC   C FC      L    T  EI      +  +   FP     + ++    G    + 
Sbjct: 28  GCPFRCPFCQNAE--LQSGWTPVEI------SELINHLFPRRGAGQSILHEFSGSVCIDS 79

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLA 240
           V++  GEPL   D V  +++   D  GL        + T+G+ P      + EE   M+ 
Sbjct: 80  VVLSGGEPLAQSDAVV-AIAREVDVRGLDLG-----IETNGYYPESLEVLISEEYLDMVF 133

Query: 241 ISLHAVSNDLRNILVPINR--KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           + + A     R  +       +  L  ++ +        +         +  G+  S  +
Sbjct: 134 LDIKAAP---REDMYQRATGIRDALPRVLRSLDVIVE--HGIPFEIRITVFPGM-PSEDE 187

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCE----YLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
              +  +L  +  + +L       G      +    ++D++  ++ +K   ++  IR+ R
Sbjct: 188 LKEVSDLLWRLQPR-SLESVVLQQGHPPRGEFEPVSEEDLIRLAQLLK---FNIRIRSVR 243

Query: 355 GL 356
           G 
Sbjct: 244 GS 245


>gi|328883089|emb|CCA56328.1| Pyruvate formate-lyase activating enzyme [Streptomyces venezuelae
           ATCC 10712]
          Length = 270

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 82/250 (32%), Gaps = 59/250 (23%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC LTC +C+      +RN                     G       VI   G+ +  I
Sbjct: 55  GCPLTCLYCHNPDTWKMRN---------------------GKRTSADAVIAEAGKYVRFI 93

Query: 183 VMMG------MGEPLCNFDNVK--KSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVG 232
            + G       GEPL     V   + L      +GL        L TSGF  V     + 
Sbjct: 94  SVSGGGATVSGGEPLL--QPVFTGELLHRMKHELGL-----HTALDTSGFLGVRATDALL 146

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
            +  ++L + + +                PL   +D  R    L   + +   +V++ G+
Sbjct: 147 RDADLVL-LDIKSWDPAT----YTKVTGRPLAPTLDFARRLADL--GQEVHVRFVLVPGL 199

Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYLC------------SDQKDIVTFS 338
            D P +   +     G+   ++++++PF+     ++                 + +    
Sbjct: 200 TDDPANVEGVAAFAGGLGNVSRVDILPFHTLGEAKWQALAMPFTLHGTPSPTPEQVAAAR 259

Query: 339 ECIKRSGYSS 348
           E  +  G ++
Sbjct: 260 EVFRAHGLNA 269


>gi|302851670|ref|XP_002957358.1| hypothetical protein VOLCADRAFT_119662 [Volvox carteri f.
          nagariensis]
 gi|300257317|gb|EFJ41567.1| hypothetical protein VOLCADRAFT_119662 [Volvox carteri f.
          nagariensis]
          Length = 79

 Score = 43.7 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 9  LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV 44
          L  +   ELE      G        R  Q+W+W+Y 
Sbjct: 16 LKSLTLPELEAWCASEGEEAPAN--RALQLWRWMYA 49


>gi|319791288|ref|YP_004152928.1| radical SAM protein [Variovorax paradoxus EPS]
 gi|315593751|gb|ADU34817.1| Radical SAM domain protein [Variovorax paradoxus EPS]
          Length = 356

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 53/133 (39%), Gaps = 16/133 (12%)

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            L + L  V+ ++R+ ++P     P+   + A     G+    +++  Y++  G+ D+  
Sbjct: 220 TLGMHLEVVTPEVRDRIMPGKASVPVSRYMSAFEAAVGVFGRGQVS-TYIL-AGLGDTRE 277

Query: 298 DA----LNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPI 350
                   L  + +G+   +  +PF P  G           + + +    +     ++ +
Sbjct: 278 AILDTCDQL--LARGVYPFV--VPFVPISGTPLEDHPAPSPEFMKSLLAPLGERVVAAGL 333

Query: 351 RTPRGLDILAACG 363
           R+    DI A CG
Sbjct: 334 RS---ADIKAGCG 343


>gi|169342629|ref|ZP_02863673.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens C
           str. JGS1495]
 gi|169299271|gb|EDS81340.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens C
           str. JGS1495]
          Length = 235

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 88/235 (37%), Gaps = 36/235 (15%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154
           G    +ET+ + +       V  Q GC + C+FC+   T  +      T EE++ ++   
Sbjct: 4   GRIHSLETMGLVDGPGIRFVVFMQ-GCGIRCAFCHNPDTWCKDKGTEYTPEELVNKITRF 62

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
           ++      G                  +   G GEPL   + + + L       G+    
Sbjct: 63  KTYFNASGGG-----------------VTFSG-GEPLLQPEFLLECLK-LCKKEGI---- 99

Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
              TL T+G          E   ++   +  +  +    LV    + P++  ++  +   
Sbjct: 100 -HTTLDTAGVGLGNYEEILEYVDLILFDVKEIDPEKYKNLV----RVPIDKSLEFLK--V 152

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             S  +++   +V++ G  D+  D + + K + G+    K+ L+P++     +Y 
Sbjct: 153 AQSMNKKMWIRHVVVPGYTDNKEDLMRIKKFVDGLNNIEKVELLPYHVLGVNKYE 207


>gi|283856503|ref|YP_163304.2| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|283775507|gb|AAV90193.2| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 263

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 40/216 (18%)

Query: 122 VGCSLTCSFCYTGTQKLVRN---LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
            GC+L C +C+      ++N   +T  E++ +V      L    G   I G         
Sbjct: 48  AGCALRCQYCHNPDSWFLKNGRAVTLAEMMEEVASYADFLKRAGGGITISG--------- 98

Query: 179 ISNIVMMGMGEPLCNFD---NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
                    GEPL   +    + K+                  + T+GF+   A      
Sbjct: 99  ---------GEPLVQPEFTGALLKAAKYL---------GLHTAIDTAGFLGAQADDALLS 140

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              L +      ND R           L+  +   +    L     +   YV++ G+ D+
Sbjct: 141 NTDLVLLDIKAFNDKR---YKALTGVELQPTLAFAKRLAALKK--PVWLRYVLVPGLTDN 195

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYLCS 329
             +  NL      +    +++++PF+     ++  S
Sbjct: 196 FNEIANLADFAATLGNIERVDVLPFHKMGEYKWKAS 231


>gi|241762442|ref|ZP_04760520.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373036|gb|EER62694.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 270

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 40/216 (18%)

Query: 122 VGCSLTCSFCYTGTQKLVRN---LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
            GC+L C +C+      ++N   +T  E++ +V      L    G   I G         
Sbjct: 55  AGCALRCQYCHNPDSWFLKNGRAVTLAEMMEEVASYADFLKRAGGGITISG--------- 105

Query: 179 ISNIVMMGMGEPLCNFD---NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
                    GEPL   +    + K+                  + T+GF+   A      
Sbjct: 106 ---------GEPLVQPEFTGALLKAAKYL---------GLHTAIDTAGFLGAQADDALLS 147

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              L +      ND R           L+  +   +    L     +   YV++ G+ D+
Sbjct: 148 NTDLVLLDIKAFNDKR---YKALTGVELQPTLAFAKRLAALKK--PVWLRYVLVPGLTDN 202

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYLCS 329
             +  NL      +    +++++PF+     ++  S
Sbjct: 203 FNEIANLADFAATLGNIERVDVLPFHKMGEYKWKAS 238


>gi|325847797|ref|ZP_08170019.1| six-Cys-in-45 modification radical SAM protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480815|gb|EGC83868.1| six-Cys-in-45 modification radical SAM protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 461

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 77/224 (34%), Gaps = 27/224 (12%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
            +     +C++    C+L+C +C+       R    E I          + D    + I+
Sbjct: 91  RKTYLKAMCLNVSHTCNLSCEYCFAKEG---RYHGPEAI----------MTDEVAKKSID 137

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFV-- 225
            ++  S      +I   G GEPL N+D VK ++  A       +      TL+T+G +  
Sbjct: 138 FLLENSGSHYNLDIDFFG-GEPLLNWDLVKNTVDYARSKEEEFN-KHFNFTLTTNGMLLD 195

Query: 226 -PNIARVGEEIG-VMLAISLHAV-SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
              I  + + +  V+L++       ++ R      + +   + ++   +        +  
Sbjct: 196 DEKIEYLNKNMKNVVLSLDGRKEKHDEFRK---THDGRGSFDKIVPKFQKLVKARGDKEY 252

Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
                      D   D    + +  G   + +L P       +Y
Sbjct: 253 YMRGTFTANNLDFTEDIKTYLDL--GFK-RTSLEPVVGNNEEDY 293


>gi|182626346|ref|ZP_02954101.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens D
           str. JGS1721]
 gi|177908365|gb|EDT70910.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens D
           str. JGS1721]
          Length = 235

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 86/235 (36%), Gaps = 36/235 (15%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154
           G    +ET+ + +       V  Q GC + C+FC+   T  +      T EE++ ++   
Sbjct: 4   GRIHSLETMGLVDGPGIRFVVFMQ-GCGIRCAFCHNPDTWCKDKGTEYTPEELVNKIKRF 62

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
           ++      G                  +   G GEPL   + + + L       G+    
Sbjct: 63  KTYFNASGGG-----------------VTFSG-GEPLLQPEFLLECLK-LCKKEGI---- 99

Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
              TL T+G          E   ++   +     +    LV +    P++  ++  +   
Sbjct: 100 -HTTLDTAGVGLGNYEEILEYVDLILFDVKETDPEKYKNLVKV----PIDKSLEFLK--V 152

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             S  +++   +V++ G  D+  D + +   + G+    K+ L+P++     +Y 
Sbjct: 153 AQSMNKKMWIRHVVVPGYTDNKEDLMRIKNFVDGLNNIEKVELLPYHVLGVNKYE 207


>gi|229004086|ref|ZP_04161888.1| Radical SAM domain protein [Bacillus mycoides Rock1-4]
 gi|228757184|gb|EEM06427.1| Radical SAM domain protein [Bacillus mycoides Rock1-4]
          Length = 468

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 27/242 (11%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
            +     LC++    C+L+C +C+    K   +             R+++    G   I+
Sbjct: 94  RQTYVKALCLNVAHTCNLSCEYCFASQGKYNGS-------------RAIMSYEVGKRAID 140

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--P 226
            ++  S   +  +I   G GEPL  +  VK+ ++ A           R T +T+G +   
Sbjct: 141 YLLENSGHHRNLDIDFFG-GEPLMAWKVVKQIVAYARSKEKEYKKTFRFTFTTNGMLLND 199

Query: 227 NIARV--GEEIGVMLAISLHAVSND-LRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
            I      E   V+L++      +D LR     +  K   + ++   + +      +   
Sbjct: 200 EITDFLNKEMYNVVLSLDGRKEVHDYLRK---TVTGKGSYDYIVPKFQEFVKSRGDKEYY 256

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECI 341
                     D   D  ++  +  G   K+++ P    P   Y  +++   DI    E +
Sbjct: 257 VRGTYTHNNVDFTNDIFHIADL--GFD-KLSMEPVICNPREPYALTEKDLPDIYNQYEIL 313

Query: 342 KR 343
            +
Sbjct: 314 AK 315


>gi|332157839|ref|YP_004423118.1| hypothetical protein PNA2_0196 [Pyrococcus sp. NA2]
 gi|331033302|gb|AEC51114.1| hypothetical protein PNA2_0196 [Pyrococcus sp. NA2]
          Length = 419

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 89/247 (36%), Gaps = 35/247 (14%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           + ++    + V    GC+++C FC        R       L  V+    L+  F    + 
Sbjct: 109 LIDRGTNLIQVRGSTGCNMSCIFCSVDEGPYSR----TRKLDFVVDVDYLMKWFNWVAEQ 164

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-- 225
           +G  + +         +   GEPL  +  + + +    D   +S     I++ ++G +  
Sbjct: 165 KGKGLEAH--------LDAQGEPLL-YPFIVELVQALRDHPNVSV----ISMQSNGVLLN 211

Query: 226 -PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
              +  + E     + +S+H++  +   +L+   + Y LE +++             +  
Sbjct: 212 DKLVEELAEAGLDRVNLSIHSLDPEKAKMLMGR-KDYDLEHVLEMAEALVNA--GIDVLI 268

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVT 336
             V++ GIND+   A   I+  + I A          N IP+                  
Sbjct: 269 APVIIFGINDNE--AEAFIEFARKIGAGRRWPALGFQNYIPYKFGRNPVIAKPVP--FKE 324

Query: 337 FSECIKR 343
           F E ++R
Sbjct: 325 FYEWLRR 331


>gi|224543792|ref|ZP_03684331.1| hypothetical protein CATMIT_03013 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523283|gb|EEF92388.1| hypothetical protein CATMIT_03013 [Catenibacterium mitsuokai DSM
           15897]
          Length = 255

 Score = 43.7 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 81/242 (33%), Gaps = 49/242 (20%)

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC   C FC+                     ++      P       +       K   
Sbjct: 37  HGCPFRCQFCHNPD---------------TWASQKFEEWTPQQALDRALRFEPYWGKDGG 81

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIG 236
           I + G GEPL   D + +   +A  + G++       + TSG       P  ++  E + 
Sbjct: 82  ITVSG-GEPLVQIDFLLEFFKLAKAA-GIN-----TCIDTSGACFTREEPFFSKFEELMK 134

Query: 237 VM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               L + +  ++++ R+ ++        + ++D  ++   ++ +  I   +V++   +D
Sbjct: 135 YTDLLMVDIKEINDE-RHQVLTGASN---KRVLDMIQYLNDINKS--IWIRHVLVPERSD 188

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
              D   L   +  +    K+ ++P++     ++                 + +   ++ 
Sbjct: 189 FDEDLHALADYIDTLSNVKKVEVLPYHTLGTYKWKELNLEYQLEGIDPPTNERVENANKI 248

Query: 341 IK 342
           + 
Sbjct: 249 LH 250


>gi|242237965|ref|YP_002986146.1| nitrogenase cofactor biosynthesis protein NifB [Dickeya dadantii
           Ech703]
 gi|242130022|gb|ACS84324.1| nitrogenase cofactor biosynthesis protein NifB [Dickeya dadantii
           Ech703]
          Length = 468

 Score = 43.7 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 65/203 (32%), Gaps = 31/203 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C++C         N +   ++ ++L+        P     +   + +   ++S + 
Sbjct: 54  CNLQCNYCNRKYD--CSNESRPGVVSELLM--------PEQAAAKARQVAAAIPQLSVVG 103

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEI--GVML 239
           + G G+PL N      +L +  +         ++ LST+G      + R+ +     V +
Sbjct: 104 IAGPGDPLANMGRTFNTLELLRN----QLPDLKLCLSTNGLMLPDAVDRLLDVGVDHVTV 159

Query: 240 AISLHAVSNDLR--NILVPINRKYPLEMLIDACRHYPGL------SNARRITFEYVMLKG 291
            ++        R    L     +Y      +                   +    V++ G
Sbjct: 160 TLNTLDPDEAARIYAWLWLDGERYTGREAGEMLLARQQEGIRRLTEKGVLVKINSVLIPG 219

Query: 292 INDS-----PRDALNLIKILKGI 309
           IND         A      L  I
Sbjct: 220 INDRSLLQVSEKAREWGAFLHNI 242


>gi|312116276|ref|YP_004013872.1| glycyl-radical enzyme activating protein family [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311221405|gb|ADP72773.1| glycyl-radical enzyme activating protein family [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 304

 Score = 43.3 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 75/242 (30%), Gaps = 45/242 (18%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C           R +T EE+  +V         +       G V  S G  ++   
Sbjct: 95  CVSVCPQDARQLSG--RRMTVEEVSTEVRQ------HWRIFMQSGGGVTLSGGEVLAQPA 146

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEEIGVMLAI 241
             G          +  +     D +G         + T+GF+P  N  R+   I ++L  
Sbjct: 147 FAG---------ALLSA---LHDDLGF-----HTCVDTTGFLPWENFERLLPAIDLILLD 189

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
             H   +  R      N +     +++  R          +     ++   ND+  +   
Sbjct: 190 LKHMDDSRHREATGIGNAR-----ILENARRLGER--GFPVFVRLPLISDYNDTDENLHA 242

Query: 302 LIKILKGI-PAKINLIPFNPWPGCEYLC-----SDQKDIV----TFSECIKRSGYSSPI- 350
           L   +K +  A + ++P++ +   +Y       +    I       +  +   G S  + 
Sbjct: 243 LGAFMKEVGLATLEILPYHEFGVSKYTALGKTYTVHSRIEPKADRAASILDDYGLSVTVA 302

Query: 351 RT 352
           R 
Sbjct: 303 RR 304


>gi|253581396|ref|ZP_04858622.1| iron-sulfur dehydrogenase [Fusobacterium varium ATCC 27725]
 gi|251836760|gb|EES65294.1| iron-sulfur dehydrogenase [Fusobacterium varium ATCC 27725]
          Length = 282

 Score = 43.3 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 70/189 (37%), Gaps = 23/189 (12%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC  G                  LA          E    +       K   I 
Sbjct: 28  CNMNCVFCECGATPK--------------LADKREHFKDIKEVESEIKSVLKDVKPDYIT 73

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI--GVMLAI 241
             G GEP  + D + + ++   D+         + L T+  + N   V  E+    ++  
Sbjct: 74  FSGSGEPTLSKD-LGEIINWIKDNT-----DANVCLITNSLLLNDDEVINEVLRADLIIP 127

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           +L++V +++ + +   ++   + M++   +    + N  +I  E  +++G+ND       
Sbjct: 128 TLNSVDDEIFHKINRPSKDIHISMVMSGLQKLSAVYNG-KIYLETFIIEGLNDGEEHIKK 186

Query: 302 LIKILKGIP 310
           + + LK I 
Sbjct: 187 MAEFLKTIK 195


>gi|269123081|ref|YP_003305658.1| pyruvate formate-lyase activating enzyme [Streptobacillus
           moniliformis DSM 12112]
 gi|268314407|gb|ACZ00781.1| pyruvate formate-lyase activating enzyme [Streptobacillus
           moniliformis DSM 12112]
          Length = 247

 Score = 43.3 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 47/217 (21%)

Query: 123 GCSLTCSFCYT----GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           GC L C +C+       +   R +T EE+  +++  R                    G  
Sbjct: 31  GCPLRCLYCHNVDTWNLKDHKRLMTPEEVFKEIMKVR--------------------GFI 70

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGE 233
            +  V +  GEPL   D + +         G+        + TSG++          + +
Sbjct: 71  KTGGVTVSGGEPLLQSDFIIELFK-LCKEAGI-----HTCIDTSGYIFTEKSKQAIELAD 124

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              VML   +  +  +   +L  +N    L+M       Y    N   +   YV++ G +
Sbjct: 125 L--VML--DIKHIDQEKYKVLTSVNLAPTLKMA-----DYLESINK-PVWLRYVLVPGYS 174

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328
           D P+D  N  K         +++++PF+     ++  
Sbjct: 175 DDPKDLDNWAKYCSKFKNVERVDILPFHQMGTPKWDK 211


>gi|157736727|ref|YP_001489410.1| quinohemoprotein amine dehydrogenase, putative SAM-radical
           dependent activating subunit [Arcobacter butzleri
           RM4018]
 gi|157698581|gb|ABV66741.1| quinohemoprotein amine dehydrogenase, putative SAM-radical
           dependent activating subunit [Arcobacter butzleri
           RM4018]
          Length = 457

 Score = 43.3 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 18/197 (9%)

Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
           V+ E   I       L ++   GC+L+C++CY      ++N  + ++  ++         
Sbjct: 75  VKEEETKIEHFPAKALVLNVTSGCNLSCTYCYKADLTSLKN--SGQMTFEI--------- 123

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRI 217
               + I+     S   K  +I   G GEPL N   +K+ ++ A+D   S GL      +
Sbjct: 124 --AKDAIDMFYKESPYLKEYSITFFG-GEPLSNLPLIKQIIAYANDFFESKGLKIG-YSM 179

Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
           T + +     + R   E  V L IS+    +      V  N K   E +         + 
Sbjct: 180 TSNATLLTDEVIRYLHESKVDLTISIDGPESLHNKTRVYENGKGSYEKVAKNVAKLLDIY 239

Query: 278 NARRITFEYVMLKGIND 294
             R +     + +G+ D
Sbjct: 240 KNRTVGARVTLTRGVTD 256


>gi|212692834|ref|ZP_03300962.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855]
 gi|237724884|ref|ZP_04555365.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. D4]
 gi|265754729|ref|ZP_06089781.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           3_1_33FAA]
 gi|212664623|gb|EEB25195.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855]
 gi|229436622|gb|EEO46699.1| pyruvate-formate lyase-activating enzyme [Bacteroides dorei
           5_1_36/D4]
 gi|263234843|gb|EEZ20411.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           3_1_33FAA]
          Length = 302

 Score = 43.3 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 19/106 (17%)

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPF 318
           P E++++  R                +++G+N   ++     + L  +P     INL+P+
Sbjct: 197 PNELILENIRRVAEA--GFPYYIRIPLIEGVNADEKNIKQSAEFLASLPRHPEIINLLPY 254

Query: 319 NPW--------------PGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           +                 G +     ++      + +   G    I
Sbjct: 255 HDIGKGKHTKLGSIYNPKGYKMQTPSEEVQQQCIQILTDYGLKVTI 300


>gi|323705356|ref|ZP_08116931.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535258|gb|EGB25034.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 473

 Score = 43.3 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 33/243 (13%)

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
           +PEI+ E ++ D T                 +E + I         V+   GC+  C++C
Sbjct: 142 FPEILQEALNSDTTV------IDVWDDNSNIVEDIPIRRAEGLKAWVNIIYGCNNFCTYC 195

Query: 132 YTGT-QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
                +   R+   ++I+ ++   +SL  +      + G  + S G  +S  V       
Sbjct: 196 IVPYVRGRERSREPKDIIDEI---KSLADEGFKEITLLGQNVNSYGNDLSQKVDFA---- 248

Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV---GEEIGVMLAISLHAVS 247
                     L + ++  G+     RI   TS       ++     ++   +   LH   
Sbjct: 249 --------DLLYMINNINGI----ERIRFMTSHPKDISDKLIFAIRDLD-KVCEHLHLPV 295

Query: 248 NDLRNILV-PINRKYPLEMLIDACRHYPGLSNARRITFEYVM-LKGINDSP-RDALNLIK 304
               N ++  +NRKY  E  ++             IT + ++   G  D   +D L+L+K
Sbjct: 296 QSGSNRILEKMNRKYTRERYLEIIEKLRDNIPDIAITTDIIVGFPGETDEDFQDTLDLVK 355

Query: 305 ILK 307
            +K
Sbjct: 356 KVK 358


>gi|237709522|ref|ZP_04540003.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           9_1_42FAA]
 gi|229456578|gb|EEO62299.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           9_1_42FAA]
          Length = 300

 Score = 43.3 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 19/106 (17%)

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPF 318
           P E++++  R                +++G+N   ++     + L  +P     INL+P+
Sbjct: 195 PNELILENIRRVAEA--GFPYYIRIPLIEGVNADEKNIKQSAEFLASLPRHPEIINLLPY 252

Query: 319 NPW--------------PGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           +                 G +     ++      + +   G    I
Sbjct: 253 HDIGKGKHTKLGSIYNPKGYKMQTPSEEVQQQCIQILTDYGLKVTI 298


>gi|307825620|ref|ZP_07655837.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
 gi|307733197|gb|EFO04057.1| Radical SAM domain protein [Methylobacter tundripaludum SV96]
          Length = 367

 Score = 43.3 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 16/142 (11%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+       L + L AV+ ++RN ++P     PLE  +DA      +     ++  Y+
Sbjct: 221 FKRMKAAGIDSLGMHLEAVTPEVRNRIMPGKAGVPLERYMDAFDAAVSVFGRGEVS-TYI 279

Query: 288 MLKGINDSPRDALNLIKIL--KGI-PAKINLIPFNPWPGCEYLCSDQKDIVTFSE----C 340
           +  G+ D+    L++ K L  KG+ P  +  IP    P   Y   D + +    +     
Sbjct: 280 L-AGLGDTVEAILSVSKQLIDKGVYPFVVPFIPITGTPLAHYPSPDPRFMQDILQPLGAM 338

Query: 341 IKRSGYSSPIRTPRGLDILAAC 362
           +K++G        R  D+ A C
Sbjct: 339 LKQAGL-------RSADMKAGC 353


>gi|289523143|ref|ZP_06439997.1| glutamate 5-kinase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503686|gb|EFD24850.1| glutamate 5-kinase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 329

 Score = 43.3 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 65/204 (31%), Gaps = 37/204 (18%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
           ++P     +L     VGC++ C FC                  Q     +          
Sbjct: 67  FLPGMDVLSL---GSVGCNMRCPFC------------------QNWHISTWSPQIKLSRI 105

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
               ++  V +     V     EPL +++ + +++ +            ++ L T+G + 
Sbjct: 106 DPLELLSLVKKYNVTAVAFTYNEPLISYEYLLEAIPLLKKEN------VKVVLVTNGLIN 159

Query: 227 N--IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
              +  +   I     + L   + +    L        L+ ++   +     S    I  
Sbjct: 160 TLPLKEIAHRIDAA-NVDLKTFNEETYKKL-----GGDLKTVLKTLQ--ILKSFNVHIEI 211

Query: 285 EYVMLKGINDSPRDALNLIKILKG 308
            ++++ GIND   +   L   + G
Sbjct: 212 THLLVTGINDDLGEFEALCSWIAG 235


>gi|301058540|ref|ZP_07199547.1| nitrogenase cofactor biosynthesis protein NifB [delta
           proteobacterium NaphS2]
 gi|300447386|gb|EFK11144.1| nitrogenase cofactor biosynthesis protein NifB [delta
           proteobacterium NaphS2]
          Length = 420

 Score = 43.3 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 67/179 (37%), Gaps = 22/179 (12%)

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           + IS + + G G+P  N D   ++L++  +          +  +  G  P I ++ +   
Sbjct: 71  KNISVVGIAGPGDPFANPDETMETLTLIREKYPEMI--CCLATNGLGIGPYIDQLADLNI 128

Query: 237 VMLAISLHAVSND--------LR--NILVPINRKYPL--EMLIDACRHYPGLSNARRITF 284
             + I+L+A+  +        +R    L+   + + +  E  ++A               
Sbjct: 129 SHVTITLNAIDAEIGQKIYSYIRYGKKLLSPKKGFDILLEKQLEAIVRLKEK--GITTKI 186

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTFSE 339
             +++ GIN+       + + +  +   I N IPF P  G  +       ++ +    +
Sbjct: 187 NSIIIPGINEH--HIPAVAEKMSEMGVDILNCIPFYPNKGAAFANLEEPSKEMVAEIRK 243


>gi|254172055|ref|ZP_04878731.1| radical SAM domain protein [Thermococcus sp. AM4]
 gi|214033951|gb|EEB74777.1| radical SAM domain protein [Thermococcus sp. AM4]
          Length = 419

 Score = 43.3 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 82/230 (35%), Gaps = 25/230 (10%)

Query: 85  TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
           T++ +L          +      + ++    + +    GC+L+C FC        R    
Sbjct: 86  TKRKVLYIHEGLDVPLLGYNAFGLIDRGTNLIQIRGVSGCNLSCIFCSVDEGPYSR---- 141

Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV--KKSLS 202
              L  V+    L+  F     I+G  + +         + G GEPL     V   ++L 
Sbjct: 142 TRKLDYVVDIDYLMKWFDEVARIKGKGLEAH--------LDGQGEPLIYPFRVELVQALR 193

Query: 203 IASDSMGLSFSKR-RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261
                     S +   TL T   V     + E     + +S+H++  +   +L+   + Y
Sbjct: 194 --EHPNVSVISMQSNGTLLTDKLV---EELAEAGLDRVNLSIHSLDPEKAKMLM-GMKSY 247

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
            LE +++             +    V++ GIND   +A   I+  + I A
Sbjct: 248 DLEHVLEMAEALVNA--GIDVLIAPVIIFGIND--DEAEAFIEFARKIGA 293


>gi|289192490|ref|YP_003458431.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938940|gb|ADC69695.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 433

 Score = 43.3 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 91/262 (34%), Gaps = 49/262 (18%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           + E+ R  + V    GC+L C FC     +  +                   D     + 
Sbjct: 102 LIERGRNIIQVRGHCGCNLNCIFCSVDEGEFSK-----------TRKNDYYVDLDYLIEN 150

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNF---DNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
              ++     K     + G GEP   +   D V++   I     G+      +++ T+G 
Sbjct: 151 YKKIVNFKENKFIEAHLDGQGEPSLYYPLVDLVQELAEINKKGNGI------VSMQTNGT 204

Query: 225 V---PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           V     I  + E     + +S++A  ++    ++   R Y +E ++D   +    ++   
Sbjct: 205 VLNYKLIDELAEAGLHRINLSINA-LDERMAKMLSGRRDYDIEKILDIAEYI--KNSKIH 261

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKI--NLIPFNPWPGCE-----------YL- 327
           +    ++L  IND   +   +I     +  ++  N+I  NP  G +           Y  
Sbjct: 262 LLIAPLLLPNIND--EEFKRVIDYAVDLDLRVKQNII--NPLTGKKDPILGCQLCRVYQL 317

Query: 328 --CSDQKDI---VTFSECIKRS 344
                +  +     F + +++ 
Sbjct: 318 GRRPKKMKVWDFEKFYDLLRKY 339


>gi|110800676|ref|YP_695803.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           ATCC 13124]
 gi|110675323|gb|ABG84310.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           ATCC 13124]
          Length = 235

 Score = 43.3 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 86/235 (36%), Gaps = 36/235 (15%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154
           G    +ET+ + +       V  Q GC + C+FC+   T  +      T EE++ ++   
Sbjct: 4   GRIHSLETMGLVDGPGIRFVVFMQ-GCGIRCAFCHNPDTWCKDKGTEYTPEELVNKIKRF 62

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
           ++      G                  +   G GEPL   + + + L       G+    
Sbjct: 63  KTYFNASGGG-----------------VTFSG-GEPLLQPEFLLECLK-LCKKEGI---- 99

Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
              TL T+G          E   ++   +     +    LV    + P++  ++  +   
Sbjct: 100 -HTTLDTAGVGLGNYEEILEYVDLILFDVKETDPEKYKNLV----RVPIDKSLEFLK--V 152

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             S  +++   +V++ G  D+  D + +   + G+    K+ L+P++     +Y 
Sbjct: 153 AQSMNKKMWIRHVVVPGYTDNKEDLMRIKNFVDGLNNIEKVELLPYHVLGVNKYE 207


>gi|110596760|ref|ZP_01385050.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341447|gb|EAT59907.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium
           ferrooxidans DSM 13031]
          Length = 424

 Score = 43.3 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 63/175 (36%), Gaps = 25/175 (14%)

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239
           + + G G+P  N +   ++L +          +  + ++T+G   +P I  + E     +
Sbjct: 78  VGIAGPGDPFANPNETMETLRLVRAKY----PEMLLCVATNGLDLLPYIDELAELQVSHV 133

Query: 240 AISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEYV 287
            I+++A+  ++ + +    R               +   ++A +               +
Sbjct: 134 TITINAIDPEIGSEIYAWVRYNKKMYRDIDAARVLIGNQLEALKRLKEA--GVTAKVNSI 191

Query: 288 MLKGINDS--PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSEC 340
           ++ GIND+     A  + ++   I    N +P+       +    +  +   +E 
Sbjct: 192 IIPGINDTHVIEVARKVAELGADIL---NCMPYYSTTETVFENIPEPSVDMVAEI 243


>gi|227494256|ref|ZP_03924572.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces
           coleocanis DSM 15436]
 gi|226831990|gb|EEH64373.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces
           coleocanis DSM 15436]
          Length = 296

 Score = 43.3 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 77/245 (31%), Gaps = 46/245 (18%)

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC L C +C+      +R+ TA      V                     P        
Sbjct: 81  AGCPLRCLYCHNPDTMKMRDGTA------VYA--------DELIKRMERYAPVFKASNGG 126

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIG-VM 238
           +   G GEPL     + K L  A+   G+        + TSGF+       + E +  V+
Sbjct: 127 VTFSG-GEPLMQPAFLLKLLK-AAKERGI-----HTAIDTSGFLGAHASDELLENVDLVL 179

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           L +            +        LE  +   R    ++   RI   +V++ G+ DS  +
Sbjct: 180 LDVKSGLPD------VYEKTTGRQLEPTLKFGRRLADMNK--RIWIRFVLVPGLTDSEEN 231

Query: 299 ALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSECIKRS 344
              +  I+    +  ++ ++PF+          G EY         ++      E  +  
Sbjct: 232 VNAVADIVASWESVERVEVLPFHQMARDKWAELGMEYELSDVQPPSKEAAEAAREIFRSR 291

Query: 345 GYSSP 349
           G    
Sbjct: 292 GLLVF 296


>gi|225871377|ref|YP_002747324.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
           equi 4047]
 gi|225700781|emb|CAW95452.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
           equi subsp. equi 4047]
          Length = 257

 Score = 43.3 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 75/256 (29%), Gaps = 59/256 (23%)

Query: 123 GCSLTCSFCYT------------GTQKLVRNL-----TAEEILLQVLLARSLLGDFPGCE 165
           GC L C +C               T  L   +     T EEI+ +VL       +  G  
Sbjct: 29  GCPLRCPWCANPESQKTLPEKMLSTDGLKTEIVGQEKTVEEIIAEVLKDLDFYEESGGGM 88

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
            + G  I +       ++     E L        ++         +F+K         +V
Sbjct: 89  TLSGGEIFAQFDFALALLKAAKAEGLH------TAIETT------AFAKHEQFAELINYV 136

Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
             I    +          H     +RN L+  N  Y  EM  +     P           
Sbjct: 137 DFIY--TDLKHYNR--LKHTKVTGVRNDLIIKNIHYAFEMGKEVVLRIP----------- 181

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL---CS---------DQK 332
             ++   NDS  DA    ++   +    + L+PF+ +   +Y     S           +
Sbjct: 182 --VIPNFNDSLEDAKAFSELFNQLNINQVQLLPFHQFGENKYKLLGRSYDMADAVAYHPE 239

Query: 333 DIVTFSECIKRSGYSS 348
           D+V + +         
Sbjct: 240 DLVDYQQIFLNHHIHC 255


>gi|168214980|ref|ZP_02640605.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           CPE str. F4969]
 gi|170713601|gb|EDT25783.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           CPE str. F4969]
          Length = 235

 Score = 43.3 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 88/235 (37%), Gaps = 36/235 (15%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154
           G    +ET+ + +       V  Q GC + C+FC+   T  +      T EE++ ++   
Sbjct: 4   GRIHSLETMGLVDGPGIRFVVFMQ-GCGIRCAFCHNPDTWCKDKGTEYTPEELVNKIKRF 62

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
           ++      G                  +   G GEPL   + + + L       G+    
Sbjct: 63  KTYFNASGGG-----------------VTFSG-GEPLLQPEFLLECLK-LCKKEGI---- 99

Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
              TL T+G          E   ++   +  +  +    LV    + P++  ++  +   
Sbjct: 100 -HTTLDTAGVGLGNYEEILEYVDLILFDVKEIDPEKYKNLV----RVPIDKSLEFLK--V 152

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             S  +++   +V++ G  D+  D + + K + G+    K+ L+P++     +Y 
Sbjct: 153 AQSMNKKMWIRHVVVPGYTDNKEDLMRIKKFVDGLNNIEKVELLPYHVLGVNKYE 207


>gi|160937727|ref|ZP_02085087.1| hypothetical protein CLOBOL_02620 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439372|gb|EDP17124.1| hypothetical protein CLOBOL_02620 [Clostridium bolteae ATCC
           BAA-613]
          Length = 259

 Score = 43.3 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 83/248 (33%), Gaps = 38/248 (15%)

Query: 88  WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTA 144
           +L +  +  IG    IE+ +      G   V    GC + C +C+   T   K    +TA
Sbjct: 2   FLRKEHSLMIGRVHSIES-FGTVDGPGIRMVIFLSGCPMRCLYCHNPDTWDPKGGSPMTA 60

Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204
           EEIL Q   AR                          I + G GEPL     V +    A
Sbjct: 61  EEILDQYEQARPFYKKG-------------------GITVSG-GEPLMQIGFVTELFEKA 100

Query: 205 SDSM---GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261
             S     L  S       +   + +  R+     ++L + +  +       L       
Sbjct: 101 KKSGIHTCLDTSGITFNPGSQAVMAHFDRLLASTDLIL-LDIKHIDPKEHVKLCAQ---- 155

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI---LKGIPAKINLIPF 318
             +  I A   Y        +   +V++ GI D       L +    LK + A ++++P+
Sbjct: 156 -PQDNILAFAAYLEKK-QIPVWIRHVVVPGITDREEYLYRLGRYLGTLKNVKA-LDVLPY 212

Query: 319 NPWPGCEY 326
           +     +Y
Sbjct: 213 HDMGKAKY 220


>gi|4325121|gb|AAD17269.1| NifB [Frankia sp. EuIK1]
          Length = 658

 Score = 43.3 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 86/230 (37%), Gaps = 47/230 (20%)

Query: 118 VSSQVGCSLTCSFC-------YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
           V+   GC++ C++C             +  +L   E                     +  
Sbjct: 67  VAVAPGCNIQCNYCNRKYDCANESRPGVTSDLLTPE-----------------DALAKVK 109

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNI 228
           ++ S  +++S + + G G+PL N     ++L + +          ++ LST+G     ++
Sbjct: 110 LVASEIKQMSVLGIAGPGDPLANPKRTFRTLELVARD----CPDIKLCLSTNGLTLPDHV 165

Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYP--------LEMLIDACRHYPGL 276
            R+       + I+++ +  ++  ++ P      +KY          E  ++        
Sbjct: 166 DRIAALNVDHVTITINMIDPEVGELIYPWVAYKGKKYTGRERSKILSERQLEGLAMLAER 225

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325
               ++    VM+ G+ND     + + K ++G+ A + N++P    P   
Sbjct: 226 KILAKVN--SVMIPGVND--EHLVEVSKTVRGLGAFLHNVMPLVSAPEHG 271


>gi|114566578|ref|YP_753732.1| pyruvate formate lyase activating enzyme [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337513|gb|ABI68361.1| pyruvate formate lyase activating enzyme [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 246

 Score = 43.3 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 76/234 (32%), Gaps = 40/234 (17%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N    E+    L A+    +     ++     P        +
Sbjct: 27  GCHLRCKYCH--------NPDTWELKS--LSAQEYSPE--ELMEVIRRSKPYFIASGGGL 74

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI- 241
              G GEPL   D+  K++ +       + S     + TS +V   A +       L + 
Sbjct: 75  TFSG-GEPLL-HDDFIKAVFLLCREE--NISTA---IDTSLYVKPAALLNVMPLTNLVLA 127

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
            +  ++ +    L  ++    L  L          S+   I   YV++    D+  D   
Sbjct: 128 DIKHINEEKSRCLTGMSNSLNLSNLK------LIDSHDIPIWIRYVIIPAWTDALEDLEE 181

Query: 302 LIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
           +   +  +    +I+L+P++     ++                 + +  F   I
Sbjct: 182 MAAFVGQLEHVERIDLLPYHSLGKHKWDLLGYNYELNGVTTHSPEALEQFKNII 235


>gi|118444335|ref|YP_877304.1| glycerol dehydratase activator [Clostridium novyi NT]
 gi|118134791|gb|ABK61835.1| glycerol dehydratase activator [Clostridium novyi NT]
          Length = 304

 Score = 43.3 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 16/84 (19%)

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKIN---LIPFNPWPGCEY------------ 326
           I     +++G N   +   ++ +  K +  K+N   L+P++ +   +Y            
Sbjct: 220 IIIRVPVIEGFNSDEKSIRDIAEFAKTLN-KVNRIDLLPYHSYGENKYETIGRNYFLKDL 278

Query: 327 LCSDQKDIVTFSECIKRSGYSSPI 350
                  +  F + ++  G    I
Sbjct: 279 KPPSDDKMNYFKKIVEDMGLICTI 302


>gi|320526814|ref|ZP_08028004.1| pyruvate formate-lyase 1-activating enzyme [Solobacterium moorei
           F0204]
 gi|320132782|gb|EFW25322.1| pyruvate formate-lyase 1-activating enzyme [Solobacterium moorei
           F0204]
          Length = 242

 Score = 43.3 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 82/242 (33%), Gaps = 53/242 (21%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS-- 180
           GC++ C +C+        N    E+           G+    E++    +      ++  
Sbjct: 27  GCNMRCKYCH--------NPDTWEMAG---------GELYTAEEVLQKALRYKNYWVNGG 69

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEI 235
            I + G GE L   D + +     +   G+       TL T+G       P  ++    +
Sbjct: 70  GITVSG-GEALLQMDFMIELFE-LAHKQGI-----HCTLDTAGNPFTYEEPFFSKFERLM 122

Query: 236 GVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
            V   +   L  + + +   L  ++        I  C  Y    +   +   +V++ GI 
Sbjct: 123 KVTDLVLFDLKEIDDKVHRYLTGVSN-----ENILECAKYLS-DHHIPMWIRHVLVPGIT 176

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339
            +  D   L + +  + +  ++ ++P++     +Y                ++ I T  +
Sbjct: 177 ANKEDLQKLREFIDTLDSVERVEVLPYHVLGIPKYEKMGISYPLMDTPQPTKEQIETAEK 236

Query: 340 CI 341
            +
Sbjct: 237 IL 238


>gi|168185707|ref|ZP_02620342.1| pyruvate formate-lyase 2-activating enzyme [Clostridium botulinum C
           str. Eklund]
 gi|169296263|gb|EDS78396.1| pyruvate formate-lyase 2-activating enzyme [Clostridium botulinum C
           str. Eklund]
          Length = 304

 Score = 43.3 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 16/84 (19%)

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKIN---LIPFNPWPGCEY------------ 326
           I     +++G N   +   ++ +  K +  K+N   L+P++ +   +Y            
Sbjct: 220 IIIRIPVIEGFNSDEKSIRDIAEFAKTLN-KVNRIDLLPYHSYGENKYETIGRNYFLKNL 278

Query: 327 LCSDQKDIVTFSECIKRSGYSSPI 350
                  I  F E ++  G S  I
Sbjct: 279 KPPSNDKINYFKEIVEGMGLSCTI 302


>gi|167627832|ref|YP_001678332.1| lysine 2,3-aminomutase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597833|gb|ABZ87831.1| Lysine 2,3-aminomutase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 328

 Score = 43.3 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 71/221 (32%), Gaps = 56/221 (25%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
            K  G + + SQ  C++ C +C+        N+                   PG +D   
Sbjct: 97  HKYHGRVLLISQTSCAIHCRYCFRKEFDYKENI-------------------PGRKDWLK 137

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSFSKRRITLSTSGFV 225
                   +    V++  G+PL N D V +     +   S          RI +      
Sbjct: 138 AFEYIANDQTIEEVILSGGDPLLNNDEVLEFFIENIQRISHIKRFRI-HSRIPV--VLPE 194

Query: 226 PNIARVG-----EEIGVMLAISLHAVS---NDLRNILVPINRKYPLEMLIDACRHYPGLS 277
               R+        +  +L I ++  +   + +R +L  I++                  
Sbjct: 195 RMTNRLLKILSEHRLDTVLVIHVNHPNELDDGIREVLKEIHK------------------ 236

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           +   I  +  +LK IND       L   L  I AK+  IP+
Sbjct: 237 HGIIILNQSTLLKDINDDANVLYALSTKL--INAKV--IPY 273


>gi|251780075|ref|ZP_04822995.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084390|gb|EES50280.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 310

 Score = 43.3 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 69/198 (34%), Gaps = 26/198 (13%)

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
           E     S  R+ +  V +  GEPL   +    +L I      +       T+ T+G+V  
Sbjct: 121 ELNKDSSQFRRSNGGVTLSGGEPLLQHEF---ALEILKGCKRIGI---HTTIETTGYVKK 174

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
                    V L +      N+    +  +     +  +++  +    L  +  I     
Sbjct: 175 EIFKKIAPWVDLVLLDIKTLNED-KHIKYVGASNKI--ILENAKSISELVTSTIIRVP-- 229

Query: 288 MLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYLC-------------SDQK 332
           ++   N   +   ++ K  K +    +I+L+P++     +Y C               ++
Sbjct: 230 VIPQFNCDEKSIQDIAKFTKSLNNITEIHLLPYHKLGLNKYDCLGKEYLMKNDINTPSEE 289

Query: 333 DIVTFSECIKRSGYSSPI 350
            ++ F + ++  G +  I
Sbjct: 290 VMLNFKKIVEDIGLTCNI 307


>gi|195978911|ref|YP_002124155.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975616|gb|ACG63142.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 289

 Score = 43.3 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 75/256 (29%), Gaps = 59/256 (23%)

Query: 123 GCSLTCSFCYT------------GTQKLVRNL-----TAEEILLQVLLARSLLGDFPGCE 165
           GC L C +C               T  L   +     T EEI+ +VL       +  G  
Sbjct: 61  GCPLRCPWCANPESQKTLPEKMLSTDGLKTEIVGQEKTVEEIIAEVLKDLDFYEESGGGM 120

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
            + G  I +       ++     E L        ++         +F+K         +V
Sbjct: 121 TLSGGEIFAQFDFALALLKAAKAEGLH------TAIETT------AFAKHEQFAELINYV 168

Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
             I    +          H     +RN L+  N  Y  EM  +     P           
Sbjct: 169 DFIY--TDLKHYNR--LKHTKVTGVRNDLIIKNIHYAFEMGKEIVLRIP----------- 213

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL---CS---------DQK 332
             ++   NDS  DA    ++   +    + L+PF+ +   +Y     S           +
Sbjct: 214 --VIPNFNDSLEDAKAFSELFNQLNINQVQLLPFHQFGENKYKLLGRSYEMADVLAYHPE 271

Query: 333 DIVTFSECIKRSGYSS 348
           D+V + +         
Sbjct: 272 DLVDYQQIFLNHHIHC 287


>gi|322385886|ref|ZP_08059528.1| pyruvate formate-lyase activating enzyme [Streptococcus cristatus
           ATCC 51100]
 gi|321270065|gb|EFX52983.1| pyruvate formate-lyase activating enzyme [Streptococcus cristatus
           ATCC 51100]
          Length = 265

 Score = 43.3 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 67/213 (31%), Gaps = 33/213 (15%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E+                    E +           I
Sbjct: 37  GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDILQEALRYKGFWGNKGGI 83

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237
            + G GE L   D +       + +  L       TL T           + +  + + V
Sbjct: 84  TVSG-GEALLQIDFLIAF---FTKAKELGI---HCTLDTCALPFRNTPRYLEKFNKLMAV 136

Query: 238 M-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             L +      N+ ++ +V           I AC  Y      + +   +V++ G+ D  
Sbjct: 137 TDLVLLDIKEINEAQHRIVTTQTN----KNILACAKYLS-DIGKPVWIRHVLVPGLTDRD 191

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
            D + L K +K +    K  ++P++     ++ 
Sbjct: 192 EDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224


>gi|254167459|ref|ZP_04874311.1| radical SAM domain protein [Aciduliprofundum boonei T469]
 gi|197623722|gb|EDY36285.1| radical SAM domain protein [Aciduliprofundum boonei T469]
          Length = 366

 Score = 43.3 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 64/201 (31%), Gaps = 50/201 (24%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C +C    +K+ R+         V+ A  +         +E  +I + G  I+   
Sbjct: 48  CHAGCFYCPLSKEKMNRD---------VIFADEMPVHSDDDVLLEARLIDAEGTGITG-- 96

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST-SGFVPNIARVGE--------E 234
               G+P+   D V   + +  D++G    +  I L T SG    I ++ +         
Sbjct: 97  ----GDPIEMVDRVIHYIHLLKDNLGE---EHHIHLYTASGSKEKIEKLADVGLDEIRFH 149

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               L   +     + R         + +E  +D                E  +   + D
Sbjct: 150 PPPQLWTKMQGSIYEKRLN-------WAIESGMDTG-------------IEVPVFPDMKD 189

Query: 295 SPRDALNLIKILKGIPAKINL 315
                + L+K    +   +NL
Sbjct: 190 EL---IALVKFANDMGVFVNL 207


>gi|225869370|ref|YP_002745318.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702646|emb|CAX00721.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
           equi subsp. zooepidemicus]
          Length = 257

 Score = 43.3 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 75/256 (29%), Gaps = 59/256 (23%)

Query: 123 GCSLTCSFCYT------------GTQKLVRNL-----TAEEILLQVLLARSLLGDFPGCE 165
           GC L C +C               T  L   +     T EEI+ +VL       +  G  
Sbjct: 29  GCPLRCPWCANPESQKTLPEKMLSTDGLKTEIVGQEKTVEEIIAEVLKDLDFYEESGGGM 88

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
            + G  I +       ++     E L        ++         +F+K         +V
Sbjct: 89  TLSGGEIFAQFDFALALLKAAKAEGLH------TAIETT------AFAKHEQFAELINYV 136

Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
             I    +          H     +RN L+  N  Y  EM  +     P           
Sbjct: 137 DFIY--TDLKHYNR--LKHTKVTGVRNDLIIKNIHYAFEMGKEIVLRIP----------- 181

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL---CS---------DQK 332
             ++   NDS  DA    ++   +    + L+PF+ +   +Y     S           +
Sbjct: 182 --VIPNFNDSLEDAKAFSELFNQLNINQVQLLPFHQFGENKYKLLGRSYEMADVLAYHPE 239

Query: 333 DIVTFSECIKRSGYSS 348
           D+V + +         
Sbjct: 240 DLVDYQQIFLNHHIHC 255


>gi|229084333|ref|ZP_04216614.1| Radical SAM domain protein [Bacillus cereus Rock3-44]
 gi|228698990|gb|EEL51694.1| Radical SAM domain protein [Bacillus cereus Rock3-44]
          Length = 468

 Score = 43.3 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 86/242 (35%), Gaps = 27/242 (11%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
            +     LC++    C+L+C +C+    K   +             R+++    G   I+
Sbjct: 94  RKTYVKALCLNVAHTCNLSCEYCFASQGKYNGS-------------RAIMSYEVGKRAID 140

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--P 226
            ++  S   +  +I   G GEPL  +  VK+ ++ A           R T +T+G +   
Sbjct: 141 YLLENSGHHRNLDIDFFG-GEPLMAWKVVKQIVAYARSKEKEYKKTFRFTFTTNGMLLND 199

Query: 227 NIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
            I     +    + +SL     V N LR     +  K   + ++   + +      +   
Sbjct: 200 EITDFLNKEMYNVVLSLDGRKEVHNHLRK---TVTGKGSYDYIVPKFQKFVKKRGDKEYY 256

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECI 341
                     D   D  ++  +  G   K+++ P    P   Y  +++   DI    E +
Sbjct: 257 VRGTYTHNNIDFTNDIFHIADL--GFD-KLSMEPVICNPREPYALTEEDLPDIYNQYEIL 313

Query: 342 KR 343
            +
Sbjct: 314 AK 315


>gi|21228570|ref|NP_634492.1| metallo cofactor biosynthesis protein [Methanosarcina mazei Go1]
 gi|20907062|gb|AAM32164.1| metallo cofactor biosynthesis protein [Methanosarcina mazei Go1]
          Length = 217

 Score = 43.3 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 64/184 (34%), Gaps = 25/184 (13%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           I  ++   L ++    CS  C FC       +RN         V      L   P  E+I
Sbjct: 15  IYYEAHNNLYLNLTNRCSADCIFC-------IRNFADG-----VYGYNLRLSKEPSTEEI 62

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG---- 223
              +      K   IV  G+GEP    D V         + GL     R+ L T+G    
Sbjct: 63  IEALEGLDLSKYREIVFTGLGEPTLRLDVVLAVTRWL-KNQGL-----RVRLDTNGHAAL 116

Query: 224 FVPNIARVGEEIGVML---AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
             P +  + E     L   ++SL+A S +  N L     K     ++D  R       + 
Sbjct: 117 INPKLDVIAELKKAGLDSVSVSLNAESEEKYNKLCRPVHKNAYRAMLDFVRGAKEAGIST 176

Query: 281 RITF 284
           R+T 
Sbjct: 177 RVTV 180


>gi|242399892|ref|YP_002995317.1| MooA-like molybdenum cofactor biosynthesis protein A related
           [Thermococcus sibiricus MM 739]
 gi|242266286|gb|ACS90968.1| MooA-like molybdenum cofactor biosynthesis protein A related
           [Thermococcus sibiricus MM 739]
          Length = 419

 Score = 43.0 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 79/207 (38%), Gaps = 25/207 (12%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           + ++    + V    GC+++C FC        R      IL  V+    LL  F      
Sbjct: 109 LIDRGTNLIQVRGSTGCNVSCIFCSVDEGPYSR----TRILDYVVDVDYLLKWFNEVAQF 164

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-- 225
           +G  + +         + G GEPL     V   +      +  + +   I++ ++G +  
Sbjct: 165 KGKRLEAH--------LDGQGEPL-----VYPFIVELVQGLRENPNVSVISMQSNGALLN 211

Query: 226 -PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
              I  + E     + +S+H+   +   +L+   + Y L  +++             + F
Sbjct: 212 DKLIEELAEAGLDRVNLSIHSFDPEKAKMLM-GMKDYDLNHVLEMAEALINA--GIDVLF 268

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPA 311
             V++ GIND   +A + I+  + I A
Sbjct: 269 APVIIFGIND--MEAESFIEFARKIGA 293


>gi|108803860|ref|YP_643797.1| GTP cyclohydrolase subunit MoaA [Rubrobacter xylanophilus DSM 9941]
 gi|108765103|gb|ABG03985.1| GTP cyclohydrolase subunit MoaA [Rubrobacter xylanophilus DSM 9941]
          Length = 328

 Score = 43.0 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 70/212 (33%), Gaps = 38/212 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C +C     K                           E++       +   ++ + 
Sbjct: 23  CNFRCQYCMPEDIKFQ-----------------DKSHILTLEEMLTFAEACLALGVTKVR 65

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAI 241
           + G GEPL     V K +    +          +T++T+G++   N+  + E     + I
Sbjct: 66  VTG-GEPLV-RRGVVKFVGWLKE-----LGFDEVTMTTNGYLLKENLEGLVEAGLDRINI 118

Query: 242 SLHAVSNDLRNILVPINRKYPL-EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           SL  +  +    +   N  + + E ++ A       +    +    V ++GIND   +  
Sbjct: 119 SLDTLQPEKFAFITRRNHFHRVWEAIMAAL-----KTPLSPVKINAVAMRGIND--DEIP 171

Query: 301 NLIKILKGIPAKINLI---PFN-PWPGCEYLC 328
            + ++    P  +  I   P N    G  +  
Sbjct: 172 EMARLTLRYPMHVRFIELMPLNGDTDGSRFRK 203


>gi|171184989|ref|YP_001793908.1| radical SAM domain-containing protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170934201|gb|ACB39462.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 266

 Score = 43.0 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 78/231 (33%), Gaps = 53/231 (22%)

Query: 123 GCSLTCSFCYTGT----------QKLV--RNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
           GC+  C +C                L   R+LT  E++  V    S L +    E + G 
Sbjct: 22  GCNYVCPWCIRRLTPWDHHLPDAGGLKTRRHLTLGELVEVV----SGLRERGAVEAVLGG 77

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230
             P+V  ++  +V    G          + + I +   G S S+  + +           
Sbjct: 78  GEPTVDPELPQVVKTLAG---------LR-VRILT--NGFSISEELLGV----------- 114

Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
           +       + +S+  +       L    +  PL  ++   +          + FE V++ 
Sbjct: 115 LRSCPACEVVVSVKTLDPA--RHLAYTGK--PLGPVLANVKRLVEA--GVAVKFETVLIP 168

Query: 291 GINDSPRDALNLIKIL---KGIPAKINLI--PFNPWPGCEYLCSDQKDIVT 336
           G+ND   D   + + +    G  A   LI  P  P PG  +     +++  
Sbjct: 169 GLND-VEDVEEIARYIGEVAGPDAV--LIIDPLIPIPGTPWRRPAPEEVEE 216


>gi|256545363|ref|ZP_05472726.1| radical SAM domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|256398924|gb|EEU12538.1| radical SAM domain protein [Anaerococcus vaginalis ATCC 51170]
          Length = 461

 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 77/224 (34%), Gaps = 27/224 (12%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
            +     +C++    C+L+C +C+       R    E I          + D      I+
Sbjct: 91  RKTYLKAMCLNVSHTCNLSCEYCFAKEG---RYHGPEAI----------MTDEVAKRSID 137

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFV-- 225
            ++  S      +I   G GEPL N+D VK +++ A       +      TL+T+G +  
Sbjct: 138 FLLENSGSHFNLDIDFFG-GEPLLNWDLVKNTVNYARSKEKEFN-KHFNFTLTTNGMLLD 195

Query: 226 -PNIARVGEEIG-VMLAISLHAV-SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
              I  + + +  V+L++       ++ R      + K   + ++   +        +  
Sbjct: 196 DEKIEYLNKNMKNVVLSLDGRKEKHDEFRK---THDGKGSFDKIVPKFQKLVKNRGDKEY 252

Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
                      D   D    + +  G   + +L P       +Y
Sbjct: 253 YMRGTFTANNLDFTEDIKTYLDL--GFK-RTSLEPVVGNNEEDY 293


>gi|187933302|ref|YP_001886033.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum B
           str. Eklund 17B]
 gi|187721455|gb|ACD22676.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum B
           str. Eklund 17B]
          Length = 310

 Score = 43.0 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 69/198 (34%), Gaps = 26/198 (13%)

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
           E     S  R+ +  V +  GEPL   +    +L I      +       T+ T+G+V  
Sbjct: 121 ELNKDSSQFRRSNGGVTLSGGEPLLQHEF---ALEILKGCKSIGI---HTTIETTGYVDK 174

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
                    V L +      N+    +  +     +  +++  +    L  +  I     
Sbjct: 175 EILKKIAPWVDLVLLDIKTLNED-KHIKYVGASNKI--ILENAKSISELVTSTIIRVP-- 229

Query: 288 MLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYLC-------------SDQK 332
           ++   N   +   ++ K  K +    +I+L+P++     +Y C               ++
Sbjct: 230 VIPQFNCDEKSIQDIAKFTKSLNNITEIHLLPYHKLGLNKYDCLGKEYLMKNDINTPSEE 289

Query: 333 DIVTFSECIKRSGYSSPI 350
            ++ F + ++  G +  I
Sbjct: 290 VMLNFKKIVEDIGLTCNI 307


>gi|262283214|ref|ZP_06060981.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp.
           2_1_36FAA]
 gi|262261466|gb|EEY80165.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp.
           2_1_36FAA]
          Length = 269

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 35/214 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E+                    E +           I
Sbjct: 41  GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDVLQEALRYKGFWGNKGGI 87

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237
            + G GE L   D +       + +  L       TL T           + +  + + V
Sbjct: 88  TVSG-GEALLQIDFLIAF---FTKAKELGI---HCTLDTCALPFRNTPRYLKKFDKLMAV 140

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              + + +  ++ +   I+     K      I AC  Y      + +   +V++ G+ D 
Sbjct: 141 TDLVLLDIKEINEEQHRIVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 194

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             D + L K +K +    K  ++P++     ++ 
Sbjct: 195 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 228


>gi|313896110|ref|ZP_07829664.1| six-Cys-in-45 modification radical SAM protein [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975535|gb|EFR40996.1| six-Cys-in-45 modification radical SAM protein [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 468

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 67/192 (34%), Gaps = 20/192 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           +LC+     C+L C +C+        +             R+++    G   ++ ++   
Sbjct: 94  SLCLMVAQDCNLRCKYCFGDGGSYGGH-------------RAIMSPEVGRAAVDFIINGC 140

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
             RK   I   G GEPL N   VK+           S  + ++TL+T+G + +   +   
Sbjct: 141 GPRKHCEIDFFG-GEPLMNLRTVKEVTEYVRKREQESGKEFKLTLTTNGMLLSDKNIAWL 199

Query: 235 IGVMLAISLHAVSNDLR----NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
               +++ L +  +  R    ++      +   ++++   R                  +
Sbjct: 200 NDNNISVVLSS--DGRREVHDSMRPDSAGQGTYDIVMRNFRKLVEARGGNDYYLRGTYTR 257

Query: 291 GINDSPRDALNL 302
              D  +D L L
Sbjct: 258 ENLDFTKDVLAL 269


>gi|167759297|ref|ZP_02431424.1| hypothetical protein CLOSCI_01644 [Clostridium scindens ATCC 35704]
 gi|167663171|gb|EDS07301.1| hypothetical protein CLOSCI_01644 [Clostridium scindens ATCC 35704]
          Length = 302

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 15/82 (18%)

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKI---NLIPFNPWPGCEYLC--------- 328
           RI      +K +N +  D   +IK L+    ++   NL+P++     +Y           
Sbjct: 215 RIYIRIPTIKEVNGTDEDMKAMIKYLQEKNIRVANINLLPYHNTGSGKYEKIGRTYDGTE 274

Query: 329 ---SDQKDIVTFSECIKRSGYS 347
               +++++  F +  K SG+ 
Sbjct: 275 LHAPEKEEMEHFVDLFKESGFH 296


>gi|154149425|ref|YP_001406820.1| radical SAM domain-containing protein [Campylobacter hominis ATCC
           BAA-381]
 gi|153805434|gb|ABS52441.1| radical SAM domain protein [Campylobacter hominis ATCC BAA-381]
          Length = 300

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 34/230 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLT----AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           C+  C +C    ++ +  ++     +EIL ++   +  L +F G E              
Sbjct: 30  CNFNCLYCELSKKRAISEMSEIAPVDEILNEI---KKGLKEFNGVEV------------- 73

Query: 180 SNIVMMGMGEP-LCNFDNVKKSLSIASDSMGLSFSKRRITLS-TSGFVPNIARVGEEIGV 237
             + +   GEP L  +        + +    L+ S + + LS  S    N   + +   V
Sbjct: 74  --LTITANGEPTLYPY-----FSELINSIKKLNISPKLLILSNASKIAENFDDLLKFDIV 126

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
               SL A   ++   +    +K  +  +I+    +        +  E +++  INDS  
Sbjct: 127 K--FSLDAACEEIFKKI-DNPKKVQISKIIENIIKFRQKFTGMLV-IEILVVSDINDSED 182

Query: 298 DALNLIKILKGIPA-KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346
           +  NL K L+ I A ++++   +  P  +      + +   +E +K+   
Sbjct: 183 EFKNLAKALRDIKANRVDIGTIDRPPAFDCKAVSLERLNELAEILKKENI 232


>gi|225028851|ref|ZP_03718043.1| hypothetical protein EUBHAL_03138 [Eubacterium hallii DSM 3353]
 gi|224953825|gb|EEG35034.1| hypothetical protein EUBHAL_03138 [Eubacterium hallii DSM 3353]
          Length = 250

 Score = 43.0 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 77/240 (32%), Gaps = 46/240 (19%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C FC+        N    ++  +       +         + +      +    I
Sbjct: 34  GCPLRCQFCH--------NPDTWKMTEE----NGAIWKNAEELLNQALRYRPYWKNGGGI 81

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237
            + G GEPL   D + +    A    G+        + T+G       P  ++  E +  
Sbjct: 82  TVSG-GEPLLQIDFMLEFFKKA-KEKGI-----HTVIDTAGGPFTRKEPFFSKFQELMKY 134

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              L + +  +  +   +L   +     E ++D  R+   +     I   +V++   +D 
Sbjct: 135 TDLLLVDIKHIDTECHKVLTGHSN----ENILDMIRYLSDIKK--PIWIRHVLVPERSDK 188

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSECI 341
                 L   +  +    K+ ++P++          G EY         ++ +    + +
Sbjct: 189 DEYLTRLADFIHSLDNVEKVEILPYHTMGIYKWKELGLEYPLEGIQPPTKERVKNAKKIL 248


>gi|206895616|ref|YP_002247217.1| Fe-S oxidoreductase [Coprothermobacter proteolyticus DSM 5265]
 gi|206738233|gb|ACI17311.1| Fe-S oxidoreductase [Coprothermobacter proteolyticus DSM 5265]
          Length = 388

 Score = 43.0 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 30/224 (13%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCE 165
           + P++SRG   V  + GC+  C++C +  +   VR+    EIL ++ L            
Sbjct: 112 FYPDRSRGF--VKVEEGCNWRCTYCVSSLERGEVRSRPLGEILQEIRLMSE--------- 160

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
                 I  V    +N+++   GE   N+ ++ + +S  +          R+ LS+    
Sbjct: 161 ----RGISEVVLTGTNLMLWREGE--KNYLDLIECVSKVAAEY-----NMRVRLSSVYPE 209

Query: 226 PNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
              AR+ E   V  LA  LH       + ++    + PL  L         L +    T 
Sbjct: 210 MINARMIELFCVYPLARHLHISLQSASDKVLKSMNRAPLGDLTQMLLQLRNLDSGFAFTA 269

Query: 285 EYVM---LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           + ++    + + DS      L  +     +K+++ PF+  PG  
Sbjct: 270 DIIVGYPTETVQDSLMTMSFLSDL---RFSKVHVFPFSVRPGTP 310


>gi|332362280|gb|EGJ40080.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK1056]
          Length = 269

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 35/214 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E+                    E +           I
Sbjct: 41  GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDVLQEALRYKGFWGNKGGI 87

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237
            + G GE L   D +       + +  L       TL T           + +  + + V
Sbjct: 88  TVSG-GEALLQIDFLIAF---FTKAKELGI---HCTLDTCALPFRNTPRYLKKFDKLMAV 140

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              + + +  ++ +   I+     K      I AC  Y      + +   +V++ G+ D 
Sbjct: 141 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 194

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             D + L K +K +    K  ++P++     ++ 
Sbjct: 195 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 228


>gi|323351046|ref|ZP_08086703.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
           VMC66]
 gi|322122770|gb|EFX94479.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
           VMC66]
 gi|324991334|gb|EGC23267.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK353]
 gi|325687086|gb|EGD29109.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK72]
 gi|327462052|gb|EGF08381.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK1057]
 gi|327474565|gb|EGF19970.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK408]
 gi|328946888|gb|EGG41025.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK1087]
          Length = 269

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 35/214 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E+                    E +           I
Sbjct: 41  GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDVLQEALRYKGFWGNKGGI 87

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237
            + G GE L   D +       + +  L       TL T           + +  + + V
Sbjct: 88  TVSG-GEALLQIDFLIAF---FTKAKELGI---HCTLDTCALPFRNTPRYLKKFDKLMAV 140

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              + + +  ++ +   I+     K      I AC  Y      + +   +V++ G+ D 
Sbjct: 141 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 194

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             D + L K +K +    K  ++P++     ++ 
Sbjct: 195 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 228


>gi|4106382|gb|AAD02826.1| pyruvate formate-lyase 1 activating enzyme [Pasteurella multocida]
          Length = 246

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 15/91 (16%)

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL-- 327
            Y    N   +   YV++ G  D+  D   L   +K +    K+ L+P++     ++   
Sbjct: 155 QYLAKRNQ-PVWIRYVVVPGYTDADEDIHLLGHFIKDMKNIEKVELLPYHRLGAHKWEAM 213

Query: 328 ----------CSDQKDIVTFSECIKRSGYSS 348
                        ++ +      ++  G+  
Sbjct: 214 GEKYELEEVNPPTKESLEHIKSILESYGHIV 244


>gi|239813579|ref|YP_002942489.1| radical SAM protein [Variovorax paradoxus S110]
 gi|239800156|gb|ACS17223.1| Radical SAM domain protein [Variovorax paradoxus S110]
          Length = 360

 Score = 43.0 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 16/133 (12%)

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            L + L  V+ ++R  ++P     P+   + A      +    +++  Y++  G+ D+  
Sbjct: 220 TLGMHLEVVTPEVRERIMPGKASVPVSRYMSAFEAAVRVFGRGQVS-TYIL-AGLGDTRE 277

Query: 298 DA----LNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPI 350
                   L  + +G+   +  +PF P  G           + + +    +     ++ +
Sbjct: 278 AILDTCDQL--LARGVYPFV--VPFVPISGTPLEDHPAPSPEFMKSLLAPLGERVVAAGL 333

Query: 351 RTPRGLDILAACG 363
           R+    DI A CG
Sbjct: 334 RS---ADIKAGCG 343


>gi|254417247|ref|ZP_05030991.1| pyruvate formate-lyase 1-activating enzyme [Microcoleus
           chthonoplastes PCC 7420]
 gi|196175900|gb|EDX70920.1| pyruvate formate-lyase 1-activating enzyme [Microcoleus
           chthonoplastes PCC 7420]
          Length = 257

 Score = 43.0 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 77/243 (31%), Gaps = 46/243 (18%)

Query: 123 GCSLTCSFCYTGTQKLVR---NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC L C +C+    + +R    +T +E++ Q+   RS +    G   I G          
Sbjct: 43  GCPLRCLYCHNPDSRCIREGQEVTVDELMTQIPKYRSYMRFSGGGVTITG---------- 92

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
                   GEPL   + V++         G+        L TSG+V           V L
Sbjct: 93  --------GEPLMQPEFVREIFRR-CQDQGI-----HTALDTSGYVNLDVAKPVLDHVDL 138

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            +      +     +        LE  +   ++   +         +V++  ++D+    
Sbjct: 139 VLLDIKSFDP---KIYFKITNVSLEPTLAFAQYLSEIKK--PTWIRFVLVPNLSDNLESI 193

Query: 300 LNLIKILKGIPAKIN--LIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSG 345
             L + +  +    N  ++PF+     ++                 + +    E  +R G
Sbjct: 194 EGLAQFVSSLGNVENVEILPFHKMGEYKWQQLGYDYQLKDTPSPTPQQVQQVMEIFQRQG 253

Query: 346 YSS 348
              
Sbjct: 254 LHV 256


>gi|325693826|gb|EGD35745.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK150]
          Length = 267

 Score = 43.0 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 79/267 (29%), Gaps = 81/267 (30%)

Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           GC L C +C                    + T    R  + EEI+ +VL  R    +  G
Sbjct: 39  GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
              + G  I +                        K++  A+   G+        + T+ 
Sbjct: 97  GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132

Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           FV +  +  + I     +   L       H     ++N L+  N  Y             
Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY------- 326
             ++ + I     ++   NDS  DA     +   +    + L+PF+ +   +Y       
Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAEQFATLFNELSINQVQLLPFHQFGENKYKLLGRKY 238

Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348
                     +D+  + +   +   + 
Sbjct: 239 AMEDVKALHPEDLFEYQDVFLKHDINC 265


>gi|126697219|ref|YP_001092105.1| putative organic radical activating protein [Prochlorococcus
           marinus str. MIT 9301]
 gi|126544262|gb|ABO18504.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. MIT 9301]
          Length = 223

 Score = 43.0 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 27/107 (25%)

Query: 122 VGCSLTCSFCYTG---TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
            GC + CS+C T     +K   +++ E+I+ ++ +AR     F                 
Sbjct: 31  AGCKVGCSWCDTKNSWDEKKYPSISIEKIIDRIKIAREKGASF----------------- 73

Query: 179 ISNIVMMGMGEPL-CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
               V+ G GEPL  N DN  K++   +  MG      +I + TSG 
Sbjct: 74  ---CVITG-GEPLQHNLDNFCKAIKKMT--MGEELKPMKIHIETSGV 114


>gi|153954374|ref|YP_001395139.1| NifB2 [Clostridium kluyveri DSM 555]
 gi|146347255|gb|EDK33791.1| NifB2 [Clostridium kluyveri DSM 555]
          Length = 448

 Score = 43.0 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 35/220 (15%)

Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           C+++C++C          R     EIL             P     +  V+ S  + ++ 
Sbjct: 50  CNISCNYCSRKYDCANESRPGVTSEILS------------PEEALEKFKVVKSNMKSLTV 97

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI-TLSTSGFVPNIA--RVGEEIGVM 238
           + + G G+ L NF  V+KSL++  +      S   I  LST+G +  +    + +     
Sbjct: 98  VGIAGPGDALANFQEVRKSLTLIREE-----SPETIFCLSTNGLMLPLYANELIKLGVSH 152

Query: 239 LAISLHAVSNDLRNILVP----INRKYPLEMLIDACRHYPGL------SNARRITFEYVM 288
           + ++++AV   +   +      +  KY  E   +              S+        VM
Sbjct: 153 VTVTINAVDKKIGAKIYKEVNYLGHKYVGEEGAEILLDNQLKGLSYLCSSGVVCKVNIVM 212

Query: 289 LKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327
           LKGIND  +    ++K +K   A + N++   P PG  + 
Sbjct: 213 LKGIND--KHIKEVVKRVKECGAYMTNIMQMIPVPGSRFE 250


>gi|194336995|ref|YP_002018789.1| nitrogenase cofactor biosynthesis protein NifB [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309472|gb|ACF44172.1| nitrogenase cofactor biosynthesis protein NifB [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 423

 Score = 43.0 bits (100), Expect = 0.090,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 59/162 (36%), Gaps = 25/162 (15%)

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239
           + + G G+P  N D   ++L +          +  + ++T+G    P I  + E     +
Sbjct: 78  VGIAGPGDPFANPDETMETLRLVRAKY----PEMLLCMATNGLDLAPYIDELAELQVSHV 133

Query: 240 AISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEYV 287
            I+++A+   + + +    R               ++  ++A +     +         +
Sbjct: 134 TITINAIDPVIGSEIYAWVRHNKKMYRDLDAAKLLIDKQLEALKKL--KAAGITAKVNSI 191

Query: 288 MLKGINDS--PRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
           ++ GIND+     A  + ++   I    N +P+       + 
Sbjct: 192 IIPGINDNHVIEVARKVAELGADIL---NCMPYYSTTETVFE 230


>gi|327311467|ref|YP_004338364.1| putative molybdenum cofactor biosynthesis protein A [Thermoproteus
           uzoniensis 768-20]
 gi|326947946|gb|AEA13052.1| putative molybdenum cofactor biosynthesis protein A [Thermoproteus
           uzoniensis 768-20]
          Length = 341

 Score = 43.0 bits (100), Expect = 0.091,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 33/217 (15%)

Query: 106 VYIPEKSRGTLCVSSQVG--CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           V +    R  L +   V   C+ +C FC+                 Q+      +G    
Sbjct: 28  VLVDRYGRPFLKLRVAVNDVCNFSCIFCHFE--------------GQL----RGVGRLLN 69

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
            +D   +V       + +  + G GEPL   D V   +   +           I+++T+G
Sbjct: 70  ADDYGFLVDVLSKVGVRDYKLTG-GEPLLRSDIV-DIVRKMNRD------GVEISMTTNG 121

Query: 224 FVPNIARVGEEIG--VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           F                + +S+H    +  + +  + +++    ++D       +    +
Sbjct: 122 FRLAELAEDLAAAGLRRVNVSVHTTDPEKFSKVAGVPKEW-FRRVLDGVH--AAVKAGMK 178

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           +    V+LKGIND      +L+K+   I A I LI  
Sbjct: 179 VKLNAVLLKGINDDRESLRSLVKLAASIGASIQLIEL 215


>gi|324993692|gb|EGC25611.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK405]
 gi|324994995|gb|EGC26908.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK678]
 gi|327462962|gb|EGF09283.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK1]
          Length = 269

 Score = 43.0 bits (100), Expect = 0.091,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 35/214 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E+                    E +           I
Sbjct: 41  GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDVLQEALRYKGFWGNKGGI 87

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237
            + G GE L   D +       + +  L       TL T           + +  + + V
Sbjct: 88  TVSG-GEALLQIDFLIAF---FTKAKELGI---HCTLDTCALPFRNTPRYLKKFDKLMAV 140

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              + + +  ++ +   I+     K      I AC  Y      + +   +V++ G+ D 
Sbjct: 141 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 194

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             D + L K +K +    K  ++P++     ++ 
Sbjct: 195 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 228


>gi|328472254|gb|EGF43124.1| lysine 2,3-aminomutase [Vibrio parahaemolyticus 10329]
          Length = 340

 Score = 43.0 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 66/221 (29%), Gaps = 46/221 (20%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
                    I  +    K+R  + V    GC++ C +C        R+   +E       
Sbjct: 92  DPLDEQDNAIPGLLHKYKNRVLMIVKG--GCAVNCRYC------FRRHFPYQE------- 136

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                 +  G +     +     +   N V+   G+PL   D     +    +       
Sbjct: 137 ------NKSGKQAWSQCIEYMAEKPELNEVIFSGGDPLMAKD---DEIHWLLE------- 180

Query: 214 KRRITLSTSGFVPNIARVGEE------IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
                      +P+I R+         I   +   L  +    R  ++ +        + 
Sbjct: 181 -------HIAQIPHIKRLRIHSRLPVVIPARITDELCQLLKASRLQIILVTHINHANEIN 233

Query: 268 DACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKIL 306
           D  R          +T   + V+LKG+NDS    + L + L
Sbjct: 234 DELRQAMKKLKEANVTLLNQGVLLKGVNDSVDALIQLSEAL 274


>gi|157151404|ref|YP_001450926.1| pyruvate formate-lyase-activating enzyme [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157076198|gb|ABV10881.1| pyruvate formate-lyase-activating enzyme [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 269

 Score = 43.0 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 35/214 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E+                    E +           I
Sbjct: 41  GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDVLQEALRYKGFWGNKGGI 87

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237
            + G GE L   D +       + +  L       TL T           + +  + + V
Sbjct: 88  TVSG-GEALLQIDFLIAF---FTKAKELGI---HCTLDTCALPFRNTPRYLKKFDKLMAV 140

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              + + +  ++ +   I+     K      I AC  Y      + +   +V++ G+ D 
Sbjct: 141 TDLVLLDIKEINEEQHRIVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 194

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             D + L K +K +    K  ++P++     ++ 
Sbjct: 195 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 228


>gi|193214740|ref|YP_001995939.1| nitrogenase cofactor biosynthesis protein NifB [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088217|gb|ACF13492.1| nitrogenase cofactor biosynthesis protein NifB [Chloroherpeton
           thalassium ATCC 35110]
          Length = 423

 Score = 43.0 bits (100), Expect = 0.093,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 23/161 (14%)

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239
           + + G G+P  N D   K+L +  +       +  + ++T+G   +P I  + E     +
Sbjct: 78  VGIAGPGDPFANPDETMKTLRLVREKY----PEMLLCVATNGLNVLPYIDELAELQVSHV 133

Query: 240 AISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEYV 287
            I+++AVS  +   +    R               LE  + A +         ++    +
Sbjct: 134 TITINAVSPKVGAEVYAWVRHQKRVLRDEQAAETLLENQLAALKKLKEKGITAKVNT--I 191

Query: 288 MLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327
           ++ GIND     L + K +  + A I N +P+    G  + 
Sbjct: 192 IIPGINDH--HVLEVAKTVSELGADILNTLPYYQNEGTVFE 230


>gi|160915923|ref|ZP_02078131.1| hypothetical protein EUBDOL_01946 [Eubacterium dolichum DSM 3991]
 gi|158432399|gb|EDP10688.1| hypothetical protein EUBDOL_01946 [Eubacterium dolichum DSM 3991]
          Length = 249

 Score = 43.0 bits (100), Expect = 0.093,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 82/243 (33%), Gaps = 56/243 (23%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T   +   N+T++E+L + L  RS      G                
Sbjct: 29  GCQMRCKYCHNVDTWQMQEA-NMTSDELLKKALRYRSYWKQGGG---------------- 71

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234
             I + G GEPL   D V +    A              L TSG       P   ++ + 
Sbjct: 72  --ITVSG-GEPLLQIDFVLELFEKAKAK------GVHTVLDTSGNPFTIEQPFFDKLQKL 122

Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           + V   + + +  +       L   +       ++   R+   +   + +   +V++ GI
Sbjct: 123 LAVTDLILLDIKHIDALAHKELTGQDNAN----ILAFARYLSEI--QKPVWIRHVLVPGI 176

Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFS 338
           ND       L   +K +    ++ ++P++     ++                ++ +    
Sbjct: 177 NDDEAQLKRLSVFIKELSNVERVEVLPYHSLGEFKWEKLGIPYTLKGIQAPSKESVEKAK 236

Query: 339 ECI 341
           E +
Sbjct: 237 EIL 239


>gi|332799081|ref|YP_004460580.1| Radical SAM domain-containing protein [Tepidanaerobacter sp. Re1]
 gi|332696816|gb|AEE91273.1| Radical SAM domain protein [Tepidanaerobacter sp. Re1]
          Length = 454

 Score = 42.6 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 70/197 (35%), Gaps = 22/197 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+                      R L+    G + ++ +V  S
Sbjct: 98  ALCLNVAHDCNLRCKYCFASKGDYHG-------------KRELMSIEVGKKAVDFLVEKS 144

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231
              K   I   G GEPL   + +K+ +S A     L   K   T++T+  +     +  +
Sbjct: 145 GDMKNLEIDFFG-GEPLMAMNTIKEVISYAKSIEKLCHKKFHFTITTNALLLNDEVMQYL 203

Query: 232 GEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVM 288
            E +  ++L++      ND   +    +  Y  + ++   +    L    +         
Sbjct: 204 HEHMDNIVLSLDGRKEVNDFIRVRADGSGTY--DEIVSNIKKIVELRKRDKKEYYVRGTF 261

Query: 289 LKGINDSPRDALNLIKI 305
            K   +  +D  ++  +
Sbjct: 262 TKYNLNFAQDVFHMADL 278


>gi|20094020|ref|NP_613867.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
 gi|19886991|gb|AAM01797.1| Predicted Fe-S oxidoreductase [Methanopyrus kandleri AV19]
          Length = 282

 Score = 42.6 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 96/261 (36%), Gaps = 38/261 (14%)

Query: 111 KSRGTLCVSSQVG--CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           +    + V   VG  C++ C FC +G +         E +      R++           
Sbjct: 15  EHGKFVKVHLPVGGRCNIHCRFCESGLE--------HEGVRVDYPGRAVRTITGDEARTA 66

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-VPN 227
              +     ++  + + G G+PL N+++VK++  + ++++     + +  LST+G  +P+
Sbjct: 67  LKRVKEHCGRVDVVGIAGPGDPLANWEDVKETFDVVAETV----PEAKRCLSTNGVWLPD 122

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILV-------------PINRKYPLEMLIDACRHYP 274
           +     E+   + I+++A+  ++   +                  ++ +    +      
Sbjct: 123 LIDEVTELVHSVTITVNALDPEIAADIYDRALTPEGEVLTGKEAARW-IVERQEGAMDAL 181

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGC---EYLCSD 330
                      +V++ G+N    +   + +         +N+IP    PG    ++    
Sbjct: 182 KKERYILKKVNFVLVPGVN--EDEVERVAERAADAGFHAMNVIPL--IPGGDMKDHRPPT 237

Query: 331 QKDIVTFSECIKRSGYSSPIR 351
            +++    +  ++   +   R
Sbjct: 238 CRELSRARDRAEKY-ITVMRR 257


>gi|219854965|ref|YP_002472087.1| hypothetical protein CKR_1622 [Clostridium kluyveri NBRC 12016]
 gi|219568689|dbj|BAH06673.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 451

 Score = 42.6 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 35/220 (15%)

Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           C+++C++C          R     EIL             P     +  V+ S  + ++ 
Sbjct: 53  CNISCNYCSRKYDCANESRPGVTSEILS------------PEEALEKFKVVKSNMKSLTV 100

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI-TLSTSGFVPNIA--RVGEEIGVM 238
           + + G G+ L NF  V+KSL++  +      S   I  LST+G +  +    + +     
Sbjct: 101 VGIAGPGDALANFQEVRKSLTLIREE-----SPETIFCLSTNGLMLPLYANELIKLGVSH 155

Query: 239 LAISLHAVSNDLRNILVP----INRKYPLEMLIDACRHYPGL------SNARRITFEYVM 288
           + ++++AV   +   +      +  KY  E   +              S+        VM
Sbjct: 156 VTVTINAVDKKIGAKIYKEVNYLGHKYVGEEGAEILLDNQLKGLSYLCSSGVVCKVNIVM 215

Query: 289 LKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327
           LKGIND  +    ++K +K   A + N++   P PG  + 
Sbjct: 216 LKGIND--KHIKEVVKRVKECGAYMTNIMQMIPVPGSRFE 253


>gi|325696320|gb|EGD38211.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK160]
          Length = 269

 Score = 42.6 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 35/214 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E+                    E +           I
Sbjct: 41  GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDVLQEALRYKGFWGNKGGI 87

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237
            + G GE L   D +       + +  L       TL T           + +  + + V
Sbjct: 88  TVSG-GEALLQIDFLIAF---FTKAKELGI---HCTLDTCALPFRNTPRYLKKFDKLMAV 140

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              + + +  ++ +   I+     K      I AC  Y      + +   +V++ G+ D 
Sbjct: 141 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACAKYLSY-IGKPVWIRHVLVPGLTDR 194

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             D + L K +K +    K  ++P++     ++ 
Sbjct: 195 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 228


>gi|296158481|ref|ZP_06841312.1| Radical SAM domain protein [Burkholderia sp. Ch1-1]
 gi|295891425|gb|EFG71212.1| Radical SAM domain protein [Burkholderia sp. Ch1-1]
          Length = 370

 Score = 42.6 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 8/129 (6%)

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            L + L  V+ +LR  ++P     PL   ++A +    +    +++  YV+  G+ DS  
Sbjct: 234 TLGMHLEVVTPELRERIMPGKASVPLSRYMEAFKSAVAVFGRGQVS-TYVL-AGLGDSAE 291

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPIRTPR 354
             L + + L  +     ++PF P  G           + + +  + +     ++ +R+  
Sbjct: 292 AILAMSRELIDLGVYPFVVPFVPISGTPLEDHPAPTPEFMKSVLQPLGGMLNAAAMRSS- 350

Query: 355 GLDILAACG 363
             DI A CG
Sbjct: 351 --DIKAGCG 357


>gi|224367738|ref|YP_002601901.1| hypothetical protein HRM2_06230 [Desulfobacterium autotrophicum
           HRM2]
 gi|223690454|gb|ACN13737.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 471

 Score = 42.6 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 59/233 (25%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+ +C +C +  +                         PG  ++E     +    +S   
Sbjct: 87  CNASCFYCPSAQK---------------------HRSIPGTGNLEFNAPEAYADYVSAFD 125

Query: 184 MMGM----GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARVGEEIG 236
           + G+    GEP  +FD V + L       G S     I + T+G +     +  + +E  
Sbjct: 126 IKGVSFSGGEPTLSFDRVVRFLKTLRHRSGNSL---YIWMYTNGILITEDKLKILRDEG- 181

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
                      +++R  +     +Y LE +  A    P      R+T E   +  +   P
Sbjct: 182 ----------LDEIRFDI--GAVRYNLEKVRMAVGIIP------RVTVE---IPAV---P 217

Query: 297 RDALNLIKILKGIPAK-INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348
            D   L ++++ + A  +N +  +      +    +K I      +   G + 
Sbjct: 218 EDVETLKRVVRDLDAMGVNFLNLHQLRCTGFNR--EKFIQRNYTFVHGPGVAV 268


>gi|182417460|ref|ZP_02948787.1| NifN-B [Clostridium butyricum 5521]
 gi|237665591|ref|ZP_04525579.1| nitrogenase cofactor biosynthesis protein NifB [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378629|gb|EDT76156.1| NifN-B [Clostridium butyricum 5521]
 gi|237658538|gb|EEP56090.1| nitrogenase cofactor biosynthesis protein NifB [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 888

 Score = 42.6 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 40/215 (18%)

Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           C+++C++C+         R     E+L             P     +   + S    +  
Sbjct: 509 CNVSCNYCHRKYDCVNESRPGVTTEVLS------------PEQAFEKYKYVKSKMPNLKV 556

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA--RVGEEIGVML 239
           I + G G+ L NFDNVK++L +  +       +    LST+G +       + +     +
Sbjct: 557 IGIAGPGDALANFDNVKETLKLIRNDD----PEITFCLSTNGLMLPFYAQELIDLGVSHV 612

Query: 240 AISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            I+++AV+ ++   +                 +  L   +   ++        ++    V
Sbjct: 613 TITINAVNPEISAKVYKYVDYLGVIYRGEEAAQILLNNQLSGLKYLTDRGIVVKVNI--V 670

Query: 288 MLKGINDSPRDALNLIKILKGIPAKI-N---LIPF 318
           MLKGIND      ++ K +K   A I N   +IP 
Sbjct: 671 MLKGIND--EHIYDITKKVKDFGATITNIMQMIPV 703


>gi|325265158|ref|ZP_08131884.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
           D5]
 gi|324029562|gb|EGB90851.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
           D5]
          Length = 302

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 15/85 (17%)

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFN------------PW 321
            +  RI      +K +N +      +I+ L+        +NL+P++             +
Sbjct: 211 RDGARIYIRIPTIKEVNGNEDAMKAMIRYLQEKNIHAAGVNLLPYHNTGSGKYTKIGKCY 270

Query: 322 PGCEYLCSDQKDIVTFSECIKRSGY 346
            G      D++++  F E  + +G+
Sbjct: 271 EGTGLHAPDKEEMNHFVEMFREAGF 295


>gi|92114198|ref|YP_574126.1| GTP cyclohydrolase subunit MoaA [Chromohalobacter salexigens DSM
           3043]
 gi|91797288|gb|ABE59427.1| GTP cyclohydrolase subunit MoaA [Chromohalobacter salexigens DSM
           3043]
          Length = 329

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 31/195 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C +C +     +          QVL            E+IE +    V   +  I 
Sbjct: 23  CDFRCVYCMSEDMTFLPR-------AQVLTL----------EEIEQVARAFVELGVEKIR 65

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGL--SFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           + G GEPL     V++ +      +G         +T + +G V +   + E     L I
Sbjct: 66  LTG-GEPL-----VRRGIDDLVGRIGALPGLKDFAMTTNGAGLVKHAKALREGGLQRLNI 119

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           S+ ++  +    L    R   LE ++   R     +   RI    VMLKG ND   + L+
Sbjct: 120 SIDSLDPERFRQL---TRTGNLEHVVAGIRA-ARDAGFERIKLNAVMLKGRND--DEVLD 173

Query: 302 LIKILKGIPAKINLI 316
           L+   +     I+ I
Sbjct: 174 LVDFARREGVDISFI 188


>gi|325264173|ref|ZP_08130905.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
           D5]
 gi|324030657|gb|EGB91940.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp.
           D5]
          Length = 317

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 54/156 (34%), Gaps = 22/156 (14%)

Query: 210 LSFSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           L        + T G+ P     +V +   ++L    H      R      NR     +++
Sbjct: 166 LKHGGIHTAIETCGYSPWNEFEKVLDYTDLVLYDVKHCDDTMHRRFTGKGNR-----LIL 220

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY 326
           +  +     +  R +     ++ G ND+ ++   +  I   I AK I+L+PF+     ++
Sbjct: 221 ENLKKVSDFN--RPVIIRIPVIPGFNDTRKNMQEVAHIAAEIGAKEIHLLPFHQIGESKW 278

Query: 327 ------------LCSDQKDIVTFSECIKRSGYSSPI 350
                           ++ +    + +  +G    +
Sbjct: 279 DSTGKTYHFRNIEEPSKESMAEIKQMLAETGVPVVV 314


>gi|322807365|emb|CBZ04939.1| transcriptional regulatory protein [Clostridium botulinum H04402
           065]
          Length = 455

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 76/200 (38%), Gaps = 33/200 (16%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+    +                 R L+    G + I+ ++  S
Sbjct: 96  ALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPGVGKKAIDFVIEKS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             RK   + + G GEPL  F  +KK +  A +         R T++T+G + N   +   
Sbjct: 143 GPRKNIEVDLFG-GEPLMAFSTIKKIVEYAKEQEKKHNKTIRFTMTTNGTLLNQEIMEYL 201

Query: 232 -GEEIGVMLAISLHAV-SNDLR---------NILVPINRKYPLEMLIDACRHYPGLSNAR 280
                 ++L+I      ++++R         + ++P  +K  +  + D  + Y       
Sbjct: 202 DKNMGNIVLSIDGRKEINDNVRVRVDGSGSYDSILPKIKK--MVEMRDKTKQYYARGTFT 259

Query: 281 RIT---FEYVMLKGINDSPR 297
           R     FE VM    ND   
Sbjct: 260 RENLDFFEDVMHMANNDFDE 279


>gi|257094383|ref|YP_003168024.1| molybdenum cofactor biosynthesis protein A [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046907|gb|ACV36095.1| molybdenum cofactor biosynthesis protein A [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 359

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 36/187 (19%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   CS+C       +          QVL     L       D+    +   G       
Sbjct: 53  CDFRCSYCMAEEMTFLPR-------AQVLTLEECLRIAGTFVDLGVTKVRVTG------- 98

Query: 184 MMGMGEPL--CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
               GEPL   N      ++ +     GLS   + + ++T+G    + R    +      
Sbjct: 99  ----GEPLVRHN------AIWLLERIAGLS-GLKELVITTNG--SQLDRFAAALRAAGVR 145

Query: 242 SLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
            ++   + LR+     I R   L  ++         +   R+    VM++G+ND      
Sbjct: 146 RINVSLDTLRSQRFREITRVGDLAKVLRGLDA-AQAAGFERLKLNTVMMRGVND-----D 199

Query: 301 NLIKILK 307
            LI +++
Sbjct: 200 ELIDLVQ 206


>gi|262165976|ref|ZP_06033713.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus VM223]
 gi|262025692|gb|EEY44360.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus VM223]
          Length = 165

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 59/151 (39%), Gaps = 25/151 (16%)

Query: 216 RITLSTSGFV----PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
              L T+G++    P I  V E    ++ + +  +++++   L+ ++ K      +D  R
Sbjct: 20  HTCLDTNGYIRKFTPVIDEVLEVTD-LVMLDIKQMNDEIHQDLIGVSNK----RTLDFAR 74

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL-- 327
           +   +   ++    YV++ G  D    A  L + +K +    KI L+P++     ++   
Sbjct: 75  YLHQI--GQKTWLRYVVVPGYTDDEASAHQLGEFIKDMENIEKIELLPYHKLGAHKWEAM 132

Query: 328 ----------CSDQKDIVTFSECIKRSGYSS 348
                        ++ +      +++   + 
Sbjct: 133 GEEYPLEGVNPPSKETMDKIVAILEQYHSNV 163


>gi|14547234|emb|CAC42520.1| NifB protein [Pseudomonas stutzeri]
          Length = 504

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 72/210 (34%), Gaps = 33/210 (15%)

Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           C++ C +C          R     E+L             P     +   + +   +++ 
Sbjct: 67  CNIQCHYCNRKYDCANESRPGVVSELLE------------PVQAVKKVKAVAATIPQMTV 114

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239
           + + G G+PL N     ++  + S+         ++ +ST+G      +  + +     +
Sbjct: 115 LGIAGPGDPLANPQRTFETFRMLSEQA----PDIKLCVSTNGLALPDCVDELAKHNIDHV 170

Query: 240 AISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPGL------SNARRITFEYVML 289
            I+++ V  D+   + P      + +P                         +    V++
Sbjct: 171 TITINCVDPDIGAEIYPWIYLEQQAHPWAQGAKILIERQQKGLEMLVERGILVKVNSVLI 230

Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPF 318
            G+ND       + +I+K   A + N++P 
Sbjct: 231 PGVND--EHLKEVSRIVKAKGAFLHNVMPL 258


>gi|307718060|ref|YP_003873592.1| FeMo cofactor biosynthesis protein NifB [Spirochaeta thermophila
           DSM 6192]
 gi|306531785|gb|ADN01319.1| FeMo cofactor biosynthesis protein NifB [Spirochaeta thermophila
           DSM 6192]
          Length = 423

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 65/200 (32%), Gaps = 30/200 (15%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
           P        ++      ++ + + G G+P  N D    +L               + ++T
Sbjct: 66  PDEACEVVDLLKERFPDLTVVGIAGPGDPFANPDETLSTLRGVRSRH----PDLLLCVAT 121

Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI------------NRKYPLEMLI 267
           +G      +  + +     + ++++AV  ++   + P               +  ++   
Sbjct: 122 NGLALPEYVEELADLRVSHVTVTVNAVHPEVGERIYPWVRYERRVRGGREAARLLIDRQQ 181

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY 326
           +A       +    +    +++ G+ND+      + K      A  IN IP  P  G  +
Sbjct: 182 EAIVSL--KAKGLVVKVNTIVIPGVNDT--HVREVAKETAAWGADIINPIPLYPVEGTRF 237

Query: 327 L---CSDQKDIVTFSECIKR 343
                 D      F   ++R
Sbjct: 238 AHIGEPDP----RFMSELRR 253


>gi|315452871|ref|YP_004073141.1| putative radical SAM domain-containing protein [Helicobacter felis
           ATCC 49179]
 gi|315131923|emb|CBY82551.1| Putative radical SAM domain protein [Helicobacter felis ATCC 49179]
          Length = 304

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 66/188 (35%), Gaps = 19/188 (10%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C +C     K        + + QV+   +L       + +   +       +  + 
Sbjct: 29  CNFNCIYCELKAHK------PIDKMEQVIPLSTL------LDAVHSALQTHKNTPLDVLT 76

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA-IS 242
               GEP   + ++   ++      GL    + + LS      N+      +   +   S
Sbjct: 77  TTANGEPTL-YPHLYDFITQLKTPPGL----KTLILSNGSRFANLQVQEALMHYDIVKFS 131

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L A        +   +++  LE L++    +        I  E +++KG+NDS  +   +
Sbjct: 132 LDAALPKAFAKVDKPSKQIHLEQLLEGIADFSARYAGMLIA-EVLLVKGVNDSLENIQAI 190

Query: 303 IKILKGIP 310
           +  L+ + 
Sbjct: 191 VDFLRPLK 198


>gi|289423463|ref|ZP_06425265.1| pyruvate formate-lyase 1-activating enzyme [Peptostreptococcus
           anaerobius 653-L]
 gi|289156097|gb|EFD04760.1| pyruvate formate-lyase 1-activating enzyme [Peptostreptococcus
           anaerobius 653-L]
          Length = 243

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 36/188 (19%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC L C FC+   T    +   +T +E++ + +  ++      G   + G          
Sbjct: 28  GCPLRCRFCHNRDTWETGIGTEMTPDEVIDEYMKYKTYYETSGGGITVSG---------- 77

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM- 238
                   GE     D V +   +A  +           L TSGFV  I ++ E +    
Sbjct: 78  --------GEASLQADFVTEVFRLAKKN------GVHTCLDTSGFV-EIDKIKELLDYTD 122

Query: 239 -LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            + + L  +  + R+  +        E  +   R+    +    +   +V++ GI DS  
Sbjct: 123 LVLLDLKHMDPE-RSKWLTGASS---EKAMQLARYLDERN--IPVWLRHVLIPGITDSRE 176

Query: 298 DALNLIKI 305
           +   +   
Sbjct: 177 NLELMADF 184


>gi|157165730|ref|YP_001467188.1| radical SAM domain-containing protein [Campylobacter concisus
           13826]
 gi|112801435|gb|EAT98779.1| nitrogenase cofactor biosynthesis protein NifB [Campylobacter
           concisus 13826]
          Length = 275

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 69/219 (31%), Gaps = 47/219 (21%)

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNI 228
              + IS I + G G+P+C+ D    +           F    + LST+G      V  I
Sbjct: 74  KFRQDISVIGIAGPGDPMCDADKTLATFEKCKS----HFPNALLCLSTNGLALPEHVDEI 129

Query: 229 ARVGEEIGVMLAISLHAVS--NDLRNILVPINRKYPLEMLIDACRHYPGL------SNAR 280
            R+G    V + ++       + + + +    + Y  E                      
Sbjct: 130 VRLG-VSHVTVTVNAVTPDVGSKVYSWVRYEGKNYYGEEAARILLARQDKGIRKLKEAGM 188

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKI-N---LIPFNPWPGCEYLCSDQKDIVT 336
            +    V++ G+N       ++    K   A I N   +IP +  P         ++I  
Sbjct: 189 LVKINTVVIPGVN--IDHVQSISAKAKQWGADIMNCMAMIPVHDTPFENLKSPSTEEIHR 246

Query: 337 FSECIKRSGYSSPIRTPRGLDIL---------A-ACGQL 365
                        IR   G DI          A ACG+L
Sbjct: 247 -------------IRRSIGDDIDQMTHCSRCRADACGKL 272


>gi|206603028|gb|EDZ39508.1| Probable radical SAM family protein [Leptospirillum sp. Group II
           '5-way CG']
          Length = 311

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 10/112 (8%)

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ--VGCSLTCSFCYTGT--------QKL 138
           L R   R   G   +  V        ++ V+     GC+  C +C            + L
Sbjct: 7   LWRSHERSFQGNRYVYPVLSRRAGGISVGVNLNPDKGCNFDCVYCQVDRTPAGMEGVEPL 66

Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190
            R +    +L ++   +  +      E      +P   R++S+I   G GEP
Sbjct: 67  HRTVETGRLLDELQTLQKSIRAGDFFEKPPFEAVPVPLRRMSDIAFSGDGEP 118


>gi|218961773|ref|YP_001741548.1| putative enzyme with radical SAM domain protein (Fe-S
           oxidoreductases) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730430|emb|CAO81342.1| putative enzyme with radical SAM domain protein (Fe-S
           oxidoreductases) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 339

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 23/190 (12%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C +C           T      QV   +            E     S    +  I 
Sbjct: 53  CPLNCVYCEVQR-------TTH----QV--TKREAFFETREILAELDSFMSTNPHLDYIT 99

Query: 184 MMGMGEPLCN--FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
             G GEP  N     +   +     S  L+     I  S     P + +  E +   + +
Sbjct: 100 FSGAGEPTLNSLLGQIVNYIKAKYPSYKLALLTNGILFS----DPEVRK--EVLPCDIVL 153

Query: 242 -SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
            SL + + +    +     +  +E LI+   H+        I  E  ++ GIN  P++  
Sbjct: 154 PSLDSATQEGFEKINRPCPELKVEELIEGLIHFRQEYKGI-IWLEVFLVSGINTIPQEIS 212

Query: 301 NLIKILKGIP 310
            L K +  I 
Sbjct: 213 ALAKAINKIK 222


>gi|225028525|ref|ZP_03717717.1| hypothetical protein EUBHAL_02804 [Eubacterium hallii DSM 3353]
 gi|224954168|gb|EEG35377.1| hypothetical protein EUBHAL_02804 [Eubacterium hallii DSM 3353]
          Length = 450

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 91/239 (38%), Gaps = 33/239 (13%)

Query: 42  IYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV 101
           +  +   D    ++  +++  +L ++F+   PE     +S               I    
Sbjct: 89  LAKKNEADILVGNNKKKDIAQILEEYFAAKEPEQEVPVVS-----------EVIDINHTK 137

Query: 102 EIETVYIPEKSRGTLC-VSSQVGCSLTCSFCYTG-TQKLVRNLTAEEILLQVLLARSLLG 159
           E E + I + +  T   +  Q GC+  CS+C    T+  +R+   EE++ +V   ++L  
Sbjct: 138 EYEDLTIHKVNEHTRAYIKIQDGCNQFCSYCIIPYTRGRIRSKNPEEVIEEV---KNLAA 194

Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
                  + G+ + S G+ +  + ++           V K +    D   +        +
Sbjct: 195 QGYKEIVLTGIHLSSYGKDLGTVTLLD----------VIKRIQQVEDVERIRLGSLEPRI 244

Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA---CRHYPG 275
            T  FV  + +  +++     +SL +  ++    L  +NRKY  E   +A    R Y  
Sbjct: 245 ITEEFVKELVKC-DKVCPHFHLSLQSGCDET---LKRMNRKYTTEEYEEALNILRKYYE 299


>gi|153838020|ref|ZP_01990687.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus AQ3810]
 gi|149748628|gb|EDM59487.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus AQ3810]
          Length = 340

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 65/221 (29%), Gaps = 46/221 (20%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
                    I  +    K+R  + V    GC++ C +C        R+   +E       
Sbjct: 92  DPLDEQDNAIPGLLHKYKNRVLMIVKG--GCAVNCRYC------FRRHFPYQE------- 136

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                 +  G +     +     +   N V+   G+PL   D     +    +       
Sbjct: 137 ------NKSGKQAWSQCIEYMAEKPELNEVIFSGGDPLMAKD---DEIHWLLE------- 180

Query: 214 KRRITLSTSGFVPNIARVGEE------IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
                      +P+I R+         I   +   L  +    R  ++ +        + 
Sbjct: 181 -------HIAKIPHIKRLRIHSRLPVVIPARITDELCQLLKASRLQIILVTHINHANEIN 233

Query: 268 DACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKIL 306
           D  R          +T   + V+LKG+NDS      L + L
Sbjct: 234 DELRQAMKKLKEANVTLLNQGVLLKGVNDSVDALSQLSEAL 274


>gi|28899620|ref|NP_799225.1| hypothetical protein VP2846 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364033|ref|ZP_05776761.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus K5030]
 gi|260876639|ref|ZP_05888994.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus AN-5034]
 gi|260898079|ref|ZP_05906575.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus Peru-466]
 gi|260902332|ref|ZP_05910727.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus AQ4037]
 gi|28807872|dbj|BAC61109.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085822|gb|EFO35517.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus Peru-466]
 gi|308093973|gb|EFO43668.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus AN-5034]
 gi|308110956|gb|EFO48496.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus AQ4037]
 gi|308114570|gb|EFO52110.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus K5030]
          Length = 340

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 65/221 (29%), Gaps = 46/221 (20%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
                    I  +    K+R  + V    GC++ C +C        R+   +E       
Sbjct: 92  DPLDEQDNAIPGLLHKYKNRVLMIVKG--GCAVNCRYC------FRRHFPYQE------- 136

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                 +  G +     +     +   N V+   G+PL   D     +    +       
Sbjct: 137 ------NKSGKQAWSQCIEYMAEKPELNEVIFSGGDPLMAKD---DEIHWLLE------- 180

Query: 214 KRRITLSTSGFVPNIARVGEE------IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
                      +P+I R+         I   +   L  +    R  ++ +        + 
Sbjct: 181 -------HIAKIPHIKRLRIHSRLPVVIPARITDELCQLLKASRLQIILVTHINHANEIN 233

Query: 268 DACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKIL 306
           D  R          +T   + V+LKG+NDS      L + L
Sbjct: 234 DELRQAMKKLKEANVTLLNQGVLLKGVNDSVDALSQLSEAL 274


>gi|134291461|ref|YP_001115230.1| radical SAM domain-containing protein [Burkholderia vietnamiensis
           G4]
 gi|134134650|gb|ABO58975.1| Radical SAM domain protein [Burkholderia vietnamiensis G4]
          Length = 356

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 16/143 (11%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+       L + L AV+  +R  ++P     PL   + A R    +    +++  Y+
Sbjct: 210 FDRMKASGIDTLGMHLEAVTPAVRERIMPGKASVPLSRYMSAFRAAVAVFGRGQVS-TYI 268

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSEC 340
           +  G+ DS    L++ + L  +     ++PF P  G             +          
Sbjct: 269 L-AGLGDSEAAILDMSRELIDLGVYPFVVPFVPISGTPLESHPAPSPDFMRAVLAPLGAM 327

Query: 341 IKRSGYSSPIRTPRGLDILAACG 363
           ++ +G        R  DI A CG
Sbjct: 328 LRDAGM-------RSADIKAGCG 343


>gi|148827317|ref|YP_001292070.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           PittGG]
 gi|260582394|ref|ZP_05850186.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae
           NT127]
 gi|148718559|gb|ABQ99686.1| pyruvate formate-lyase activating enzyme [Haemophilus influenzae
           PittGG]
 gi|260094545|gb|EEW78441.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae
           NT127]
          Length = 246

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 84/248 (33%), Gaps = 54/248 (21%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              ++ E+++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDLEGGKE--ISVEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +                 ++        G++       L T+GFV +   + +E+  
Sbjct: 87  FVRD---------------WFRACK----EEGIN-----TCLDTNGFVRHYDHIIDELLD 122

Query: 238 MLAISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           +  + L  +   ++ +   L+ +  K  LE        Y    N       YV++ G  D
Sbjct: 123 VTDLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQH-TWIRYVVVPGYTD 176

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
           S  D   L + ++G+    K+ L+P++     ++                ++ +      
Sbjct: 177 SDHDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTLGLDYELEDVLPPTKESLEHIKTI 236

Query: 341 IKRSGYSS 348
           ++  G++ 
Sbjct: 237 LEGYGHTV 244


>gi|325688591|gb|EGD30608.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK72]
          Length = 267

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 72/234 (30%), Gaps = 69/234 (29%)

Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           GC L C +C                    + T    R  + EEI+ +VL  R    +  G
Sbjct: 39  GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
              + G  I +                        K++  A+   G+        + T+ 
Sbjct: 97  GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132

Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           FV +  +  + I     +   L       H     ++N L+  N  Y             
Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL 327
             ++ + I     ++   NDS  DA     +   +    + L+PF+ +   +Y 
Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAEQFATLFNELSINQVQLLPFHQFGENKYK 232


>gi|270261183|ref|ZP_06189456.1| hypothetical protein SOD_a04080 [Serratia odorifera 4Rx13]
 gi|270044667|gb|EFA17758.1| hypothetical protein SOD_a04080 [Serratia odorifera 4Rx13]
          Length = 246

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 76/245 (31%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T EE++   +  R  +    G     G        
Sbjct: 29  GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKDTVAYRHFMNASGGGVTASGGEAILQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           ++   D+ G              + P I  + +    
Sbjct: 87  FVRDWFRACQQEG----------INTCLDTNGF----------VRRYDPVIDELLDATD- 125

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++D+   LV ++    L+        Y    N  R    YV++ G +D  +
Sbjct: 126 LVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWSDDDK 179

Query: 298 DALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSECIKR 343
               L +  K +    KI L+P++          G EY            +      ++ 
Sbjct: 180 STHMLGEFTKDMTNIEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKADTMDRVKGILES 239

Query: 344 SGYSS 348
            G+  
Sbjct: 240 YGHKV 244


>gi|303234148|ref|ZP_07320794.1| radical SAM domain protein [Finegoldia magna BVS033A4]
 gi|302494689|gb|EFL54449.1| radical SAM domain protein [Finegoldia magna BVS033A4]
          Length = 423

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 23/202 (11%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
            +    +  V +   C+L CS+C        +N+   E L+       +  +     +  
Sbjct: 57  KQNKENSFVVVTNTNCNLRCSYC------YEKNICDTERLM-------IEEENNSIYEFI 103

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
              I     +I NI   G GEPL N   + + ++  + ++     K  +  +        
Sbjct: 104 YRNIKKSDARIFNIEFTG-GEPLLNKKYIFRLVNKINRNLKEKIIKYSLVTNGILLEKED 162

Query: 229 ARVGEEIGVMLAISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
            +   +    + I+L       N  R  L   N     +++I   + Y   S   +IT  
Sbjct: 163 IKFFNDNKFNIQITLDGSKKFHNQERIGLDITN---SFDIIIKNIKEYLNNSELLKITIR 219

Query: 286 YVMLKGINDSPRDALNLIKILK 307
              +   N +      LI  LK
Sbjct: 220 ---VNVSNKNKESIFELIDFLK 238


>gi|153953661|ref|YP_001394426.1| NifB1 [Clostridium kluyveri DSM 555]
 gi|219854283|ref|YP_002471405.1| hypothetical protein CKR_0940 [Clostridium kluyveri NBRC 12016]
 gi|146346542|gb|EDK33078.1| NifB1 [Clostridium kluyveri DSM 555]
 gi|219568007|dbj|BAH05991.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 423

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 45/225 (20%)

Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           C+++C+FC          R     E+L             P     +  ++    + ++ 
Sbjct: 37  CNVSCNFCNRKYDCVNETRPGVTSEVL------------TPEKARDKFNIVKDKVKNLTV 84

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITLSTSGFV-----PNIARVGEEI 235
           + + G G+PL NF+  KKS+ +         S      LST+G +       I R+G   
Sbjct: 85  VGIAGPGDPLANFEETKKSIELIKKE-----SPNITFCLSTNGLMLPFYADEIIRLG-VT 138

Query: 236 GVMLAISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRIT 283
            V +   ++AV   +   +                    L   +   R+        ++ 
Sbjct: 139 HVTIT--INAVDPKIGAKIYKFVNYLGSVLEGEEAGNVLLNNQLSGLRYIAQKGIICKVN 196

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327
              VM+KGIN S      ++K +K   A + N++P  P  G  + 
Sbjct: 197 I--VMIKGINSS--HIPEVVKKVKECGAYMTNIMPLIPVKGSVFE 237


>gi|86743153|ref|YP_483553.1| nitrogenase cofactor biosynthesis protein NifB [Frankia sp. CcI3]
 gi|86570015|gb|ABD13824.1| nitrogenase cofactor biosynthesis protein NifB [Frankia sp. CcI3]
          Length = 527

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 86/246 (34%), Gaps = 36/246 (14%)

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           V+   GC++ C++C        R         +     +     P     +  ++ S  +
Sbjct: 74  VAVAPGCNIQCNYC-------NRKFDCA---NESRPGVTSTLLSPEDALAKVKLVASEIK 123

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEI 235
           ++S + + G G+PL N     +++ + +          ++ LST+G     ++ R+ E  
Sbjct: 124 QMSVLGIAGPGDPLANPKPTFRTMELVARD----CPDIKLCLSTNGLTLPDHVDRIAELN 179

Query: 236 GVMLAISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPGL------SNARRITFE 285
              + I+++ +  ++   + P      ++Y                              
Sbjct: 180 VDHVTITINMIDPEVGERIYPWIAFRGKRYTGREASRILSERQLEGLAMLTERKILCKVN 239

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPG-------CEYLCSDQKDIVTF 337
            VM+ GIND     + + + +K + A + N++P    P                +++   
Sbjct: 240 SVMIPGIND--DHLVEVSRKVKELGAFLHNVMPLVSAPEHGTHFGLTGQRGPTPQELKAL 297

Query: 338 SECIKR 343
            +  ++
Sbjct: 298 QDRCEQ 303


>gi|220929033|ref|YP_002505942.1| radical SAM protein [Clostridium cellulolyticum H10]
 gi|219999361|gb|ACL75962.1| Radical SAM domain protein [Clostridium cellulolyticum H10]
          Length = 269

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 26/162 (16%)

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIG 236
           I + G G+PL N D++  +L I S+    ++   +  + T+GF        I   G +  
Sbjct: 73  IGIAGPGDPLANPDDIFSALEIVSE----NYPDFKKCICTNGFGVEDCADKIKEAGIDY- 127

Query: 237 VMLAISLHAVSNDLRNILVPI-----------NRKYPLEMLIDACRHYPGLSNARRITFE 285
             + +++++++ +  + +              +    +  L  +           +I   
Sbjct: 128 --ITLTINSINVNTLSKIYKYIYYRDEYYEGESAAQLILRLQKSALDILSSIKGLKIKIN 185

Query: 286 YVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY 326
            V + GIND   D   LI+ L       IN+IP     G E+
Sbjct: 186 IVFIPGINDKEID--ELIQFLCKFKIDIINIIPLLSVSGTEF 225


>gi|291616899|ref|YP_003519641.1| PflA [Pantoea ananatis LMG 20103]
 gi|291151929|gb|ADD76513.1| PflA [Pantoea ananatis LMG 20103]
          Length = 290

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 74/245 (30%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E ++  VL  R  +    G     G        
Sbjct: 73  GCLMRCLYCHNRDTWDTHAGKE--ITVEALMADVLSYRHFMNASGGGVTASGGEAILQAE 130

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +    D+ G              + P I  + +    
Sbjct: 131 FVRDWFRACKAEG----------IHTCLDTNGF----------VRRYDPVIDELLDATD- 169

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++++  ILV ++    L+        Y       R    +V++ G +D   
Sbjct: 170 LVMLDLKQMNDEVHQILVGVSNHRTLD-----FARYLQKKGK-RTWIRFVVVPGYSDDDD 223

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
               L    + +    KI L+P++     ++                ++ +      + R
Sbjct: 224 TVHRLGAFTQDMANVEKIELLPYHELGKHKWIAMGEEYKLDGVKPPTKETMERVKNILLR 283

Query: 344 SGYSS 348
            G+  
Sbjct: 284 YGHEV 288


>gi|86158799|ref|YP_465584.1| radical SAM family protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775310|gb|ABC82147.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 446

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 33/204 (16%)

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQ---------KLVRNLTAEEILLQVLLARSLLGDFPG 163
           R    + S   C+  C  C +            ++ R  TAEE+    +  R L      
Sbjct: 186 RDEGAIPSSAACNAACVGCLSEQDEGMPPSSHERIARPPTAEEMAD--VAVRHLERATGR 243

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
                G                  GEPL  +  ++K++ +          +  +  +T+G
Sbjct: 244 VMISFGQGCE--------------GEPLLRWKEIEKAIRLIRART----RRGTLHANTNG 285

Query: 224 FVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
            +P  +AR+       + +SL++ S DL          Y LE ++ A R     +    +
Sbjct: 286 SLPEALARLIAAGLESVRVSLNSASPDLYAAYYRPT-GYALEDVVRAVR--AAKAGGAYV 342

Query: 283 TFEYVMLKGINDSPRDALNLIKIL 306
               +   G+ D   +A  L +++
Sbjct: 343 ALNLLTFPGVTDRAGEAERLCRLV 366


>gi|189346211|ref|YP_001942740.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium limicola
           DSM 245]
 gi|189340358|gb|ACD89761.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium limicola
           DSM 245]
          Length = 424

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 63/161 (39%), Gaps = 23/161 (14%)

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239
           + + G G+P  N D   ++L +  +       +  + ++T+G   +P I  + E     +
Sbjct: 78  VGIAGPGDPFANPDETMETLRLVREHY----PEMLLCVATNGLDLMPWIDELAELQVSHV 133

Query: 240 AISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            I+++A+  ++ + +                 K  +   ++A +    +          +
Sbjct: 134 TITINAIDPEVGSEIYAWVRHKKKMYRDIEAAKLLIGNQLEALKRLKEV--GVTAKVNSI 191

Query: 288 MLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327
           ++ GIND     +++ + +  + A I N +P+       + 
Sbjct: 192 IIPGINDG--HVIDVARKVSELGADILNCLPYYQTTETLFE 230


>gi|327393327|dbj|BAK10749.1| pyruvate formate-lyase 1- activating enzyme PflA [Pantoea ananatis
           AJ13355]
          Length = 290

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 74/245 (30%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +         +T E ++  VL  R  +    G     G        
Sbjct: 73  GCLMRCLYCHNRDTWDTHAGKE--ITVEALMADVLSYRHFMNASGGGVTASGGEAILQAE 130

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E           +    D+ G              + P I  + +    
Sbjct: 131 FVRDWFRACKAEG----------IHTCLDTNGF----------VRRYDPVIDELLDATD- 169

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + L  +++++  ILV ++    L+        Y       R    +V++ G +D   
Sbjct: 170 LVMLDLKQMNDEVHQILVGVSNHRTLD-----FARYLQKKGK-RTWIRFVVVPGYSDDDD 223

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
               L    + +    KI L+P++     ++                ++ +      + R
Sbjct: 224 TVHRLGAFTQDMANVEKIELLPYHELGKHKWIAMGEEYKLDGVKPPTKETMERVKNILLR 283

Query: 344 SGYSS 348
            G+  
Sbjct: 284 YGHEV 288


>gi|315608967|ref|ZP_07883939.1| pyruvate formate-lyase activating enzyme [Prevotella buccae ATCC
           33574]
 gi|315249347|gb|EFU29364.1| pyruvate formate-lyase activating enzyme [Prevotella buccae ATCC
           33574]
          Length = 249

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 77/239 (32%), Gaps = 47/239 (19%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C FC+   +    +   +TA+E+L +    RS  G   G                
Sbjct: 34  GCPMRCQFCHNPDSWQTGVGEKMTADELLDRAEHYRSYWGREGG---------------- 77

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS--FSKRRITLSTSG-FVPNIARVGEEIG 236
             I + G GE L   D + +    A    G++          +  G +      + +   
Sbjct: 78  --ITVSG-GEALMQIDFLTELFRKA-HERGINTCLDTSAQPFTRQGAWFAKFEELMKYTD 133

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             + + +  + +D    L   + +  L+     C  Y    +   +   +V++ GI D  
Sbjct: 134 -TILLDIKHIDDDEHRKLTKHSNRNILD-----CARYLSDIHK-PVWIRHVLIPGITDRD 186

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
                L   L  +    +++++P++     +Y                 + I      +
Sbjct: 187 DYLARLRTFLNTLTNVERVDVLPYHTLGTYKYEKLGLDYPLKGVEPPTPERIENAKRKL 245


>gi|312137141|ref|YP_004004478.1| radical sam domain protein [Methanothermus fervidus DSM 2088]
 gi|311224860|gb|ADP77716.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088]
          Length = 383

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 23/158 (14%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L C FC     +  R+   + I+    L              E   I     K    
Sbjct: 93  GCNLNCIFCSVDEGRFSRSRFVDYIVDVDYLVE------------EFEKISKFKGKNLEA 140

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARVGEEIGVML 239
            + G GEP   +  + + +   +D   +S     I++ ++G       I R+  ++   +
Sbjct: 141 HIDGQGEPSL-YPYLVELIEGLNDLKEVSI----ISMQSNGIPLNKKIIDRLEGKLD-RI 194

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
            +S+ A+   + N L     KYPL+ +++   +     
Sbjct: 195 NLSISALDQKIANKL--HGVKYPLKKILELAEYIANSK 230


>gi|288927096|ref|ZP_06420984.1| pyruvate formate-lyase 1-activating enzyme [Prevotella buccae D17]
 gi|288336123|gb|EFC74516.1| pyruvate formate-lyase 1-activating enzyme [Prevotella buccae D17]
          Length = 243

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 76/239 (31%), Gaps = 47/239 (19%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C FC+   +    +   +T +E+L +    RS  G   G                
Sbjct: 31  GCPMRCRFCHNPDSWQTGVGEKMTTDELLDRAEHYRSYWGREGG---------------- 74

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS--FSKRRITLSTSG-FVPNIARVGEEIG 236
             I + G GE L   D + +    A    G++          +  G +      + +   
Sbjct: 75  --ITVSG-GEALMQIDFLTELFRKA-HERGINTCLDTSAQPFTRQGAWFAKFEELMKYTD 130

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             + + +  + +D    L   + +  L+     C  Y    +   +   +V++ GI D  
Sbjct: 131 -TILLDIKHIDDDEHRKLTKHSNRNILD-----CARYLSDIHK-PVWIRHVLIPGITDRD 183

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
                L   L  +    +++++P++     +Y                 + I      +
Sbjct: 184 DYLARLRAFLDTLTNVERVDVLPYHTLGTYKYEKLGLDYPLKGVEPPTPERIENAKRKL 242


>gi|94991832|ref|YP_599931.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS2096]
 gi|94545340|gb|ABF35387.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes
           MGAS2096]
          Length = 287

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 78/234 (33%), Gaps = 45/234 (19%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N    E+  Q    R++          +       G  +S  
Sbjct: 59  GCKLRCQYCH--------NPDTWEMANQQFKIRTVNDVLKEALQYKHFWGKKGGITVSG- 109

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF----VPNIARVGEEIGV- 237
                GE +   D    +L I +  +G+       TL T GF     P   +V + +   
Sbjct: 110 -----GEAMLQID-FITALFIEAKKLGI-----HTTLDTCGFTYRPTPEYHQVLDNLLAV 158

Query: 238 -MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             L +      ++ ++ +V    + P + ++   R+         +   +V++ G+ D  
Sbjct: 159 TDLILLDLKEIDEKQHKIVT---RQPNKNILQFARYLSDK--QIPVWIRHVLVPGLTDID 213

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVT 336
                L + +K +    K  ++P++     ++                ++ +  
Sbjct: 214 DHLTRLGEFVKTLKNVDKFEVLPYHTMGEFKWRELGIPYQLEGVKPPTKERVQN 267


>gi|312087917|ref|XP_003145659.1| calponin protein 2 [Loa loa]
 gi|307759177|gb|EFO18411.1| calponin protein 2 [Loa loa]
          Length = 185

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 8/93 (8%)

Query: 259 RKYPLEMLIDACRHYPGLSN----ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314
            ++ +E   +        +N        TFE    + + D+ +D   L  ++  +  K N
Sbjct: 3   ARFSIEEAQEVLFWIEHATNIQFAKDPSTFETA--QDVADALKDGTQLCLLMNRLLDKTN 60

Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347
            +P+NP P   +     ++I  F + IK  G  
Sbjct: 61  ALPYNPKPKMPFHK--MENISNFLDAIKAYGVP 91


>gi|284047923|ref|YP_003398262.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731]
 gi|283952144|gb|ADB46947.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731]
          Length = 468

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 24/202 (11%)

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           LL  P   +      E V        +LC+     C+L C +C+  T     +       
Sbjct: 71  LLFSPDFPVPDTFSDEPVL------KSLCLHVAHDCNLRCGYCFADTGDFGGH------- 117

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV---KKSLSIAS 205
                 R+L+      + IE  +  S  R    + + G GEPL N   V      +    
Sbjct: 118 ------RALMSKEVARKAIEFAIAGSKQRHNLELDLFG-GEPLMNMPVVKYIVDYVRQRE 170

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265
              G +  K  +T + +     I +   +  VML +SL        N+          + 
Sbjct: 171 KETGKNI-KLTLTTNGTLLTDEIVKYLNDNRVMLVLSLDGSKKTHDNMRPYPGHVGSYDA 229

Query: 266 LIDACRHYPGLSNARRITFEYV 287
            +   R      + +       
Sbjct: 230 AVKGFRKVIESRHGKNYYLRGT 251


>gi|224540942|ref|ZP_03681481.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526175|gb|EEF95280.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM
           15897]
          Length = 306

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 53/239 (22%)

Query: 99  GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158
           G +++E   I    +   C      C   C       +  ++  T EE++   +      
Sbjct: 76  GAIKMEDGLIRIDHKT--CDHCME-CVKACPGKALTQEGEIK--TVEEVVDICMQDIDFY 130

Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
            +  G                   V +  GE +  +D +   +       GL      + 
Sbjct: 131 EESNGG------------------VTLSGGEAMVQYDFMMALVHAL-KEKGL-----HLA 166

Query: 219 LSTSGFVPN--IARVGEEIGVMLAISLHAVSN-------DLRNILVPINRKYPLEMLIDA 269
           + T+G V +    +      ++L   +             + N ++  N K+ +E  ++ 
Sbjct: 167 IETTGIVDHEKFKKAAPLFDLLL-FDVKQADPMKHKKGTHVTNEVIQKNFKWAIEQGLNV 225

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL 327
               P             ++ G N++  DA  L   +K   AK + L+PF+ +   +Y 
Sbjct: 226 LPRIP-------------VIPGFNETLEDAKELATCIKEAGAKDVQLLPFHQFGENKYK 271


>gi|153952959|ref|YP_001393724.1| glycyl radical activating protein [Clostridium kluyveri DSM 555]
 gi|146345840|gb|EDK32376.1| Predicted glycyl radical enzyme activator [Clostridium kluyveri DSM
           555]
          Length = 258

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 14/87 (16%)

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI---NLIPF-----------NPWPG 323
           +  +I    +++K +N   +    ++  L+     I   NL+P+           N    
Sbjct: 170 HRGKINLRLILIKDVNVDDQAICGIVDWLQEQNISIESINLLPYHDFGRDKYRNLNRECT 229

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPI 350
             +     + +    E  +++GYS  +
Sbjct: 230 QNFEKPSDERMNEIKEYFEKAGYSVKV 256


>gi|167755395|ref|ZP_02427522.1| hypothetical protein CLORAM_00909 [Clostridium ramosum DSM 1402]
 gi|167704334|gb|EDS18913.1| hypothetical protein CLORAM_00909 [Clostridium ramosum DSM 1402]
          Length = 299

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 14/93 (15%)

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
           N L+  N K+ L+  I+     P             ++   NDS  DA  L ++LK I  
Sbjct: 201 NDLIIKNLKWALQNKIEVLPRIP-------------VIPDFNDSLNDAKGLARLLKNIGV 247

Query: 312 -KINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343
            K+ L+PF+ +   +Y   + +  +   + + +
Sbjct: 248 LKVQLLPFHQFGEKKYEMLNLEYSLKNKKALHK 280


>gi|240102758|ref|YP_002959067.1| Radical SAM protein, elongator protein 3/MiaB/NifB related
           [Thermococcus gammatolerans EJ3]
 gi|239910312|gb|ACS33203.1| Radical SAM protein, elongator protein 3/MiaB/NifB related
           [Thermococcus gammatolerans EJ3]
          Length = 419

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 76/207 (36%), Gaps = 25/207 (12%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           + ++    + +    GC+L+C FC        R       L  V+    L+  F     I
Sbjct: 109 LIDRGTNLIQIRGVSGCNLSCIFCSVDEGPYSR----TRKLDYVVDIDYLMKWFDEVARI 164

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNV--KKSLSIASDSMGLSFSKR-RITLSTSGF 224
           +G  + +         + G GEPL     V   ++L           S +   TL T   
Sbjct: 165 KGKGLEAH--------LDGQGEPLIYPFRVELVQALR--EHPNVSVISMQSNGTLLTDKL 214

Query: 225 VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
           V     + E     + +S+H++  +   +L+   + Y L+ +++             +  
Sbjct: 215 V---EELAEAGLDRVNLSIHSLDPEKAKMLM-GMKSYDLDHVLEMAEALVNA--GIDVLI 268

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPA 311
             V++ GIND   +A   I+  + I A
Sbjct: 269 APVIIFGIND--DEAEAFIEFARKIGA 293


>gi|300855530|ref|YP_003780514.1| FeMo cofactor biosynthesis protein NifB [Clostridium ljungdahlii
           DSM 13528]
 gi|300435645|gb|ADK15412.1| FeMo cofactor biosynthesis protein NifB [Clostridium ljungdahlii
           DSM 13528]
          Length = 423

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 80/216 (37%), Gaps = 42/216 (19%)

Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           C+++C+FC          R     E+L             P     +  ++    R ++ 
Sbjct: 38  CNVSCNFCNRKYDCVNETRPGVTSEVL------------TPEGARDKFKIVRDKVRNLTV 85

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITLSTSGFVPNI--ARVGEEIGVM 238
           + + G G+PL NFD  KKS+ +         SK     LST+G +      ++ E     
Sbjct: 86  VGIAGPGDPLANFDETKKSIELIKKE-----SKDITFCLSTNGLMLPFYADKLIELGVTH 140

Query: 239 LAISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEY 286
           L ++++AV   +   +                 +  L   +   ++        ++    
Sbjct: 141 LTVTINAVDPKIGGKVYKFVNYLGDTFVGEEAGRVLLNNQLSGLKYAAQKGIVCKVNI-- 198

Query: 287 VMLKGINDSPRDALNLIKILKGIPAK----INLIPF 318
           VM+KGIND       ++K +K   A     ++LIP 
Sbjct: 199 VMIKGINDL--HIPEIVKKVKECGAYMTNIMHLIPV 232


>gi|125718548|ref|YP_001035681.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK36]
 gi|125498465|gb|ABN45131.1| Pyruvate formate-lyase-activating enzyme, putative [Streptococcus
           sanguinis SK36]
 gi|325690982|gb|EGD32982.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK115]
 gi|325695084|gb|EGD36987.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK150]
 gi|327470462|gb|EGF15918.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK330]
 gi|327490123|gb|EGF21911.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK1058]
 gi|332359096|gb|EGJ36917.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK49]
 gi|332367349|gb|EGJ45083.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis
           SK1059]
          Length = 269

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 35/214 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E+                    E +           I
Sbjct: 41  GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDVLQEALRYKGFWGNKGGI 87

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237
            + G GE L   D +   +++ + +  L       TL T           + +  + + V
Sbjct: 88  TVSG-GEALLQIDFL---IALFTKAKELGI---HCTLDTCALPFRNTPRYLKKFDKLMAV 140

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              + + +  ++ +   I+     K      I AC  Y      + +   +V++ G+ D 
Sbjct: 141 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 194

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             D + L K +K +    K  ++P++     ++ 
Sbjct: 195 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 228


>gi|332886402|gb|EGK06646.1| pyruvate formate-lyase 1-activating enzyme [Dysgonomonas mossii DSM
           22836]
          Length = 239

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 49/242 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+                           +    E  E +       +   +
Sbjct: 27  GCPLRCLYCHNPD---------------TWNMNDKKHELTPEEAFEEVKKVKNFIRSGGV 71

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
            + G GEPL     + +   +               + TSG++    +  V E   ++L 
Sbjct: 72  TISG-GEPLLQPQFIIELFKLCKSE------GLHTAIDTSGYILNDKVKEVLEYTDLVL- 123

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD-- 298
           + +  ++ D    L       PLE  +   ++   +     +   YV++ G  D   D  
Sbjct: 124 LDIKHINPDKYKNLTAK----PLEPTLRFMQYLSEIEK--PVWLRYVLVPGFTDDDEDLN 177

Query: 299 --ALNLIKILKGIPAKINLIPFNPWP-------GCEYL-----CSDQKDIVTFSECIKRS 344
             A  + +  K +  +++++PF+          G +Y        DQ +I       +  
Sbjct: 178 DWAKQVSEY-KNVQ-RVDILPFHQMGLHKWEQLGEDYKLRDIAPPDQSEIEKAENIFRNY 235

Query: 345 GY 346
           G 
Sbjct: 236 GL 237


>gi|296131877|ref|YP_003639124.1| Radical SAM domain protein [Thermincola sp. JR]
 gi|296030455|gb|ADG81223.1| Radical SAM domain protein [Thermincola potens JR]
          Length = 331

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 69/220 (31%), Gaps = 37/220 (16%)

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC                  Q         +         +   +  +   N
Sbjct: 80  VGCNLRCGFC------------------QNWTIAHGDPETVEVSPELLVEAAAREKTNGN 121

Query: 182 I-VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           I +     EPL  ++ V+ +    + + GL     +  L T+GF+     + + +  + A
Sbjct: 122 IGIAYTYSEPLMWYEFVRDAAR-LAHAKGL-----KNVLVTNGFINP-EPMEDLLPYIDA 174

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +++       R+          L  +           +    T    ++ G+NDS  +  
Sbjct: 175 MNID--VKAFRDEYYNTTCAGELHPVKATVEKVFAKCHVEITTL---LVTGLNDSEEEIG 229

Query: 301 NLIKILKG----IPAKINLIPFNPWPGCEYLCSDQKDIVT 336
            L   L G    IP    L  + P    +   +  + +  
Sbjct: 230 ELADWLAGLSPDIPLH--LSRYFPNYKMDLPPTPLETMER 267


>gi|226324375|ref|ZP_03799893.1| hypothetical protein COPCOM_02156 [Coprococcus comes ATCC 27758]
 gi|225206823|gb|EEG89177.1| hypothetical protein COPCOM_02156 [Coprococcus comes ATCC 27758]
          Length = 299

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 69/220 (31%), Gaps = 37/220 (16%)

Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205
           EI+ Q    + L+ +              V      ++ M         D + +      
Sbjct: 98  EIVGQEYPVKELVKELMKDRMFYEQSGGGVTLSGGEVMAMST-------DYILQIAKALK 150

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--MLAISLHAVSNDLRNILVPINRKYPL 263
                  S   +T+ T G+V    +    +         +  +  +L    + ++ K  L
Sbjct: 151 KEE---IS---LTIDTCGYVSY-DKFEAILPYVDTFLYDVKVMDPELHKKYIGVDNKLIL 203

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNP 320
           + L+             RI      +K +N + ++  + I  LK        +NL+P++ 
Sbjct: 204 DNLVKLSDA------GARIYIRIPTIKEVNGNVQNMEDTIHFLKKHGIHPAQVNLLPYHN 257

Query: 321 WPGCEY------------LCSDQKDIVTFSECIKRSGYSS 348
               +Y               +++++ +F +  +     +
Sbjct: 258 TGSSKYPKLGMEYKGTDLHAPEKEEMESFVKLFRMQDIPT 297


>gi|124268661|ref|YP_001022665.1| hypothetical protein Mpe_A3477 [Methylibium petroleiphilum PM1]
 gi|124261436|gb|ABM96430.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 359

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 14/132 (10%)

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            L + L  V+ +LR  ++P     P+E  +++     G+    +++  Y++  G+ D+  
Sbjct: 223 TLGMHLEVVTPELRERVMPGKATVPVERYLESFEAAVGVFGRGQVS-TYIL-AGLGDTRE 280

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSP---IR 351
             L++ + L  +     ++PF P  G           + +      ++  G       +R
Sbjct: 281 AILSIAEKLVALGVYPFVVPFVPISGTPLEDHPSPSPEFMKA---VLEPLGAMVSAGGLR 337

Query: 352 TPRGLDILAACG 363
           +    DI A CG
Sbjct: 338 S---ADIKAGCG 346


>gi|119357644|ref|YP_912288.1| radical SAM domain-containing protein [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354993|gb|ABL65864.1| Radical SAM domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 310

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 74/230 (32%), Gaps = 40/230 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C +C        ++           +        P     E     + G  I  I 
Sbjct: 27  CTWNCIYC---QLGRTKH----------YVTERCEFYPPDAILSEIRQTLAGGAHIDWIT 73

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFS------KRRITLSTSG---FVPNIA-RVGE 233
            +G GE L                +G             I + T+G   ++P +   + E
Sbjct: 74  FVGSGETL------------LYKGLGFLIGELKKITPIPIAVITNGSLLYLPEVRSELIE 121

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              V+   SL+A S +L   +      +     +D    +       R+  E ++L+GIN
Sbjct: 122 ADAVLP--SLNAGSKELYERIDRPAPGFTFRQHLDGLIQF-RREYRGRLWVEVMLLRGIN 178

Query: 294 DSPRDALNLIKILKGI-PAKINLI-PFNPWPGCEYLCSDQKDIVTFSECI 341
           DS     +L   LK + P  ++L+ P  P    +    +   +      +
Sbjct: 179 DSDEALYDLAAALKLVSPDMVHLVQPTRPATESDVSVPEDDRVEQAIRIL 228


>gi|241668391|ref|ZP_04755969.1| lysine 2,3-aminomutase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876924|ref|ZP_05249634.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842945|gb|EET21359.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 328

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 74/218 (33%), Gaps = 50/218 (22%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
            K  G + + SQ  C++ C +C+        N+                   PG +D   
Sbjct: 97  HKYHGRVLLISQTSCAIHCRYCFRKEFDYKENI-------------------PGRKDWLK 137

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGF 224
                   +    V++  G+PL N D V +     +   S    L   S+  + L     
Sbjct: 138 AFEYIANDQTIEEVILSGGDPLLNNDEVLEFFIENIQQISHIKRLRIHSRIPVVLPERMT 197

Query: 225 VPNIARVGEE-IGVMLAISLHAVS---NDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
              +  + E  +  +L I ++  +   + +R +L  I++                  +  
Sbjct: 198 NKLLKILSEHRLDTVLVIHVNHPNELDDGIREVLKEIHK------------------HGI 239

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
            I  +  +LK IND       L   L  I AK+  IP+
Sbjct: 240 IILNQSTLLKDINDDANVLYALSTKL--INAKV--IPY 273


>gi|150009974|ref|YP_001304717.1| pyruvate-formate lyase-activating enzyme [Parabacteroides
           distasonis ATCC 8503]
 gi|255012762|ref|ZP_05284888.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_7]
 gi|256838769|ref|ZP_05544279.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
           D13]
 gi|298374331|ref|ZP_06984289.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_19]
 gi|301307860|ref|ZP_07213816.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 20_3]
 gi|149938398|gb|ABR45095.1| pyruvate-formate lyase-activating enzyme [Parabacteroides
           distasonis ATCC 8503]
 gi|256739688|gb|EEU53012.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
           D13]
 gi|298268699|gb|EFI10354.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_19]
 gi|300834203|gb|EFK64817.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 20_3]
          Length = 244

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 77/215 (35%), Gaps = 42/215 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC L C +C     +    K+   +T  E+L +VL  +S +                   
Sbjct: 28  GCPLRCLYCHNPDTWNPKGKVKYQMTPGELLTEVLRYKSFIARG---------------- 71

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
               + + G GEPL   + +K+         GL        L TSGFV   ++  E +  
Sbjct: 72  ---GVTVTG-GEPLLQPEFLKEFFR-LCQEQGL-----HTALDTSGFV-CTSKAWEVLDY 120

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              + + +  ++ DL + L+   ++    + +D                 +V++ G  D+
Sbjct: 121 ADLVLLDIKTLNPDL-HPLLAGVKQDNTLLFLDELER-----RGIDTWIRHVIVPGYTDN 174

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328
                 L + +       K+ L+P++     +Y  
Sbjct: 175 DEWLEALARYVSSYKVVRKVELLPYHTMGTYKYEQ 209


>gi|94266913|ref|ZP_01290568.1| Nitrogenase cofactor biosynthesis protein NifB [delta
           proteobacterium MLMS-1]
 gi|93452413|gb|EAT03027.1| Nitrogenase cofactor biosynthesis protein NifB [delta
           proteobacterium MLMS-1]
          Length = 424

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 72/205 (35%), Gaps = 33/205 (16%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
           P    +    +     +IS   + G G+P  N +   +++ + ++       +  + LS+
Sbjct: 60  PDQALVYLDRVLEKEPRISVAGIAGPGDPFANAEATMETVRLINEKH----PQMLLCLSS 115

Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL------------EMLI 267
           +G    P+I  +       + I+++AV   +   +    R   +               +
Sbjct: 116 NGMNIGPHIPELATLNVSHVTITINAVDPAVGEKIYGWVRDGKILYRGRQAAELLLGRQL 175

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327
           +A R     +    +    +M+ GIND       +   ++ + A +    FN        
Sbjct: 176 EAVRRL--KAAGITVKINCIMIPGINDH--HIPAVAAAMRDLEADL----FNCMALFPNA 227

Query: 328 CSDQKDIVTFSECIKRSGYS-SPIR 351
            +       F++ ++ S    + IR
Sbjct: 228 GTS------FADIVEPSKQELATIR 246


>gi|331003728|ref|ZP_08327222.1| molybdenum cofactor biosynthesis protein A [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330412111|gb|EGG91506.1| molybdenum cofactor biosynthesis protein A [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 323

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 69/183 (37%), Gaps = 32/183 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C++C    +K+   L+ +EI  QV  A S  G                   IS   
Sbjct: 20  CNFRCTYCMPEAKKVEETLSLDEIY-QVAFAASECG-------------------ISKFK 59

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           + G GEPL   + +   +   +D   +    + IT++++GF   + +  + +      S+
Sbjct: 60  ITG-GEPLV-REGIVDFIKRLNDLDNV----KDITMTSNGF--YLLKYADALKSAGISSI 111

Query: 244 HAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP-RDALN 301
           +   + L R     I     LE ++        +          V+ KG+ND    D + 
Sbjct: 112 NVSLDSLDREKFKKIAGVDALEDVMAGIE--ASIKAGIATKINTVIQKGVNDDELFDIIE 169

Query: 302 LIK 304
           L K
Sbjct: 170 LAK 172


>gi|328675885|gb|AEB28560.1| Lysine 2,3-aminomutase [Francisella cf. novicida 3523]
          Length = 328

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 87/265 (32%), Gaps = 62/265 (23%)

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LL Q   I+  E++D+  S D                  ++  +      R  + + +Q 
Sbjct: 62  LLKQVLPIVDEEVIDQAYSSD----------PLDEKNYNKVPGLLHKYHGR--VLLIAQT 109

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
            C++ C +C+        N+                   PG +D           +    
Sbjct: 110 SCAVHCRYCFRKEFDYKDNI-------------------PGRKDWLQAFEYIANDQSIEE 150

Query: 183 VMMGMGEPLCNFDNVKKS----LSIASDSMGLSFSKRRITLS-----TSGFVPNIARVGE 233
           V++  G+PL N D V +     +   +    L     RI +      T+  +  ++    
Sbjct: 151 VILSGGDPLLNNDEVLEFFIENIQQIAHIKRLRI-HSRIPVVLPERITTKLLRVLSE--H 207

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
            +  +L I ++  + +L +          +  ++          +   I  +  +LK IN
Sbjct: 208 RLDTILVIHVNHPN-ELDD---------NISEVLKEIH-----KHGIIILNQSTLLKDIN 252

Query: 294 DSPRDALNLIKILKGIPAKINLIPF 318
           D       L   L  I AK+  IP+
Sbjct: 253 DDANVLYALSTKL--INAKV--IPY 273


>gi|168181754|ref|ZP_02616418.1| radical SAM domain protein [Clostridium botulinum Bf]
 gi|237796520|ref|YP_002864072.1| radical SAM domain-containing protein [Clostridium botulinum Ba4
           str. 657]
 gi|182675181|gb|EDT87142.1| radical SAM domain protein [Clostridium botulinum Bf]
 gi|229261283|gb|ACQ52316.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 455

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 36/211 (17%)

Query: 107 YIPEKSRGT---LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           YI EKS      LC++    C+L C +C+    +                 R L+    G
Sbjct: 85  YIHEKSENFIKALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPGVG 131

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
            + I+ ++  S  RK   + + G GEPL  F  +K+ +  A +         R T++T+G
Sbjct: 132 KKAIDFVIEKSGPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEEKHNKTIRFTMTTNG 190

Query: 224 FVPNIARV----GEEIGVMLAISLHAV-SNDLR---------NILVPINRKYPLEMLIDA 269
            + N   +         ++L+I      ++++R         + ++P  +K  +  + D 
Sbjct: 191 TLLNQEIMDYLDKNMGNIVLSIDGRKEINDNVRVRVDGSGSYDSILPKIKK--MVEMRDK 248

Query: 270 CRHYPGLSNARRIT---FEYVMLKGINDSPR 297
            + Y       R     FE VM    ND   
Sbjct: 249 TKQYYARGTFTRENLDFFEDVMHMANNDFDE 279


>gi|168179558|ref|ZP_02614222.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
 gi|226950493|ref|YP_002805584.1| radical SAM domain-containing protein [Clostridium botulinum A2
           str. Kyoto]
 gi|182669661|gb|EDT81637.1| radical SAM domain protein [Clostridium botulinum NCTC 2916]
 gi|226843376|gb|ACO86042.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 455

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 36/211 (17%)

Query: 107 YIPEKSRGT---LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           YI EKS      LC++    C+L C +C+    +                 R L+    G
Sbjct: 85  YIHEKSENFIKALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPGVG 131

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
            + I+ ++  S  RK   + + G GEPL  F  +K+ +  A +         R T++T+G
Sbjct: 132 KKAIDFVIEKSGPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEEKHNKTIRFTMTTNG 190

Query: 224 FVPNIARV----GEEIGVMLAISLHAV-SNDLR---------NILVPINRKYPLEMLIDA 269
            + N   +         ++L+I      ++++R         + ++P  +K  +  + D 
Sbjct: 191 TLLNQEIMDYLDKNMGNIVLSIDGRKEINDNVRVRVDGSGSYDSILPKIKK--MVEMRDK 248

Query: 270 CRHYPGLSNARRIT---FEYVMLKGINDSPR 297
            + Y       R     FE VM    ND   
Sbjct: 249 TKQYYARGTFTRENLDFFEDVMHMANNDFDE 279


>gi|219853617|ref|YP_002470739.1| hypothetical protein CKR_0274 [Clostridium kluyveri NBRC 12016]
 gi|219567341|dbj|BAH05325.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 266

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 14/87 (16%)

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI---NLIPF-----------NPWPG 323
           +  +I    +++K +N   +    ++  L+     I   NL+P+           N    
Sbjct: 178 HRGKINLRLILIKDVNVDDQAICGIVDWLQEQNISIESINLLPYHDFGRDKYRNLNRECT 237

Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPI 350
             +     + +    E  +++GYS  +
Sbjct: 238 QNFEKPSDERMNEIKEYFEKAGYSVKV 264


>gi|328957563|ref|YP_004374949.1| formate C-acetyltransferase activating enzyme [Carnobacterium sp.
           17-4]
 gi|328673887|gb|AEB29933.1| formate C-acetyltransferase activating enzyme [Carnobacterium sp.
           17-4]
          Length = 253

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 78/244 (31%), Gaps = 55/244 (22%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C FC+   T         TA+++L + L  +   G   G                
Sbjct: 31  GCRMRCEFCHNPDTWNMGGGTPYTADQLLEEALSYKDYWGKKGG---------------- 74

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234
             I + G GEPL + D + +    A    G+       TL T G       P  +R  E 
Sbjct: 75  --ITVSG-GEPLLHIDFLIEYFRKA-KEEGI-----HTTLDTCGQPFTYEEPFFSRFEEL 125

Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           +     L   +  + N+    L            I     Y    N   +   +V++   
Sbjct: 126 MKYTDLLLFDIKHIDNEKHKRLTMHGN-----ENILNMSSYLSKINK-PVWIRHVLVPER 179

Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFS 338
           +D   D + L + +  +    K+ ++P++     +Y                 + +   +
Sbjct: 180 SDDDDDLIRLSEFIHSLGNVYKVEILPYHKLGVYKYAALNIPYKLKDIEPPTLERVENAN 239

Query: 339 ECIK 342
             ++
Sbjct: 240 RLLR 243


>gi|206895341|ref|YP_002246950.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737958|gb|ACI17036.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM
           5265]
          Length = 244

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 61/197 (30%), Gaps = 32/197 (16%)

Query: 124 CSLTCSFC----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           CS  C FC    +T    L R+      + +VL                  +     + +
Sbjct: 38  CSFDCVFCELSVHTNVLTLERHTYVS--VNEVL----------------KELRNFPTQGV 79

Query: 180 SNIVMMGMGEP--LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
             I + G GEP    N   V  +L        L  S      ST         + +   V
Sbjct: 80  DYIALSGAGEPTLAANMGEVIDALHQKYSVPVLVLSNG----STVFMKDVQEELRKADAV 135

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            L  S  ++  +    L           +      +   S A  + FE V++KGIND   
Sbjct: 136 KLTFS--SLKEESFKRLNQPAEGVTASKVARGIEEFAS-SYAGTLYFEVVVVKGINDDLS 192

Query: 298 DALNLIKILKGI-PAKI 313
           +    ++ L    P  I
Sbjct: 193 EVRKTVEFLAQFKPYHI 209


>gi|78188664|ref|YP_379002.1| MoaA/NifB/PqqE family protein [Chlorobium chlorochromatii CaD3]
 gi|78170863|gb|ABB27959.1| MoaA/NifB/PqqE family protein [Chlorobium chlorochromatii CaD3]
          Length = 312

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 83/242 (34%), Gaps = 41/242 (16%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
            +P KS    CV  Q+G         T  Q+       EEIL ++  A            
Sbjct: 21  LLPHKSCSWNCVYCQLG---RTKTYSTERQEF---FAREEILAEISQALQQHPSLDW--- 71

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDN---VKKSLSIASDSMGLSFSKRRITLSTSG 223
                          I  +G GE +  +     +   +   +           I + T+G
Sbjct: 72  ---------------ITFVGSGETML-YRGIGWLIAEVKKLTS--------VPIAVITNG 107

Query: 224 FVPNIARVGEEIGVMLAI--SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
            + ++  V  E+    A+  SL+A S  L   +      +  +  +   + +       R
Sbjct: 108 SLFHLPEVRHELLQADAVLPSLNAGSEALHQRICRPAEGFTFQQHLAGLQAFRQEYCG-R 166

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGI-PAKINL-IPFNPWPGCEYLCSDQKDIVTFSE 339
           +  E ++L GIND+     +L + ++ I P  ++L +P  P P  E      + +     
Sbjct: 167 LWLEVMLLGGINDTDEALHDLAEAIRTINPNMVHLVLPTRPAPEHEVQLPTNERLERAIA 226

Query: 340 CI 341
            +
Sbjct: 227 IL 228


>gi|306824472|ref|ZP_07457818.1| pyruvate formate-lyase activating enzyme [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304433259|gb|EFM36229.1| pyruvate formate-lyase activating enzyme [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 264

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 70/214 (32%), Gaps = 35/214 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N     +                    E +           I
Sbjct: 37  GCHMRCQYCH--------NPDTWAM-----ETNKSRERTVDDVLTEALRYRGFWGDKGGI 83

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237
            + G GE L   D +  +L   +   G+       TL T           + +  + + V
Sbjct: 84  TVSG-GEALLQIDFLI-ALFTKAKEKGI-----HCTLDTCALPFRNKPRYLEKFNKLMAV 136

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              + + +  ++++   I+     K      I AC  Y      + +   +V++ G+ D 
Sbjct: 137 TDLVLLDIKEINDEQHRIVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 190

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             D + L K +K +    K  ++P++     ++ 
Sbjct: 191 DEDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224


>gi|330819569|ref|YP_004348431.1| radical SAM domain protein [Burkholderia gladioli BSR3]
 gi|327371564|gb|AEA62919.1| radical SAM domain protein [Burkholderia gladioli BSR3]
          Length = 357

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 20/135 (14%)

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            L + L AV+  +R  ++P     PL   +DA      +    +++  Y++  G+ D+P 
Sbjct: 221 TLGMHLEAVTPAVRERIMPGKASVPLSRYLDAFDAAVAVFGRGQVS-TYIL-AGLGDTPE 278

Query: 298 DALNLIK--ILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSECIKRSGYSS 348
             L + +  I +G+   +  +PF P  G             +          +  +G   
Sbjct: 279 AILAMSEDLIARGVYPFV--VPFVPISGTPLESHPAPSPAFMREVLVPLGAMLGAAGL-- 334

Query: 349 PIRTPRGLDILAACG 363
                R  DI A CG
Sbjct: 335 -----RSADIKAGCG 344


>gi|148381015|ref|YP_001255556.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931936|ref|YP_001385386.1| radical SAM domain-containing protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935318|ref|YP_001388793.1| radical SAM domain-containing protein [Clostridium botulinum A str.
           Hall]
 gi|148290499|emb|CAL84627.1| putative radical SAM protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927980|gb|ABS33480.1| radical SAM domain protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931232|gb|ABS36731.1| radical SAM domain protein [Clostridium botulinum A str. Hall]
          Length = 455

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 76/200 (38%), Gaps = 33/200 (16%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+    +                 R L+    G + I+ ++  S
Sbjct: 96  ALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPGVGKKAIDFVIEKS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             RK   + + G GEPL  F  +K+ +  A +         R T++T+G + N   +   
Sbjct: 143 GPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEEKHNKTIRFTMTTNGTLLNQEIMEYL 201

Query: 232 -GEEIGVMLAISLHAV-SNDLR---------NILVPINRKYPLEMLIDACRHYPGLSNAR 280
                 ++L+I      ++++R         + ++P  +K  +  + D  + Y       
Sbjct: 202 DKNMGNIVLSIDGRKEINDNVRVRVDGSGSYDSILPKIKK--MVEMRDRTKQYYARGTFT 259

Query: 281 RIT---FEYVMLKGINDSPR 297
           R     FE +M    ND   
Sbjct: 260 RENLDFFEDIMHMANNDFDE 279


>gi|58696768|ref|ZP_00372305.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58537042|gb|EAL60178.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 375

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 92/274 (33%), Gaps = 45/274 (16%)

Query: 90  LRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCY-TGTQKLVRNLTAEEI 147
           L    + +    ++E V I   + +    +  Q GC+ +C+FC  T  +   R++    I
Sbjct: 66  LLNDDKILVSDNQVEPVLINGFEDKSRAFIEIQNGCNHSCTFCSITEARGNNRSVPINSI 125

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
           + Q+ +             ++     +      ++  M           V K +      
Sbjct: 126 IEQIRIFVENGYQEVVFTGVDITDFGTDLLGKPSLGSM--------IRRVLKDIPEL--- 174

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGE------EIGVMLAISLHAVSNDLRNILVPINRKY 261
                  +R+ LS+         + +       +   L +SL + +N    IL  + R++
Sbjct: 175 -------KRLRLSSIDVAEVDDELMDLIANESRLMPHLHLSLQSGNN---LILKRMKRRH 224

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGI-NDSPRDALNLIKILKGIPAKINLIPFNP 320
             E +I+ C     L     I F   ++ G   ++     + + +LK    K N++  + 
Sbjct: 225 NREQVIEFCHKMKSLRP--NIAFGADIIAGFPTETDEMFQDTVDLLK----KTNIVYLHA 278

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           +P  E   +    +               +R  R
Sbjct: 279 FPYSERKNTPAARMPQ---------VPENVRKER 303


>gi|114775695|ref|ZP_01451263.1| pyruvate formate lyase activating enzyme [Mariprofundus
           ferrooxydans PV-1]
 gi|114553806|gb|EAU56187.1| pyruvate formate lyase activating enzyme [Mariprofundus
           ferrooxydans PV-1]
          Length = 264

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 73/209 (34%), Gaps = 32/209 (15%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC   C +C+      + N T    L  V      + +F       G +  S        
Sbjct: 50  GCQFRCLYCHNPDTIKMHNGT----LRTVDHVLEEIAEFAAFLRFAGGLTISG------- 98

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
                GEPL   D V++   +A     L        L T GF+         ++I ++L 
Sbjct: 99  -----GEPLMQADFVREVFYLAKHDYHL-----HTALDTQGFLAAHLEDEWFDDIDLVL- 147

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + +  +  D    L       PL+  +D  R    +   +++   YV++ G  D   D  
Sbjct: 148 LDIKHIDPDKYLALTSQ----PLQPTLDFARRLSDM--GKKMWIRYVLVPGYTDDFDDVE 201

Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYL 327
            L   +  +    ++ ++PF+     ++ 
Sbjct: 202 ALADFVLTLDGVERVEVLPFHKMGEHKWE 230


>gi|39997892|ref|NP_953843.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39984837|gb|AAR36193.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
 gi|298506825|gb|ADI85548.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter sulfurreducens KN400]
          Length = 290

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 81/210 (38%), Gaps = 31/210 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C +C         +   E      + +R L  D    +  E M  P VG  I  I 
Sbjct: 35  CNIKCGYCS-----RKHDCANESRPG--VTSRLLTPDEAIVKVREVMASPVVGPIIKVIG 87

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241
           + G G+PL N +   ++  +  +     F      +ST+G     +I R+ +     L +
Sbjct: 88  IAGPGDPLAN-EETFETFRLVGEE----FPHLIKCMSTNGLLLPESIDRLHDLGLHSLTV 142

Query: 242 SLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +L+A+   + + +                 +  +E  ++  R   GL     +    V++
Sbjct: 143 TLNALDPAVGSRIYGHILYHGTVYRGEEGARILIENQLEGIRRAVGL--GMTVKVNTVLI 200

Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPF 318
            GIND      ++ + +K   A + N++P 
Sbjct: 201 PGINDG--QVSDIGRTVKEFGAFVMNIMPL 228


>gi|21674261|ref|NP_662326.1| MoaA/NifB/PqqE family protein [Chlorobium tepidum TLS]
 gi|21647430|gb|AAM72668.1| moaA/nifB/pqqE family protein [Chlorobium tepidum TLS]
          Length = 312

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 18/175 (10%)

Query: 141 NLTAEEILLQV----LLARSLLGDFPGCEDI-EGMVIPSVGRKISNIVMMGMGEPLCNFD 195
           + T   I  Q+             FP  E + E +   + G+ I  I  +G GE      
Sbjct: 26  SCTWNCIYCQLGRTTAFVTERREFFPKEEILSEILETVASGKPIDWITFVGSGE-----T 80

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIAR-VGEEIGVMLAISLHAVSNDLR 251
            + K L      +    SK  + + T+G +   P + R + E   V+   SL+A S +L 
Sbjct: 81  TLYKGLDWLIAEV-KKISKIPVAVITNGSLLSDPEVRRELLEADAVLP--SLNAGSPELF 137

Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
             +      +  E  ++  R +       ++  E ++++G+NDS      +  +L
Sbjct: 138 ERIDRPAPGFTFEKHVEGLRLF-RQEYRGKLWVEVMLIRGVNDSEEALKEMAAVL 191


>gi|332359364|gb|EGJ37185.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK49]
          Length = 267

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 79/267 (29%), Gaps = 81/267 (30%)

Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           GC L C +C                    + T    R  + EEI+ +VL  R    +  G
Sbjct: 39  GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
              + G  I                          K++  A+   G+        + T+ 
Sbjct: 97  GLTLSGGEIFDQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132

Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           FV +  +  + I     +   L       H     ++N L+  N  Y             
Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY------- 326
             ++ + I     ++   NDS  DA     +   +   ++ L+PF+ +   +Y       
Sbjct: 179 AFTHQKMIVLRIPIIPDFNDSLEDAEQFATLFNELSIDQVQLLPFHQFGENKYKLLGRKY 238

Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348
                     +D+  + +   +   + 
Sbjct: 239 AMEDVKALHPEDLFEYQDVFLKHDINC 265


>gi|291571642|dbj|BAI93914.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 575

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 20/204 (9%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           I +     + V + + CSL+C  C    Q   R         Q+ L +            
Sbjct: 81  IRKFHLNKIQVETSLSCSLSCWGCSRIKQVRQRR-------GQLFLDKKQFQTLIVSCAE 133

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
           +   I         +   G GEPL N     + + I S+         + TL+T+G    
Sbjct: 134 DNYNIDW-------VEYCGQGEPL-NHPEFSQFVKIVSEF----LPNTQQTLTTNGNNNF 181

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
              VGEE    + +S    S +   I             +         +N   +T++Y+
Sbjct: 182 NLSVGEETLHRIIVSCDGASQEKYEIYRRGGNFEKCIRFMKDAVANKNANNHPHVTWKYI 241

Query: 288 MLKGINDSPRDALNLIKILKGIPA 311
           +    NDS  +     +I + I  
Sbjct: 242 LFDH-NDSDEEIAKANEIAQNIGV 264


>gi|260891514|ref|ZP_05902777.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia hofstadii
           F0254]
 gi|260858897|gb|EEX73397.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia hofstadii
           F0254]
          Length = 254

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 82/217 (37%), Gaps = 39/217 (17%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQ--VLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           GC L C +C+        N+   EI  +  V+ A+ ++ +    +               
Sbjct: 39  GCPLRCLYCH--------NVDTWEIKDKKMVMTAQEVMKEILKVKGFIKTGG-------- 82

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVM 238
             V +  GEPL   + + +         G+        L TSG++      +V E +  M
Sbjct: 83  --VTVSGGEPLMQPEFLMELFK-LCRENGIQ-----TALDTSGYIFSDKAKQVLELVD-M 133

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           + + +  ++ +   IL  +     L+  +   ++   ++        YV++ G +D   D
Sbjct: 134 VLLDIKHINPEKYKILTSVE----LDNTLKFAKYLNEINK--PTWLRYVLVPGYSDDEND 187

Query: 299 ALNLIKI---LKGIPAKINLIPFNPWPGCEYLCSDQK 332
                K    LK +  +++++PF+     ++    ++
Sbjct: 188 LHEWAKFTSQLKNVE-RVDVLPFHQMGQYKWEKVGKE 223


>gi|315428146|dbj|BAJ49731.1| tRNA-modifying enzyme [Candidatus Caldiarchaeum subterraneum]
          Length = 285

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 17/180 (9%)

Query: 124 CSLTCSFCYTGTQKLVRNL-------TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           C++ C FC+     L R           EEIL +++  +  L    G             
Sbjct: 79  CNMMCVFCW-RFHTLNRVQPYDGEWDKPEEILERMIAEQRQLLSGFGGNPNVSKERFREA 137

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
            +  +I +   GEP   +  + + + +AS             ++       +  + ++  
Sbjct: 138 MEPMHIAISLDGEPTL-YPYLAEFIQLASSR-----GMTTFLVTNGTMPERLEELLQKAQ 191

Query: 237 VM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              L ISL+    +          K   E L+ +       S   R      ++K +N  
Sbjct: 192 PTSLYISLYGPDKETHVKTCKPLIKDSWERLLKSLELMGRFSC--RKIIRLTLVKDVNMH 249


>gi|298527946|ref|ZP_07015350.1| nitrogenase cofactor biosynthesis protein NifB [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511598|gb|EFI35500.1| nitrogenase cofactor biosynthesis protein NifB [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 430

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 20/174 (11%)

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLAI 241
           + G G+P+ N     ++++         F    + LS++G     ++  + +       +
Sbjct: 81  IAGPGDPMANAPQTLETIARVRSE----FPDLLLCLSSNGLNLPDHVTELKKLGVTHATV 136

Query: 242 SLHAVSNDLRNILVPINR----KYPLEMLIDACRHYPG------LSNARRITFEYVMLKG 291
           +++A+  +    +    R     Y                      N   +    ++L G
Sbjct: 137 TVNAIDPETGKDIYAWVRDSKVAYQGREAASLLWSRQKEAILKLRENGILVKMNSIVLPG 196

Query: 292 INDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344
           IND      ++ +    +    +N IP +P PG  +   D+ D   F + +++ 
Sbjct: 197 INDH--HIQDIAEKAGEMDVSLLNCIPVHPSPGARFENIDEPD-KAFIDSLRKK 247


>gi|150391254|ref|YP_001321303.1| nitrogenase cofactor biosynthesis protein NifB [Alkaliphilus
           metalliredigens QYMF]
 gi|149951116|gb|ABR49644.1| nitrogenase cofactor biosynthesis protein NifB [Alkaliphilus
           metalliredigens QYMF]
          Length = 415

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 81/223 (36%), Gaps = 41/223 (18%)

Query: 124 CSLTCSFCYTGT--QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           C++ C++C      Q   R     E+L             P     +  ++      +  
Sbjct: 38  CNIQCNYCNRKYDCQNESRPGVTSEVLS------------PEEALEKYKLVKEKLSNLKV 85

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG----V 237
           + + G G+PL NF+  KKSL +  +            LST+G +  ++   +EI      
Sbjct: 86  VGIAGPGDPLFNFEETKKSLELIKNYD----PDVTFCLSTNGLM--LSEYADEIQKMGIT 139

Query: 238 MLAISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFE 285
            L ++++A+   +   +                    +E  +             ++   
Sbjct: 140 HLTVTINAIDPKIAAQIYSTVYYKGKIYTGEEAGALMIEKQLLGLEKMKEKGIVCKVNI- 198

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327
            VM+KGIN+       ++K ++ +   + N++P  P  G ++ 
Sbjct: 199 -VMVKGINEH--HIEEVVKKVRTLGVFMSNIMPLIPAKGTKFE 238


>gi|42520370|ref|NP_966285.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410108|gb|AAS14219.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 408

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 92/274 (33%), Gaps = 45/274 (16%)

Query: 90  LRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCY-TGTQKLVRNLTAEEI 147
           L    + +    ++E V I   + +    +  Q GC+ +C+FC  T  +   R++    I
Sbjct: 99  LLNDDKILVSDNQVEPVLINGFEDKSRAFIEIQNGCNHSCTFCSITEARGNNRSVPINSI 158

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
           + Q+ +             ++     +      ++  M           V K +      
Sbjct: 159 IEQIRIFVENGYQEVVFTGVDITDFGTDLLGKPSLGSM--------IRRVLKDIPEL--- 207

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGE------EIGVMLAISLHAVSNDLRNILVPINRKY 261
                  +R+ LS+         + +       +   L +SL + +N    IL  + R++
Sbjct: 208 -------KRLRLSSIDVAEVDDELMDLIANESRLMPHLHLSLQSGNN---LILKRMKRRH 257

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGI-NDSPRDALNLIKILKGIPAKINLIPFNP 320
             E +I+ C     L     I F   ++ G   ++     + + +LK    K N++  + 
Sbjct: 258 NREQVIEFCHKMKSLRP--NIAFGADIIAGFPTETDEMFQDTVDLLK----KTNIVYLHA 311

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           +P  E   +    +               +R  R
Sbjct: 312 FPYSERKNTPAARMPQ---------VPENVRKER 336


>gi|125717152|ref|YP_001034285.1| pyruvate formate-lyase 3 [Streptococcus sanguinis SK36]
 gi|125497069|gb|ABN43735.1| Pyruvate formate-lyase 3, putative [Streptococcus sanguinis SK36]
 gi|328945301|gb|EGG39454.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK1087]
          Length = 267

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 79/267 (29%), Gaps = 81/267 (30%)

Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           GC L C +C                    + T    R  + EEI+ +VL  R    +  G
Sbjct: 39  GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
              + G  I +                        K++  A+   G+        + T+ 
Sbjct: 97  GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132

Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           FV +  +  + I     +   L       H     ++N L+  N  Y             
Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY------- 326
             ++ + I     ++   NDS  DA     +   +    + L+PF+ +   +Y       
Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSINQVQLLPFHQFGENKYKLLGRKY 238

Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348
                     +D+  + +   +   + 
Sbjct: 239 AMEDVKALHPEDLFEYQDVFLKHDINC 265


>gi|34496868|ref|NP_901083.1| pyruvate formate lyase activating enzyme [Chromobacterium violaceum
           ATCC 12472]
 gi|34102723|gb|AAQ59088.1| pyruvate formate lyase activating enzyme [Chromobacterium violaceum
           ATCC 12472]
          Length = 259

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 67/240 (27%), Gaps = 47/240 (19%)

Query: 78  EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TG 134
           + +S D T  +L    +        +  V+               GC   C +C+   T 
Sbjct: 12  QAVSTD-TIGYLHSTESGAGVDGPGMRFVF------------FVSGCQFRCLYCHNPDTW 58

Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
                R ++ E+ L +V      L    G                   V +  GEPL   
Sbjct: 59  KLHNGRQVSVEQALSEVAPYARFLKFAGG-------------------VTISGGEPLMQH 99

Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI-SLHAVSNDLRNI 253
           + V +         GL        L T GF+           V L +  +     +    
Sbjct: 100 EFVGELFHEIKQRFGL-----HTALDTQGFLHERVSDAWFDDVDLVMLDIKHSDPEKYQA 154

Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
           L       PL+  +D       L         YV++ G+ D   D   L      +   +
Sbjct: 155 LTGQ----PLQPTLDFALRLKRLRKKM--WIRYVLVPGLTDGDADIEKLADFAASLGDVV 208


>gi|227500740|ref|ZP_03930789.1| radical SAM domain protein [Anaerococcus tetradius ATCC 35098]
 gi|227217147|gb|EEI82500.1| radical SAM domain protein [Anaerococcus tetradius ATCC 35098]
          Length = 457

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 80/210 (38%), Gaps = 37/210 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C +CY     +  N   +EI                 +     ++    ++   I 
Sbjct: 104 CNLKCKYCYINQDDVSTNKEMDEI---------------TSKKCIDYLLKISKKEFLVIN 148

Query: 184 MMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIAR----VGEEIGVM 238
             G GEPL NFD +K ++           FS     ++T+G + +       +  ++ + 
Sbjct: 149 FFG-GEPLLNFDVIKSTIDYCHRLDRKFVFS-----VTTNGTLLDAKTMDFFLKNDVVIN 202

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           ++I  + + ND  +  +  N +     ++++       +N R        +  I D   D
Sbjct: 203 ISIDGNNIIND--SNRIYTNGQGSHSKILESVLKLRNETNLR-------AMSTITDQNLD 253

Query: 299 ALNLIKILKGIPAK-INLIP-FNPWPGCEY 326
            ++L K L  +    +N+ P +N   G ++
Sbjct: 254 LVSLFKYLDNLNFYEVNMSPAYNVLVGDKF 283


>gi|99034401|ref|ZP_01314414.1| hypothetical protein Wendoof_01000782 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|225630069|ref|YP_002726860.1| MiaB-like tRNA modifying enzyme [Wolbachia sp. wRi]
 gi|225592050|gb|ACN95069.1| MiaB-like tRNA modifying enzyme [Wolbachia sp. wRi]
          Length = 408

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 92/274 (33%), Gaps = 45/274 (16%)

Query: 90  LRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCY-TGTQKLVRNLTAEEI 147
           L    + +    ++E V I   + +    +  Q GC+ +C+FC  T  +   R++    I
Sbjct: 99  LLNDDKILVSDNQVEPVLINGFEDKSRAFIEIQNGCNHSCTFCSITEARGNNRSVPINSI 158

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207
           + Q+ +             ++     +      ++  M           V K +      
Sbjct: 159 IEQIRIFVENGYQEVVFTGVDITDFGTDLLGKPSLGSM--------IRRVLKDIPEL--- 207

Query: 208 MGLSFSKRRITLSTSGFVPNIARVGE------EIGVMLAISLHAVSNDLRNILVPINRKY 261
                  +R+ LS+         + +       +   L +SL + +N    IL  + R++
Sbjct: 208 -------KRLRLSSIDVAEVDDELMDLIANESRLMPHLHLSLQSGNN---LILKRMKRRH 257

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGI-NDSPRDALNLIKILKGIPAKINLIPFNP 320
             E +I+ C     L     I F   ++ G   ++     + + +LK    K N++  + 
Sbjct: 258 NREQVIEFCHKMKSLRP--NIAFGADIIAGFPTETDEMFQDTVDLLK----KTNIVYLHA 311

Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354
           +P  E   +    +               +R  R
Sbjct: 312 FPYSERKNTPAARMPQ---------VPENVRKER 336


>gi|327459536|gb|EGF05882.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK1]
          Length = 267

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 79/267 (29%), Gaps = 81/267 (30%)

Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           GC L C +C                    + T    R  + EEI+ +VL  R    +  G
Sbjct: 39  GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
              + G  I +                        K++  A+   G+        + T+ 
Sbjct: 97  GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132

Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           FV +  +  + I     +   L       H     ++N L+  N  Y             
Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY------- 326
             ++ + I     ++   NDS  DA     +   +    + L+PF+ +   +Y       
Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSINQVQLLPFHQFGENKYKLLGRKY 238

Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348
                     +D+  + +   +   + 
Sbjct: 239 AMKDVKALHPEDLFEYQDVFLKHDINC 265


>gi|323483059|ref|ZP_08088452.1| glycyl-radical enzyme activating protein family [Clostridium
           symbiosum WAL-14163]
 gi|323691495|ref|ZP_08105766.1| glycyl-radical enzyme activating protein family [Clostridium
           symbiosum WAL-14673]
 gi|323403599|gb|EGA95904.1| glycyl-radical enzyme activating protein family [Clostridium
           symbiosum WAL-14163]
 gi|323504468|gb|EGB20259.1| glycyl-radical enzyme activating protein family [Clostridium
           symbiosum WAL-14673]
          Length = 297

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 17/91 (18%)

Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL----- 327
             ++    +     ++  +N++ +DA   +K+LK      +NL+PF+ +   +Y      
Sbjct: 208 FAVTMKVPVVARIPVIPSVNNTIQDAKEFVKLLKEHRVDTVNLLPFHQFGEKKYEELQVP 267

Query: 328 ---------CSDQKDIVTFSECIKRSGYSSP 349
                        +D+  +    K +G +  
Sbjct: 268 YQLKDVKALRP--EDMTEYYNVFKNAGLNVS 296


>gi|16272144|ref|NP_438347.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           Rd KW20]
 gi|260580940|ref|ZP_05848764.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae
           RdAW]
 gi|1172447|sp|P43751|PFLA_HAEIN RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName:
           Full=Formate-C-acetyltransferase-activating enzyme 1;
           AltName: Full=PFL-activating enzyme 1
 gi|1573135|gb|AAC21848.1| pyruvate formate-lyase activating enzyme (act) [Haemophilus
           influenzae Rd KW20]
 gi|260092429|gb|EEW76368.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae
           RdAW]
          Length = 246

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 85/248 (34%), Gaps = 54/248 (21%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              ++ E+++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDLEGGKE--ISVEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +                 ++        G++       L T+GFV +   + +E+  
Sbjct: 87  FVRD---------------WFRACK----EEGIN-----TCLDTNGFVRHYDHIIDELLD 122

Query: 238 MLAISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           +  + L  +   ++ +   L+ +  K  LE        Y    N       YV++ G  D
Sbjct: 123 VTDLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQH-TWIRYVVVPGYTD 176

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSEC 340
           S  D   L + ++G+    K+ L+P++          G +Y         ++ +      
Sbjct: 177 SDHDVHLLGQFIEGMTNIEKVELLPYHRLGVHKWKTLGLDYELENVLPPTKESLEHIKTI 236

Query: 341 IKRSGYSS 348
           ++  G++ 
Sbjct: 237 LEGYGHTV 244


>gi|94263842|ref|ZP_01287647.1| Nitrogenase cofactor biosynthesis protein NifB [delta
           proteobacterium MLMS-1]
 gi|93455763|gb|EAT05934.1| Nitrogenase cofactor biosynthesis protein NifB [delta
           proteobacterium MLMS-1]
          Length = 424

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 22/164 (13%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
           P    +    +     +IS   + G G+P  N +   +++ + ++       +  + LS+
Sbjct: 60  PDQALVYLDRVLEKEPRISVAGIAGPGDPFANAEATMETVRLINEKH----PQMLLCLSS 115

Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL------------EMLI 267
           +G    P+I  +       + I+++AV   +   +    R   +               +
Sbjct: 116 NGMNIGPHIPELATLNVSHVTITINAVDPAVGEKIYGWVRDGKILYRGRQAAELLLGRQL 175

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
           +A R     +    +    +M+ GIND       +   ++ + A
Sbjct: 176 EAVRRL--KAAGITVKINCIMIPGINDH--HIPAVAAAMRDLEA 215


>gi|329116400|ref|ZP_08245117.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           parauberis NCFD 2020]
 gi|326906805|gb|EGE53719.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           parauberis NCFD 2020]
          Length = 263

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 71/241 (29%), Gaps = 47/241 (19%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E+                    E +       K   I
Sbjct: 35  GCKMRCQYCH--------NPDTWEM-----ETNKSQERTVKDVLNEALQYKHFWGKNGGI 81

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237
            + G GE +   D    +L   +++  L       TL T GF          ++   + V
Sbjct: 82  TVSG-GEAMLQID-FITAL--FTEAKALGI---HTTLDTCGFAYRATPEYHEKLDTLLAV 134

Query: 238 M-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             L +      ++ ++ +V       + +                +   +V++ G+ D  
Sbjct: 135 TDLILLDLKEIDEEQHKIVTRQPNKNILLFAQYLSE-----KGIPVWIRHVLVPGLTDID 189

Query: 297 RDALNLIKI---LKGIPAKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
                L      LK +  K  ++P++     ++                ++ +    E +
Sbjct: 190 DHLERLGAFVATLKNVD-KFEILPYHTMGEFKWRELGIPYQLEGVKPPTRERVQHAKEVM 248

Query: 342 K 342
           K
Sbjct: 249 K 249


>gi|94499363|ref|ZP_01305901.1| Molybdenum cofactor biosynthesis enzyme [Oceanobacter sp. RED65]
 gi|94428995|gb|EAT13967.1| Molybdenum cofactor biosynthesis enzyme [Oceanobacter sp. RED65]
          Length = 330

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 29/194 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C +C       +                    D    E IE +    V   +++I 
Sbjct: 23  CDFRCVYCMAEDMTFIP-----------------RKDVLSFEQIELISQAFVELGVTSIR 65

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           + G GEPL    N+   ++  +   GL+     IT++T+G    + ++   +       L
Sbjct: 66  LTG-GEPLI-RKNIVDLVAKLNQLDGLN----EITMTTNG--SQLPQLAHGLKQAGLSRL 117

Query: 244 HAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           +   + L+      + R   L+ ++         +   RI    V+L+G ND   + L+L
Sbjct: 118 NISLDSLKPERFKELTRTGDLQNVLVGIEA-AKQAGFDRIKLNAVILRGRND--DEILDL 174

Query: 303 IKILKGIPAKINLI 316
           +K ++     I+ I
Sbjct: 175 VKFVRDQGIDISFI 188


>gi|887429|emb|CAA90214.1| nifB [Pantoea agglomerans]
 gi|1480134|emb|CAA68008.1| nifB [Pantoea agglomerans]
          Length = 465

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 70/190 (36%), Gaps = 30/190 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C++C         N +   ++ ++LL        PG    +   + +   ++S + 
Sbjct: 51  CNLQCNYCNRKYD--CSNESRPGVVSELLL--------PGQAVAKARQVAAAIPQLSVVG 100

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241
           + G G+PL N     ++L +            ++ LST+G      + R+ +     + +
Sbjct: 101 IAGPGDPLANIGRTFQTLELLRQ----QLPDLKLCLSTNGLMLPDVVDRLVDIGVDHVTV 156

Query: 242 SLHAVSNDLRNILVPI----NRKYP--------LEMLIDACRHYPGLSNARRITFEYVML 289
           +++A+   +   +         +Y         +E   +  R          +    V++
Sbjct: 157 TMNALDPAVAEKIYAWLWYEGERYTGRMAADLLIERQAEGIRKLIEK--GVLVKINSVLI 214

Query: 290 KGINDSPRDA 299
            GIND    A
Sbjct: 215 PGINDQHMQA 224


>gi|332288503|ref|YP_004419355.1| pyruvate formate lyase-activating enzyme 1 [Gallibacterium anatis
           UMN179]
 gi|330431399|gb|AEC16458.1| pyruvate formate lyase-activating enzyme 1 [Gallibacterium anatis
           UMN179]
          Length = 246

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 90/275 (32%), Gaps = 55/275 (20%)

Query: 96  CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT-----QKLVRNLTAEEILLQ 150
            +G     E+    +       + +Q GC + C +C+              +T EE++ +
Sbjct: 3   AVGRIHSFESCGTVDGPGIRFILFTQ-GCLMRCKYCHNRDTWDLHSGKE--ITVEELMKE 59

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
           V+  R  +    G     G         I +                 ++        G+
Sbjct: 60  VVTYRHFMNASGGGVTASGGEAILQPEFIRD---------------WFRACK----KEGI 100

Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV---SNDLRNILVPINRKYPLEMLI 267
                   L T+GFV +  +V +E+  +  + L  +    + +   L+ ++ K  LE   
Sbjct: 101 -----HTCLDTNGFVRHYNQVIDELLDVTDLVLLDLKQLDDSIHQDLIGVSNKRTLE--- 152

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCE 325
                Y    N  +    YV++ G  D       L + +K +    K+ L+P++     +
Sbjct: 153 --FAKYLQKRNQ-KTWIRYVVVPGYTDDEHSVQLLGEFIKDMKNIEKVELLPYHQLGKHK 209

Query: 326 Y------------LCSDQKDIVTFSECIKRSGYSS 348
           +                ++ +      +++ G + 
Sbjct: 210 WETLGLKYELEDVKPPTKESLEKIKAQLEQFGLTV 244


>gi|325689506|gb|EGD31511.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK115]
          Length = 267

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 79/267 (29%), Gaps = 81/267 (30%)

Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           GC L C +C                    + T    R  + EEI+ +VL  R    +  G
Sbjct: 39  GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
              + G  I +                        K++  A+   G+        + T+ 
Sbjct: 97  GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132

Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           FV +  +  + I     +   L       H     ++N L+  N  Y             
Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY------- 326
             ++ + I     ++   NDS  DA     +   +    + L+PF+ +   +Y       
Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSINQVQLLPFHQFGENKYKLLGRKY 238

Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348
                     +D+  + +   +   + 
Sbjct: 239 AMENVKALHPEDLFEYQDVFLKHDINC 265


>gi|297617255|ref|YP_003702414.1| RNA modification enzyme, MiaB family [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145092|gb|ADI01849.1| RNA modification enzyme, MiaB family [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 447

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 82/215 (38%), Gaps = 27/215 (12%)

Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG-TQKLVRNLTAEEILLQVLLARSLL 158
              +E +        +  V+   GC+  CS+C    T+   R+    +I+ +V       
Sbjct: 140 GDIVEGLPARRTGGVSAFVNIMFGCNNFCSYCIVPFTRGRERSRKPSDIIDEV------- 192

Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMG-EPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
                 +D+    +  V     N+   G G EP  +F ++   L + ++  GL     RI
Sbjct: 193 ------KDLVQQGVKEVTLLGQNVNSYGKGLEPETDFASL---LELVNEIPGL----ERI 239

Query: 218 TLSTSGFVPNIARVGEEI--GVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYP 274
             +TS       R+   I     +   +HA      N ++  +NR Y  E  +D      
Sbjct: 240 RFTTSHPRDVSERLLSTIASCRKVCEHIHAPLQAGSNRILKAMNRGYTREYYLDLVHKMR 299

Query: 275 GLSNARRITFEYVM-LKGINDSP-RDALNLIKILK 307
            +     +T + ++   G +D    D ++++K ++
Sbjct: 300 EIVPGVAVTTDLIVGFPGESDRDFEDTIDMVKRIR 334


>gi|114567911|ref|YP_755065.1| radical SAM protein [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338846|gb|ABI69694.1| radical SAM domain protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 418

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 83/246 (33%), Gaps = 34/246 (13%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
              R    + S   C+  C  C +       +             ++ L   P  ++I  
Sbjct: 179 FYQRWEGGIPSMKACNAACIACISED-----HCGTAS-------PQNRLDFAPTVQEIVE 226

Query: 170 MVIPSVGRKISNIVMMGMG---EPLCNFDNVKKSLSIASDSMGLSFSKRRITLST-SGFV 225
           +    + R    I+  G G   EP  N   + +++    D          I ++T +G+ 
Sbjct: 227 VASEHLLRARDAIISFGQGCEGEPALNGKRLSQAIRRIRDLCAQG----TINMNTNAGYC 282

Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRITF 284
             +  + +     + +++ +   +  N +     + Y L  +  +  +     +  +I+ 
Sbjct: 283 EGVKLMTDAGMDSMRVTIFSAIEE--NYMTYHCPQDYSLADVEYSITY--AREHGVKISL 338

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKINLIPF-NPWPGCEYL------CSDQKDIVTF 337
             +   G  D   +   L++ ++     +++I F N     E+L       S    I  F
Sbjct: 339 NLLTFPGFTDRMEEVEALLEFVRKNQ--VDMIQFRNLNIDPEFLMRIFPGKSPVLGISNF 396

Query: 338 SECIKR 343
            + ++ 
Sbjct: 397 VKLLES 402


>gi|52424458|ref|YP_087595.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306510|gb|AAU37010.1| PflA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 246

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 83/246 (33%), Gaps = 48/246 (19%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              ++ EE++ +V+  R  +    G              
Sbjct: 29  GCLMRCKYCHNRDTWDLHGGKE--ISVEELMKEVVTYRHFMNASGGG------------- 73

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
                V    GE +   + V+     A    G++       L T+GFV +   + +E+  
Sbjct: 74  -----VTASGGEAILQAEFVRDWFR-ACHKEGIN-----TCLDTNGFVRHHDHIIDELID 122

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
              + L     ++   +       P + +++  ++    +  +R    +V++ G  DS  
Sbjct: 123 DTDLVLLD-LKEMNERVHESLIGVPNKRVLEFAKYLADRN--QRTWIRHVVVPGYTDSDE 179

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343
           D   L   +K +    K+ L+P++     ++                ++ +      +  
Sbjct: 180 DLHMLGNFIKDMKNIEKVELLPYHRLGAHKWEVLGDKYELEDVKPPTKELMEHVKGLLAG 239

Query: 344 SGYSSP 349
            G +  
Sbjct: 240 YGLNVT 245


>gi|170290152|ref|YP_001736968.1| pyruvate-formate lyase-activating enzyme [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174232|gb|ACB07285.1| Pyruvate-formate lyase-activating enzyme [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 360

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 40/232 (17%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+  C +C              EI        S        E     +I    R+  + 
Sbjct: 80  GCNFYCPWCQN-----------HEI--------SFRWPPEVPEVKPSYLIDLAKRRGDHG 120

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLA 240
           +   + EP  NFD V ++  +A D      S     + T+G+  +  +  +        +
Sbjct: 121 ISASLNEPATNFDFVLEASKLAKD------SGLYSMVVTNGYFTLEALRELLNAGTDGYS 174

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD-- 298
           I +          ++P       +++    R          +   Y+++ G ND      
Sbjct: 175 IDIKGCPEMAERKILPHVNH---DIIFRNAREVIEE--GGHVEVVYLVVTGANDFESCFN 229

Query: 299 --ALNLIKILKGIPAKINLI-PFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347
                 + +   +P  IN   P N W   E   +D K ++ F E   R G +
Sbjct: 230 WIVDKHLSLGPDVPLHINRYFPANRWREPE---TDLKKLLNFRERAMREGIN 278


>gi|111226135|ref|YP_716929.1| FeMo cofactor biosynthesis protein nifB [Frankia alni ACN14a]
 gi|111153667|emb|CAJ65426.1| FeMo cofactor biosynthesis protein nifB [Frankia alni ACN14a]
          Length = 470

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 86/246 (34%), Gaps = 36/246 (14%)

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           V+   GC++ C+FC        R         +     +     P     +  ++ S  +
Sbjct: 29  VAVAPGCNIQCNFC-------NRKFDCA---NESRPGVTSTLLTPEDALAKVKLVASEIK 78

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEI 235
           ++S + + G G+PL N     +++ + +          ++ LST+G      + R+ +  
Sbjct: 79  QMSVLGIAGPGDPLANPKPTFRTMELVARD----CPDIKLCLSTNGLRLPEFVDRIVDLN 134

Query: 236 GVMLAISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPGL------SNARRITFE 285
              + I+++ +  ++   + P      ++Y                              
Sbjct: 135 VDHVTITINMIDPEVGERIYPWVAWRGKRYTGREASKILSEQQLAGLAALTERKILCKVN 194

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPG-------CEYLCSDQKDIVTF 337
            VM+ GIND     + + + +KG+ A + N++P    P                +++   
Sbjct: 195 SVMIPGIND--EHLVEVSRTVKGLGAFLHNVMPLVSAPEHGTVFGLTGQRGPTPQELKAL 252

Query: 338 SECIKR 343
            +  ++
Sbjct: 253 QDRCEQ 258


>gi|330834353|ref|YP_004409081.1| tRNA-modifying enzyme [Metallosphaera cuprina Ar-4]
 gi|329566492|gb|AEB94597.1| tRNA-modifying enzyme [Metallosphaera cuprina Ar-4]
          Length = 279

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 9/160 (5%)

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
           I+ + +                         K S++ +   GEP   ++ + + +     
Sbjct: 24  IVERSIEEHKRSVSGYLGRTGVSKDKALEAMKPSHVAISLTGEPTL-YERLGELIRE-YH 81

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
             G+        L TSG  P++    EE    L +SL A       ++          ++
Sbjct: 82  KRGI-----TTFLVTSGVRPDVLASLEEEPTQLFVSLQAPDEQKHKLINRPVVGNSWNLV 136

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
           +      P  S          M+K +N S  DA    +++
Sbjct: 137 MKTLEILPSFS--SPTVIRMTMMKDVNMSEEDAKEFSRLM 174


>gi|317132608|ref|YP_004091922.1| pyruvate formate-lyase activating enzyme [Ethanoligenens harbinense
           YUAN-3]
 gi|315470587|gb|ADU27191.1| pyruvate formate-lyase activating enzyme [Ethanoligenens harbinense
           YUAN-3]
          Length = 258

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 69/249 (27%), Gaps = 59/249 (23%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C++C+                    LA             + +       K   +
Sbjct: 43  GCPLRCAYCHNPD---------------TWLADGGEETTAQALFEKILRYRPYFGKTGGV 87

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-VPNIAR--VGEEIGVML 239
            + G GEPL  +  V    S+  +      +     L TSG   P  AR  +     V+ 
Sbjct: 88  TVSG-GEPLLQWRFVAGLFSLLRE------AGVHTALDTSGVGDPAGARAVLAHTSLVL- 139

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
              L   + +             L  ++   R    L     +   +V++ G+ D     
Sbjct: 140 -CDLKFTTEEA----YARYCGGSLRAVLAFLRQTAEL--GVPLWLRHVVVPGLTDGETHI 192

Query: 300 LNLIKILKGIPAKINL--------------------IPFNPWPGCEYLCSDQKDIVTFSE 339
             L  + +  P   NL                    IPF   P   Y    ++ I     
Sbjct: 193 RALAALARQFP---NLERLELLPFQILCQTKYDALGIPF---PLQGYPPCPEQTIRALYR 246

Query: 340 CIKRSGYSS 348
            ++     +
Sbjct: 247 VLEEEHIPT 255


>gi|116250431|ref|YP_766269.1| hypothetical protein RL0659 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255079|emb|CAK06153.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 372

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 16/141 (11%)

Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           R+ E     L + L AV+ ++R  ++P   +  +   + +     G+    +++  Y++ 
Sbjct: 224 RMKEAGVDALGMHLEAVTPEVRARIMPGKAQVSIAKYMASFSAAVGVFGRGQVS-TYIL- 281

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSECIK 342
            G+ DS    L + + L  +     ++PF P  G             + +     S  + 
Sbjct: 282 AGLGDSREAILEICEKLVALGVYPFVVPFVPISGTPLESHPAPSPDFMHSILGPLSRMLV 341

Query: 343 RSGYSSPIRTPRGLDILAACG 363
            SG  +        DI A CG
Sbjct: 342 ASGLKAV-------DIKAGCG 355


>gi|325168572|ref|YP_004280362.1| radical SAM protein [Agrobacterium sp. H13-3]
 gi|325064295|gb|ADY67984.1| Radical SAM protein [Agrobacterium sp. H13-3]
          Length = 372

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
            R+       L + L AV+ ++R+ ++P     PLE  + +      +    +++  Y++
Sbjct: 222 ERMKNAGADALGMHLEAVTPEVRDRIMPGKASVPLEKYLSSFEAAVKVFGRGQVS-TYIL 280

Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL--CSDQKDIVT-----FSECI 341
             G+ D+    L++   L  +     ++PF P  G       + + D +       S+ I
Sbjct: 281 -AGLGDTREAILDMSTRLVAMGVYPFVVPFVPISGTPLESHPAPKSDFMASILAPLSQII 339

Query: 342 KRSGYSSPIRTPRGLDILAACG 363
              G  +        DI A CG
Sbjct: 340 IDGGLKA-------SDIKAGCG 354


>gi|326202609|ref|ZP_08192477.1| pyruvate formate-lyase activating enzyme [Clostridium papyrosolvens
           DSM 2782]
 gi|325987193|gb|EGD48021.1| pyruvate formate-lyase activating enzyme [Clostridium papyrosolvens
           DSM 2782]
          Length = 240

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 80/235 (34%), Gaps = 44/235 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+       R+  + E   ++   + ++ +    ++               I
Sbjct: 29  GCPLRCKYCH------NRDAWSSE-GAKLYTPQEVMKELLKYKNFIEASHGG-------I 74

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--LA 240
            + G GEPL   D V++         G+        + TSG+V N+  V E +     + 
Sbjct: 75  TVSG-GEPLIQQDFVRELFK-LCREAGI-----HTAVDTSGYV-NVEDVKETLEYTDLVL 126

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + L   +      L  +         I     Y G    + +   YV++ G  D+  D L
Sbjct: 127 LDLKQANAKKHLDLTGVEN-----ERIKLFTSYLG-EIGKPVWIRYVLVPGYTDNEEDLL 180

Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFSECI 341
                LKG     KI ++P++     ++                Q+++      +
Sbjct: 181 AAYNYLKGFKNIEKIEVLPYHSMGKVKWEKLNVEYPLEGVPSPSQEEVDRAKNIL 235


>gi|291288384|ref|YP_003505200.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885544|gb|ADD69244.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 315

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 21/187 (11%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C +C           TAE         R    +            P +   +  + 
Sbjct: 34  CTLNCIYCEV---GRTTECTAE---------RRRFENPDDILAEFRENYPHLKDDLDVVT 81

Query: 184 MMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           + G GEP  N D   + K L   S+          +T ST     N+     E+ V +  
Sbjct: 82  ITGAGEPTLNIDMGYIIKGLKEISE-----HPVAVLTNSTLLTDKNVQAELMELDV-VVP 135

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SL AVS +    +    R   ++ + +A   +       ++  E ++ +GIND+  +   
Sbjct: 136 SLDAVSEEAYRRVCAPERSLDIKAINEALVEF-SHKFQGKLLVEVLLCEGINDNMEELKK 194

Query: 302 LIKILKG 308
           +  I+K 
Sbjct: 195 IAGIIKR 201


>gi|91228408|ref|ZP_01262334.1| hypothetical protein V12G01_15225 [Vibrio alginolyticus 12G01]
 gi|254230273|ref|ZP_04923663.1| lysine 2;3-aminomutase [Vibrio sp. Ex25]
 gi|262393005|ref|YP_003284859.1| lysine 2,3-aminomutase [Vibrio sp. Ex25]
 gi|269966836|ref|ZP_06180909.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91188049|gb|EAS74355.1| hypothetical protein V12G01_15225 [Vibrio alginolyticus 12G01]
 gi|151937210|gb|EDN56078.1| lysine 2;3-aminomutase [Vibrio sp. Ex25]
 gi|262336599|gb|ACY50394.1| lysine 2,3-aminomutase [Vibrio sp. Ex25]
 gi|269828503|gb|EEZ82764.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 340

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 66/221 (29%), Gaps = 46/221 (20%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
                   E+  +    ++R  + V    GC++ C +C        R+   +E       
Sbjct: 92  DPLEEQDNEVPGLLHKYRNRALMIVKG--GCAVNCRYC------FRRHFPYQE------- 136

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                 +  G +     +     +   N V+   G+PL   D     +    +       
Sbjct: 137 ------NKSGKQAWTKCLEYMAQQPELNEVIFSGGDPLMAKD---DEIHWLLE------- 180

Query: 214 KRRITLSTSGFVPNIARVGEE------IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
                      +P+I R+         I   +   L  +    R  ++ +        + 
Sbjct: 181 -------HIAHIPHIKRLRIHSRLPVVIPARVTDELCQLLQASRLQIILVTHINHANEIN 233

Query: 268 DACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKIL 306
           D             +T   + V+LKG+NDS    + L + L
Sbjct: 234 DEFAEQMFKLKRAGVTLLNQGVLLKGVNDSVEAQVALSEAL 274


>gi|325697841|gb|EGD39725.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK160]
          Length = 258

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 79/267 (29%), Gaps = 81/267 (30%)

Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           GC L C +C                    + T    R  + EEI+ +VL  R    +  G
Sbjct: 30  GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 87

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
              + G  I +                        K++   +   G+        + T+ 
Sbjct: 88  GLTLSGGEIFAQFE-------------------FAKAILKVAKEKGI-----HTAIETTA 123

Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           FV +  +  + I     +   L       H     ++N L+  N  Y             
Sbjct: 124 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 169

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY------- 326
             ++ + I     ++   NDS  DA     +   +   ++ L+PF+ +   +Y       
Sbjct: 170 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSIDQVQLLPFHQFGENKYKLLGRKY 229

Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348
                     +D+  + +   +   + 
Sbjct: 230 AMKDVKALHPEDLFEYQDVFLKHDINC 256


>gi|324990394|gb|EGC22332.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK353]
 gi|327459135|gb|EGF05483.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK1057]
          Length = 267

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 80/267 (29%), Gaps = 81/267 (30%)

Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           GC L C +C                    + T    R  + EEI+ +VL  R    +  G
Sbjct: 39  GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
              + G  I +                        K++  A+   G+        + T+ 
Sbjct: 97  GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132

Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           FV +  +  + I     +   L       H     ++N L+  N  Y             
Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY------- 326
             ++ + I     ++   NDS  DA     +   +   ++ L+PF+ +   +Y       
Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSIDQVQLLPFHQFGENKYKLLGRKY 238

Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348
                     +D+  + +   +   + 
Sbjct: 239 AMEDVKALHPEDLFEYQDVFLKHDINC 265


>gi|284051882|ref|ZP_06382092.1| radical SAM domain protein [Arthrospira platensis str. Paraca]
          Length = 347

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 20/204 (9%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           I +     + V + + CSL+C  C    Q   R         Q+ L +            
Sbjct: 81  IRKFHLNKIQVETSLSCSLSCWGCSRIKQVRQRR-------GQLFLDKKQFQTLIVSCAE 133

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
           +   I         +   G GEPL N     + + I S+         + TL+T+G    
Sbjct: 134 DNYNIDW-------VEYCGQGEPL-NHPEFSQFVKIVSEF----LPNTQQTLTTNGNNNF 181

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
              VGEE    + +S    S +   I             +         +N   +T++Y+
Sbjct: 182 NLSVGEETLHRIIVSCDGASQEKYEIYRRGGNFEKCIRFMKDAVANKNANNHPHVTWKYI 241

Query: 288 MLKGINDSPRDALNLIKILKGIPA 311
           +    NDS  +     +I + I  
Sbjct: 242 LFDH-NDSDEEIAKANEIAQNIGV 264


>gi|145633596|ref|ZP_01789324.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           3655]
 gi|229845160|ref|ZP_04465294.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           6P18H1]
 gi|229847286|ref|ZP_04467389.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           7P49H1]
 gi|144985802|gb|EDJ92416.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           3655]
 gi|229809829|gb|EEP45552.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           7P49H1]
 gi|229811871|gb|EEP47566.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           6P18H1]
          Length = 246

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 84/248 (33%), Gaps = 54/248 (21%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              ++ E+++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDLEGGKE--ISVEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +                 ++        G++       L T+GFV +   + +E+  
Sbjct: 87  FVRD---------------WFRACK----EEGIN-----TCLDTNGFVRHYNHIIDELLD 122

Query: 238 MLAISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           +  + L  +   ++ +   L+ +  K  LE        Y    N       YV++ G  D
Sbjct: 123 VTDLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQH-TWIRYVVVPGYTD 176

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
           S  D   L + ++G+    K+ L+P++     ++                ++ +      
Sbjct: 177 SDHDVHLLGQFIEGMANIEKVELLPYHRLGAHKWKTLGLDYELEDVLPPTKESLEHIKTI 236

Query: 341 IKRSGYSS 348
           ++  G++ 
Sbjct: 237 LEGYGHTV 244


>gi|323701651|ref|ZP_08113323.1| glycyl-radical enzyme activating protein family [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533424|gb|EGB23291.1| glycyl-radical enzyme activating protein family [Desulfotomaculum
           nigrificans DSM 574]
          Length = 311

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 19/93 (20%)

Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN--LIPFNP 320
           L   I  C+ YP       I     ++ G ND+  D   +   +KGIP  +   L+P++ 
Sbjct: 217 LSNFIKLCQLYP----KTPIIVRTPVVPGFNDTEEDIFAIANFIKGIP-HVTYELLPYHR 271

Query: 321 WPGCEY------------LCSDQKDIVTFSECI 341
           +   +Y                ++ +      +
Sbjct: 272 FGESKYTYLGKQYLLTGVEKPAEERMKALRSIV 304


>gi|170746695|ref|YP_001752955.1| radical SAM domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653217|gb|ACB22272.1| Radical SAM domain protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 367

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 20/150 (13%)

Query: 225 VPNIARVGEEIGV----MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
            P+  R  E +       L + L AV+ ++R  ++P     PLE   DA      +    
Sbjct: 209 PPDDDRWFERMRASGVDALGMHLEAVTPEVRARIMPGKASVPLERYFDAFAAAVPVFGRG 268

Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT- 336
           +++  Y++  G+ D+P   L     L G+     ++PF P  G             +   
Sbjct: 269 QVS-TYIL-AGLGDAPDAILATADRLIGMGVYPFVVPFVPISGTPLESHPAPGPDFMHAV 326

Query: 337 ---FSECIKRSGYSSPIRTPRGLDILAACG 363
               +E + R+         R  DI A CG
Sbjct: 327 LKPLAEMLGRADL-------RSADIKAGCG 349


>gi|14520767|ref|NP_126242.1| molybdenum cofactor biosynthesis protein a related [Pyrococcus
           abyssi GE5]
 gi|5457983|emb|CAB49473.1| mooA-like molybdenum cofactor biosynthesis protein A related
           [Pyrococcus abyssi GE5]
          Length = 419

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 86/247 (34%), Gaps = 35/247 (14%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           + ++    + V    GC++ C FC        R    + ++    L +    D+   E  
Sbjct: 109 LIDRGTNLIQVRGSTGCNMRCIFCSVDEGPYSRTRKLDFVVDIDYLLKWF--DWVAKEKG 166

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-- 225
           +G+             +   GEPL  +  + + +    +   +S     I++ ++G +  
Sbjct: 167 KGLEAH----------LDAQGEPLL-YPFIVELVQALREHPHVSV----ISMQSNGVLLN 211

Query: 226 -PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
              +  + E     + +S+H++  +   +L+ I + Y L  +++             +  
Sbjct: 212 DKLVEELAEAGLDRVNLSIHSLDPEKAKMLMGI-KDYDLNHVLEMAEALVNA--GIDVLI 268

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVT 336
             V++ G+ND   +A   I+  + I A          N IP+                  
Sbjct: 269 APVIMFGVND--DEAEAFIEFARRIGAGKRWPALGFQNYIPYKFGRNPVIAKPVP--FKE 324

Query: 337 FSECIKR 343
           F   ++ 
Sbjct: 325 FYRWLRE 331


>gi|227824374|ref|ZP_03989206.1| radical SAM family protein [Acidaminococcus sp. D21]
 gi|226904873|gb|EEH90791.1| radical SAM family protein [Acidaminococcus sp. D21]
          Length = 468

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 21/113 (18%)

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           LL  P   +      E +        +LC+     C+L C +C+  T     +       
Sbjct: 72  LLFSPDFSVPDTFAEEPIL------KSLCLHVAHDCNLRCGYCFADTGDFGGH------- 118

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
                 R+L+      + IE  +  S  R    + + G GEPL N   V K +
Sbjct: 119 ------RALMSKEVAQKAIEFAIKGSKKRHNLELDLFG-GEPLMNMP-VVKFI 163


>gi|170754837|ref|YP_001782699.1| radical SAM domain-containing protein [Clostridium botulinum B1
           str. Okra]
 gi|169120049|gb|ACA43885.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra]
          Length = 455

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 21/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+    +                 R L+    G + I+ ++  S
Sbjct: 96  ALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPEVGKKAIDFVIEKS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             RK   + + G GEPL  F  +K+ +  A +         R T++T+G + N   +   
Sbjct: 143 GPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEEKHNKTIRFTMTTNGTLLNQEIMEYL 201

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
                 ++L+I      ND   + V  +  Y  + ++   +    + N  +  +      
Sbjct: 202 DKNMGNIVLSIDGRKEINDNVRVRVDGSGSY--DSILPKIKKMIEMRNKTKQYYARGTFT 259

Query: 291 GIN-DSPRDALNLIK 304
             N D   D +++  
Sbjct: 260 RENLDFFEDVMHMAN 274


>gi|91784391|ref|YP_559597.1| hypothetical protein Bxe_A1409 [Burkholderia xenovorans LB400]
 gi|91688345|gb|ABE31545.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 356

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 16/133 (12%)

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            L + L  V+ +LR  ++P     PL   ++A R    +    +++  Y++  G+ DS  
Sbjct: 220 TLGMHLEVVTPELRERIMPGKASVPLSRYMEAFRSAVAVFGRGQVS-TYIL-AGLGDSAE 277

Query: 298 DA----LNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPI 350
                   LI++  G+   +  +PF P  G           + + +  + +     ++ +
Sbjct: 278 AILTMSRELIEL--GVYPFV--VPFVPISGTPLEDHPAPTPEFMKSVLQPLGGMLNAAAM 333

Query: 351 RTPRGLDILAACG 363
           R+    DI A CG
Sbjct: 334 RSS---DIKAGCG 343


>gi|327472949|gb|EGF18376.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK408]
          Length = 267

 Score = 41.4 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 80/267 (29%), Gaps = 81/267 (30%)

Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           GC L C +C                    + T    R  + EEI+ +VL  R    +  G
Sbjct: 39  GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
              + G  I +                        K++  A+   G+        + T+ 
Sbjct: 97  GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132

Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           FV +  +  + I     +   L       H     ++N L+  N  Y             
Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY------- 326
             ++ + I     ++   NDS  DA     +   +   ++ L+PF+ +   +Y       
Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSIDQVQLLPFHQFGENKYKLLGRKY 238

Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348
                     +D+  + +   +   + 
Sbjct: 239 AMEDVKALHPEDLFEYQDVFLKHDINC 265


>gi|238018686|ref|ZP_04599112.1| hypothetical protein VEIDISOL_00530 [Veillonella dispar ATCC 17748]
 gi|237865157|gb|EEP66447.1| hypothetical protein VEIDISOL_00530 [Veillonella dispar ATCC 17748]
          Length = 575

 Score = 41.4 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 74/266 (27%), Gaps = 47/266 (17%)

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDG-------------TRKWLLRFPARCIGGPVEIETV 106
           +R  L     +  P +     S DG             T K   R       G   +   
Sbjct: 186 LRQ-LADVTGVYVPSLYVPIYSEDGAFKGYDIADGVPKTIK---RHFEMLTSGGETVVAT 241

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
               +      +    GC   C FC  G    V  +   EIL + +     LG   G   
Sbjct: 242 NY-TEFGAMYIIEVARGCGRHCRFCMAGYCFRVPRVRPLEILKEGVDRAEKLGKKVGLMG 300

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
                 P V               L N+        I S  M  S +  R    T   V 
Sbjct: 301 AAISDYPEVDE-------------LVNY--------IRSKDMRYSCASLRADSLTQAVVD 339

Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
               + +     + I+    S  LR ++   N+    E  +         S  + +   Y
Sbjct: 340 G---LADSGQKTITIAPETGSERLRRVI---NKGIS-EEHLQNAATLSAKSGIQHMRL-Y 391

Query: 287 VMLKGINDSPRDALNLIKILKGIPAK 312
           +M+    ++  D   ++ + +   A 
Sbjct: 392 IMIGLPTETDEDIEAIVGLAERTQAH 417


>gi|227503005|ref|ZP_03933054.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
           accolens ATCC 49725]
 gi|306836762|ref|ZP_07469723.1| pyruvate formate-lyase activating enzyme [Corynebacterium accolens
           ATCC 49726]
 gi|227076066|gb|EEI14029.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium
           accolens ATCC 49725]
 gi|304567349|gb|EFM42953.1| pyruvate formate-lyase activating enzyme [Corynebacterium accolens
           ATCC 49726]
          Length = 289

 Score = 41.4 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 100/306 (32%), Gaps = 77/306 (25%)

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            I  PE+++ + + D             +     +  V  P  +R T+ +S   GC L C
Sbjct: 34  EITRPELMEARRTGD----------IALVHSWELVTAVDGP-GTRMTMFMS---GCPLRC 79

Query: 129 SFCYTGTQKLVRNLTAEEI----LLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
            +C+        N    E+    L +V  + + +    P  +   G +  S G  +  I 
Sbjct: 80  QYCH--------NPDTMEMKTGTLERVDDVVKRIKRYKPIFQASGGGLTISGGEPLFQIA 131

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
                        V K +       G+       T+ TSGF+ +  R  +   + L +  
Sbjct: 132 FTR---------RVLKEV----HDAGI-----HTTIDTSGFLGSRLRDEDLDNIDLVLLD 173

Query: 244 HAVSND------LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
               ++       R  L P          +D       +   + +   +V++ G+ DS  
Sbjct: 174 VKSGDEETYQRVTRRQLQP---------TLDFGDRLNAI--GKPVWIRFVVVPGLTDSAE 222

Query: 298 DALNLIKILKGIPA---KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIK 342
           +  N+  I+    +   ++ ++PF+     ++                 +D+    +  +
Sbjct: 223 NVENVASIVARWKSNVERVEVLPFHNMGKDKWEGLDMTYHLADTKPPKPEDVEKVRDVFR 282

Query: 343 RSGYSS 348
             G   
Sbjct: 283 AKGLEV 288


>gi|326391547|ref|ZP_08213079.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325992428|gb|EGD50888.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 453

 Score = 41.4 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 76/233 (32%), Gaps = 60/233 (25%)

Query: 123 GCSLTCSFC-YTGTQKLVR----NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
            C+L C +C  T  Q   R    N T ++I+    + R +                    
Sbjct: 100 DCNLKCEYCIETEIQGFRRENMTNDTTKDIIN--WIQRKID---------------EKSY 142

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
           +I  +V  G GEPL N D + +  +   +       K+ +T S S        + +    
Sbjct: 143 RILELVFYG-GEPLLNKDPIFQICNYFYNETL----KKNLTFSFSIITNGTIELSD---- 193

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
                     ++L   L   N K+ +++ ID  ++        +         G      
Sbjct: 194 ----------DEL-KTLTKNNLKF-IQITIDGSKYIHDKRRPYK--------NGEGSFSD 233

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
              NL K L+     +     N         ++ +DI    + +K  G ++ +
Sbjct: 234 IIKNLKKFLEFTKVAV---RINV------DSANMEDIDNLLKYLKEEGLNNRV 277


>gi|169838443|ref|ZP_02871631.1| hypothetical protein cdivTM_15306 [candidate division TM7
           single-cell isolate TM7a]
          Length = 42

 Score = 41.4 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 174 SVGRKISNIVMMGMGEPLCNFDNV 197
             G K+ N+V MGMGEP  N+D V
Sbjct: 19  KRGEKLGNVVYMGMGEPFLNYDAV 42


>gi|324992219|gb|EGC24141.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK405]
 gi|324994310|gb|EGC26224.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK678]
 gi|327468653|gb|EGF14132.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK330]
 gi|327490737|gb|EGF22518.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK1058]
 gi|332364834|gb|EGJ42603.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis
           SK1059]
          Length = 258

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 80/267 (29%), Gaps = 81/267 (30%)

Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           GC L C +C                    + T    R  + EEI+ +VL  R    +  G
Sbjct: 30  GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 87

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
              + G  I +                        K++  A+   G+        + T+ 
Sbjct: 88  GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 123

Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           FV +  +  + I     +   L       H     ++N L+  N  Y             
Sbjct: 124 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 169

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY------- 326
             ++ + I     ++   NDS  DA     +   +   ++ L+PF+ +   +Y       
Sbjct: 170 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSIDQVQLLPFHQFGENKYKLLGRKY 229

Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348
                     +D+  + +   +   + 
Sbjct: 230 AMEDVKALHPEDLFEYQDVFLKHDINC 256


>gi|323353534|ref|ZP_08088067.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
           VMC66]
 gi|322121480|gb|EFX93243.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
           VMC66]
          Length = 267

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 80/267 (29%), Gaps = 81/267 (30%)

Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           GC L C +C                    + T    R  + EEI+ +VL  R    +  G
Sbjct: 39  GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
              + G  I +                        K++  A+   G+        + T+ 
Sbjct: 97  GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132

Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           FV +  +  + I     +   L       H     ++N L+  N  Y             
Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY------- 326
             ++ + I     ++   NDS  DA     +   +   ++ L+PF+ +   +Y       
Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSIDQVQLLPFHQFGENKYKLLGRKY 238

Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348
                     +D+  + +   +   + 
Sbjct: 239 AMEDVKALHPEDLFEYQDVFLKHDINC 265


>gi|62751068|dbj|BAD95760.1| NifB [Heliobacterium chlorum]
          Length = 277

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 83/248 (33%), Gaps = 33/248 (13%)

Query: 109 PEKSRGTLCVSSQV--GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
           P     +  +   V  GC++ C +C         N +   +  +V+     L        
Sbjct: 23  PHGHGKSGRIHLPVAPGCNIACGYCVRKFD--CANESRPGVTSRVITPEQALW------R 74

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
           +E  +   +G  +  I + G GEPL N      +L +  +            +S++G + 
Sbjct: 75  VEQALASDIGPYLQVIGIAGPGEPLAN-PATYTTLELIQEHHPHLIR----CISSNGLLL 129

Query: 227 NIARVGEEIGV---MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---------- 273
              R+ + +      + ++L+ +   +   +    R    ++  +               
Sbjct: 130 P-ERLSDLLRCGVSHVTVTLNTLDPAVGAQIYRYVRWQGRKLTGEMGAQILLEQQLLGIE 188

Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPF-NPWPGCEYLCSDQ 331
                   +    V++ G+ND  +    L   ++   A I NL+P  N     +      
Sbjct: 189 LAAQAGMTVKVNTVVIPGLND--KHLEELAWEVRARGASILNLMPLINQGIFADVQPPTP 246

Query: 332 KDIVTFSE 339
           +++ T+  
Sbjct: 247 EEMHTYRR 254


>gi|212223647|ref|YP_002306883.1| Hypothetical molybdenum cofactor biosynthesis protein A
           [Thermococcus onnurineus NA1]
 gi|212008604|gb|ACJ15986.1| Hypothetical molybdenum cofactor biosynthesis protein A
           [Thermococcus onnurineus NA1]
          Length = 419

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 80/223 (35%), Gaps = 35/223 (15%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           + ++    + +    GC+L+C FC        R       L  V+    L+  F     I
Sbjct: 109 LIDRGTNLIQIRGVSGCNLSCIFCSVDEGPYSR----TRKLDYVVDIDYLIKWFDDVAQI 164

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNV--KKSLSIASDSMGLSFSKRRITLSTSGFV 225
           +G  + +         + G GEPL     V   ++L           S +    S    +
Sbjct: 165 KGKGLEAH--------LDGQGEPLLYPFRVELVQALR--EHPNVRVISMQ----SNGTLL 210

Query: 226 PN--IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
            +  +  + E     + +SLH++  +   +L+   + Y L+ ++D             + 
Sbjct: 211 NDRLVEELAEAGLDRVNLSLHSLDPEKAKMLMGR-KDYDLQHVLDMAEALVNA--GVDVL 267

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPA--------KINLIPF 318
              V++ GIND+   A   I+  + I A          N IP+
Sbjct: 268 IAPVIIFGINDNE--AEAFIEFARRIGAGKRWPALGFQNYIPY 308


>gi|163802718|ref|ZP_02196608.1| chaperonin GroEL [Vibrio sp. AND4]
 gi|159173425|gb|EDP58247.1| chaperonin GroEL [Vibrio sp. AND4]
          Length = 340

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 58/210 (27%), Gaps = 42/210 (20%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
                    I  +    K+R  + V    GC++ C +C++       N            
Sbjct: 92  DPLDEQGNAIPGLLHKYKNRALMIVKG--GCAINCRYCFSRHFPYQDN------------ 137

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSIASDSMG 209
                         +  +         N V++  G+PL   D+    + +++        
Sbjct: 138 -------KGSKSVWQTSLDYVSQHPEINEVILSGGDPLMAKDSEIEWLIQAIEHIPHIKR 190

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           L     R+ +               I   +   L  +    R  +V +      + +   
Sbjct: 191 LRI-HSRLPV--------------VIPARITDQLSHLLQASRLQIVLVTHINHADEINAE 235

Query: 270 CRHYPGLSNARRITF--EYVMLKGINDSPR 297
                       +T   + V+LK +NDS  
Sbjct: 236 LTAKMAKLKQVGVTLLNQAVLLKDVNDSVE 265


>gi|319937834|ref|ZP_08012236.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1]
 gi|319807064|gb|EFW03680.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1]
          Length = 298

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 28/154 (18%)

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-PNIARVGEEIGVMLAI 241
           V +  GE +   D VK  ++   D          + + T+G++ P I +    +  +L  
Sbjct: 129 VTISGGEGMSQPDFVKALVNKLKDE------GIHVAIETTGYIQPQIFQDLALLFDLLLF 182

Query: 242 SLHAVSND-------LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
            +    ++       + N L+  N ++ ++  I+     P             ++   N 
Sbjct: 183 DVKHYDSEQHFLGTAVHNELIIQNLQWAIDQGIEVLPRIP-------------VIPDFNA 229

Query: 295 SPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL 327
           S  DA  L K+L+ + AK + L+PF+ +   +Y 
Sbjct: 230 SLEDAKGLAKLLQSVGAKRVQLLPFHQFGEKKYE 263


>gi|24378975|ref|NP_720930.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
           mutans UA159]
 gi|24376865|gb|AAN58236.1|AE014895_1 putative pyruvate formate-lyase activating enzyme [Streptococcus
           mutans UA159]
          Length = 258

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 79/211 (37%), Gaps = 23/211 (10%)

Query: 123 GCSLTCSFCYT-GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKI 179
           GC L C +C    +QK       E++L        ++G+    EDI   V   +    + 
Sbjct: 30  GCPLRCPWCSNPESQKYK----PEQMLDAETKLPMIIGEEKTVEDIISEVKKDIDFYEES 85

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV-- 237
              + +  GE    F+   K++   +   GL        + T+ F  +  +  + I    
Sbjct: 86  GGGLTLSGGEIFAQFE-FAKAILKCAKEEGL-----HTAIETTAFAEH-EKFTDLIQYVD 138

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            +   L   +      +  +N  + ++ +      +   ++ + I     ++   N+S  
Sbjct: 139 FIYTDLKHYNTIRHRKVTGVNNNFIIQNI------HYAFTHKKTIVLRIPVIPDFNNSLD 192

Query: 298 DALNLIKILKGIPA-KINLIPFNPWPGCEYL 327
           DA +  K+   I   K+ L+PF+ +   +Y 
Sbjct: 193 DAEHFAKLFNDIQVDKVQLLPFHQFGENKYK 223


>gi|307823808|ref|ZP_07654036.1| nitrogenase cofactor biosynthesis protein NifB [Methylobacter
           tundripaludum SV96]
 gi|307735102|gb|EFO05951.1| nitrogenase cofactor biosynthesis protein NifB [Methylobacter
           tundripaludum SV96]
          Length = 496

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 79/208 (37%), Gaps = 29/208 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C +C         N +   ++ +VL         P     + M + +   +++ + 
Sbjct: 64  CNIQCHYCNRKYD--CSNESRPGVVSEVLT--------PDQAVKKTMAVAATIPQMTVLG 113

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241
           + G G+PL N +   ++    S+         ++ +ST+G     ++  + +     + I
Sbjct: 114 IAGPGDPLANPERTFETFRRLSEEA----PDIKLCVSTNGLALPDSVEELSKHNIDHVTI 169

Query: 242 SLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPGL------SNARRITFEYVMLKG 291
           +++ V  ++   + P     N++                      +    +    VM+ G
Sbjct: 170 TINCVDPEIGAKIYPWIYWNNKRITGVKAAKILIQQQQKGLEMLIAKGILVKVNSVMIPG 229

Query: 292 INDSPRDALNLIKILKGIPAKI-NLIPF 318
           IND  +    + +++K   A + N++P 
Sbjct: 230 IND--QHLAEVSRVVKSKGAFLHNVMPL 255


>gi|251799217|ref|YP_003013948.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp. JDR-2]
 gi|247546843|gb|ACT03862.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp. JDR-2]
          Length = 244

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 45/217 (20%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC+L C FC+   T      R +T ++IL ++                    +P      
Sbjct: 27  GCALQCQFCHNPDTWDTAAGRQVTVDDILEEI-----------------EPYLPYYRGSG 69

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIG- 236
             I + G GEP      V        +  GL        L +SGF    + + +  +   
Sbjct: 70  GGITVTG-GEPTLQAPFVAALFKACKEKYGL-----HTALDSSGFCDPSHASELMNDTDL 123

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V+L +         R    P +R       + +         ++ +   +V++ GI D  
Sbjct: 124 VLLDLKQIDRDKHERLTSQPNDRILHFAKWLSSI--------SKPVWIRHVLIPGITDHA 175

Query: 297 RDALNLIKILKGIPAKIN-----LIPFNPWPGCEYLC 328
            D   L + + G+   +N     L+P++     ++  
Sbjct: 176 EDLRLLGRFIGGL---VNVERLELLPYHRMGVYKWQT 209


>gi|260753867|ref|YP_003226760.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258553230|gb|ACV76176.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 270

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 40/216 (18%)

Query: 122 VGCSLTCSFCYTGTQKLVRN---LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
            GC+L C +C+      ++N   +T  E++ +V      L    G   I G         
Sbjct: 55  AGCALRCQYCHNPDSWFLKNGRAVTLAEMMEEVASYADFLKRAGGGITISG--------- 105

Query: 179 ISNIVMMGMGEPLCNFD---NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
                    GEPL   +    + K+                  + T+GF+   A      
Sbjct: 106 ---------GEPLVQPEFTGALLKAAKYL---------GLHTAIDTAGFLGAQADDALLS 147

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              L +      ND R           L+  +   +    L     +   YV++ G+ D+
Sbjct: 148 NTDLVLLDIKAFNDKR---YKALTGVELQPTLAFAKWLAALKK--PVWLRYVLVPGLTDN 202

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYLCS 329
             +  NL      +    +++++PF+     ++  S
Sbjct: 203 FNEIANLADFAATLGNIERVDVLPFHKMGEYKWKAS 238


>gi|289548187|ref|YP_003473175.1| nitrogenase cofactor biosynthesis protein NifB [Thermocrinis albus
           DSM 14484]
 gi|289181804|gb|ADC89048.1| nitrogenase cofactor biosynthesis protein NifB [Thermocrinis albus
           DSM 14484]
          Length = 472

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 92/234 (39%), Gaps = 34/234 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C++C         N +   ++ ++L         P     + + +     +++ + 
Sbjct: 52  CNIQCNYCNRKYD--CANESRPGVVSELLT--------PEEAAKKVLAVAMEIPQLTVVG 101

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAI 241
           + G G+PL N +   ++  +  +         ++ LST+G V    I ++ +     + I
Sbjct: 102 IAGPGDPLANPERTFRTFELIKEKA----PDIKLCLSTNGLVLDKYINKIKDLEIDHVTI 157

Query: 242 SLHAVSNDLRNILVPI----NRKYPLEMLIDAC--RHYPGL----SNARRITFEYVMLKG 291
           +++AVS D  + + P     +R+Y  +        + Y GL     N   +    V +  
Sbjct: 158 TINAVSVDTASKIYPWIFYNHRRYRDKEAAKILLEKQYEGLQACVENGILVKVNTVFVPE 217

Query: 292 INDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY-----LCSDQKDIVTFSE 339
           IN    +   L K ++ + A + N++P+    G  +          +++    E
Sbjct: 218 ING--EEIPELSKKVRSMGAFLHNIMPYVEGEGTAFSKAGIRPPTPQELKEMQE 269


>gi|206890656|ref|YP_002248731.1| cofactor modifying protein, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742594|gb|ACI21651.1| cofactor modifying protein, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 326

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 82/247 (33%), Gaps = 40/247 (16%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           IE   +P      + VS    C+ +C +C   T K                         
Sbjct: 4   IEKFLMPYLDWIQIEVSGL--CNASCFYCPHTTHKK-------------------AWKGK 42

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                E   I    +K+  I + G GEP CN D   K + +A        S  ++  +T+
Sbjct: 43  NLSFFEFSSIIPYLKKVKLIYLQGWGEPFCNQD-FFKFVDVAKK------SGCKVGTTTN 95

Query: 223 GFV---PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP-LEMLIDACRHYPGLSN 278
           G +    +I ++ +    ++A SL  +    RN ++    K   +  +I+          
Sbjct: 96  GMLIEQSHIEKIIDTQMDIIAFSLTGI---KRNDILRAGTKIDKVFKVIEKLNEAKRKKG 152

Query: 279 --ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL---IPFNPWPGCEYLCSDQKD 333
               +I   Y++LK   D  ++   +   +      I++   IP         +   +++
Sbjct: 153 VFNPKIHIAYMLLKSNLDELKEIPEIFSKIGIQHVIISILDFIPHKSIENESLIPKTEEE 212

Query: 334 IVTFSEC 340
                  
Sbjct: 213 FNKLKNI 219


>gi|320354791|ref|YP_004196130.1| nitrogenase cofactor biosynthesis protein NifB [Desulfobulbus
           propionicus DSM 2032]
 gi|320123293|gb|ADW18839.1| nitrogenase cofactor biosynthesis protein NifB [Desulfobulbus
           propionicus DSM 2032]
          Length = 425

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 22/164 (13%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITL 219
           P    +    +     +IS + + G G+P  N D    ++ +        +      + L
Sbjct: 60  PEQALVYVDKVVEKEPRISVVGIAGPGDPFANPDETLATMRLIRTHHPEMI------LCL 113

Query: 220 STSG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL-------EMLIDA- 269
           ST+G    P++  + E     + I+++A+  ++   +    R   +         L+ A 
Sbjct: 114 STNGMHLAPHVPELAEIGVSHVTITVNAIDPEISQHIYAWVRDGKVLYRGLQGAELLLAR 173

Query: 270 -CRHYPGLS-NARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             R    L  +   +    +++ GIND       L   +K +  
Sbjct: 174 QLRAIALLKRHGITVKINTIVIPGINDH--HVPVLAATMKELGV 215


>gi|149134307|ref|YP_001293879.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           str. 13]
 gi|18144815|dbj|BAB80860.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens
           str. 13]
          Length = 235

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 85/235 (36%), Gaps = 36/235 (15%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154
           G    +ET+ + +       V  Q GC + C+FC+   T  +      T EE++ ++   
Sbjct: 4   GRIHSLETMGLVDGPGIRFVVFMQ-GCGIRCAFCHNPDTWCKDKGTEYTPEELVNKIKRF 62

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
           ++      G                  +   G GEPL   + + + L       G+    
Sbjct: 63  KTYFNASGGG-----------------VTFSG-GEPLLQPEFLLECLK-LCKKEGI---- 99

Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
              TL T+G          E   ++   +     +    LV      P++  ++  +   
Sbjct: 100 -HTTLDTAGVGLGNYEEILEYVDLILFDVKETDPEKYKSLV----GVPIDKSLEFLK--V 152

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             S  +++   +V++ G  D+  D + +   + G+    K+ L+P++     +Y 
Sbjct: 153 TQSMNKKMWIRHVVVPGYTDNKEDLMRIKNFVDGLNNIEKVELLPYHVLGVNKYE 207


>gi|333030502|ref|ZP_08458563.1| pyruvate formate-lyase activating enzyme [Bacteroides coprosuis DSM
           18011]
 gi|332741099|gb|EGJ71581.1| pyruvate formate-lyase activating enzyme [Bacteroides coprosuis DSM
           18011]
          Length = 244

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 77/248 (31%), Gaps = 51/248 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C FC+                    L +    +    E    +       K   +
Sbjct: 28  GCPLRCLFCHNPD---------------TWLGKDYKMELTVDEAFAEIQKVKGFIKKGGV 72

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
            + G GEPL   D + +      +      +     + TSGF+    +  V E   ++L 
Sbjct: 73  TISG-GEPLMQADFIYELFEKCKE------AGIHTAVDTSGFIQTKRVKEVLELTDLVL- 124

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + +  +  D    L       PL+  +D   +   ++ +  +   YV++ G  D+  D  
Sbjct: 125 LDVKHIDPDKYKALTSK----PLQPTLDFLNYLDEINKS--VWIRYVLIPGYTDAEDD-- 176

Query: 301 NLIKILKGIPAKIN-----LIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343
            L    K +    N     L+PF+     ++                 + I    E I  
Sbjct: 177 -LHNWCKEMVKHKNIQRIDLLPFHQMGQHKWEQMGLQYKLKDIVPPTNEQISKAEEIILS 235

Query: 344 SGYSSPIR 351
                 +R
Sbjct: 236 YNLPLALR 243


>gi|229543199|ref|ZP_04432259.1| pyruvate formate-lyase activating enzyme [Bacillus coagulans 36D1]
 gi|229327619|gb|EEN93294.1| pyruvate formate-lyase activating enzyme [Bacillus coagulans 36D1]
          Length = 245

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 87/248 (35%), Gaps = 61/248 (24%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC L C FC+   T        ++ EEI+  V                    +P +    
Sbjct: 29  GCPLRCKFCHNPDTWKINEGNEMSVEEIMSDV-----------------RDYLPFIKASG 71

Query: 180 SNIVMMGMGEPLCNFD---NVKKS-----LSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
             I + G GEPL + D    + K+     +  A D+ G  FS+          +  + ++
Sbjct: 72  GGITVSG-GEPLLHLDFLIELFKACKEIGVHTAIDTAGGCFSRS---------LRFMEKL 121

Query: 232 GEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
            E +     + + +  +  +    L  ++     E ++D  R+         +   +V++
Sbjct: 122 DELMKYTNLVLLDIKHIDPEKHKWLTGMSN----EHILDFARYLADK--HIPVWIRHVLV 175

Query: 290 KGINDSPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIV 335
             + DS  D       +  +P   KI ++P++          G +Y         ++ + 
Sbjct: 176 PSV-DSEEDLQKTSDFIHSLPNVEKIEILPYHKLGVYKYEALGIDYPLKGVEPPTKEQVA 234

Query: 336 TFSECIKR 343
              + +KR
Sbjct: 235 HAEQILKR 242


>gi|220929980|ref|YP_002506889.1| pyruvate formate-lyase activating enzyme [Clostridium
           cellulolyticum H10]
 gi|220000308|gb|ACL76909.1| pyruvate formate-lyase activating enzyme [Clostridium
           cellulolyticum H10]
          Length = 240

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 79/235 (33%), Gaps = 44/235 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+       R+  + E   ++   + +L +     +               I
Sbjct: 29  GCPLRCKYCH------NRDAWSSE-GAKLYSPQEVLKEIQKYRNFIDASHGG-------I 74

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--LA 240
            + G GEPL   + VK+         G+        + TSG+V N+  V + +     + 
Sbjct: 75  TVSG-GEPLIQHEFVKELFK-LCREAGI-----HTAVDTSGYV-NVEDVKDTLEYTDLVL 126

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + L   +      L  +  K      I     Y G    + +   YV++ G  D   D L
Sbjct: 127 LDLKQANAQKHLELTGVENK-----RIKLFTTYLG-EIGKPVWIRYVLIPGYTDGEEDLL 180

Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFSECI 341
                LKG     KI ++P++     ++                Q+++      +
Sbjct: 181 AAYNYLKGFKNIEKIEVLPYHIMGKAKWEKLNVQYPLEGVPSPTQEEVDRAKNIL 235


>gi|312864495|ref|ZP_07724726.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus downei
           F0415]
 gi|311099622|gb|EFQ57835.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus downei
           F0415]
          Length = 266

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 81/252 (32%), Gaps = 58/252 (23%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E+                    E +           I
Sbjct: 36  GCKMRCQYCH--------NPDTWEM-----ETNMSTERTVDDVLNEALRFKGYWGDTGGI 82

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--------PNIARVGEE 234
            + G GE +   + V     + +++  L       TL T GF           + ++   
Sbjct: 83  TVSG-GEAMLQIEFVTA---LFTEAHKLGI---HCTLDTCGFCYRPTAEYHKILDKLLAV 135

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             ++L + L  ++ +       I  + P + ++   R+         +   +V++ G+ D
Sbjct: 136 TDLVL-LDLKEINPEQ----HKIVTRQPNKNILLFARYLSDK--KVPVWIRHVLVPGLTD 188

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDI------ 334
              D + L K ++ +    K  ++P++     ++                ++ +      
Sbjct: 189 FDEDLIELGKFVETLDNVDKFEILPYHTLGEFKWRELGIPYTLEGVKPPTRERVANAKKL 248

Query: 335 ---VTFSECIKR 343
               ++ + +KR
Sbjct: 249 MHTESYQDYLKR 260


>gi|188590043|ref|YP_001921250.1| glycyl-radical enzyme activating protein family [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188500324|gb|ACD53460.1| glycyl-radical enzyme activating protein family [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 313

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/100 (10%), Positives = 34/100 (34%), Gaps = 13/100 (13%)

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWP 322
           ++++   +     +   R+     +++  ND+  +A+     +  +    INL+PF+   
Sbjct: 208 DLILKNIKELINSNWQGRLVIRMPVIRDFNDTVENAMATADFMNDLGIYEINLLPFHRMG 267

Query: 323 GCEY------------LCSDQKDIVTFSECIKRSGYSSPI 350
             ++              + +  +    +       +  I
Sbjct: 268 DSKWTQLGKKYSYSNDEPTSEDKLDELQDIYLDRKIACYI 307


>gi|315503285|ref|YP_004082172.1| pyruvate formate-lyase activating enzyme [Micromonospora sp. L5]
 gi|315409904|gb|ADU08021.1| pyruvate formate-lyase activating enzyme [Micromonospora sp. L5]
          Length = 261

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 42/215 (19%)

Query: 122 VGCSLTCSFCYT-----GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
            GC L C +C++     G     R  T +E++                     + +   G
Sbjct: 44  AGCPLRCRYCHSPDTWYGRSGRRR--TVDEMV------------TLATRYRRFIQVAGGG 89

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEE 234
             +S       GEPL      ++ L    D +GL        L TSGF  V     + + 
Sbjct: 90  VTVSG------GEPLLQPAFTRELLRRCHDDLGL-----HTALDTSGFLGVRADDALLDA 138

Query: 235 IG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              V+L +         R     +     L   +   +          I   YV++ G+ 
Sbjct: 139 TDLVLLDVKAGNPQTYRR-----VTGTGRLAPTLRFAQRLADR--GTPIWIRYVLVPGLT 191

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY 326
           D+  +   +  +  G+    ++ ++PF+     +Y
Sbjct: 192 DAVDEVERVADVAAGLATVQRVEVLPFHRLGAHKY 226


>gi|302866870|ref|YP_003835507.1| pyruvate formate-lyase activating enzyme [Micromonospora aurantiaca
           ATCC 27029]
 gi|302569729|gb|ADL45931.1| pyruvate formate-lyase activating enzyme [Micromonospora aurantiaca
           ATCC 27029]
          Length = 275

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 42/215 (19%)

Query: 122 VGCSLTCSFCYT-----GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
            GC L C +C++     G     R  T +E++                     + +   G
Sbjct: 58  AGCPLRCRYCHSPDTWYGRSGRRR--TVDEMV------------TLATRYRRFIQVAGGG 103

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEE 234
             +S       GEPL      ++ L    D +GL        L TSGF  V     + + 
Sbjct: 104 VTVSG------GEPLLQPAFTRELLRRCHDDLGL-----HTALDTSGFLGVRADDALLDA 152

Query: 235 IG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              V+L +         R     +     L   +   +          I   YV++ G+ 
Sbjct: 153 TDLVLLDVKAGNPQTYRR-----VTGTGRLAPTLRFAQRLADR--GTPIWIRYVLVPGLT 205

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY 326
           D+  +   +  +  G+    ++ ++PF+     +Y
Sbjct: 206 DAVDEVERVADVAAGLATVQRVEVLPFHRLGAHKY 240


>gi|168187980|ref|ZP_02622615.1| heme biosynthesis [Clostridium botulinum C str. Eklund]
 gi|169294199|gb|EDS76332.1| heme biosynthesis [Clostridium botulinum C str. Eklund]
          Length = 456

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 73/196 (37%), Gaps = 21/196 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+    K                AR ++    G + I+ +V  S
Sbjct: 96  ALCLNVTHDCNLRCKYCFADEGKYHG-------------ARKVMSPEVGKKAIDFVVAHS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             RK   + + G GEPL     +K+ ++ A +   +     R T++T+  + N   +   
Sbjct: 143 GPRKNIEVDLFG-GEPLIAIKEIKEIIAYAREQEKIHNKVIRFTMTTNALLLNDEIMEYM 201

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVML 289
             E   ++L+I      ND  N  + +N     + ++   +      +  +         
Sbjct: 202 DKEMGNIVLSIDGRKEVND--NTRIRVNGSGTYDSILPKIKEMVDKRDKSKQYYVRGTFT 259

Query: 290 KGINDSPRDALNLIKI 305
           +   D   D  +L  +
Sbjct: 260 RDNTDFYYDVKHLADL 275


>gi|307727788|ref|YP_003911001.1| Radical SAM domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307588313|gb|ADN61710.1| Radical SAM domain protein [Burkholderia sp. CCGE1003]
          Length = 377

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 8/139 (5%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+       L + L  V+ ++R  ++P     P+   +DA +   G+    +++  Y+
Sbjct: 231 FERMKASGIDTLGMHLEVVTPEVRARVMPGKASVPISRYMDAFKAAVGVFGKGQVS-TYI 289

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL-CSDQKDIVTFSECIKRSGY 346
           +  G+ D+    L++ + L  +     ++PF P  G           +      ++  G 
Sbjct: 290 L-AGLGDTAEAILSISRELIDMGVYPFVVPFVPISGTPLEDHPPPSHVFM-KSILEPLG- 346

Query: 347 SSPIRTP--RGLDILAACG 363
            + +R    R  DI A CG
Sbjct: 347 -AMLRDAQMRSADIKAGCG 364


>gi|320529449|ref|ZP_08030537.1| radical SAM domain protein [Selenomonas artemidis F0399]
 gi|320138415|gb|EFW30309.1| radical SAM domain protein [Selenomonas artemidis F0399]
          Length = 463

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 68/192 (35%), Gaps = 20/192 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           +LC+     C+L C +C+        +             R+++    G   ++ ++   
Sbjct: 94  SLCLMVAQDCNLRCKYCFGDGGSYGGH-------------RAIMSPEVGRAAVDFIINGC 140

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
             RK   I   G GEPL N   VK+  +        S  + ++TL+T+G + +   +   
Sbjct: 141 GSRKHCEIDFFG-GEPLMNLRTVKEVTAYVRKREQESGKEFKLTLTTNGMLLSDKNIAWL 199

Query: 235 IGVMLAISLHAVSNDLR----NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
               +++ L +  +  R    ++      +   ++++   R                  +
Sbjct: 200 NDNNISVVLSS--DGRREVHDSMRPDSAGQGTYDIVMRNFRKLVEARGGNDYYLRGTYTR 257

Query: 291 GINDSPRDALNL 302
              D  +D L L
Sbjct: 258 ENLDFTKDVLAL 269


>gi|110802909|ref|YP_699219.1| radical SAM domain-containing protein [Clostridium perfringens
           SM101]
 gi|110683410|gb|ABG86780.1| radical SAM domain protein [Clostridium perfringens SM101]
          Length = 450

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 87/270 (32%), Gaps = 40/270 (14%)

Query: 50  FQGMSDISQ-----EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIE 104
           +  + + ++      +   L   + +   E   E          L       +      E
Sbjct: 24  YNMIDNDNKLSSKESLIEKLKDKYPVEEIEEAYED--------LLQLVEEDALYSGDLYE 75

Query: 105 TVYIPEK----SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
            V             LC++    C+L C +C+    +                 R  +  
Sbjct: 76  EVAKESDKAPSYIKALCLNVVHDCNLRCKYCFADEGEYKGC-------------RKPMSA 122

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITL 219
             G + I+ ++  S G K   + + G GEPL  FD +K+ +       G    K  R T+
Sbjct: 123 EVGKKAIDFVLANSGGIKNIEVDLFG-GEPLMVFDTIKEIIDY-GKKRGQEVGKNVRFTM 180

Query: 220 STSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
           +T+  + N  R+         ++L+I      ND   I V  +  Y  + ++   +    
Sbjct: 181 TTNATLLNDERIDYIDKNIGNIILSIDGRKEVNDAVRIRVDGSGSY--DRILPNIKKMVE 238

Query: 276 LSNARRITFEYVMLKGIN-DSPRDALNLIK 304
             +  +  +        N D  +D + L  
Sbjct: 239 KRDPSKQYYARGTFTRNNTDFFQDVMALAN 268


>gi|296876029|ref|ZP_06900085.1| pyruvate formate-lyase activating enzyme [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432940|gb|EFH18731.1| pyruvate formate-lyase activating enzyme [Streptococcus
           parasanguinis ATCC 15912]
          Length = 264

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 79/251 (31%), Gaps = 56/251 (22%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N     +                    E +       +   I
Sbjct: 37  GCQMRCQYCH--------NPDTWAM-----ETNKSRERTVDDVLEEALRYRGFWGQKGGI 83

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237
            + G GE L   D +   +++ + +  L       TL T           + +    + V
Sbjct: 84  TVSG-GEALLQIDFL---IALFTKAQELGI---HCTLDTCALPFRNTPRYLEKFDRLMAV 136

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              + + +  ++++    +     K      I AC  Y      + +   +V++ G+ D 
Sbjct: 137 TDLVLLDIKEINDERHRFVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 190

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDI------- 334
             D + L K +K +    K  ++P++     ++                ++ +       
Sbjct: 191 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWRELGIPYKLEGVKPPTKERVQNAKDLM 250

Query: 335 --VTFSECIKR 343
              ++ + +KR
Sbjct: 251 ETESYQDYLKR 261


>gi|168204874|ref|ZP_02630879.1| radical SAM domain protein [Clostridium perfringens E str. JGS1987]
 gi|168208643|ref|ZP_02634268.1| radical SAM domain protein [Clostridium perfringens B str. ATCC
           3626]
 gi|168214137|ref|ZP_02639762.1| radical SAM domain protein [Clostridium perfringens CPE str. F4969]
 gi|168215568|ref|ZP_02641193.1| radical SAM domain protein [Clostridium perfringens NCTC 8239]
 gi|169343747|ref|ZP_02864746.1| radical SAM domain protein [Clostridium perfringens C str. JGS1495]
 gi|182624410|ref|ZP_02952194.1| radical SAM domain protein [Clostridium perfringens D str. JGS1721]
 gi|169298307|gb|EDS80397.1| radical SAM domain protein [Clostridium perfringens C str. JGS1495]
 gi|170663611|gb|EDT16294.1| radical SAM domain protein [Clostridium perfringens E str. JGS1987]
 gi|170713159|gb|EDT25341.1| radical SAM domain protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170714373|gb|EDT26555.1| radical SAM domain protein [Clostridium perfringens CPE str. F4969]
 gi|177910413|gb|EDT72790.1| radical SAM domain protein [Clostridium perfringens D str. JGS1721]
 gi|182382171|gb|EDT79650.1| radical SAM domain protein [Clostridium perfringens NCTC 8239]
          Length = 457

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 87/270 (32%), Gaps = 40/270 (14%)

Query: 50  FQGMSDISQ-----EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIE 104
           +  + + ++      +   L   + +   E   E          L       +      E
Sbjct: 31  YNMIDNDNKLSSKESLIEKLKDKYPVEEIEEAYED--------LLQLVEEDALYSGDLYE 82

Query: 105 TVYIPEK----SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
            V             LC++    C+L C +C+    +                 R  +  
Sbjct: 83  EVAKESDKAPSYIKALCLNVVHDCNLRCKYCFADEGEYKGC-------------RKPMSA 129

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITL 219
             G + I+ ++  S G K   + + G GEPL  FD +K+ +       G    K  R T+
Sbjct: 130 EVGKKAIDFVLANSGGIKNIEVDLFG-GEPLMVFDTIKEIIDY-GKKRGQEVGKNVRFTM 187

Query: 220 STSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
           +T+  + N  R+         ++L+I      ND   I V  +  Y  + ++   +    
Sbjct: 188 TTNATLLNDERIDYIDKNIGNIILSIDGRKEVNDAVRIRVDGSGSY--DRILPNIKKMVE 245

Query: 276 LSNARRITFEYVMLKGIN-DSPRDALNLIK 304
             +  +  +        N D  +D + L  
Sbjct: 246 KRDPSKQYYARGTFTRNNTDFFQDVMALAN 275


>gi|218439090|ref|YP_002377419.1| nitrogenase cofactor biosynthesis protein NifB [Cyanothece sp. PCC
           7424]
 gi|218171818|gb|ACK70551.1| nitrogenase cofactor biosynthesis protein NifB [Cyanothece sp. PCC
           7424]
          Length = 483

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 88/220 (40%), Gaps = 39/220 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C++C         N +   ++ +VL         P     + +VI     ++S + 
Sbjct: 67  CNIQCNYCNRKYD--CANESRPGVVSEVLT--------PEEAAHKVLVIAGKIPQMSVLG 116

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAI 241
           + G G+PL N +   ++  + +D         ++ LST+G +   +I R+ E     + I
Sbjct: 117 IAGPGDPLANPNQTFRTFELVADKA----PDIKLCLSTNGLMLSDHIDRIKELNVDHVTI 172

Query: 242 SLHAVSNDLRNILVPIN----RKYP-LE----------MLIDACRHYPGLSNARRITFEY 286
           +++ +  ++   + P      ++Y  LE            +DA R    L     +    
Sbjct: 173 TINMIDPEIGTKIYPWVRYNRKRYTGLEGVKILHERQMEGLDALREADILCKVNSV---- 228

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325
            M+ GIND       + ++++   A I N++P    P   
Sbjct: 229 -MIPGINDH--HLQEVNEVIRSKGAFIHNIMPLISAPEHG 265


>gi|15607030|ref|NP_214412.1| hypothetical protein aq_2060 [Aquifex aeolicus VF5]
 gi|2984285|gb|AAC07810.1| hypothetical protein aq_2060 [Aquifex aeolicus VF5]
          Length = 454

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 30/194 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C FC        RN           +    +         E +      +K   +V
Sbjct: 276 CNLHCVFCQRER---ERN---------FWVKGHWVWVDRDPSVEEVIREIGDPKKYEEVV 323

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGV--M 238
             G GEP   F  +K+      +  G      ++ + T+G +       ++ E  G+   
Sbjct: 324 FCGYGEPTLRFSALKEIAKWVKERGG------KVRVDTNGLMFTFLPKEKLKELKGIVDT 377

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
            ++SL+A   +  N +    +K   E +I+  +       A+R+ FE ++     D   D
Sbjct: 378 FSVSLNAPDPETYNAVCRPAQKDAFEKVIEFIKE------AKRLGFEVIVSAVDYDGV-D 430

Query: 299 ALNLIKILKGIPAK 312
                ++ K + AK
Sbjct: 431 MKKTEELAKSLGAK 444


>gi|309972700|gb|ADO95901.1| Pyruvate formate-lyase activating enzyme [Haemophilus influenzae
           R2846]
          Length = 246

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 85/248 (34%), Gaps = 54/248 (21%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              ++ E+++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDLEGGKE--ISVEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +                 ++      + G++       L T+GFV +   + +E+  
Sbjct: 87  FVRD---------------WFRACK----AEGIN-----TCLDTNGFVRHYDHIIDELLD 122

Query: 238 MLAISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           +  + L  +   ++ +   L+ +  K  LE        Y    N       YV++ G  D
Sbjct: 123 VTDLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQH-TWIRYVVVPGYTD 176

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
           S  D   L + ++G+    K+ L+P++     ++                ++ +      
Sbjct: 177 SDHDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTLGLDYELEDVLPPTKESLEHIKTI 236

Query: 341 IKRSGYSS 348
           ++  G++ 
Sbjct: 237 LEGYGHTV 244


>gi|320161653|ref|YP_004174878.1| hypothetical protein ANT_22520 [Anaerolinea thermophila UNI-1]
 gi|319995507|dbj|BAJ64278.1| hypothetical protein ANT_22520 [Anaerolinea thermophila UNI-1]
          Length = 638

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 75/242 (30%), Gaps = 44/242 (18%)

Query: 123 GCSLTCSFCYTGTQKL-VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           GC+  C FC+ G     VR    EEIL  +  A    G              +  +++  
Sbjct: 272 GCTRGCRFCHAGMVTRPVRERPVEEILQAIETALEATGYEEVGLLSLASSDYTHIQELVE 331

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
            V    G+                  + +S    RI   +   +  +  +    G  LA 
Sbjct: 332 AVTQQFGD----------------QKITVSLPSLRIESFSVELMKGLKSLKPSGGFTLAP 375

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
              A S  +R ++   N+  P E +++  R     ++       Y M+    ++  D   
Sbjct: 376 E--AASERMRRVI---NKFIPHEQILETAREI--FAHGWTTIKLYFMIGHPEETLEDVQA 428

Query: 302 LIKILK----------GIPAKIN-----LIPFNPWPGCEYLCSDQKDIVTFS--ECIKRS 344
           +I +            G  AK++      IP    P   +       +      + + + 
Sbjct: 429 IIDLCHAVLREGRRICGGRAKVHAGVSTFIP---KPHTPFQWVSADTMEQIQAKQALLQQ 485

Query: 345 GY 346
           G 
Sbjct: 486 GL 487


>gi|257462536|ref|ZP_05626947.1| Fe-S oxidoreductase [Fusobacterium sp. D12]
 gi|317060190|ref|ZP_07924675.1| Fe-S oxidoreductase [Fusobacterium sp. D12]
 gi|313685866|gb|EFS22701.1| Fe-S oxidoreductase [Fusobacterium sp. D12]
          Length = 274

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 23/186 (12%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C FC        ++ T E         R     F   +      +  V  K   + 
Sbjct: 28  CNLNCVFCEC---GPTKDWTVE---------RKHFISFEDFKQELEEALQQV--KPDYVT 73

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VMLAI 241
             G GEP  + D + K +              +I + T+  +     V EEI    ++  
Sbjct: 74  FSGSGEPTLSLD-LGKIIRYIKQHY-----SVKIAVITNSLLLYREDVLEEIQEADLIMP 127

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SLH V  ++   +      Y +E+L++  R          I  E  +++GIN S  D   
Sbjct: 128 SLHTVKQEVFEKIGRAYPGYRIELLLEGLRK-LSSRFQGEIDLELFLIEGINTSLEDLKE 186

Query: 302 LIKILK 307
               +K
Sbjct: 187 YADFVK 192


>gi|170761673|ref|YP_001788384.1| radical SAM domain-containing protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169408662|gb|ACA57073.1| radical SAM domain protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 455

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 76/200 (38%), Gaps = 33/200 (16%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+    +                 R L+    G + I+ ++  S
Sbjct: 96  ALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPRVGKKAIDFVIEKS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             RK   + + G GEPL  F  +K+ +  A +         R T++T+G + N   +   
Sbjct: 143 GPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEEKHNKIIRFTMTTNGTLLNQEIMEYL 201

Query: 232 -GEEIGVMLAISLHAV-SNDLR---------NILVPINRKYPLEMLIDACRHYPGLSNAR 280
                 ++L+I      ++++R         + ++P  +K  +  + D  + Y       
Sbjct: 202 DKNMGNIVLSIDGRKEINDNVRVRVDGSGSYDSILPKIKK--MVEMRDETKQYYARGTFT 259

Query: 281 RIT---FEYVMLKGINDSPR 297
           R     FE VM    ND   
Sbjct: 260 RENLDFFEDVMHMANNDFDE 279


>gi|118444426|ref|YP_877912.1| Heme biosynthesis [Clostridium novyi NT]
 gi|118134882|gb|ABK61926.1| Heme biosynthesis [Clostridium novyi NT]
          Length = 431

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 73/196 (37%), Gaps = 21/196 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+    K                AR ++    G + I+ ++  S
Sbjct: 71  ALCLNVTHDCNLRCKYCFADEGKYHG-------------ARKVMSPEVGKKAIDFVIAHS 117

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             RK   + + G GEPL     +K+ ++ A +   +     R T++T+  + N   +   
Sbjct: 118 GPRKNIEVDLFG-GEPLIAIKEIKEIIAYAREQEKIHNKVIRFTMTTNALLLNDEIMEYM 176

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVML 289
             E   ++L+I      ND  N  + +N     + ++   +      +  +         
Sbjct: 177 DKEMGNIVLSIDGRKEVND--NTRIRVNGSGTYDAILPKIKEMVDKRDKSKQYYVRGTFT 234

Query: 290 KGINDSPRDALNLIKI 305
           +   D   D  +L  +
Sbjct: 235 RDNTDFYYDVKHLADL 250


>gi|187778355|ref|ZP_02994828.1| hypothetical protein CLOSPO_01947 [Clostridium sporogenes ATCC
           15579]
 gi|187771980|gb|EDU35782.1| hypothetical protein CLOSPO_01947 [Clostridium sporogenes ATCC
           15579]
          Length = 446

 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 76/200 (38%), Gaps = 33/200 (16%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+    +                 R L+    G + I+ ++  S
Sbjct: 87  ALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPQIGKKAIDFVIEKS 133

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVG 232
             RK   + + G GEPL  F  +K+ +  A +         R T++T+G      I    
Sbjct: 134 GPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEKKHNKTIRFTMTTNGTLLNKEIMEYL 192

Query: 233 EEIGVMLAISL---HAVSNDLR---------NILVPINRKYPLEMLIDACRHYPGLSNAR 280
           ++    + +S+     +++++R         + ++P  ++  +  + D  + Y       
Sbjct: 193 DKNMGNIVLSIDGRKEINDNVRVRVDGSGSYDSILPKIKE--MVEMRDKTKQYYARGTFT 250

Query: 281 RIT---FEYVMLKGINDSPR 297
           R     FE VM    ND   
Sbjct: 251 RENLDFFEDVMHMANNDFDE 270


>gi|303246908|ref|ZP_07333184.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
 gi|302491615|gb|EFL51498.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ]
          Length = 335

 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 84/267 (31%), Gaps = 50/267 (18%)

Query: 91  RFPARCIGGPV-EIETVYIPEKSRGTLC-VSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           RFP R     V  +ETV       G  C +    GC+  C +C                 
Sbjct: 33  RFPDRWCATAVSRVETVPFYHAWPGARCLIIGTAGCNFDCRYCSN--------------- 77

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP---LCNFDNVKKSLSIAS 205
            +V+            E     ++    +   + ++  + EP   L + + V +      
Sbjct: 78  AEVVKVDPAGLSDIMLELSPKALVDKARKHGCHAIVFSVNEPTVSLPSLEQVAREAR--- 134

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKY-PL 263
              G+         +T   V    R+ E    V +++   +             ++Y  +
Sbjct: 135 -DAGMPMGCLTNGYAT---VAATERLAEVFSFVNVSLKGLSPD---------FCKEYLGV 181

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN--LIKILKGIPAKINLIPFNPW 321
                  R+   L+    +     +++G+ND   DA+   L  I +        IP++ +
Sbjct: 182 PDAGPILRNIEALARKVHVEVTTPVIEGVNDHELDAMAVFLAGIRRD-------IPWHAF 234

Query: 322 ---PGCEYLCSDQKDIVTFSECIKRSG 345
              P  +    D   I   S  I+  G
Sbjct: 235 RLLPEYKMQREDYPSIEAISAKIEDCG 261


>gi|251780244|ref|ZP_04823164.1| glycyl-radical enzyme activating protein family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084559|gb|EES50449.1| glycyl-radical enzyme activating protein family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 313

 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/100 (10%), Positives = 34/100 (34%), Gaps = 13/100 (13%)

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWP 322
           ++++   +     +   R+     +++  ND+  +A+     +  +    INL+PF+   
Sbjct: 208 DLILKNIKELINSNWQGRLVIRMPVIRDFNDTVENAMATADFMNDLGIYEINLLPFHRMG 267

Query: 323 GCEY------------LCSDQKDIVTFSECIKRSGYSSPI 350
             ++              + +  +    +       +  I
Sbjct: 268 DSKWTQLGKKYSYRNDEPTSEDKLDELQDIYLDRKIACYI 307


>gi|18310925|ref|NP_562859.1| astB/chuR-related protein [Clostridium perfringens str. 13]
 gi|18145607|dbj|BAB81649.1| astB/chuR-related protein [Clostridium perfringens str. 13]
          Length = 457

 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 87/270 (32%), Gaps = 40/270 (14%)

Query: 50  FQGMSDISQ-----EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIE 104
           +  + + ++      +   L   + +   E   E          L       +      E
Sbjct: 31  YNMIDNDNKLSSKESLIEKLKDKYPVEEIEEAYED--------LLQLVEEDALYSGDLYE 82

Query: 105 TVYIPEK----SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
            V             LC++    C+L C +C+    +                 R  +  
Sbjct: 83  EVAKESDKAPSYIKALCLNVVHDCNLRCKYCFADEGEYKGC-------------RKPMSA 129

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITL 219
             G + I+ ++  S G K   + + G GEPL  FD +K+ +       G    K  R T+
Sbjct: 130 EVGKKAIDFVLANSGGIKNIEVDLFG-GEPLMVFDTIKEIIDY-GKKRGQEVGKNVRFTM 187

Query: 220 STSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
           +T+  + N  R+         ++L+I      ND   I V  +  Y  + ++   +    
Sbjct: 188 TTNATLLNDERIDYIDKNIGNIILSIDGRKEVNDAVRIRVDGSGSY--DRILPNIKKMVE 245

Query: 276 LSNARRITFEYVMLKGIN-DSPRDALNLIK 304
             +  +  +        N D  +D + L  
Sbjct: 246 KRDPSKQYYARGTFTRNNTDFFQDVMALAN 275


>gi|69248399|ref|ZP_00604735.1| Formate acetyltransferase activating enzyme [Enterococcus faecium
           DO]
 gi|257878034|ref|ZP_05657687.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,230,933]
 gi|257881180|ref|ZP_05660833.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,502]
 gi|257884843|ref|ZP_05664496.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,501]
 gi|257889767|ref|ZP_05669420.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,410]
 gi|257892296|ref|ZP_05671949.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,408]
 gi|258616472|ref|ZP_05714242.1| pyruvate formate-lyase activating enzyme [Enterococcus faecium DO]
 gi|260559084|ref|ZP_05831270.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           C68]
 gi|293563436|ref|ZP_06677885.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1162]
 gi|293568151|ref|ZP_06679487.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1071]
 gi|294622318|ref|ZP_06701361.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           U0317]
 gi|314938046|ref|ZP_07845356.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133a04]
 gi|314941968|ref|ZP_07848829.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133C]
 gi|314948779|ref|ZP_07852151.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0082]
 gi|314951797|ref|ZP_07854836.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133A]
 gi|314991796|ref|ZP_07857254.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133B]
 gi|314995837|ref|ZP_07860924.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133a01]
 gi|68194435|gb|EAN08938.1| Formate acetyltransferase activating enzyme [Enterococcus faecium
           DO]
 gi|257812262|gb|EEV41020.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,230,933]
 gi|257816838|gb|EEV44166.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,502]
 gi|257820681|gb|EEV47829.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,501]
 gi|257826127|gb|EEV52753.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,410]
 gi|257828675|gb|EEV55282.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,231,408]
 gi|260074841|gb|EEW63157.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           C68]
 gi|291589141|gb|EFF20953.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1071]
 gi|291598210|gb|EFF29308.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           U0317]
 gi|291604697|gb|EFF34182.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1162]
 gi|313589941|gb|EFR68786.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133a01]
 gi|313593607|gb|EFR72452.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133B]
 gi|313596076|gb|EFR74921.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133A]
 gi|313599220|gb|EFR78065.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133C]
 gi|313642621|gb|EFS07201.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0133a04]
 gi|313644845|gb|EFS09425.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           TX0082]
          Length = 253

 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 91/275 (33%), Gaps = 56/275 (20%)

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEIL 148
              + IG    IET    +       V  Q GC + C FC+   T      +  TA+E+L
Sbjct: 1   MEEKTIGYVHSIETFGSVDGPGLRFVVFMQ-GCRMRCQFCHNPDTWNIGGGKEYTADELL 59

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            +    R   GD  G                  I + G GEPL   D + +    A +  
Sbjct: 60  DKAERFRPYWGDKGG------------------ITVSG-GEPLLQIDFLIELFKKAKER- 99

Query: 209 GLSFSKRRITLSTSGFV-----PNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKY 261
                K   TL T G       P  +R  E +     L   +  + N+    L      +
Sbjct: 100 -----KMHTTLDTCGKPFTYEEPFFSRFQELMKYTDLLLFDIKHIDNEEHKKLT----HW 150

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN 319
             E +++  ++   ++    +   +V++   +D     + L   ++ +    ++ ++P++
Sbjct: 151 DNENILEMAQYLSKINK--PVWIRHVLVPERSDYDEYLIRLDNFIQTLSNVDRVEILPYH 208

Query: 320 PWPGCEY------------LCSDQKDIVTFSECIK 342
                ++                ++ +      + 
Sbjct: 209 TMGKYKWETLGLKYPLEGIEPPTKERVENAKRLLH 243


>gi|330507855|ref|YP_004384283.1| hypothetical protein MCON_1878 [Methanosaeta concilii GP-6]
 gi|328928663|gb|AEB68465.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 308

 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 61/189 (32%), Gaps = 23/189 (12%)

Query: 124 CSLTCSFCYTGTQ----KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           C+  C  C+             +   E+L  +L  +       G       V     R+ 
Sbjct: 61  CNHLCLHCWRPIDDPIPGKEP-MEPAELLEGILRGQQRFISGYGGSSTTDPVRLEEAREP 119

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
            ++ +  MGEP   +  +K+ + +         S+R +T            + E     L
Sbjct: 120 KHMAISLMGEPTL-YPYLKEFIDLV--------SRRGMTSFLVSNATRPEVLAELRPTQL 170

Query: 240 AISLHAVSNDL-RNILVPINRKYP-LEMLIDACRHYPGLSNARRITFEYVMLKGINDS-- 295
            +SL+A   +  R I  P    +P +   ++  +      +  R      +++G N    
Sbjct: 171 YLSLNAPDEERYRQICNPSKDLWPRILESLELLKE-----HRCRSVIRMTLVRGQNMEGL 225

Query: 296 PRDALNLIK 304
              A  +  
Sbjct: 226 DDYARLIGD 234


>gi|238922271|ref|YP_002935785.1| pyruvate formate lyase activating enzyme [Eubacterium eligens ATCC
           27750]
 gi|238873943|gb|ACR73651.1| pyruvate formate lyase activating enzyme [Eubacterium eligens ATCC
           27750]
          Length = 259

 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 79/247 (31%), Gaps = 51/247 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+                 +         +       +     +  +    I
Sbjct: 37  GCHMRCRYCHNP---------------ETWKEEGGTLETAQEVFDKAYRYRNYWKNGGGI 81

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234
            + G GE L     V +   IA  +          TL TSG        ++    R+   
Sbjct: 82  TVSG-GEALLQMGFVTELFEIAKKN------GVHTTLDTSGNPFKMEPEYLEKFDRLMAV 134

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             + L + +  +++D    L     K  L+        Y    N   +   +V++ G+ D
Sbjct: 135 TDLFL-LDIKEINDDKHKDLTGWTNKNILD-----LAKYLSDHNKD-MWIRHVLVPGVTD 187

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEYL-----CSDQKDIVTFSEC 340
           +  D   L   + G+    +  ++P++          G  Y        D++ +   ++ 
Sbjct: 188 AQEDLEQLRDFVAGLKTVKRFEVLPYHTLGVFKWEELGIPYTLSDVMPPDKEQVARANDI 247

Query: 341 IKRSGYS 347
           ++ + Y+
Sbjct: 248 LRTAEYT 254


>gi|255525040|ref|ZP_05391986.1| pyruvate formate-lyase activating enzyme [Clostridium
           carboxidivorans P7]
 gi|296187392|ref|ZP_06855787.1| pyruvate formate-lyase 1-activating enzyme [Clostridium
           carboxidivorans P7]
 gi|255511296|gb|EET87590.1| pyruvate formate-lyase activating enzyme [Clostridium
           carboxidivorans P7]
 gi|296047914|gb|EFG87353.1| pyruvate formate-lyase 1-activating enzyme [Clostridium
           carboxidivorans P7]
          Length = 264

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 96/277 (34%), Gaps = 54/277 (19%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQ 150
            + +G    IE+    +       +  + GC + C FC+   T         T +E+L Q
Sbjct: 14  DKNLGKIHSIESFGSVDGPGIRFVIFLK-GCHMRCQFCHNPDTWDMDGAETKTVDELLSQ 72

Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210
            L                     +  +K   I + G GEPL   D + K  + A      
Sbjct: 73  AL------------------KYKTYWKKGGGITVSG-GEPLLQIDFLIKFFTKAKAK--- 110

Query: 211 SFSKRRITLSTSGFV-----PNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLE 264
                 +TL TSG       P   +  E + V  L +      ++  + ++     +   
Sbjct: 111 ---GVHVTLDTSGNPFTREQPFFGKFNELMKVTDLVMLDIKQIDEAEHKILTG---WSNS 164

Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN--- 319
            ++D  R+   ++    +   +V++ G +D+      L + +K +    ++ ++P++   
Sbjct: 165 NILDMARYLSEINK--PVWIRHVLVPGGSDNDDQLTKLDEFIKTLKNVDRVEVLPYHILG 222

Query: 320 ----PWPGCEY-----LCSDQKDIVTFSECIKRSGYS 347
                  G +Y         +  I    + +  S Y+
Sbjct: 223 TFKWEQLGIDYPLKGVEPPTKGRIENARKLLHTSEYN 259


>gi|320102928|ref|YP_004178519.1| pyruvate formate-lyase activating enzyme [Isosphaera pallida ATCC
           43644]
 gi|319750210|gb|ADV61970.1| pyruvate formate-lyase activating enzyme [Isosphaera pallida ATCC
           43644]
          Length = 273

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 86/281 (30%), Gaps = 57/281 (20%)

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN---LTAEE 146
           L      +G    IE   + +      C     GC L C +C+       RN   +  EE
Sbjct: 27  LLTAQGRLGRVHSIEWGSMVDGPGLR-CAIFLSGCLLRCQYCHNPDTWAPRNGRLVEVEE 85

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
           ++ ++     ++    G                   V +  GEPL   D    +  I   
Sbjct: 86  VIDRLRPYLRMMSLGHGG------------------VTLSGGEPLY-QDRF--AFEIFKA 124

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA-----VSNDLRNILVPINRKY 261
             GL        L TSG++    R  EE   ++ + L            R  L P     
Sbjct: 125 CRGLGL---HTALDTSGYLG--DRASEEDLDLVDLVLLDLKSGDPDLYQRLTLKP----- 174

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL--IPFN 319
            LE  +   R     ++   +   +V++ G+ D   +   L   +   P    L  +PF+
Sbjct: 175 -LEPTLRFARRLAARNH--PVWIRFVLVPGLTDPVDNLEALANHVAAWPNVERLEVLPFH 231

Query: 320 PWPGCEYLC------------SDQKDIVTFSECIKRSGYSS 348
                +Y              +    +    E ++  G  +
Sbjct: 232 QMGQYKYEAMGIPYPLANHPEATADQVRQVVEWLRSRGVPA 272


>gi|207108372|ref|ZP_03242534.1| hypothetical protein HpylH_01830 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 28

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 348 SPIRTPRGLDILAACGQLKSLS 369
             IR  + LDI AACGQL+   
Sbjct: 2   CTIRESKALDIEAACGQLREKK 23


>gi|254444254|ref|ZP_05057730.1| nitrogenase cofactor biosynthesis protein NifB [Verrucomicrobiae
           bacterium DG1235]
 gi|198258562|gb|EDY82870.1| nitrogenase cofactor biosynthesis protein NifB [Verrucomicrobiae
           bacterium DG1235]
          Length = 438

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 66/198 (33%), Gaps = 25/198 (12%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
           PG   +    I      I+ + + G G+P  N +   ++  +        F    + LST
Sbjct: 69  PGQALVYLEKIMESREDIAVVGIAGPGDPFANPNETMETFRLVRAR----FPNMILCLST 124

Query: 222 SGF---VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP------------LEML 266
           +G       +  +       + I+++    ++   +    R               +E  
Sbjct: 125 NGLGLTEEYVKELAALQVSHVTITMNGTDPEIAGQVYAWARHDKRIFRHEKAGALMIEKQ 184

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325
           + A R         ++    +++ G+ND       + K +  + A I N IP  P     
Sbjct: 185 LQAIRWIKQYGMIAKVN--SIIVPGVND--EHLHEIAKTVSELGADIMNCIPLLPTKDTV 240

Query: 326 YLC-SDQKDIVTFSECIK 342
           +    +    + F+  IK
Sbjct: 241 FENHPEPDSKMRFATQIK 258


>gi|310777957|ref|YP_003966290.1| pyruvate formate-lyase activating enzyme [Ilyobacter polytropus DSM
           2926]
 gi|309747280|gb|ADO81942.1| pyruvate formate-lyase activating enzyme [Ilyobacter polytropus DSM
           2926]
          Length = 244

 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 75/245 (30%), Gaps = 46/245 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+                           +      ++ +       +    
Sbjct: 30  GCPLRCKYCHNPD---------------TWHMPDASYEEDANYIVKEISRYKPFFRNGGG 74

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLA 240
           + +  GEP    +  K+   +  ++           + TSG      +    E + ++L 
Sbjct: 75  MTLSGGEPFMQAEFAKELFRLCKEND------INTAVDTSGIYLNDTVKEALEYVDLVL- 127

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + +  +  +    +     K  LE  +   R+   +     +   +V++ GI D      
Sbjct: 128 LDIKCIDPE----IYKDLTKVELEPTLKFARYLSDIKK--PVWIRHVLVPGITDREDLLE 181

Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGY 346
            L   +  +    K+ ++P++     ++                ++ +    E  ++ G 
Sbjct: 182 KLGDFIASLENVEKMEILPYHSLGEYKWEELGYEYELKGVEPPTKEAVEKAKEIFRKKG- 240

Query: 347 SSPIR 351
             PIR
Sbjct: 241 -VPIR 244


>gi|304316819|ref|YP_003851964.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778321|gb|ADL68880.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 471

 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 87/244 (35%), Gaps = 35/244 (14%)

Query: 72  YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
           +PE++ E ++ D T                 +E + I         V+   GC+  C++C
Sbjct: 142 FPELLQESLNSDTTI------IDIWDDNKSIVEDIPIRRAEGLKAWVNIIYGCNNFCTYC 195

Query: 132 YTGT-QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI-SNIVMMGMGE 189
                +   ++    +IL ++   +SL  +      + G  + S G  +   I    +  
Sbjct: 196 IVPYVRGREKSREPHDILNEI---KSLANEGFKEITLLGQNVNSYGNDLPIKIDFADL-- 250

Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV---GEEIGVMLAISLHAV 246
                      L + +D  G+     RI   TS       ++     ++   L   LH  
Sbjct: 251 -----------LYMINDIDGI----ERIRFMTSHPKDISDKLIFAMRDLD-KLCEHLHLP 294

Query: 247 SNDLRNILV-PINRKYPLEMLIDACRHYPGLSNARRITFEYVM-LKGINDSP-RDALNLI 303
                N ++  +NRKY  E  ++             IT + ++   G  D   +D L+L+
Sbjct: 295 VQSGSNKILERMNRKYSRERYLEIINKLRDNIPGIAITTDIIVGFPGETDKDFQDTLDLV 354

Query: 304 KILK 307
           K ++
Sbjct: 355 KEVR 358


>gi|308233496|ref|ZP_07664233.1| pyruvate formate-lyase activating enzyme [Atopobium vaginae DSM
           15829]
 gi|328943744|ref|ZP_08241209.1| pyruvate formate-lyase-activating enzyme [Atopobium vaginae DSM
           15829]
 gi|327491713|gb|EGF23487.1| pyruvate formate-lyase-activating enzyme [Atopobium vaginae DSM
           15829]
          Length = 257

 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 13/88 (14%)

Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL----- 327
              ++   I     ++   N+S  DA    ++ K +   K+ L+PF+ +   +Y      
Sbjct: 168 YAFTHNTHIVLRIPVIPDFNNSLEDAAQFGQLFKKMHVNKVQLLPFHQFGENKYKLLKRV 227

Query: 328 ------CS-DQKDIVTFSECIKRSGYSS 348
                      +D+  + + + + G + 
Sbjct: 228 YQMGKYKPLHPEDLYDYRDVLCKQGINC 255


>gi|327403999|ref|YP_004344837.1| MiaB-like tRNA modifying enzyme [Fluviicola taffensis DSM 16823]
 gi|327319507|gb|AEA43999.1| MiaB-like tRNA modifying enzyme [Fluviicola taffensis DSM 16823]
          Length = 448

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 69/213 (32%), Gaps = 26/213 (12%)

Query: 105 TVYIP---EKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGD 160
           T +IP      R    +  Q GC   C+FC         RN +   I   VL AR +   
Sbjct: 147 TSFIPSHSMGDRTRSFLKIQDGCDYFCTFCTIPLARGKSRNAS---ISDTVLEARKIAET 203

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
                 + G+ I   G+        G GE   NF  + K+L   +       S     L 
Sbjct: 204 NIKEVVLTGVNIGDFGQ--------GEGE---NFFELVKALDEVNGIDRYRISSIEPNL- 251

Query: 221 TSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPIN-RKYPLEMLIDACRHYPGLSNA 279
                  I +   E         H       N L+    RKY  E+ ++  +H   L   
Sbjct: 252 ---LSDEIIQFTLENSKRFVPHFHIPLQSGSNRLLKAMRRKYLRELYVERVQHIKKLRPD 308

Query: 280 RRITFEYVM-LKGINDSPRDALNLIKILKGIPA 311
             I  + ++   G  D   + +  +  LK +  
Sbjct: 309 CAIGVDVIVGFPGETD--EEFIETMDFLKDLDV 339


>gi|323703435|ref|ZP_08115083.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531616|gb|EGB21507.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 280

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 86/242 (35%), Gaps = 50/242 (20%)

Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           C++ C++C          R     E+L             P   + + +V+      +S 
Sbjct: 18  CNIACNYCNRKYDCVNESRPGVTSEVL------------TPVSAEQKFIVVKEKIPNLSV 65

Query: 182 IVMMGMGEPLCNFDNVKKSLSIA---SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           + + G G+ L N++N  +++      +  M    S   + L    + P I  +G +    
Sbjct: 66  VGIAGPGDALANWENTCEAIERIKQSNPEMIFCLSTNGLLL--PHYAPEIVELGIK---H 120

Query: 239 LAISLHAVSNDLRNILVPI----NRKYP--------LEMLIDACRHYPGLSNARRITFEY 286
           + ++++ ++ D    +        +KY         LE  +   ++        ++    
Sbjct: 121 VTVTMNTLNPDTGAKIYRHVHYQGKKYEGTVGAGILLENQLTGIQYLAHQGVLVKVNI-- 178

Query: 287 VMLKGINDSP-----RDALNLIKILKGIPAKINLIPFNPWPGCEY---LCSDQKDIVTFS 338
           VM+K INDS      + A  L   +       N++P  P  G  +     +  K++    
Sbjct: 179 VMIKDINDSEIPAVVKKAKQLGAFM------TNIMPLIPAEGSVFANLPPTSIKELNQMR 232

Query: 339 EC 340
           + 
Sbjct: 233 DR 234


>gi|307288839|ref|ZP_07568817.1| radical SAM domain protein [Enterococcus faecalis TX0109]
 gi|306500308|gb|EFM69647.1| radical SAM domain protein [Enterococcus faecalis TX0109]
 gi|315166214|gb|EFU10231.1| radical SAM domain protein [Enterococcus faecalis TX1302]
          Length = 465

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 22/176 (12%)

Query: 89  LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           LL+   +     V +E V  P +    L   S   C+L C++C+ G +    +++     
Sbjct: 51  LLKQFKKENSSDVAVEKV--PGRGTVALTFMSARTCNLGCTYCFAG-EGEYGSVSD---- 103

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-- 206
                 +          +     + +    I ++   G GEP+ NF  +K  +  A D  
Sbjct: 104 ------KPAFFTKENYMNAVRFALENYSDGIKSMCFFG-GEPMINFREIKSFVKEAQDFF 156

Query: 207 -SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261
               + F    I  +  G         ++  + +  SL          L  + R Y
Sbjct: 157 KKNDMEFPPTSICTNLVGISSKAIEFLKDNNIFIVTSLDGP-----KKLNDLARIY 207


>gi|20089058|ref|NP_615133.1| hypothetical protein MA0160 [Methanosarcina acetivorans C2A]
 gi|19913917|gb|AAM03613.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 326

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 63/186 (33%), Gaps = 21/186 (11%)

Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN--------IVMMGMG 188
              +N   + I  Q+    S LG     ++       S   +  +        +   G  
Sbjct: 28  GSKKNCNYDCIYCQLGHVESKLGSPEDVKEPVTSKEVSQSFRNFHKDIEGLDYVTFSGTC 87

Query: 189 EPLCN--FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246
           EP  N     + +++      +G       IT S+     ++ +   +  +++A  +   
Sbjct: 88  EPSLNLSLGEMIRAVR----EIG-GIPVCVITNSSLVGREDVRKNLAQADLIVATLVSGN 142

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG-----INDSPRDALN 301
            N  R  +        L+ +I+  R        +++  E + L+      +N +  +  +
Sbjct: 143 ENTWR-KIHRPASGIALQEIIEGLRELAKGGAGKKLALEVMFLESEAGKPLNSTDEEVES 201

Query: 302 LIKILK 307
           LI  ++
Sbjct: 202 LIATIR 207


>gi|224548824|dbj|BAH24164.1| NifB protein [Paenibacillus fujiensis]
          Length = 458

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 86/248 (34%), Gaps = 50/248 (20%)

Query: 124 CSLTCSFCYTGTQKLVR-----NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           C++ C++C        R     N +   ++ +VL         P   + +   + +   +
Sbjct: 42  CNIQCNYC-------NRKFDCVNESRPGVVSEVLT--------PEQAERKVKGVAAQLMQ 86

Query: 179 ISNIVMMGMGEPLCNFDNVKK-SLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI 235
           +S + + G G+PL N D        +      +    S   +TL       +I R+ E  
Sbjct: 87  LSVVGIAGPGDPLANADKTFDTFARVKKHVPDVMTCLSTNGLTLY-----RHIDRIVELG 141

Query: 236 GVMLAISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRIT 283
              + I+++A+  D+   + P                  +   +              + 
Sbjct: 142 IGHVTITINAIDPDVGKEIYPWVFDEGVRYEGREAAALLISRQLQEVEELAKR--GILVK 199

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY-----LCSDQKDIVTF 337
              +M+ G+ND  +  + + K +K + A + N+ P    PG +Y          K++   
Sbjct: 200 VNSIMIPGVND--KHLVEVSKKVKELGATLHNVTPLIIAPGSQYEKDGRKAPRPKELNQL 257

Query: 338 SECIKRSG 345
            E +   G
Sbjct: 258 QEQLSEGG 265


>gi|319935770|ref|ZP_08010199.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. 29_1]
 gi|319809205|gb|EFW05654.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. 29_1]
          Length = 254

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 31/211 (14%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C FC+                     ++      P     + M   S   +   I
Sbjct: 30  GCPLRCQFCHNPD---------------TWGSQKYQEMTPEAALKQAMKYKSYWGEKGGI 74

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARVGEEIGVM- 238
            + G GEPL   + + +   +A        +  S    T S     P  ++  E +    
Sbjct: 75  TISG-GEPLMQMEFILELFKLAKKENINTCIDTSGGCFTRS----EPFFSQFQELMKYTD 129

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           L +    V N+ ++ L+       +  +             + +   +V++   ND   D
Sbjct: 130 LLLVDIKVMNEEKHKLLTGKGNQNILDMTRYLSEI-----GKPVWIRHVLVPERNDYDED 184

Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
              L + +K +    ++ ++P++     ++ 
Sbjct: 185 LEELNEFIKSLKNVQRVEVLPYHTLGTFKWK 215


>gi|153955689|ref|YP_001396454.1| NifK/nifB [Clostridium kluyveri DSM 555]
 gi|219856063|ref|YP_002473185.1| hypothetical protein CKR_2720 [Clostridium kluyveri NBRC 12016]
 gi|146348547|gb|EDK35083.1| NifK/nifB [Clostridium kluyveri DSM 555]
 gi|219569787|dbj|BAH07771.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 890

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 68/180 (37%), Gaps = 21/180 (11%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
           P     +  ++      ++ I + G G+ L NF  VKKSL +          K    LST
Sbjct: 525 PEEALEKFKLVKGKIENLTVIGIAGPGDALANFPKVKKSLELIRKED----PKITFCLST 580

Query: 222 SGFVPNIA--RVGEEIGVMLAISLHAVSNDLRNILVP----INRKYPLEMLIDAC----- 270
           +G +      ++ E     + ++++AV   +  ++      +  KY  E           
Sbjct: 581 NGLMLPFYANQLIELGVSHVTVTINAVDEKIGALIYKEVNYLEHKYKGEEGARILLNNQL 640

Query: 271 --RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327
               Y   S         VMLKGINDS      ++K +K   A + N++   P  G  + 
Sbjct: 641 SGLEYL-CSKGVVCKVNIVMLKGINDS--HIKEVVKKVKDCGAYMTNIMQMIPVQGSGFE 697


>gi|301168830|emb|CBW28421.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae
           10810]
          Length = 246

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 83/248 (33%), Gaps = 54/248 (21%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              ++ E+++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDLEGGKE--ISVEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +                 ++        G++       L T+GFV +   + +E+  
Sbjct: 87  FVRD---------------WFRACK----EEGIN-----TCLDTNGFVRHYDHIIDELLD 122

Query: 238 MLAISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           +  + L  +   ++ +   L+ +  K  LE        Y    N       YV++ G  D
Sbjct: 123 VTDLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQH-TWIRYVVVPGYTD 176

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
           S  D   L + ++G+    K+ L+P++     ++                ++ +      
Sbjct: 177 SDHDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTLGLDYELENVLPPTKESLEHIKTI 236

Query: 341 IKRSGYSS 348
           ++  G+  
Sbjct: 237 LEGYGHIV 244


>gi|302384753|ref|YP_003820575.1| pyruvate formate-lyase activating enzyme [Clostridium
           saccharolyticum WM1]
 gi|302195381|gb|ADL02952.1| pyruvate formate-lyase activating enzyme [Clostridium
           saccharolyticum WM1]
          Length = 257

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 74/214 (34%), Gaps = 37/214 (17%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T        +TAEE+L Q   +R+                       
Sbjct: 27  GCPMRCQYCHNPDTWKMAGGTPMTAEELLKQFESSRNFYRGGGITATG------------ 74

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARVGEEIG 236
                   GEPL   D V +    A        L  S      +   ++  I R+ E   
Sbjct: 75  --------GEPLMQLDFVTELFEAAKKKDIHTCLDTSGVMFHRNGPDYLNKIDRLLEHTD 126

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            ++ + +  + +    +L   +     E ++D  R+         +   +V++  I D  
Sbjct: 127 -LVMLDIKHMDDPKHKVLTGQSN----ENILDFARYLSQKE--IPVWIRHVVVPQITDQT 179

Query: 297 RDALNLIKI---LKGIPAKINLIPFNPWPGCEYL 327
            D   L +    LK + A ++++P++     +Y 
Sbjct: 180 PDLYRLGRFIGELKNVKA-LDVLPYHDMGKVKYE 212


>gi|307353972|ref|YP_003895023.1| Radical SAM domain-containing protein [Methanoplanus petrolearius
           DSM 11571]
 gi|307157205|gb|ADN36585.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 362

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 26/134 (19%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR-KISNI 182
           C+  C  C+T                         G+    ED +  V+P + + ++S +
Sbjct: 37  CNARCVHCFTS--------------------ADNQGETMTLEDFQDFVVPRLKQCRVSRV 76

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
            + G GEP     N+   + + S++     S    T +T      I  +  E  V + +S
Sbjct: 77  TLTG-GEPFL-HPNIIDFVKLLSNAD---ISVGICTNATVITTDQIQALSHERNVHINVS 131

Query: 243 LHAVSNDLRNILVP 256
           LH  S++  +  + 
Sbjct: 132 LHGFSSESHDKFMK 145


>gi|327399325|ref|YP_004340194.1| Radical SAM domain-containing protein [Hippea maritima DSM 10411]
 gi|327181954|gb|AEA34135.1| Radical SAM domain protein [Hippea maritima DSM 10411]
          Length = 319

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 64/187 (34%), Gaps = 25/187 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CS  C +C  G        T +      L             + E         KI  + 
Sbjct: 27  CSYRCIYCEVGK-------TTD------LSIERKSFFEVELIEKEFKDNIGKLGKIDFVT 73

Query: 184 MMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
             G GEP  N D   +   +       G  +    +T  +  +  ++ R  + +   + I
Sbjct: 74  FSGSGEPTLNKDIGRLIDFVK------GFGYRTAVLTNGSLLWREDVKR--DLLRADIVI 125

Query: 242 -SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
            SL A   D    +   +    L  +I     +   S + ++  E + ++G+NDS R+  
Sbjct: 126 PSLDAADEDSFKKINRPHPSLSLTKIIHGIADF-NHSFSGQMWLEILFVEGVNDSKRNVK 184

Query: 301 NLIKILK 307
            LI  +K
Sbjct: 185 ALIDAIK 191


>gi|110800078|ref|YP_696622.1| radical SAM domain-containing protein [Clostridium perfringens ATCC
           13124]
 gi|110674725|gb|ABG83712.1| radical SAM domain protein [Clostridium perfringens ATCC 13124]
          Length = 457

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 87/270 (32%), Gaps = 40/270 (14%)

Query: 50  FQGMSDISQ-----EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIE 104
           +  + + ++      +   L   + +   +   E          L       +      E
Sbjct: 31  YNMIDNDNKLSSKESLIEKLKDKYPVEEIKEAYED--------LLQLVEEDALYSGDLYE 82

Query: 105 TVYIPEK----SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
            V             LC++    C+L C +C+    +                 R  +  
Sbjct: 83  EVAKESDKAPSYIKALCLNVVHDCNLRCKYCFADEGEYKGC-------------RKPMSA 129

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITL 219
             G + I+ ++  S G K   + + G GEPL  FD +K+ +       G    K  R T+
Sbjct: 130 EVGKKAIDFVLANSGGIKNIEVDLFG-GEPLMVFDTIKEIIDY-GKKRGQEVGKNVRFTM 187

Query: 220 STSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
           +T+  + N  R+         ++L+I      ND   I V  +  Y  + ++   +    
Sbjct: 188 TTNATLLNDERIDYIDKNIGNIILSIDGRKEVNDAVRIRVDGSGSY--DRILPNIKKMVE 245

Query: 276 LSNARRITFEYVMLKGIN-DSPRDALNLIK 304
             +  +  +        N D  +D + L  
Sbjct: 246 KRDPSKQYYARGTFTRNNTDFFQDVMALAN 275


>gi|307707088|ref|ZP_07643885.1| hypothetical protein ydeM [Streptococcus mitis SK321]
 gi|307617614|gb|EFN96784.1| hypothetical protein ydeM [Streptococcus mitis SK321]
          Length = 423

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 62/186 (33%), Gaps = 19/186 (10%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           I +  I E    +L + + + C+LTCS+C+   +     L++E              D  
Sbjct: 53  IHSKRIVEGDELSLYIVTTMSCNLTCSYCFENDKDRKPFLSSE-------------YDGK 99

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
              +     +     K  +I   G GEPL NF  ++       + + +  S   IT  T 
Sbjct: 100 KIVNFILDELNFKKYKSLDICFTG-GEPLYNFQFIRNLCETLDEKLAIPISYTLITNGTI 158

Query: 223 GFVPNIARVGEE----IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
            F   I    +     I V      H  + +  N L        +  L      Y  LS 
Sbjct: 159 -FTNKIMSFLDCHNFAIQVSFDGDEHYHNLERCNRLGKGTYHRIINNLSVMLEKYKNLSI 217

Query: 279 ARRITF 284
             R+  
Sbjct: 218 QARVNI 223


>gi|224012289|ref|XP_002294797.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|224013668|ref|XP_002296498.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335]
 gi|220968850|gb|EED87194.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335]
 gi|220969236|gb|EED87577.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 247

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 74/211 (35%), Gaps = 23/211 (10%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GCS  C +C         N  A+ I+   L    +        D+       +      +
Sbjct: 25  GCSKRCIYCS--------NPDAQCIVD-PLKFPEVAISDEEVIDVLKRYELFLSPNSGGV 75

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-VPNIAR--VGEEIGVML 239
              G G+PL   D V  ++   +  +G   S     + T+G+  P I    +     VML
Sbjct: 76  TFSG-GDPLLQPDFV-NAVFEKAKDIG---SGLTTCIDTAGYGSPKIWDKCLPNTDYVML 130

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            I      +      +    K+  E   D  RH        +++  +V+LK + D+  + 
Sbjct: 131 CIKG---MDLKLASFISGVSKFQNECARDFARHIRDHYKNIKLSIRWVLLKDMTDTDEEL 187

Query: 300 LNLIKILKGI-PA--KINLIPFNPWPGCEYL 327
             L    K + P    + ++P++     +Y 
Sbjct: 188 EALAAFAKELSPVFTHVEVLPYHSLGVDKYR 218


>gi|146281690|ref|YP_001171843.1| FeMo cofactor biosynthesis protein NifB [Pseudomonas stutzeri
           A1501]
 gi|145569895|gb|ABP79001.1| FeMo cofactor biosynthesis protein NifB [Pseudomonas stutzeri
           A1501]
          Length = 447

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 72/210 (34%), Gaps = 33/210 (15%)

Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           C++ C +C          R     E+L             P     +   + +   +++ 
Sbjct: 9   CNIQCHYCNRKYDCANESRPGVVSELLE------------PVQAVKKVKAVAATIPQMTV 56

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239
           + + G G+PL N     ++  + S+         ++ +ST+G      +  + +     +
Sbjct: 57  LGIAGPGDPLANPQRTFETFRMLSEQA----PDIKLCVSTNGLALPDCVDELAKHNIDHV 112

Query: 240 AISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPGL------SNARRITFEYVML 289
            I+++ V  D+   + P     N++                           +    V++
Sbjct: 113 TITINCVDPDIGAEIYPWIYWNNKRIRGRKAAKILIERQQKGLEMLVERGILVKVNSVLI 172

Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPF 318
            G+ND       + +I+K   A + N++P 
Sbjct: 173 PGVND--EHLKEVSRIVKAKGAFLHNVMPL 200


>gi|327479938|gb|AEA83248.1| FeMo cofactor biosynthesis protein NifB [Pseudomonas stutzeri DSM
           4166]
          Length = 504

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 72/212 (33%), Gaps = 37/212 (17%)

Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           C++ C +C          R     E+L             P     +   + +   +++ 
Sbjct: 67  CNIQCHYCNRKYDCANESRPGVVSELLD------------PVQAVKKVKAVAATIPQMTV 114

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239
           + + G G+PL N     ++  + S+         ++ +ST+G      +  + +     +
Sbjct: 115 LGIAGPGDPLANPQRTFETFRMLSEQA----PDIKLCVSTNGLALPDCVDELAKHNIDHV 170

Query: 240 AISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            I+++ V  D+   + P               K  +E                 +    V
Sbjct: 171 TITINCVDPDIGAEIYPWIYWNNKRIRGRKAAKILIERQQQGLEMLVER--GILVKVNSV 228

Query: 288 MLKGINDSPRDALNLIKILKGIPAKI-NLIPF 318
           ++ G+ND       + +I+K   A + N++P 
Sbjct: 229 LIPGVND--EHLKEVSRIVKAKGAFLHNVMPL 258


>gi|293556778|ref|ZP_06675341.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1039]
 gi|291601110|gb|EFF31399.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1039]
          Length = 253

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 91/275 (33%), Gaps = 56/275 (20%)

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEIL 148
              + IG    IET    +       V  Q GC + C FC+   T      +  TA+E+L
Sbjct: 1   MEEKTIGYVHSIETFGSVDGPGLRFVVFMQ-GCRMRCQFCHNPDTWNIGGGKEYTADELL 59

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            +    R   GD  G                  I + G GEPL   D + +    A +  
Sbjct: 60  DKAERFRPYWGDKGG------------------ITVSG-GEPLLQIDFLIELFKKAKER- 99

Query: 209 GLSFSKRRITLSTSGFV-----PNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKY 261
                K   TL T G       P  +R  E +     L   +  + N+    L      +
Sbjct: 100 -----KMHTTLDTCGKPFTYEEPFFSRFQELMKYTDLLLFDIKHIDNEEHKKLT----HW 150

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN 319
             E +++  ++   ++    +   +V++   +D     + L   ++ +    ++ ++P++
Sbjct: 151 DNENILEMAQYLSKINK--PVWIRHVLVPERSDYDEYLIRLDNFIQTLSNVDRVEILPYH 208

Query: 320 PWPGCEY------------LCSDQKDIVTFSECIK 342
                ++                ++ +      + 
Sbjct: 209 TMGKYKWEILGLKYPLEGIEPPTKERVENAKRLLH 243


>gi|319946489|ref|ZP_08020725.1| pyruvate formate-lyase activating enzyme [Streptococcus australis
           ATCC 700641]
 gi|319747320|gb|EFV99577.1| pyruvate formate-lyase activating enzyme [Streptococcus australis
           ATCC 700641]
          Length = 264

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 87/256 (33%), Gaps = 66/256 (25%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +     + R  T +++L + L  R   G   G              
Sbjct: 37  GCQMRCQYCHNPDTWAMETNMSRERTVDDVLEEALRYRGFWGQKGG-------------- 82

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVG 232
               I + G GE L   D +   +++ + +  L       TL T           + +  
Sbjct: 83  ----ITVSG-GEALLQIDFL---IALFTKAQELGI---HCTLDTCALPFRNTPRYLEKFD 131

Query: 233 EEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
           + + V   + + +  ++++    +     K      I AC  Y      + +   +V++ 
Sbjct: 132 KLMAVTDLVLLDIKEINDERHRFVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVP 185

Query: 291 GINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDI-- 334
           G+ D   D + L K +K +    K  ++P++     ++                ++ +  
Sbjct: 186 GLTDRDDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWRELGIPYSLEGVKPPTKERVQN 245

Query: 335 -------VTFSECIKR 343
                   ++ + +KR
Sbjct: 246 AKNLMETESYQDYLKR 261


>gi|270292096|ref|ZP_06198311.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp. M143]
 gi|270279624|gb|EFA25466.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp. M143]
          Length = 264

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 35/214 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N     +                    E +           I
Sbjct: 37  GCHMRCQYCH--------NPDTWAM-----ETNKSRERTVDDVLTEALRYRGFWGDKGGI 83

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237
            + G GE L   D +    + A    G+       TL T           + +  + + V
Sbjct: 84  TVSG-GEALLQIDFLIAFFTKA-KEKGI-----HCTLDTCALPFRNTPRYLEKFNKLMAV 136

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              + + +  ++ +   I+     K      I AC  Y      + +   +V++ G+ D 
Sbjct: 137 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACARYLS-DIGKPVWIRHVLVPGLTDR 190

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             D + L K +K +    K  ++P++     ++ 
Sbjct: 191 DEDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224


>gi|87310727|ref|ZP_01092854.1| hypothetical protein DSM3645_06861 [Blastopirellula marina DSM
           3645]
 gi|87286484|gb|EAQ78391.1| hypothetical protein DSM3645_06861 [Blastopirellula marina DSM
           3645]
          Length = 432

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 20/179 (11%)

Query: 99  GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR----NLTAEEILLQV-LL 153
           G +++ T       R    V  Q GC L C+FC   T   VR    + ++EEI+ +V  L
Sbjct: 117 GVIDVPTGLSTFGDRHRAFVKVQDGCLLRCTFCIIPT---VRPEMYSRSSEEIIAEVARL 173

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
           A +   +        G       R  S    M +        ++ +SL+       +  S
Sbjct: 174 ADNGFREIVLTGIHLGHYGVDQNRGKSKAEWMRLA-------HLVRSLARLDGDFRIRMS 226

Query: 214 KRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND-LRNILVPINRKYPLEMLIDACR 271
               T  T   +  +    + +   L IS+ + S+  LR +     R++  +  +D C+
Sbjct: 227 SIEATEVTRELIEVMGEFPDRVCPHLHISMQSGSDSVLRRMR----RRWGAQRFVDRCK 281


>gi|329768807|ref|ZP_08260238.1| pyruvate formate-lyase 1-activating enzyme [Gemella sanguinis M325]
 gi|328839580|gb|EGF89155.1| pyruvate formate-lyase 1-activating enzyme [Gemella sanguinis M325]
          Length = 263

 Score = 40.6 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 70/242 (28%), Gaps = 43/242 (17%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+      + N  A+     V+    L  +     +                
Sbjct: 41  GCMLRCKYCHNPDTWKMHNPDAK-----VVTVSQLTNEIVKYRNFFEASEGGG------- 88

Query: 183 VMMGMGEPLCNFDNV------KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           V +  GE L   D V       K+L I +             ++T      I  +     
Sbjct: 89  VTVSGGESLLQLDFVLELFRQLKALDINTCVDTCG----GFYVNTPTMNEKILELISLTD 144

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + L + L  + ++    L     K     ++   R      N  ++   +V++    D  
Sbjct: 145 LFL-MDLKHIDDEQHIKLTKRTNKN----ILQFARFLSD--NGAKMWIRHVLVPKWTDDD 197

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
                L   +  +    ++ ++P++     +Y                +  I    + ++
Sbjct: 198 YYLQKLRDFIDTLNGVERVEVLPYHDMAKFKYKELGYEYELNDINPPTKDRIKNAIKILR 257

Query: 343 RS 344
             
Sbjct: 258 AR 259


>gi|227486778|ref|ZP_03917094.1| radical SAM domain protein [Anaerococcus lactolyticus ATCC 51172]
 gi|227235248|gb|EEI85263.1| radical SAM domain protein [Anaerococcus lactolyticus ATCC 51172]
          Length = 469

 Score = 40.6 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 72/218 (33%), Gaps = 27/218 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+ TC +C+    K       + I          +        I+ ++  S
Sbjct: 105 ALCLNVAHTCNFTCDYCFAKGGKYHG---PDAI----------MTKEVAKMAIDFLLENS 151

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFV---PNIAR 230
                 +I   G GEPL N + VK ++  A       +      TL+T+G +     I  
Sbjct: 152 GRHHNLDIDFFG-GEPLMNLNVVKYTVDYARSKEEEFN-KHFNFTLTTNGLLLNDDTIDY 209

Query: 231 VGEEIG-VMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
           + E +  V+L++       +  R  L         ++++   +        +        
Sbjct: 210 LNENMKNVVLSLDGRKDKHDHFRKTL---AGTGSFDLIVPKFQRLVEKRGDKGYYMRGTY 266

Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326
                D   D    + +  G   + +L P    P  EY
Sbjct: 267 TANNLDFTEDIKTYLDL--GFK-RTSLEPVVGSPDNEY 301


>gi|148654967|ref|YP_001275172.1| radical SAM domain-containing protein [Roseiflexus sp. RS-1]
 gi|148567077|gb|ABQ89222.1| Radical SAM domain protein [Roseiflexus sp. RS-1]
          Length = 320

 Score = 40.6 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 71/191 (37%), Gaps = 24/191 (12%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C +C        R LT E         R  +       ++E  +      +I  + 
Sbjct: 27  CNWNCVYC---QLGRTRPLTNE--------RRVYVPLPVILNELEQALANRAPDEIDWVT 75

Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           ++G GEP        + +++   +           + + T+G +  +  V  ++    A+
Sbjct: 76  IVGSGEPTLHSEIGELIRAIKRLT--------TLPLAVITNGALLYLPDVRADLCAADAV 127

Query: 242 --SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
             +L A S  +   L   + +   E L++    +       ++  E ++++G+NDS    
Sbjct: 128 MPTLSAGSASVYRALHRPHPETTFERLLEGLIAFRA-EYRGKLWVEVMLVRGVNDSEAAL 186

Query: 300 LNLIKILKGIP 310
            +L   L+ I 
Sbjct: 187 RDLASALQRIQ 197


>gi|212696379|ref|ZP_03304507.1| hypothetical protein ANHYDRO_00916 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325848830|ref|ZP_08170340.1| glycyl-radical enzyme activating protein family protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|212676657|gb|EEB36264.1| hypothetical protein ANHYDRO_00916 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325480474|gb|EGC83536.1| glycyl-radical enzyme activating protein family protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 320

 Score = 40.6 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 95/303 (31%), Gaps = 63/303 (20%)

Query: 90  LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT------ 143
           LR         ++ E   + +K+    C      C     +   G  K+ R++T      
Sbjct: 41  LRCKWCSNPEGLKSEYQVMIKKNACINCGQCVDVCPKKIHYMENGIHKVHRDITCIGCRR 100

Query: 144 --------AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195
                   A EI+ +      L+      +D   M    +             E L    
Sbjct: 101 CEKNCLQKAIEIVGEDKTITELMDIVKEDKDFYMMSGGGLTVGGGEC--SAQAESL---K 155

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255
           ++ ++    S   G++       + T G++P   +  + I   + I L  +       + 
Sbjct: 156 SLLEA----SHMDGIN-----TAIETCGYMP--RKSLDLIKDHVDIFLFDI-----KQMD 199

Query: 256 PINRKY----PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
           P+  KY      E ++   R+        R+     +LKG+NDS  + + ++  L+    
Sbjct: 200 PVKHKYWTGVNNERILSNLRYLLESGKKVRVRMP--ILKGVNDSHEEIMAVVDFLEDFKC 257

Query: 312 KIN-----LIPFNPWPGCEYLC-----S-----------DQKDIVTFSECIKRSGYSSP- 349
             N     L+P++ +   +Y                     + +    + I  +      
Sbjct: 258 FKNFDGIDLLPYHRYGVGKYEQLDMDYPMDSEMEGEFALSNEQLDAIQKWIDENKIEVNL 317

Query: 350 IRT 352
           +R 
Sbjct: 318 VRH 320


>gi|297618450|ref|YP_003703609.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297146287|gb|ADI03044.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 417

 Score = 40.6 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 68/201 (33%), Gaps = 23/201 (11%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
              R    + +   C+  C  C +                  +  +  L   P  E+I  
Sbjct: 180 FYERWEGGIPTSPACNAACIGCISEQHG------------DAVSPQDRLDFVPEVEEIVE 227

Query: 170 MVIPSVGRKISNIVMMGMG---EPLCNFDNVKKSLSIASDSMGLSFSKRRITLST-SGFV 225
           + +  + R    I+  G G   EP  N + + +++       G       I L+T +GF 
Sbjct: 228 VGVHHLARAREAIISFGQGCEGEPSLNHEILAEAVKAMRKRTGRG----TINLNTNAGFT 283

Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
             I ++ +     + +++ +   +    +    R + LE + ++ R+         ++  
Sbjct: 284 EGIKKIVDAGLDAMRVTIFSCRPEN-YAVYHRPRDFQLEDVEESIRY--ARKKGVYVSLN 340

Query: 286 YVMLKGINDSPRDALNLIKIL 306
            +   G  D   +   L+  +
Sbjct: 341 LLTFPGFTDREDEIRTLLDFV 361


>gi|154249660|ref|YP_001410485.1| radical SAM domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153596|gb|ABS60828.1| Radical SAM domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 600

 Score = 40.6 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 96/266 (36%), Gaps = 59/266 (22%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL-VRNLTAEEILLQVLLARSLLGDF 161
           +E+V      R  + +S   GC+  C FC+ G     VR  +A+EI+  V   + L+ + 
Sbjct: 251 VESV----HDRAVIEISR--GCTRGCRFCHAGYVYRPVRERSADEIVKSV---KKLIENT 301

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
              E     +      +IS I    + E                    +S S      ST
Sbjct: 302 GYDEVSLLSLSSLDHSQISEIAEKLVEE---------------LKDKKVSIS----IPST 342

Query: 222 SGFVPNIA---RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278
                NI    ++ E     L  +  A S  +R+ +   N++   + +I+        + 
Sbjct: 343 RVDAFNIKIGEKIAEVRKTGLTFAPEAGSQKMRDAI---NKQISYDDIINTASE-AKRAG 398

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIP--------AKIN-LIPFNPWPGCEYLCS 329
            RRI   Y M+    ++  D   + +++K I         A +N LIP    P   +   
Sbjct: 399 WRRIKL-YFMVGFPEETEEDIKEIGELIKDIKKLGFSDITASVNLLIP---KPHTAFQ-- 452

Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRG 355
                  F++ ++   Y S +R   G
Sbjct: 453 -------FAK-LQEPEYMSMVRKILG 470


>gi|18978000|ref|NP_579357.1| molybdenum cofactor biosynthesis protein A [Pyrococcus furiosus DSM
           3638]
 gi|18893779|gb|AAL81752.1| hypothetical protein PF1628 [Pyrococcus furiosus DSM 3638]
          Length = 419

 Score = 40.6 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 78/207 (37%), Gaps = 25/207 (12%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           + ++    + V    GC+L+C FC        R    + ++    L +    D+   E  
Sbjct: 109 LIDRGTNLIQVRGSTGCNLSCIFCSVDEGPYSRTRNLDFVVDVDYLMKWF--DWVAKEKG 166

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-- 225
           +G+             +   GEPL  +  + + +        +S     I++ ++G +  
Sbjct: 167 KGLEAH----------LDAQGEPLL-YPYIVELVQELRSHPHVSV----ISMQSNGVLLD 211

Query: 226 -PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
              +  + E     + +S+H++  +   +L+   + Y L  +++             +  
Sbjct: 212 EKLVEELAEAGLDRVNLSIHSLDPEKAKMLM-GMKNYDLNHVLEMAEALVNA--GIDVLI 268

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPA 311
             V++ GIND+   A   I+  + I A
Sbjct: 269 APVIIFGINDNE--AEAFIEFARRIGA 293


>gi|222152595|ref|YP_002561770.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis
           0140J]
 gi|222113406|emb|CAR41070.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis
           0140J]
          Length = 263

 Score = 40.6 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 70/237 (29%), Gaps = 51/237 (21%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E+                    E +       K   I
Sbjct: 35  GCKMRCQYCH--------NPDTWEM-----ETNKSRERTVSDVLKEALQYRHFWGKNGGI 81

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN--------IARVGEE 234
            + G GE +   D    +L I +  +G+       TL T GF           + ++   
Sbjct: 82  TVSG-GEAMLQID-FITALFIEAKKLGI-----HTTLDTCGFAYRPTPEYHQILDKLLAV 134

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               L +      ++ ++ +V       + +      HY        +   +V++ G+ D
Sbjct: 135 TD--LILLDLKEIDEEQHKIVTRQPNKNILLF----AHYLS-DKGIPVWIRHVLVPGLTD 187

Query: 295 SPRDALNLIKI---LKGIPAKINLIPFNPWPGCEY------------LCSDQKDIVT 336
                  L      LK +  K  ++P++     ++                ++ +  
Sbjct: 188 IDEHLERLGDFVAKLKNVD-KFEILPYHTMGEFKWRELGIPYPLEGVKPPTKERVQN 243


>gi|20090379|ref|NP_616454.1| hypothetical protein MA1520 [Methanosarcina acetivorans C2A]
 gi|19915387|gb|AAM04934.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 219

 Score = 40.6 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 60/184 (32%), Gaps = 25/184 (13%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           I  ++   L ++    CS  C FC       +RN         V      L   P  E+I
Sbjct: 15  IYYEAHNNLYLNLTNRCSADCVFC-------IRNFADG-----VYGYDLRLSKEPTTEEI 62

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
              +          +V  G+GEP   FD V           G+     R+ L T+G    
Sbjct: 63  LEALEGLDLSNYREVVFTGLGEPTLRFDVVLAVTRWLKS-RGI-----RVRLDTNGHAAL 116

Query: 228 IA-------RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
           I         +       +++SL+A S +  N L     K     ++D  +         
Sbjct: 117 INPELDVVSELKNAGMDFISVSLNAESEEKYNKLCRPVHKNAYREILDFVKKAGEAGIPT 176

Query: 281 RITF 284
           R+T 
Sbjct: 177 RVTV 180


>gi|161505162|ref|YP_001572274.1| hypothetical protein SARI_03299 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866509|gb|ABX23132.1| hypothetical protein SARI_03299 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 342

 Score = 40.6 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 88/304 (28%), Gaps = 69/304 (22%)

Query: 13  MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72
             +EL   L      + + ++R  Q  + ++   +          +     + +  +   
Sbjct: 25  NPDELLHLL----QIEANEKLRAGQDARHLFALRV---------PRAFIARM-EKGNPDD 70

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVE-----IETVYIPEKSRGTLCVSSQVGCSLT 127
           P +     S D                P+E     +  +    ++R  L V    GC++ 
Sbjct: 71  PLLRQVLTSQD-----EFIVAPGFSTDPLEEQHSVVPGLLHKYQNRALLLVKG--GCAVN 123

Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           C +C        R+    E                       +   +   ++  I+  G 
Sbjct: 124 CRYC------FRRHFPYAE------------NQGNKRNWKVALEYIAAHPELDEIIFSG- 164

Query: 188 GEPL----CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           G+PL       D +   L        L     R+ +               I   +   L
Sbjct: 165 GDPLMAKDHELDWLLTQLEAIKHVKRLRI-HSRLPV--------------VIPARITNEL 209

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF--EYVMLKGINDSPRDALN 301
            A  +  R  ++ +N       + +A            +T   + V+L+G+ND+   A  
Sbjct: 210 VARFDQSRLQILLVNHTNHANEVDEAFCLAMKKLRRVGVTLLNQSVLLRGVNDN---AKT 266

Query: 302 LIKI 305
           L  +
Sbjct: 267 LANL 270


>gi|291543729|emb|CBL16838.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus sp. 18P13]
          Length = 241

 Score = 40.6 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 32/209 (15%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N    E        +         + +E +           +
Sbjct: 28  GCPLRCLYCH--------NPDTWE--------QKQTLCMTPPQVMEKIRSERSFLLRGGV 71

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA-RVGEEIGVMLAI 241
            + G GEPL       + L       G         + TSG +P    R   ++  ML +
Sbjct: 72  TLSG-GEPLM-QPAFCEELLTLCRQEGF-----HTAIDTSGSIPLSQSRHAIDLANMLLL 124

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
            +  +  +    L     +  L   +D C         + +   +V++ G   +P     
Sbjct: 125 DIKDIDPEDCRTLTGKTNENALA-TLDHCEQ-----TGKEVWIRHVLVPGYTLNPDKLRR 178

Query: 302 LIKILKGIPA--KINLIPFNPWPGCEYLC 328
           L + L G     ++ L+P++     ++  
Sbjct: 179 LAEKLSGYRCVKRVELLPYHTMGLYKWEA 207


>gi|229816492|ref|ZP_04446791.1| hypothetical protein COLINT_03544 [Collinsella intestinalis DSM
           13280]
 gi|229807827|gb|EEP43630.1| hypothetical protein COLINT_03544 [Collinsella intestinalis DSM
           13280]
          Length = 272

 Score = 40.6 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 78/241 (32%), Gaps = 34/241 (14%)

Query: 96  CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
            +G    IE++   +       V +Q GC + C++C+          T  E     +   
Sbjct: 17  ALGRIHSIESMGTVDGPGVRFVVFTQ-GCPMRCAYCHNPDT-----WTTGEGAGTCVSVE 70

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
            LLG++                +   + + G GEPL   + V     + + +      + 
Sbjct: 71  RLLGEYESNRPF---------YRTGGLTVTG-GEPLLQPEFVGD---LFAAAHAAPAGRI 117

Query: 216 RITLSTSGF------VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
              L + G+           ++  E   M+ + +          L         + +I  
Sbjct: 118 HTCLDSCGYAYNPKKPERFEKLLSETD-MVLLDIKHSDPVGHKALT----GCEPDRIIAF 172

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL--IPFNPWPGCEYL 327
                      ++   +V++ GI D+  +   L +++      + L  +P++     +Y 
Sbjct: 173 GDELARR--KIKVVIRHVVVPGITDTEEECEALGRLIAPWHNVVGLEMLPYHTMGIVKYE 230

Query: 328 C 328
            
Sbjct: 231 Q 231


>gi|330507069|ref|YP_004383497.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328927877|gb|AEB67679.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 302

 Score = 40.6 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 83/241 (34%), Gaps = 45/241 (18%)

Query: 124 CSLTCSFCYTGTQKLVR-----NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           C++ C +C       +R     N +   +  QVL         P         +      
Sbjct: 51  CNIQCKYC-------IRDFDCVNESRPGVTSQVL--------KPKEALERVDQVLEKYHY 95

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIG 236
           I  + + G GEPL N +   ++L +  +          + LST+G      I  +     
Sbjct: 96  IKVVAVAGPGEPLFN-EETFETLRMVGEKY----PNIILCLSTNGLLLPDKIQELDRLGV 150

Query: 237 VMLAISLHAVSNDLRNILVPI----NRKY-PLEMLIDACRHYPG-----LSNARRITFEY 286
             + ++L+A+   +   +        ++Y  LE     C          +   + +    
Sbjct: 151 CNITVTLNAIDPQIGQHIYDYVNYEGKRYEGLEAATLLCNQQLKGIEEAVRLKKIVKINT 210

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTFSECIK 342
           V++ GIND     +++   +K +   I N++P    P  ++        ++     + + 
Sbjct: 211 VIIPGINDL--HIIDIAHKIKSMGVFIHNVMPL--IPQYKFAHIKPPSPEEKRKIQDELG 266

Query: 343 R 343
           +
Sbjct: 267 K 267


>gi|291565978|dbj|BAI88250.1| pyruvate formate-lyase activating enzyme [Arthrospira platensis
           NIES-39]
          Length = 255

 Score = 40.6 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 87/250 (34%), Gaps = 60/250 (24%)

Query: 123 GCSLTCSFCYTGTQKLV---RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC L C +C+    + V   + +T EEI+ +V+  RS +    G   + G          
Sbjct: 40  GCPLRCLYCHNPDCQEVAGGKQVTVEEIIQEVVKYRSYMRFSNGGITVTG---------- 89

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
                   GEPL   + V     I      L        L TSG++P          + +
Sbjct: 90  --------GEPLMQPEFVA---EIFRRCRELGI---HTALDTSGYIP----------INV 125

Query: 240 AISLHAVSNDLRNILV-PINRKY------PLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           A  +   ++ +   +    +  Y       +E  ++  ++   ++    + F  V++  +
Sbjct: 126 AKPVLDYTDLVLLDIKSYHSETYRKVTCVSVEPTLNFAKYLHEINKPTWVRF--VLVPNL 183

Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFS 338
            +   +   L K + G     K+ ++PF+     ++                 +++ T  
Sbjct: 184 TNDINNMEALAKFVSGFSNVEKVEILPFHKMGEYKWEQIGYEYKLKDTEEPTPEEVSTAI 243

Query: 339 ECIKRSGYSS 348
              ++ G + 
Sbjct: 244 NIFQKYGLAV 253


>gi|284051128|ref|ZP_06381338.1| pyruvate formate-lyase activating enzyme [Arthrospira platensis
           str. Paraca]
          Length = 249

 Score = 40.6 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 87/250 (34%), Gaps = 60/250 (24%)

Query: 123 GCSLTCSFCYTGTQKLV---RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC L C +C+    + V   + +T EEI+ +V+  RS +    G   + G          
Sbjct: 34  GCPLRCLYCHNPDCQEVAGGKQVTVEEIIQEVVKYRSYMRFSNGGITVTG---------- 83

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
                   GEPL   + V     I      L        L TSG++P          + +
Sbjct: 84  --------GEPLMQPEFVA---EIFRRCRELGI---HTALDTSGYIP----------INV 119

Query: 240 AISLHAVSNDLRNILV-PINRKY------PLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           A  +   ++ +   +    +  Y       +E  ++  ++   ++    + F  V++  +
Sbjct: 120 AKPVLDYTDLVLLDIKSYHSETYRKVTCVSVEPTLNFAKYLHEINKPTWVRF--VLVPNL 177

Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFS 338
            +   +   L K + G     K+ ++PF+     ++                 +++ T  
Sbjct: 178 TNDINNMEALAKFVSGFSNVEKVEILPFHKMGEYKWEQIGYEYKLKDTEEPTPEEVSTAI 237

Query: 339 ECIKRSGYSS 348
              ++ G + 
Sbjct: 238 NIFQKYGLAV 247


>gi|206889617|ref|YP_002249501.1| nitrogen fixation protein [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741555|gb|ACI20612.1| nitrogen fixation protein [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 293

 Score = 40.6 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 87/251 (34%), Gaps = 49/251 (19%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS--LLGDFPGCEDIEGMVIPSVGRKISN 181
           C+++C++C        RN         V  +R           E ++ +++ +   +IS 
Sbjct: 36  CNISCNYC-------NRN------YDCVNESRPGVSSRIITPLEALKRVLVATERDRISV 82

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239
           I + G G+PL N ++      +        F    + LST+G      +  + +     +
Sbjct: 83  IGVAGPGDPLAN-ESTFNFFKLVRKE----FPNIFLCLSTNGLLLPKKVEVLQDLGIFTV 137

Query: 240 AISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYV 287
            ++++A++      +                 +Y LE   +             +    V
Sbjct: 138 TVTINAINPSTAEKIYAWILYDGKLMKGREASEYLLENQWNGLEMLTDR--GFCVKVNSV 195

Query: 288 MLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPG---CEYLCSDQKDIVTFSECIKR 343
           ++ G+N+      N+ +  + + AK+ N+IP    P            + +    +  ++
Sbjct: 196 LIPGVNERE--IENIAERARRLKAKVMNIIPL--IPNGKMINLQKPSCQVLEDIRKVCEK 251

Query: 344 SGYSSPIRTPR 354
                 IR  R
Sbjct: 252 H-----IRQIR 257


>gi|195953319|ref|YP_002121609.1| nitrogenase cofactor biosynthesis protein NifB [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195932931|gb|ACG57631.1| nitrogenase cofactor biosynthesis protein NifB [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 469

 Score = 40.6 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 86/219 (39%), Gaps = 31/219 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C++C         N +   ++ ++L         P     + + +     ++S + 
Sbjct: 51  CNIQCNYCNRKYD--CANESRPGVVSELLT--------PEEAAKKVLAVAMEIPQLSVVG 100

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-----FVPNIARVGEEIGVM 238
           + G G+PL N +   ++  +  +         ++ LST+G     +V  I  + +   V 
Sbjct: 101 IAGPGDPLANPERTFRTFELIKEKA----PDIKLCLSTNGLVLDKYVDKIKEL-DVDHVT 155

Query: 239 LAISLHAVSNDLRN--ILVPINRKYPLEMLIDAC--RHYPGL----SNARRITFEYVMLK 290
           + ++  +V    R    +   +++Y  +        + Y GL     N   +    V + 
Sbjct: 156 VTVNAVSVDTASRIYPWVFYNHKRYKGKEAAAILLEKQYEGLQACVENGILVKVNTVFVP 215

Query: 291 GINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYLC 328
            IN    + L+L K +K I A + N++P+    G  +  
Sbjct: 216 EING--DEILDLSKKVKSIEAFLHNIMPYVEGDGTAFQK 252


>gi|91070512|gb|ABE11419.1| putative organic radical activating enzyme [uncultured
           Prochlorococcus marinus clone HOT0M-3E5]
          Length = 225

 Score = 40.6 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 27/119 (22%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTG---TQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
             +  +       GC + CS+C T     +K   +++ E+I+ ++ +AR     F     
Sbjct: 21  YHAGKSAFFIRLAGCKVGCSWCDTKNSWDEKKHPSISIEKIIDRIKIARKKGASF----- 75

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPL-CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
                           V+ G GEPL  N DN  K++   +  MG      +I + TSG 
Sbjct: 76  ---------------CVITG-GEPLQHNLDNFCKAIKKMT--MGEEQKPMKIHIETSGV 116


>gi|187933399|ref|YP_001885920.1| glycyl-radical enzyme activating protein family [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721552|gb|ACD22773.1| glycyl-radical enzyme activating protein family [Clostridium
           botulinum B str. Eklund 17B]
          Length = 313

 Score = 40.6 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/100 (9%), Positives = 34/100 (34%), Gaps = 13/100 (13%)

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWP 322
           ++++   +     +   R+     ++   ND+  +A+     +  +    INL+PF+   
Sbjct: 208 DLILKNIKELINCNWQGRLVIRMPVIHNFNDTVENAMATADFMNDLGIYEINLLPFHRMG 267

Query: 323 GCEY------------LCSDQKDIVTFSECIKRSGYSSPI 350
             ++              + ++ +    +       +  +
Sbjct: 268 DSKWTQLGKKYSYRNDEPTSEEKLDELQDVYLDRKIACYV 307


>gi|322391329|ref|ZP_08064799.1| pyruvate formate-lyase activating enzyme [Streptococcus peroris
           ATCC 700780]
 gi|321145755|gb|EFX41146.1| pyruvate formate-lyase activating enzyme [Streptococcus peroris
           ATCC 700780]
          Length = 264

 Score = 40.6 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 84/247 (34%), Gaps = 58/247 (23%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +       R  T +++L + L  R   GD  G              
Sbjct: 37  GCQMRCQYCHNPDTWAMETNKSRVRTVDDVLEEALRYRGFWGDKGG-------------- 82

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVG 232
               I + G GE L   D +  +L   +   G+       TL T           + +  
Sbjct: 83  ----ITVSG-GEALLQIDFLI-ALFTKAKEKGI-----HCTLDTCALPFRNKPRYLEKFD 131

Query: 233 EEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
           + + V   + + +  +++    I+   + K      I AC  Y      + +   +V++ 
Sbjct: 132 KLMAVTDLVLLDIKEINDAQHRIVTSQSNK-----TILACAQYLS-DIGKPVWIRHVLVP 185

Query: 291 GINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVT 336
           G+ D   D + L K +K +    K  ++P++     ++                ++ +  
Sbjct: 186 GLTDRDEDLIELGKFVKTLKNVDKFEILPYHTMGEFKWRELGIPYSLEGVKPPTKERVKN 245

Query: 337 FSECIKR 343
            ++ +  
Sbjct: 246 -AKELMD 251


>gi|255526666|ref|ZP_05393571.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296187171|ref|ZP_06855568.1| radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|255509646|gb|EET85981.1| Radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|296048206|gb|EFG87643.1| radical SAM domain protein [Clostridium carboxidivorans P7]
          Length = 454

 Score = 40.6 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 69/197 (35%), Gaps = 25/197 (12%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLV--RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
            LC++    C+L C +C+         R L + EI                 + I+ ++ 
Sbjct: 96  ALCLNVAHDCNLRCKYCFADEGDYKGCRELMSAEI---------------AKKAIDFVIK 140

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV- 231
            S  RK   +   G GEPL  F+ +K+ +    +   +     R T++T+  + N   + 
Sbjct: 141 KSGPRKNIEVDWFG-GEPLMAFNVIKEVMEYTKEQEKIHNKNIRFTMTTNATLLNDEIMD 199

Query: 232 ---GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
                   ++L+I      ND   + V     Y  + ++   +    + +  +  +    
Sbjct: 200 YLDKNMGNIILSIDGRKEVNDKVRVRVDGTGSY--DSILPKIKKMVEMRDKSKQYYARGT 257

Query: 289 LKGIN-DSPRDALNLIK 304
               N D   D   +  
Sbjct: 258 FTRWNTDFFEDIKFMAD 274


>gi|225568673|ref|ZP_03777698.1| hypothetical protein CLOHYLEM_04751 [Clostridium hylemonae DSM
           15053]
 gi|225162515|gb|EEG75134.1| hypothetical protein CLOHYLEM_04751 [Clostridium hylemonae DSM
           15053]
          Length = 226

 Score = 40.6 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 64/200 (32%), Gaps = 34/200 (17%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C++C+                      +   G+    +++ G +        +  
Sbjct: 17  GCPLRCAYCHNPD-----------------TWKFEAGEEFSPQEVAGKIRRYRPYLTNGG 59

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V +  GEPL   +   +   I     G       +  S  G +    RV     ++LA  
Sbjct: 60  VTVTGGEPLMQPEFTAELFRIL-KEEGF---HTALDTSGIGNLQLAERVLAYTDLVLADV 115

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA--RRITFEYVMLKGINDSPRDAL 300
                 + R        +Y      +    +  L+      +    V++ GIND+     
Sbjct: 116 KFLTEEEYR--------RYCRADFRE-VTAFLDLTKKLGIPLWIRRVLVPGINDTEEHIK 166

Query: 301 NLIKILKGIPA--KINLIPF 318
            L+  L   P   KI L+PF
Sbjct: 167 KLVDFLTKYPNVEKIELLPF 186


>gi|118444986|ref|YP_878968.1| pyruvate formate-lyase [Clostridium novyi NT]
 gi|118135442|gb|ABK62486.1| pyruvate formate-lyase [Clostridium novyi NT]
          Length = 299

 Score = 40.6 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 14/86 (16%)

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEY---------- 326
              I     ++ G+ND   +  N  K    +     +NL+P++     +Y          
Sbjct: 212 GVPIVIRVPVIPGVNDDEENIRNTAKFAMSLNGVKEVNLLPYHRLGENKYDYLGYEYKMK 271

Query: 327 --LCSDQKDIVTFSECIKRSGYSSPI 350
                   +I      +++ G +  I
Sbjct: 272 DLEVPGDDNINKLKSIVEQYGLNCKI 297


>gi|224548902|dbj|BAH24183.1| NifB protein [Paenibacillus abekawaensis]
          Length = 458

 Score = 40.6 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 90/249 (36%), Gaps = 46/249 (18%)

Query: 124 CSLTCSFCYTGTQKLVR-----NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           C++ C++C        R     N +   ++ +VL  +       G        + +   +
Sbjct: 41  CNIQCNYC-------NRKFDCVNESRPGVVSEVLTPQQAERKVKG--------VAAQLMQ 85

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEEI 235
           +S + + G G+PL N +    + +   +    + L  S   +TL    +V  I  +G   
Sbjct: 86  LSVVGIAGPGDPLANPEATFDTFARVKEHVPDVSLCLSTNGLTLYR--YVDEIVELGIR- 142

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLE-MLIDACRHYPGL---------SNARRITFE 285
              + I+++A+  D+   + P      +     +A                     +   
Sbjct: 143 --HVTITINAIDPDVGREIYPWAVDEGIRYEGREAAELLITRQLLGVEMLAKRGILVKVN 200

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY-----LCSDQKDIVTFSE 339
            +M+ G+ND     + + K +K + A + N+ P    PG +Y          K++ T  E
Sbjct: 201 SIMIPGVNDH--HLVAVSKKVKELGATLHNVTPLIIAPGSQYEKDGRKAPRPKELHTVQE 258

Query: 340 CIKRSGYSS 348
            + R G   
Sbjct: 259 QLGRDGMKV 267


>gi|298506217|gb|ADI84940.1| glycerol dehydratase-activating enzyme, putative [Geobacter
           sulfurreducens KN400]
          Length = 298

 Score = 40.3 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 28/86 (32%), Gaps = 14/86 (16%)

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC-------- 328
              I     ++ G+ND   +      +    P    +NL+P++     +           
Sbjct: 211 HDTIWIRIPIIPGVNDDRANLEATAALAARTPGVRQVNLLPYHRTWHGKLRQLGRAGADD 270

Query: 329 ----SDQKDIVTFSECIKRSGYSSPI 350
                 ++ +   +   + +G ++ I
Sbjct: 271 AIATPSRERMEELARIFRAAGLTTII 296


>gi|206603542|gb|EDZ40022.1| Putative radical SAM family protein [Leptospirillum sp. Group II
           '5-way CG']
          Length = 530

 Score = 40.3 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 27/195 (13%)

Query: 99  GPVEIETVY--IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR--NLTAEEILLQVLLA 154
               +E+V+       R  + + ++ GC   CSFC     +  R      E+I+ +    
Sbjct: 232 DLRYLESVFEGHEFYHRTMVGIQTKRGCPYGCSFCLYTYIEGKRVYYRDPEDIVNE---M 288

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
           R     +              G       +  + E +     + K+L       G+  S 
Sbjct: 289 RQYYDQWGIRNFWFADAQFIPG-------VKAIPEAMD----LLKALR----DSGMKISW 333

Query: 215 RRITLSTSGFVPNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
               + TS   P +A++  E G+  L +S+ + S ++ + L      + L+ L++ CR+ 
Sbjct: 334 SGY-IRTSLISPEMAKLMVESGMGDLEVSVTSGSQEILDSLR---MGFRLDQLVEGCRNL 389

Query: 274 PGLSNARRITFEYVM 288
                   I   Y +
Sbjct: 390 RDAGYKGNIILNYSL 404


>gi|39997200|ref|NP_953151.1| pyruvate formate-lyase-activating enzyme [Geobacter sulfurreducens
           PCA]
 gi|39984090|gb|AAR35478.1| pyruvate formate-lyase-activating enzyme, putative [Geobacter
           sulfurreducens PCA]
          Length = 298

 Score = 40.3 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 27/86 (31%), Gaps = 14/86 (16%)

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC-------- 328
              I     ++ G+ND   +      +    P    +NL+P++     +           
Sbjct: 211 HDTIWIRIPIIPGVNDDRANLEATAALAARTPGVRQVNLLPYHRTWHGKLRQLGRAGADD 270

Query: 329 ----SDQKDIVTFSECIKRSGYSSPI 350
                 ++ +       + +G ++ I
Sbjct: 271 AIATPSRERMEELVRIFRAAGLTTII 296


>gi|124485405|ref|YP_001030021.1| hypothetical protein Mlab_0580 [Methanocorpusculum labreanum Z]
 gi|124362946|gb|ABN06754.1| MiaB-like tRNA modifying enzyme [Methanocorpusculum labreanum Z]
          Length = 416

 Score = 40.3 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 84/246 (34%), Gaps = 32/246 (13%)

Query: 91  RFPARCIGGPVEIETVYIPEKS---RGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEE 146
           R+P   I  P  I + Y+   +        +    GC+  C++C T      + + +AE+
Sbjct: 99  RYPKIHIIDPALIHSCYMEVGTAHVGTNAVLQIARGCNGHCTYCITRLARGKLVSFSAED 158

Query: 147 ILLQ---VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203
           I+ Q   ++ A +        +     +  + G ++ +               + + L  
Sbjct: 159 IVRQAKSIVEAGATEIQLTAQDTSSWGLDRNDGLRLPD---------------LLRQLCA 203

Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVP-INRKY 261
              +  +              +P +    + +    + + LH       + ++  + R+Y
Sbjct: 204 IPGNFMIRIGMANPD----TLLPILDDFLDALKDPKIFLFLHIPVQSGSDSVLRLMGRRY 259

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVM-LKGINDSPRDALNLIKILKG-IPAKINLIPFN 319
                 + C+         RI+ +Y+    G  D   DA    + ++   P K+N+  F+
Sbjct: 260 TSAQYEEICQRARKAFPEIRISTDYIAGFSGETD--EDAAKSAEQIRRTRPGKVNITRFS 317

Query: 320 PWPGCE 325
             P   
Sbjct: 318 VRPNTP 323


>gi|303240146|ref|ZP_07326666.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592237|gb|EFL61965.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 359

 Score = 40.3 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 21/119 (17%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C +C+   Q                  +     +   E +   V  +    + ++
Sbjct: 39  GCNIHCEYCFGSLQGN--------------HYKGGKDSYFQKEALLRYVKDAGEIGVRSM 84

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
             +G GEPL N  +V +++ +     G+  S     L T+G + +    G E    L  
Sbjct: 85  AFIGEGEPLLN-PHVYEAI-VLGKKSGVDIS-----LGTNGILYDTGEAGVEALKHLTW 136


>gi|260888273|ref|ZP_05899536.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|330838395|ref|YP_004412975.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|260861809|gb|EEX76309.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746159|gb|AEB99515.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185]
          Length = 467

 Score = 40.3 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 23/147 (15%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172
           +LC+     C+L C +C+       + R + + E+               GC  ++ ++ 
Sbjct: 94  SLCLMVAQDCNLRCKYCFGDGGNYGMERAVMSPEV---------------GCRAVDFLIE 138

Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIAR 230
            S  RK   I   G GEPL N   +KK           +    ++TL+T+G +       
Sbjct: 139 GSGPRKHCEIDFFG-GEPLLNMKTIKKVTEHIRKREKETGKIFKLTLTTNGMLLSDANIA 197

Query: 231 VGEEIGVMLAISL---HAVSNDLRNIL 254
              E    L +SL      ++ +R  +
Sbjct: 198 WLNENDFSLVLSLDGRRETNDAMRPDI 224


>gi|197121896|ref|YP_002133847.1| radical SAM protein [Anaeromyxobacter sp. K]
 gi|196171745|gb|ACG72718.1| Radical SAM domain protein [Anaeromyxobacter sp. K]
          Length = 446

 Score = 40.3 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 69/209 (33%), Gaps = 33/209 (15%)

Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQ---------KLVRNLTAEEILLQVLLARSLLGDFPG 163
           R    + S   C+  C  C +            ++ R  TA E+    +  R L      
Sbjct: 186 RDEGAIPSSAACNAACVGCLSEQDEGMPPSSHERIARPPTAAEMAD--VAVRHLERATGR 243

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
                G                  GEPL  +  ++K++ +          +  +  +T+G
Sbjct: 244 VMVSFGQGCE--------------GEPLLRWKEIEKAIRLIRART----RRGTLHANTNG 285

Query: 224 FVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
            +P  +AR+       + ISL++ S DL          Y LE ++   R     +    +
Sbjct: 286 SLPEALARLVAAGLESVRISLNSASPDLYAAYYRPT-GYGLEDVVRGVR--AAKAGGAYV 342

Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPA 311
               +   G+ D   +A  L +++     
Sbjct: 343 ALNLLTFPGVTDRGGEAERLCRLVADTGV 371


>gi|126697727|ref|YP_001086624.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile 630]
 gi|122974232|sp|Q18CP3|HPDA_CLOD6 RecName: Full=4-hydroxyphenylacetate decarboxylase activating
           enzyme; Short=Hpd-AE
 gi|115249164|emb|CAJ66975.1| putative 4-hydroxyphenylacetate decarboxylase,activating subunit
           HpdA; putative glycyl-radical activating family protein
           [Clostridium difficile]
          Length = 316

 Score = 40.3 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 23/187 (12%)

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           R    +   G GEPL   + +     +      ++     I  S         ++  +I 
Sbjct: 134 RSNGGVTFSG-GEPLLQHEFL---HEVLLKCHEVNI-HTAIETSACVSNEVFNKIFNDID 188

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
                  H      R         Y  +++++   +        R+     ++ G NDS 
Sbjct: 189 FAFIDIKHM----DREKHKEQTGVYN-DLILENISNLANSDWNGRLVLRVPVISGFNDSD 243

Query: 297 RDALNLIKIL-KGIPAKINLIPFNPWPGC-------EYLCSDQKDI-----VTFSECIKR 343
            +  ++I  + K    +INL+PF+            EY  SD+ D+         +    
Sbjct: 244 ENISDIISFMHKNNLVEINLLPFHRLGESKWTQLGKEYEYSDKGDVDEGHLEELQDIFLD 303

Query: 344 SGYSSPI 350
           +G +  +
Sbjct: 304 NGIACYV 310


>gi|145631298|ref|ZP_01787070.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           R3021]
 gi|144983083|gb|EDJ90583.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           R3021]
          Length = 180

 Score = 40.3 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL-- 327
            Y    N       YV++ G  DS  D   L + ++G+    K+ L+P++     ++   
Sbjct: 89  KYLQKRNQH-TWIRYVVVPGYTDSDHDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTL 147

Query: 328 ----------CSDQKDIVTFSECIKRSGYSS 348
                        ++ +      ++  G++ 
Sbjct: 148 GLDYELEDVLPPTKESLEHIKTILEGYGHTV 178


>gi|257470672|ref|ZP_05634762.1| pyruvate-formate lyase-activating enzyme [Fusobacterium ulcerans
           ATCC 49185]
 gi|317064878|ref|ZP_07929363.1| pyruvate-formate lyase-activating enzyme [Fusobacterium ulcerans
           ATCC 49185]
 gi|313690554|gb|EFS27389.1| pyruvate-formate lyase-activating enzyme [Fusobacterium ulcerans
           ATCC 49185]
          Length = 243

 Score = 40.3 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 76/209 (36%), Gaps = 32/209 (15%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C FC+        N++ E+I             F      +G      G  ++  
Sbjct: 29  GCPLRCKFCHNPD---TWNMSEEKIKE------EATETFEKVRKYKGYFGKKGGLTVTG- 78

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
                GEPL   D V +         G++       + TSG++    +  V E   ++L 
Sbjct: 79  -----GEPLLQADFVLELFK-LCKEDGIN-----TVVDTSGYIFNEKVKEVLEYTDLVL- 126

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + + A+   +   L  +     LE  +   ++       +++   +V++  I D  +   
Sbjct: 127 LDIKAIDEKVYKELTGVE----LENTLKFAQYLKEK--GKKVWIRHVVVPRITDDDKLLN 180

Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYL 327
            L + +  +    K+ L+P++     +Y 
Sbjct: 181 RLAEYVSALGNVEKVELLPYHRLGEFKYK 209


>gi|303233512|ref|ZP_07320175.1| radical SAM domain protein [Finegoldia magna BVS033A4]
 gi|302495412|gb|EFL55155.1| radical SAM domain protein [Finegoldia magna BVS033A4]
          Length = 447

 Score = 40.3 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 69/206 (33%), Gaps = 41/206 (19%)

Query: 51  QGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE 110
           + +    + ++     +F +            D   K++     +     V+       +
Sbjct: 47  EDIGKYPK-LKEFCEDNFILKT----------DDNIKYIKEIYNKSFEKKVK------SD 89

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170
            +  TL +S +  C+L C +CY G     +N    E+                       
Sbjct: 90  LNGMTLMISQK--CNLKCRYCY-GDGGEYQN--RGEMT------------LDTAIKALNF 132

Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNI 228
           ++    RK   I   G GEPL NF+ +K  +     + + G       +T + +    NI
Sbjct: 133 MLNFTKRKDLYICFFG-GEPLMNFNLIKGFIEYMEHNSNFGREI-HYSMTTNLTLLNENI 190

Query: 229 ARVGEEIGVMLAISLHA---VSNDLR 251
            R   +  + L +SL      ++  R
Sbjct: 191 KRFINDKNISLTVSLDGDKISNDSNR 216


>gi|228989633|ref|ZP_04149617.1| hypothetical protein bpmyx0001_4050 [Bacillus pseudomycoides DSM
           12442]
 gi|228995821|ref|ZP_04155480.1| hypothetical protein bmyco0003_4180 [Bacillus mycoides Rock3-17]
 gi|229003440|ref|ZP_04161260.1| hypothetical protein bmyco0002_4150 [Bacillus mycoides Rock1-4]
 gi|228757818|gb|EEM07043.1| hypothetical protein bmyco0002_4150 [Bacillus mycoides Rock1-4]
 gi|228763901|gb|EEM12789.1| hypothetical protein bmyco0003_4180 [Bacillus mycoides Rock3-17]
 gi|228770170|gb|EEM18750.1| hypothetical protein bpmyx0001_4050 [Bacillus pseudomycoides DSM
           12442]
          Length = 243

 Score = 40.3 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 78/243 (32%), Gaps = 50/243 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N    EI       +                +P +      I
Sbjct: 28  GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234
            + G GEPL   D +   + +      +       T+ +SG        F   +  + + 
Sbjct: 74  TVSG-GEPLLQLDFL---IELFKKCKEIGI---HTTIDSSGGCYSEEPEFQRKLNILMDY 126

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             ++L + L  +       L         E ++   R+       + I   +V++ G+ D
Sbjct: 127 TDLVL-LDLKHIDPKKHRKLTGKTN----EHILQFARYLSDK--QKPIWVRHVLVPGVTD 179

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340
           S  D   L   ++ +    K+ ++P++          G +Y         +K++      
Sbjct: 180 SEEDLQRLSSFIQSLSNVKKVEVLPYHKLGVYKWEALGHKYPLEGVEPPTEKNVQKAKNI 239

Query: 341 IKR 343
           ++ 
Sbjct: 240 LQA 242


>gi|83594329|ref|YP_428081.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170]
 gi|83577243|gb|ABC23794.1| Radical SAM [Rhodospirillum rubrum ATCC 11170]
          Length = 265

 Score = 40.3 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 35/212 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISN 181
           GC   C++C+                      +   G     ++    V P  G  +I+ 
Sbjct: 50  GCQFRCAYCHNPD-----------------TWKLHNGRALDLDEAMAEVSPYAGFLRIAG 92

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN--IARVGEEIGVML 239
            V +  GEPL   D     L+   D +GL        L T GF+      R  + + ++L
Sbjct: 93  GVTVSGGEPLMQADFTGALLARLKDQLGL-----HTALDTQGFLHAGVSDRWFDPVDLVL 147

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            + +     +  + L        L   +        L   + +   YV++ G+ D   D 
Sbjct: 148 -LDIKHSDPEAYHRLTGQA----LAPTLAFAHRLVDL--GKPMWIRYVLVPGLTDGADDI 200

Query: 300 LNLIKILKGI-PA--KINLIPFNPWPGCEYLC 328
             L   L  + PA  ++ ++PF+     ++  
Sbjct: 201 DRLADFLACLGPAVQRVEVLPFHQMGAAKWAR 232


>gi|291546361|emb|CBL19469.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus sp. SR1/5]
          Length = 249

 Score = 40.3 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 78/243 (32%), Gaps = 55/243 (22%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC++ C FC+   T   K     TA+E+L +    RS  G   G                
Sbjct: 33  GCAMRCQFCHNPDTWQMKTGTEYTADELLEKACRYRSYWGSKGG---------------- 76

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234
             I + G GEPL   D +     +   +  L       TL TSG       P   +  E 
Sbjct: 77  --ITVSG-GEPLLQIDFL---TELFRKAKKLGI---HTTLDTSGNPYTEEGPWYEKWEEL 127

Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           +     + + +  +  +   IL     K     ++   R    +     +   +V++   
Sbjct: 128 MKYTDLVMLDIKHIDEEQHKILTGCTNKN----ILAMARKLSDM--GVSMWIRHVLVPER 181

Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFS 338
           ND       L   +  +    ++ ++P++     ++                ++ I    
Sbjct: 182 NDRDDYLHRLADFIATLKTVERVEVLPYHTLGTFKWENLHIDYPLKGINPPTKERIENAE 241

Query: 339 ECI 341
           + +
Sbjct: 242 KIL 244


>gi|68248784|ref|YP_247896.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae
           86-028NP]
 gi|145635283|ref|ZP_01790986.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           PittAA]
 gi|145637339|ref|ZP_01792999.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           PittHH]
 gi|145641513|ref|ZP_01797091.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           R3021]
 gi|68056983|gb|AAX87236.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           86-028NP]
 gi|145267427|gb|EDK07428.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           PittAA]
 gi|145269431|gb|EDK09374.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           PittHH]
 gi|145273804|gb|EDK13672.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           22.4-21]
          Length = 246

 Score = 40.3 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL-- 327
            Y    N       YV++ G  DS  D   L + ++G+    K+ L+P++     ++   
Sbjct: 155 KYLQKRNQH-TWIRYVVVPGYTDSDHDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTL 213

Query: 328 ----------CSDQKDIVTFSECIKRSGYSS 348
                        ++ +      ++  G++ 
Sbjct: 214 GLDYELEDVLPPTKESLEHIKTILEGYGHTV 244


>gi|227551205|ref|ZP_03981254.1| [formate-C-acetyltransferase]-activating enzyme [Enterococcus
           faecium TX1330]
 gi|257896172|ref|ZP_05675825.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           Com12]
 gi|293377172|ref|ZP_06623380.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           PC4.1]
 gi|227179673|gb|EEI60645.1| [formate-C-acetyltransferase]-activating enzyme [Enterococcus
           faecium TX1330]
 gi|257832737|gb|EEV59158.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           Com12]
 gi|292644192|gb|EFF62294.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           PC4.1]
          Length = 253

 Score = 40.3 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 91/275 (33%), Gaps = 56/275 (20%)

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEIL 148
              + IG    IET    +       V  Q GC + C FC+   T      +  +A+E+L
Sbjct: 1   MEEKTIGYVHSIETFGSVDGPGLRFVVFMQ-GCRMRCQFCHNPDTWNIGGGKEYSADELL 59

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            +    R   GD  G                  I + G GEPL   D + +    A +  
Sbjct: 60  DKAERFRPYWGDKGG------------------ITVSG-GEPLLQIDFLIELFKKAKER- 99

Query: 209 GLSFSKRRITLSTSGFV-----PNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKY 261
                K   TL T G       P  +R  E +     L   +  + N+    L      +
Sbjct: 100 -----KMHTTLDTCGKPFTYEDPFFSRFQELMKYTDLLLFDIKHIDNEEHKKLT----HW 150

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN 319
             E +++  ++   ++    +   +V++   +D     + L   ++ +    ++ ++P++
Sbjct: 151 DNENILEMAQYLSKINK--PVWIRHVLVPERSDYDEYLIRLDNFIQTLSNVDRVEILPYH 208

Query: 320 PWPGCEY------------LCSDQKDIVTFSECIK 342
                ++                ++ +      + 
Sbjct: 209 TMGKYKWETLGLKYPLEGIEPPTKERVENAKRLLH 243


>gi|315230631|ref|YP_004071067.1| hypothetical protein TERMP_00867 [Thermococcus barophilus MP]
 gi|315183659|gb|ADT83844.1| hypothetical protein TERMP_00867 [Thermococcus barophilus MP]
          Length = 424

 Score = 40.3 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 78/207 (37%), Gaps = 25/207 (12%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           + ++    + V    GC+L+C FC        R       +  V+    L+  F      
Sbjct: 113 LIDRGTNLIQVRGSSGCNLSCIFCSVDEGPYSRTRR----IDYVVDIDYLMKWFDEVARF 168

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-- 225
           +G  + +         + G GEPL  +  + + +    +   +      +++ ++G +  
Sbjct: 169 KGKGLEAH--------LDGQGEPLL-YPFIVELVQALKEHPNVDV----VSMQSNGVLLN 215

Query: 226 -PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
              +  + E     + +S+H++  +   +L+   + Y L  +++             +  
Sbjct: 216 DKLVEELAEAGLDRINLSVHSLDPEKAKMLM-GMKNYDLNHVLEMAEALVNA--GIDVLL 272

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPA 311
             V++ G+ND+   A   I+  + I A
Sbjct: 273 APVIIFGVNDNE--AEAFIEFARKIGA 297


>gi|114567979|ref|YP_755133.1| radical SAM protein [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338914|gb|ABI69762.1| radical SAM domain protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 458

 Score = 40.3 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
            +  V +   S   LC++    C++ CS+C+                    L  +L+   
Sbjct: 90  AVPVVELSRLSVKALCLNMAHSCNMKCSYCFASQGNFG-------------LRPALMSLE 136

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
                ++ ++  S  R+   +   G GEPL  F  +K  ++ A +    +  +   TL+T
Sbjct: 137 TAKAALDFLLEQSGERQNLEVDFFG-GEPLLVFPVIKDLVAYARERERKTGKRFSFTLTT 195

Query: 222 SGFV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
           +  +    +       +IGV++++     ++D R+ L+  N +   E+++   R      
Sbjct: 196 NCLLLDEEVQEFVIDHKIGVIMSLDGRKETHD-RHRLL-NNGQGSYELVLPKIREMLAKE 253

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
                       +   D   D  +++++  G    ++L P
Sbjct: 254 P-ISYYVRGTFTRDNLDFSEDLRHMLEL--GFTC-VSLEP 289


>gi|257126654|ref|YP_003164768.1| pyruvate formate-lyase activating enzyme [Leptotrichia buccalis
           C-1013-b]
 gi|257050593|gb|ACV39777.1| pyruvate formate-lyase activating enzyme [Leptotrichia buccalis
           C-1013-b]
          Length = 254

 Score = 40.3 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 81/215 (37%), Gaps = 35/215 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N+   EI       +         E ++ ++      K   +
Sbjct: 39  GCPLRCLYCH--------NVDTWEI-------KDKKMIMTASEVMKEILKVRGFIKTGGV 83

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
            + G GEPL   + + +         G+        L TSG++      +V E +  M+ 
Sbjct: 84  TVSG-GEPLMQPEFLMELFK-LCRENGIQ-----TALDTSGYIFSDKAKQVLELVD-MVL 135

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + +  ++ +   IL  +     L+  +   ++   ++        YV++ G +D   D  
Sbjct: 136 LDIKHINPEKYKILTSVE----LDNTLKFAKYLNEINK--PTWLRYVLVPGYSDDENDLH 189

Query: 301 NLIKI---LKGIPAKINLIPFNPWPGCEYLCSDQK 332
              K    LK +  +++++PF+     ++    ++
Sbjct: 190 EWAKFTSQLKNVE-RVDVLPFHQMGQYKWEKVGKE 223


>gi|290581007|ref|YP_003485399.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
           mutans NN2025]
 gi|254997906|dbj|BAH88507.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
           mutans NN2025]
          Length = 258

 Score = 40.3 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 78/210 (37%), Gaps = 21/210 (10%)

Query: 123 GCSLTCSFCYT-GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKI 179
           GC L C +C    +QK       E++L        ++G+    EDI   V   +    + 
Sbjct: 30  GCPLRCPWCSNPESQKYK----PEQMLDAETKLPMIIGEEKTVEDIISEVKKDIDFYEES 85

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VM 238
              + +  GE    F+   K++   +   GL        + T+ F  +  +  + I  V 
Sbjct: 86  GGGLTLSGGEIFAQFE-FAKAILKCAKEEGL-----HTAIETTAFAEH-EKFTDLIQYVN 138

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
              +     N +R+  V       +   I     +   ++ + I     ++   N+S  D
Sbjct: 139 FIYTDLKHYNTIRHRKVTGVNNNLIIQNI-----HYAFTHKKTIVLRIPVIPDFNNSLDD 193

Query: 299 ALNLIKILKGIPA-KINLIPFNPWPGCEYL 327
           A +  K+   I   K+ L+PF+ +   +Y 
Sbjct: 194 AEHFAKLFNDIQVDKVQLLPFHQFGENKYK 223


>gi|220916688|ref|YP_002491992.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954542|gb|ACL64926.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 446

 Score = 40.3 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 69/212 (32%), Gaps = 33/212 (15%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQ---------KLVRNLTAEEILLQVLLARSLLGD 160
              R    + S   C+  C  C +            ++ R  TA E+    +  R L   
Sbjct: 183 FYGRDEGAIPSSAACNAACVGCLSEQDEGMPPSSHERIARPPTAAEMAD--VAVRHLERA 240

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
                   G                  GEPL  +  ++K++ +          +  +  +
Sbjct: 241 TGRVMVSFGQGCE--------------GEPLLRWKEIEKAIRLIRART----RRGTLHAN 282

Query: 221 TSGFVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           T+G +P  +AR+       + ISL++ S DL          Y LE ++   R     +  
Sbjct: 283 TNGSLPEALARLVAAGLESVRISLNSASPDLYAAYYRPT-GYGLEDVVRGVR--AAKAGG 339

Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
             +    +   G+ D   +A  L +++     
Sbjct: 340 AYVALNLLTFPGVTDRGGEAERLCQLVADTGV 371


>gi|118476198|ref|YP_893349.1| formate acetyltransferase activating enzyme [Bacillus thuringiensis
           str. Al Hakam]
 gi|196045353|ref|ZP_03112585.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB108]
 gi|229182833|ref|ZP_04310070.1| hypothetical protein bcere0004_4140 [Bacillus cereus BGSC 6E1]
 gi|118415423|gb|ABK83842.1| formate acetyltransferase activating enzyme [Bacillus thuringiensis
           str. Al Hakam]
 gi|196023937|gb|EDX62612.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB108]
 gi|228600639|gb|EEK58222.1| hypothetical protein bcere0004_4140 [Bacillus cereus BGSC 6E1]
          Length = 243

 Score = 40.3 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 50/243 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N    EI       +                +P +      I
Sbjct: 28  GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234
            + G GEPL   D +   + +      +       T+ +SG        F   +  + E 
Sbjct: 74  TVSG-GEPLLQLDFL---IELFKKCKEIGI---HTTVDSSGGCYSEEPEFQNKLDILMEY 126

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             ++L    H  S   R +    N        I     Y    N   I   +V++ G+ D
Sbjct: 127 TDLVLLDLKHIDSKKHRKLTGKPN------EHILQFARYLSDKNK-PIWVRHVLVPGVTD 179

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340
           +  D   L   ++ +    K+ ++P++          G +Y         +K++      
Sbjct: 180 NEEDLQKLSSFIQSLSNVQKVEVLPYHKLGVYKWEALGHKYPLANVEPPTEKNVEQARHI 239

Query: 341 IKR 343
           ++ 
Sbjct: 240 LQA 242


>gi|15920235|ref|NP_375904.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase 66
           kd subunit [Sulfolobus tokodaii str. 7]
 gi|15621017|dbj|BAB65013.1| 532aa long hypothetical magnesium-protoporphyrin ix monomethyl
           ester oxidative cyclase 66 kd subunit [Sulfolobus
           tokodaii str. 7]
          Length = 532

 Score = 40.3 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 77/207 (37%), Gaps = 28/207 (13%)

Query: 106 VYIPEKSRGTLCVSSQVGCSLTCSFCY-TGTQKLV-RNLTAEEILLQVLLARSLLGDFPG 163
           V I    +   C+ +  GC   C FC  T T     RN +   IL ++  A+ L  ++  
Sbjct: 189 VKIFGDDQYVACLETARGCPYACDFCSVTPTWGNKWRNKSNNRILKEISKAKELGYNWIF 248

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
             D   +V P+  ++ +  +   M E      N    ++                   + 
Sbjct: 249 FVDDIFIVWPNRSQRAA--LFRKMIE----TKNTINFIAQMRAD-------------VTA 289

Query: 224 FVPNIARVGEEIGVMLAIS-LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
             P + ++  + G+ +A   + + S ++   L  +++   +   I+A +    L     I
Sbjct: 290 RNPELIKLASDAGLRIAFLGIESGSQEV---LKKMHKGLAVSDSINAVK---TLHENGVI 343

Query: 283 TFEYVMLKGINDSPRDALNLIKILKGI 309
               +M+    ++ +D    +K+ + +
Sbjct: 344 VLVGLMIGAPYETIKDIRATVKLSRKL 370


>gi|294055622|ref|YP_003549280.1| pyruvate formate-lyase activating enzyme [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614955|gb|ADE55110.1| pyruvate formate-lyase activating enzyme [Coraliomargarita
           akajimensis DSM 45221]
          Length = 262

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 83/245 (33%), Gaps = 48/245 (19%)

Query: 123 GCSLTCSFCYT-GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           GC L C +C+    Q                      G+    E +   VI         
Sbjct: 49  GCPLRCMYCHNPDAQG------------------KPHGEQKSPETVIEDVIKYRNFIKDG 90

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
            + +  GEPL     V+++  +A +      +    TL TSGF+ +  +  +E+     +
Sbjct: 91  GLTISGGEPLMQPQFVEETFKLAKE------AGLHTTLDTSGFLGH--KASDELLDNTDL 142

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRDA 299
            L  +         P+  KY   + +D    +         ++   +V++ G+ D+ ++ 
Sbjct: 143 VLLDI-----KSWSPLTYKYVTGVCVDNTVKFAKRLEERGNKVWIRFVLVPGLTDNAKNV 197

Query: 300 LNLIKILK--GIPAKINLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSG 345
             L + +   G   ++ ++PF+     +Y                + ++        + G
Sbjct: 198 DGLAEFVATLGNVERVEILPFHKMGEHKYAAAGLDYKLKDTPTPTKGEVDAVQRIFAKHG 257

Query: 346 YSSPI 350
             + +
Sbjct: 258 VETFV 262


>gi|242277640|ref|YP_002989769.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242120534|gb|ACS78230.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 328

 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 30/193 (15%)

Query: 124 CSLTCSFCYTGTQKL---VRNLT--AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           CS+ C +C  G   L    R++   A EIL ++   +      P                
Sbjct: 29  CSMDCVYCEVGKTDLLTGERDVYVPAAEILRELENWKQEGHQPPEF-------------- 74

Query: 179 ISNIVMMGMGEPLCN--FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
              I + G+GEP  N     V + +         S     +T +T+   P + +   E  
Sbjct: 75  ---ITLGGLGEPTLNSEMPEVIRGIKKL----FPSMPVAVLTNATAMTDPEVRKELLEAD 127

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           V+L      V+++ R  +    +      +  A   +    N  +I  E ++ +G NDS 
Sbjct: 128 VVLPSMDSLVASEFRA-INRPCKGTDPTAIAKALIEFRKEFNG-KIFLEVLLSRGYNDSD 185

Query: 297 RDALNLIKILKGI 309
            +   +      +
Sbjct: 186 ENLSLMKDFCSKL 198


>gi|291534245|emb|CBL07358.1| Pyruvate-formate lyase-activating enzyme [Megamonas hypermegale
           ART12/1]
          Length = 412

 Score = 40.3 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 80/240 (33%), Gaps = 41/240 (17%)

Query: 116 LCVSSQVGC----SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
           +C ++  GC       C        K     T +EI  Q+       G +      + ++
Sbjct: 185 VCNANCFGCISLQPAECCPSPQSRIKFRP--TPKEI-AQI-------GIYHLETAPDAII 234

Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST-SGFVPNIAR 230
               G +         GEP    DN+  ++            K +I ++T +G+   I R
Sbjct: 235 SFGQGCE---------GEPSLAVDNIVPAIEKIRKKTD----KGQININTNAGYTEGIKR 281

Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
           +       + +S+ +   +        +  Y L+ + ++ R+     +   I+   +   
Sbjct: 282 IVNAGLDSMRVSIISAIPENYKAYYRGS--YELDNVKESIRY--AHEHGVHISLNMLYFP 337

Query: 291 GINDSPRDALNLIKILKGIPAKINLIP---FNPWPG--CEYLCSDQKDI--VTFSECIKR 343
           G NDS  +     + L   P  +N+I     N  P    E +    K I    F   +  
Sbjct: 338 GFNDSESEFKAWKEFLHENP--VNMIQIRNLNIDPDAFAEIMPPFTKAIGTKEFIRQLHE 395


>gi|224371625|ref|YP_002605789.1| putative Fe-S oxidoreductase [Desulfobacterium autotrophicum HRM2]
 gi|223694342|gb|ACN17625.1| putative Fe-S oxidoreductase [Desulfobacterium autotrophicum HRM2]
          Length = 316

 Score = 40.3 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 71/227 (31%), Gaps = 34/227 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CSL C +C  G        T +      L               E     S       I 
Sbjct: 28  CSLDCIYCECGK-------TTD------LTVERKEYVPVDAVLAELEDYFSNHPDPDFIT 74

Query: 184 MMGMGEPLCNF--DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVML 239
             G GEP  N    +V   +         + S   +T  T    P + +  +G ++ VM 
Sbjct: 75  FSGSGEPCLNLRIKDVIDFIKTRKP----NVSIAVLTNGTLLNDPEVRKSILGADL-VMP 129

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           ++     S+  R  +   +        ID    +    +  R   E  +L G ND+P + 
Sbjct: 130 SLDGAMPSSLRR--INRPHPSINATTYIDGLVAFRAEFHG-RFALEIFILPGYNDTPEEL 186

Query: 300 LNLIKILKGIPAKINLIPFN--PWPGC--EYLCSDQK---DIVTFSE 339
             L   ++ I   I  I  N    PG       S ++    I  F +
Sbjct: 187 QALKAAVERIQPDI--IQLNTLDRPGVVPNIHASTRESLDQIAAFFK 231


>gi|256545760|ref|ZP_05473116.1| pyruvate formate-lyase activating enzyme [Anaerococcus vaginalis
           ATCC 51170]
 gi|256398456|gb|EEU12077.1| pyruvate formate-lyase activating enzyme [Anaerococcus vaginalis
           ATCC 51170]
          Length = 320

 Score = 40.3 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 18/127 (14%)

Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY----PLEML 266
             S     + T G+ P   +  + I   + + L  +       + P+  KY      E +
Sbjct: 162 HMSGINTAIETCGYTP--RKSLDLIKDHVDLFLFDI-----KQMDPVKHKYWTGVNNERI 214

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN-----LIPFNPW 321
           +   R+        R+     +LKG+NDS  +   ++  L+      N     L+P++ +
Sbjct: 215 LSNLRYLLECGKKVRVRMP--ILKGVNDSHEEIKAVVDFLEDFKCFKNFDGIDLLPYHRY 272

Query: 322 PGCEYLC 328
              +Y  
Sbjct: 273 GVGKYEQ 279


>gi|325969719|ref|YP_004245911.1| Fe-S oxidoreductase [Vulcanisaeta moutnovskia 768-28]
 gi|323708922|gb|ADY02409.1| Fe-S oxidoreductase [Vulcanisaeta moutnovskia 768-28]
          Length = 310

 Score = 40.3 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 73/186 (39%), Gaps = 25/186 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C +C        R++             +L   +P  + I+ + I +  R    + 
Sbjct: 28  CNFNCIYC---QLGRTRHV-----------INNLRMFYPPEDIIKELEIATRTRNYDYLT 73

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG---FVPNIARVGEEIGVMLA 240
            +G GEP   +  + K +  A ++       + + + T+G       I     E+ V + 
Sbjct: 74  FIGDGEPTL-YAGLGKLIQWARNNQ-----DKPLAILTNGAKLIDEGIRTWLSELDV-VK 126

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +S  A +     ++   +R+   +  ++    +  + + + I  E ++++G+ND+  +  
Sbjct: 127 VSTDAGNEKTFRLINRPHREITFDRFVEGIERFREVFSGQ-IWTEIMLVQGVNDNEDEIE 185

Query: 301 NLIKIL 306
            +   L
Sbjct: 186 RIGDAL 191


>gi|150015587|ref|YP_001307841.1| glycyl-radical activating family protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902052|gb|ABR32885.1| glycyl-radical enzyme activating protein family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 300

 Score = 40.3 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 33/171 (19%)

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS------TSGFVPNIARVGEEIGV 237
           +   GE      +V     +  D M    S   +TLS         F   + +V +E  +
Sbjct: 101 LSAEGE-FLTLSHVMN--EVMKDEMFYEESNGGVTLSGGEVLMHHEFASQLLKVLKEKNI 157

Query: 238 MLAIS---------LHAVSNDL-----------RNILVPINRKYPLEMLIDACRHYPGLS 277
              I            +  +D+           R     +   Y  +++I+  +    + 
Sbjct: 158 HTTIETTGYTSNEIFSSFIDDVDLLLFDIKHYDREKHFKVTNVYN-DLIIENLK--IAID 214

Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL 327
           N + +     ++  IN S  DA    K+L+ + A KINL+PF+ +   +Y 
Sbjct: 215 NGKDVIIRIPVIPNINSSLEDAKGFCKLLESVNAKKINLLPFHQFGQKKYE 265


>gi|182419316|ref|ZP_02950569.1| heme biosynthesis [Clostridium butyricum 5521]
 gi|237667748|ref|ZP_04527732.1| radical SAM domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376956|gb|EDT74527.1| heme biosynthesis [Clostridium butyricum 5521]
 gi|237656096|gb|EEP53652.1| radical SAM domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 453

 Score = 40.3 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 69/195 (35%), Gaps = 21/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++   GC+L C +C+    +   +         V+            + I+ ++  S
Sbjct: 96  AICLNVIHGCNLRCKYCFADEGEYHGH-------GGVMSVE------TAKKAIDYVIKRS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARV 231
             RK   I + G GEP    D +K+ +  A D+    G        T +T      +  +
Sbjct: 143 GPRKNIEIDLFG-GEPTLIMDKIKEIIKYARDNEEKWGKRIRFTMTTNATLLTPEMMDYM 201

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVML 289
             E   ++L++      ND  N+ +  ++    + +I   +      +  +         
Sbjct: 202 DKEMGNIILSLDGRKEVND--NVRIKPDKSGSYDDIIPNIKEMIKRRTPGKTYYVRGTFT 259

Query: 290 KGINDSPRDALNLIK 304
           +   D   D + ++ 
Sbjct: 260 RDNTDFYEDVMAMVN 274


>gi|190347148|gb|EDK39369.2| hypothetical protein PGUG_03467 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 696

 Score = 40.3 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 13/124 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF----QGMSDIS-----QE 59
           +  M  EELE  L+         + R   ++K +Y   +  F      + + +      E
Sbjct: 100 IRDMDYEELEALLVSWRDSNIPQKRR---LFKLVYGLTVTTFIQCLDDLHNEAIGFPNAE 156

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
            R  L   F          +   DG+  +L    A  +G       V     +RG  CV 
Sbjct: 157 KREKLYNEFEPDEFRYTMMEHPADGSELYL-PVDALIVGSGSGAGVVAETLSNRGFKCVV 215

Query: 120 SQVG 123
            + G
Sbjct: 216 LEKG 219


>gi|146416233|ref|XP_001484086.1| hypothetical protein PGUG_03467 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 696

 Score = 40.3 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 13/124 (10%)

Query: 9   LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF----QGMSDIS-----QE 59
           +  M  EELE  L+         + R   ++K +Y   +  F      + + +      E
Sbjct: 100 IRDMDYEELEALLVSWRDSNIPQKRR---LFKLVYGLTVTTFIQCLDDLHNEAIGFPNAE 156

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119
            R  L   F          +   DG+  +L    A  +G       V     +RG  CV 
Sbjct: 157 KREKLYNEFEPDEFRYTMMEHPADGSELYL-PVDALIVGSGSGAGVVAETLSNRGFKCVV 215

Query: 120 SQVG 123
            + G
Sbjct: 216 LEKG 219


>gi|209518779|ref|ZP_03267593.1| Radical SAM domain protein [Burkholderia sp. H160]
 gi|209500749|gb|EEA00791.1| Radical SAM domain protein [Burkholderia sp. H160]
          Length = 376

 Score = 40.3 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+       L + L  V+  +R  ++P     P+   ++A      +    +++  Y+
Sbjct: 230 FERMKASGIDTLGMHLEVVTPAVRARVMPGKASVPISRYMEAFEAAVAVFGRGQVS-TYI 288

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347
           +  G+ D+    L++ + L  I     ++PF P  G                 +   G  
Sbjct: 289 L-AGLGDTAEAILSISRELIDIGVYPFVVPFVPISGTPLEDHPAPAAEFMKSILAPLG-- 345

Query: 348 SPIR--TPRGLDILAACG 363
           + +R    R  DI A CG
Sbjct: 346 AMLREAKMRSADIKAGCG 363


>gi|169349840|ref|ZP_02866778.1| hypothetical protein CLOSPI_00578 [Clostridium spiroforme DSM 1552]
 gi|169293408|gb|EDS75541.1| hypothetical protein CLOSPI_00578 [Clostridium spiroforme DSM 1552]
          Length = 249

 Score = 40.3 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 76/242 (31%), Gaps = 48/242 (19%)

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC L C +C+                           +    E +E  +          
Sbjct: 30  HGCPLRCKYCHNPD---------------TWANSKETMEMTPQEALEKALKYKTYWGNEG 74

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIG 236
            + +  GEPL   D + +   +A              + TSG       P   +  E + 
Sbjct: 75  GITISGGEPLLQIDFLIELFKLAKKE------GVNTCIDTSGANFTREEPFFNKFNELMK 128

Query: 237 VM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               L + +  + +     L       P + ++D  ++   ++ +  +   +V++ GI+D
Sbjct: 129 YTDLLLLDIKHIDSQKHKELTGK----PNDNILDMAKYLSDINKS--VWIRHVLVPGISD 182

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
                + L K +  +    K+ ++P++     ++                Q+ +   ++ 
Sbjct: 183 VDEYLIELDKFISSLNNVKKVEVLPYHTLGTFKWEELNIPYQLEGVNPPSQERVDNANKL 242

Query: 341 IK 342
           + 
Sbjct: 243 LH 244


>gi|229089571|ref|ZP_04220838.1| hypothetical protein bcere0021_4180 [Bacillus cereus Rock3-42]
 gi|300119070|ref|ZP_07056781.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus SJ1]
 gi|228693787|gb|EEL47483.1| hypothetical protein bcere0021_4180 [Bacillus cereus Rock3-42]
 gi|298723686|gb|EFI64417.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus SJ1]
 gi|324324548|gb|ADY19808.1| pyruvate formate-lyase-activating enzyme [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 243

 Score = 40.3 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 50/243 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N    EI       +                +P +      I
Sbjct: 28  GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234
            + G GEPL   D +   + +      +       T+ +SG        F   +  + E 
Sbjct: 74  TVSG-GEPLLQLDFL---IELFKKCKEIGI---HTTIDSSGGCYSEEPEFQNKLDILMEY 126

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             ++L    H  S   R +    N        I     Y    N   I   +V++ G+ D
Sbjct: 127 TDLVLLDLKHIDSKKHRKLTGKPN------EHILQFARYLSDKNK-PIWVRHVLVPGVTD 179

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340
           +  D   L   ++ +    K+ ++P++          G +Y         +K++      
Sbjct: 180 NEEDLQKLSSFIQSLSNVQKVEVLPYHKLGVYKWEALGHKYPLANVEPPTEKNVEEARHI 239

Query: 341 IKR 343
           ++ 
Sbjct: 240 LQA 242


>gi|257887678|ref|ZP_05667331.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,141,733]
 gi|257823732|gb|EEV50664.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           1,141,733]
          Length = 253

 Score = 39.9 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 90/275 (32%), Gaps = 56/275 (20%)

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEIL 148
              + IG    IET    +       V  Q GC + C FC+   T      +  +A+E+L
Sbjct: 1   MEEKTIGYVHSIETFGSVDGPGLRFVVFMQ-GCRMRCQFCHNPDTWNIGGGKEYSADELL 59

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            +    R   GD  G                  I + G GEPL   D + +    A +  
Sbjct: 60  DKAERFRPYWGDKGG------------------ITVSG-GEPLLQIDFLIELFKKAKERE 100

Query: 209 GLSFSKRRITLSTSGFV-----PNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKY 261
                    TL T G       P  +R  E +     L   +  + N+    L      +
Sbjct: 101 ------MHTTLDTCGKPFTYEDPFFSRFQELMKYTDLLLFDIKHIDNEEHKKLT----HW 150

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN 319
             E +++  ++   ++    +   +V++   +D     + L   ++ +    ++ ++P++
Sbjct: 151 DNENILEMAQYLSKINK--PVWIRHVLVPERSDYDEYLIRLDNFIQTLSNVDRVEILPYH 208

Query: 320 PWPGCEY------------LCSDQKDIVTFSECIK 342
                ++                ++ +      + 
Sbjct: 209 TMGKYKWETLGLKYPLEGIEPPTKERVENAKRLLH 243


>gi|157961496|ref|YP_001501530.1| pyruvate formate lyase-activating enzyme 1 [Shewanella pealeana
           ATCC 700345]
 gi|157846496|gb|ABV86995.1| pyruvate formate-lyase activating enzyme [Shewanella pealeana ATCC
           700345]
          Length = 246

 Score = 39.9 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 81/249 (32%), Gaps = 56/249 (22%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              +  ++++ Q++  R      P  E   G V  S G 
Sbjct: 29  GCLMRCLYCHNRDTWDLHGGKE--MKVDDLMSQIISYR------PFLEASGGGVTASGGE 80

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233
            I     +           + K+        G+        L T+GFV    P I  + +
Sbjct: 81  AIIQADFVA---------ELFKACK----KEGI-----HTCLDTNGFVRKHTPIIDELLD 122

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
               ++ + +  + +     L  ++     +  +    H       ++    YV++ G  
Sbjct: 123 NTD-LVMLDIKQIDDAKHIDLTNVSN----QRTLQFAEHL--HKRGQKAWIRYVVVGGYT 175

Query: 294 DSPRDALNLIKILKGIPA--KINLIPFN-------PWPGCEYL-----CSDQKDIVTFSE 339
           D    A  L + ++ +    K+ L+P++          G +Y          + +    +
Sbjct: 176 DDIPSAQALAEFIQPMKNVEKVELLPYHELGKHKWEAMGMDYELNNISPPSTETMEQIKK 235

Query: 340 CIKRSGYSS 348
                G ++
Sbjct: 236 VFTDMGMNA 244


>gi|257898809|ref|ZP_05678462.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           Com15]
 gi|293570288|ref|ZP_06681357.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E980]
 gi|257836721|gb|EEV61795.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           Com15]
 gi|291609695|gb|EFF38956.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E980]
          Length = 253

 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 90/275 (32%), Gaps = 56/275 (20%)

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEIL 148
              + IG    IET    +       V  Q GC + C FC+   T      +  +A+E+L
Sbjct: 1   MEEKTIGYVHSIETFGSVDGPGLRFVVFMQ-GCRMRCQFCHNPDTWNIGGGKEYSADELL 59

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            +    R   GD  G                  I + G GEPL   D + +    A +  
Sbjct: 60  DKAERFRPYWGDKGG------------------ITVSG-GEPLLQIDFLIELFKKAKERE 100

Query: 209 GLSFSKRRITLSTSGFV-----PNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKY 261
                    TL T G       P  +R  E +     L   +  + N+    L      +
Sbjct: 101 ------MHTTLDTCGKPFTYEEPFFSRFQELMKYTDLLLFDIKHIDNEEHKKLT----HW 150

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN 319
             E +++  ++   ++    +   +V++   +D     + L   ++ +    ++ ++P++
Sbjct: 151 DNENILEMAQYLSKINK--PVWIRHVLVPERSDYDEYLIRLDNFIQTLSNVDRVEILPYH 208

Query: 320 PWPGCEY------------LCSDQKDIVTFSECIK 342
                ++                ++ +      + 
Sbjct: 209 TMGKYKWETLGLKYPLEGIEPPTKERVENAKRLLH 243


>gi|254785629|ref|YP_003073058.1| nitrogenase cofactor biosynthesis protein NifB [Teredinibacter
           turnerae T7901]
 gi|237686986|gb|ACR14250.1| nitrogenase cofactor biosynthesis protein NifB [Teredinibacter
           turnerae T7901]
          Length = 498

 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 79/210 (37%), Gaps = 33/210 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C +C         N +   ++ ++L         P    ++   + +   +++ + 
Sbjct: 62  CNIQCHYCNRKYD--CSNESRPGVVSELLT--------PEQAVMKVRAVAANIPQMTVLG 111

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241
           + G G+PL N +    +  + S+         ++ +ST+G     ++  + +     + I
Sbjct: 112 IAGPGDPLANPERTFSTFRMLSEQT----PDIKLCVSTNGLALPESVEELAKHNIDHVTI 167

Query: 242 SLHAVSNDLRNILVPI----NRKYP--------LEMLIDACRHYPGLSNARRITFEYVML 289
           +++ V  ++   + P     NR+          +E                 +    VM+
Sbjct: 168 TINTVDPEIGAKIYPWIYWNNRRIRGVKGAKILIEQQQKGLEMLTER--GILVKVNSVMI 225

Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPF 318
            G+ND       + +I+K   A + N++P 
Sbjct: 226 PGVND--DHLKEVSRIVKQKGAFLHNVMPL 253


>gi|328676803|gb|AEB27673.1| Lysine 2,3-aminomutase [Francisella cf. novicida Fx1]
          Length = 328

 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 48/217 (22%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
            K  G + + +Q+ C++ C +C+        N+                   PG +D   
Sbjct: 97  HKYHGRVLLIAQISCAVHCRYCFRKEFDYKENI-------------------PGRKDWSK 137

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGF 224
                   +    V++  G+PL N D + +     +        L   S+  + L     
Sbjct: 138 AFEYIANDQSIEEVILSGGDPLLNNDEILEFFIENIQQIVHIKRLRIHSRIPVVLPERMT 197

Query: 225 VPNIARVGEE-IGVMLAISLHAVS--NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
              +  + E  +  +L I ++  +  +   + ++    KY + +L  +            
Sbjct: 198 TKLLKILSEHRLDTVLVIHVNHPNELDGNVSKILKEIHKYGIIILNQS------------ 245

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
                 +LK IND       L   L  I AK+  IP+
Sbjct: 246 -----TLLKDINDDANVLYALSTKL--INAKV--IPY 273


>gi|167629214|ref|YP_001679713.1| nifb [Heliobacterium modesticaldum Ice1]
 gi|167591954|gb|ABZ83702.1| nifb [Heliobacterium modesticaldum Ice1]
          Length = 277

 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 84/233 (36%), Gaps = 33/233 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C +C         N +   +  +V+     L        +E  +   +G  ++ + 
Sbjct: 40  CNIGCGYCVRKFD--CANESRPGVTSRVITPEQALW------RVEQALASDIGPYLNVVG 91

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGV-MLAI 241
           + G GEPL N +N  K+  +  +      S     +S++G +         ++ V  + +
Sbjct: 92  IAGPGEPLAN-ENTFKTFRLIQEHYPHLIS----CVSSNGLLLADRLDDLVKLNVSHITV 146

Query: 242 SLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEYVML 289
           +++ V   +   +    R               +E  +D        +  R +    V++
Sbjct: 147 TMNTVDPAIGARIYRHVRYQGQRLTGEAGAALLIERQLDGIER--AAAAGRTVKVNTVVI 204

Query: 290 KGINDSPRDALNLIKILKGIPAK-INLIPF-NPWPGCEYLCSDQKDIVTFSEC 340
            G+ND       L + +K   A+ +NL+P  N     +++      +    + 
Sbjct: 205 PGLNDDK--VATLAREVKRRGARLLNLMPLINQGDFADWVPPTPALLQKLQQI 255


>gi|78189217|ref|YP_379555.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium
           chlorochromatii CaD3]
 gi|78171416|gb|ABB28512.1| Nitrogenase cofactor biosynthesis protein NifB [Chlorobium
           chlorochromatii CaD3]
          Length = 423

 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 61/177 (34%), Gaps = 28/177 (15%)

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239
           + + G G+P  N D   ++L +          +  + ++T+G   +P I  +       +
Sbjct: 78  VGIAGPGDPFANPDETMETLRLVRAKY----PEMLLCVATNGLDLLPYIDELARLQVSHV 133

Query: 240 AISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEYV 287
            I+++A+  ++   +    R               +   ++A +    +          +
Sbjct: 134 TITINAIDPEIGQEIYAWVRYNKKMYRGKDAAKVLINNQLEALKRLKEV--GVTAKVNSI 191

Query: 288 MLKGINDS--PRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSE 339
           ++ GIND+     A  + ++   I    N +P+       +        + +    +
Sbjct: 192 IIPGINDAHVITVASKVAELGADIL---NCLPYYNTKETVFENIDEPSPELVFEIQK 245


>gi|331269245|ref|YP_004395737.1| Radical SAM domain-containing protein [Clostridium botulinum
           BKT015925]
 gi|329125795|gb|AEB75740.1| Radical SAM domain protein [Clostridium botulinum BKT015925]
          Length = 456

 Score = 39.9 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 21/196 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+    K                AR ++    G + I+ ++  S
Sbjct: 96  ALCLNVTHDCNLRCKYCFADEGKYHG-------------ARKVMSPEVGKKAIDFVIAHS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             RK   + + G GEPL     +K+ +S A +   +     R T++T+  + N   +   
Sbjct: 143 GPRKNIEVDLFG-GEPLIAIKEIKEIISYAREQEKIHNKVIRFTMTTNALLLNDEIMEYM 201

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVML 289
             E   ++L+I     SND   I V  +  Y  + ++   +      +  +         
Sbjct: 202 DKEMGNIVLSIDGRKESNDNTRIRVDGSGTY--DAILPKIKEMVDKRDKSKQYYVRGTFT 259

Query: 290 KGINDSPRDALNLIKI 305
           +   D   D  +L  +
Sbjct: 260 RDNTDFYYDVKHLADL 275


>gi|288961972|ref|YP_003452282.1| pyruvate formate lyase activating enzyme [Azospirillum sp. B510]
 gi|288914252|dbj|BAI75738.1| pyruvate formate lyase activating enzyme [Azospirillum sp. B510]
          Length = 272

 Score = 39.9 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 71/210 (33%), Gaps = 34/210 (16%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC L C +C+   T         T+ EIL  + L    L    G   + G          
Sbjct: 58  GCPLRCLYCHNPDTQHMHDGTRTTSTEILEDIALYAEFLKRAHGGLTLSG---------- 107

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
                   GEPL   +       I   +  L        L TSGF+ N A       V L
Sbjct: 108 --------GEPLVQPEFTAA---ILRGAKALGL---HTALDTSGFLGNHADDLLLEDVDL 153

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            +      ++            PL   ++      GL+   RI   YV++ G+ D   + 
Sbjct: 154 VLLDIKAFSE---KTYRPLTGVPLRPTLEFAERLAGLNK--RIWLRYVLVPGLTDDAAEI 208

Query: 300 LNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             L   + G+    +++++PF+     ++ 
Sbjct: 209 DGLADFVAGLGVVDRVDVLPFHKMGEHKWK 238


>gi|295680484|ref|YP_003609058.1| radical SAM protein [Burkholderia sp. CCGE1002]
 gi|295440379|gb|ADG19547.1| Radical SAM domain protein [Burkholderia sp. CCGE1002]
          Length = 376

 Score = 39.9 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+       L + L  VS ++R  ++P     P+   ++A R    +    +++  Y+
Sbjct: 230 FERMRASGIDTLGMHLEVVSPEVRARVMPGKASVPISRYMEAFRAAVAVFGKGQVS-TYI 288

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRS 344
           +  G+ D+    L++ + L  I     ++PF P  G           + +      +   
Sbjct: 289 L-AGLGDTAEAILSISRELIDIGVYPFVVPFVPISGTPLEDHPAPTPEFM---KSILAPL 344

Query: 345 GYSSPIRTP--RGLDILAACG 363
           G  + +R    R  DI A CG
Sbjct: 345 G--AMLRDAKMRSADIKAGCG 363


>gi|153939858|ref|YP_001392342.1| radical SAM domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|152935754|gb|ABS41252.1| radical SAM domain protein [Clostridium botulinum F str. Langeland]
 gi|295320334|gb|ADG00712.1| radical SAM domain protein [Clostridium botulinum F str. 230613]
          Length = 455

 Score = 39.9 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 73/195 (37%), Gaps = 21/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+    +                 R L+    G + I+ ++  S
Sbjct: 96  ALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPGVGKKAIDFVIEKS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             RK   + + G GEPL  F  +K+ +  A +         R T++T+G + N   +   
Sbjct: 143 GPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEKEEKHNKTIRFTMTTNGTLLNQEIMEYL 201

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
                 ++L+I      ND   + V  +  Y  + ++   +    + +  +  +      
Sbjct: 202 DKNMGNIVLSIDGRKEINDNVRVRVDGSGSY--DSILPKIKKMVEMRDKTKQYYARGTFT 259

Query: 291 GIN-DSPRDALNLIK 304
             N D   D +++  
Sbjct: 260 RENLDFFEDVMHMAN 274


>gi|121605004|ref|YP_982333.1| radical SAM domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120593973|gb|ABM37412.1| Radical SAM domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 362

 Score = 39.9 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 16/143 (11%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+ +     L + L  V+ +LR  ++P     P+   + A      +    +++  Y+
Sbjct: 213 FQRMRDAGIDTLGMHLEVVTPELRARIMPGKATVPISRYMAAFEASVRVFGRGQVS-TYI 271

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECI--- 341
           +  G+ D+P   L++   L  +     ++PF P  G             +    E +   
Sbjct: 272 L-AGLGDTPEAILSISGQLLALGVYPFVVPFVPISGTPLEDHPAPPADFMKALLEPLGAM 330

Query: 342 -KRSGYSSPIRTPRGLDILAACG 363
             R+G        R  DI A CG
Sbjct: 331 VARAGL-------RANDIKAGCG 346


>gi|332797084|ref|YP_004458584.1| Wyosine base formation domain-containing protein [Acidianus
           hospitalis W1]
 gi|332694819|gb|AEE94286.1| Wyosine base formation domain protein [Acidianus hospitalis W1]
          Length = 367

 Score = 39.9 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 19/207 (9%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQV-LLARSLLGDFPGC- 164
           E  R      +   C   C  C+        L  + T   I      +A   + +     
Sbjct: 65  ESHRCVQMTPTAAWCWFRCIHCWRLEPEDIGLEWDETKLPITDDPEYIAEKSIEEHKRAV 124

Query: 165 -----EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
                       +     K +++ +   GEP   +D + + +       GL        L
Sbjct: 125 SGYLGRKGVDPNMAKEAMKPAHVAISLTGEPTL-YDRLGELIHE-YHKRGL-----TTFL 177

Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
            TSG  P++    EE    L +S+ A +     ++          + +      P  S  
Sbjct: 178 VTSGVRPDVLASLEEEPTQLFVSIQAPNERKHKLINRPIVANSWNLFLKTLEILPSFS-- 235

Query: 280 RRITFEYVMLKGINDSPRDALNLIKIL 306
                   M+KG N S  DA +  K++
Sbjct: 236 SPTVIRMTMIKGFNMSEEDAKDFAKLI 262


>gi|320354470|ref|YP_004195809.1| hypothetical protein Despr_2377 [Desulfobulbus propionicus DSM
           2032]
 gi|320122972|gb|ADW18518.1| Protein of unknown function DUF2344 [Desulfobulbus propionicus DSM
           2032]
          Length = 846

 Score = 39.9 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 87/263 (33%), Gaps = 50/263 (19%)

Query: 106 VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL-VRNLTAEEILLQVLLARSLLGDFPGC 164
           V  P   R  L V    GC+  C FC  G     VR  T EEI+           +    
Sbjct: 253 VVNPVHDR--LGVEIARGCTRGCRFCQAGMTYRPVRERTLEEIM-----------ELANQ 299

Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL--SIASDSMGLSFSKRRITLSTS 222
                         +S      + E       +  +L    A D + +S    R+   T 
Sbjct: 300 GIAHSGFEELALLSLSTGDFSCLAE-------LMGALMDRFADDFVSVSMPSMRVGTLTP 352

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
             +  I RV  + G  +A    A ++ LR ++   N+    + L+  CR    L    ++
Sbjct: 353 EIMEQIKRV-RKTGFTVAPE--AGTDRLREVI---NKGISEQDLLATCRDAFAL--GWKL 404

Query: 283 TFEYVMLKGINDSPRDAL---NLIKIL-------KGIPAKINL--IPFNPWPGCEYL--- 327
              Y M+    ++  D      L K         KG P ++NL    F P P   +    
Sbjct: 405 IKLYFMVGLPTETEDDVDGIIALAKKARAQVGQGKGRPVQVNLGVATFVPKPHTPFQWEG 464

Query: 328 ----CSDQKDIVTFSECIKRSGY 346
                  ++ I    + + R GY
Sbjct: 465 QLSLEESKQRINRLKQLLPRQGY 487


>gi|320335583|ref|YP_004172294.1| hypothetical protein Deima_3000 [Deinococcus maricopensis DSM
           21211]
 gi|319756872|gb|ADV68629.1| protein of unknown function DUF512 [Deinococcus maricopensis DSM
           21211]
          Length = 489

 Score = 39.9 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 10/152 (6%)

Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPIN 258
           KSL I  D   LSF        T+    ++ R+  E    L +S+H  + DLR  ++   
Sbjct: 134 KSLYIMDDDYRLSFLYGSFVTLTNLTEQDVNRILNENLSPLYVSVHTANQDLRADMMKWW 193

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
           +    +      R       +  +  + V+L G ND        ++ L   P   N+I  
Sbjct: 194 KLKVKDEKATQIRDMIERLESIDLYTQVVLLPGRNDG-EHFDETLEYLASRP---NVISV 249

Query: 319 NPWP-GCEYLCSDQKDIVTF-----SECIKRS 344
              P G     ++  ++ TF      + ++R+
Sbjct: 250 ACVPVGLTDHRTNLAEVRTFTRDEARDVLRRA 281


>gi|294778024|ref|ZP_06743458.1| glycyl-radical enzyme activating family protein [Bacteroides
           vulgatus PC510]
 gi|294448082|gb|EFG16648.1| glycyl-radical enzyme activating family protein [Bacteroides
           vulgatus PC510]
          Length = 302

 Score = 39.9 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 19/106 (17%)

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPF 318
           P E++++  R                +++G+N   ++     + L  +P     INL+P+
Sbjct: 197 PNELILENIRRVAEAD--FPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPY 254

Query: 319 NPW--------------PGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           +                 G +     ++      + +   G  + I
Sbjct: 255 HDIGKGKHAKLGSIYNPKGYKMQTPSEEVQQQCIQILTDYGLKATI 300


>gi|293364736|ref|ZP_06611453.1| pyruvate formate-lyase activating enzyme [Streptococcus oralis ATCC
           35037]
 gi|306830171|ref|ZP_07463355.1| pyruvate formate-lyase activating enzyme [Streptococcus mitis ATCC
           6249]
 gi|307702983|ref|ZP_07639930.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus oralis
           ATCC 35037]
 gi|322375831|ref|ZP_08050342.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. C300]
 gi|331265653|ref|YP_004325283.1| pyruvate-formate lyase activating enzyme [Streptococcus oralis Uo5]
 gi|291316186|gb|EFE56622.1| pyruvate formate-lyase activating enzyme [Streptococcus oralis ATCC
           35037]
 gi|304427697|gb|EFM30793.1| pyruvate formate-lyase activating enzyme [Streptococcus mitis ATCC
           6249]
 gi|307623376|gb|EFO02366.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus oralis
           ATCC 35037]
 gi|321279099|gb|EFX56141.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. C300]
 gi|326682325|emb|CBY99942.1| pyruvate-formate lyase activating enzyme [Streptococcus oralis Uo5]
          Length = 264

 Score = 39.9 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 35/214 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N     +                    E +           I
Sbjct: 37  GCHMRCQYCH--------NPDTWAM-----ETNKSRERTVDDVLTEALRYRGFWGDKGGI 83

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237
            + G GE L   D +  +L   +   G+       TL T           + +  + + V
Sbjct: 84  TVSG-GEALLQIDFLI-ALFTKAKEKGI-----HCTLDTCALPFRNKPRYLEKFNKLMAV 136

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              + + +  ++ +   I+     K      I AC  Y      + +   +V++ G+ D 
Sbjct: 137 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACAQYLS-DIGKPVWIRHVLVPGLTDR 190

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             D + L K +K +    K  ++P++     ++ 
Sbjct: 191 DEDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224


>gi|210630236|ref|ZP_03296326.1| hypothetical protein COLSTE_00210 [Collinsella stercoris DSM 13279]
 gi|210160562|gb|EEA91533.1| hypothetical protein COLSTE_00210 [Collinsella stercoris DSM 13279]
          Length = 272

 Score = 39.9 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 72/241 (29%), Gaps = 34/241 (14%)

Query: 96  CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
             G    IE++   +       V +Q GC + C++C+                       
Sbjct: 17  ATGRVHSIESMGTVDGPGVRFVVFTQ-GCPMRCAYCHNPD---------------TWAVG 60

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS-DSMGLSFSK 214
           S  G     E I      +     +  + +  GEPL   + V    +    +  G    +
Sbjct: 61  SGAGTSVTVERIIDEFESNRPFYRTGGITVTGGEPLLQPEFVGDLFAAMHANPNG----R 116

Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISL-----HAVSNDLRNILVPINRKYPLEMLIDA 269
               L + G+  N  +      V+    L          +    L         + ++  
Sbjct: 117 VHTCLDSCGYAYNPKKPARFDKVLAQTDLVLLDIKHSDPEGHKALTRCAP----DNILAF 172

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL--IPFNPWPGCEYL 327
                      ++   +V++ GI D+  +   L +++      + L  +P++     +Y 
Sbjct: 173 GDELARR--GVKVVIRHVIVPGITDTEEECEALGRLIAPWHNVVGLEMLPYHTMGIVKYE 230

Query: 328 C 328
            
Sbjct: 231 Q 231


>gi|261207618|ref|ZP_05922303.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           TC 6]
 gi|289565130|ref|ZP_06445583.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           D344SRF]
 gi|294614807|ref|ZP_06694702.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1636]
 gi|294617486|ref|ZP_06697117.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1679]
 gi|260078001|gb|EEW65707.1| formate acetyltransferase activating enzyme [Enterococcus faecium
           TC 6]
 gi|289163137|gb|EFD10984.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           D344SRF]
 gi|291592269|gb|EFF23883.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1636]
 gi|291596226|gb|EFF27488.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium
           E1679]
          Length = 253

 Score = 39.9 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 91/275 (33%), Gaps = 56/275 (20%)

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEIL 148
              + IG    IET    +       V  Q GC + C FC+   T      +  TA+E+L
Sbjct: 1   MEEKTIGYVHSIETFGSVDGPGLRFVVFMQ-GCRMRCQFCHNPDTWNIGGGKEYTADELL 59

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
            +    R   G+  G                  I + G GEPL   D + +    A +  
Sbjct: 60  DKAERFRPYWGNKGG------------------ITVSG-GEPLLQIDFLIELFKKAKER- 99

Query: 209 GLSFSKRRITLSTSGFV-----PNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKY 261
                K   TL T G       P  +R  E +     L   +  + N+    L      +
Sbjct: 100 -----KMHTTLDTCGKPFTYEEPFFSRFQELMKYTDLLLFDIKHIDNEEHKKLT----HW 150

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN 319
             E +++  ++   ++    +   +V++   +D     + L   ++ +    ++ ++P++
Sbjct: 151 DNENILEMAQYLSKINK--PVWIRHVLVPERSDYDEYLIRLDNFIQTLSNVDRVEILPYH 208

Query: 320 PWPGCEY------------LCSDQKDIVTFSECIK 342
                ++                ++ +      + 
Sbjct: 209 TMGKYKWETLGLKYPLEGIEPPTKERVENAKRLLH 243


>gi|254880766|ref|ZP_05253476.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           4_3_47FAA]
 gi|319639776|ref|ZP_07994506.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_40A]
 gi|254833559|gb|EET13868.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           4_3_47FAA]
 gi|317388593|gb|EFV69442.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_40A]
          Length = 302

 Score = 39.9 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 19/106 (17%)

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPF 318
           P E++++  R                +++G+N   ++     + L  +P     INL+P+
Sbjct: 197 PNELILENIRRVAEAD--FPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPY 254

Query: 319 NPW--------------PGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           +                 G +     ++      + +   G  + I
Sbjct: 255 HDIGKGKHAKLGSIYNPKGYKMQTPSEEVQQQCIQILTDYGLKATI 300


>gi|307153499|ref|YP_003888883.1| nitrogenase cofactor biosynthesis protein NifB [Cyanothece sp. PCC
           7822]
 gi|306983727|gb|ADN15608.1| nitrogenase cofactor biosynthesis protein NifB [Cyanothece sp. PCC
           7822]
          Length = 483

 Score = 39.9 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 85/220 (38%), Gaps = 39/220 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C++C         N +   ++ +VL         P     + +VI     +++ + 
Sbjct: 66  CNIQCNYCNRKYD--CANESRPGVVSEVLT--------PEEAAHKVLVIAGKIPQMTVLG 115

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241
           + G G+PL N     ++  + +D         ++ LST+G      I R+ E     + I
Sbjct: 116 IAGPGDPLANPKQTFRTFELVADKA----PDIKLCLSTNGLMLPDYIDRIKELNVDHVTI 171

Query: 242 SLHAVSNDLRNILVPIN----RKYP-LE----------MLIDACRHYPGLSNARRITFEY 286
           +++ +  ++   + P      ++Y  +E            ++A R    L     +    
Sbjct: 172 TINMIDPEIGTKIYPWVRYNRKRYTGIEGVKILHERQMEGLEALREADILCKVNSV---- 227

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325
            ++ GIND       + ++++   A I N++P    P   
Sbjct: 228 -LIPGINDH--HLQEVNEVIRSKGAFIHNIMPLISAPEHG 264


>gi|123967114|ref|YP_001012195.1| putative organic radical activating protein [Prochlorococcus
           marinus str. MIT 9515]
 gi|123201480|gb|ABM73088.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. MIT 9515]
          Length = 223

 Score = 39.9 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 41/170 (24%)

Query: 122 VGCSLTCSFCYTG----TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
            GC++ C +C T      +K    ++ +EI+ ++  AR     F                
Sbjct: 31  AGCNVGCPWCDTKHSWDKEKF-PLISIQEIINEIKRARKQGASF---------------- 73

Query: 178 KISNIVMMGMGEPL-CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
               +V+ G GEPL  N DN+ ++++  + +   + S  +I + TSG             
Sbjct: 74  ----LVITG-GEPLHHNLDNLCQAINEETSTE--NQSPIKIHIETSGVSNLSGSF---DW 123

Query: 237 VMLAISLHAVS--------NDLRNILVPINRK-YPLEMLIDACRHYPGLS 277
           + L+   H           N+L+ I+       + +++  +    Y   S
Sbjct: 124 ITLSPKRHQPPKTYFLKNCNELKIIINDQKDIDFAIDIKQEIMNKYQNSS 173


>gi|312863599|ref|ZP_07723837.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           vestibularis F0396]
 gi|322516171|ref|ZP_08069104.1| pyruvate formate-lyase activating enzyme [Streptococcus
           vestibularis ATCC 49124]
 gi|311101135|gb|EFQ59340.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           vestibularis F0396]
 gi|322125347|gb|EFX96702.1| pyruvate formate-lyase activating enzyme [Streptococcus
           vestibularis ATCC 49124]
          Length = 266

 Score = 39.9 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 73/215 (33%), Gaps = 37/215 (17%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N     +      +   +         E +       +   I
Sbjct: 35  GCKMRCQYCH--------NPDTWAM-----ESNKAVERTVEDVLDEALRFRHFWGEHGGI 81

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--------PNIARVGEE 234
            + G GE +   D V     + +++  L       TL T GFV          + ++   
Sbjct: 82  TVSG-GEAMLQIDFVTA---LFTEAKKLGI---HCTLDTCGFVYRNTPEYHEVVDKLLAV 134

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             ++L + +  +  +          + P + +++  ++         +   +V++ G+ D
Sbjct: 135 TDLVL-LDIKEIDPEQ----HKFVTRQPNKNILEFAQYLSDK--QVPVWIRHVLVPGLTD 187

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
                + L + +K +    K  ++P++     ++ 
Sbjct: 188 FDEHLVKLGEFVKTLKNVDKFEILPYHTMGEFKWR 222


>gi|262273034|ref|ZP_06050853.1| lysine 2,3-aminomutase [Grimontia hollisae CIP 101886]
 gi|262222944|gb|EEY74250.1| lysine 2,3-aminomutase [Grimontia hollisae CIP 101886]
          Length = 340

 Score = 39.9 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 68/219 (31%), Gaps = 42/219 (19%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
                   ++  +    K+R  + V    GC++ C +C        R+            
Sbjct: 92  DPLEEQGNDVPGLLHKYKNRVLMIVKG--GCAINCRYC------FRRHF----------- 132

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSIASDSMG 209
                 +  G       +         + V++  G+PL   D+    + +++        
Sbjct: 133 --PYQDNKGGKSTWREAIAYLQQHPEVDEVILSGGDPLMAKDHELQWLIEAIESVPHIKR 190

Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
           L     R+ +     +P+       + V LA  L       R  +V +        + D 
Sbjct: 191 LRI-HTRLPV----VIPS------RVTVTLANMLATS----RLNIVLVTHINHANEIDDE 235

Query: 270 CRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKIL 306
            R          +T   + V+L+G+NDS     NL   L
Sbjct: 236 LRAVMATLKHAGVTLLNQGVLLRGVNDSVEALKNLSNRL 274


>gi|145639765|ref|ZP_01795367.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           PittII]
 gi|145271133|gb|EDK11048.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae
           PittII]
 gi|309750405|gb|ADO80389.1| Pyruvate formate-lyase activating enzyme [Haemophilus influenzae
           R2866]
          Length = 246

 Score = 39.9 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL-- 327
            Y    N       YV++ G  DS  D   L + ++G+    K+ L+P++     ++   
Sbjct: 155 KYLQKRNQH-TWIRYVVVPGYTDSDHDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTL 213

Query: 328 ----------CSDQKDIVTFSECIKRSGYSS 348
                        ++ +      ++  G++ 
Sbjct: 214 GLDYELEDVLPPTKESLDHIKTILEGYGHTV 244


>gi|253682419|ref|ZP_04863216.1| heme biosynthesis [Clostridium botulinum D str. 1873]
 gi|253562131|gb|EES91583.1| heme biosynthesis [Clostridium botulinum D str. 1873]
          Length = 456

 Score = 39.9 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 74/196 (37%), Gaps = 21/196 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+    K                AR ++    G + I+ ++  S
Sbjct: 96  ALCLNVTHDCNLRCKYCFADEGKYHG-------------ARKVMSPEVGKKAIDFVIAHS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             RK   + + G GEPL     +K+ ++ A +   +     R T++T+  + N   +   
Sbjct: 143 GPRKNIEVDLFG-GEPLIAIKEIKEIIAYAREQEKIHNKVIRFTMTTNALLLNDEIMEYM 201

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVML 289
             E   ++L+I     SND   I V  +  Y  + ++   +      +  +         
Sbjct: 202 DKEMGNIVLSIDGRKESNDNTRIRVDGSGTY--DAILPKIKEMVDKRDKSKQYYVRGTFT 259

Query: 290 KGINDSPRDALNLIKI 305
           +   D   D  +L  +
Sbjct: 260 RDNTDFYYDVKHLADL 275


>gi|251779583|ref|ZP_04822503.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243083898|gb|EES49788.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 236

 Score = 39.9 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 84/260 (32%), Gaps = 52/260 (20%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC-----YTGTQKLVRNLTAEEILLQVL 152
           G    IET+ + +     + V  Q GCSL C +C     +T         T E+++ ++ 
Sbjct: 4   GRIHSIETMGLVDGPGIRVVVFFQ-GCSLRCKYCHNPDTWTYDGGEE--YTPEDLVKKI- 59

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                                        +   G GEPL   + + + L       G++ 
Sbjct: 60  ----------------ERYKTYFESSNGGVTFSG-GEPLRQPEFLLEVLK-LCKERGIN- 100

Query: 213 SKRRITLSTSGFVPNIARVGEEIGV--MLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
                 L TSGF        E +    ++   +     D             ++  +   
Sbjct: 101 ----TCLDTSGF--GFEEYDEILKYVDLVLFDIKHYDEDG----YKNVTYMDIDKSLKFL 150

Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328
                  +   I   +V++ G+ D      NL K +  I    K+ L+P++     +Y  
Sbjct: 151 E--VVQDSKIPIWIRHVVVPGLTDGEEHIRNLKKYISNINGVEKVELLPYHLLGKNKY-- 206

Query: 329 SDQKDIVTFSECIKRSGYSS 348
               D++ F   ++  G  +
Sbjct: 207 ----DVLKFKYPLE--GVPA 220


>gi|128231|sp|P10390|NIFB_KLEPN RecName: Full=FeMo cofactor biosynthesis protein nifB
 gi|43839|emb|CAA31683.1| unnamed protein product [Klebsiella pneumoniae]
          Length = 468

 Score = 39.9 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 56/148 (37%), Gaps = 20/148 (13%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
           P    ++   +     ++S + + G G+PL N     ++L +  +         ++ LST
Sbjct: 82  PEQAVVKVRQVAQAIPQLSVVGIAGPGDPLANIARTFRTLELIRE----QLPDLKLCLST 137

Query: 222 SGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYP--------LEMLI 267
           +G V    + R+ +     + ++++ +  ++   +         +Y         +   +
Sbjct: 138 NGLVLPDAVDRLLDVGVDHVTVTINTLDAEIAAQIYAWLWLDGERYSGREAGEILIARQL 197

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDS 295
           +  R          +    V++ GINDS
Sbjct: 198 EGVRRLTAK--GVLVKINSVLIPGINDS 223


>gi|312880406|ref|ZP_07740206.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783697|gb|EFQ24095.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260]
          Length = 603

 Score = 39.9 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 92/275 (33%), Gaps = 45/275 (16%)

Query: 42  IYVRGIRDFQGMSDISQE--VRHLLNQHFSIIYPEI------VDEKISCDGTRKWLLRFP 93
           ++   +R   G+    +E  +R  L +   +  P +      V  ++  D          
Sbjct: 175 LWPSLVRTLSGLKGCPREERLRA-LAELPGVYVPALGIPRTPVRRQVLAD--------LD 225

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL-VRNLTAEEILLQVL 152
              +   + + +  I       + V    GC+  C FC  G     VR  +A  +  QV 
Sbjct: 226 EGFLQDRMLVPSTAIVHDR---VAVQVFRGCTRGCRFCQAGMIDRPVRERSAASVCDQV- 281

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
                L DF G E++  +        ++     G+ E L   D + +       S+ LS 
Sbjct: 282 ---KRLLDFTGWEEVGFLS-------LATCDWSGLEEALVRLDEILR-----PRSIKLSL 326

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
              R+   +      +  + +     L  +  A +  LR+++         E  I A   
Sbjct: 327 PSLRMDAFSVELAAKLETLRKG---GLTFAPEAGTQRLRDVINKGV----TEEDIRASLE 379

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
                   R+   Y M+    ++  D   +++I K
Sbjct: 380 ATFAHGWDRVKL-YFMMGLPTETEEDLEGIVRIAK 413


>gi|160946256|ref|ZP_02093467.1| hypothetical protein PEPMIC_00218 [Parvimonas micra ATCC 33270]
 gi|158447779|gb|EDP24774.1| hypothetical protein PEPMIC_00218 [Parvimonas micra ATCC 33270]
          Length = 242

 Score = 39.9 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 78/234 (33%), Gaps = 30/234 (12%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
           IG    IET+ + +          Q GC L C +C+                 Q L  + 
Sbjct: 3   IGRLHSIETMGLVDGPGIRTIFFLQ-GCPLRCLYCHNPD-------------TQAL--QG 46

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
                P     +     +  R    +   G GEPL   + + ++L +     G +     
Sbjct: 47  GTEITPDFVLSKAERYKTYYRDNGGVTFSG-GEPLLQGEFLAETLKLL-KENGYN---TC 101

Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           I  S  G       + E     + + + + SN     +V   +       ++    Y   
Sbjct: 102 IDTSGYGNEKYFKEILENTD-TILLDVKSFSNQGYIEMVKQ-KMDGFYKFLEYIEKYY-- 157

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNPWPGCEYL 327
               +I F +VM+ G  D+       I+I+K    K   + ++P++     +Y 
Sbjct: 158 --KGKIWFRHVMVPGFTDNKESMDKFIEIIKPYRDKIERVEILPYHIMGVAKYK 209


>gi|52144799|ref|YP_082030.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase
           activating enzyme) [Bacillus cereus E33L]
 gi|196040151|ref|ZP_03107453.1| pyruvate formate-lyase 1-activating enzyme [Bacillus cereus
           NVH0597-99]
 gi|225862489|ref|YP_002747867.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB102]
 gi|51978268|gb|AAU19818.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase
           activating enzyme) [Bacillus cereus E33L]
 gi|196029006|gb|EDX67611.1| pyruvate formate-lyase 1-activating enzyme [Bacillus cereus
           NVH0597-99]
 gi|225788466|gb|ACO28683.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB102]
          Length = 243

 Score = 39.9 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 50/243 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N    EI       +                +P +      I
Sbjct: 28  GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234
            + G GEPL   D +   + +      +       T+ +SG        F   +  + E 
Sbjct: 74  TVSG-GEPLLQLDFL---IELFKKCKEIGI---HTTIDSSGGCYSEEPEFQNKLDILMEY 126

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             ++L    H  S   R +    N        I     Y    N   I   +V++ G+ D
Sbjct: 127 TDLVLLDLKHIDSKKHRKLTGKPN------EHILQFARYLSDKNK-PIWVRHVLVPGVTD 179

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340
           +  D   L   ++ +    K+ ++P++          G +Y         +K++      
Sbjct: 180 NEEDLQKLSSFIQSLSNVQKVEVLPYHKLGVYKWEALGHKYPLANVEPPTEKNVEQARHI 239

Query: 341 IKR 343
           ++ 
Sbjct: 240 LQA 242


>gi|229074375|ref|ZP_04207412.1| hypothetical protein bcere0024_4050 [Bacillus cereus Rock4-18]
 gi|229095162|ref|ZP_04226155.1| hypothetical protein bcere0020_4190 [Bacillus cereus Rock3-29]
 gi|229114104|ref|ZP_04243529.1| hypothetical protein bcere0017_4090 [Bacillus cereus Rock1-3]
 gi|228669374|gb|EEL24791.1| hypothetical protein bcere0017_4090 [Bacillus cereus Rock1-3]
 gi|228688243|gb|EEL42128.1| hypothetical protein bcere0020_4190 [Bacillus cereus Rock3-29]
 gi|228708737|gb|EEL60873.1| hypothetical protein bcere0024_4050 [Bacillus cereus Rock4-18]
          Length = 243

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 77/243 (31%), Gaps = 50/243 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N    EI       +                +P +      I
Sbjct: 28  GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234
            + G GEPL   D +   + +      +       T+ +SG        F   + ++ + 
Sbjct: 74  TVSG-GEPLLQLDFL---IELFKKCKEVGI---HTTIDSSGGCYSEEPEFQQKLDKLMDY 126

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             ++L    H  S   R +    N        I     Y    N   I   +V++ G+ D
Sbjct: 127 TDLVLLDLKHIDSKKHRKLTGKSN------EHILQFARYLSDKNK-PIWVRHVLVPGVTD 179

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340
           +  D   L   ++ +    K+ ++P++          G +Y         +K++      
Sbjct: 180 NEEDLQKLSSFIQSLSNVQKVEVLPYHKLGVYKWEALGHKYPLANVEPPTEKNVEQARHI 239

Query: 341 IKR 343
           +K 
Sbjct: 240 LKA 242


>gi|124516698|gb|EAY58206.1| putative radical SAM family protein [Leptospirillum rubarum]
          Length = 530

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 27/195 (13%)

Query: 99  GPVEIETVY--IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR--NLTAEEILLQVLLA 154
               +E+V+       R  + + ++ GC   CSFC     +  R      E+I+ +    
Sbjct: 232 DLRYLESVFEGHEFYHRTMVGIQTKRGCPYGCSFCLYTYIEGKRVYYRDPEDIVNE---M 288

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
           R     +              G       +  + E +     + K+L       G+  S 
Sbjct: 289 RQYYDRWGIRNFWFADAQFIPG-------VKAIPEAMD----LLKALR----DSGMKISW 333

Query: 215 RRITLSTSGFVPNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
               + TS   P +A++  E G+  L +S+ + S ++ + L      + L+ L++ CR+ 
Sbjct: 334 SGY-IRTSLISPEMAKLMVESGMGDLEVSVTSGSQEILDSLR---MGFRLDQLVEGCRNL 389

Query: 274 PGLSNARRITFEYVM 288
                   I   Y +
Sbjct: 390 RDAGYKGNIILNYSL 404


>gi|307720582|ref|YP_003891722.1| Radical SAM domain-containing protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978675|gb|ADN08710.1| Radical SAM domain protein [Sulfurimonas autotrophica DSM 16294]
          Length = 318

 Score = 39.9 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 71/192 (36%), Gaps = 28/192 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C +C      L  + T                +    ++I   +   +  KI  I 
Sbjct: 32  CNFDCLYCE-----LAPSATV-----------DKQTEVVSVDEIINELTKHLHDKIDVIT 75

Query: 184 MMGMGEP-LCNF-DNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVML 239
           +   GEP L  + D +  +++           K  I  +++  V     A + +   V L
Sbjct: 76  LTANGEPTLYPYLDELIDAINKIKGET-----KTLILTNSASLVDEKVFASLLKLDEVKL 130

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           ++   AVS+D+   +   +    +E ++     +   +   ++  E + + G+ND+  + 
Sbjct: 131 SLD--AVSSDIFKKIDRPHPSITVENVVQKVIEF-SQTYKGKLFIEILFVHGLNDTKEEI 187

Query: 300 LNLIKILKGIPA 311
             L ++L  I  
Sbjct: 188 QKLNEVLHKIKC 199


>gi|320535961|ref|ZP_08036025.1| pyruvate formate-lyase 1-activating enzyme [Treponema phagedenis
           F0421]
 gi|320147188|gb|EFW38740.1| pyruvate formate-lyase 1-activating enzyme [Treponema phagedenis
           F0421]
          Length = 239

 Score = 39.9 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 59/190 (31%), Gaps = 31/190 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N             +         E  E ++      +   +
Sbjct: 26  GCPLRCKYCH--------NCDT-------WFQKDAKFVETAEETFEKIIKYKRFIRSGGV 70

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--LA 240
            + G GEPL   + V +         G+        + TSG   N   V E + V   + 
Sbjct: 71  TVTG-GEPLMQPEYVCELFK-LCKKEGI-----HTAIDTSGIYLN-DAVREALKVTDLVL 122

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +   A   +    L     + P+   +              +   +V++ GI D P D  
Sbjct: 123 LDYKAADPETHLEL-TGVPQQPILNFLAYLCEI-----NMPMWIRHVVIPGITDKPEDLE 176

Query: 301 NLIKILKGIP 310
            +   +K +P
Sbjct: 177 KIASFIKTLP 186


>gi|307705441|ref|ZP_07642296.1| hypothetical protein ydeM [Streptococcus mitis SK597]
 gi|307620976|gb|EFO00058.1| hypothetical protein ydeM [Streptococcus mitis SK597]
          Length = 352

 Score = 39.9 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 19/165 (11%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+LTCS+C+   +    +L++E              D     +     +     K  +I 
Sbjct: 3   CNLTCSYCFENDKDRKPSLSSE-------------YDGKKIVNFILDELNFKKYKSLDIC 49

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE----IGVML 239
             G GEPL NF  ++       + + +  S   IT  T  F   I    +     I V  
Sbjct: 50  FTG-GEPLYNFQFIRNLCETLDEKLAIPISYTLITNGTI-FTNKIMSFLDCHNFAIQVSF 107

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
               H  + +  N L        +  L      Y  LS   R+  
Sbjct: 108 DGDEHYHNLERCNRLGKGTYHRIINNLSVMLEKYKNLSIQARVNI 152


>gi|284162142|ref|YP_003400765.1| lysine 2,3-aminomutase YodO family protein [Archaeoglobus profundus
           DSM 5631]
 gi|284012139|gb|ADB58092.1| lysine 2,3-aminomutase YodO family protein [Archaeoglobus profundus
           DSM 5631]
          Length = 368

 Score = 39.9 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 114/333 (34%), Gaps = 78/333 (23%)

Query: 44  VRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-------CDGTRKWLLRFPA-- 94
           VR + + +   +I Q+V   L +   I    +    +S        D  ++  +  P   
Sbjct: 11  VRTVDELKEYVNIPQDVEEKLRKVVEIHPMNVTRYYLSLIDWNDSNDPIKRMAIPSPDEL 70

Query: 95  ----RCIGGPVEIETVYIP---EKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEE 146
                      E E   +     K   T  V +   C++ C +C+      L R+    E
Sbjct: 71  SCLEGDYDTSGEHENTKMRGLQHKYSETALVLATNRCAVYCRYCFRKRMVGLTRD----E 126

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP--LCNFDNVKKSLSIA 204
           ++ ++  A   + +                 +++N+++ G G+P  L N   +K+ L+  
Sbjct: 127 VIRRLDRAVKYIEEH---------------EEVTNVLISG-GDPFVLDN-KIIKRFLNKL 169

Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH--------AVSNDLRNILVP 256
            +   L F                 R G  + V   + L+            +L+ I V 
Sbjct: 170 VEIPHLDF----------------IRFGSRVPVTFPMRLNDDDLPEILGEFAELKRIYVV 213

Query: 257 INRKYP---LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
            +  +P    E    A +    L N   ++ + V+LKG+ND P     L ++        
Sbjct: 214 THYNHPKEFTEESTGAIKRL--LDNGIVVSNQAVLLKGVNDDPYTLAELHRL-------- 263

Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346
            L+ +   P   + C   K +    +   + GY
Sbjct: 264 -LVRYGIVPYYVFQCRPVKRVKGIFQVPLKEGY 295


>gi|15668274|ref|NP_247067.1| hypothetical protein MJ_0103 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2495799|sp|Q57567|Y103_METJA RecName: Full=Uncharacterized protein MJ0103
 gi|1498868|gb|AAB98083.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 433

 Score = 39.9 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 26/195 (13%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           + E+ R  + V    GC+L C FC     +  +    +  +    L  +        E+ 
Sbjct: 102 LIERGRNIIQVRGHCGCNLNCIFCSVDEGEFSKTRKNDYYVDLEYLIENYKKIVDFKENK 161

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNF---DNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
                             G GEP   +   D V++   I     G+      +++ T+G 
Sbjct: 162 FIEAHLD-----------GQGEPSLYYPLVDLVQELAEINKKGNGI------VSMQTNGT 204

Query: 225 V---PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           V     I  + E     + +S++A  ++    ++   R Y ++ ++D   +    ++   
Sbjct: 205 VLNYKLIDELEEAGLHRINLSINA-LDEKMAKMLSGRRDYNIKKILDIAEYI--KNSKIH 261

Query: 282 ITFEYVMLKGINDSP 296
           +    ++L  IND  
Sbjct: 262 LLIAPLLLPNINDEE 276


>gi|332159105|ref|YP_004424384.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Pyrococcus sp. NA2]
 gi|331034568|gb|AEC52380.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Pyrococcus sp. NA2]
          Length = 483

 Score = 39.9 bits (92), Expect = 0.73,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 74/190 (38%), Gaps = 24/190 (12%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+ +C +CY     L  N               L+      + I+ ++  S    I+ I 
Sbjct: 98  CNFSCVYCYGNK-GLYGNEKP-----------KLMNLETAKKSIDLLLQKSSN--ITIIT 143

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE--IGVML 239
             G GEPL NF  +K+++  A         K   T++T G++  P IA    E    + +
Sbjct: 144 FFG-GEPLLNFKVIKEAVEYAKKRANELNKKVSFTITTKGYLLTPEIADFLLENNFDINI 202

Query: 240 AISLHAVSNDLRNILVPINRKYPL--EMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++  +   ++   +L   +  Y +    +    +    L   + I+ +  ++    D  +
Sbjct: 203 SLDGYRELHNKNRLLADGSPTYNVVANNIKYLLKRAKELGRFKNISIKATLMP---DQVK 259

Query: 298 DALNLIKILK 307
           +A  + K +K
Sbjct: 260 EAYKVYKHIK 269


>gi|256810799|ref|YP_003128168.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256793999|gb|ACV24668.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 438

 Score = 39.9 bits (92), Expect = 0.73,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 83/237 (35%), Gaps = 42/237 (17%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC   C FC                     LAR++       +  + M +   G K++ +
Sbjct: 174 GCPRRCRFC---------------------LARAIYYPPRFRKLNDLMYLAEEGIKVNKV 212

Query: 183 VMMGMGEP-LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
             + +  P + ++  + +  +   D  G+  S   +   T     ++ R+ +     L I
Sbjct: 213 NKVALIAPSVGDYKYIVELCNFL-DEKGVQISPSSLRADT--LNDDLMRILK--PKTLTI 267

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           +  A S  LR  +     +  +   I+  + Y    N  ++   Y M+    ++  D   
Sbjct: 268 APEAGSERLREFIKKDINEGDIFNAIELAKKY----NVEKVKL-YFMVGIPTETDEDIEE 322

Query: 302 LIKILKGIP-------AKIN-LIP--FNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348
           LI + K I          +N +IP     +   E+  S +K I    + +K+     
Sbjct: 323 LITLTKKIKKEIRRVEISVNPMIPKPHTDFEEEEFDLSSKKKIKYIEKALKKENIKV 379


>gi|186473378|ref|YP_001860720.1| radical SAM domain-containing protein [Burkholderia phymatum
           STM815]
 gi|184195710|gb|ACC73674.1| Radical SAM domain protein [Burkholderia phymatum STM815]
          Length = 360

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 14/142 (9%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+       L + L  V+ ++R  ++P     P+   ++A R    +    +++  Y+
Sbjct: 214 FERMKASGIDTLGMHLEVVTPEVRARVMPGKASVPISRYMEAFRAAVAVFGKGQVS-TYI 272

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSE-CIKR 343
           +  G+ D+    L++ + L  I     ++PF P  G                F +  ++ 
Sbjct: 273 L-AGLGDTAEAILSMSRELVEIGVYPFVVPFVPISGTPLEDHPAPS----HAFMKSILEP 327

Query: 344 SGYSSPIR--TPRGLDILAACG 363
            G  + +R    R  DI A CG
Sbjct: 328 LG--AMLRSAQMRSADIKAGCG 347


>gi|227833911|ref|YP_002835618.1| pyruvate formate lyase activating enzyme [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184914|ref|ZP_06044335.1| pyruvate formate lyase activating enzyme [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454927|gb|ACP33680.1| pyruvate formate lyase activating enzyme [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 289

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 93/306 (30%), Gaps = 81/306 (26%)

Query: 71  IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130
             PE++  + S D             +     +  V  P  +R T+ +S   GC L C +
Sbjct: 36  TRPELMQARRSGD----------VALVHSWELVTAVDGP-GTRMTMFMS---GCPLRCQY 81

Query: 131 CYTGTQKLVRNLTAEEI----LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
           C+        N    E+    L ++      +  +       G  +   G          
Sbjct: 82  CH--------NPDTMEMKVGTLERIEDVVKRIKRYKPVFKASGGGLTISG---------- 123

Query: 187 MGEPLCNFDNVKKSLSIAS---DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
            GEPL                    G+       T+ TSG++    R  +   + L +  
Sbjct: 124 -GEPLFQ----IAFARRLLKEVHDAGI-----HTTIDTSGYLGARLRDEDLDNIDLVLLD 173

Query: 244 HAVSND------LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
               ++       R  L P          ++A          + +   +V++ G+ D P 
Sbjct: 174 VKSGDEETYKKVTRRELQPT---IDFGDRLNAI--------GKPVWIRFVVVPGLTDGPE 222

Query: 298 DALNLIKILKGIPAKINLI---PFNP-----WPGCEY-------LCSDQKDIVTFSECIK 342
           +  N+ KI+    + I  I   PF+      W    Y            +D+    E  +
Sbjct: 223 NVANVAKIVSRWKSNIERIEVLPFHNMGADKWHELGYPYTLEDTKPPKPEDVEEIREVFR 282

Query: 343 RSGYSS 348
           + G+  
Sbjct: 283 KEGFVV 288


>gi|164687599|ref|ZP_02211627.1| hypothetical protein CLOBAR_01240 [Clostridium bartlettii DSM
           16795]
 gi|164603373|gb|EDQ96838.1| hypothetical protein CLOBAR_01240 [Clostridium bartlettii DSM
           16795]
          Length = 248

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 79/246 (32%), Gaps = 52/246 (21%)

Query: 123 GCSLTCSFCYTGTQKLVRNL----TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           GC L C +C+        N     T +E+   ++  ++ +    G     G         
Sbjct: 28  GCPLRCKYCH-NRDTWKTNCGKEYTVDELAQDIMKYQTYMQFSGGGVTASGGEATLQAEF 86

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEEIG 236
           ++                      + +    L        L T+GFV    + ++ +   
Sbjct: 87  VT---------------------ELFAKCKELGI---HTCLDTAGFVDIEKVDKLLDYTD 122

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           ++L + +  + N+    L  +      E  +   +H    +    +    V++ GI D  
Sbjct: 123 LVL-LDIKHIDNEKCKQLTGVGN----EKALKLAKHLDERN--IPVWIRQVLVPGITDDQ 175

Query: 297 RDALNLIKILKGIPA--KINLIPFN-------PWPGCEY-----LCSDQKDIVTFSECIK 342
           +D   L + +  +    ++  +P++          G EY          ++I   S+ ++
Sbjct: 176 KDLEKLGQFVSTLNNVDRVEFLPYHGMGIHKWENMGFEYELKDVQEPTPEEIKRASDIVE 235

Query: 343 RSGYSS 348
             G   
Sbjct: 236 SFGVEV 241


>gi|327398530|ref|YP_004339399.1| glycyl-radical enzyme activating protein family [Hippea maritima
           DSM 10411]
 gi|327181159|gb|AEA33340.1| glycyl-radical enzyme activating protein family [Hippea maritima
           DSM 10411]
          Length = 298

 Score = 39.9 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 77/241 (31%), Gaps = 41/241 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C  C+           A E++ Q              E IE +   S   +   I 
Sbjct: 83  CTM-CGKCWQSCP-----TNALEVVGQYY---------KTDELIEELTKDSAFFEGGGIT 127

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           + G GE    ++ + + +       GL      + L T+G+      +     + L +  
Sbjct: 128 ISG-GEAFVQYEFLMELIK------GLKAKHLHLALDTTGYTDKEKLLSTVEFIDLYLYD 180

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
             V +  ++          +   + A           +I     ++  IND   +    I
Sbjct: 181 LKVMDPAKHKQYTGVDNTIILKNLKALDE-----KGAQIAIRIPIIPTINDDQENIKATI 235

Query: 304 KILKGIP--AKINLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSGYSSP 349
           + LK +     ++L+P++     +Y                 +++    E  ++ G+   
Sbjct: 236 EFLKQLNNVVSVDLLPYHSMMVDKYKRLKMPFLLGDIKKPSDEEMEELKETFQKEGFKVN 295

Query: 350 I 350
           I
Sbjct: 296 I 296


>gi|255305100|ref|ZP_05349272.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile ATCC 43255]
          Length = 316

 Score = 39.9 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 23/187 (12%)

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           R    +   G GEPL   + +     +      ++     I  S         ++  +I 
Sbjct: 134 RSNGGVTFSG-GEPLLQHEFL---HEVLLKCHEVNI-HTAIETSACVSNEVFNKIFNDID 188

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
                  H      R         Y  +++++   +        R+     ++ G NDS 
Sbjct: 189 FAFIDIKHM----DREKHKEQTGVYN-DLILENISNLANSDWNGRLVLRVPVISGFNDSV 243

Query: 297 RDALNLIKIL-KGIPAKINLIPFNPWPGC-------EYLCSDQKDI-----VTFSECIKR 343
            +  ++I  + K    +INL+PF+            EY  SD+ D+         +    
Sbjct: 244 ENISDIISFMHKNNLVEINLLPFHRLGESKWIQLGKEYEYSDKGDVDEGHLEELQDIFLD 303

Query: 344 SGYSSPI 350
           +G +  +
Sbjct: 304 NGIACYV 310


>gi|51893571|ref|YP_076262.1| hypothetical protein STH2433 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857260|dbj|BAD41418.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 483

 Score = 39.9 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 84/259 (32%), Gaps = 44/259 (16%)

Query: 90  LRFPARCIGGPVEIETVY-IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148
           LR        P E E V   P      +C++    C+L C++C+         +      
Sbjct: 83  LRAQGLLFAPPPEWEPVMPKPGDPLRAICLNVAHACNLRCTYCFADDGTYGGPV------ 136

Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208
                   L+      + ++ ++  S  R +  +   G GEPL N+  V+++++ A    
Sbjct: 137 -------KLMPFEVARQAVDLLIRLSGPRPVCEVDFFG-GEPLMNWKVVRETIAYAR-EA 187

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHAVSNDLRNILVPINRKYPLEM 265
           G    K      T+        + +E+    V L +SL     D R  +    R      
Sbjct: 188 GRRAGKAFTFTLTTNATLLTPEILDELDREQVSLILSL-----DGRPEVHDAKRSGSSRR 242

Query: 266 LIDACRHYPGLS-NARRITFEYVMLKGIN-----------------DSPRDALNLIKILK 307
           + +A R          +  +EY   +G                   D   DAL ++  + 
Sbjct: 243 VEEAIRMVLERRAPGGKPVWEYGAAQGATGRGAYAVLRGTYTADNLDFAEDALYMVDRMH 302

Query: 308 GIPAKINLIPFNPWPGCEY 326
                 +L P    P   Y
Sbjct: 303 SP--YFSLEPVVATPDAPY 319


>gi|261402464|ref|YP_003246688.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
 gi|261369457|gb|ACX72206.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
          Length = 433

 Score = 39.9 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 69/195 (35%), Gaps = 26/195 (13%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           + E+ R  + V    GC+L C FC     +  +                   D       
Sbjct: 102 LIERGRNIIQVRGHCGCNLNCIFCSVDEGEFSK-----------TRKNDYYVDLDYLISE 150

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNF---DNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
              +      K     + G GEP   +   D V+  + I     G+      +++ T+G 
Sbjct: 151 YKKLSEFKENKYLEAHLDGQGEPSLYYPLVDLVQNLVDINKKGNGI------VSMQTNGT 204

Query: 225 V---PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           V     I  + E     + +S++A  ++    ++   + Y +E ++D   +    ++   
Sbjct: 205 VLSYKLIDELEEVGLHRINLSINA-LDEKMAKMLSGRKDYNVEKILDLAEYI--KNSKIH 261

Query: 282 ITFEYVMLKGINDSP 296
           +    ++L  +ND+ 
Sbjct: 262 LLVAPLLLPNVNDNE 276


>gi|325663171|ref|ZP_08151621.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|331086761|ref|ZP_08335838.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|325470625|gb|EGC73855.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|330409927|gb|EGG89362.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 257

 Score = 39.5 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 74/239 (30%), Gaps = 41/239 (17%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E         ++       E +EG        +   +
Sbjct: 28  GCPMRCLYCH--------NPDTWE--------PNIGEQQSVEEVLEGFYSNLPFYRHGGV 71

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
            + G GEP+   D + +  +          +  S      S + F+  + ++ +    ++
Sbjct: 72  TVTG-GEPMMQMDFLIELFTKLKKDHIHTCIDTSGIMFQPSNAVFMEKLEKLLQVTD-LI 129

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            + +  ++ +    L   +        I A   Y    N   I   +V++ GI       
Sbjct: 130 MLDIKHINGEEHKKLTAHSN-----ERILAFARYLDEQN-IPIWVRHVIVPGITFYQEYL 183

Query: 300 LNLIKILKGIPAK--INLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRS 344
             L   L  +     ++++P++     +Y                ++D       +  +
Sbjct: 184 EQLGTFLGTLNNVKALDILPYHSMGKAKYDNLHMDYPLKDTPEPSKEDAEAAKRVVLAA 242


>gi|217967612|ref|YP_002353118.1| radical SAM protein [Dictyoglomus turgidum DSM 6724]
 gi|217336711|gb|ACK42504.1| Radical SAM domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 200

 Score = 39.5 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 68/192 (35%), Gaps = 24/192 (12%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C FC       ++N T      QV   R +L   P  ++I G +     R    +V
Sbjct: 20  CTNRCVFC-------IKNFT-----DQVGNKRLVLDREPSSKEIIGSLNKIDLRTYKEVV 67

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV---MLA 240
             G GEPL   + VK       D         RI  +  G V N   +  EI      ++
Sbjct: 68  FCGFGEPLIRVEVVKSVSRFIKD--MFPHLPIRIDTNGHGNVFNQRNILPEIAPYIDAIS 125

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           ISL+A   +  + +             +A   +  LS   +I  + V    +N    D  
Sbjct: 126 ISLNAEDKEKYDKISRPV----FSDAYNAVIEFIKLS---KIYIKDVAASVVNLPTVDIE 178

Query: 301 NLIKILKGIPAK 312
              KI K +  K
Sbjct: 179 RCEKIAKDLGVK 190


>gi|222152350|ref|YP_002561525.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis
           0140J]
 gi|222113161|emb|CAR40596.1| putative pyruvate formate-lyase activating enzyme [Streptococcus
           uberis 0140J]
          Length = 257

 Score = 39.5 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 17/208 (8%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKIS 180
           GC L C +C     +       EE+L         +G+     ++   V+       +  
Sbjct: 29  GCPLRCPWCANPESQKK---APEEMLTADCKGHETVGEQKTVSEVMEEVLKDRDFYEESG 85

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
             V +  GE    +    K++   + + GL      I  +      +   + + +  +  
Sbjct: 86  GGVTLSGGEIFAQYP-FAKAILKEAKANGL---HTAIETTAYAKPEHFKDLIQYVDFIYT 141

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
              H   + LR+  V       +   I     +   S  + I     ++   NDS  DA 
Sbjct: 142 DLKHY--DSLRHRQVTGVTNNLIVDNI-----HYAFSQGKEIVLRIPVIPDFNDSLEDAQ 194

Query: 301 NLIKILKGIPA-KINLIPFNPWPGCEYL 327
              ++   +   K+ L+PF+ +   +Y 
Sbjct: 195 AFSQLFNQLDIDKVQLLPFHQFGENKYK 222


>gi|49480125|ref|YP_034775.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase
           activating enzyme) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49331681|gb|AAT62327.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase
           activating enzyme) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 243

 Score = 39.5 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 50/243 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N    EI       +                +P +      I
Sbjct: 28  GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234
            + G GEPL   D +   + +      +       T+ +SG        F   +  + E 
Sbjct: 74  TVSG-GEPLLQLDFL---IELFKKCKEIGI---HTTIDSSGGCYSEEPEFQNKLDILMEY 126

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             ++L    H  S   R +    N        I     Y    N   I   +V++ G+ D
Sbjct: 127 TDLVLLDLKHIDSKKHRKLTGKSN------EHILQFARYLSDKNK-PIWVRHVLVPGVTD 179

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340
           +  D   L   ++ +    K+ ++P++          G +Y         +K++      
Sbjct: 180 NEEDLQKLSSFIQSLSNVQKVEVLPYHKLGVYKWEALGHKYPLANVEPPTEKNVEQARHI 239

Query: 341 IKR 343
           ++ 
Sbjct: 240 LQA 242


>gi|329296403|ref|ZP_08253739.1| putative lysine aminomutase [Plautia stali symbiont]
          Length = 342

 Score = 39.5 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 57/224 (25%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY------TGTQKLVRNLTAEEI 147
                    +  +    K+R  L V    GC++ C +C+         Q   RN  A   
Sbjct: 92  DPLDEQSSVVPGLLHKYKNRAMLLVKG--GCAVNCRYCFRRHFPYQDNQGNKRNWQAA-- 147

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSI 203
                                 +   +   ++  I+  G G+PL   D     +  +L  
Sbjct: 148 ----------------------IDYIAAHPELDEIIFSG-GDPLMAKDQELAWLIGALEN 184

Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263
                 L     R+ +               I   +   L  +  D R  ++ ++     
Sbjct: 185 IPHLKRLRI-HSRLPV--------------VIPARITEGLCQLLADTRLQVLLVSHINHA 229

Query: 264 EMLIDACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKI 305
           + + +A R          +T   + V+L+G+ND   DA  L ++
Sbjct: 230 QEIDEALRERMQRLKRAGVTLLNQSVLLRGVND---DAQTLAQL 270


>gi|2500056|sp|Q46267|PFLA_CLOPA RecName: Full=Pyruvate formate-lyase-activating enzyme;
           Short=PFL-activating enzyme; AltName:
           Full=Formate-C-acetyltransferase-activating enzyme
 gi|1072362|emb|CAA63749.1| pyruvate-formate-lyase-activating enzyme [Clostridium pasteurianum]
          Length = 238

 Score = 39.5 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 87/239 (36%), Gaps = 40/239 (16%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLL 153
           +G    IE++ + +       V  Q GC L CS+C+   T      + LTAEE+L ++L 
Sbjct: 3   MGRIHSIESMGLVDGPGIRTVVFFQ-GCGLRCSYCHNPDTWNMAGGKELTAEELLKKLLR 61

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
            +                 P   R    +   G GE L   + +   L       G+   
Sbjct: 62  FK-----------------PYFDRSGGGVTFSG-GEVLLQPEFLIDILK-LCKEQGI--- 99

Query: 214 KRRITLSTSGFVPNIAR--VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
                + T+G+        +     V+L   +  V +D    +    ++   +  + A  
Sbjct: 100 --HTAIDTAGYGYGNYEEILKHTDLVLL--DIKHVDDDGYKCITGKGKR-GFDDFLKAVE 154

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328
           +        ++   +V++  + DS  +   L  I+K I    K+ L+P++     +Y  
Sbjct: 155 NI-----GVKVWIRHVIVPTLTDSKENIRKLANIIKNIRNVEKVELLPYHTLGINKYEK 208


>gi|313203906|ref|YP_004042563.1| nitrogenase cofactor biosynthesis protein nifb [Paludibacter
           propionicigenes WB4]
 gi|312443222|gb|ADQ79578.1| nitrogenase cofactor biosynthesis protein NifB [Paludibacter
           propionicigenes WB4]
          Length = 424

 Score = 39.5 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 39/228 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C++C                   V  +R  +             +  +  +I N+ 
Sbjct: 33  CNIQCNYCNRK-------------YDCVNESRPGVTSSVLAPFQAVEYLRDLDGRIENLA 79

Query: 184 MMGM---GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVM 238
           ++G+   G+P  N +   +++   S      F ++   LST+G    P I  + E     
Sbjct: 80  VIGIAGPGDPFANPEETLETMRRVSKE----FPEKIFCLSTNGLNLEPYIDEIAELNVSH 135

Query: 239 LAISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEY 286
           + I+++A+   +   +    R               LE  +         S   +I    
Sbjct: 136 VTITINAIDPKITAKIYKWVRFNKKVYRGEEGAAILLERQLACIAKLKARSITIKINS-- 193

Query: 287 VMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYLCSDQKD 333
           +++ GIN        + K    + A  IN IP  P     +   ++ D
Sbjct: 194 IIIPGIN--EDHIPEVAKKCAELGADVINCIPLIPTAETPFEAVEKPD 239


>gi|217978150|ref|YP_002362297.1| Radical SAM domain protein [Methylocella silvestris BL2]
 gi|217503526|gb|ACK50935.1| Radical SAM domain protein [Methylocella silvestris BL2]
          Length = 370

 Score = 39.5 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 24/144 (16%)

Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           R+ E     L + L AV++++R  ++P   + P+E    A R    +    +++  Y++ 
Sbjct: 218 RLREAGADALGMHLEAVTDEVRARIMPGKAQVPVERYFSAFRAAVPVFGRGQVS-TYIL- 275

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSE------- 339
            G+ D+  D L++ + L  I     ++PF P  G                F +       
Sbjct: 276 AGLGDARDDILDICRRLIDIGVYPFVVPFTPISGTPLENHPTPSP----AFMDDLLAPLA 331

Query: 340 -CIKRSGYSSPIRTPRGLDILAAC 362
             +   G +S        D+ A C
Sbjct: 332 LMLSEGGLAS-------SDVKAGC 348


>gi|25027857|ref|NP_737911.1| molybdenum cofactor biosynthesis protein A [Corynebacterium
           efficiens YS-314]
 gi|259506248|ref|ZP_05749150.1| molybdopterin cofactor biosynthesis protein A [Corynebacterium
           efficiens YS-314]
 gi|23493140|dbj|BAC18111.1| putative molybdopterin biosynthesis protein MoaA2 [Corynebacterium
           efficiens YS-314]
 gi|259166152|gb|EEW50706.1| molybdopterin cofactor biosynthesis protein A [Corynebacterium
           efficiens YS-314]
          Length = 381

 Score = 39.5 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 82/238 (34%), Gaps = 30/238 (12%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C++C                    L            E I  + I      I  I 
Sbjct: 65  CNLRCTYCMPAEG---------------LEWMPTEQTLSDAETIRLIRIAVEKLGIRQIR 109

Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
             G GEPL   N +++  + +      G +  +  +T +  G    I  + E     + I
Sbjct: 110 FTG-GEPLLRKNLEDIISATTALRTDEGETV-RTALTTNGLGLDKRIVGLREAGLHRVNI 167

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SL    +  R   + + R+  L  ++ +       S  + +    V++ G+N    D + 
Sbjct: 168 SL-DTIDAQR--YLSLTRRDRLSGVLSSIEAAVA-SGMQPVKVNAVVMPGVN--EVDIVP 221

Query: 302 LIKILKGIPAKINLI---PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
           L      + A++  I   P    P  ++   D        E ++++   SP R PRG 
Sbjct: 222 LASYCLELGAQLRFIEQMPL--GPREQWRRGDMVTAAQIFERLEQAFILSPAREPRGS 277


>gi|268611539|ref|ZP_06145266.1| Radical SAM-superfamily protein [Ruminococcus flavefaciens FD-1]
          Length = 203

 Score = 39.5 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 31/214 (14%)

Query: 105 TVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164
            + I  +    L ++    C   C+FC       +RN          L         P  
Sbjct: 4   AMTISYEVGNNLYLNFTNKCPCACTFC-------IRNHADGAYGSDPLWLEHE----PTM 52

Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
           ++I+  +      K   IV  G GEP    D V ++ +   +        +++ ++T+G 
Sbjct: 53  DEIKADLDKRDLTKYDEIVFCGYGEPTERLDAVIEAAAFLREK-----GCKKLRINTNGL 107

Query: 225 VPNI--ARVGEEIGVML---AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG---L 276
              I    + +E+   +   +ISL+A +    + +     ++P      A R++      
Sbjct: 108 GDLIHGRSIADELCTAMDVVSISLNAPTEK--DYMDVTRPRFP--DAFSALRNFTRDCVK 163

Query: 277 SNARRI---TFEYVMLKGINDSPRDALNLIKILK 307
           +    I     + +  + I  S + A  L  +L+
Sbjct: 164 TGKAEIIMSVVDVIPQEQIEASRKVAEELGAVLR 197


>gi|296109240|ref|YP_003616189.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
 gi|295434054|gb|ADG13225.1| Radical SAM domain protein [Methanocaldococcus infernus ME]
          Length = 429

 Score = 39.5 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 28/195 (14%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           + E+ R  + V    GC+L C FC     +  +                   D       
Sbjct: 100 LIERGRNIIQVRGHCGCNLNCIFCSVDEGEYSK-----------TRKNDYYVDLDHLIKE 148

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
              +    GR      + G GEP   +  +   +   S       +K  I    S  VP 
Sbjct: 149 YKKLAEYKGRVKLEAHLDGQGEPSL-YYPLVDLVQELSS-----INKDGIVTMQSNGVPL 202

Query: 228 IARVGEEIGVMLAISLHAVS------NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
             ++ +E+       LH ++      ++    ++   + Y +E ++D   +    ++   
Sbjct: 203 TYKLIDELE---EAGLHRINLSINALDEKMAKMLAGRKDYKIEKILDIAEYI--KNSKIH 257

Query: 282 ITFEYVMLKGINDSP 296
           +    ++L  IND  
Sbjct: 258 LLVAPLLLPNINDEE 272


>gi|167768087|ref|ZP_02440140.1| hypothetical protein CLOSS21_02632 [Clostridium sp. SS2/1]
 gi|167710416|gb|EDS20995.1| hypothetical protein CLOSS21_02632 [Clostridium sp. SS2/1]
 gi|291561083|emb|CBL39883.1| Pyruvate-formate lyase-activating enzyme [butyrate-producing
           bacterium SSC/2]
          Length = 300

 Score = 39.5 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 34/157 (21%)

Query: 214 KRRITLSTSGFVPN--IARVGEEIGVMLAISLHAVSND------LRNILVPINRKYPLEM 265
           K    + T+G++       +     ++L    H  S+       + N L+  N  + +  
Sbjct: 156 KIHTAIETTGYIKKEIFRELAPMFDLLLFDVKHYDSDKHYEGTHVHNELIIENLAWAISQ 215

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGC 324
            I+     P             ++   NDS  DA  +  +L  + A K+ L+PF+ +   
Sbjct: 216 GIEVLPRIP-------------VIPDFNDSLDDAKGIAALLNQVGAKKVQLLPFHQFGEN 262

Query: 325 EY------------LCSDQKDIVTFSECIKRSGYSSP 349
           +Y                 +D+  +      +G    
Sbjct: 263 KYHLLGKTYSYENVKALHPEDLTDYQRIFLDAGIDCF 299


>gi|167754788|ref|ZP_02426915.1| hypothetical protein CLORAM_00292 [Clostridium ramosum DSM 1402]
 gi|237735925|ref|ZP_04566406.1| pyruvate formate-lyase activating enzyme [Mollicutes bacterium D7]
 gi|167705620|gb|EDS20199.1| hypothetical protein CLORAM_00292 [Clostridium ramosum DSM 1402]
 gi|229381670|gb|EEO31761.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. D7]
          Length = 255

 Score = 39.5 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 76/242 (31%), Gaps = 48/242 (19%)

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC L C FC+                           +    E I   +          
Sbjct: 36  HGCPLRCKFCHNPD---------------TWANAKSTMEMTPQEAIAKALKYKSYWGNDG 80

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIG 236
            + +  GEPL   D + +     +   G++       + TSG       P  ++  E + 
Sbjct: 81  GITVSGGEPLLQIDFLIELFK-LAKKEGIN-----TCIDTSGGNFTREEPFFSKFNELMK 134

Query: 237 VM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               L + L  + +     L         + ++D  ++   ++    +   +V++ GI+D
Sbjct: 135 YTDLLLVDLKHIDSTQHQELTGKGN----DNILDMAKYLSTINK--PVWIRHVLVPGISD 188

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEYL-----CSDQKDIVTFSEC 340
                  L K +  +    K+ ++P++          G  Y        +Q+ I   ++ 
Sbjct: 189 KDEYLTELDKFISTLNNVKKVEVLPYHTLGVFKWEELGIPYQLDGINPPNQERIDNANKL 248

Query: 341 IK 342
           + 
Sbjct: 249 LH 250


>gi|158521649|ref|YP_001529519.1| radical SAM domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158510475|gb|ABW67442.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3]
          Length = 313

 Score = 39.5 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 26/218 (11%)

Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR-----KISNIVMMGMGEPLCNFD- 195
            T + I  Q+  + S         D + ++     R     +   I + G GEP  N D 
Sbjct: 34  CTYDCIYCQLGKSSSKTVKRLPYRDADTVLAQLFERLEKIDRPDCITIAGSGEPTLNSDI 93

Query: 196 -NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--MLAISLHAVSNDLRN 252
             V   +   +D          + + T+G + +   V  ++    M+  SL A + ++  
Sbjct: 94  GAVIAGIKQKTD--------IPVVVLTNGSLLSDPEVQSDLLAADMVIPSLDAWNPEMFA 145

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PA 311
            +    R      + +    +   +   ++  E  ++ GIN S  DA     ++  I PA
Sbjct: 146 SINRPYRTVDFTTMTEGLVSF-SKAYGGQLWLEIFIMDGINASVDDARAFKPLVDRINPA 204

Query: 312 KINLIPFNPW---PGCEY-LCSDQKDIVTFSECIKRSG 345
            +     N     P   +   +    I  F   + R+ 
Sbjct: 205 VV---YVNTAVRPPEESFVKQASPAMIENFYRTLGRAH 239


>gi|268325623|emb|CBH39211.1| conserved hypothetical protein, nifB related [uncultured archaeon]
          Length = 304

 Score = 39.5 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 59/179 (32%), Gaps = 25/179 (13%)

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239
           + + G GEPL N +   ++  +               LST+G      I  + E     +
Sbjct: 106 VAVAGPGEPLFN-EETFETFRLVKAEY----PHMMRCLSTNGLLLPERIDDLEELDIGTV 160

Query: 240 AISLHAVSNDLRNILV----PINRKYPLEMLIDACRH------YPGLSNARRITFEYVML 289
            ++L+ V   +   +        ++Y  E   +             +     I    V++
Sbjct: 161 TVTLNTVDPAIGKDIYSVVNYHGKRYKGEEGAEILLKNQLEGIREAVKRKILIKVNTVLI 220

Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTFSECIKRS 344
             +ND     + + K +  +   + N+IP    P  ++       Q++     +  +  
Sbjct: 221 PTVND--EHIVEVAKKIAEMGVYMQNIIPL--IPQYKFAHITPPTQQEKEAIQDKCREY 275


>gi|331004679|ref|ZP_08328140.1| hypothetical protein HMPREF0491_03002 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330409504|gb|EGG88946.1| hypothetical protein HMPREF0491_03002 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 449

 Score = 39.5 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 86/242 (35%), Gaps = 32/242 (13%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
           EK+   L +     C++ C +CY                     ++  + D    + +  
Sbjct: 80  EKNLNRLVIHLTNDCNMRCGYCYANGG--------------AYYSQRSIMDKAVLDKLVD 125

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLST---SG 223
                    I+NI   G GEPL N++ ++ +  I S        + +   +T  T     
Sbjct: 126 RFFGEF-HIINNIQFFG-GEPLMNYELMEYACKIVSSIAKKRNYNITFGLVTNGTLIDCK 183

Query: 224 FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
           F+  + +    I V ++   +   ND+   ++          LI     +      +  T
Sbjct: 184 FIDLVKKF--NIQVTISYDGNPAVNDM-MRIMEDCSGSS--ELILKNAKWLKAETGQPNT 238

Query: 284 FEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
            E    +   D+    L+++K +  +     ++L+P      C+Y     +D+  F++ +
Sbjct: 239 IEVTYNQYHVDAKVSILDIVKHIHDVIPDTFVHLVPAGGTKDCDY---AIEDLSMFADSV 295

Query: 342 KR 343
           + 
Sbjct: 296 RE 297


>gi|153955752|ref|YP_001396517.1| hypothetical protein CKL_3138 [Clostridium kluyveri DSM 555]
 gi|219856120|ref|YP_002473242.1| hypothetical protein CKR_2777 [Clostridium kluyveri NBRC 12016]
 gi|146348610|gb|EDK35146.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219569844|dbj|BAH07828.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 456

 Score = 39.5 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 21/193 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+    +                AR+L+    G + ++ ++  S
Sbjct: 95  ALCLNVAHDCNLKCKYCFADEGEYKG-------------ARALMSAHIGKKAVDFVIEKS 141

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             RK   I + G GEPL  F  +K+ +  A +    +  K R T++T+  + N   +   
Sbjct: 142 GPRKNIEIDLFG-GEPLMAFQCIKEIVEYAREQEVKNNKKIRFTMTTNAVMLNDEIMEYI 200

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVML 289
                 ++L+I      ND   +       +    ++   +H   + +  +         
Sbjct: 201 DKNMGNIVLSIDGRKEINDKIRVRKDGGGTFNT--ILPKIKHMIEIRDKSKQYYVRGTFT 258

Query: 290 KGINDSPRDALNL 302
           +   D   D   L
Sbjct: 259 RKNTDFFEDIKFL 271


>gi|113867935|ref|YP_726424.1| biotin synthase-related enzyme [Ralstonia eutropha H16]
 gi|113526711|emb|CAJ93056.1| biotin synthase-related enzyme [Ralstonia eutropha H16]
          Length = 367

 Score = 39.5 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 28/154 (18%)

Query: 225 VPNIARVGEEIGV----MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
            P+  R  E +       L + L  V+  LR  ++P     P    ++A +    +    
Sbjct: 203 PPDDDRWFERMKAAGIDTLGMHLEVVTPALRERIMPGKAGVPPSRYMEAFKAAVAVFGRA 262

Query: 281 RITFEYVMLKGINDSPRDA----LNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKD 333
           +++  Y++  G+ D+          LI++  G+   +  +PF P  G             
Sbjct: 263 QVS-TYIL-AGLGDTAEAILSISRELIEL--GVYPFV--VPFVPISGTPLEDHPAPSPAF 316

Query: 334 IVTFSE----CIKRSGYSSPIRTPRGLDILAACG 363
           + +  +     +  +G    +R+    DI A CG
Sbjct: 317 MQSILQPLGAMLSAAG----MRSS---DIKAGCG 343


>gi|15669156|ref|NP_247961.1| hypothetical protein MJ_0966 [Methanocaldococcus jannaschii DSM
           2661]
 gi|41018404|sp|Q58376|Y966_METJA RecName: Full=Uncharacterized protein MJ0966
 gi|1591630|gb|AAB98968.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 444

 Score = 39.5 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 85/240 (35%), Gaps = 48/240 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC   C FC                     LAR++       +  + M +   G K++ +
Sbjct: 177 GCPRRCRFC---------------------LARAIYYPPRFRKLDDLMYLAEEGVKVNKV 215

Query: 183 VMMGMGEP-LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
             + +  P + ++  + +  +   D MG+  S   +   T     ++ R+ +     L I
Sbjct: 216 NKVALIAPSVGDYKYIVELCNFL-DDMGVHISPSSLRADT--LNDDLMRILK--PKTLTI 270

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           +  A S  LR  +    R+  +   ID  + +       ++   Y M+    ++  D   
Sbjct: 271 APEAGSERLREFIKKDIRERDIANAIDLAKKF----GVEKVKL-YFMVGIPTETDEDIEE 325

Query: 302 LIKILKGIP-------AKIN-LIPFNPWPGCEYLC-----SDQKDIVTFSECIKRSGYSS 348
           LI + K +          +N +IP    P  ++       S +K I    + +K+ G   
Sbjct: 326 LINLTKKVKKEIRKVEISVNPMIP---KPHTDFEVEEFDLSSKKKIKYIEKALKKEGIRV 382


>gi|289167177|ref|YP_003445444.1| pyruvate-formate lyase activating enzyme [Streptococcus mitis B6]
 gi|288906742|emb|CBJ21576.1| pyruvate-formate lyase activating enzyme [Streptococcus mitis B6]
          Length = 264

 Score = 39.5 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 69/213 (32%), Gaps = 33/213 (15%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N     +      +             E +           I
Sbjct: 37  GCHMRCQYCH--------NPDTWAM-----ESNKSRERTVDDVLTEALRYRGFWGNKGGI 83

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237
            + G GE L   D +  +L   +   G+       TL T           + +  + + V
Sbjct: 84  TVSG-GEALLQIDFLI-ALFTKAKEHGI-----HCTLDTCALPFRNKPRYLEKFDKLMAV 136

Query: 238 M-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             L +      ++ ++ +V           I AC  Y      + +   +V++ G+ D  
Sbjct: 137 TDLVLLDIKEIDEEQHKIVTSQTN----KNILACAQYLS-DIGKPVWIRHVLVPGLTDRD 191

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
            D + L K +K +    K  ++P++     ++ 
Sbjct: 192 DDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224


>gi|150390308|ref|YP_001320357.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus
           metalliredigens QYMF]
 gi|229890435|sp|A6TR80|MIAB_ALKMQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|149950170|gb|ABR48698.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus
           metalliredigens QYMF]
          Length = 476

 Score = 39.5 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 23/194 (11%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT-GTQKLVRNLTAEEILLQVL 152
                    +E + +  K      ++   GC+  C++C    T+   R+   +EI+ +V 
Sbjct: 164 DVWDKEGDIVEGLPVTRKYGLKAFINIMFGCNNFCTYCIVPHTRGRERSREVQEIIDEV- 222

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
               L  +      + G  + S G+ +      G      N       L + +   G+  
Sbjct: 223 --EELAKNGTKEITLLGQNVNSYGKTLEEETDFG------NL------LKVLNKIEGI-- 266

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVP-INRKYPLEMLIDA 269
              RI   TS        +   + V   +   LH       N ++  +NRKY  E  ++ 
Sbjct: 267 --ERIRFMTSHPKDLSDSLISAMTVCTKVCAHLHLPFQAGSNDILKAMNRKYTKEAYLEL 324

Query: 270 CRHYPGLSNARRIT 283
                       +T
Sbjct: 325 VEKVRSKVPNVALT 338


>gi|281358833|ref|ZP_06245305.1| pyruvate formate-lyase activating enzyme [Victivallis vadensis ATCC
           BAA-548]
 gi|281314701|gb|EFA98742.1| pyruvate formate-lyase activating enzyme [Victivallis vadensis ATCC
           BAA-548]
          Length = 237

 Score = 39.5 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 70/213 (32%), Gaps = 40/213 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N    E+            +    E +  +       +   +
Sbjct: 30  GCPLRCRYCH--------NPDTWELGG--------GMEISSAEVVGKIESCRNFIRSGGV 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV----- 237
            + G GEPL   +  +  L       G         L T+G VP    +     V     
Sbjct: 74  TLSG-GEPLMQPEFARDILER-CARAGF-----HTALDTAGSVP----LERSRPVIDRAD 122

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +L + + A++  L   L   + +  L   +D C        AR +   +V++ G      
Sbjct: 123 LLLLDIKALNPALCRELTGRDNRNTLA-TLDYCEE-----TARPVWIRHVLVPGFTLLRE 176

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328
               L   LK      +I+L+P++     ++  
Sbjct: 177 RLEELAAFLKPYRCIRRIDLLPYHKLGAYKWEQ 209


>gi|172056644|ref|YP_001813104.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sibiricum
           255-15]
 gi|171989165|gb|ACB60087.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sibiricum
           255-15]
          Length = 242

 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 70/212 (33%), Gaps = 37/212 (17%)

Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157
             +E+    +       V +Q GC L C +C+   T      R+++A EI+ +    RS 
Sbjct: 9   HSVESCGTVDGPGIRFIVFTQ-GCPLRCQYCHNADTWEFGCGRSVSATEIIEEAESYRSF 67

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
                G                  I   G GEPL   + ++ +L  A             
Sbjct: 68  FEATGGG-----------------ITFSG-GEPLAQPEFLEAALREAKQK------GMHT 103

Query: 218 TLSTSG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275
            + T+G     NI R+ +   ++L + +  + +    IL   +    L            
Sbjct: 104 VIDTAGSVVPKNIDRILDYTDLVL-LDIKHIDDATCRILTGRSNANTLAFAKRLAER--- 159

Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILK 307
                 +   +V++ G+  +        + ++
Sbjct: 160 ---NIPVWIRHVLVPGLTMTETFLRQTGEFIR 188


>gi|296877199|ref|ZP_06901239.1| pyruvate formate-lyase activating enzyme [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431719|gb|EFH17526.1| pyruvate formate-lyase activating enzyme [Streptococcus
           parasanguinis ATCC 15912]
          Length = 258

 Score = 39.5 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 84/249 (33%), Gaps = 35/249 (14%)

Query: 85  TRKWLLRFPARCIGGPVEIET-VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143
           TR  +       I     I T V++              GC L C +C        R + 
Sbjct: 4   TRGIIFNIQHFSIHDGPGIRTTVFLK-------------GCPLRCPWCSNPES--QR-MN 47

Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNIVMMGMGEPLCNFDNVKKSL 201
            E +L  V  A    G     ++I   V+  +    +    + +  GE    F+   K+L
Sbjct: 48  PEPMLDAVTKAPGTTGQEKTVDEIIDEVMKDIDFYEESGGGMTLSGGEIFAQFE-FAKAL 106

Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--MLAISLHAVSNDLRNILVPINR 259
             A+   GL        + T+ FV +  +  + I     +   L   ++      +   +
Sbjct: 107 LKAAKERGL-----HTAIETTAFVEH-EKFIDLIQYVDFIYTDLKHYNS------LKHKK 154

Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPF 318
           K  +   +     +      ++I     ++   NDS  DA     +   +   ++ L+PF
Sbjct: 155 KVGVHNSLIIENIHYAFKEKKKIVLRIPVIPQFNDSLADAEEFSTLFNSLDIDQVQLLPF 214

Query: 319 NPWPGCEYL 327
           + +   +Y 
Sbjct: 215 HQFGENKYK 223


>gi|150400105|ref|YP_001323872.1| radical SAM domain-containing protein [Methanococcus vannielii SB]
 gi|150012808|gb|ABR55260.1| Radical SAM domain protein [Methanococcus vannielii SB]
          Length = 458

 Score = 39.5 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 73/218 (33%), Gaps = 27/218 (12%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           + ++    + +    GC++ C FC         N +        +    L+ ++    D 
Sbjct: 124 LIDRGTNVIQIRGLSGCNINCPFCSVDEG----NHSKSRKNDYYVDMDYLVSEYKKIADF 179

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
           +G              + G GEP   +  + + +   ++  G       I  +       
Sbjct: 180 KGNTKLEAH-------LDGQGEPSL-YYPLLELVQELNEINGPKKGIVSIQSNGVNLNEK 231

Query: 228 -IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
            I  + +     + +S++A  ++  +  +   + Y +  +++    Y   S    +    
Sbjct: 232 LIDDLADSGLHRINMSINA-IDEKLSKGLSGKKDYDINKILE-ISEYIKNS-KIHLLIAP 288

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINL---IPFNPW 321
           ++L   ND+        +  K +   +NL   IP N  
Sbjct: 289 ILLPNYNDT--------EFKKVLDYAVNLQQKIPQNTI 318


>gi|123969432|ref|YP_001010290.1| putative organic radical activating protein [Prochlorococcus
           marinus str. AS9601]
 gi|123199542|gb|ABM71183.1| possible organic radical activating enzyme [Prochlorococcus marinus
           str. AS9601]
          Length = 225

 Score = 39.5 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 27/107 (25%)

Query: 122 VGCSLTCSFCYTG---TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
            GC + CS+C T     +K   +++ E+I+ ++ +AR     F                 
Sbjct: 33  AGCKVGCSWCDTKNSWDEKKHPSISIEKIIDRIKIARKKGASF----------------- 75

Query: 179 ISNIVMMGMGEPL-CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
               V+ G GEPL  N DN  K++   +  MG      +I + TSG 
Sbjct: 76  ---CVITG-GEPLQHNLDNFCKAIKKMT--MGEEQKPIKIHIETSGV 116


>gi|242277946|ref|YP_002990075.1| glycyl-radical enzyme activating protein family [Desulfovibrio
           salexigens DSM 2638]
 gi|242120840|gb|ACS78536.1| glycyl-radical enzyme activating protein family [Desulfovibrio
           salexigens DSM 2638]
          Length = 309

 Score = 39.5 bits (91), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 30/130 (23%)

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            +    H     +RN ++  N  + L+             N   +     MLKG+ND   
Sbjct: 190 HMNSERHREITGVRNEMILQNLIWLLD-------------NRYNVKIRMPMLKGVNDGEE 236

Query: 298 DALNLIKILKG----IPAK-INLIPF-----NPWPGCEYLCS-------DQKDIVTFSEC 340
           + L L+++LK        K ++L+P+     N +    +             D+    + 
Sbjct: 237 EILQLVELLKPYKDLKNFKGVDLLPYHKMGVNKYTQLGWEYPVEGDPKLSNADLERIEQA 296

Query: 341 IKRSGYSSPI 350
           I +  +   +
Sbjct: 297 ITKYNFPVSV 306


>gi|20094494|ref|NP_614341.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
 gi|19887599|gb|AAM02271.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19]
          Length = 322

 Score = 39.5 bits (91), Expect = 0.98,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 71/234 (30%), Gaps = 39/234 (16%)

Query: 86  RKWLLRFPARCIGGPVEIET----VYIPEKSR---GTLCVSSQVG-CSLTCSFCYTGTQK 137
            K  ++  A      +  E     VY P  SR    +L +    G C+  C +C      
Sbjct: 67  VKLAVKLGAEVELEGLSSEDRRPLVYGPVPSRRLGTSLGIDLPRGMCTHDCEYCSV---G 123

Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC--NFD 195
           + R ++  E                     E +           +   G+GEP    N  
Sbjct: 124 VSRRVSPHE-----------RFTVDPVAVREELSETLRRCDPDAVTFAGVGEPTLCANLR 172

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255
            + + +    +          + L+ S +V       + + V +A SL     DL   + 
Sbjct: 173 EIAEEIRPLVE----GVGAEVVLLTNSTWVS---ECADVVDVAVA-SLDCAREDLYRTIN 224

Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVML---KGINDSPRDALNLIKIL 306
             +    LE L++         +   +  E ++    K  N  P     L  +L
Sbjct: 225 RPHPDMSLEHLVEEL----SQCDPGDVVVEVLLCRVGKITNADPDHLRELADLL 274


>gi|331268523|ref|YP_004395015.1| glycerol dehydratase activator [Clostridium botulinum BKT015925]
 gi|329125073|gb|AEB75018.1| glycerol dehydratase activator [Clostridium botulinum BKT015925]
          Length = 313

 Score = 39.5 bits (91), Expect = 0.99,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 14/83 (16%)

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------ 327
           I     +++G N   +   ++ +  K +    +I+L+P++ +   +Y             
Sbjct: 229 IIIRVPVIEGFNSDEKSIRDIAEFAKTLKKVKRIDLLPYHSYGENKYQTIGRNYFLKNLK 288

Query: 328 CSDQKDIVTFSECIKRSGYSSPI 350
               + +  F + ++  G    I
Sbjct: 289 PPSNEKMNCFRKIVQGRGLFCSI 311


>gi|167771421|ref|ZP_02443474.1| hypothetical protein ANACOL_02787 [Anaerotruncus colihominis DSM
           17241]
 gi|167666061|gb|EDS10191.1| hypothetical protein ANACOL_02787 [Anaerotruncus colihominis DSM
           17241]
          Length = 457

 Score = 39.5 bits (91), Expect = 0.99,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 73/214 (34%), Gaps = 25/214 (11%)

Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVLLARSLL 158
              IE V +         +    GC   C++C     +   R+    ++L +   AR+L+
Sbjct: 150 GEIIEGVPLRRSGSIKANLPVMYGCDNFCTYCIVPYVRGRERSRNPGDVLNE---ARALV 206

Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
           G       + G  + S G         G+ EP  NF  + + ++   D   + F      
Sbjct: 207 GQGYRELLLLGQNVNSYG--------KGLSEP-INFAALLRRVNEIEDDFWIRFMTSHPK 257

Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV-PINRKYPLEMLIDACRHYPGLS 277
             T   +  IA   +     +   +H       + ++  +NR Y +   ++   +     
Sbjct: 258 DCTHELIDTIAACNK-----VCRHIHLPVQSGSDRILAAMNRHYTVAHYLELIDYARARI 312

Query: 278 NARRITFEYVMLKGI----NDSPRDALNLIKILK 307
               +TF   ++ G            L LIK ++
Sbjct: 313 PG--VTFSSDIIVGFPGETRADFEQTLELIKRVR 344


>gi|313673576|ref|YP_004051687.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940332|gb|ADR19524.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 230

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 57/152 (37%), Gaps = 35/152 (23%)

Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           EIETV +   +    C    +GC+L C +CY  +  L                       
Sbjct: 8   EIETVSLTNFTGKVACTVFTIGCNLRCRYCYNKSLVLK---------------------T 46

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
               DIE +        + NI + G GEPL ++ ++K  L    D      S   I L T
Sbjct: 47  EKPVDIEKIRDKIKTLPLKNIAITG-GEPLLHY-SLKDFLYFLKD------SGFEIKLDT 98

Query: 222 SGFVPNIARVGEEIGVML----AISLHAVSND 249
           +G  P   R+   +   L    A+ + A ++D
Sbjct: 99  NGTFP--ERLQNILDKKLIDYVAVDIKAFTDD 128


>gi|307545567|ref|YP_003898046.1| molybdenum cofactor biosynthesis protein A [Halomonas elongata DSM
           2581]
 gi|307217591|emb|CBV42861.1| molybdenum cofactor biosynthesis protein A [Halomonas elongata DSM
           2581]
          Length = 330

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 31/195 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C +C +     +          QVL    L        ++    I   G       
Sbjct: 24  CDFRCVYCMSEEMTFLPR-------EQVLTLEELSLVARAFTELGVEKIRLTG------- 69

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMG--LSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
               GEPL     V++ +      +G         +T + +G     + + E     L I
Sbjct: 70  ----GEPL-----VRRDIDRLVADIGSLPGLKDFAMTTNGAGLGKYASLLREGGLQRLNI 120

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           S+ ++  +    L      + +   + A R     +   RI    V+LKG ND   + + 
Sbjct: 121 SIDSLDPERFRRLTRTGNLHKVIDGMRAARE----AGFERIKLNAVILKGRND--DEVIP 174

Query: 302 LIKILKGIPAKINLI 316
           L+   +     I+ I
Sbjct: 175 LVDFARREGVDISFI 189


>gi|260681933|ref|YP_003213218.1| 4-hydroxyphenylacetate decarboxylase activating subunit
           [Clostridium difficile CD196]
 gi|260685531|ref|YP_003216664.1| 4-hydroxyphenylacetate decarboxylase activating subunit
           [Clostridium difficile R20291]
 gi|260208096|emb|CBA60347.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile CD196]
 gi|260211547|emb|CBE01729.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile R20291]
          Length = 326

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 23/187 (12%)

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           R    +   G GEPL   + +     +      ++     I  S         ++ ++I 
Sbjct: 144 RSNGGVTFSG-GEPLLQHEFL---HEVLLKCHEVNI-HTAIETSACVSNEVFNKIFKDID 198

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
                  H      R         Y  +++++   +        R+     ++ G NDS 
Sbjct: 199 FAFIDIKHM----DREKHKEQTGVYN-DLILENISNLANSDWNGRLVLRVPVISGFNDSA 253

Query: 297 RDALNLIKIL-KGIPAKINLIPFNPWPGC-------EYLCSDQKDI-----VTFSECIKR 343
            +  ++I  + K    +INL+PF+            EY  SD+ DI         +    
Sbjct: 254 ENISDIISFMHKNNLIEINLLPFHRLGESKWIQLGKEYEYSDKGDIDEEHLEELQDIFLD 313

Query: 344 SGYSSPI 350
           +G +  +
Sbjct: 314 NGIACYV 320


>gi|254973814|ref|ZP_05270286.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile QCD-66c26]
 gi|255091201|ref|ZP_05320679.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile CIP 107932]
 gi|255312858|ref|ZP_05354441.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile QCD-76w55]
 gi|255515617|ref|ZP_05383293.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile QCD-97b34]
 gi|255648711|ref|ZP_05395613.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile QCD-37x79]
 gi|306518831|ref|ZP_07405178.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile QCD-32g58]
 gi|317411750|sp|C9YHW3|HPDA_CLODR RecName: Full=4-hydroxyphenylacetate decarboxylase activating
           enzyme; Short=Hpd-AE
 gi|317411752|sp|C9XIS7|HPDA_CLODC RecName: Full=4-hydroxyphenylacetate decarboxylase activating
           enzyme; Short=Hpd-AE
          Length = 316

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 23/187 (12%)

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           R    +   G GEPL   + +     +      ++     I  S         ++ ++I 
Sbjct: 134 RSNGGVTFSG-GEPLLQHEFL---HEVLLKCHEVNI-HTAIETSACVSNEVFNKIFKDID 188

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
                  H      R         Y  +++++   +        R+     ++ G NDS 
Sbjct: 189 FAFIDIKHM----DREKHKEQTGVYN-DLILENISNLANSDWNGRLVLRVPVISGFNDSA 243

Query: 297 RDALNLIKIL-KGIPAKINLIPFNPWPGC-------EYLCSDQKDI-----VTFSECIKR 343
            +  ++I  + K    +INL+PF+            EY  SD+ DI         +    
Sbjct: 244 ENISDIISFMHKNNLIEINLLPFHRLGESKWIQLGKEYEYSDKGDIDEEHLEELQDIFLD 303

Query: 344 SGYSSPI 350
           +G +  +
Sbjct: 304 NGIACYV 310


>gi|145341975|ref|XP_001416074.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576298|gb|ABO94366.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 324

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 66/274 (24%)

Query: 111 KSRGTLCVSSQVGCSLTCSFCY-----------TGTQKLVRNLTAEEILLQVLLARSLLG 159
              G  C+    GC   C+FC            T      R ++  +I+  +   R    
Sbjct: 79  DGHGIRCIVFLQGCEKRCAFCCNVDSTHAALAKTPNPG--RTMSVNDIVEILKRNRKYYA 136

Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
              G                     +  GE L       ++++I +  +GL      I  
Sbjct: 137 SSEGGGLT-----------------LSGGECLL-QPAFVEAVAIKTHEIGL---TVAIDT 175

Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           + SG      RV   + V+L     +     + I     R+Y      +  R +    N 
Sbjct: 176 AASGDAETWNRVLPHVDVVLLCVKSSSLEKYKAITGTTEREY------ETMRAFLKELNR 229

Query: 280 RRI--TFEYVMLKG---------INDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEY 326
           RR+     +V++            ND       L ++ K       I L+P++ +   ++
Sbjct: 230 RRVKTWLRFVLMSDPDSRFVDFRTNDENE-LRGLAELAKTHECVEGIELLPYHRFGEFKF 288

Query: 327 ------------LCSDQKDIVTFSECIKRSGYSS 348
                          D ++I      ++  G + 
Sbjct: 289 SELGLEYKLEGMRTPDAEEIHAAQTFLQSQGVTV 322


>gi|242237917|ref|YP_002986098.1| lysine 2,3-aminomutase YodO family protein [Dickeya dadantii
           Ech703]
 gi|242129974|gb|ACS84276.1| lysine 2,3-aminomutase YodO family protein [Dickeya dadantii
           Ech703]
          Length = 348

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 74/231 (32%), Gaps = 48/231 (20%)

Query: 85  TRKWLLRFPARCIGGPVE-----IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
           T K            P++     +  +     +R  L V    GC++ C +C        
Sbjct: 78  TSKAEFLLTPGFTNDPLDEQRSVVPGLLHKYHNRALLLVKG--GCAVNCRYC------FR 129

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL----CNFD 195
           R+   +E                     + +       ++  I+  G G+PL       D
Sbjct: 130 RHFPYQE------------NQGSKANWRQALDYIRQHPELDEIIFSG-GDPLMAKDHELD 176

Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255
            +   L   +    L     R+ +     +P          +  A+SL    + L+ +LV
Sbjct: 177 GLLTGLEEITHLKRLRI-HSRLPV----VIPA--------RITEALSLRLAQSRLQILLV 223

Query: 256 PI-NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
              N    ++  +    H    +    +  + V+L+G+NDS   A  L  +
Sbjct: 224 THINHANEIDAELAQGLHRLRRA-GVTLLNQSVLLRGVNDS---ADELANL 270


>gi|305663030|ref|YP_003859318.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
 gi|304377599|gb|ADM27438.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230]
          Length = 267

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 95/242 (39%), Gaps = 26/242 (10%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           C+  C  C      +  +  + EI   ++   R +   +   + +  + + +     + I
Sbjct: 24  CNFRCLGCI-RRLGIWDSHLSREIRDILMSFYRDVESVYLSIDALRSIALYTKDFLDARI 82

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
            ++G GEP  +    ++ + I +   G+      I + T+G+     I  +G+ +   + 
Sbjct: 83  AILGGGEPTAD-KMFREVVEILN---GIDM---EIRVLTNGYNLDRYIDILGD-VDAYIV 134

Query: 241 ISLHAVSNDLRNI-LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           +S+ ++    R+  L    R   L+ ++             RI+ E + + G ND P D 
Sbjct: 135 LSIKSID---RDKHLFYTGR--DLDTILKNFVEVYRR--GLRISIETIDIPGFND-PSDI 186

Query: 300 LNLIKILKGIPAKINLI--PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357
             L   +  I   I LI   + P P   +    + +++   +  ++   +  +R   GL+
Sbjct: 187 EKLAMYISSIDPSIELIIDSYIPVPQTPWGRPSETEMLEAGKRARKYLKNVYLR---GLE 243

Query: 358 IL 359
           I 
Sbjct: 244 IS 245


>gi|294792850|ref|ZP_06757997.1| radical SAM domain protein [Veillonella sp. 6_1_27]
 gi|294456749|gb|EFG25112.1| radical SAM domain protein [Veillonella sp. 6_1_27]
          Length = 575

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 74/266 (27%), Gaps = 47/266 (17%)

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDG-------------TRKWLLRFPARCIGGPVEIETV 106
           +R  L     +  P +     S DG             T K   R       G   +   
Sbjct: 186 LRQ-LADISGVYVPSLYVPIYSEDGEFKGYDIAEGVPKTIK---RHFEMLTSGGETVVAT 241

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
               +      +    GC   C FC  G    V  +   +IL + +     LG   G   
Sbjct: 242 NY-TEFGAMYIIEVARGCGRHCRFCMAGYCFRVPRVRPLDILKEGVERAEKLGKKVGLMG 300

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
                 P V               L N+        I S  M  S +  R    T   V 
Sbjct: 301 AAISDYPEVDE-------------LVNY--------IRSKDMRYSCASLRADSLTQAVVD 339

Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
               + +     + I+    S  LR ++   N+    E  +         S  + +   Y
Sbjct: 340 G---LADSGQKTITIAPETGSERLRRVI---NKGIS-EEHLQNAATLSAKSGIQHMRL-Y 391

Query: 287 VMLKGINDSPRDALNLIKILKGIPAK 312
           +M+    ++  D   ++ + +   A 
Sbjct: 392 IMIGLPTETDEDIEAIVGLAERTQAH 417


>gi|156937491|ref|YP_001435287.1| radical SAM domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566475|gb|ABU81880.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 352

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 83/236 (35%), Gaps = 41/236 (17%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           TL VS    C+  C FC++                          D     D + +   +
Sbjct: 12  TLRVSVTERCNFNCIFCHSEGAG------------------RGSFDELSVNDYDMIAEAT 53

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGF-VPNIARV 231
               +  +   G GEPL   D   +   I       G       I+++T+GF +P     
Sbjct: 54  SRLGLKYVKFTG-GEPLLRSD--LE--EIIHSFKEHGF----EEISITTNGFLLPERTEG 104

Query: 232 GEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
            +E GV  + +SLH++    R     I     L  +++       L N   +    V+L+
Sbjct: 105 LKEAGVSWINVSLHSL---KRQRFRRITGVDALNRVLNGIEK--ALENGIEVRVNVVVLR 159

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY---LCSDQKDIVTFSECIKR 343
           GIN    +   ++K   G  A +++I  +P     +       ++ I    + ++ 
Sbjct: 160 GIN--EDEVEEIVKYAIGKGASVHVIELHPVGNGAHIFRERHSREPIERLKKWLEE 213


>gi|57641163|ref|YP_183641.1| molybdenum cofactor biosynthesis protein A [Thermococcus
           kodakarensis KOD1]
 gi|57159487|dbj|BAD85417.1| probable molybdenum cofactor biosynthesis protein A [Thermococcus
           kodakarensis KOD1]
          Length = 419

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 81/229 (35%), Gaps = 23/229 (10%)

Query: 85  TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
           T++ +L          +      + ++    + V    GC+L+C FC        R    
Sbjct: 86  TKRKVLYIHEGLDVPLLGYNAFGLIDRGTNLIQVRGVSGCNLSCVFCSVDEGPYSR---- 141

Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV--KKSLS 202
              L  V+    L+  F     I+G  + +         + G GEPL     V   ++L 
Sbjct: 142 TRKLDYVVDIDYLMKWFDEVARIKGKGLEAH--------LDGQGEPLIYPFRVELVQALR 193

Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP 262
                     S +  +  T      +  + E     + +S+H++  D   +L+   + Y 
Sbjct: 194 --EHPNVSVISMQ--SNGTLLNDKLVEELAEAGLDRVNLSIHSLDPDKAKMLMGR-KDYD 248

Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311
           L+ ++D             +    V++ G+ND+   A   I+  + I A
Sbjct: 249 LQHVLDMAEALVNA--GIDVLIAPVIIFGVNDNE--AEAFIEFARKIGA 293


>gi|317497375|ref|ZP_07955698.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316895444|gb|EFV17603.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 304

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 81/224 (36%), Gaps = 44/224 (19%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
           EKS  T C+S    C+  C       Q     +   EI+ QVL          G   + G
Sbjct: 84  EKSLCTDCLS----CTKVCPAMAMKQQGKP--MEISEIIDQVLRQELFYHHGEGGLTVSG 137

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-- 227
                             GEPL + D +   + +  ++           + T G+     
Sbjct: 138 ------------------GEPLSHGDWL---IRLLKEAKKHRL---HTAIETCGYASYEV 173

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKY---PLEMLIDACRHYPGLSNARRITF 284
           +  V   + V +   + +++++        +++Y     ++++D  +     +   +IT 
Sbjct: 174 LKEVINYLDV-IFFDIKSMNDEK-------HKRYTGKSNQIILDNFKQLVQDAKTTKITA 225

Query: 285 EYVMLKGINDSPRDALNLIKIL-KGIPAKINLIPFNPWPGCEYL 327
              ++ G ND+  +   + + + KG      ++P++ +   +Y 
Sbjct: 226 RTPVIPGFNDTVEELEEIQRFVAKGKNVSYEMLPYHRFGKGKYE 269


>gi|149254|gb|AAA25107.1| nitrogen fixation B (nifB) [Klebsiella pneumoniae]
          Length = 468

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 55/148 (37%), Gaps = 20/148 (13%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
           P    ++   +     ++S + + G G+PL N     ++L +  +         ++ LST
Sbjct: 82  PEQAVVKVRQVAQAIPQLSVVGIAGPGDPLANIARTFRTLELIRE----QLPDLKLCLST 137

Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYP--------LEMLI 267
           +G      + R+ +     + ++++ +  ++   +         +Y         +   +
Sbjct: 138 NGLMLPDAVDRLLDVGVDHVTVTINTLDAEIAAQIYAWLWLDGERYSGREGGEILIARQL 197

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDS 295
           +  R          +    V++ GINDS
Sbjct: 198 EGVRRLTAK--GVLVKINSVLIPGINDS 223


>gi|304439709|ref|ZP_07399609.1| radical SAM protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371815|gb|EFM25421.1| radical SAM protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 305

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 69/205 (33%), Gaps = 20/205 (9%)

Query: 104 ETVY-IPEKSRGTLCVSSQVGCSLT-CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           E VY IP K  G  C +    C +  C FC               I  QV    + + D 
Sbjct: 16  EKVYKIPIKVEGLSCPNRDGTCGVGGCIFCGEEGGSFE--NREGSIKEQVQKNIAHIEDR 73

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
                    +       +         E     + VK S  I     G++ S  R    T
Sbjct: 74  YNAHKFIAYIQNYTATYMELENFKKTIE-----EAVKASERIV----GVNISA-RPDFLT 123

Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
            G +  + ++ E+  V L + L   +      LV INR + L   IDA +         R
Sbjct: 124 DGHLDYLEKLNEKYMVTLEVGLQTPNYHT---LVKINRGHLLSDYIDAVQRI--KRRGLR 178

Query: 282 ITFEYVMLKGINDSPRDALNLIKIL 306
           I+   ++L    D   DA+    I+
Sbjct: 179 ISTH-LILNLPYDDDLDAIESANII 202


>gi|251781842|ref|YP_002996144.1| pyruvate formate-lyase activating enzyme [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390471|dbj|BAH80930.1| pyruvate formate-lyase activating enzyme [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|322411188|gb|EFY02096.1| Pyruvate formate-lyase activating enzyme [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
 gi|323126656|gb|ADX23953.1| Pyruvate formate-lyase activating enzyme [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 287

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 70/236 (29%), Gaps = 49/236 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E+        +           E +       K   I
Sbjct: 59  GCKMRCQYCH--------NPDTWEM-----ETNNSKLRTVNDVLKEALQYKHFWGKKGGI 105

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--------PNIARVGEE 234
            + G GE +   D    +L   +++  L       TL T GF           + ++   
Sbjct: 106 TVSG-GEAMLQID-FITAL--FTEAKKLGI---HTTLDTCGFAYRPTPEYHEVLDKLLAV 158

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               L +      ++ ++ +V       +         Y        +   +V++ G+ D
Sbjct: 159 TD--LILLDLKEIDEEQHKIVTRQPNQNILEF----ARYLS-DKQIPVWIRHVLVPGLTD 211

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVT 336
                + L + +K +    K  ++P++     ++                ++ +  
Sbjct: 212 IDDHLVRLGEFVKTLKNVDKFEVLPYHTMGEFKWRELGIPYQLEGVKPPTKERVQN 267


>gi|295093453|emb|CBK82544.1| Radical SAM superfamily. [Coprococcus sp. ART55/1]
          Length = 219

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 64/189 (33%), Gaps = 27/189 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C  +C FC   T+K   N T             L    P  E++  +        I+ +V
Sbjct: 37  CPCSCVFCLRQTKKQQENNTLW-----------LKDGEPSVEEVLKLFSKYDLNVINELV 85

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA------RVGEEIGV 237
             G GEPL   ++V   +    ++        ++ L+T G    I        +   I  
Sbjct: 86  FCGFGEPLERLEDVCAVIDSLKNTY----PNLKVRLNTIGLANLIYGRDVTPELEGRID- 140

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI--NDS 295
            ++ISL+A        L     +Y +    +A + +  LS          +++ +   D 
Sbjct: 141 TVSISLNAPDEKEFLELTRS--RYGI-QSYEAIKEFAVLSKRYVPNVVMTVVEKVMPEDK 197

Query: 296 PRDALNLIK 304
                 + K
Sbjct: 198 IEKCRQICK 206


>gi|315607677|ref|ZP_07882671.1| GntS protein [Prevotella buccae ATCC 33574]
 gi|315250613|gb|EFU30608.1| GntS protein [Prevotella buccae ATCC 33574]
          Length = 210

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 43/187 (22%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L CSFC T  +   R +T++E++  V       G  P   D          R    +
Sbjct: 35  GCNLACSFCDTDFRAY-REMTSDEVVNTV------KGILPSFVDNRSGEGVGTARSSVLV 87

Query: 183 VMMGMGEPLCNFD-NVKKSL------SIASDSMGLSFSKRRITLSTSGFVPNIARV---- 231
           V+ G GEP    D ++  +L       +A +S G           T    PN+  +    
Sbjct: 88  VLTG-GEPTLQVDFDLIDALHHAGFPEVAMESNG-----------TKEPPPNLDWLTVSP 135

Query: 232 GEEIGVMLAISLHAVSND--------LRNI---LVPINRKYPL--EMLIDACRHYPGLSN 278
            E++ V     L  + ++        +R     L P +   P+    +I AC  Y     
Sbjct: 136 KEQVSVNRCNELKCLFDESGRADDCGIRADFYYLQPCDTGDPVRNAEIIAACTEYIKQHP 195

Query: 279 ARRITFE 285
             +++ +
Sbjct: 196 KWQLSLQ 202


>gi|288924671|ref|ZP_06418608.1| radical SAM [Prevotella buccae D17]
 gi|288338458|gb|EFC76807.1| radical SAM [Prevotella buccae D17]
          Length = 206

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 43/187 (22%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+L CSFC T  +   R +T++E++  V       G  P   D          R    +
Sbjct: 31  GCNLACSFCDTDFRAY-REMTSDEVVNTV------KGILPSFVDNRSGEGVGTARSSVLV 83

Query: 183 VMMGMGEPLCNFD-NVKKSL------SIASDSMGLSFSKRRITLSTSGFVPNIARV---- 231
           V+ G GEP    D ++  +L       +A +S G           T    PN+  +    
Sbjct: 84  VLTG-GEPTLQVDFDLIDALHHAGFPEVAMESNG-----------TKEPPPNLDWLTVSP 131

Query: 232 GEEIGVMLAISLHAVSND--------LRNI---LVPINRKYPL--EMLIDACRHYPGLSN 278
            E++ V     L  + ++        +R     L P +   P+    +I AC  Y     
Sbjct: 132 KEQVSVNRCNELKCLFDESGRADDCGIRADFYYLQPCDTGDPVRNAEIIAACTEYIKQHP 191

Query: 279 ARRITFE 285
             +++ +
Sbjct: 192 KWQLSLQ 198


>gi|294678386|ref|YP_003579001.1| [pyruvate formate-lyase]-activating enzyme [Rhodobacter capsulatus
           SB 1003]
 gi|294477206|gb|ADE86594.1| [pyruvate formate-lyase]-activating enzyme-2 [Rhodobacter
           capsulatus SB 1003]
          Length = 262

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 76/247 (30%), Gaps = 51/247 (20%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC   C +C+   T      R +  E+++ +V    S L    G                
Sbjct: 47  GCQFRCLYCHNPDTWKLHAGRRVAVEDLVAEVAPLASFLKFAGG---------------- 90

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN--IARVGEEIGV 237
             +   G GEP+     V  +     D  GL      + L T G + +       + I  
Sbjct: 91  --VTFSG-GEPMMQAAFVHATARALKDRFGL-----HVALDTQGHLHDRVTDDWFDPID- 141

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           ++ + +  +       L       PL+  +D       L    RI   YV++ G  D+P 
Sbjct: 142 LVMLDIKHIDPARHLALTAQ----PLQPTLDCADRMVRLGKKMRI--RYVLVPGWTDAPE 195

Query: 298 DALNLIKILKGIPAKINL---IPFNPWPGCEY------------LCSDQKDIVTFSECIK 342
           D   +   +  +   + L   +PF+     ++                 +         +
Sbjct: 196 DIARMADHVARLGPAVELVEVLPFHQLGASKWAMLGHPYALADTPTPAPEATEAARAVFR 255

Query: 343 RSGYSSP 349
             G ++ 
Sbjct: 256 ARGLTAF 262


>gi|219850973|ref|YP_002465405.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
 gi|219545232|gb|ACL15682.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c]
          Length = 303

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 24/152 (15%)

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-FVPNIARVGEEIGV-ML 239
           I + G GEPL N +   ++L +  +      S  R  +ST+G  +P    + E+ GV  +
Sbjct: 99  IGIAGPGEPLAN-EETFETLRLVHE---FFPSTIR-CISTNGLLLPEKIDLLEKYGVGNV 153

Query: 240 AISLHAVSNDLRNILV----PINRKYP--------LEMLIDACRHYPGLSNARRITFEYV 287
            ++L+A+  ++   +         +Y         LE  +        +     +    V
Sbjct: 154 TVTLNALDPEVGAKIYSFINYHGNRYEGVEGAKILLENQLKGIE--LAVKKHMIVKINTV 211

Query: 288 MLKGINDSPRDALNLIKILKGIPAK-INLIPF 318
            + G+ND     L + +    + A   NLIP 
Sbjct: 212 YIPGVND--DQILEIARKTSAMGAYTFNLIPL 241


>gi|28379672|ref|NP_786564.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum WCFS1]
 gi|254557826|ref|YP_003064243.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum JDM1]
 gi|300766730|ref|ZP_07076646.1| pyruvate formate-lyase activating enzyme [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|28272512|emb|CAD65436.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum WCFS1]
 gi|254046753|gb|ACT63546.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum JDM1]
 gi|300495681|gb|EFK30833.1| pyruvate formate-lyase activating enzyme [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 273

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 84/252 (33%), Gaps = 59/252 (23%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T    +   +TA+EIL                   +     +   K 
Sbjct: 43  GCHMRCQYCHNPDTWKLNVGDQMTADEILE------------------DAAKYRAFWGKT 84

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARV 231
             I + G GE L   D +   L +   +  ++ S     L TSG        F     R+
Sbjct: 85  GGITVSG-GESLVQIDFI---LDLFEKAKAMNISTC---LDTSGQPFTREQPFFDKFERL 137

Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
            +   + L + +  + +     L     +Y  E ++D  ++     +   +   +V++  
Sbjct: 138 MKVTDISL-VDIKHIDSAKHKQLT----QYGNENILDMIQYMAQ--HHDDMWIRHVLVPQ 190

Query: 292 INDSPRDALNLIKILKGIPA----KINLIPFNPWPGCEY------------LCSDQKDIV 335
             D   D   L   +  IP     K+ ++P++     +Y                Q  + 
Sbjct: 191 RTDYDEDLKKLGDYIAKIPNDVVQKVEVLPYHTLGVKKYHEMKIKYRLEGIESPTQDRVA 250

Query: 336 TFSECIKRSGYS 347
              + +  + Y+
Sbjct: 251 NAEKLLHTADYN 262


>gi|317060665|ref|ZP_07925150.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D12]
 gi|313686341|gb|EFS23176.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D12]
          Length = 242

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 83/246 (33%), Gaps = 54/246 (21%)

Query: 123 GCSLTCSFCY-TGTQKLV-RN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           GC L C +C+   T  L   N   TAEEIL +V   R+                      
Sbjct: 28  GCPLRCRYCHNVDTWNLQHPNYIYTAEEILQEVNRVRAF--------------------- 66

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIG 236
           ++  V +  GEPL   D VK+         G+        L TSG++       V EE  
Sbjct: 67  LTGGVTVSGGEPLLQADFVKEFFQ-LCHKNGI-----HTALDTSGYIFTEKSKEVLEETD 120

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           ++L + +  +  +    L  +   +P    ++        +        YV++ G  D  
Sbjct: 121 LVL-LDIKHIDPEKYYDLTSVEL-FPSLQFLEYLHKIQKDT-----WVRYVLVPGYTDDI 173

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
            D       +       +++++PF+     ++                +++I+   E  +
Sbjct: 174 EDLKKWAAYVSQYSNIKRVDILPFHQMAIYKWEKERRDYSLKDVLPPTKEEIILAEELFR 233

Query: 343 RSGYSS 348
             G   
Sbjct: 234 SYGLPV 239


>gi|291528757|emb|CBK94343.1| pyruvate formate-lyase 1-activating enzyme [Eubacterium rectale
           M104/1]
          Length = 249

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 41/239 (17%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C +C+        N        +              E ++  +      K +  
Sbjct: 30  GCNMRCKYCH--------NPDTWAKCGE----NDGAKLMTPQEVLKTAMRYKAYWKQTGG 77

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARVGEEIGVM- 238
           + +  GE L   D V +   +A +      L  S    T+      P   +  E +    
Sbjct: 78  ITVSGGEALLQIDFVTELFKLAKEKGVNTCLDTSGNPFTV----EEPFFGKFNELMKYTD 133

Query: 239 -LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
              + +  + ++    L     K  L+M       Y    N +++   +V++ GI    R
Sbjct: 134 LFMLDIKHIDDEEHKKLTGQTNKNILDMA-----QYLS-KNGKKMWIRHVLVPGITTDER 187

Query: 298 DALNLIKILKGIPA--KINLIPFNPWP-------GCEYL-----CSDQKDIVTFSECIK 342
               L + +  +    ++ ++P++          G  Y         ++ I      + 
Sbjct: 188 YLKQLREFIDTLKTVDRVEVLPYHTLGVFKWKELGIPYQLEGVEPPTEEQIECAKRILN 246


>gi|257463063|ref|ZP_05627465.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D12]
          Length = 241

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 83/246 (33%), Gaps = 54/246 (21%)

Query: 123 GCSLTCSFCY-TGTQKLV-RN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           GC L C +C+   T  L   N   TAEEIL +V   R+                      
Sbjct: 27  GCPLRCRYCHNVDTWNLQHPNYIYTAEEILQEVNRVRAF--------------------- 65

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIG 236
           ++  V +  GEPL   D VK+         G+        L TSG++       V EE  
Sbjct: 66  LTGGVTVSGGEPLLQADFVKEFFQ-LCHKNGI-----HTALDTSGYIFTEKSKEVLEETD 119

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           ++L + +  +  +    L  +   +P    ++        +        YV++ G  D  
Sbjct: 120 LVL-LDIKHIDPEKYYDLTSVEL-FPSLQFLEYLHKIQKDT-----WVRYVLVPGYTDDI 172

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342
            D       +       +++++PF+     ++                +++I+   E  +
Sbjct: 173 EDLKKWAAYVSQYSNIKRVDILPFHQMAIYKWEKERRDYSLKDVLPPTKEEIILAEELFR 232

Query: 343 RSGYSS 348
             G   
Sbjct: 233 SYGLPV 238


>gi|255654246|ref|ZP_05399655.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile QCD-23m63]
 gi|296452531|ref|ZP_06894228.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP08]
 gi|296881057|ref|ZP_06905000.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP07]
 gi|296258636|gb|EFH05534.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP08]
 gi|296427923|gb|EFH13827.1| pyruvate formate-lyase activating enzyme [Clostridium difficile
           NAP07]
          Length = 316

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 23/187 (12%)

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           R    +   G GEPL   + +     +      ++     I  S         ++ E+I 
Sbjct: 134 RSNGGVTFSG-GEPLLQHEFL---HEVLLKCHEVNI-HTAIETSACVSSEVFNKIFEDID 188

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
                  H      R         Y  ++++    +        R+     ++ G NDS 
Sbjct: 189 FAFIDIKHM----DREKHKEQTGVYN-DLILKNISNLANSDWNGRLVLRVPVISGFNDSV 243

Query: 297 RDALNLIKIL-KGIPAKINLIPFNPWPGC-------EYLCSDQKDI-----VTFSECIKR 343
           ++  ++I  + K    +INL+PF+            EY  SD+ D+         +    
Sbjct: 244 KNISDIISFMHKNNLVEINLLPFHRLGESKWVQLGKEYEYSDKGDVDEGHLEELQDIFLD 303

Query: 344 SGYSSPI 350
           +G +  +
Sbjct: 304 NGIACYV 310


>gi|301052164|ref|YP_003790375.1| formate acetyltransferase activating enzyme [Bacillus anthracis CI]
 gi|300374333|gb|ADK03237.1| formate acetyltransferase activating enzyme [Bacillus cereus biovar
           anthracis str. CI]
          Length = 243

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 76/243 (31%), Gaps = 50/243 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N    EI       +                +P +      I
Sbjct: 28  GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234
            + G GEPL   D +   + +      +       T+ +SG        F   +  + E 
Sbjct: 74  TVSG-GEPLLQLDFL---IELFKKCKEIGI---HTTIDSSGGCYSEEPEFQNKLDILMEY 126

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             ++L    H  S   R +    N        I     Y    N   I   +V++ G+ D
Sbjct: 127 TDLVLLDLKHIDSKKHRKLTGKPN------EHILQFARYLSDKNK-PIWVRHVLVPGVTD 179

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340
           +  D   L   ++ +    KI ++P++          G +Y         +K++      
Sbjct: 180 NEEDLQKLSSFIQSLSNVQKIEVLPYHKLGVYKWEALGHKYPLANVEPPTEKNVEQARHI 239

Query: 341 IKR 343
           ++ 
Sbjct: 240 LQA 242


>gi|296129568|ref|YP_003636818.1| pyruvate formate-lyase activating enzyme [Cellulomonas flavigena
           DSM 20109]
 gi|296021383|gb|ADG74619.1| pyruvate formate-lyase activating enzyme [Cellulomonas flavigena
           DSM 20109]
          Length = 293

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 86/251 (34%), Gaps = 59/251 (23%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC L C +C+   T   +   ++TA+E+L ++   R +     G   I G          
Sbjct: 78  GCPLRCLYCHNPDTMQMRRGTDVTADELLARIARYRGVFRATGGGVTISG---------- 127

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIG- 236
                   GEPL     V++ +       G +     + + TSG++       + +++  
Sbjct: 128 --------GEPLMQPAFVRRLVR------GAAAMDVPVAIDTSGYLGAHATDEMLDDVSL 173

Query: 237 VMLAISLHAVSNDLR---NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
           V+L +        LR     L P          +D  R         R+   +V++ G+ 
Sbjct: 174 VLLDVKSGLPETYLRVTGRELQP---------TLDFGRRLAAR--GTRMWIRFVLVPGLT 222

Query: 294 DSPRDALNLIKILKGIP---AKINLIPFNPWPGCEY------------LCSDQKDIVTFS 338
           D+P +   +   +  +     ++ ++PF+     ++                 +      
Sbjct: 223 DAPENVAAVADYVASLGEAVERVEVLPFHQMGRDKWADLGMRYELDDTEPPTPEATEVVR 282

Query: 339 ECIKRSGYSSP 349
           +  +  G ++ 
Sbjct: 283 DAFRARGLTTF 293


>gi|206895928|ref|YP_002247164.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Coprothermobacter
           proteolyticus DSM 5265]
 gi|229890499|sp|B5Y8R7|MIAB_COPPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|206738545|gb|ACI17623.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 426

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 22/161 (13%)

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTG-TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
           K + ++ VS   GC   C++C    T+  V++   E IL +V   R  + +      + G
Sbjct: 131 KEKHSVYVSIMKGCDDFCTYCIVPFTRGRVQSRDPESILEEV---RVCVDNGAVEITLLG 187

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229
             +   G+ +S    + + E +   D V++ +         +F K  IT           
Sbjct: 188 QNVNDYGKDLSGWDFVSLVERVATIDGVRR-IRFM-SPHPANFKKDDIT----------- 234

Query: 230 RVGEEIGVMLAI--SLHAVSNDLRNILVPINRKYPLEMLID 268
           R+     V       L +  +++   L  +NRKY      +
Sbjct: 235 RLANLPQVAPYYHLPLQSGDDEI---LRRMNRKYTTGEFAE 272


>gi|30260669|ref|NP_843046.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Ames]
 gi|47525780|ref|YP_017129.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49183510|ref|YP_026762.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Sterne]
 gi|65317928|ref|ZP_00390887.1| COG1180: Pyruvate-formate lyase-activating enzyme [Bacillus
           anthracis str. A2012]
 gi|165870717|ref|ZP_02215370.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0488]
 gi|167634817|ref|ZP_02393136.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0442]
 gi|167640786|ref|ZP_02399045.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0193]
 gi|170688631|ref|ZP_02879837.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0465]
 gi|170707180|ref|ZP_02897636.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0389]
 gi|177655125|ref|ZP_02936755.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0174]
 gi|190568214|ref|ZP_03021123.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034574|ref|ZP_03101982.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus W]
 gi|218901649|ref|YP_002449483.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH820]
 gi|227816618|ref|YP_002816627.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           CDC 684]
 gi|228913196|ref|ZP_04076835.1| hypothetical protein bthur0012_4400 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925699|ref|ZP_04088786.1| hypothetical protein bthur0010_4250 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931938|ref|ZP_04094832.1| hypothetical protein bthur0009_4230 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944262|ref|ZP_04106638.1| hypothetical protein bthur0007_4370 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229120107|ref|ZP_04249359.1| hypothetical protein bcere0016_4240 [Bacillus cereus 95/8201]
 gi|229601335|ref|YP_002865113.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0248]
 gi|254686898|ref|ZP_05150756.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725978|ref|ZP_05187760.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A1055]
 gi|254738875|ref|ZP_05196577.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Western North America USA6153]
 gi|254743741|ref|ZP_05201426.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Kruger B]
 gi|254756280|ref|ZP_05208309.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Vollum]
 gi|254762099|ref|ZP_05213948.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Australia 94]
 gi|30254037|gb|AAP24532.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Ames]
 gi|47500928|gb|AAT29604.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49177437|gb|AAT52813.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           Sterne]
 gi|164713551|gb|EDR19075.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0488]
 gi|167511180|gb|EDR86567.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0193]
 gi|167529891|gb|EDR92639.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0442]
 gi|170127958|gb|EDS96829.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0389]
 gi|170667491|gb|EDT18248.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0465]
 gi|172080274|gb|EDT65364.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0174]
 gi|190560706|gb|EDV14682.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992617|gb|EDX56577.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus W]
 gi|218536292|gb|ACK88690.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH820]
 gi|227003394|gb|ACP13137.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           CDC 684]
 gi|228663345|gb|EEL18933.1| hypothetical protein bcere0016_4240 [Bacillus cereus 95/8201]
 gi|228815413|gb|EEM61658.1| hypothetical protein bthur0007_4370 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827723|gb|EEM73463.1| hypothetical protein bthur0009_4230 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833974|gb|EEM79524.1| hypothetical protein bthur0010_4250 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846601|gb|EEM91614.1| hypothetical protein bthur0012_4400 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229265743|gb|ACQ47380.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str.
           A0248]
          Length = 243

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 76/243 (31%), Gaps = 50/243 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N    EI       +                +P +      I
Sbjct: 28  GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234
            + G GEPL   D +   + +      +       T+ +SG        F   +  + E 
Sbjct: 74  TVSG-GEPLLQLDFL---IELFKKCKEIGI---HTTIDSSGGCYSEETEFQNKLDILMEY 126

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             ++L    H  S   R +    N        I     Y    N   I   +V++ G+ D
Sbjct: 127 TDLVLLDLKHIDSKKHRKLTGKPN------EHILQFARYLSDKNK-PIWVRHVLVPGVTD 179

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340
           +  D   L   ++ +    KI ++P++          G +Y         +K++      
Sbjct: 180 NEEDLQKLSSFIQSLSNVQKIEVLPYHKLGVYKWEALGHKYPLANVEPPTEKNVEQARHI 239

Query: 341 IKR 343
           ++ 
Sbjct: 240 LQA 242


>gi|288957714|ref|YP_003448055.1| radical SAM domain protein [Azospirillum sp. B510]
 gi|288910022|dbj|BAI71511.1| radical SAM domain protein [Azospirillum sp. B510]
          Length = 480

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 30/197 (15%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
           P     +L VS    C+L C +CY G     +             A   +        +E
Sbjct: 98  PPLHALSLAVSQA--CNLGCGYCYAGQGSFGK-------------APRRMPLDTALAAVE 142

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR-------ITLST 221
            +V  +       +  MG GEPL N   V ++ +        + + RR       IT + 
Sbjct: 143 RLVNGAPEGGRVTLAFMG-GEPLVN-RPVIQAATR----HAFALAARRGVRVNGSITTNG 196

Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR-KYPLEMLIDACRHYPGLSNAR 280
           +   P      EE G  + ISL   ++   + L P    +   + ++             
Sbjct: 197 TLVTPEDGDFFEEFGFAVTISLDGPADQH-DRLRPFKDGRGSFDRIMANVAPLLKRQRRM 255

Query: 281 RITFEYVMLKGINDSPR 297
           +++    +     D P 
Sbjct: 256 QVSARVTVTPDNLDLPD 272


>gi|78187392|ref|YP_375435.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium luteolum
           DSM 273]
 gi|78167294|gb|ABB24392.1| Nitrogenase cofactor biosynthesis protein NifB [Chlorobium luteolum
           DSM 273]
          Length = 420

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 61/162 (37%), Gaps = 19/162 (11%)

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIG 236
           IS + + G G+P  N +   ++L +        F +  + ++T+G   +P I  + E   
Sbjct: 75  ISVVGIAGPGDPFANSEETMETLRLVRKE----FPEMLLCVATNGLNLMPFIPELKELEV 130

Query: 237 VMLAISLHAVSNDLRNILVPINRKYP-LEMLIDACR---------HYPGLSNARRITFEY 286
             + I+++A+   +   +    R    +   I+A                +         
Sbjct: 131 SHVTITINAIDPAIGAEIYAWVRHEKRMHRDIEAAELLIGNQLAALSALKAAGITAKVNT 190

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327
           +++ G+ND     L + + +  + A I N +P+       + 
Sbjct: 191 IIIPGVNDR--HVLAVAEKVSELGADILNCLPYYNTKETVFE 230


>gi|308181906|ref|YP_003926034.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308047397|gb|ADN99940.1| formate acetyltransferase activating enzyme [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 273

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 84/252 (33%), Gaps = 59/252 (23%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C +C+   T    +   +TA+EIL                   +     +   K 
Sbjct: 43  GCHMRCQYCHNPDTWKLNVGDQMTADEILE------------------DAAKYRAFWGKT 84

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARV 231
             I + G GE L   D +   L +   +  ++ S     L TSG        F     R+
Sbjct: 85  GGITVSG-GESLVQIDFI---LDLFEKAKAMNISTC---LDTSGQPFTREQPFFDKFERL 137

Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
            +   + L + +  + +     L     +Y  E ++D  ++     +   +   +V++  
Sbjct: 138 MKVTDISL-VDIKHIDSAKHKQLT----QYGNENILDMIQYMAQ--HHDDMWIRHVLVPQ 190

Query: 292 INDSPRDALNLIKILKGIPA----KINLIPFNPWPGCEY------------LCSDQKDIV 335
             D   D   L   +  IP     K+ ++P++     +Y                Q  + 
Sbjct: 191 RTDYDEDLKKLGDYIAKIPNDVVQKVEVLPYHTLGVKKYHEMKIKYRLEGIESPTQDRVA 250

Query: 336 TFSECIKRSGYS 347
              + +  + Y+
Sbjct: 251 NAEKLLHTADYN 262


>gi|256811036|ref|YP_003128405.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
 gi|256794236|gb|ACV24905.1| Radical SAM domain protein [Methanocaldococcus fervens AG86]
          Length = 315

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 73/216 (33%), Gaps = 31/216 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CS  C +C         N T E         R+        + ++  +      KI  + 
Sbjct: 27  CSYDCLYCQV---GRTLNKTTE--------RRNFYNPENIFKSVKEKIDKLSNEKIDYLT 75

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML-AIS 242
            +  GEP  +  N+ K + +  +    +     IT S+  +  ++    + +   L +  
Sbjct: 76  FVADGEPTLDI-NLSKEVEMLRN---FNIPIAIITNSSLIWKEDVK--NDLLNFDLVSFK 129

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           + +    L   +   ++   L+ +++    +      + IT E ++L  +N +    +  
Sbjct: 130 VDSTDEKLWMEINRPHKDLVLDKILEGIMDFRDSYKGKLIT-ETMILGNVNYTEEAIVKT 188

Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIV 335
            + LK +      +N              S +K + 
Sbjct: 189 AEFLKDLKPNKCYLN---------TPIRPSSEKHVK 215


>gi|328952064|ref|YP_004369398.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452388|gb|AEB08217.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 429

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 80/229 (34%), Gaps = 43/229 (18%)

Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
            R    + +   C+  C  C +      R+     +          +   P  E+I  + 
Sbjct: 182 ERWEAPLPTSPSCNARCLGCLSQQ---KRSPFPAPM--------KRIRFMPRPEEIAEVA 230

Query: 172 IPSVGRKISNIVMMGMG---EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228
           +P + +  + +   G G   EPL     +++++ +    +        + L+T+G     
Sbjct: 231 VPHLEQAENAVASFGQGCEGEPLLQGSTLQEAIRLIRRQVARGV----LNLNTNGSRSE- 285

Query: 229 ARVGEEIGVMLAISLHAVSNDLRNIL----------VPINRKYPLEMLIDACRHYPGLSN 278
                     +A  + A  + LR  L              + Y    ++ A +     + 
Sbjct: 286 ---------TVAHLVAAGLDSLRVSLNSARPTYYSAYYRPQDYHFTEVVAALK--AAKAG 334

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF-NPWPGCEY 326
             R++  Y++  G++D P +   L +++     +I+LI   N     +Y
Sbjct: 335 GARVSLNYLIFPGVSDDPAEVSALEELIAQT--RIDLIQLRNLNIDPDY 381


>gi|227500654|ref|ZP_03930703.1| possible [formate-C-acetyltransferase]-activating enzyme
           [Anaerococcus tetradius ATCC 35098]
 gi|227217241|gb|EEI82585.1| possible [formate-C-acetyltransferase]-activating enzyme
           [Anaerococcus tetradius ATCC 35098]
          Length = 320

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 76/230 (33%), Gaps = 38/230 (16%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           I     G   V   + C + C  C            A EI+ +      L+      +D 
Sbjct: 79  IHYMENGIHKVHRDITC-IGCRRCEKNCL-----QKAIEIVGEDKTITELMDVVKEDKDF 132

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
             M    +             E L    ++ ++    S   G++       + T G+ P 
Sbjct: 133 YMMSGGGLTVGGGEC--TAQAESL---KSLLEA----SHMDGIN-----TAIETCGYTP- 177

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKY----PLEMLIDACRHYPGLSNARRIT 283
             +  + I   + + L  +       + P+  KY      E ++   R+        R+ 
Sbjct: 178 -RKSLDLIKDHVDLFLFDI-----KQMDPVKHKYWTGVNNERILSNLRYLLENGKKVRVR 231

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKIN-----LIPFNPWPGCEYLC 328
               +LKG+NDS  +   ++  L+      N     L+P++ +   +Y+ 
Sbjct: 232 MP--ILKGVNDSHEEIKAVVDFLEDFKCFKNFDGIDLLPYHRYGVGKYVQ 279


>gi|15615505|ref|NP_243809.1| hypothetical protein BH2943 [Bacillus halodurans C-125]
 gi|10175565|dbj|BAB06662.1| BH2943 [Bacillus halodurans C-125]
          Length = 393

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 98/279 (35%), Gaps = 42/279 (15%)

Query: 45  RGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-------CDGTRKWLL----RFP 93
           + I +   +  I +E R  L Q        + D  +S        D  RK ++       
Sbjct: 5   KYIMNVDKIEQIPKEEREKLKQITDKFVFRVNDYYLSLIDWNDPNDPIRKLVIPNEGELS 64

Query: 94  ARCIGGPVEIETVYI----PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
                   + +T Y+      K   T  +     C   C +C+   ++L RN        
Sbjct: 65  EYGRWDASDEDTNYVVPGCQHKYETTALLICSEVCGAYCRYCF--RKRLFRN-------- 114

Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL-CNFDNVKKSLSIASDSM 208
                +  + D     D           +I+N+++ G G+PL      ++  +       
Sbjct: 115 ---DVKEAMSDVDPGLDYIAQTP-----QINNVLLTG-GDPLILATKKLRYIIERLRAID 165

Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
            +      I + +   V N  R+ E+   +L +     + D R  ++     +P+E+  +
Sbjct: 166 HVKI----IRIGSKLPVFNPMRITEDEQ-LLELIREYSTPDHRIYIMAH-INHPVEITNE 219

Query: 269 ACRHYPGLSNARRITFEYV-MLKGINDSPRDALNLIKIL 306
           A + +  L +A  I      +LKGIND P     L+  L
Sbjct: 220 ARQAFQALHDAGAIVVNQTPVLKGINDDPDVLAELLDKL 258


>gi|116749884|ref|YP_846571.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698948|gb|ABK18136.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 470

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 72/233 (30%), Gaps = 40/233 (17%)

Query: 124 CSLTCSFCYTGTQKLVRN---LTAEEILLQVLLARSL-LGDFPGCEDIEGMVIPSVGRKI 179
           C+  CS+CY   + L RN   +T EE+   +   +S   G  P     +           
Sbjct: 94  CNFNCSYCYLPEE-LRRNGKTMTPEEVCSALERLKSWFCGIMPAGARPQ----------- 141

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
             ++  G  EPL   + +   +    D          + L             ++ GV +
Sbjct: 142 --LIFHGS-EPLMAKEAIFAGMERFRDDFTFGIQSNGMLLDDEAIA-----FLKDHGVGI 193

Query: 240 AISLHAVSNDL----RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
            +SL A + D+    R           +  +I+    YP  +    +T        ++  
Sbjct: 194 GVSLDAPTADVANLTRRNWSGTGGFERVSEVIEKLASYPAFNVITTVT-----RGNVHTL 248

Query: 296 PRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345
           P     ++             N +      G +   SD+     F   + R+ 
Sbjct: 249 P----AMVDFYHQRGIATVMFNPVRCTQQGGRDLKPSDRVLAERFCRALDRAH 297


>gi|331269793|ref|YP_004396285.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum
           BKT015925]
 gi|329126343|gb|AEB76288.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum
           BKT015925]
          Length = 308

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGCEYLC 328
            ++   +S  + I     ++ G ND   + +      K    +KIN++P++     +Y  
Sbjct: 215 LKNISLVSKYKPILVRIPIIPGFNDDNENIICTANFCKSNNISKINILPYHKLGESKYRQ 274

Query: 329 ------------SDQKDIVTFSECIKRSGYSSPI 350
                        +   +      I+  G +  I
Sbjct: 275 LNIDYNLNNVLTPNADKMNHVKNLIENVGVTCII 308


>gi|210621731|ref|ZP_03292780.1| hypothetical protein CLOHIR_00725 [Clostridium hiranonis DSM 13275]
 gi|210154613|gb|EEA85619.1| hypothetical protein CLOHIR_00725 [Clostridium hiranonis DSM 13275]
          Length = 303

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 62/174 (35%), Gaps = 34/174 (19%)

Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS--LHAVSNDLRNILVPINRKYPL 263
              G++ S   + +    F+  +AR     G+ +AI    +A +      ++P   ++  
Sbjct: 124 SGGGVTLSGGEVMVQDIDFICELARGCRNKGIDVAIDTCGYAPTEHY-EKILPYANRFLF 182

Query: 264 EMLIDACRHYPGLSNARR----------------ITFEYVMLKGIN--DSPRDALNLIKI 305
           ++ +     +   +                    I     ++ G+N  D+  + + +I++
Sbjct: 183 DIKLVDEDKHKKFTGKSNDLILKNLKFLNDNGAYINIRIPLIGGVNVDDNNEEVMKMIEL 242

Query: 306 LKGIPAK-INLIPFNPW------------PGCEYLCSDQKDIVTFSECIKRSGY 346
           LK +  K +NL+P++               G E+     + +       + + +
Sbjct: 243 LKPLNIKAVNLLPYHDIGKHKYTKLDKEYEGNEFTKPSDEKMNEIKMIFENNNF 296


>gi|126665833|ref|ZP_01736814.1| molybdenum cofactor biosynthesis protein A [Marinobacter sp. ELB17]
 gi|126629767|gb|EBA00384.1| molybdenum cofactor biosynthesis protein A [Marinobacter sp. ELB17]
          Length = 330

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 63/194 (32%), Gaps = 30/194 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C +C       +          QVL    +        ++    I   G       
Sbjct: 25  CDFRCVYCMAEDMTFLPR-------QQVLTLEEIARLAHNFVELGTEKIRLTG------- 70

Query: 184 MMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
               GEPL     V++ +  + ++  G       +T + S        + +     L IS
Sbjct: 71  ----GEPL-----VRRGIVDLVTEIGGYGLRDFAMTTNGSQLSSMAEPLRKAGLHRLNIS 121

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L ++  +    +    +   +   IDA R     +  R I    V++KG ND  +D   L
Sbjct: 122 LDSLDAEKFRSITRTGKLSQVLEGIDAARE----AGFRGIKLNTVVMKGRND--QDVPEL 175

Query: 303 IKILKGIPAKINLI 316
           ++  +     I  I
Sbjct: 176 VEYARRKQVDITFI 189


>gi|78044893|ref|YP_361076.1| radical SAM domain-containing protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997008|gb|ABB15907.1| radical SAM domain protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 330

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 73/219 (33%), Gaps = 41/219 (18%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
                   T+      GC+  C FC         N    +I           G+    ED
Sbjct: 65  LYHFYPGSTILSVGTFGCNFRCGFCQ--------NYEISQIAE--------TGEKLLPED 108

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
           +  +      +++  +      EP+  ++   ++ +     +G      +  L T+GF+ 
Sbjct: 109 LVKLAQRYKSQEMIGVAYTYS-EPVVWYEY-IEASAPLIKELGF-----KTVLVTNGFIN 161

Query: 227 NIARVGEEIGV--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
               + + +     L I L  ++ +    +   +   P+   I+  + +        +  
Sbjct: 162 K-EPLKKILPFIDALNIDLKGITEEYYRDICQGSVT-PVLEAIETSKAF-----GAHVEV 214

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKINL---IPFNP 320
             +++ G+ND+P     L K L       NL   IP + 
Sbjct: 215 TTLLVPGLNDAPEQIEELAKFLA------NLDRDIPLHF 247


>gi|317497051|ref|ZP_07955379.1| radical SAM superfamily protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|291558902|emb|CBL37702.1| Fe-S oxidoreductases [butyrate-producing bacterium SSC/2]
 gi|316895711|gb|EFV17865.1| radical SAM superfamily protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 308

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 26/191 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+ +C +C  G    + N             +            E         K   + 
Sbjct: 30  CNYSCIYCQLGRTDKMTN-------------KRQEFYKTEDIIAEFKQYLKDSDKFDIVT 76

Query: 184 MMGMGEP--LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--ML 239
           ++G GEP    N   +  +L   +D        + + + T+G + +  +V EE+    M+
Sbjct: 77  VVGEGEPTLAANLGELVVALKALTD--------KPVAVITNGALLSDPQVREELCHADMV 128

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
             SL A + ++   +         E   +  + +  +     +  E +++ GIND  +  
Sbjct: 129 LPSLDAYNQEISKKIDRPYGTIKFEEEFEGLKKFTHMYEGE-LWLEIMLVDGINDDEQSI 187

Query: 300 LNLIKILKGIP 310
           L   ++LK + 
Sbjct: 188 LKFQELLKELK 198


>gi|282849924|ref|ZP_06259307.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
 gi|282580361|gb|EFB85761.1| radical SAM domain protein [Veillonella parvula ATCC 17745]
          Length = 575

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 74/266 (27%), Gaps = 47/266 (17%)

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDG-------------TRKWLLRFPARCIGGPVEIETV 106
           +R  L     +  P +     S DG             T K   R       G   +   
Sbjct: 186 LRQ-LADISGVYVPSLYVPIYSEDGEFKGYDIAEGVPKTIK---RHFEMLTSGGETVVAT 241

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
               +      +    GC   C FC  G    V  +   +IL + +     LG   G   
Sbjct: 242 NY-TEFGAMYIIEVARGCGRHCRFCMAGYCFRVPRVRPLDILKEGVERAEKLGKKVGLMG 300

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
                 P V               L N+        I S  M  S +  R    T   V 
Sbjct: 301 AAISDYPEVDE-------------LVNY--------IRSKDMRYSCASLRADSLTQAVVD 339

Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
               + +     + I+    S  LR ++   N+    E  +         S  + +   Y
Sbjct: 340 G---LADSGQKTITIAPETGSERLRRVI---NKGIS-EEHLQNAATLSAKSGIQHMRL-Y 391

Query: 287 VMLKGINDSPRDALNLIKILKGIPAK 312
           +M+    ++  D   ++ + +   A 
Sbjct: 392 IMIGLPTETDEDIEAIVGLAERTQAH 417


>gi|254410457|ref|ZP_05024236.1| nitrogenase cofactor biosynthesis protein NifB [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182663|gb|EDX77648.1| nitrogenase cofactor biosynthesis protein NifB [Microcoleus
           chthonoplastes PCC 7420]
          Length = 427

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 57/161 (35%), Gaps = 23/161 (14%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
           P    +    +     +IS   + G G+P  N +    ++ +  +     F    + L+T
Sbjct: 60  PAQAAVYMEKVLEKEPRISVAGIAGPGDPFANPEETLGTMRLLREK----FPDLILCLAT 115

Query: 222 SGF---VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP------------LEML 266
           +G       I  + E     + ++++A+  ++   +    R               LE  
Sbjct: 116 NGLNLKPEYIDEIAEIGVSHVTVTINAIDPEITRKVYRWVRHEKSVYQGLKGAKLLLERQ 175

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDS--PRDALNLIKI 305
           ++A +     +    +    +++ GIND      A  + ++
Sbjct: 176 LEAVKGL--KAAGITVKINCIVMPGINDHHVVEVAKAMAEL 214


>gi|241204967|ref|YP_002976063.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240858857|gb|ACS56524.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 348

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 38/192 (19%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C       +                    D    E+++ +    + R +S I 
Sbjct: 40  CDFRCTYCMAENMTFLP-----------------KKDLLTLEELDRLCSAFIARGVSKIR 82

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSK--RRITLSTSGFVPNIARVGEEI---GV- 237
           + G GEPL     V+K++      +G         +TL+T+G    ++R  EE+   GV 
Sbjct: 83  LTG-GEPL-----VRKNIMYLVRQLGQKIGAGLDELTLTTNG--SQLSRHAEELYDCGVR 134

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            + +SL  +  D    +        +   IDA +         +I    V LK  ND+  
Sbjct: 135 RINVSLDTLDPDKFRKITRWGDIAKVMEGIDAAQ-----KAGLKIKLNAVALKDFNDAE- 188

Query: 298 DALNLIKILKGI 309
               L++   G 
Sbjct: 189 -MPELLRFAHGR 199


>gi|222081659|ref|YP_002541024.1| Radical SAM protein [Agrobacterium radiobacter K84]
 gi|221726338|gb|ACM29427.1| Radical SAM protein [Agrobacterium radiobacter K84]
          Length = 357

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 16/143 (11%)

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
             R+ +     L + L  V+ ++R  ++P   +  +E  + + +    +    +++  Y+
Sbjct: 207 FQRMKDAGVDALGMHLEVVTPEIRARIMPGKAQVGIEKYMRSFKAAVEVFGRGQVS-TYI 265

Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSEC 340
           +  G+ D+    L + + L  I     ++PF P  G           + + +     S  
Sbjct: 266 L-AGLGDTREAILEICEELIAIGVYPFVVPFVPISGTPLESHPAPKPEFMHSILGPLSRM 324

Query: 341 IKRSGYSSPIRTPRGLDILAACG 363
           +  SG  +        DI A CG
Sbjct: 325 LVASGLKAV-------DIKAGCG 340


>gi|167767743|ref|ZP_02439796.1| hypothetical protein CLOSS21_02278 [Clostridium sp. SS2/1]
 gi|167710482|gb|EDS21061.1| hypothetical protein CLOSS21_02278 [Clostridium sp. SS2/1]
          Length = 325

 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 26/191 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+ +C +C  G    + N             +            E         K   + 
Sbjct: 47  CNYSCIYCQLGRTDKMTN-------------KRQEFYKTEDIIAEFKQYLKDSDKFDIVT 93

Query: 184 MMGMGEP--LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--ML 239
           ++G GEP    N   +  +L   +D        + + + T+G + +  +V EE+    M+
Sbjct: 94  VVGEGEPTLAANLGELVVALKALTD--------KPVAVITNGALLSDPQVREELCHADMV 145

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
             SL A + ++   +         E   +  + +  +     +  E +++ GIND  +  
Sbjct: 146 LPSLDAYNQEISKKIDRPYGTIKFEEEFEGLKKFTHMYEGE-LWLEIMLVDGINDDEQSI 204

Query: 300 LNLIKILKGIP 310
           L   ++LK + 
Sbjct: 205 LKFQELLKELK 215


>gi|297526565|ref|YP_003668589.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255481|gb|ADI31690.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 327

 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 92/272 (33%), Gaps = 58/272 (21%)

Query: 105 TVYIPEKSRGTLCVSSQVG---------CSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
           TVY P  SR   C    +G         C   C +C  G   +                +
Sbjct: 5   TVYGPHPSR---CFDWSLGVDVLLPPKRCPYNCVYCPLGRTSIK-------------TMK 48

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKI-SNIVMMGMGEPLCNFDN--VKKSLSIASDSMGLSF 212
             +   PG    E      V   I SNI++ G G+PL N+    + +++    +  G   
Sbjct: 49  PAMLIDPGTVKKELEEFIQVNGCIFSNILVWGHGDPLLNYHTPLIVRTIRETINQYGCRS 108

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN---DLRNILVPINRKYPLEMLIDA 269
           S   I + T+GF          + ++  I +    +   + R ++        + +LI+ 
Sbjct: 109 S---IRIRTTGFALGEKWALPLLDIVDEIII--PFDAAGETRQVINDPMDNAKISLLIET 163

Query: 270 CRHYPGLSNARRITFEYVMLK--GI-NDSPRDALNLIKILKGIPA-KINLIPFNPWPGCE 325
            R+ P  +  R+I FE  +LK  GI N        L   +      KI L   N      
Sbjct: 164 LRNIP-KTYRRKIAFETNLLKIDGIKNSDLPILDELTSYISSTGIMKIYLKTVN------ 216

Query: 326 YLCSDQKDIVT------F---SECIKRSGYSS 348
                 K ++       F    + +   GY+ 
Sbjct: 217 --RPSWKQMIKPVKGRLFTRVKDYLVDKGYTV 246


>gi|269798490|ref|YP_003312390.1| radical SAM protein [Veillonella parvula DSM 2008]
 gi|269095119|gb|ACZ25110.1| Radical SAM domain protein [Veillonella parvula DSM 2008]
          Length = 575

 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 74/266 (27%), Gaps = 47/266 (17%)

Query: 60  VRHLLNQHFSIIYPEIVDEKISCDG-------------TRKWLLRFPARCIGGPVEIETV 106
           +R  L     +  P +     S DG             T K   R       G   +   
Sbjct: 186 LRQ-LADVSGVYVPSLYVPIYSEDGEFKGYDIVEGVPKTIK---RHFEMLTSGGETVVAT 241

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
               +      +    GC   C FC  G    V  +   +IL + +     LG   G   
Sbjct: 242 NY-TEFGAMYIIEVARGCGRHCRFCMAGYCFRVPRVRPLDILKEGVERAEKLGKKVGLMG 300

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
                 P V               L N+        I S  M  S +  R    T   V 
Sbjct: 301 AAISDYPEVDE-------------LVNY--------IRSKDMRYSCASLRADSLTQAVVD 339

Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
               + +     + I+    S  LR ++   N+    E  +         S  + +   Y
Sbjct: 340 G---LADSGQKTITIAPETGSERLRRVI---NKGIS-EEHLQNAATLSAKSGIQHMRL-Y 391

Query: 287 VMLKGINDSPRDALNLIKILKGIPAK 312
           +M+    ++  D   ++ + +   A 
Sbjct: 392 IMIGLPTETDEDIEAIVGLAERTQAH 417


>gi|52549073|gb|AAU82922.1| Fe-S oxidoreductase [uncultured archaeon GZfos23H9]
          Length = 329

 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 26/230 (11%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+ +C +C  G            +  Q    +          +I+ + + S  R+I  + 
Sbjct: 30  CNYSCVYCQLGR--------TTHMTNQ---RKDFFPPEELLNEIKRVEVESSHREIDFVT 78

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI- 241
            +G GEP      + KSL           +   I + T+G +     V  ++    + + 
Sbjct: 79  FVGEGEP-----TLCKSLGWLIRKT-KEIADIPIAVDTNGSLLYREDVRNDLSQADIVMP 132

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           SL A + +    +    R    E +++    +    N   I  E +++KG+NDS  +   
Sbjct: 133 SLDAGTAETFRKINRPYRGLDFETVVEGLERFRRDYNGE-IWVEVMLVKGLNDSAGELEA 191

Query: 302 LIKILKGI---PAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKRSGYS 347
           L   L  I      IN+ P    P   + +  D++ I      +  +   
Sbjct: 192 LKSRLGKIEPNRTYINV-PI-RPPAEPWAVPPDKEAITLAHAILNDANVV 239


>gi|150018969|ref|YP_001311223.1| radical SAM domain-containing protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905434|gb|ABR36267.1| Radical SAM domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 453

 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 76/196 (38%), Gaps = 23/196 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++   GC+L C +C+    +   +         V+ A          + I+ ++  S
Sbjct: 96  AICLNVIHGCNLRCKYCFADEGEYHGH-------GGVMSA------DTAKKAIDYVIKRS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVG 232
             RK   I + G GEP    D +K+ +  A D+      + R T++T+     P++    
Sbjct: 143 GPRKNIEIDLFG-GEPTLIMDTIKEIIKYARDNEEKWGKRVRFTMTTNATLLTPDMMDYM 201

Query: 233 EEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVM 288
           ++    + +SL     V++++R   +  ++    + ++   +         +  +     
Sbjct: 202 DKEMGNIILSLDGRKEVNDNVR---IKPDKSGSFDDIVPNIKEMIKRRTKGKTYYVRGTF 258

Query: 289 LKGINDSPRDALNLIK 304
            +   D   D + ++ 
Sbjct: 259 TRENTDFYEDVMAMVN 274


>gi|299133809|ref|ZP_07027003.1| lysine 2,3-aminomutase YodO family protein [Afipia sp. 1NLS2]
 gi|298591645|gb|EFI51846.1| lysine 2,3-aminomutase YodO family protein [Afipia sp. 1NLS2]
          Length = 357

 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 83/246 (33%), Gaps = 35/246 (14%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           +E +      R  + +     C++ C FC        R     E++              
Sbjct: 89  VEGIVHRYPDR--VLLKLVHVCAVYCRFC------FRR-----EMVG-----PGKDSALS 130

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
                + +       +I  +++ G G+PL    + ++   I +D   +   K  I   T 
Sbjct: 131 DHAYAKAIDYIRTHPEIWEVILTG-GDPL--MLSTRRLKEIVNDLAAIPHVKI-IRFHTR 186

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
             V + AR+ +E    +A +LH         L   + +        AC           +
Sbjct: 187 VPVADPARMTDE----VAEALHHPDVTTWVALHANHPRELTAEARAACARLIDR--GIPM 240

Query: 283 TFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNP---WPGCEYLCSDQKDIVTFS 338
             + V+L+G+ND+   A  L  +++     +I     +     PG  +L +  ++     
Sbjct: 241 VSQSVLLRGVNDT---AETLTALMRAFVECRIKPYYLHHGDLAPGTSHLRTTLEEGEALM 297

Query: 339 ECIKRS 344
             ++  
Sbjct: 298 RQLRGH 303


>gi|254374142|ref|ZP_04989624.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151571862|gb|EDN37516.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 328

 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 48/217 (22%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
            K  G + + +Q  C++ C +C+        N+                   PG +D   
Sbjct: 97  HKYHGRVLLIAQTSCAVHCRYCFRKEFDYKENI-------------------PGRKDWLQ 137

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGF 224
                   +    V++  G+PL N D + +     +        L   S+  + L     
Sbjct: 138 AFEYIANDQSIEEVILSGGDPLLNNDEILEFFIENIQQIPHIKRLRIHSRIPVVLPERMT 197

Query: 225 VPNIARVGEE-IGVMLAISLHAVS--NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
              +  + E  +  +L I ++  +  +   + ++    KY + +L  +            
Sbjct: 198 TKLLKILSEHRLDTVLVIHVNHPNELDGNVSKILKEIHKYGIIILNQS------------ 245

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
                 +LK IND       L   L  I AK+  IP+
Sbjct: 246 -----TLLKDINDDANVLYALSTKL--INAKV--IPY 273


>gi|115373053|ref|ZP_01460356.1| radical SAM [Stigmatella aurantiaca DW4/3-1]
 gi|310821841|ref|YP_003954199.1| hypothetical protein STAUR_4592 [Stigmatella aurantiaca DW4/3-1]
 gi|115369965|gb|EAU68897.1| radical SAM [Stigmatella aurantiaca DW4/3-1]
 gi|309394913|gb|ADO72372.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 435

 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 45/125 (36%), Gaps = 8/125 (6%)

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST-SGFVPNIARVGEEIGVMLAISLHAV 246
           GEPL  +  + +++    +       K  I ++T +     +A + +     + +SL++ 
Sbjct: 253 GEPLTRYKAIAEAIRYMRERTD----KGSININTNASLTHGLATLFDAGLDAIRVSLNSA 308

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
             DL        + Y  E +  +            ++   ++  G+ D   +   L +++
Sbjct: 309 VKDLYEAYYKPVK-YTWEDVEASIA--LARERGAYLSLNLLLFPGVTDREGEVRALERLV 365

Query: 307 KGIPA 311
                
Sbjct: 366 SQYQV 370


>gi|260426240|ref|ZP_05780219.1| radical SAM domain protein [Citreicella sp. SE45]
 gi|260420732|gb|EEX13983.1| radical SAM domain protein [Citreicella sp. SE45]
          Length = 367

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           R+ +     L + L AV+ ++R  ++P     PLE    +      +    +++  Y++ 
Sbjct: 218 RMLDAGIDTLGMHLEAVTPEVRQRIMPGKASVPLEKYFSSFEAAVKVFGRGQVS-TYIL- 275

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFS--------ECI 341
            G+ D+    L + + L  +     ++PF P  G     S       F         + I
Sbjct: 276 AGLGDTREAILAMSERLCAMGVYPFVVPFVPISGTPLE-SHPAPSAAFMAGILRPLGQMI 334

Query: 342 KRSGYSSPIRTPRGLDILAACG 363
            R+G  S        D+ A CG
Sbjct: 335 ARAGILS-------SDMKAGCG 349


>gi|254369527|ref|ZP_04985538.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122481|gb|EDO66616.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 328

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 83/262 (31%), Gaps = 56/262 (21%)

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LL Q       E++D+  S D                  ++  +      R  + + +Q 
Sbjct: 62  LLKQVLPTADEEVIDQAYSSD----------PLDEKNYNKVPGLLHKYHGR--VLLIAQT 109

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
            C++ C +C+        N+                   PG +D           +    
Sbjct: 110 SCAVHCRYCFRKEFDYKENI-------------------PGRKDWLQAFEYIANDQSIEE 150

Query: 183 VMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGFVPNIARVGEE-IG 236
           V++  G+PL N D + +     +   S    L   S+  + L        +  + E  + 
Sbjct: 151 VILSGGDPLLNNDEILEFFIENIQRISHIKRLRIHSRIPVVLPERMTTKLLKILSEHRLD 210

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            +L + ++  +       +  N    L+ +           +   I  +  +LK IND  
Sbjct: 211 TVLVVHVNHPNE------LDGNVSKVLKEI---------HKHGIIILNQSTLLKDINDDA 255

Query: 297 RDALNLIKILKGIPAKINLIPF 318
                L   L  I AK+  IP+
Sbjct: 256 NVLYALSTKL--INAKV--IPY 273


>gi|297571030|ref|YP_003696804.1| pyruvate formate-lyase activating enzyme [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931377|gb|ADH92185.1| pyruvate formate-lyase activating enzyme [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 308

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 83/249 (33%), Gaps = 53/249 (21%)

Query: 122 VGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
            GC L C +C+   T   K    + A ++L ++   +++     G               
Sbjct: 92  AGCPLRCLYCHNPDTLKMKEGTAVRATDMLEKIARYKAVFTVSKGG-------------- 137

Query: 179 ISNIVMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEI 235
              +   G GEP+       K L  + +    +        + TSGF  V     +   +
Sbjct: 138 ---VTFSG-GEPMMQP----KFLARLLAGCKEIGI---HTAVDTSGFLGVNMTEEMLANV 186

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
            + L + + +   +             L   +   +      N ++I   +V++ G+ D+
Sbjct: 187 DLFL-LDVKSGVPEQ----YKRTTGRDLAPTLAFGKRLVE--NGKKIWIRFVLVPGLTDA 239

Query: 296 PRDALNLIKILKGIPA---KINLIPFNPWP-------GCEYL-----CSDQKDIVTFSEC 340
           P +   +  I++   +   ++ ++PF+          G EY         ++      + 
Sbjct: 240 PENVNAVADIVQSWASSVERVEVLPFHQMARDKWASLGLEYQLNDVEPPSKEATEAVRDI 299

Query: 341 IKRSGYSSP 349
            +  G +  
Sbjct: 300 FRSRGLTVF 308


>gi|170760779|ref|YP_001786591.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum A3
           str. Loch Maree]
 gi|169407768|gb|ACA56179.1| pyruvate formate-lyase-activating enzyme (PFL-activatingenzyme)
           (Formate-C-acetyltransferase-activating enzyme)
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 299

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 13/89 (14%)

Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY------ 326
             ++N   +     ++   N+S   A  +  +LK + A+ + L+PF+ +   +Y      
Sbjct: 210 WAIANGINVLPRIPVIPDFNNSLEHAKRIADLLKDVGARNVQLLPFHQFGEKKYNMLNKV 269

Query: 327 ------LCSDQKDIVTFSECIKRSGYSSP 349
                      +D+  + +     G    
Sbjct: 270 YALKDVKALHPEDLKNYQKIFINKGIHCF 298


>gi|294678991|ref|YP_003579606.1| MiaB family RNA modification enzyme [Rhodobacter capsulatus SB
           1003]
 gi|294477811|gb|ADE87199.1| RNA modification enzyme, MiaB family [Rhodobacter capsulatus SB
           1003]
          Length = 419

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 95/282 (33%), Gaps = 34/282 (12%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCE 165
            I    R    V  Q GC   C+FC         R++ A  ++ Q+   + L+       
Sbjct: 132 LIDGFGRHRAYVQVQNGCDHRCTFCIIPFGRGNSRSVPAGVVVEQI---KRLVDRGFAEV 188

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
            + G+ + S G  +     MG        D V + L +  D      ++ RI+   S   
Sbjct: 189 VLTGVDLTSWGADLPGAPRMG--------DLVMRILRLVPD-----LARLRISSIDSIEA 235

Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL-EMLIDACRHYPGLSNARRITF 284
            +   +       L   LH       ++++   ++  L +  I  C     L     I F
Sbjct: 236 DDNLMLAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIAFCEEARRLRPG--IVF 293

Query: 285 EYVMLKGINDSPRDALN----LIKILKGIPAKINLIPFNPWPGCEYLCSDQKD---IVTF 337
              ++ G      +       L++        +   P++   G       +     I   
Sbjct: 294 GADIIAGFPTETEEMFENSLRLVEDCGLTFLHV--FPYSARKGTPAARMPRVAGPVIKDR 351

Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379
           +  ++ +G ++ +R      + A  GQL+ +    P++ R E
Sbjct: 352 AARLRAAGDAALVRH-----LQAEVGQLREVLTEGPRLGRTE 388


>gi|260881408|ref|ZP_05404337.2| radical SAM domain protein [Mitsuokella multacida DSM 20544]
 gi|260848878|gb|EEX68885.1| radical SAM domain protein [Mitsuokella multacida DSM 20544]
          Length = 483

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 19/142 (13%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           ++C+     C+L C +C+                 Q    R+++    G   I+ ++   
Sbjct: 111 SICLMVAQDCNLRCKYCFGDGGSY----------GQ---ERAVMTPEVGKRAIDFLIESC 157

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232
             RK   +   G GEPL N   VK     A      +  K ++T++T+G +      +  
Sbjct: 158 GPRKHCEVDFFG-GEPLMNMKTVKAVTEYARQREKETGKKFKLTMTTNGMLLNDENIKWL 216

Query: 233 EEIGVMLAISL---HAVSNDLR 251
            +    L +SL     V++ +R
Sbjct: 217 NDNDFSLVLSLDGRKEVNDAMR 238


>gi|158333639|ref|YP_001514811.1| pyruvate formate-lyase activating enzyme [Acaryochloris marina
           MBIC11017]
 gi|158303880|gb|ABW25497.1| pyruvate formate-lyase activating enzyme [Acaryochloris marina
           MBIC11017]
          Length = 270

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 79/270 (29%), Gaps = 43/270 (15%)

Query: 95  RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154
              G    +ET    +       V  Q GC L C +C+       R++T      QV   
Sbjct: 29  GLTGRIHSVETCGSVDGPGLRFVVFMQ-GCPLRCLYCHNPD---CRDVTGG----QVTTV 80

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
            +L+ +              V             EPL   + V     +      L    
Sbjct: 81  EALIAEIQRYRSYMQASGGGVTVSGG--------EPLLQPEFVA---ELMRQCQALGI-- 127

Query: 215 RRITLSTSGFVPNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
               L TSGF  ++      +    L +      +  R I V    + P    +   R+ 
Sbjct: 128 -HTALDTSGF-SDLTSAQRVLQYTDLVLLDIKSYDPKRFIQVTQVSREP---TLCLARYL 182

Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNP-----WPGCEY 326
             +   +     +V++ G+ D   +   L + +  +    ++ ++PF+      W    Y
Sbjct: 183 HQI--GKPTWIRFVLVPGLTDDVENVAALAQFVAHLTNIERVEVLPFHQMGAYKWEELGY 240

Query: 327 -------LCSDQKDIVTFSECIKRSGYSSP 349
                       + +       +  G S  
Sbjct: 241 DYLLKETQPPSPELVERVRLQFREYGVSVR 270


>gi|169404759|pdb|3CAN|A Chain A, Crystal Structure Of A Domain Of Pyruvate-Formate Lyase-
           Activating Enzyme From Bacteroides Vulgatus Atcc 8482
          Length = 182

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 19/106 (17%)

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPF 318
           P E+++   R                +++G+N   ++     + L  +P     INL+P+
Sbjct: 77  PNELILKNIRRVAEAD--FPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPY 134

Query: 319 NPW--------------PGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           +                 G +     ++      + +   G  + I
Sbjct: 135 HDIGKGKHAKLGSIYNPKGYKXQTPSEEVQQQCIQILTDYGLKATI 180


>gi|46395073|gb|AAS91670.1| NifN-B [Clostridium beijerinckii]
          Length = 896

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 26/175 (14%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
           P     +  ++ S    +  + + G G+ L NFDNV+++L +  +      S+    LST
Sbjct: 543 PEEAFAKYKLVKSKMDNLKVVGIAGPGDALANFDNVRETLKLIREHD----SEVTFCLST 598

Query: 222 SGFVPNIA--RVGEEIGVMLAISLHAVSNDLRNILVPI------------NRKYPLEMLI 267
           +G +       +       + ++++A+   +   +                 +  L   +
Sbjct: 599 NGLMLPFYAQELINLGVSHVTVTMNAIDPKITAKVYKFVDYLGVTYTGEEAAQILLTNQL 658

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-N---LIPF 318
              ++        ++    VMLKGIND       + K  K + A I N   +IP 
Sbjct: 659 SGIKYLADRGIMVKVNI--VMLKGINDH--HIEEVTKKAKELGAGITNIMQMIPV 709


>gi|15895547|ref|NP_348896.1| Heme biosynthesis (nirJ-2) family protein [Clostridium
           acetobutylicum ATCC 824]
 gi|15025284|gb|AAK80236.1|AE007729_3 Heme biosynthesis (nirJ-2) family protein [Clostridium
           acetobutylicum ATCC 824]
 gi|325509695|gb|ADZ21331.1| Heme biosynthesis (nirJ-2) family protein [Clostridium
           acetobutylicum EA 2018]
          Length = 454

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 21/195 (10%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            LC++    C+L C +C+    +                 R ++      + I+ ++  S
Sbjct: 96  ALCLNIAHDCNLKCKYCFADEGEYKGC-------------REIMSPEVAKKSIDFVIKHS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231
             RK   + + G GEPL  FD +K+ +  A           R T++T+  + N   +   
Sbjct: 143 GPRKNIEVDLFG-GEPLMAFDTIKQVVEYAKKEEKKYNKNIRFTMTTNATLLNDEIMDYL 201

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVML 289
                 ++L+       ND   +       +  + ++   +      +  +         
Sbjct: 202 DKNMGNIILSFDGRKEVNDKVRVRADGTGSH--DAILKNIKKMVARRDKSKQYYVRGTFT 259

Query: 290 KGINDSPRDALNLIK 304
           +   D   D   +  
Sbjct: 260 RNNTDFFEDVKYIAD 274


>gi|330444985|ref|ZP_08308639.1| kamA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493103|dbj|GAA03136.1| kamA family protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 340

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 67/221 (30%), Gaps = 46/221 (20%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
                   EI  +     +R  L V    GC++ C +C        R+    +       
Sbjct: 92  DPLEEQQNEIPGLLHKYHNRVLLIVKG--GCAVNCRYC------FRRHFPYSD------- 136

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                 +       +  +         N V++  G+PL             +    L + 
Sbjct: 137 ------NKGNKRQWQQSLEYIAAHPEINEVILSGGDPL------------MAKDHELQW- 177

Query: 214 KRRITLSTSGFVPNIARVGEE------IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
                +     +P+I R+         I   +  +L  +  + R   + +        + 
Sbjct: 178 ----LIEHIAAIPHIKRLRIHSRLPVVIPNRITDALCQILTETRLQTILVTHINHANEID 233

Query: 268 DACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKIL 306
           DA +          +T   + V+LKG+NDS     +L + L
Sbjct: 234 DALKTAMQKLKQANVTLLNQGVLLKGVNDSVAALTDLSETL 274


>gi|226323711|ref|ZP_03799229.1| hypothetical protein COPCOM_01486 [Coprococcus comes ATCC 27758]
 gi|225207895|gb|EEG90249.1| hypothetical protein COPCOM_01486 [Coprococcus comes ATCC 27758]
          Length = 247

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 78/249 (31%), Gaps = 62/249 (24%)

Query: 123 GCSLTCSFCY-------TGTQKLV-RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           GC L C FC+       T       R  +A+E+L Q L  R+   +  G           
Sbjct: 30  GCPLRCQFCHNPDTWNMTDKNGATWR--SADELLAQALRYRTYWKNGGG----------- 76

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIA 229
                  I + G GEPL   D +   L +   +          T+ T+G       P  +
Sbjct: 77  -------ITVSG-GEPLLQIDFL---LDLFKKAKAKGI---HTTIDTAGGPFTREEPFFS 122

Query: 230 RVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
           +  E +     L + +  +       L     K  +  +I            + +   +V
Sbjct: 123 KFQELMQYTDLLLVDIKHIDEKSHKELTGKTNK-NILDMIRFLSDI-----KKPVWIRHV 176

Query: 288 MLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKD 333
           ++   +D       L   ++ +    ++ ++P++     ++                ++ 
Sbjct: 177 LVPERSDYDEYLNRLNDFIQTLDNVERVEILPYHTLGAYKWKELGLDYPLEGINPPSRER 236

Query: 334 IVTFSECIK 342
           +    + + 
Sbjct: 237 VENAKKILH 245


>gi|229083745|ref|ZP_04216065.1| hypothetical protein bcere0022_4110 [Bacillus cereus Rock3-44]
 gi|228699549|gb|EEL52214.1| hypothetical protein bcere0022_4110 [Bacillus cereus Rock3-44]
          Length = 243

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 78/243 (32%), Gaps = 50/243 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N    EI       +                +P +      I
Sbjct: 28  GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234
            + G GEPL   D + +      +      S    T+ +SG        F   +  + + 
Sbjct: 74  TVSG-GEPLLQLDFLIELFKKCKE------SGIHTTIDSSGGCYSEEPEFQRKLDILMDY 126

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             ++L + L  +       L         E ++   R+       + I   +V++ G+ D
Sbjct: 127 TDLVL-LDLKHIDPKKHRKLTGKTN----EHILQFARYLSDK--QKPIWVRHVLVPGVTD 179

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340
           +  D   L   ++ +    K+ ++P++          G +Y         +K++      
Sbjct: 180 NEEDLQGLSNFIQSLSNVKKVEVLPYHKLGVYKWEALGHKYPLEGVEPPTEKNVQNAKNI 239

Query: 341 IKR 343
           ++ 
Sbjct: 240 LQA 242


>gi|187931527|ref|YP_001891511.1| aminomutase [Francisella tularensis subsp. mediasiatica FSC147]
 gi|187712436|gb|ACD30733.1| aminomutase [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 328

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 56/262 (21%)

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LL Q       E++D+  S D                  ++  +      R  + + +Q 
Sbjct: 62  LLKQVLPTADEEVIDQAYSSD----------PLDEKNYNKVPGLLHKYHGR--VLLIAQT 109

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
            C++ C +C+        N+                   PG +D           +    
Sbjct: 110 SCAVHCRYCFRKEFDYKENI-------------------PGRKDWLQAFEYIANDQSIEE 150

Query: 183 VMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGFVPNIARVGEE-IG 236
           V++  G+PL N D + +     +   S    L   S+  + L        +  + E  + 
Sbjct: 151 VILSGGDPLLNNDEILEFFIENIQRISHIKRLRIHSRIPVVLPERMTTKLLKILSEHRLD 210

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            +L I ++  +       +  N    L+ +           +   I  +  +LK IND  
Sbjct: 211 TVLVIHVNHPNE------LDGNVSKVLKEI---------HKHGIIILNQSTLLKDINDDA 255

Query: 297 RDALNLIKILKGIPAKINLIPF 318
                L   L  I AK+  IP+
Sbjct: 256 NVLYALSTKL--INAKV--IPY 273


>gi|171184540|ref|YP_001793459.1| molybdenum cofactor biosynthesis protein A [Thermoproteus
           neutrophilus V24Sta]
 gi|170933752|gb|ACB39013.1| molybdenum cofactor biosynthesis protein A [Thermoproteus
           neutrophilus V24Sta]
          Length = 325

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 39/194 (20%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+ +C FC+   Q   R                  G +   ED            +S+  
Sbjct: 21  CNYSCIFCHFEGQARRR------------------GVYLTAEDYGFATSVFRKVGVSDFK 62

Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRR--ITLSTSGFV--PNIARVGEEIGV 237
           + G GEPL   + D V             + +K    +TL+T+G +     A++      
Sbjct: 63  ITG-GEPLLRRDIDAVV-----------YNIAKTGGAVTLTTNGLLLERWAAKLAAAGLQ 110

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            + +S+H+    + +  V       L+ ++   R     S    +    V+L+G+N    
Sbjct: 111 RVNVSVHSTDPGMYSK-VTGAPPAALKAVLRGLRE--ARSLGISLKINVVVLRGVNTDRD 167

Query: 298 DALNLIKILKGIPA 311
               L+K+   + A
Sbjct: 168 SVKELVKLAASLDA 181


>gi|57340042|gb|AAW50008.1| hypothetical protein FTT0750 [synthetic construct]
          Length = 363

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 56/262 (21%)

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LL Q       E++D+  S D                  ++  +      R  + + +Q 
Sbjct: 88  LLKQVLPTADEEVIDQAYSSD----------PLDEKNYNKVPGLLHKYHGR--VLLIAQT 135

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
            C++ C +C+        N+                   PG +D           +    
Sbjct: 136 SCAVHCRYCFRKEFDYKENI-------------------PGRKDWLQAFEYIANDQSIEE 176

Query: 183 VMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGFVPNIARVGEE-IG 236
           V++  G+PL N D + +     +   S    L   S+  + L        +  + E  + 
Sbjct: 177 VILSGGDPLLNNDEILEFFIENIQRISHIKRLRIHSRIPVVLPERITTKLLKILSEHRLD 236

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            +L I ++  +       +  N    L+ +           +   I  +  +LK IND  
Sbjct: 237 TVLVIHVNHPNE------LDGNVSKVLKEI---------HKHGIIILNQSTLLKDINDDA 281

Query: 297 RDALNLIKILKGIPAKINLIPF 318
                L   L  I AK+  IP+
Sbjct: 282 NVLYALSTKL--INAKV--IPY 299


>gi|284162243|ref|YP_003400866.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
 gi|284012240|gb|ADB58193.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
          Length = 423

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG-TQKLVRNLTAEEILLQ 150
              R      EI  V    +      VS   GC+  CSFC T   +  +R+   E I+ +
Sbjct: 115 LIDRTDVDKSEISCVKRRLRENAIAIVSIAEGCTGRCSFCATRFARGRLRSFKFESIVDE 174

Query: 151 VLL-ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189
           V     +   +        G      GR +   ++  + E
Sbjct: 175 VRKCVENGFKEIQITSQDTGAYGLDKGRYMLPDLLRAISE 214


>gi|150003986|ref|YP_001298730.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC
           8482]
 gi|149932410|gb|ABR39108.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC
           8482]
          Length = 302

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 19/106 (17%)

Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPF 318
           P E+++   R                +++G+N   ++     + L  +P     INL+P+
Sbjct: 197 PNELILKNIRRVAEAD--FPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPY 254

Query: 319 NPW--------------PGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           +                 G +     ++      + +   G  + I
Sbjct: 255 HDIGKGKHAKLGSIYNPKGYKMQTPSEEVQQQCIQILTDYGLKATI 300


>gi|323487508|ref|ZP_08092802.1| pyruvate-formate lyase-activating enzyme [Clostridium symbiosum
           WAL-14163]
 gi|323694439|ref|ZP_08108610.1| pyruvate-formate lyase-activating enzyme [Clostridium symbiosum
           WAL-14673]
 gi|323399190|gb|EGA91594.1| pyruvate-formate lyase-activating enzyme [Clostridium symbiosum
           WAL-14163]
 gi|323501520|gb|EGB17411.1| pyruvate-formate lyase-activating enzyme [Clostridium symbiosum
           WAL-14673]
          Length = 280

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 30/198 (15%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+  C FC      +       EI+  +L    L        +   M    V R    I
Sbjct: 69  GCNFACPFCQNHEISMAG---EREIIDGLLPIYHL-----SPGEAVKMAAEYVNRGNIGI 120

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VMLA 240
                 EPL N++ V+   +I +  MGL     +  + T+G V  +  + E +       
Sbjct: 121 AYT-YNEPLINYEYVRD-CAIPAREMGL-----KNVVITNGSVS-LEVLDEVLPWLDAFN 172

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           I L   +++   ++           L D  R     +    +    +++ G+ND+ R+  
Sbjct: 173 IDLKGFTDNFYRMVH--------GELEDVKRFIVRAAGKSHVEITTLIIPGLNDTEREIE 224

Query: 301 NLIKIL----KGIPAKIN 314
            + + +    + IP  +N
Sbjct: 225 EMAEWIASVRRDIPLHLN 242


>gi|210613376|ref|ZP_03289696.1| hypothetical protein CLONEX_01903 [Clostridium nexile DSM 1787]
 gi|210151218|gb|EEA82226.1| hypothetical protein CLONEX_01903 [Clostridium nexile DSM 1787]
          Length = 250

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 63/210 (30%), Gaps = 29/210 (13%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E         +        E +EG            +
Sbjct: 28  GCPMRCLYCH--------NPDTWE--------PNKGTQMTVDEVLEGFYSNMPFYHNGGV 71

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
            + G GEP+   D + +  +          +  S          F+  +  + E    ++
Sbjct: 72  TVTG-GEPMMQMDFLIELFTKLHKDGIHTCIDSSGIMFQPDNETFMNKLDTLLEVTD-LI 129

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            + +  ++      L   +        I A   Y    +   +   +V++ GI       
Sbjct: 130 MLDIKHINPQKHKELTAHSN-----ERILAFAKYLDEKH-IPVWIRHVVVPGITLYKEYL 183

Query: 300 LNLIKILKGI-PAK-INLIPFNPWPGCEYL 327
             L   L  +     ++++P++     +Y 
Sbjct: 184 EELGHFLGTLNNVHALDVLPYHSMGKVKYE 213


>gi|328947666|ref|YP_004365003.1| Radical SAM domain protein [Treponema succinifaciens DSM 2489]
 gi|328447990|gb|AEB13706.1| Radical SAM domain protein [Treponema succinifaciens DSM 2489]
          Length = 466

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 31/238 (13%)

Query: 124 CSLTCSFCYTG------TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           C+L C +C+ G        K  +    +EI                    +  + P    
Sbjct: 99  CNLACKYCFLGNNNKDKRIKFHKENMTKEIAE----------KGVAYFVKQLELQPLDES 148

Query: 178 KISNIVMMGMGEPLCNFD----NVKKSLSIA-SDSMGLSFSKRRITLSTSGFVPNIARV- 231
           +  NI+  G GEPL NF+     V K   +  S  +  +      ++ T+G +    R+ 
Sbjct: 149 RKPNIIFYG-GEPLINFEILDFVVCKFEELKESHPVLKNI---EYSIVTNGLLLTEERLR 204

Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
              ++ V +AIS+         + V          +I         S    ++    + +
Sbjct: 205 RLHQLKVAIAISIDGCDEKANQMRVDTAGNTVFNKIIKTLD--LAKSIEIPVSLSITLTE 262

Query: 291 GINDSPRDALNLIKI--LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346
               +    L LIK   +KG+   I +   N      Y  +    I+   + +++ G 
Sbjct: 263 ESIKNKDAMLELIKKYDIKGLGFNIMMSDSNTKLPESYNVAAANFIIDMFKELRKLGI 320


>gi|197118465|ref|YP_002138892.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
 gi|197087825|gb|ACH39096.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter bemidjiensis Bem]
          Length = 285

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 77/232 (33%), Gaps = 32/232 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C +C        R+  A E     + +R L  D       E M  P  G  I  I 
Sbjct: 35  CNIKCGYCT------RRHDCANE-SRPGVTSRLLSPDEAIVRVREVMASPITGPIIKVIG 87

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241
           + G G+PL N +    +           F +    LST+G      +  + E     L +
Sbjct: 88  IAGPGDPLFN-EETFDTFRYVDRE----FPQLIKCLSTNGLLLPDKMPVLKEIGLHSLTV 142

Query: 242 SLHAVSNDLRNILVPI----NRKYPLEMLIDACRH------YPGLSNARRITFEYVMLKG 291
           +L+A+   +   +         KY  E   +                   I    V++ G
Sbjct: 143 TLNALDPKVGGKIYSHVFYKGTKYTGEEGAEILVRNQLEGIRQAAELGLTIKINTVLIPG 202

Query: 292 INDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTFSE 339
           +ND       + K +K + A + N++P    P  ++          +    +
Sbjct: 203 VND--EQIPLISKKVKELGAFVMNIMPL--IPQADFAHIEPPSADRLDALRQ 250


>gi|20094388|ref|NP_614235.1| pyruvate-formate lyase-activating enzyme [Methanopyrus kandleri
           AV19]
 gi|19887462|gb|AAM02165.1| Pyruvate-formate lyase-activating enzyme [Methanopyrus kandleri
           AV19]
          Length = 346

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 77/233 (33%), Gaps = 40/233 (17%)

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+  C           R+    +I      +++   + P  E     ++ +  R    
Sbjct: 91  VGCNFRC-----------RHCQNWQI------SQAGPEEVPLEEWPPERIVGAAKRTGCE 133

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVML 239
            V     EP+   +   ++   A    GL          T+GF        +GE +    
Sbjct: 134 SVAFTYNEPIIGLEYTLETFE-ACREEGLGC-----VYVTNGFATRRTAKILGEVLDAAN 187

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
                   +  R+    + + + L+ ++  C+ +        +    +++ G NDS  +A
Sbjct: 188 VDLKAFTEDFYRD----VAKAW-LKPVLRTCKIW--KDMGVHVELTTLVIPGYNDSEEEA 240

Query: 300 LNLIKILK-----GIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKRSGY 346
             + + ++       P  ++   F+P     +   +  + I  F E     G 
Sbjct: 241 RRIARWIRKELGPDTPWHVS--RFHPDYRMLDVPPTPVETIEKFVEIGYEEGL 291


>gi|330509128|ref|YP_004385556.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328929936|gb|AEB69738.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 495

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 11/155 (7%)

Query: 116 LCVSSQVGCSLTCSFC-YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           L +S    C+  C +C ++   +  R+ +      + + + +          +       
Sbjct: 101 LTLSVTEDCNFRCKYCAFSDLYEYTRSQS-----NKYMKSDTAKRAIDYYFSLLKEGARY 155

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VG 232
             ++   +   G GEPL NF+ +K  +    +  G    K R TL+T+G + +  +    
Sbjct: 156 NPKRQPALAFYG-GEPLLNFNLIKICVEHIENEYGNC--KTRYTLTTNGSLLDKEKANWL 212

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
            E    +A+SL     +   + V  N K     ++
Sbjct: 213 MEHDFSIAVSLDGPEEEHNRLRVYPNGKGTFREVM 247


>gi|238917088|ref|YP_002930605.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
 gi|238872448|gb|ACR72158.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
          Length = 446

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 24/204 (11%)

Query: 82  CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC-VSSQVGCSLTCSFCYTGT-QKLV 139
            D T  +L+    +      E E++ I +    T   +  Q GC+  CS+C     +  V
Sbjct: 122 ADKTS-YLVDINDKY----QEYESLKINQTGEHTRAYIKIQDGCNQFCSYCIIPYVRGRV 176

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199
           R+   E+I+ +V   ++L         + G+ I S G  + NI ++           + +
Sbjct: 177 RSRKPEDIVNEV---KTLAATGVKEVVLTGIHISSYGTDLENISLI----------ELIE 223

Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259
           ++        +        + T  F   IA + E+I     +SL +  +     L  +NR
Sbjct: 224 AIHEIEGIKRIRLGSLEPRIITEEFAKRIAGL-EKICPHFHLSLQSGCDKT---LKAMNR 279

Query: 260 KYPLEMLIDACRHYPGLSNARRIT 283
           KY  E   + C     +     IT
Sbjct: 280 KYNTEEYYEGCVKLREVFENPAIT 303


>gi|228477166|ref|ZP_04061804.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           salivarius SK126]
 gi|228251185|gb|EEK10356.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus
           salivarius SK126]
          Length = 266

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 72/215 (33%), Gaps = 37/215 (17%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N     +      +   +         E +       +   I
Sbjct: 35  GCKMRCQYCH--------NPDTWAM-----ESNKAVERTVEDVLDEALRFRHFWGEQGGI 81

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--------PNIARVGEE 234
            + G GE +   D V     + +++  L       TL T GF           + ++   
Sbjct: 82  TVSG-GEAMLQIDFVTA---LFTEAKKLGI---HCTLDTCGFAYRNTPEYHEVVDKLLAV 134

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             ++L + +  +  +          + P + +++  ++         +   +V++ G+ D
Sbjct: 135 TDLVL-LDIKEIDPEQ----HKFVTRQPNKNILEFAQYLSDK--QVPVWIRHVLVPGLTD 187

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
                + L + +K +    K  ++P++     ++ 
Sbjct: 188 FDEHLVKLGEFVKTLKNVDKFEILPYHTMGEFKWR 222


>gi|158335384|ref|YP_001516556.1| radical SAM domain-containing protein [Acaryochloris marina
           MBIC11017]
 gi|158305625|gb|ABW27242.1| radical SAM domain protein [Acaryochloris marina MBIC11017]
          Length = 361

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 16/131 (12%)

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPR 297
           L + L AV   +R+ ++P   + PL    +A      +    ++ T+    L    D+  
Sbjct: 226 LGMHLEAVDPQVRSQIMPGKAEVPLSHYFEAFDAAVQVFGWGQVSTYLLAGLGDSLDTLV 285

Query: 298 DA-LNLIKILKGI-PAKINLIPFNPWPGCEYLCSDQKDIVTFSE----CIKRSGYSSPIR 351
           +A   LI +  G+ P  +  +P +  P   +     + + T  +     +K++G SS   
Sbjct: 286 EASQRLIDL--GVYPFVVPFVPISSTPLANHPAPSSEFMFTLYQQVGAMLKQAGMSS--- 340

Query: 352 TPRGLDILAAC 362
                DI A C
Sbjct: 341 ----ADINAGC 347


>gi|258513425|ref|YP_003189647.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777130|gb|ACV61024.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 421

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 76/255 (29%), Gaps = 60/255 (23%)

Query: 87  KWLLRFPARCIGGPVEIETVYIP-------EKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139
           K    FP   I   + + ++             R    + +   C+  C  C +      
Sbjct: 149 KKRYEFPGNRIIEQLAVCSMNYHCLTAQNLFYERWEAGLPASPACNARCLGCIS------ 202

Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG---EPLCNFDN 196
             L   E        +S +   P   ++  +    + R    IV  G G   EPL  +  
Sbjct: 203 --LQPSECCP---SPQSRINFTPSVSELVELAAAHLSRASEAIVSGGQGCEGEPLMAYAV 257

Query: 197 VKKS---LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253
             ++   +   ++   L+ +         GF   + ++ +           A  + +R  
Sbjct: 258 WSQAIKEIRRITNRGTLNINTNG------GFTRGLDKLCD-----------AGLDSIRVS 300

Query: 254 LV------PINRKYPLEMLIDACRH--YPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           L             P++  +D  +       S    I+   ++  GI D   +   L   
Sbjct: 301 LFSARTASYRAYHCPVDYDLDDVKRSLLLAKSYGVYISLNLLVFPGITDREEEMNAL--- 357

Query: 306 LKGIPAKINLI-PFN 319
                  INLI  +N
Sbjct: 358 -------INLINEYN 365


>gi|119486797|ref|ZP_01620772.1| nitrogen fixation protein [Lyngbya sp. PCC 8106]
 gi|119456090|gb|EAW37223.1| nitrogen fixation protein [Lyngbya sp. PCC 8106]
          Length = 486

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 89/241 (36%), Gaps = 46/241 (19%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C++C         N +   ++ ++L         P     + +V+     +++ + 
Sbjct: 71  CNIQCNYCNRKYD--CANESRPGVVSELL--------SPEEAAHKVLVVAGKIPQMTVLG 120

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241
           + G G+PL N +   ++  + +D         ++ LST+G      I R+       + I
Sbjct: 121 IAGPGDPLANPEKTFRTFELIADKA----PDIKLCLSTNGLMLPDYIDRIKALNIDHVTI 176

Query: 242 SLHAVSNDLRNILVPIN----RKY-PLE----------MLIDACRHYPGLSNARRITFEY 286
           +++ V   +  ++ P      R+Y  +E            +DA R    L     +    
Sbjct: 177 TINMVDPKIGEMIYPWVHYGRRRYRGIEGVKILHERQMEGLDALREADILCKVNSV---- 232

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPG-------CEYLCSDQKDIVTFS 338
            M+ G+ND       + ++++   A + N++P    P                K++    
Sbjct: 233 -MIPGVND--EHLQEVHEVVRSKGAFLHNIMPLISAPEHGTHYGLTGQRGPTPKELKALQ 289

Query: 339 E 339
           +
Sbjct: 290 D 290


>gi|254292479|ref|YP_003058502.1| MiaB-like tRNA modifying enzyme [Hirschia baltica ATCC 49814]
 gi|254041010|gb|ACT57805.1| MiaB-like tRNA modifying enzyme [Hirschia baltica ATCC 49814]
          Length = 435

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 28/188 (14%)

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
           + R    V  Q GC   C+FC         R++ A E++ QV                + 
Sbjct: 148 EGRARAFVQVQTGCDHRCTFCIIPYGRGNSRSVPAGEVVDQV---------------RQL 192

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFV 225
           +        ++ + +   G  L N  N    V + L +A D   L  S    ++      
Sbjct: 193 VAKGHYEVVLTGVDLTSWGADLPNAPNLGNLVARILKLAPDLKQLRLS----SIDAIEID 248

Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINR-KYPLEMLIDACRHYPGLSNARRITF 284
             +  +       +A  LH       N+++   + ++  E  I+ C+          I+F
Sbjct: 249 DQLFDLIAHDK-RIAPHLHLSFQSGDNMILKRMKRRHSREDAINLCQRLRAARPE--ISF 305

Query: 285 EYVMLKGI 292
              ++ G 
Sbjct: 306 GADLIAGF 313


>gi|31790361|gb|AAP58618.1| putative 2-methylthioadenine synthetase [uncultured Acidobacteria
           bacterium]
          Length = 450

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 61/195 (31%), Gaps = 22/195 (11%)

Query: 118 VSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           +    GC   C+FC+        R+     I+ +   A+ L  +      +        G
Sbjct: 153 IKIAEGCDRPCAFCFIPQMRGHFRSRRFGSIVAE---AQQLAEEGVKELILVAQDSSRYG 209

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
             +               D +   L   S + G+ + +   T  T      +  + EE  
Sbjct: 210 EDLGKD------------DALAHLLRELSHTDGIEWVRVMYTYPTHISDGFLEVLAEEAK 257

Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               L + L   S ++  ++     +  LE LI   R       A R TF      G  D
Sbjct: 258 AVKYLDMPLQHASQNVLKLMKRGGNRASLERLIKRVRDRVP-EIAVRTTF-ITGFPGETD 315

Query: 295 SPRDALNLIKILKGI 309
              D   L+  +K +
Sbjct: 316 --EDFEELLTFVKNV 328


>gi|315611872|ref|ZP_07886791.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
           ATCC 49296]
 gi|315316050|gb|EFU64083.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis
           ATCC 49296]
          Length = 264

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 35/214 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N     +                    E +           I
Sbjct: 37  GCHMRCQYCH--------NPDTWAM-----ETNKSRERTVDDVLTEALRYRGFWGDKGGI 83

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237
            + G GE L   D +  +L   +   G+       TL T           + +  + + V
Sbjct: 84  TVSG-GEALLQIDFLI-ALFTKAKEKGI-----HCTLDTCALPFRNKPRYLEKFNKLMAV 136

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              + + +  ++ +   I+     K      I AC  Y      + +   +V++ G+ D 
Sbjct: 137 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACAQYLS-DIGKPVWIRHVLVPGLTDR 190

Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
             D + L K +K +    K  ++P++     ++ 
Sbjct: 191 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224


>gi|210616813|ref|ZP_03291237.1| hypothetical protein CLONEX_03458 [Clostridium nexile DSM 1787]
 gi|210149631|gb|EEA80640.1| hypothetical protein CLONEX_03458 [Clostridium nexile DSM 1787]
          Length = 387

 Score = 38.7 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 19/122 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C++CY G  K                    L +    + I  +V  +   +  N+ 
Sbjct: 13  CNLKCNYCYEGNDKR----------------SKTLNNQDLEKVISFLVQNNPQNETINLT 56

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAI 241
            +G GEPL N D +   + I +     S    +  ++T+G +    I ++ +E  V ++I
Sbjct: 57  FLG-GEPLLNKDAIYLCMDIINHKWSQSKELFKFHITTNGILLDKEIIKLFKENNVDVSI 115

Query: 242 SL 243
           S+
Sbjct: 116 SI 117


>gi|56707865|ref|YP_169761.1| hypothetical protein FTT_0750 [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670336|ref|YP_666893.1| hypothetical protein FTF0750 [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134301708|ref|YP_001121676.1| hypothetical protein FTW_0659 [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|224456943|ref|ZP_03665416.1| hypothetical protein FtultM_04156 [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370360|ref|ZP_04986365.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874680|ref|ZP_05247390.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604357|emb|CAG45383.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320669|emb|CAL08766.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134049485|gb|ABO46556.1| putative lysine 2,3-aminomutase, YodO family protein [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|151568603|gb|EDN34257.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840679|gb|EET19115.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159045|gb|ADA78436.1| putative lysine 2,3-aminomutase, YodO family protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 328

 Score = 38.7 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 56/262 (21%)

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LL Q       E++D+  S D                  ++  +      R  + + +Q 
Sbjct: 62  LLKQVLPTADEEVIDQAYSSD----------PLDEKNYNKVPGLLHKYHGR--VLLIAQT 109

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
            C++ C +C+        N+                   PG +D           +    
Sbjct: 110 SCAVHCRYCFRKEFDYKENI-------------------PGRKDWLQAFEYIANDQSIEE 150

Query: 183 VMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGFVPNIARVGEE-IG 236
           V++  G+PL N D + +     +   S    L   S+  + L        +  + E  + 
Sbjct: 151 VILSGGDPLLNNDEILEFFIENIQRISHIKRLRIHSRIPVVLPERITTKLLKILSEHRLD 210

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            +L I ++  +       +  N    L+ +           +   I  +  +LK IND  
Sbjct: 211 TVLVIHVNHPNE------LDGNVSKVLKEI---------HKHGIIILNQSTLLKDINDDA 255

Query: 297 RDALNLIKILKGIPAKINLIPF 318
                L   L  I AK+  IP+
Sbjct: 256 NVLYALSTKL--INAKV--IPY 273


>gi|325263807|ref|ZP_08130540.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
           D5]
 gi|324030845|gb|EGB92127.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
           D5]
          Length = 288

 Score = 38.7 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 31/182 (17%)

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240
           +   G GE    FD + ++L   +       +     + T+G  P +         +++ 
Sbjct: 118 VTFTG-GEATLQFDELLEALKRLTA------AGIHTAVETNGAHPRLQECFPYISQLIMD 170

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
             L       R   +           I+  R    L     I     ++  +NDS  D  
Sbjct: 171 CKLCDEEKHRRATSISNA------QTIENIRRAAELHPCLHIRVP--LIGKVNDSEEDIR 222

Query: 301 NLIKI---LKGIPAKINLIPFNPW-------PGCEYLCSD-----QKDIVTFSECIKRSG 345
           + ++    L+       L+ ++ +        G EY  +D     ++ +  F + I+  G
Sbjct: 223 DFLEFFQSLRDGNVTFELLSYHEFGKKKWEQCGWEYQMTDAAHVKEETVKKFRDSIRGLG 282

Query: 346 YS 347
            +
Sbjct: 283 LN 284


>gi|290955630|ref|YP_003486812.1| oxidoreductase [Streptomyces scabiei 87.22]
 gi|260645156|emb|CBG68242.1| Putative oxidoreductase [Streptomyces scabiei 87.22]
          Length = 244

 Score = 38.7 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 67/245 (27%), Gaps = 48/245 (19%)

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC L C +C                       R            E             
Sbjct: 29  AGCPLRCLYCANPD---------------TWHMRDGKETTVDEVMAEIEKYRPFLTTAGG 73

Query: 182 IVMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIG-V 237
            V +  GEPL            I   S  L        L TSGF  V     + +    V
Sbjct: 74  GVTLTGGEPLLQ----SGFTGEILRRSKELGL---HTALDTSGFLGVRATDELLDATDLV 126

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
           +L I    V+   R     +         +D             +   YV++ G  D P 
Sbjct: 127 LLDIKSFDVTTYRRLTGGELGPTLNFATRLDRL--------GVAMWIRYVLVPGWTDEPE 178

Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343
               L + + G+ A  +++++PF+     +Y             C D   I   SE  + 
Sbjct: 179 SVEGLARFVSGLGAVDRVDVLPFHKLGAAKYEALGLPFPLRDTPCPDADLIERISERFRT 238

Query: 344 SGYSS 348
            G  +
Sbjct: 239 HGVRA 243


>gi|196231514|ref|ZP_03130372.1| RNA modification enzyme, MiaB family [Chthoniobacter flavus
           Ellin428]
 gi|196224367|gb|EDY18879.1| RNA modification enzyme, MiaB family [Chthoniobacter flavus
           Ellin428]
          Length = 463

 Score = 38.7 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 93/282 (32%), Gaps = 50/282 (17%)

Query: 43  YVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE 102
           + R     + +    +E+R  L         ++ +E  S + T +               
Sbjct: 106 FHRVAEYVEQIIQRKRELRERLMDDARFSIVDVEEEAGSQE-TIR--------------- 149

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYT-GTQKLVRNLTAEEILLQV--LLARSLLG 159
            E V    + + T  VS   GC++ C+FC    T+   R+   EEI+ +V  L+AR +  
Sbjct: 150 -EHVL--TEKQATAFVSIMQGCNMHCTFCIVPSTRGAERSRRIEEIVHEVEGLVARGVKE 206

Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219
                + +         ++      + + E +   + +K+ L   +    + F       
Sbjct: 207 VTLLGQIVNLFGRHEFEKQDGKSPFVQLLEAVHAIEGLKR-LR-FTSPHPIGFRDD---- 260

Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK-------YPLEMLIDACRH 272
                V   A + + +       +H       + ++    +       + L   + A R 
Sbjct: 261 ----LVNAFAELPKLMP-----HVHLPMQSGSDRILKAMHRGYTAEKYFSLTEKLRAARP 311

Query: 273 YPGLSNARRITFEYVMLKGINDSPRDA-LNLIKILKGIPAKI 313
              ++    + F      G  D    A  +L++ +    A I
Sbjct: 312 DIAMTTDIIVGF-----PGETDEDYAATRDLVQRVGFDNAYI 348


>gi|163816144|ref|ZP_02207512.1| hypothetical protein COPEUT_02328 [Coprococcus eutactus ATCC 27759]
 gi|158448564|gb|EDP25559.1| hypothetical protein COPEUT_02328 [Coprococcus eutactus ATCC 27759]
          Length = 224

 Score = 38.7 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 28/195 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C  +C FC   T+K   N T             L    P  E++  +        I+ +V
Sbjct: 42  CPCSCVFCLRQTKKQQENNTLW-----------LKDGEPSIEEVLELFSKYDLNIINELV 90

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA------RVGEEIGV 237
             G GEPL   ++V   +    ++        ++ L+T G    I        +      
Sbjct: 91  FCGFGEPLERLEDVCAVIDSLKNTY----PNLKVRLNTIGLANLIYGRDVTPELEGRFD- 145

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            ++ISL+A   +    L     +Y +     A + +  L+          ++  +   P 
Sbjct: 146 TVSISLNAPDENEFLELTRS--RYGI-QSYAAIKDFAVLAKRYVPHVVMTVVDKV--MPE 200

Query: 298 DALNLIK-ILKGIPA 311
           D + L + I K +  
Sbjct: 201 DKIELCRQICKDLGV 215


>gi|190892073|ref|YP_001978615.1| molybdenum cofactor biosynthesis protein [Rhizobium etli CIAT 652]
 gi|226707376|sp|B3PQ08|MOAA_RHIE6 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|190697352|gb|ACE91437.1| molybdenum cofactor biosynthesis protein [Rhizobium etli CIAT 652]
          Length = 348

 Score = 38.7 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 26/186 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C       +                    D    E+++ +    + + +  I 
Sbjct: 40  CDFRCTYCMAENMTFLP-----------------KKDLLTLEELDRLCSAFIAKGVRKIR 82

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           + G GEPL    N+   +      +G    +  +T + S    +   + E     + +SL
Sbjct: 83  LTG-GEPLV-RKNIMYLVRQLGKKIGAGLDELTLTTNGSQLSRHAEELYECGVRRINVSL 140

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
             +  +    +        +   IDA +         RI    V LKG ND+     +L+
Sbjct: 141 DTLDPEKFRKITRWGDFSKVMEGIDAAQ-----KAGIRIKLNAVALKGFNDAE--IPDLL 193

Query: 304 KILKGI 309
           +   G 
Sbjct: 194 RFAHGR 199


>gi|326792964|ref|YP_004310785.1| radical SAM protein [Clostridium lentocellum DSM 5427]
 gi|326543728|gb|ADZ85587.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427]
          Length = 200

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 26/204 (12%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           I  +   +L V+    C  +C+FC              + + Q       L   P  E+I
Sbjct: 3   IIYQIENSLYVNLTNKCPCSCTFCVRID---------HDTVGQ--NDNLWLPHDPSLEEI 51

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
              +          IV  G GEPL   + V +      +      SK +I ++T+G    
Sbjct: 52  LDDLKNYNLDSYDQIVFCGYGEPLTRIETVIEVCKYIREK-----SKIKIRVNTNGLADL 106

Query: 228 I-----ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
           I     A + E     ++ISL+A + +    L     ++ +    DA   +         
Sbjct: 107 IHNKPTAELLEGYVDAISISLNAPNKE--AYLKVARPRFGI-ESFDALLKFATDCKKYIG 163

Query: 283 TFEYVMLKGI--NDSPRDALNLIK 304
           +  + ++  +   +    +  L +
Sbjct: 164 SVTFSVVDKVISKEQIEASRKLAE 187


>gi|14591390|ref|NP_143468.1| hypothetical protein PH1615 [Pyrococcus horikoshii OT3]
 gi|3258044|dbj|BAA30727.1| 420aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 420

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 78/207 (37%), Gaps = 25/207 (12%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           + ++    + V    GC+++C FC        R       L  V+    L+  F      
Sbjct: 109 LIDRGTNLIQVRGSTGCNMSCIFCSVDEGPYSR----TRKLDFVVDIDYLMKWFNLVAKE 164

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-- 225
           +G  + +         +   GEPL  +  + + +    D   +S     I++ ++G +  
Sbjct: 165 KGKGLEAH--------LDAQGEPLM-YPFIVELVQALRDHPHVSV----ISMQSNGVLLD 211

Query: 226 -PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
              +  + E     + +S+H++      +L+ I + Y L  +++             +  
Sbjct: 212 DKLVEELAEAGLDRVNLSIHSLDPKKAKMLMGI-KDYDLSHVLEMAEALVNA--GIDVLI 268

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPA 311
             V++ GIND   +A   I+  + I A
Sbjct: 269 APVIIFGIND--DEAEAFIEFARKIGA 293


>gi|288942731|ref|YP_003444971.1| nitrogenase cofactor biosynthesis protein NifB [Allochromatium
           vinosum DSM 180]
 gi|288898103|gb|ADC63939.1| nitrogenase cofactor biosynthesis protein NifB [Allochromatium
           vinosum DSM 180]
          Length = 500

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 23/157 (14%)

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML--- 239
           + G G+PL N +   ++    ++         R+ +ST+G    +  + +E+    +   
Sbjct: 110 IAGPGDPLANPERTLETFRQLAEKA----PDIRLCVSTNGL--ALPDLVDELCQYNIEHV 163

Query: 240 AISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPG------LSNARRITFEYVML 289
            I+++ V  D+   + P     NR+       +             ++    +    V++
Sbjct: 164 TITINCVDPDVGAKIYPWIFWNNRRIKGRKAAEILIRRQQEGLEKLVARGVLVKVNSVLI 223

Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325
            G+ND       + +++K   A + N++P    P   
Sbjct: 224 PGVND--EHLKEVSRVVKAKGAFLHNVMPLIAEPEHG 258


>gi|150391562|ref|YP_001321611.1| glycyl-radical activating family protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951424|gb|ABR49952.1| glycyl-radical enzyme activating protein family [Alkaliphilus
           metalliredigens QYMF]
          Length = 315

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 56/156 (35%), Gaps = 26/156 (16%)

Query: 214 KRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
                + TSG+V   N+ ++ E + + L   L  ++++           Y  + + D  +
Sbjct: 164 WIHTAIETSGYVNSENLLKLAENVDLFL-YDLKHINSEKH---YQWTGVYN-DRIFDNLK 218

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN-----LIPFNPWPGCEY 326
                     +     +LKG+ND   D   L++ ++      N     L+P++     +Y
Sbjct: 219 ELLNR--KYNVKIRMPLLKGVNDRKEDIDKLMRFIEPYKNYENFKGIDLLPYHKLGVNKY 276

Query: 327 L-----------CS-DQKDIVTFSECIKRSGYSSPI 350
                        S +++D+      I++      +
Sbjct: 277 RLLDKTYPIEGDPSLNKEDLKKIESWIEKYDLPVTV 312


>gi|291534130|emb|CBL07243.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Megamonas
           hypermegale ART12/1]
          Length = 146

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 18/130 (13%)

Query: 116 LCVSSQVGCSLTCSFCY--TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
           +C+     C+L C +C+  TG     R L  +E+               G   ++ ++  
Sbjct: 1   MCLLVAEDCNLRCKYCFAGTGDMGHDRRLMTKEV---------------GKAAVDYIIAH 45

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
           S  RK   I   G GEPL N   VK            +    ++TL+T+G + N   +  
Sbjct: 46  SGKRKHCEIDFFG-GEPLVNMPVVKYVTEYVRQKEKETGKVFKLTLTTNGVLLNDENIKW 104

Query: 234 EIGVMLAISL 243
                +++ L
Sbjct: 105 LNDNNISMVL 114


>gi|189500687|ref|YP_001960157.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium
           phaeobacteroides BS1]
 gi|189496128|gb|ACE04676.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium
           phaeobacteroides BS1]
          Length = 424

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 80/222 (36%), Gaps = 39/222 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C++C      L  N           +   +L        ++  +  S    +  I 
Sbjct: 30  CNIQCNYCNRKFDCLNEN-RPG-------VTSRVLSPHQALHYLDQALELSPNIAVVGI- 80

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241
             G G+P  N +    +L +  +       +  + ++++G   +P I  + E     + +
Sbjct: 81  -AGPGDPFANPEETMTTLRLVREKY----PEMLLCVASNGLNVLPYIEELAELKVSHVTL 135

Query: 242 SLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEYVML 289
           +++A+  ++   +    R               L+  ++A +    L          +++
Sbjct: 136 TINAIDPEIGAEIYAWVRHGKKVFRDVAGAELLLKNQLEALKKLKEL--GVTAKVNSIII 193

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
            GIND  +  + + K +  + A I    FN   G  Y  +++
Sbjct: 194 PGIND--KHVVEVAKAVSELGADI----FN---GLSYYRTEE 226


>gi|282600854|ref|ZP_05979919.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Subdoligranulum variabile
           DSM 15176]
 gi|282571154|gb|EFB76689.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Subdoligranulum variabile
           DSM 15176]
          Length = 447

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 73/212 (34%), Gaps = 26/212 (12%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVLLARSLLGDF 161
           +E + I   S     +    GC   C++C     +   R+   + IL +    R L+   
Sbjct: 144 VEEMPIRRDSGFRAWLPIMYGCDNFCTYCIVPYVRGRERSREPDAILAEF---RDLITKG 200

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
                + G  + S G+ + N +       L N      ++              +I   T
Sbjct: 201 YKEITLLGQNVNSYGKGLGNPIDFAD---LLNL---LCAV----------PGDYQIRFMT 244

Query: 222 SGFVPNIARVGEEI--GVMLAISLHAVSNDLRNILV-PINRKYPLEMLIDACRHYPGLSN 278
           S       ++ + I     +   +H       N L+  +NR Y +E  +D   +      
Sbjct: 245 SHPKDASRKLIDTIAAQPHMCKHIHLPVQSGSNRLLQQMNRHYTVEQYLDLVDYARNKIP 304

Query: 279 ARRITFEYVMLKGI-NDSPRDALNLIKILKGI 309
              +TF   ++ G   ++  D    +++++ +
Sbjct: 305 G--VTFSSDIIVGFPGETEEDFEATLELVRKV 334


>gi|168334526|ref|ZP_02692687.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 474

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 70/199 (35%), Gaps = 24/199 (12%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVLLARSLLGDF 161
           +E +    K +   CV+   GC+  C++C     +   R+   ++I  QV   ++L+ D 
Sbjct: 167 VEDLPSIRKHQFKSCVNIMYGCNNFCTYCIVPYVRGRERSREVDDIYDQV---KALVDDG 223

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
                + G  + S G+             L         L   +   GL    +RI   T
Sbjct: 224 VKEIMLLGQNVNSYGKN------------LATKPTFTDLLERLASIDGL----KRIRFMT 267

Query: 222 SGFVPNIARVGEEI--GVMLAISLHAVSNDLRNILV-PINRKYPLEMLIDACRHYPGLSN 278
           S       ++ + I     +   LH         ++  +NR Y  E  +D          
Sbjct: 268 SHPKDFSXQLIDSIAKHDNICKGLHLPIQSGSTRILQQMNRGYTREEYLDLVAKIKKAIP 327

Query: 279 ARRITFEYVM-LKGINDSP 296
           +  +T + ++   G +DS 
Sbjct: 328 SATLTTDIIVGFPGESDSD 346


>gi|304440394|ref|ZP_07400283.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371146|gb|EFM24763.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 369

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 73/224 (32%), Gaps = 64/224 (28%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C +C+   Q        +E+            DF     +E   +P       NI 
Sbjct: 17  CNLACKYCFVVQQ-------PKEMT---YKVAKDCADFYARNALEEKTVP-------NIT 59

Query: 184 MMGMGEPLCNFDN-VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV----GEEIGVM 238
             G GEP+  +D+ VK  +     + G       + ++T+G + +  ++      ++G++
Sbjct: 60  FFG-GEPMLRYDDIVKPLVEYIRKTYG----DYHLDITTNGTLLDEEKLKFFKKNDVGIL 114

Query: 239 LAISLHAVSNDL----------------------------RNILVPINRKYPLEMLIDAC 270
           L+I     + DL                            R  L P N +Y  +  I A 
Sbjct: 115 LSIDGDRKTQDLLRVKHDGSGSFDDVDVKTYLKYNPYGTFRATLDPRNVRYMFDNYIWAK 174

Query: 271 R-HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
              Y   +    +   +        +  D   L + L  I   I
Sbjct: 175 DIGYKSCTMIINVFATW--------TEEDYRELARNLNKIMTYI 210


>gi|182417534|ref|ZP_02948861.1| pyruvate formate-lyase 2-activating enzyme [Clostridium butyricum
           5521]
 gi|237665714|ref|ZP_04525702.1| glycyl-radical enzyme activating protein family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378703|gb|EDT76230.1| pyruvate formate-lyase 2-activating enzyme [Clostridium butyricum
           5521]
 gi|237658661|gb|EEP56213.1| glycyl-radical enzyme activating protein family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 298

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 22/122 (18%)

Query: 214 KRRITLSTSGFVPN--IARVGEEIGVMLAISLHAVSND------LRNILVPINRKYPLEM 265
           K  + + T+G++ +    ++   + ++L    H  SN       + N L+  N K+ ++ 
Sbjct: 154 KLHVAIETTGYIKSEIFQKLASMLDLLLFDVKHYDSNQHYLGTNVHNELIIENLKWAIKN 213

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGC 324
            I+     P             ++   N S  DA  L K+L  + AK + L+PF+ +   
Sbjct: 214 NIEVLPRIP-------------VIPDFNSSLDDAEGLSKLLIDVGAKRVQLLPFHQFGEK 260

Query: 325 EY 326
           +Y
Sbjct: 261 KY 262


>gi|209542310|ref|YP_002274539.1| molybdenum cofactor biosynthesis protein A [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529987|gb|ACI49924.1| molybdenum cofactor biosynthesis protein A [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 338

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 75/213 (35%), Gaps = 31/213 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C +C +        L   EIL                E++E +    +   ++ I 
Sbjct: 24  CDMRCVYCMSEAMSF---LPKAEILS--------------FEEMERLCAAFIRNGVTRIR 66

Query: 184 MMGMGEPL--CNFDNVKKSLSI---ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           + G GEPL   + D    +L      +D  G    +  +T + S    +   +       
Sbjct: 67  VTG-GEPLVRRDIDGFFAALGTWLHRTDGDG-HLDELTLTTNGSHLATHADALARAGVQR 124

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           + ISL ++ ++    +    R+  LE  ++  R     +    I    V + G+ND   D
Sbjct: 125 VNISLDSLDSERFQRI---TRRGRLEQTLEGIR--AARAAGLAIRINTVAMAGVNDDEFD 179

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
              L+     I A + LI   P        SD+
Sbjct: 180 T--LLAWCGEIGADLCLIETMPMGDTGEDRSDR 210


>gi|206576626|ref|YP_002237548.1| nitrogenase cofactor biosynthesis protein NifB [Klebsiella
           pneumoniae 342]
 gi|206565684|gb|ACI07460.1| nitrogenase cofactor biosynthesis protein NifB [Klebsiella
           pneumoniae 342]
          Length = 468

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 23/179 (12%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
           P    ++   +     ++S + + G G+PL N     ++L +  D         ++ LST
Sbjct: 82  PEQAVLKVRQVAQAIPQLSVVGIAGPGDPLANMTRTFRTLELVRD----QLPDLKLCLST 137

Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYP--------LEMLI 267
           +G      + R+ E     + ++++ +  D+   +         +Y         +   +
Sbjct: 138 NGLMLPDAVERLLEVGVDHVTVTINTLDADIAGQIYAWLWLDGERYRGREAGEILIARQL 197

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325
           +  R          +    V++ GIND       + + L+   A I N++P    P   
Sbjct: 198 EGVRRLTAA--GVLVKINSVLIPGINDGG--MAEVGRRLRESGAFIHNIMPLIARPEHG 252


>gi|115525108|ref|YP_782019.1| pyruvate formate-lyase activating enzyme [Rhodopseudomonas
           palustris BisA53]
 gi|115519055|gb|ABJ07039.1| pyruvate formate-lyase activating enzyme [Rhodopseudomonas
           palustris BisA53]
          Length = 269

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 65/242 (26%), Gaps = 40/242 (16%)

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GC L C +C+                                   +     +       
Sbjct: 54  AGCLLRCQYCHNPDS---------------WHMHQGKPTNSREVLRDIATYTNFIAHAHG 98

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
            V +  GEPL   +    ++      MGL        L T+GF+ N     ++  +    
Sbjct: 99  GVTLSGGEPLVQPE-FAHAILRGCKEMGL-----HTALDTAGFLGN---HADDYLLADVD 149

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
            +                   L+  +D  R    LS    +   YV++ G+ D   +   
Sbjct: 150 LVLLDIKAFSEETYHALTGVALQPTLDFARRLAALSK--PVWIRYVLVPGLTDKFDEIEG 207

Query: 302 LIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGYS 347
           L    + +    +++++PF+     ++                 + +       +  G  
Sbjct: 208 LAAFARELGNIERVDVLPFHKLGEFKWAEVGVPYQLAETEPPSDELLDRTRSVFRSHGLV 267

Query: 348 SP 349
             
Sbjct: 268 VT 269


>gi|322387090|ref|ZP_08060701.1| pyruvate formate-lyase activating enzyme [Streptococcus infantis
           ATCC 700779]
 gi|321142077|gb|EFX37571.1| pyruvate formate-lyase activating enzyme [Streptococcus infantis
           ATCC 700779]
          Length = 264

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 43/218 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +       R  T +++L + L  R   GD  G              
Sbjct: 37  GCQMRCQYCHNPDTWAMETNKSRVRTVDDVLEEALRYRGFWGDKGG-------------- 82

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVG 232
               I + G GE L   D +  +L   +   G+       TL T           + +  
Sbjct: 83  ----ITVSG-GEALLQIDFLI-ALFTKAKEKGI-----HCTLDTCALPFRNKPRYLEKFN 131

Query: 233 EEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           + + V  L +      N+ ++ +V           I AC  Y      + +   +V++ G
Sbjct: 132 KLMAVTDLVLLDIKEINEAQHKIVTSQTN----KNILACAQYLS-DIGKPVWIRHVLVPG 186

Query: 292 INDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
           + D   D + L K +K +    K  ++P++     ++ 
Sbjct: 187 LTDRDEDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224


>gi|312623340|ref|YP_004024953.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203807|gb|ADQ47134.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 197

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 27/162 (16%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+ +C FC       +RN          L +   L         E ++     +K   IV
Sbjct: 20  CTNSCIFC-------IRNTEKG------LGSEYDLWLEKDPTPEEILLEIKDPQKYDEIV 66

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-----VGEEIGVM 238
             G GEPL   D V +      +      +   + ++T+G    I +     +   +   
Sbjct: 67  FCGYGEPLIRLDVVIEVAKKLKE-----ITSVPLRVNTNGHASYIHKKNVPQLLSNLIDR 121

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
           ++ISL+A + +  N +    R +  E + D    +   S   
Sbjct: 122 ISISLNAPNKERYNEI---CRPFS-EDIYDYVIEFIKESKKY 159


>gi|219668765|ref|YP_002459200.1| (dimethylallyl)adenosine tRNA methylthiotransferase
           [Desulfitobacterium hafniense DCB-2]
 gi|219539025|gb|ACL20764.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfitobacterium
           hafniense DCB-2]
          Length = 447

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 25/210 (11%)

Query: 104 ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVLLARSLLGDFP 162
           E+V +  K +    V+   GC+  C++C     +   R+   EEIL ++   R+L+    
Sbjct: 142 ESVLLAAKGKLKAYVNISYGCNNFCTYCIVPHVRGRERSRQPEEILAEI---RALVETGC 198

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
               + G  + S G+ +               D       +  D   +     R+   TS
Sbjct: 199 REVTLLGQNVNSYGQDL---------------DRAYDFADLLKDVDSID-GLWRVRFMTS 242

Query: 223 GFVPNIARVGEEI--GVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNA 279
                  ++ E I  G  L   +H       + ++  +NRKY  E  +        +   
Sbjct: 243 HPKDLSDKLIETIAAGTHLCEHIHLPFQAGSDEILKGMNRKYTREYYLSRIAQIKAIIPQ 302

Query: 280 RRITFEYVM-LKGINDSP-RDALNLIKILK 307
             +T + ++   G  +      L LI+ +K
Sbjct: 303 VSLTTDIIVGFPGETEEDFEQTLALIRQVK 332


>gi|170755341|ref|YP_001782853.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum B1
           str. Okra]
 gi|169120553|gb|ACA44389.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum B1
           str. Okra]
          Length = 232

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 76/242 (31%), Gaps = 49/242 (20%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
           +G    IET+ + +     + V  Q GC L C +C+                       +
Sbjct: 1   MGKIHSIETMGLVDGPGIRVVVFFQ-GCQLRCVYCHNPD---------------TWDFNA 44

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS--------LSIASDSM 208
            +         + +      +++  I   G GEPL   + + K         +    D+ 
Sbjct: 45  GIEISSDEVLKKVLRYKPYFKQVGGITCSG-GEPLMQPEFLLKILKKCKNQGIHTLLDTS 103

Query: 209 GLSFSKRR-ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           G+       I       + +I  + EE  + +        N  + ++  +N+K       
Sbjct: 104 GVGIGNYEEILQYVDLVILDIKHIEEEKYISICGKNMEEFNKFKRVVNKLNKK------- 156

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCE 325
                         +   +V++ GIND+          +       K+ L+P++     +
Sbjct: 157 --------------LWIRHVVVPGINDTAEHIYKFKDYINTFNNVEKVELLPYHTLGVSK 202

Query: 326 YL 327
           Y 
Sbjct: 203 YE 204


>gi|290508666|ref|ZP_06548037.1| nitrogenase cofactor biosynthesis protein NifB [Klebsiella sp.
           1_1_55]
 gi|289778060|gb|EFD86057.1| nitrogenase cofactor biosynthesis protein NifB [Klebsiella sp.
           1_1_55]
          Length = 468

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 23/179 (12%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
           P    ++   +     ++S + + G G+PL N     ++L +  D         ++ LST
Sbjct: 82  PEQAVLKVRQVAQAIPQLSVVGIAGPGDPLANMTRTFRTLELVRD----QLPDLKLCLST 137

Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYP--------LEMLI 267
           +G      + R+ E     + ++++ +  D+   +         +Y         +   +
Sbjct: 138 NGLMLPDAVDRLLEVGVDHVTVTINTLDADIAGQIYAWLWLDGERYRGREAGEILIARQL 197

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325
           +  R          +    V++ GIND       + + L+   A I N++P    P   
Sbjct: 198 EGVRRLTAA--GVLVKINSVLIPGINDGG--MAEVGRRLRESGAFIHNIMPLIARPEHG 252


>gi|288934464|ref|YP_003438523.1| nitrogenase cofactor biosynthesis protein NifB [Klebsiella
           variicola At-22]
 gi|255761117|gb|ACU32717.1| nitrogenase cofactor biosynthesis protein NifB [Klebsiella
           variicola At-22]
          Length = 468

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 23/179 (12%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
           P    ++   +     ++S + + G G+PL N     ++L +  D         ++ LST
Sbjct: 82  PEQAVLKVRQVAQAIPQLSVVGIAGPGDPLANMTRTFRTLELVRD----QLPDLKLCLST 137

Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYP--------LEMLI 267
           +G      + R+ E     + ++++ +  D+   +         +Y         +   +
Sbjct: 138 NGLMLPDAVDRLLEVGVDHVTVTINTLDADIAGQIYAWLWLDGERYRGREAGEILIARQL 197

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325
           +  R          +    V++ GIND       + + L+   A I N++P    P   
Sbjct: 198 EGVRRLTAA--GVLVKINSVLIPGINDGG--MAEVGRRLRESGAFIHNIMPLIARPEHG 252


>gi|297545376|ref|YP_003677678.1| Radical SAM domain-containing protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843151|gb|ADH61667.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 453

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 72/243 (29%), Gaps = 40/243 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C +CY       RN             + +  +       +     +    I  I
Sbjct: 77  GCNMNCPYCYIPES-YRRNY------------QKMSYNQLEEIIDKLSKWINERGGIKRI 123

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           +  G GEPL   +     +      +     +   TL T      I +      V +++S
Sbjct: 124 IFHG-GEPLLAKEIFFPIIEKYYKEIEFGI-QTNGTLLTEEDAAFIKKH----NVHVSLS 177

Query: 243 LHAVSNDLRNILVPINRKY----PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           L A   ++ + L            +   I+    Y        IT        +N     
Sbjct: 178 LDAPLPEINDKLRYYQNGTGTFAHVRKTIEMFDDYEWQGVIVTIT-----KNNVNIIDTM 232

Query: 299 ALNLIKILKGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR----TP 353
           A  L     G+  A  N I  +      ++ S ++ I  + +          IR     P
Sbjct: 233 AEALYDW--GVRSALFNPISPSVSESTAFVPSIKELIDNYKKF-----IDVVIRLNTYQP 285

Query: 354 RGL 356
           +G 
Sbjct: 286 KGR 288


>gi|291615956|ref|YP_003518698.1| YjeK [Pantoea ananatis LMG 20103]
 gi|291150986|gb|ADD75570.1| YjeK [Pantoea ananatis LMG 20103]
          Length = 342

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 70/224 (31%), Gaps = 57/224 (25%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY------TGTQKLVRNLTAEEI 147
                    +  +    K+R  L V    GC++ C +C+         Q   RN  A   
Sbjct: 92  DPLDEQNSVVPGLLHKYKNRALLLVKG--GCAVNCRYCFRRHFPYQDNQGNKRNWQAA-- 147

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSI 203
                                 +   +   ++  I+  G G+PL   D+    +  +L  
Sbjct: 148 ----------------------LDYITAHPELDEIIFSG-GDPLMAKDHELAWLIDALGA 184

Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263
                 L     R+ +     +P   R+ E +   LA        + R  ++ +      
Sbjct: 185 IPHLKRLRI-HSRLPV----VIP--DRITEALCQTLA--------ETRLQVLMVTHINHA 229

Query: 264 EMLIDACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKI 305
             + +A            +T   + V+L+G+ND   DA  L  +
Sbjct: 230 REIDEALCDAMLRLKRADVTLLNQSVLLRGVND---DAQTLAAL 270


>gi|291523778|emb|CBK89365.1| pyruvate formate-lyase 1-activating enzyme [Eubacterium rectale DSM
           17629]
          Length = 249

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 41/239 (17%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC++ C +C+        N        +              E ++  +      K +  
Sbjct: 30  GCNMRCKYCH--------NPDTWAKCGE----NDGAKLMTPQEVLKTAMRYKAYWKQTGG 77

Query: 183 VMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEEIGVM- 238
           + +  GE L   D V +   +A +   +  L  S    T+      P   +  E +    
Sbjct: 78  ITVSGGEALLQIDFVTELFKLAKEKCVNTCLDTSGNPFTV----EEPFFGKFNELMKYTD 133

Query: 239 -LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
              + +  + ++    L     K  L+M       Y    N +++   +V++ GI    R
Sbjct: 134 LFMLDIKHIDDEEHKKLTGQTNKNILDMA-----QYLS-KNGKKMWIRHVLVPGITTDER 187

Query: 298 DALNLIKILKGIPA--KINLIPFNPWP-------GCEYL-----CSDQKDIVTFSECIK 342
               L + +  +    ++ ++P++          G  Y         ++ I    + + 
Sbjct: 188 YLKQLREFIDTLKTVDRVEVLPYHTLGVFKWKELGIPYQLEGVEPPTEEQIECAKKVLN 246


>gi|332830635|gb|EGK03241.1| nitrogenase cofactor biosynthesis protein NifB [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 420

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 22/182 (12%)

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIG 236
           IS + + G G+P  N +   +++ +A       F      LS++G    P I  + E   
Sbjct: 74  ISVVGIAGPGDPFANAEETLQTMRLAQKE----FPDLIFCLSSNGLDLAPYIDEIAEIGV 129

Query: 237 VMLAISLHAVSNDLRNILVPINRK----YPLEMLIDACRH---YPGLSNARR---ITFEY 286
             + I++++++ +    +    R     Y  E           Y       +   +    
Sbjct: 130 SHVTITVNSLNPETLAKIYRWVRYKRRVYRGEEGAKVLLEQQLYCIQKLKEKNITVKINT 189

Query: 287 VMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY---LCSDQKDIVTFSECIK 342
           V+  GIND      +L K +  + A  +N IP  P    E+       ++ +      I 
Sbjct: 190 VICPGINDHE--IEDLAKKVAELGADTMNCIPMYPTENTEFEILKEPSKEMMKDIKARIS 247

Query: 343 RS 344
           + 
Sbjct: 248 KY 249


>gi|315226604|ref|ZP_07868392.1| pyruvate formate-lyase activating enzyme [Parascardovia denticolens
           DSM 10105]
 gi|315120736|gb|EFT83868.1| pyruvate formate-lyase activating enzyme [Parascardovia denticolens
           DSM 10105]
          Length = 304

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 35/204 (17%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC L C +C    T   +  R +  E ++ +V   + L     G     G       + +
Sbjct: 89  GCPLRCQYCQNPDTWKMRDGRPVYLEAMIDKVARYKDLFQLTHGGITFSGGESMQQPKFV 148

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +                V ++       MG+        L TSGF+       +   + L
Sbjct: 149 TR---------------VFRAAK----EMGI-----HTCLDTSGFLGKNYSDRDIEDIDL 184

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            +      ++             L+  ID  +    L    +I   +V++ G+ DS  + 
Sbjct: 185 CLLDVKSGDE---ETYHKVTGGTLQPTIDFGKRLSKL--GSKIWIRFVLVPGLTDSVENV 239

Query: 300 LNLIKILKGIPA---KINLIPFNP 320
            N+ +I +        I+++PF+ 
Sbjct: 240 ENVARICEQFGNAVEHIDVLPFHQ 263


>gi|294786965|ref|ZP_06752219.1| pyruvate formate-lyase 1-activating enzyme [Parascardovia
           denticolens F0305]
 gi|294485798|gb|EFG33432.1| pyruvate formate-lyase 1-activating enzyme [Parascardovia
           denticolens F0305]
          Length = 299

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 35/204 (17%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC L C +C    T   +  R +  E ++ +V   + L     G     G       + +
Sbjct: 84  GCPLRCQYCQNPDTWKMRDGRPVYLEAMIDKVARYKDLFQLTHGGITFSGGESMQQPKFV 143

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
           +                V ++       MG+        L TSGF+       +   + L
Sbjct: 144 TR---------------VFRAAK----EMGI-----HTCLDTSGFLGKNYSDRDIEDIDL 179

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            +      ++             L+  ID  +    L    +I   +V++ G+ DS  + 
Sbjct: 180 CLLDVKSGDE---ETYHKVTGGTLQPTIDFGKRLSKL--GSKIWIRFVLVPGLTDSVENV 234

Query: 300 LNLIKILKGIPA---KINLIPFNP 320
            N+ +I +        I+++PF+ 
Sbjct: 235 ENVARICEQFGNAVEHIDVLPFHQ 258


>gi|327396208|dbj|BAK13630.1| lysine 2 3-aminomutase YjeK [Pantoea ananatis AJ13355]
          Length = 342

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 70/224 (31%), Gaps = 57/224 (25%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY------TGTQKLVRNLTAEEI 147
                    +  +    K+R  L V    GC++ C +C+         Q   RN  A   
Sbjct: 92  DPLDEQNSVVPGLLHKYKNRALLLVKG--GCAVNCRYCFRRHFPYQDNQGNKRNWQAA-- 147

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSI 203
                                 +   +   ++  I+  G G+PL   D+    +  +L  
Sbjct: 148 ----------------------LDYIAAHPELDEIIFSG-GDPLMAKDHELAWLIDALGA 184

Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263
                 L     R+ +     +P   R+ E +   LA        + R  ++ +      
Sbjct: 185 IPHLKRLRI-HSRLPV----VIP--DRITEALCQTLA--------ETRLQVLMVTHINHA 229

Query: 264 EMLIDACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKI 305
             + +A            +T   + V+L+G+ND   DA  L  +
Sbjct: 230 REIDEALCDAMLRLKRADVTLLNQSVLLRGVND---DAQTLAAL 270


>gi|195874404|ref|ZP_02701807.2| DarA [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|195628955|gb|EDX48357.1| DarA [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
          Length = 613

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 12  MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSI 70
           +  E++    LK+             +    + +  R +  M +   ++ +  L  +F  
Sbjct: 427 LSDEQMRNFDLKLLPRDESFDFLAKTLASGPFGKYARQYLEMATSAPKDFQSTLKMNFQK 486

Query: 71  IYPEIVDEKISCDGTRKWL 89
            +P I       DGT K +
Sbjct: 487 TFPNIAYPL--GDGTEKLV 503


>gi|147919729|ref|YP_686525.1| putative 2-methylthioadenine synthetase [uncultured methanogenic
           archaeon RC-I]
 gi|110621921|emb|CAJ37199.1| putative 2-methylthioadenine synthetase [uncultured methanogenic
           archaeon RC-I]
          Length = 404

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 81/260 (31%), Gaps = 32/260 (12%)

Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVLLARSLL 158
            +  E       +  T  +    GC+  CS+C     +  +R+  A +I+     AR  +
Sbjct: 103 GLRPEAGLSIAMTGRTATIKIAEGCNGQCSYCIVRLVRGRIRSTPAPDIVE---AARRAI 159

Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
            +      +      + G      +  G+  P      + +S++    +  +        
Sbjct: 160 AEGASELFLTSQDSGAYG------LDTGVRLP-----TLIRSIASLPGNFKVRIGMMN-P 207

Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLS 277
            S +  +P++  V     V      H       + ++ + ++ Y  +             
Sbjct: 208 FSIADILPDMVDVLNHPKVYRFA--HIPVQSGSDRILKLMQRPYTEQEYSAIISRLRAGV 265

Query: 278 NARRITFEYVMLKGINDSPRDALN-LIKILKGIPAKINLIPFNPWPGCE-------YLCS 329
                + +Y++     ++  D    L  +    P K+N+  F+P PG            +
Sbjct: 266 PGITFSTDYIV-GFPTETEADFRLTLEDLRTNRPLKVNITRFSPRPGTPAAAMPDVLERT 324

Query: 330 DQKDIVTFSECIKRSGYSSP 349
            ++     S  +    +   
Sbjct: 325 KKER----SRMLTALHHEVT 340


>gi|309798990|ref|ZP_07693247.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus infantis
           SK1302]
 gi|308117394|gb|EFO54813.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus infantis
           SK1302]
          Length = 264

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 43/218 (19%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +       R  T +++L + L  R   GD  G              
Sbjct: 37  GCQMRCQYCHNPDTWAMETNKSRVRTVDDVLEEALRYRGFWGDKGG-------------- 82

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVG 232
               I + G GE L   D +  +L   +   G+       TL T           + +  
Sbjct: 83  ----ITVSG-GEALLQIDFLI-ALFTKAKEKGI-----HCTLDTCALPFRNKPRYLEKFN 131

Query: 233 EEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291
           + + V  L +      N+ ++ +V           I AC  Y      + +   +V++ G
Sbjct: 132 KLMAVTDLVLLDIKEINEAQHKIVTSQTN----KNILACAQYLS-DIGKPVWIRHVLVPG 186

Query: 292 INDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
           + D   D + L K +K +    K  ++P++     ++ 
Sbjct: 187 LTDRDEDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224


>gi|298507087|gb|ADI85810.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase
           [Geobacter sulfurreducens KN400]
          Length = 293

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 71/210 (33%), Gaps = 23/210 (10%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLT-CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           IE V+ P     +L     +GCS   C+FC     K  R     E++ ++    +     
Sbjct: 5   IEPVFRPPSEARSLIFQITIGCSQNHCAFCGMYKMKRFRLKPESEVMTEIDGIPARYRPA 64

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
                +               ++  +     N   V           G   S R +   T
Sbjct: 65  VDRVFLADGDALVYPFDGLAAILDRLAAVFPNLTRV-----------GSYASPRSL---T 110

Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI-DACRHYPGLSNAR 280
           +  V  + ++ E+   +L   L +  +     L  +N+ +  E ++ +AC+         
Sbjct: 111 TKSVDELRQLREKKLRILYFGLESGDDAT---LAAVNKGFTAEEMVWEACK---AREAGM 164

Query: 281 RITFEYVM-LKGINDSPRDALNLIKILKGI 309
           +++   ++ L G + S   A    + +  +
Sbjct: 165 KLSVTAILGLAGRSRSLEHARATAEWVNRV 194


>gi|256395639|ref|YP_003117203.1| radical SAM domain-containing protein [Catenulispora acidiphila DSM
           44928]
 gi|256361865|gb|ACU75362.1| Radical SAM domain protein [Catenulispora acidiphila DSM 44928]
          Length = 418

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 58/196 (29%), Gaps = 32/196 (16%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI- 182
           C+L C +C              E+  Q    + +       E     +   +      + 
Sbjct: 48  CNLACDYC-----------YMYEMADQSWRGKPVAMTRATVEATAARITEHLEAHRDEVS 96

Query: 183 ----------VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIA 229
                      ++   E L     V ++        G+S    ++TL+T+G +     I 
Sbjct: 97  EAVISLHGGEALLAGAEGLDYAAGVFRAA----VPDGVS---AQLTLTTNGVLLTDERIL 149

Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           RV E+  + + +SL              N +   + ++         +   R+     ++
Sbjct: 150 RVLEQHDIAVTLSLDGAREAQDRHRKYANGRGSYDAVMAGAAALRAHTAPERLRNVLCVI 209

Query: 290 KGINDSPRDALNLIKI 305
              ND       L  +
Sbjct: 210 DVANDPLETYAELAAL 225


>gi|12657477|emb|CAC27790.1| NifB2 protein [Paenibacillus durus]
          Length = 458

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 87/246 (35%), Gaps = 46/246 (18%)

Query: 124 CSLTCSFCYTGTQKLVR-----NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
           C++ C++C        R     N +   ++ +VL         P   + +   + +   +
Sbjct: 42  CNIQCNYC-------NRKFDCVNESRPGVVSEVLT--------PEQAERKVKGVAAQLMQ 86

Query: 179 ISNIVMMGMGEPLCNFDNVKK-SLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEI 235
           +S + + G G+PL N D        +               LST+G     +I R+ E  
Sbjct: 87  LSVVGIAGPGDPLANADKTFDTFARVKKH-----VPDVITCLSTNGLTLYRHIDRIVELG 141

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLE-MLIDACRHYPGL---------SNARRITFE 285
              + I+++A+  D+   + P      +     +A                     +   
Sbjct: 142 IGHVTITINAIDPDVGKEIYPWVSDEGVRYEGREAAALLISRQLQGVEELAKRGILVKVN 201

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY-----LCSDQKDIVTFSE 339
            +++ GIND  +  + + K +K + A + N+ P    PG +Y          +++    E
Sbjct: 202 SILIPGIND--KHLVEVSKKVKELGATLHNVTPLIIAPGSQYEKDGRKAPRPRELNQLQE 259

Query: 340 CIKRSG 345
            +   G
Sbjct: 260 QLSEGG 265


>gi|292669432|ref|ZP_06602858.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648885|gb|EFF66857.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 342

 Score = 38.3 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           IP  +  T+ +     C+  C +C   T    R+    E   + L  R    D    E I
Sbjct: 19  IPLAAPFTVYIEQTKYCNFKCFYCIHST----RDEAGGEF--RALGHREQHMDEAFFEKI 72

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCN 193
              +       I  IV  G+GEPL N
Sbjct: 73  IRELKEFPHDGIKRIVFSGLGEPLMN 98


>gi|319938823|ref|ZP_08013187.1| pyruvate formate-lyase 3 [Streptococcus anginosus 1_2_62CV]
 gi|319811873|gb|EFW08139.1| pyruvate formate-lyase 3 [Streptococcus anginosus 1_2_62CV]
          Length = 258

 Score = 38.3 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 73/234 (31%), Gaps = 69/234 (29%)

Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           GC L C +C                    T T    +  + EEI+ +VL  R    +  G
Sbjct: 30  GCPLRCPWCANPESQKFKPEPMLDASSKKTITMGEEK--SVEEIIKEVLKDREFYEESGG 87

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
              + G  I +                        K++  A+   G+        + T+ 
Sbjct: 88  GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 123

Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           FV +  +  + +     +   L       H     ++N L+  N  Y             
Sbjct: 124 FVDH-NKFVDLLQYVDFIYTDLKHYNTINHRKVTGVKNELIIKNIHY------------- 169

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL 327
             S  + I     ++   NDS  DA     + K +   ++ L+PF+ +   +Y 
Sbjct: 170 AFSQQKTIVLRIPVIPSFNDSLEDAEQFAILFKKLSIDQVQLLPFHQFGENKYK 223


>gi|261254094|ref|ZP_05946667.1| lysine 2,3-aminomutase [Vibrio orientalis CIP 102891]
 gi|260937485|gb|EEX93474.1| lysine 2,3-aminomutase [Vibrio orientalis CIP 102891]
          Length = 340

 Score = 38.3 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 66/213 (30%), Gaps = 46/213 (21%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
                    I  +     +R  + V    GC++ C +C        R+   +E       
Sbjct: 92  DPLEEQNNSIPGLLHKYHNRALMIVKG--GCAINCRYC------FRRHFPYDE------- 136

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                         + +       +I  +++ G G+PL             +    L++ 
Sbjct: 137 -----NKSSKSVWQQSLDYIQQHPEIDEVILSG-GDPL------------MAKDEELNW- 177

Query: 214 KRRITLSTSGFVPNIARVGEE------IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
                ++    +P+I R+         I   +  +L  +  + R   + +      + + 
Sbjct: 178 ----LVNHIADIPHIKRLRIHSRLPVVIPARITPALANLLENTRLQTILVTHINHAQEIH 233

Query: 268 DACRHYPGLSNARRITF--EYVMLKGINDSPRD 298
              R          +T   + VMLKG+NDS  D
Sbjct: 234 QELRDSLTTLKRAGVTLLNQGVMLKGVNDSIDD 266


>gi|322419288|ref|YP_004198511.1| lysine 2,3-aminomutase YodO family protein [Geobacter sp. M18]
 gi|320125675|gb|ADW13235.1| lysine 2,3-aminomutase YodO family protein [Geobacter sp. M18]
          Length = 343

 Score = 38.3 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 65/211 (30%), Gaps = 42/211 (19%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
                 R    VS+   C++ C FC                    +  R +         
Sbjct: 88  IHRYPDRVVFLVSTA--CAVYCRFC--------------------MRKRGVGCQGMSPAP 125

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLC----NFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
           ++  V     +     V++  G+PL       D +  +L        +     R+ ++  
Sbjct: 126 VDQSVAYIASKPQIRDVILSGGDPLLLSDDRLDGILTALRRIPHVEIIRIGT-RVPVT-- 182

Query: 223 GFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
                I  ++   +     + L+   N  R I          E    AC          +
Sbjct: 183 -LPERITVKLARLLKRHQPLYLNTHFNHPREI---------TEQSARACARLADA--GIQ 230

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
           +  + V+LKG+ND P+    L++ L  I  +
Sbjct: 231 LGNQSVLLKGVNDDPQVMRELMQRLLAIRVR 261


>gi|330506877|ref|YP_004383305.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
 gi|328927685|gb|AEB67487.1| radical SAM domain protein [Methanosaeta concilii GP-6]
          Length = 364

 Score = 38.3 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 25/147 (17%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           +PE+S G L +S    C+L CS+CY       R               + +G       I
Sbjct: 1   MPEESPGLLALSVTSDCNLRCSYCY-AHGGESR---------------ASMGWVTARRAI 44

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
           + M     G KI      G GEPL N   +++++    D MGL    +  T +T      
Sbjct: 45  DVMAECFDGFKIQ---FTG-GEPLLNLGLIERAVDYL-DEMGLQVPCQVQTNATLITSDV 99

Query: 228 IARVGEEIGVMLAISLHAV---SNDLR 251
             R+ + + + + +SL      ++ +R
Sbjct: 100 AGRLND-LKIGIGVSLDGPPSVNDRIR 125


>gi|222102846|ref|YP_002539885.1| Biotin synthase-related enzyme [Agrobacterium vitis S4]
 gi|221739447|gb|ACM40180.1| Biotin synthase-related enzyme [Agrobacterium vitis S4]
          Length = 323

 Score = 38.3 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 56/141 (39%), Gaps = 16/141 (11%)

Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           R+ +     L + L  V+ ++R  ++P   +  +E  + + +    +    +++  Y ML
Sbjct: 175 RMKDAGVDALGMHLEVVTPEIRARIMPGKAQVGIEKYMASFKAAVEVFGRGQVS-TY-ML 232

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSECIK 342
            G+ D+    L++ + L  I     ++PF P  G             + +     S+ + 
Sbjct: 233 AGLGDTREAILDICERLVAIGVYPFVVPFVPISGTPLESHPAPKPDFMHSILGPLSKMLV 292

Query: 343 RSGYSSPIRTPRGLDILAACG 363
            SG  +        DI A CG
Sbjct: 293 ESGLKAV-------DIKAGCG 306


>gi|24213374|ref|NP_710855.1| oxidoreductase [Leptospira interrogans serovar Lai str. 56601]
 gi|45658752|ref|YP_002838.1| hypothetical protein LIC12923 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194126|gb|AAN47873.1| oxidoreductase [Leptospira interrogans serovar Lai str. 56601]
 gi|45601996|gb|AAS71475.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 514

 Score = 38.3 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 33/185 (17%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L+CSFC        R   + +        +      P   +               +
Sbjct: 241 GCDLSCSFCP-------RQFNSND--------QDGKFLSPEFLESLLRQQEESFSNEYTV 285

Query: 183 VMMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP--------NIARVG 232
              G+GEPL   NF  +   L+    S  L    + + + T+ +          NI    
Sbjct: 286 CFGGLGEPLLHPNFKELI--LTALKSSSHL---MQELMIETAFYTDPNIILDFLNILDFA 340

Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
            +  +   I+L   + +    L   N+   LE ++   +    +    RI  +++ ++  
Sbjct: 341 HKEKITWIINLTTRNPEKYATLYGKNK---LEKVLSNIKELEKVFPKNRIYLQFLKIQEA 397

Query: 293 NDSPR 297
            D   
Sbjct: 398 EDEVE 402


>gi|288932099|ref|YP_003436159.1| radical SAM protein [Ferroglobus placidus DSM 10642]
 gi|288894347|gb|ADC65884.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
          Length = 288

 Score = 38.3 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 70/208 (33%), Gaps = 22/208 (10%)

Query: 107 YIPEKSRGTLCVSSQVGCSLT-CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165
           + P     ++ + + +GCS   C+FC +   K  R  + EEI   +L+ +    D     
Sbjct: 8   FRPPSEAKSVILQATIGCSHNKCTFCGSYKMKKFREKSLEEIWRDLLILKEFYPDAKRMF 67

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
             +G        K+  I+ M           V  +L           S     +      
Sbjct: 68  IADGNAFCMSTEKLLKIISMA--------KKVFPNLER--------ISIYATPMDILAKS 111

Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
                +  E G+ L        +D+  +L  + +    + ++ A R    + N   ++  
Sbjct: 112 DEEISLLAESGLRLIYLGIESGDDV--VLKEVKKGATSKEILKAGRK--AIENGVTLSVT 167

Query: 286 YVM-LKGINDSPRDALNLIKILKGIPAK 312
            ++ L G   S   A N  K+L  +   
Sbjct: 168 AILGLGGRKRSEEHAENTAKLLNEMKPH 195


>gi|39998150|ref|NP_954101.1| radical SAM domain-containing protein [Geobacter sulfurreducens
           PCA]
 gi|39985096|gb|AAR36451.1| radical SAM domain protein [Geobacter sulfurreducens PCA]
          Length = 293

 Score = 38.3 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 63/208 (30%), Gaps = 19/208 (9%)

Query: 103 IETVYIPEKSRGTLCVSSQVGCSLT-CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           IE V+ P     +L     +GCS   C FC     K  R     E++ ++    +     
Sbjct: 5   IEPVFRPPSEARSLIFQITIGCSQNHCVFCGMYKMKRFRLKPEAEVMAEIDGIPARYRPA 64

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221
                +               ++  +     N   V           G   S R +   T
Sbjct: 65  VDRVFLADGDALVYPFDGLAAILDRLAAVFPNLTRV-----------GSYASPRSL---T 110

Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
           +  V  +  + E+   +L   L +  +     L  +N+ +  E ++              
Sbjct: 111 TKNVEELRHLREKKLRILYFGLESGDDAT---LAAVNKGFTAEEMVREACKAREAGMKLS 167

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGI 309
           +T   + L G + S   A    + +  +
Sbjct: 168 VT-AILGLAGRSRSLEHARATAEWVNRV 194


>gi|153009561|ref|YP_001370776.1| molybdenum cofactor biosynthesis protein A [Ochrobactrum anthropi
           ATCC 49188]
 gi|151561449|gb|ABS14947.1| molybdenum cofactor biosynthesis protein A [Ochrobactrum anthropi
           ATCC 49188]
          Length = 345

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 75/214 (35%), Gaps = 37/214 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C       +                    D    E+++ +    + + +  + 
Sbjct: 36  CDFRCTYCMAEHMTFLP-----------------KKDLLTLEELDRLCTAFIDKGVRKLR 78

Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG----V 237
           + G GEPL   N  ++ + LS    S  L      +TL+T+G    ++R  +E+      
Sbjct: 79  LTG-GEPLVRKNIMHLIRQLSRHLKSGAL----DELTLTTNG--SQLSRFADELAECGIR 131

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            + +SL  +  +  + +        L  +++            R+    V LK  ND   
Sbjct: 132 RINVSLDTLDPEKFHQITRWG---DLPRVLEGIE--AAQRAGIRVKINAVALKDFNDHE- 185

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
               LI+   G    + LI   P    E+  +DQ
Sbjct: 186 -IPELIRWAHGRGMDMTLIETMPMGEIEFDRTDQ 218


>gi|320352619|ref|YP_004193958.1| Radical SAM domain-containing protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320121121|gb|ADW16667.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 332

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 79/238 (33%), Gaps = 47/238 (19%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI- 182
           C+L C +C  G        TA      V + +      P     E   + +  R+++ + 
Sbjct: 27  CNLNCIYCEVGK-------TA------VPVGQRGTYADPAGIAAEIDAVCADSRRMAEVD 73

Query: 183 --VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
              +   GEP              +   GL    R I   T+  V  +          + 
Sbjct: 74  VLTVTAKGEP--------------TLERGLGGILRHIKQKTTKPVAVLTNGTTLTDPEVQ 119

Query: 241 ISLHAVS------NDLRNILVPINRK----YPLEMLIDACRHYPGLSNARRITFEYVMLK 290
             L A        +  R        +      L+ +I     +       ++  E ++++
Sbjct: 120 RDLMAADLVIPSLDAAREDSFRRVDRPIDGLALDAVIAGLTSFSHAYPG-KLWLEILLVR 178

Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPW---PGCEYLCS-DQKDIVTFSECIKRS 344
           G+ND P D   LI+ L+  P +I+ I  N     P  ++      + + T +  + ++
Sbjct: 179 GVNDRPEDIEALIEALR--PMRIDRIQLNTVVRPPAEQFALPVSSERLTTVARALHQA 234


>gi|262039026|ref|ZP_06012360.1| pyruvate formate-lyase 2-activating enzyme [Leptotrichia
           goodfellowii F0264]
 gi|261746936|gb|EEY34441.1| pyruvate formate-lyase 2-activating enzyme [Leptotrichia
           goodfellowii F0264]
          Length = 265

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 73/227 (32%), Gaps = 48/227 (21%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C         N   ++I  +V      +    G       ++     +I +I
Sbjct: 30  GCPLRCKWCS--------NPETQKIENEVFYNEKEISPITGEYPKVAKLM--TLNEIFDI 79

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           VM              K     +   G++ S   I ++    +    ++ EE       +
Sbjct: 80  VMKDE-----------KFYR--NSGGGVTLSGGEILVNVEFAIKLFEKLKEEYINTAIET 126

Query: 243 LHAVSNDLRNILVPINRK--YPLEMLIDAC-RHYPGLSN-------------ARRITFEY 286
               +      L  +     + ++ +     + Y  +SN              + I   +
Sbjct: 127 TGYGNYKEFENLAKLTDTVLFDIKHMNSQKHKEYTAVSNELILENLEKLSKWHKNIIMRF 186

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLI-----PFNPWPGCEYLC 328
            ++KG+ND   +     K LK    KINLI     P++     +Y  
Sbjct: 187 PLIKGVNDDDVNVEETAKFLK----KINLIDVDVLPYHTMGVEKYRK 229


>gi|302874950|ref|YP_003843583.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|307690432|ref|ZP_07632878.1| Radical SAM domain-containing protein [Clostridium cellulovorans
           743B]
 gi|302577807|gb|ADL51819.1| Radical SAM domain protein [Clostridium cellulovorans 743B]
          Length = 454

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 21/200 (10%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
           E     LC++    C+L C +C+    +   +     I                 + +E 
Sbjct: 91  EDYVKALCLNIIHDCNLRCKYCFADEGEYHGHKGKMSI-------------DTAKKALEY 137

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSKRRITLSTSGFVP 226
           ++  S  RK   + + G GEPL   D +K+ +       ++   +      T ST     
Sbjct: 138 VIKRSGPRKNIEVDLFG-GEPLMAMDVIKEVVQYGKELGENHKKNIRFTMTTNSTLLTPE 196

Query: 227 NIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-ARRITF 284
            +  +  E   ++L+I      ND   +       Y  E ++   ++        ++   
Sbjct: 197 VVDFLDKEMGNIILSIDGRKEINDQVRVRADGTGSY--EKILPQIKNMISKRTIGKQYYV 254

Query: 285 EYVMLKGINDSPRDALNLIK 304
                K   D   D + L+ 
Sbjct: 255 RGTFTKKNPDFFNDIMALVN 274


>gi|210630155|ref|ZP_03296270.1| hypothetical protein COLSTE_00154 [Collinsella stercoris DSM 13279]
 gi|210160628|gb|EEA91599.1| hypothetical protein COLSTE_00154 [Collinsella stercoris DSM 13279]
          Length = 342

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 20/191 (10%)

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV--KKSLSIA 204
           +  Q + AR+  G+    E+I   V       I+ + + G GEPL +   V   + +   
Sbjct: 1   MPEQGVPARAH-GELLTAEEIAHFVRLVAKEGITRVRLTG-GEPLVSHRIVPLIEEIRAI 58

Query: 205 SDSMGLSFSKRRITLSTSG-FVPNIA-RVGEEIGVMLAISLHAVSNDLRNILVPINRKYP 262
                       I+L+T+G  +P +A  + +     + ISL  ++ +    +  + R   
Sbjct: 59  P-------GIEDISLTTNGALLPRLAPALRDAGLNRVNISLDTLNPERFAQITRLGRVEQ 111

Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322
               IDA   Y        +    V+++ +    +D L L ++    P  +  I + P  
Sbjct: 112 ALAGIDAALEY----GFEPVKVNTVVVRRM---RQDVLELARLSLNRPVHVRFIEYMPIG 164

Query: 323 GCEYLCSDQKD 333
                 SD   
Sbjct: 165 SSAQKASDGAQ 175


>gi|152986331|ref|YP_001349180.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa
           PA7]
 gi|150961489|gb|ABR83514.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa
           PA7]
          Length = 331

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 27/174 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C +   + +          QVL    L            +    +G  +  I 
Sbjct: 25  CDFRCTYCMSEDMQFLPR-------DQVLSLEELY----------AVADAFIGLGVRRIR 67

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           + G GEPL     V+K ++     +G       + ++T+G    +     E+       L
Sbjct: 68  ITG-GEPL-----VRKGIAGLLARLGQRPELEDLAITTNG--SQLRERAGELKAAGVRRL 119

Query: 244 HAVSNDLRNILV-PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           +   + LR        R   LE ++D  +     +   RI    V+ KG ND  
Sbjct: 120 NVSLDSLRRERFAAFTRSDRLEQVLDGIQA-AREAGFERIKLNCVVQKGRNDDE 172


>gi|293401093|ref|ZP_06645237.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305219|gb|EFE46464.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 256

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 74/236 (31%), Gaps = 52/236 (22%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C FC+        N    +I+          G     + +   +      K S  
Sbjct: 35  GCRMRCQFCH--------NADTWKIME---------GSETAEDVLRKALRYKPYWKHSGG 77

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237
           + +  GEPL   D + +   +A              + T G       P  ++  E +  
Sbjct: 78  ITVSGGEPLLQIDFLLELFKLAKQK------GVHTVIDTCGNPFTREEPFFSKFQELMQY 131

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              + + +  ++      L         + ++D  R+   +     +   +V++   +D 
Sbjct: 132 TDLVMLDIKHINQAKHQQLTGWGN----DNILDMARYLSSIDK--PVWIRHVLVPQRSDD 185

Query: 296 PRDALNL---IKILKGIPAKINLIPFNPWPGCEYL------------CSDQKDIVT 336
             D   L   +K L  +  +  ++P++     ++               D++ I  
Sbjct: 186 EEDLKCLDAFVKTLHNVK-RFEVLPYHTLGAYKWKELGMEYPLEGIEPPDKETIER 240


>gi|254294676|ref|YP_003060699.1| glycosyl transferase family 2 [Hirschia baltica ATCC 49814]
 gi|254043207|gb|ACT60002.1| glycosyl transferase family 2 [Hirschia baltica ATCC 49814]
          Length = 748

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 71/187 (37%), Gaps = 30/187 (16%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C++C                  Q          +     +  ++  S     +  V
Sbjct: 426 CNMRCTYCSPTYYG-----------GQ-------EASYSTPNILANLLEQSDNLSSNCHV 467

Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           + G GEP    NF  V  +L  A++++G    K R+  ++  +  ++    E     L  
Sbjct: 468 VWGGGEPTLSPNFKPV-NALLSANENVG----KIRVLSNSLKYSKSLVEYLEHDKFHLVT 522

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDAL 300
           S+ A + D+   +    +   ++ +++  + Y   LSN  R+T +Y++    N    +  
Sbjct: 523 SIDAGTQDMFAQIRGRGK---MQSVLENLQKYKTALSNKNRLTIKYILTPE-NLGTEELQ 578

Query: 301 NLIKILK 307
             +  LK
Sbjct: 579 AYVDQLK 585


>gi|91201046|emb|CAJ74104.1| similar to moaA/nirJ/ppqE family of cofactor synthesis proteins
           [Candidatus Kuenenia stuttgartiensis]
          Length = 350

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 28/140 (20%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L C +CY+          A E             +    E+++ +V  + G     I+
Sbjct: 38  CNLRCLYCYSSA-GF-----AAE-------------NELSLEEMKSVVDQAKGLGAKKII 78

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAI 241
           ++G GEPL  ++ V   +   +         ++I   T+G +    IA+      V + I
Sbjct: 79  LLGGGEPLL-YEGVVDIIKYINS-----IGLQQILF-TNGVLIDKEIAQTLYRNKVSVVI 131

Query: 242 SLHAVSNDLRNILVPINRKY 261
             ++ + +++++L      Y
Sbjct: 132 KYNSFNPEVQDMLANAKGTY 151


>gi|303240613|ref|ZP_07327128.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302591850|gb|EFL61583.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 297

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 76/264 (28%), Gaps = 45/264 (17%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFC-----------YTGTQKLVRNLTAEEILLQVLLARSLL 158
            +   T C   +  C   C                   K V N +         LA +L 
Sbjct: 48  FREYCTGCGKCRAVCKAGCFIVNGENHYFNETNCVRCGKCVLNCSHG------ALAYNLR 101

Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218
              P     E      + R I  I + G GEP+  +    ++  +     G+        
Sbjct: 102 EGTPEEIFKEIKAELILLRNIGGITLSG-GEPMLQY---LEAKELLKLCKGMG---AHTA 154

Query: 219 LSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           + TSG V       + E +     +     ++  +   +       +E  ++        
Sbjct: 155 IETSGAVNIKCFEELLEYVDC--WLFGLKQTDAEKCCAMTGADFNNIEQNLNFLASLVP- 211

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKI-LKGIPAKINLIPFNPWPGCEYLC------- 328
               +I     +++G  D   +   + +I L      I L+P+NP  G  Y         
Sbjct: 212 ---DKIIIRTPIIEGFTDDIYNIQRIYEIMLSHSLNTIELLPYNPHTGHYYKAMGKDFDE 268

Query: 329 -----SDQKDIVTFSECIKRSGYS 347
                  +  +      +K  G +
Sbjct: 269 QKFKLPSEDILKNIVNILKLKGIN 292


>gi|114650303|ref|XP_509696.2| PREDICTED: glypican-5 [Pan troglodytes]
          Length = 572

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 96/331 (29%), Gaps = 66/331 (19%)

Query: 63  LLNQHFSIIYPEIVDE--KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
            + + + I   + + +  + S   T K+L+   A      +E     I +    T  +  
Sbjct: 72  KMEERYQIAARQDMQQFLQTSS-STLKFLISRNAAAFQETLET---LIKQAENYTSILFC 127

Query: 121 QVGCSLTCSFCYTGTQKLV--------RNLTAEEILLQV------LLARSLLGDFPGCED 166
               ++      +  +            ++  EE + +       L+   L+        
Sbjct: 128 NTYRNMALEAAASVQEFFTDVGLYLFGADVNPEEFVNRFFDSLFPLVYNRLINPAVTDSS 187

Query: 167 IEGMVIPSVGRK-------ISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSFSK- 214
           +E      + R+       I   VM  MG  L       ++    + + + +  L FSK 
Sbjct: 188 LEYSECIRMARRDVSPFGNIPKRVMGQMGRSLLPSRTFLQALNLGIEVINTTDYLHFSKE 247

Query: 215 -------RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY--PLEM 265
                   +      G       +G  + VM     H         L P    Y   LE 
Sbjct: 248 CSRALLKMQYCPHCQGLTLTKPCMGYCLNVMRGCLAHMA------ELNPHWHAYIRSLEE 301

Query: 266 LIDACRHYPGLSNARRITFEYVMLK---GINDSPRDALNLIKILKGIPAKINLIPFNPWP 322
           L DA               E+V+L     +ND+   A    + L        L   N   
Sbjct: 302 LSDAMH--------GTYDIEHVLLNFHLLVNDAVLQAHLNGQKL--------LEQVNRIC 345

Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           G       Q    +F +  ++ G  +  R  
Sbjct: 346 GRPVRTPTQSPRCSFDQSKEKHGMKTTTRNS 376


>gi|18313817|ref|NP_560484.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum
           aerophilum str. IM2]
 gi|18161379|gb|AAL64666.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum
           aerophilum str. IM2]
          Length = 254

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 34/171 (19%)

Query: 91  RFPARCIGGPVEIE--TVYIPEK----SRGTLCVSSQ--VGCSLTCSFCYTGTQKLVRNL 142
           R     +   V+IE   VY   K     R    +++   VGC+L C  C+       RN 
Sbjct: 6   RLLQLVLEHAVKIEGGVVYRKYKRFRADRWYGGIATADVVGCNLRCGMCWAW-----RNT 60

Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202
           +       VL A    G +    ++   +      K    V +  GEPL   +++ + + 
Sbjct: 61  SF------VLTA----GAWMAPHEVAARLREIAKSKGFQQVRISGGEPLIAPEHLLEVID 110

Query: 203 IASDSMGLSFSKRRITLSTSGFV---PNIARVGEEIGVMLAISLHAVSNDL 250
           +         S+    + T+G +        +      ++ +S+   + + 
Sbjct: 111 LL--------SEYTFVVETNGVLINRNLAKELASRPNAVVRVSIKGATPEE 153


>gi|182416944|ref|ZP_02948328.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum
           5521]
 gi|237668693|ref|ZP_04528677.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379242|gb|EDT76743.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum
           5521]
 gi|237657041|gb|EEP54597.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 305

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 62/213 (29%), Gaps = 46/213 (21%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CS  C       Q  +  +T +EIL                  I         R    I 
Sbjct: 95  CSSQCPTGAIVQQGKL--MTIKEILD-----------------IVEKDSDFYSRSEGGIT 135

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSF------SKRRITLSTSGFVP--NIARVGEEI 235
           + G GEPL                  ++        +    + T G+     + R    +
Sbjct: 136 LSG-GEPL------------MQGEFTINLLKEAKRRRMNTAIETCGYADYETLKRCAMNL 182

Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              +   + ++ ND       +  +  L      C  +  L+   R       +   ND+
Sbjct: 183 D-TILFDIKSMDNDKHKKFTGLENEVILNNFNKLCVDFQKLNKCVRTPV----IPTFNDN 237

Query: 296 PRDALNLIKILKGIP-AKINLIPFNPWPGCEYL 327
             D   +   LK  P  K  L+P++ +   +Y 
Sbjct: 238 EEDIRAIADFLKNKPNVKYELLPYHKFGEGKYK 270


>gi|229824233|ref|ZP_04450302.1| hypothetical protein GCWU000282_01537 [Catonella morbi ATCC 51271]
 gi|229786587|gb|EEP22701.1| hypothetical protein GCWU000282_01537 [Catonella morbi ATCC 51271]
          Length = 279

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 71/241 (29%), Gaps = 49/241 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C FC+                      R      P     E +       K   +
Sbjct: 57  GCRLRCEFCHNPD---------------TWATRGGHDYTPQQLFDEAVQYQDFWGKKGGV 101

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237
            + G GEPL   D + +   I     G+       TL + G       P  ++  E +  
Sbjct: 102 TVSG-GEPLLQIDFIIEYFKICKA-NGI-----HTTLDSCGGPFTRKEPFFSKFNELLKY 154

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              + + L  + +D    L       P E ++D   +   +   + +   +V++    D 
Sbjct: 155 TDLILLDLKHIDSDGHRKLTGQ----PNENILDLAHYLSDI--GQPVWIRHVLVPERTDF 208

Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341
               + L   +K +    K  ++P++     +Y                   +      +
Sbjct: 209 DEYLIRLSAFVKTLKNVLKFEVLPYHKLGVYKYEALGIKYRLAGIEPPTPDRVENAKRIL 268

Query: 342 K 342
           +
Sbjct: 269 E 269


>gi|224368268|ref|YP_002602431.1| radical SAM domain family protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223690984|gb|ACN14267.1| radical SAM domain family protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 441

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 74/201 (36%), Gaps = 28/201 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C  C +           EE    ++  +  +   P   +I  + +  + +  +++V
Sbjct: 207 CNANCLGCISFQ---------EE--NNLVACQERITFTPSPTEIAQVALEHINKTDNSVV 255

Query: 184 MMGMG---EPLCNFDNVKKSLSIA---SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
             G G   +PL  F  ++ ++ I    +D   ++ +        +G    + R+      
Sbjct: 256 SFGQGCEGDPLTAFHVIEPAIEIIRRATDRGTINMNTN------AGMPDRLERLFTAGLD 309

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            + +S+++V            + +    ++ +       S  + ++  Y+   G+ DS  
Sbjct: 310 SVRVSMNSVRQTCYTAYFRP-KSFTFSDVVKSIDT--AGSMGKFVSINYLNCPGVTDSEA 366

Query: 298 DALNLIKILKGIPAKINLIPF 318
           +   L K L   P K  +I +
Sbjct: 367 EFTTLKKFLANHPVK--MIQW 385


>gi|189501679|ref|YP_001957396.1| hypothetical protein Aasi_0223 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497120|gb|ACE05667.1| hypothetical protein Aasi_0223 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 441

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 62/167 (37%), Gaps = 16/167 (9%)

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
             R    +  Q GC+  CSFC         R+ T E I+ Q   AR +         + G
Sbjct: 138 GDRTRTFLKVQDGCNYHCSFCTIPLARGKSRSDTIESIVEQ---ARKIADQGIKEIVLTG 194

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229
           + I   G     I+         NF ++ ++L    D      S     L T   +  +A
Sbjct: 195 VNIGDYG-----IIDNRRQ---TNFLSLIEALEKVVDIKRFRISSIEPNLLTDEIIQFVA 246

Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
           + G  +     I L + +ND+   L  + R+Y  E+ ++   H   L
Sbjct: 247 QSGRFVP-HFHIPLQSGNNDI---LKLMRRRYQRELYVERVAHIKKL 289


>gi|86607742|ref|YP_476504.1| pyruvate formate-lyase activating enzyme [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556284|gb|ABD01241.1| pyruvate formate-lyase activating enzyme [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 249

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 83/266 (31%), Gaps = 45/266 (16%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157
           G    +ET    +       + +Q GC L C +C+       R+  A     Q++   SL
Sbjct: 13  GRIHSVETCGTVDGPGIRFVIFTQ-GCPLRCLYCHNPD---CRDPQAG----QLVTVESL 64

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
           + +    ++                V    GEPL     V +        +GL      +
Sbjct: 65  IAEIQRYKNYLRGGG----------VTATGGEPLMQPTFVAEIFRR-CHELGL---HTAL 110

Query: 218 TLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276
             S  G +     V E    V+L I  +         L        LE  ++  R+   +
Sbjct: 111 DTSGYGQLEAAKPVLEHTDLVLLDIKSYLP------ELYRKVTGVSLEPTLNLARYLDQI 164

Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------- 327
                    +V++ G+ D   +   L + +  +    ++ ++PF+     ++        
Sbjct: 165 HK--PTWIRFVLVPGLTDPEENIKGLAEFVATLSNVERVEVLPFHKMGEYKWQQLGLPYT 222

Query: 328 -----CSDQKDIVTFSECIKRSGYSS 348
                    + +    +  +  G  +
Sbjct: 223 LADVDPPTPEQVNHALQIFRDQGLVA 248


>gi|311695843|gb|ADP98716.1| molybdenum cofactor biosynthesis protein A [marine bacterium HP15]
          Length = 330

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 71/229 (31%), Gaps = 40/229 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C +C       +          QVL    +        D+    I   G       
Sbjct: 25  CDFRCVYCMAEDMTFLPR-------QQVLTLEEIARVARSFVDLGTEKIRLTG------- 70

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMG-LSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
               GEP+     V+K +      +G        +T + S        + +     L IS
Sbjct: 71  ----GEPM-----VRKDILELVKEIGTYGLRDFAMTTNGSQLATMAEPLRKAGMHRLNIS 121

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           L ++  +    +    +   +   IDA R     +  R I    V++KG ND   +   L
Sbjct: 122 LDSLDPEKFRNITRTGKLSQVLDGIDAARE----AGFRGIKINTVVMKGRND--EEVPEL 175

Query: 303 IKILKGIPAKINLI---PFNPWPGCEY---LCSDQKDIVTFSECIKRSG 345
           ++  +     I  I   P       +    LC+ ++      + I++  
Sbjct: 176 VEFARKKQVDITFIEEMPLGEISEHDRGLALCTSEEV----RDIIRKHH 220


>gi|269121318|ref|YP_003309495.1| pyruvate formate-lyase activating enzyme [Sebaldella termitidis
           ATCC 33386]
 gi|268615196|gb|ACZ09564.1| pyruvate formate-lyase activating enzyme [Sebaldella termitidis
           ATCC 33386]
          Length = 241

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 82/242 (33%), Gaps = 45/242 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N+            ++        E +  +       K   +
Sbjct: 27  GCPLRCLYCH--------NVDT-------WDLKNKKYMLTPEETMHEISKVRGFIKSGGL 71

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
            + G GEPL   + + +   +  +       K    + TSG++    I  V +   ++L 
Sbjct: 72  TVSG-GEPLLQPEFILELFKLCREE------KIHTAIDTSGYLLNDRIKEVLDLTDLVLL 124

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
              H +  D    L  +  K P    ++    Y    N   +   YV++ G  D+ +D  
Sbjct: 125 DIKH-IDPDKYQALTSVELK-PTLEFME----YLSKINK-PVWVRYVLVPGYTDNEKDLK 177

Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRSGY 346
              K +       +++++PF+     ++                ++DI    E  K  G 
Sbjct: 178 AWAKYVSNFKNVERVDILPFHQMASYKWEGLGRSYELKDTPAPSKEDIKKTEEIFKSFGL 237

Query: 347 SS 348
           ++
Sbjct: 238 NT 239


>gi|208779105|ref|ZP_03246451.1| lysine 2,3-aminomutase YodO family protein [Francisella novicida
           FTG]
 gi|208744905|gb|EDZ91203.1| lysine 2,3-aminomutase YodO family protein [Francisella novicida
           FTG]
          Length = 328

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 81/263 (30%), Gaps = 58/263 (22%)

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LL Q       E++D+  S D                  ++  +      R  + + +Q 
Sbjct: 62  LLKQVLPTADEEVIDQAYSSD----------PLDEKNYNKVPGLLHKYHGR--VLLIAQT 109

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
            C++ C +C+        N+                   PG +D           +    
Sbjct: 110 SCAVHCRYCFRKEFDYKENI-------------------PGRKDWLKAFEYIANDQSIEE 150

Query: 183 VMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGFVPNIARVGEE-IG 236
           V++  G+PL N D + +     +        L   S+  + L        +  + E  + 
Sbjct: 151 VILSGGDPLLNNDEILEFFIENIQQIPHIKRLRIHSRIPVVLPERMTTKLLKILSEHRLD 210

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVMLKGINDS 295
            +L I ++  +               L+  +        +     IT  +  +LK IND 
Sbjct: 211 TVLVIHVNHPNE--------------LDDNVSKVLK--EIHKHGIITLNQSTLLKDINDD 254

Query: 296 PRDALNLIKILKGIPAKINLIPF 318
                 L   L  I AK+  IP+
Sbjct: 255 ANVLYALSTKL--INAKV--IPY 273


>gi|302534965|ref|ZP_07287307.1| pyruvate formate-lyase 1-activating enzyme [Streptomyces sp. C]
 gi|302443860|gb|EFL15676.1| pyruvate formate-lyase 1-activating enzyme [Streptomyces sp. C]
          Length = 289

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 79/215 (36%), Gaps = 27/215 (12%)

Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173
           GT  V+   GC LTC +C+      +RN         +  AR             G    
Sbjct: 65  GTRFVTFLAGCPLTCLYCHNPDTMRMRNGRRTSADAVIAEARKYTRFISASG---GGATL 121

Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233
           S G  +   V  G            + L      +GL        L TSGF+ +  R  +
Sbjct: 122 SGGEPLLQPVFAG------------ELLHRLKSDLGL-----HTALDTSGFLGS--RASD 162

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
            +   + + L  + +  R+    +  + PLE  +D  R    L   + +   +V++ G+ 
Sbjct: 163 ALLRDVDLVLLDIKSWDRDTYRKVTGR-PLEPTLDFARRLADL--GKEVHLRFVLVPGLT 219

Query: 294 DSPRDALNLIKILK--GIPAKINLIPFNPWPGCEY 326
           ++  +   +       G  ++++++PF+     ++
Sbjct: 220 NARENVEGIAAFAGTLGNVSRVDVLPFHKLGESKW 254


>gi|77919185|ref|YP_357000.1| hypothetical protein Pcar_1586 [Pelobacter carbinolicus DSM 2380]
 gi|77545268|gb|ABA88830.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380]
          Length = 326

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 71/194 (36%), Gaps = 29/194 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAE----EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           C+ +C +C  G    ++N        E LLQ +  R                       +
Sbjct: 32  CTYSCVYCQVGRMTKMQNARQAFYKPEKLLQGVHNR-------------LENTRVASGCV 78

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA-RVGEEIGVM 238
             +  +  GEP  +  N+ + + +      L      IT S+  +  ++   + +   V 
Sbjct: 79  DYLTFVPDGEPTLD-KNLGEEIHLL---ENLDIPIGVITNSSLLWREDVRNELAKADWVS 134

Query: 239 LAISLHAVSNDL--RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           + I      ++L  R  +   ++   L  ++D    +      + +T E ++++G+ND+P
Sbjct: 135 VKID---TVDELIWR-KINRPHKALCLSRILDGILTFSRKFTGKLVT-ETMLVRGVNDNP 189

Query: 297 RDALNLIKILKGIP 310
                + + L  + 
Sbjct: 190 GCVQGVAEFLHKLQ 203


>gi|261403551|ref|YP_003247775.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
 gi|261370544|gb|ACX73293.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7]
          Length = 300

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 97/269 (36%), Gaps = 44/269 (16%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC     K      A E   +  +A ++L      + +  ++      K+  I 
Sbjct: 38  CNIACKFCRRSLGK-----EACE--NRPGVALTILKPEEVEDYLNRVLKEIPNIKVVGI- 89

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAI 241
             G G+ L N     ++L I  +     F      LST+G +      ++ +     + +
Sbjct: 90  -AGPGDSLFN-KETFETLKIIDEK----FPNLIKCLSTNGLLLNKYYKKLADLNVKTVTV 143

Query: 242 SLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +++A+  ++   +V                K  +E  ID  +         +I    V++
Sbjct: 144 TVNAIDPEILKEIVEWVYYDKKVHYGIEGAKILIENQIDGIKKAYDEDLIIKINT--VLI 201

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ-KDIVTFSECIKRSGYSS 348
             IN +    + + K LK      N+IP  P     +L     ++I    E  ++     
Sbjct: 202 PEINMN--HVVEIAKELKDFVYIQNIIPLIPLYKMSHLRPPTCEEIKKVREECEKY---- 255

Query: 349 PIRTPRGLDILAACGQLKSLSKRIPKVPR 377
            I   R      ACGQ ++ +  + K  +
Sbjct: 256 -IPQFR------ACGQCRADAVGLIKERK 277


>gi|159904963|ref|YP_001548625.1| radical SAM domain-containing protein [Methanococcus maripaludis
           C6]
 gi|159886456|gb|ABX01393.1| Radical SAM domain protein [Methanococcus maripaludis C6]
          Length = 457

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 69/194 (35%), Gaps = 24/194 (12%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           I ++    + V    GC++ C FC           + +E +           D       
Sbjct: 123 IIDRGTNVIQVRGLSGCNINCPFC-----------SVDEGVHSKSRKNDYYVDVDYLVSE 171

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNF--DNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
              +    G       + G GEP   +   ++ +SL+  +        K  +++ T+G V
Sbjct: 172 YEKIADFKGYNKLEAHLDGQGEPSLYYPLPDLVQSLNEINSKN-----KGIVSIQTNG-V 225

Query: 226 PNIARVGEEIGVMLAISLH---AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
               ++ +++ V     ++      ++  +  +  ++ Y +E +++   +    ++   +
Sbjct: 226 HLTEKLIDDLEVAGLHRINLSINAIDENFSKGLSGSKNYDIEKIMEIAEYI--KNSKIHL 283

Query: 283 TFEYVMLKGINDSP 296
               ++L   ND  
Sbjct: 284 LIAPLLLPNYNDEE 297


>gi|169347314|ref|ZP_02866252.1| hypothetical protein CLOSPI_00029 [Clostridium spiroforme DSM 1552]
 gi|169293931|gb|EDS76064.1| hypothetical protein CLOSPI_00029 [Clostridium spiroforme DSM 1552]
          Length = 214

 Score = 37.9 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 34/167 (20%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF-PGCEDIEGMVIPSVGRKISNI 182
           C L C+FC       +RN        Q++   SL  ++ P  E I              +
Sbjct: 34  CFLACTFC-------LRNTK------QMIKDNSLWLEYEPSVEMIIDEFEKYNLNDFKEV 80

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG---------FVPNIARVGE 233
           V  G GEPL   D+V +             S   I ++T+G           P+   + +
Sbjct: 81  VFCGFGEPLIRHDDVMEVAGYLKSKR----SDLPIRINTNGLASVALNRDITPDFENLID 136

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
                L+ISL+A + +    +     KY ++   D    +   S   
Sbjct: 137 ----TLSISLNAPNKEEYYQITRS--KYGIDSF-DHMLDFASKSKKH 176


>gi|19703606|ref|NP_603168.1| pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296328725|ref|ZP_06871240.1| pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|19713712|gb|AAL94467.1| Pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296154162|gb|EFG94965.1| pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 243

 Score = 37.9 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 80/214 (37%), Gaps = 34/214 (15%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N+   E+            ++    +     +  V   +S  
Sbjct: 27  GCPLRCLYCH--------NVDTWELKD---------KNYIYTPEEVLAELNKVKAFLSGG 69

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
           + +  GEPL     V +         G+        L TSG++      +V E   ++L 
Sbjct: 70  ITISGGEPLLQSSFVLEVFK-LCKENGI-----HTALDTSGYIFNEQAKKVLEYTDLVL- 122

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + +  +  D+   L  +     LE  ++  ++   ++        YV++ G  D  +D  
Sbjct: 123 LDIKHIDKDMYKKLTSV----DLEPTLNFIKYLQEINK--PTWIRYVLVPGYTDDIKDLN 176

Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYLCSDQK 332
           +  K +       +++++PF+     ++  ++++
Sbjct: 177 DWAKFVSQFDIVKRVDILPFHQMAIYKWEKTNRE 210


>gi|325282230|ref|YP_004254772.1| glycyl-radical enzyme activating protein family [Odoribacter
           splanchnicus DSM 20712]
 gi|324314039|gb|ADY34592.1| glycyl-radical enzyme activating protein family [Odoribacter
           splanchnicus DSM 20712]
          Length = 260

 Score = 37.9 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 62/219 (28%), Gaps = 30/219 (13%)

Query: 123 GCSLTCSFCY--------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           GC L C +C+        T + K VR L   E      + +   G        E      
Sbjct: 27  GCRLHCRWCHNPESQAVGTVSMKQVRKLGDREFEE---IRKVGYGISVDELVEEIAKDAV 83

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
              +    V    GEPL     V   L                 + T+G       + E 
Sbjct: 84  FFEESGGGVTFSGGEPLL--QPVF-LLECLKACKARRI---HTCIDTAGVASGAY-LEEI 136

Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKG 291
                     +           +            +AC H   ++     +     ++ G
Sbjct: 137 CRYTDLFLYDVKTADPQKFEAYIGKG-------FREACEHLRKIAGQGAGVIVRIPVIPG 189

Query: 292 INDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC 328
            ND  +     I+ L+ +P    +NL+PF+     +Y  
Sbjct: 190 FNDDKKSVQETIRFLQTMPVLKEVNLLPFHRTGADKYKR 228


>gi|255099315|ref|ZP_05328292.1| 4-hydroxyphenylacetate decarboxylase, activating subunit
           [Clostridium difficile QCD-63q42]
          Length = 316

 Score = 37.9 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 23/187 (12%)

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           R    +   G GEPL   + +     +      ++     I  S         ++  +I 
Sbjct: 134 RSNGGVTFSG-GEPLLQHEFL---HEVLLKCHEVNV-HTAIETSACVSNEVFNKIFNDID 188

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
                  H      R         Y  +++++   +        R+     ++ G NDS 
Sbjct: 189 FAFIDIKHM----DREKHKEQTGVYN-DLILENISNLANSDWNGRLVLRVPVISGFNDSD 243

Query: 297 RDALNLIKIL-KGIPAKINLIPFNPWPGC-------EYLCSDQKDI-----VTFSECIKR 343
            +  ++I  + K    +INL+PF+            EY  SD+ D+         +    
Sbjct: 244 ENISDIISFMHKNNLVEINLLPFHRLGESKWTQLGKEYEYSDKGDVDEGHLEELQDIFLD 303

Query: 344 SGYSSPI 350
           +G +  +
Sbjct: 304 NGIACYV 310


>gi|75392923|sp|Q84F14|HPDA_CLODI RecName: Full=4-hydroxyphenylacetate decarboxylase activating
           enzyme; Short=Hpd-AE
 gi|28300943|emb|CAD65891.1| HpdA protein [Clostridium difficile]
          Length = 316

 Score = 37.9 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 23/187 (12%)

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
           R    +   G GEPL   + +     +      ++     I  S         ++  +I 
Sbjct: 134 RSNGGVTFSG-GEPLLQHEFL---HEVLLKCHEVNV-HTAIETSACVSNEVFNKIFNDID 188

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
                  H      R         Y  +++++   +        R+     ++ G NDS 
Sbjct: 189 FAFIDIKHM----DREKHKEQTGVYN-DLILENISNLANSDWNGRLVLRVPVISGFNDSD 243

Query: 297 RDALNLIKIL-KGIPAKINLIPFNPWPGC-------EYLCSDQKDI-----VTFSECIKR 343
            +  ++I  + K    +INL+PF+            EY  SD+ D+         +    
Sbjct: 244 ENISDIISFMHKNNLVEINLLPFHRLGESKWTQLGKEYEYSDKGDVDEGHLEELQDIFLD 303

Query: 344 SGYSSPI 350
           +G +  +
Sbjct: 304 NGIACYV 310


>gi|313905270|ref|ZP_07838637.1| pyruvate formate-lyase activating enzyme [Eubacterium
           cellulosolvens 6]
 gi|313469881|gb|EFR65216.1| pyruvate formate-lyase activating enzyme [Eubacterium
           cellulosolvens 6]
          Length = 244

 Score = 37.9 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 76/242 (31%), Gaps = 51/242 (21%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+                      ++           +     +  R    I
Sbjct: 28  GCKMRCRYCHNAD---------------TWKMQTDNMKTADELLDQAERYKAYWRDDGGI 72

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237
            + G GEPL   D +      A    G+     +  + T+G       P  ++  E +  
Sbjct: 73  TVSG-GEPLLQIDFLLDLFKKA-KERGI-----KTCIDTAGQPFTREEPFFSKFKELMQY 125

Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
              L + +  + ++    L       P E + D  R+   +     I   +V++ GI D 
Sbjct: 126 TDLLLVDIKHIDSEEHKKLTAQ----PNENIHDMFRYLSEIDK--PIWIRHVLVPGITDD 179

Query: 296 P---RDALNLIKILKGIPAKINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
               R+    I+ L  +  +I ++P++     ++               D   +    E 
Sbjct: 180 DRWLRETRKFIETLHNVQ-RIEVLPYHSLGEFKWEELGVPYTLGGVNPPDADRVKNAVEI 238

Query: 341 IK 342
           ++
Sbjct: 239 LR 240


>gi|325969715|ref|YP_004245907.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708918|gb|ADY02405.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 251

 Score = 37.9 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI--PFNPWPGCEYLCSDQKD 333
           L +  ++ FE V++ G+ND   D   + K L GI     LI  P  P PG  +    Q++
Sbjct: 160 LESGIKVIFETVLIPGLND-INDIEEIAKYLAGIAKDPTLIIDPLIPIPGTPWRRPTQEE 218

Query: 334 IV 335
           + 
Sbjct: 219 LN 220


>gi|254457135|ref|ZP_05070563.1| radical SAM domain protein [Campylobacterales bacterium GD 1]
 gi|207085927|gb|EDZ63211.1| radical SAM domain protein [Campylobacterales bacterium GD 1]
          Length = 341

 Score = 37.9 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 92/272 (33%), Gaps = 36/272 (13%)

Query: 82  CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS-SQVGCSLTCSFCYTGTQKLVR 140
            DG  K L+ +          +E   +      +   S   VGC+L+C FC         
Sbjct: 41  EDGELKLLV-YGLAAAVNVDPVEKKPMFHFLPKSRAFSVGTVGCNLSCKFCQN------- 92

Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
                EI  Q   ++       G E     ++        + +     EP+  F+    +
Sbjct: 93  ----HEI-SQ--YSKENNHKIAGHELPPEQIVALAIENKCDSIAYTYNEPIVFFEYTYDT 145

Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
               +   G+    + I +++         + +     + I + + S++    +    R 
Sbjct: 146 AK-LAHEKGI----KNIYVTSGYETKKAIDLLQPYIDGMNIDIKSFSDEFYKEIC-GAR- 198

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN- 319
             L+ +++A ++         IT   +++ G NDS  +  ++ + +  +      IP++ 
Sbjct: 199 --LKPVLEAVKYAHEKGIWVEITT--LLISGKNDSDEEIRSIARFIADLDTS---IPWHL 251

Query: 320 -----PWPGCEYLCSDQKDIVTFSECIKRSGY 346
                 +   +   + +  ++   +  +  G 
Sbjct: 252 SAFHPMYKMLDVERTPESTLLRAYKIGQEEGL 283


>gi|148260603|ref|YP_001234730.1| molybdenum cofactor biosynthesis protein A [Acidiphilium cryptum
           JF-5]
 gi|146402284|gb|ABQ30811.1| GTP cyclohydrolase subunit MoaA [Acidiphilium cryptum JF-5]
          Length = 331

 Score = 37.9 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 26/177 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C +C       +                    D    E++E +    V   +  + 
Sbjct: 23  CDFRCVYCMAEDMTFLP-----------------KADLLSLEELERLAGAFVDLGVRKLR 65

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           + G GEPL     V   ++     +G       +TL+T+G    + R  +E+       +
Sbjct: 66  LTG-GEPLV-RRGVMALINRLGQRIGQGL--DELTLTTNG--SQLGRFADELVAAGVKRV 119

Query: 244 HAVSNDLRNILVPINRKYP-LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           +   + L         ++  L  +ID        +   R+    V LKG+N+   DA
Sbjct: 120 NVSIDTLDEEKFRTITRWGRLPQVIDGV--MAAKAAGLRVKVNAVALKGVNEDEFDA 174


>gi|150020309|ref|YP_001305663.1| radical SAM domain-containing protein [Thermosipho melanesiensis
           BI429]
 gi|149792830|gb|ABR30278.1| Radical SAM domain protein [Thermosipho melanesiensis BI429]
          Length = 439

 Score = 37.9 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 75/206 (36%), Gaps = 36/206 (17%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            + ++    C+L C +CY  +                    + + DF   +     +   
Sbjct: 70  AIVLTISHECNLQCKYCYGNSGTYN---------------NAGIMDFKIAKMAIEKLFDK 114

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVG 232
               +  I   G GEPL NF+ +++ +  A   +G +    R  ++T+G     +IA   
Sbjct: 115 EQSNV-GISFFG-GEPLINFEVIRQVVKFAKKYLGKN---VRFGITTNGTLINDDIASFL 169

Query: 233 EEIGVMLAISLHA---VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +     + +SL      ++ LR      N +     +I+  +        RRI+    + 
Sbjct: 170 KNNDFNIMVSLDGNKLNNDKLRR---TKNNEGTYTRIIEGIKTLTSHDINRRISVHATLT 226

Query: 290 KGINDSPRDALNLIKILKGIPAKINL 315
              ND       LI+++K     +NL
Sbjct: 227 SVNND-------LIELVKHF-VNMNL 244


>gi|326403798|ref|YP_004283880.1| molybdenum cofactor biosynthesis protein A [Acidiphilium multivorum
           AIU301]
 gi|325050660|dbj|BAJ80998.1| molybdenum cofactor biosynthesis protein A [Acidiphilium multivorum
           AIU301]
          Length = 331

 Score = 37.9 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 26/177 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C +C       +                    D    E++E +    V   +  + 
Sbjct: 23  CDFRCVYCMAEDMTFLP-----------------KADLLSLEELERLAGAFVDLGVRKLR 65

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           + G GEPL     V   ++     +G       +TL+T+G    + R  +E+       +
Sbjct: 66  LTG-GEPLV-RRGVMALINRLGQRIGQGL--DELTLTTNG--SQLGRFADELVAAGVKRV 119

Query: 244 HAVSNDLRNILVPINRKYP-LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           +   + L         ++  L  +ID        +   R+    V LKG+N+   DA
Sbjct: 120 NVSIDTLDEEKFRTITRWGRLPQVIDGV--MAAKAAGLRVKVNAVALKGVNEDEFDA 174


>gi|154295552|ref|XP_001548211.1| predicted protein [Botryotinia fuckeliana B05.10]
 gi|150844027|gb|EDN19220.1| predicted protein [Botryotinia fuckeliana B05.10]
          Length = 357

 Score = 37.9 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 11/132 (8%)

Query: 209 GLSFSKRRITL--STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266
           G+S  +   T+  S +GF+     +       +A       ++ R+     N +  L++ 
Sbjct: 190 GISIGREDYTIACSLTGFLKQNDDIYSLTCRQVAF----PDDNFRSEYKYRNGEEKLQVS 245

Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG-IPAKINLIPFN----PW 321
           I A + +       + T + +     N + +DA N+ K  +  I  K  LI +N      
Sbjct: 246 IPALKDHVETKRRLKSTLDSIEFAIKNSAFKDAANIDKKYRNEILRKAALIRYNDAEDYC 305

Query: 322 PGCEYLCSDQKD 333
           P   Y+ +  ++
Sbjct: 306 PNAGYVSAAPEE 317


>gi|330991009|ref|ZP_08314963.1| L-lysine 2-3-aminomutase [Gluconacetobacter sp. SXCC-1]
 gi|329761830|gb|EGG78320.1| L-lysine 2-3-aminomutase [Gluconacetobacter sp. SXCC-1]
          Length = 359

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 38/186 (20%)

Query: 124 CSLTCSFCYTGTQKLVR-NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           C L C FC        R ++                G       +E  +         + 
Sbjct: 114 CPLYCRFC------FRREHVGPG-------------GSVLDDAALEHALDWLRTHTGIHE 154

Query: 183 VMMGMGEPLC----NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           V+M  G+PL         + ++L        +     R+ ++  G +     + + +   
Sbjct: 155 VVMTGGDPLMLSARRMRAIMQALEGMDHIHTIRI-HSRVPVADPGRLD--DEMADALETT 211

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
            ++ L    N  R  L P  R         A R     +    +  + V+L+G+ND+P+ 
Sbjct: 212 RSMWLVVHVNHAR-ELTPQAR--------AAIRRVQARA--IPVLGQSVLLRGVNDTPQA 260

Query: 299 ALNLIK 304
              L++
Sbjct: 261 LEALLR 266


>gi|52080502|ref|YP_079293.1| putative pyruvate formate-lyase-activating enzyme [Bacillus
           licheniformis ATCC 14580]
 gi|52785882|ref|YP_091711.1| hypothetical protein BLi02131 [Bacillus licheniformis ATCC 14580]
 gi|319645536|ref|ZP_07999768.1| hypothetical protein HMPREF1012_00801 [Bacillus sp. BT1B_CT2]
 gi|52003713|gb|AAU23655.1| putative Pyruvate formate-lyase-activating enzyme [Bacillus
           licheniformis ATCC 14580]
 gi|52348384|gb|AAU41018.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317392422|gb|EFV73217.1| hypothetical protein HMPREF1012_00801 [Bacillus sp. BT1B_CT2]
          Length = 252

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 83/268 (30%), Gaps = 49/268 (18%)

Query: 98  GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154
           G    IET    +       V +Q GC + C FC+   T      + +T  EI+  V   
Sbjct: 3   GNIHSIETFGTVDGPGIRYVVFTQ-GCLMRCQFCHNADTWEIGTGKQMTVSEIVQDVQH- 60

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD---NVKKSLSIASDSMGLS 211
                            +P +      I + G GEPL        + K+         L 
Sbjct: 61  ----------------YLPFIQSSGGGITVSG-GEPLLQLPFLIELFKACKSLGIHTALD 103

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271
            S    + +   F   I  + +   ++L + L   +      L       P + +++  R
Sbjct: 104 SSGGCYS-AAPAFQEQIKELIQYTDLVL-LDLKHHNRKKHINLT----GMPNDHILEFAR 157

Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---KINLIPFNPWP------ 322
                 +   +   +V++ GI+D   D   L   + G  A   K+ ++P++         
Sbjct: 158 FLAE--HQVPVWIRHVLVPGISDIDADLTALGTFI-GTLANVQKVEVLPYHKLGVYKWEA 214

Query: 323 -GCEY-----LCSDQKDIVTFSECIKRS 344
            G +Y                   +   
Sbjct: 215 LGLDYPLKGVEPPSADRAENAYRLLTAH 242


>gi|87198947|ref|YP_496204.1| GTP cyclohydrolase subunit MoaA [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87134628|gb|ABD25370.1| GTP cyclohydrolase subunit MoaA [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 339

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 37/210 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C++C     + +                    +    E++  + +  + R +  I 
Sbjct: 31  CDLRCAYCMPERMEFLP-----------------KAEVLSLEELHRLSLHFIARGVRKIR 73

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           + G GEPL   D V   +      +G       +T++T+G      R+ E  G + A  L
Sbjct: 74  LTG-GEPLVRRDMV-DLVRALGRKLGDGL--DELTMTTNGT-----RLAEFAGDLAAAGL 124

Query: 244 HAVSNDL----RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
             ++  L    R     ++R+  L  +++            R+    V LKGIN    + 
Sbjct: 125 RRINVSLDTLDREAFARLSRRDVLPQVLEGIA--AAREAGLRVKINAVALKGIN--EDEI 180

Query: 300 LNLIKILKGIPAKINLI---PFNPWPGCEY 326
            +L++   G    + LI   P     G  +
Sbjct: 181 PSLVEWAHGQGHDMTLIEVMPLGEVEGDRF 210


>gi|332216583|ref|XP_003257432.1| PREDICTED: glypican-5 [Nomascus leucogenys]
          Length = 572

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 97/331 (29%), Gaps = 66/331 (19%)

Query: 63  LLNQHFSIIYPEIVDE--KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
            + + + I   + + +  + S   T K+L+   A      +E     I +    T  +  
Sbjct: 72  KMEERYQIAARQDMQQFLQTSS-STLKFLISRNAAAFQETLET---LIKQAENYTSILFC 127

Query: 121 QVGCSLTCSFCYTGTQKLV--------RNLTAEEILLQV------LLARSLLGDFPGCED 166
               ++      +  +            ++  EE + +       L+   L+        
Sbjct: 128 NTYRNMALEAAASVQEFFTDVGLYLFGADVNPEEFVNRFFDSLFPLVYNHLINPGVTDSS 187

Query: 167 IEGMVIPSVGRK-------ISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSFSK- 214
           +E      + R+       I   VM  MG  L       ++    + + + +  L FSK 
Sbjct: 188 LEYSECIRMARRDVSPFGNIPKRVMGQMGRSLLPSRTFLQALNLGIEVINTTDYLHFSKE 247

Query: 215 -------RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY--PLEM 265
                   +      G       +G  + VM    +H         L P    Y   LE 
Sbjct: 248 CSRALLKMQYCPHCQGLTLTKPCMGYCLNVMRGCLVHMA------ELNPHWHAYIRSLEE 301

Query: 266 LIDACRHYPGLSNARRITFEYVMLK---GINDSPRDALNLIKILKGIPAKINLIPFNPWP 322
           L DA               E+V+L     +ND+   A    + L        L   N   
Sbjct: 302 LSDAMH--------GTYDIEHVLLNFHLLVNDAVIQAHLNGQKL--------LEQVNRIC 345

Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353
           G       Q    +F +  ++ G  +  R  
Sbjct: 346 GRPVRTPTQSPRCSFDQSKEKHGMKTTARNS 376


>gi|303244214|ref|ZP_07330551.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
 gi|302485341|gb|EFL48268.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
          Length = 324

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 30/216 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CS  C +C         N T   I  Q       + D       +   + +   KI  I 
Sbjct: 35  CSYDCIYCQV---GRTINKT---IKRQEFY---KVEDIVSSVKKKVHNLKNNNEKIDYIT 85

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML-AIS 242
            +  GEP  +  N+KK +        L      IT ++  +  ++    + +   L ++ 
Sbjct: 86  YVPDGEPTLDI-NLKKEVEELKK---LDIPIAIITNTSLMYREDVR--NDLMDFNLVSLK 139

Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
           ++ V  +   I+   + +  L+ +++    +   S   +I  E ++L GIN +     + 
Sbjct: 140 VNTVEEEFWKIIDRPHDELNLKDILEGILTF-KESFKGKIITETMLLDGINYTDEVIEDT 198

Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIV 335
            K LK +      I+ IP              + I 
Sbjct: 199 AKFLKRLSPNKCYIS-IPI---------RPPAEKIK 224


>gi|125973301|ref|YP_001037211.1| RNA modification protein [Clostridium thermocellum ATCC 27405]
 gi|256003782|ref|ZP_05428770.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM
           2360]
 gi|281417504|ref|ZP_06248524.1| RNA modification enzyme, MiaB family [Clostridium thermocellum
           JW20]
 gi|229890498|sp|A3DDI9|MIAB_CLOTH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|125713526|gb|ABN52018.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium thermocellum
           ATCC 27405]
 gi|255992343|gb|EEU02437.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM
           2360]
 gi|281408906|gb|EFB39164.1| RNA modification enzyme, MiaB family [Clostridium thermocellum
           JW20]
 gi|316940466|gb|ADU74500.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM
           1313]
          Length = 480

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 62/198 (31%), Gaps = 31/198 (15%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVL 152
                     E V I  K      V+   GC+  C++C     +   R+ + ++IL +V 
Sbjct: 168 DVWDCDGQIAENVAIERKDGVKAWVTVMYGCNNFCTYCIVPYVRGRERSRSMDDILEEV- 226

Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212
             R L         + G  + S G+ I      G G            +   +   G+  
Sbjct: 227 --RMLGRQGFKEITLLGQNVNSYGKDI------GDGTSFAEL------IREVNKIPGI-- 270

Query: 213 SKRRITLSTSGFVPNIARVGEEIGVML------AISLHAVSNDLRNILVP-INRKYPLEM 265
              RI  +TS        + +++   +         LH         ++  +NRKY  E 
Sbjct: 271 --ERIRFTTSHP----KDLSDDLIYAMRDCEKVCEHLHLPFQAGSTRILKLMNRKYTKED 324

Query: 266 LIDACRHYPGLSNARRIT 283
            I+             +T
Sbjct: 325 YINLVAKIKENIPDIALT 342


>gi|260913742|ref|ZP_05920218.1| KamA family protein [Pasteurella dagmatis ATCC 43325]
 gi|260632281|gb|EEX50456.1| KamA family protein [Pasteurella dagmatis ATCC 43325]
          Length = 337

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 90/289 (31%), Gaps = 51/289 (17%)

Query: 73  PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
           P  +    S D   +               + +V     +R  L V    GC++ C +C 
Sbjct: 71  PLFLQVMSSADEFIQVEGFTTDPLEEQEAVVPSVLHKYHNRLLLMVKG--GCAVNCRYC- 127

Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
                  R+    +                     + +   ++  +I  ++  G G+PL 
Sbjct: 128 -----FRRHFPYAD------------NKGNKVNWQKALDYIAIRPEIEEVIFSG-GDPLM 169

Query: 193 NFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248
             D+    + K+L        L    R   +      P + ++  E      +  H    
Sbjct: 170 AKDHELNWLIKNLENIPHLQRLRIHTRLPVVIPQRITPELCKILSESRFQTVLVTH---- 225

Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVMLKGINDSPRDALNLIKILK 307
                   IN    ++  + A      L  A  +   + V+LK IND  +    L   L 
Sbjct: 226 --------INHPNEIDTTLSAA--IFKLKQAGVVLLNQSVLLKNINDDAQILKQLSDKL- 274

Query: 308 GIPAKINLIPF-----NPWPGCEYLCSDQKDIVTFSECIKR--SGYSSP 349
                IN++P+     +   G  +   + +  +   + ++   SGY  P
Sbjct: 275 ---FSINILPYYLHLLDKVEGASHFYIEDEKALNIYKILQSITSGYLVP 320


>gi|222055680|ref|YP_002538042.1| radical SAM protein [Geobacter sp. FRC-32]
 gi|221564969|gb|ACM20941.1| Radical SAM domain protein [Geobacter sp. FRC-32]
          Length = 286

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 80/231 (34%), Gaps = 36/231 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C +C        R+  A E     + +R L  +    +  E M    +G  I  + 
Sbjct: 35  CNIKCGYCS------RRHDCANE-SRPGVTSRLLTPEEAMVKVREVMASKVLGSMIKVVG 87

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241
           + G G+PL N +  +         +G  F      +ST+G      I  + E     L +
Sbjct: 88  IAGPGDPLANEETFETF-----RQVGEEFPHLIKCMSTNGLLLPEKIDLLQELGLHSLTV 142

Query: 242 SLHAVSNDLRNILV------------PINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
           +++A+   +   +             P   +  +   +   +          I    V++
Sbjct: 143 TINAIDPAVGAKIYSHILYHGRKLNGPQAVEMLIANQLAGLKKAAEF--GMTIKVNTVLI 200

Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL---CSDQKDIVT 336
            G+N+       + + +K + A + N++P    P  ++       +  +  
Sbjct: 201 PGVNEG--QVPLIAEKVKALGAFVMNVLPL--IPQADFAAHLPPTEAQLEE 247


>gi|94984412|ref|YP_603776.1| hypothetical protein Dgeo_0304 [Deinococcus geothermalis DSM 11300]
 gi|94554693|gb|ABF44607.1| Fe-S oxidoreductase, NifB/MoaA family containing PDZ domain
           [Deinococcus geothermalis DSM 11300]
          Length = 496

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 6/119 (5%)

Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPIN 258
           KSL I  D   LSF        T+    +I R+ +E    L +S+H  + +LR  L+   
Sbjct: 145 KSLYIMDDDYRLSFLYGSFVTLTNLTESDINRILDEHLSPLYVSVHTANQELRQDLMKW- 203

Query: 259 RKYPLEMLIDA-CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
            K  ++       R          +  + V++ G ND        I+ L   P   N+I
Sbjct: 204 WKLKVKDPQAVQIRTMIERLEPIDLYTQIVLVPGRNDR-EHLDETIEYLASRP---NVI 258


>gi|89256661|ref|YP_514023.1| hypothetical protein FTL_1362 [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315075|ref|YP_763798.1| hypothetical protein FTH_1327 [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502809|ref|YP_001428874.1| hypothetical protein FTA_1443 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010527|ref|ZP_02275458.1| radical SAM domain protein [Francisella tularensis subsp.
           holarctica FSC200]
 gi|290953399|ref|ZP_06558020.1| hypothetical protein FtulhU_03333 [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313360|ref|ZP_06803969.1| hypothetical protein FtulhU_03323 [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144492|emb|CAJ79801.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129974|gb|ABI83161.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253412|gb|ABU61918.1| lysine 2,3-aminomutase, YodO family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 328

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 56/262 (21%)

Query: 63  LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122
           LL Q       E++D+  S D                  ++  +      R  + + +Q 
Sbjct: 62  LLKQVLPTADEEVIDQAYSSD----------PLDEKNYNKVPGLLHKYHGR--VLLIAQT 109

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
            C++ C +C+        N+                   PG +D           +    
Sbjct: 110 ICAVHCRYCFRKEFDYKENI-------------------PGRKDWLQAFEYIANDQSIEE 150

Query: 183 VMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGFVPNIARVGEE-IG 236
           V++  G+PL N D + +     +   S    L   S+  + L        +  + E  + 
Sbjct: 151 VILSGGDPLLNNDEILEFFIENIQRISHIKRLRIHSRIPVVLPERMTTKLLKILSEHRLD 210

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
            +L I ++  +       +  N    L+ +           +   I  +  +LK IND  
Sbjct: 211 TVLVIHVNHPNE------LDGNVSKVLKEI---------HKHGIIILNQSTLLKDINDDA 255

Query: 297 RDALNLIKILKGIPAKINLIPF 318
                L   L  I AK+  IP+
Sbjct: 256 NVLYALSTKL--INAKV--IPY 273


>gi|156937582|ref|YP_001435378.1| radical SAM domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566566|gb|ABU81971.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 285

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 70/194 (36%), Gaps = 32/194 (16%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC  +C +CY  +                 + +         E +E  +  +   K+ N+
Sbjct: 30  GCPFSCLYCYATS----------------YIGKKFYPKKNFLERLECDLRKADRSKVINV 73

Query: 183 VMMGMGEPLCN--FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239
                  P      +  + +L +  D  G      ++ ++T G +    R  + I G+  
Sbjct: 74  STSSDPYPPIEERLELTRGALKLIRD-YGF-----KVLITTKGVL--FERDADLIEGIGA 125

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY-VMLKGINDSPRD 298
            +      ++    ++      PLE  ++A +    +S+   +      ++ G+NDS  D
Sbjct: 126 IMVTITTLDEELARVMEPGAPSPLER-LEAIKR---VSHRVPVGVRIDPVVPGVNDSEDD 181

Query: 299 ALNLIKILKGIPAK 312
              ++K+LK    K
Sbjct: 182 IKEMLKLLKNAGVK 195


>gi|222100781|ref|YP_002535349.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
 gi|221573170|gb|ACM23982.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
          Length = 598

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 69/202 (34%), Gaps = 39/202 (19%)

Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           V    GC+  C FC+              I  + +  RSL       E +          
Sbjct: 253 VEVARGCTRGCRFCHAS------------IYYRPVRERSLENIIENAEKMLKNTGYEEIS 300

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-- 235
            +S          L   D+ +  +    + +   FS+R+I +S       + R G EI  
Sbjct: 301 LLS----------LSTMDHTQ--IEKVVEELLRRFSERKIAISI--PSTRMDRFGVEIAS 346

Query: 236 ------GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289
                    L  +  A +  LRNI+     +  +   ++A R     S  RR+   Y M+
Sbjct: 347 RIASVRKTGLTFAPEAATQRLRNIINKNIEEQDIFSTLEAAR----KSGWRRVKL-YFMV 401

Query: 290 KGINDSPRDALNLIKILKGIPA 311
               ++  D   L+ +L  + A
Sbjct: 402 GLPGETEEDLKELVDLLGRVKA 423


>gi|78358321|ref|YP_389770.1| radical-activating enzyme [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220726|gb|ABB40075.1| Radical-activating enzyme [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 320

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 18/90 (20%)

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           H     +RN L+  N  + LE             N   +     +L+G+NDS  D   L+
Sbjct: 207 HYELTGVRNELILSNLTWLLE-------------NKHNVKIRVPLLRGVNDSEDDLRGLV 253

Query: 304 KILKGIPAKIN-----LIPFNPWPGCEYLC 328
           + L+      N     L+P++     +Y  
Sbjct: 254 EYLRPYQDYKNFKGIDLLPYHKMGVGKYKQ 283


>gi|307595521|ref|YP_003901838.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307550722|gb|ADN50787.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 252

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 80/219 (36%), Gaps = 31/219 (14%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+ TC +C         +L  +E     L+     G     E +  +    +   +   
Sbjct: 23  GCNFTCPWCIRRLTPWDHHLENKE-----LVRLKFQGLLNIDEFLSIIDDAMINYGLEET 77

Query: 183 VMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--- 238
           V+ G  EP    D +  ++     D       K RI L T+ +  +   + E        
Sbjct: 78  VLGGE-EP--TIDPMLPTIIRELRDR------KLRIRLLTNAYEISNELLNELSQCTNCE 128

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS--- 295
           + I +  +  D    +    +  PLE ++   R      +  R+ FE V++  +ND+   
Sbjct: 129 VVIGIKTLDPDK--HIKYTGK--PLEPVLRNIRRLI--KSNVRVIFETVLIPSLNDAKDI 182

Query: 296 PRDALNLIKILKGIPAKIN-LIPFNPWPGCEYLCSDQKD 333
              A  L  I++     I+ LIP    PG  +    +++
Sbjct: 183 EEIAKYLASIVRDPVLIIDPLIP---IPGTPWRRPTREE 218


>gi|224536031|ref|ZP_03676570.1| hypothetical protein BACCELL_00895 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522356|gb|EEF91461.1| hypothetical protein BACCELL_00895 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 439

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 62/206 (30%), Gaps = 21/206 (10%)

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTG-TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
             R    +  Q GC   CS+C     +   RN T   ++ Q   AR    +      + G
Sbjct: 146 GDRTRYFLKVQDGCDYFCSYCTIPFARGRSRNGTIASMVEQ---ARQAAAEGGKEIVLTG 202

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229
           + I   G           GE   N     K+L           S     L T   +    
Sbjct: 203 VNIGDFG--------KTTGETFFNL---VKALDEVEGIERYRISSIEPNLLTDEII-EFV 250

Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM- 288
                      I L + S+++   L  + R+Y  E+     R    +     I  + ++ 
Sbjct: 251 SHSRSFMPHFHIPLQSGSDEV---LKLMRRRYDTELFASKVRKVKEVMPDAFIGVDVIVG 307

Query: 289 LKGINDSP-RDALNLIKILKGIPAKI 313
            +G  D     A   IK L      +
Sbjct: 308 TRGETDEYFEQAYEFIKSLDVTQLHV 333


>gi|146296194|ref|YP_001179965.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409770|gb|ABP66774.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 231

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 80/234 (34%), Gaps = 45/234 (19%)

Query: 96  CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLA 154
            +   ++I TV  P+K   T C     GC+ +C FCY         N   + I  + L  
Sbjct: 1   MLVDFMKISTVDYPKKIAAT-CFFG--GCNFSCPFCYNSQLVNFKGNFMDDSIFFEYLDK 57

Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
           R  +                    +  + + G GEP  N + + + +        L    
Sbjct: 58  RKGI--------------------VDAVCITG-GEPTLNEEYLTEFIKKIKQRDLL---- 92

Query: 215 RRITLSTSGFVPN-IARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
             + L T+G  P  + R+ +  +   +A+ + A          P    +     +D  R 
Sbjct: 93  --VKLDTNGSRPEVLQRLLDAGLLDYVAMDVKAPLEK-----YPQITGFS---EVDKIRR 142

Query: 273 YPGLSNARRITFEYVMLKGIN-DSPRDALNLIKILKGIPAKINLI-PFNPWPGC 324
              +     I +E+      N  +  D LN+ ++LK     +  I P+   P  
Sbjct: 143 SIEILKNSNIDYEFRTTVNKNLHTVEDILNIARLLKDAKLYV--IKPYKYTPEV 194


>gi|257064441|ref|YP_003144113.1| glycyl-radical enzyme activator family protein [Slackia
           heliotrinireducens DSM 20476]
 gi|256792094|gb|ACV22764.1| glycyl-radical enzyme activator family protein [Slackia
           heliotrinireducens DSM 20476]
          Length = 311

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 48/144 (33%), Gaps = 16/144 (11%)

Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDA 269
             S   I  +  G    +  +  +  V  +   L ++ +++            +   +  
Sbjct: 159 GISTC-IDTTGYGDAEALLDLASKDSVTTVLYDLKSIDDEVHRE-YTGVGNETILANLRL 216

Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPW------- 321
                      +I     ++KG+ND         ++ + +   ++NL+P++         
Sbjct: 217 LA--ADERTRSKIVMRMPLIKGVNDDEDMIERTAELYRELGITQVNLLPYHNLGVGKARN 274

Query: 322 ---PGCEYLCSDQKDIVTFSECIK 342
                 E+   D+K +   +E ++
Sbjct: 275 VGRSQREFEAPDEKRMAAIAERLQ 298


>gi|269925522|ref|YP_003322145.1| protein of unknown function DUF512 [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789182|gb|ACZ41323.1| protein of unknown function DUF512 [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 487

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRN 252
           N + ++ SL I  D    SF        T+    +  R+ E+    L +S+H    DLR 
Sbjct: 100 NREGMRDSLYIRDDDYRYSFLFGNFVTLTNLTPSDWRRLEEQRLSPLYVSVHTTDPDLRR 159

Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            L+   +   +   +   R         ++  + V+  G+ND P+
Sbjct: 160 RLLGYPKAPDILEQLARLREI-----GIQVHTQLVLCPGLNDGPQ 199


>gi|187924690|ref|YP_001896332.1| radical SAM protein [Burkholderia phytofirmans PsJN]
 gi|187715884|gb|ACD17108.1| Radical SAM domain protein [Burkholderia phytofirmans PsJN]
          Length = 356

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            L + L  V+  LR  ++P     PL   ++A +    +    +++  Y++  G+ DS  
Sbjct: 220 TLGMHLEVVTPALRERIMPGKASVPLSRYMEAFKSAVAVFGRGQVS-TYIL-AGLGDSAA 277

Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPIRTPR 354
             L + + L  +     ++PF P  G           + + +  + +     ++ +R+  
Sbjct: 278 AILAMSRELIELGVYPFVVPFVPISGTPLEDHPAPTPEFMKSVLQPLGGMLNAAAMRSS- 336

Query: 355 GLDILAACG 363
             DI A CG
Sbjct: 337 --DIKAGCG 343


>gi|169350284|ref|ZP_02867222.1| hypothetical protein CLOSPI_01028 [Clostridium spiroforme DSM 1552]
 gi|169293067|gb|EDS75200.1| hypothetical protein CLOSPI_01028 [Clostridium spiroforme DSM 1552]
          Length = 298

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 34/155 (21%)

Query: 216 RITLSTSGFVPN--IARVGEEIGVMLAISLHAVSND------LRNILVPINRKYPLEMLI 267
            + + T+G++ +     +     ++L    H  +N       + N L+  N  + ++  +
Sbjct: 156 HVAIETTGYIQSDIFRELAVMFDLLLFDVKHYDTNKHYEGTKVHNELIIDNLTWAIDHGL 215

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY 326
                 P             ++   NDS  DA+NL ++L  + A K+ L+PF+ +   +Y
Sbjct: 216 TLLPRIP-------------VIPDFNDSLNDAINLSELLIKVKAKKVQLLPFHQFGEKKY 262

Query: 327 ------------LCSDQKDIVTFSECIKRSGYSSP 349
                            +D+  + +     G    
Sbjct: 263 ELLQKEYALKNKKALYPEDLKAYQKIFLDKGIDCF 297


>gi|150400746|ref|YP_001324512.1| radical SAM domain-containing protein [Methanococcus aeolicus
           Nankai-3]
 gi|150013449|gb|ABR55900.1| Radical SAM domain protein [Methanococcus aeolicus Nankai-3]
          Length = 446

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 69/216 (31%), Gaps = 25/216 (11%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165
           + ++    + V    GC++ C FC    G     R                   D     
Sbjct: 113 LIDRGTNIIQVRGLSGCNINCPFCSVDEGKHSKTR-------------KNDYYVDMDYLV 159

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
           +    ++   G K     + G GEP   +  + + +   ++          +  +     
Sbjct: 160 EEYKKIVEFKGNKRIEAHLDGQGEPSL-YYPLPELIQNLNEINKKGDGLVSMQSNGVNLS 218

Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
             +    EE G+          +++++ ++  ++ Y +  ++D   +         +T  
Sbjct: 219 YKLIDELEEAGLHRINLSINAIDEIKSRMLSGSKTYDINKILDIAEYIKNSKIHLLVT-- 276

Query: 286 YVMLKGINDSP-----RDALNLIKILKGIPAKINLI 316
            ++L  IND         A+ L +  K     IN I
Sbjct: 277 SLLLPNINDEEFKKVIDFAVELEQ--KNPQNIINPI 310


>gi|89894341|ref|YP_517828.1| hypothetical protein DSY1595 [Desulfitobacterium hafniense Y51]
 gi|123091791|sp|Q24X58|MIAB_DESHY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
           miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
 gi|89333789|dbj|BAE83384.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 447

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 75/210 (35%), Gaps = 25/210 (11%)

Query: 104 ETVYIPEKSRGTLCVSSQVGCSLTCSFCYT-GTQKLVRNLTAEEILLQVLLARSLLGDFP 162
           E+V +  K +    V+   GC+  C++C     +   R+   EEIL ++   R+L+    
Sbjct: 142 ESVLLAAKGKLKAYVNISYGCNNFCTYCIVPHVRGRERSRQPEEILAEI---RALVETGC 198

Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
               + G  + S G+ +               D       +  D   +     R+   TS
Sbjct: 199 REVTLLGQNVNSYGQDL---------------DRAYDFADLLKDVDSID-GLWRVRFMTS 242

Query: 223 GFVPNIARVGEEI--GVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNA 279
                  ++ E I  G  L   +H       + ++  +NRKY  E  +        +   
Sbjct: 243 HPKDLSDKLIETIAAGTHLCEHIHLPFQAGSDEILKGMNRKYTREYYLSRIAQIKVIIPQ 302

Query: 280 RRITFEYVM-LKGINDSP-RDALNLIKILK 307
             +T + ++   G  +      L LI+ ++
Sbjct: 303 VSLTTDIIVGFPGETEEDFEQTLELIRQVR 332


>gi|262067515|ref|ZP_06027127.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378778|gb|EFE86296.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium
           periodonticum ATCC 33693]
          Length = 243

 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 82/241 (34%), Gaps = 46/241 (19%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N+   E+            ++    +     +  V   ++  
Sbjct: 27  GCPLRCLYCH--------NVDTWELKD---------KNYIYTPNEILAELNKVKAFLTGG 69

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
           +    GEPL     + +         G+        L TSG++      +V E   ++L 
Sbjct: 70  ITASGGEPLMQASFILELFK-LCKENGI-----HTALDTSGYIFNDQAKKVLEYTDLVL- 122

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + +  +  D+   L  +     LE  ++  ++   ++    +   YV++ G  D  +D  
Sbjct: 123 LDIKHIDKDMYKKLTSV----DLEPTLNFIKYLQEINK--PVWIRYVLVPGYTDDIKDLN 176

Query: 301 NLIKILKGIPA--KINLIPFNPW-------PGCEYL-----CSDQKDIVTFSECIKRSGY 346
           +  K +       +++++PF+            +Y         ++ I    E  K+   
Sbjct: 177 DWAKFVSQFDVVRRVDILPFHQMAIYKWEKTNRDYKLKDVSTPTKEQIQKAEEIFKKYNL 236

Query: 347 S 347
            
Sbjct: 237 P 237


>gi|307718850|ref|YP_003874382.1| hypothetical protein STHERM_c11670 [Spirochaeta thermophila DSM
           6192]
 gi|306532575|gb|ADN02109.1| hypothetical protein STHERM_c11670 [Spirochaeta thermophila DSM
           6192]
          Length = 291

 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 63/199 (31%), Gaps = 40/199 (20%)

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
            GCS  C FC    Q         EI  +         + P    I              
Sbjct: 86  FGCSFKCPFC----QNF-------EISQEYRTYLRTALEIPTERLIHQAKAYHS----IG 130

Query: 182 IVMMGMGEPLCNFDNVKK-SLSIASDSMGLSFSKRRITLSTSGFVPN--IARVGEEIGVM 238
           I      EPL +F+ V + ++              +  L T+G++       + E +   
Sbjct: 131 IAYTYS-EPLIHFEYVMEVAVEARRH-------GLKNVLVTNGYINPEPSDELLEVVDAA 182

Query: 239 LAISLHAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
             + L + +++  R  +     K  LE ++         +    +    +++ G NDS  
Sbjct: 183 -NVDLKSFNDEFYRKEI-----KGSLEPVLAFIE---KAAKKIHVEVTTLLIPGKNDSEE 233

Query: 298 D----ALNLIKILKGIPAK 312
           +    A  L  I K IP  
Sbjct: 234 EVRSIARRLAGIRKDIPLH 252


>gi|78355585|ref|YP_387034.1| radical SAM domain-containing protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78217990|gb|ABB37339.1| radical SAM domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 329

 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 35/193 (18%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CS+ C +C  G      ++   E           +      +++      + G  + ++ 
Sbjct: 29  CSMDCLYCEVGRT----DILTCE-------RAPYVPAATILDELAAWRNENPGTHVDHVT 77

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR----------ITLSTSGFVPNIARVGE 233
           + G GEP              +  MG   S  R          +T ST     ++     
Sbjct: 78  LGGSGEP------------TLNSDMGRIISGCRTILPDVPVAVLTNSTLLHRKDVRDEAA 125

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
              V+L      V  + R  L    ++     +  A   +       RI  E ++ KGIN
Sbjct: 126 CADVVLPSLDTLVETEFRA-LNRPEKELTASGVAAALLTF-RKEYGGRIFLEILLSKGIN 183

Query: 294 DSPRDALNLIKIL 306
           DS  +   L + +
Sbjct: 184 DSQENLALLRQFV 196


>gi|307595524|ref|YP_003901841.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307550725|gb|ADN50790.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 310

 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 74/190 (38%), Gaps = 25/190 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C +C        R++              L   +P  + I+ + I +  R    + 
Sbjct: 28  CNFNCIYC---QLGRTRHV-----------INDLRMFYPPEDIIKELEIATRTRDYDYLT 73

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG---FVPNIARVGEEIGVMLA 240
            +G GEP   +  + K +  A ++       + + + T+G      N+     E+ V + 
Sbjct: 74  FIGDGEPTL-YAGLGKLIQWARNNQ-----DKPLAILTNGAKLIDENVRSWLSELNV-VK 126

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           +S  A S     ++   +R+   +  I+    +  + + + I  E ++++G+ND+  +  
Sbjct: 127 VSTDAGSEKTFRLINRPHREITFDRFIEGIERFREIFSGQ-IWTEVMLVQGVNDNEDEMK 185

Query: 301 NLIKILKGIP 310
            +   ++   
Sbjct: 186 RIGNTMRRYK 195


>gi|288931480|ref|YP_003435540.1| radical SAM protein [Ferroglobus placidus DSM 10642]
 gi|288893728|gb|ADC65265.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642]
          Length = 382

 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 19/189 (10%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           I ++    L V    GC+L C FC     +  +    + I+             P     
Sbjct: 77  IIDRGTNLLQVRPITGCNLNCIFCSVDEGRSSKTKKTDFIVD------------PDYLLE 124

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
           E   I     +   + + G  EP+  +  +K+ L   ++      S   +  + +     
Sbjct: 125 ELRKICEFKGRGVEVHIDGQAEPML-YPYMKQFLEGVAEIK--EVSVVSMQTNGTLISEK 181

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287
           +    E I     +S+ A+  +L N +     KYPL+ +++A        +   +    V
Sbjct: 182 VVEEFEGILDRFNVSISALDQELANKIY--GTKYPLKKVLEAVEAIAN--SKIDLLIAPV 237

Query: 288 MLKGINDSP 296
            L GIND  
Sbjct: 238 WLPGINDEE 246


>gi|317046674|ref|YP_004114322.1| lysine 2,3-aminomutase YodO family protein [Pantoea sp. At-9b]
 gi|316948291|gb|ADU67766.1| lysine 2,3-aminomutase YodO family protein [Pantoea sp. At-9b]
          Length = 342

 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 72/224 (32%), Gaps = 57/224 (25%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY------TGTQKLVRNLTAEEI 147
                    +  +    ++R  L V    GC++ C +C+         Q   RN  A   
Sbjct: 92  DPLDEQSSVVPGLLHKYRNRALLLVKG--GCAVNCRYCFRRHFPYQDNQGNKRNWQA--- 146

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSI 203
                 A   + D P               ++  I+  G G+PL   D+    + ++L  
Sbjct: 147 ------AIDYIADHP---------------ELDEIIFSG-GDPLMAKDHELAWLIEALEK 184

Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263
                 L     R+ +               I   +   L  +  + R  ++ ++     
Sbjct: 185 LPHLKRLRI-HSRLPV--------------VIPARITEGLCQLLANTRLQVLLVSHINHA 229

Query: 264 EMLIDACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKI 305
           + + D  R+   +     +T   + V+L+G+ND    A  L  +
Sbjct: 230 QEIDDELRYGMQMLKRAGVTLLNQSVLLRGVNDK---AQQLADL 270


>gi|257126689|ref|YP_003164803.1| glycyl-radical enzyme activating protein family [Leptotrichia
           buccalis C-1013-b]
 gi|257050628|gb|ACV39812.1| glycyl-radical enzyme activating protein family [Leptotrichia
           buccalis C-1013-b]
          Length = 272

 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 10/108 (9%)

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-R 281
           G   +  ++ +     +   +  + N+        ++KY         ++   LS    R
Sbjct: 137 GNYKDFEKLAKLTD-TILFDIKHMDNEK-------HKKYTAVSNEIILKNLTKLSEWHKR 188

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYLC 328
           I   +  +KGIND  ++     K LK +    +N++P++     +Y  
Sbjct: 189 IIMRFPFIKGINDDEKNIHETAKFLKKLNLLEVNILPYHTMGLEKYKK 236


>gi|254372685|ref|ZP_04988174.1| hypothetical protein FTCG_00250 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570412|gb|EDN36066.1| hypothetical protein FTCG_00250 [Francisella novicida GA99-3549]
          Length = 328

 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 44/215 (20%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
            K  G + + +Q  C++ C +C+        N+                   PG +D   
Sbjct: 97  HKYHGRVLLIAQTSCAVHCRYCFRKEFDYKENI-------------------PGRKDWLQ 137

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGF 224
                   +    V++  G+PL N D + +     +   +    L   S+  + L     
Sbjct: 138 AFEYIANDQSIEEVILSGGDPLLNNDEILEFFIENIQRIAHIKRLRIHSRIPVVLPERMT 197

Query: 225 VPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
              +  + E  +  +L I ++  +       +  N    L+ +           +   I 
Sbjct: 198 TKLLKILSEHRLDTVLVIHVNHPNE------LDGNVSKVLKEI---------HKHGIIIL 242

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318
            +  +LK IND       L   L  I AK+  IP+
Sbjct: 243 NQSTLLKDINDDANVLYALSTKL--INAKV--IPY 273


>gi|56416128|ref|YP_153203.1| hypothetical protein SPA4150 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197365054|ref|YP_002144691.1| hypothetical protein SSPA3854 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56130385|gb|AAV79891.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197096531|emb|CAR62140.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 342

 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 63/205 (30%), Gaps = 45/205 (21%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
               ++R  L V    GC++ C +C        R+    E                    
Sbjct: 105 LHKYQNRALLLVKG--GCAVNCRYC------FRRHFPYAE------------NQGNKRNW 144

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPL----CNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
              +   +V  ++  I+  G G+PL       D +   L        L            
Sbjct: 145 TVALEYIAVHPELDEIIFSG-GDPLMAKDHELDWLLTQLEAIKHVKRLRI---------- 193

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
                 +R+   I   +   L A  +  R  ++ +N       + +A        +   +
Sbjct: 194 -----HSRLPIVIPARITDELVARFDQSRLQILLVNHINHANEVDEAFCLAMKKLHHVGV 248

Query: 283 TF--EYVMLKGINDSPRDALNLIKI 305
           T   + V+L+G+ND+   A  L  +
Sbjct: 249 TLLNQSVLLRGVNDN---AQTLANL 270


>gi|95929282|ref|ZP_01312026.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
 gi|95134780|gb|EAT16435.1| Radical SAM [Desulfuromonas acetoxidans DSM 684]
          Length = 287

 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 30/241 (12%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
            K+   + +    GC++ C FC       V            + +R L  +         
Sbjct: 21  HKNSARIHLPVAPGCNIKCGFCE-RKFDCVNESRPG------VTSRVLTPEQALERLELV 73

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKS--LSIASDSMGLSFSKRRITLSTSGFVPN 227
           +  P  G K+  + + G G+PL N +  K    +  A   + L  S   + L  +  +  
Sbjct: 74  LRHPVAGPKMKVVGIAGPGDPLANENTFKTFDLVRAAHPELTLCLSTNGLMLPEN--MDR 131

Query: 228 IARVG-EEIGVMLAISLHAVSNDLRNILVPINRK--------YPLEMLIDACRHYPGLSN 278
           I  +G   + V +          +   +    +K        + L+  ++          
Sbjct: 132 IKDLGIHSLTVTMNALSAQSGAQVYEWIHYQGKKLQGEAAAGFLLDKQLEGVE--LAAKA 189

Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY---LCSDQKDI 334
              +   +V + GIND     L+L    + + A  +N+IP    P  ++       + +I
Sbjct: 190 GMLVKINHVYMPGINDHET--LDLAVTARKLGATMMNIIPL--IPLGKFAGMEQPSKDEI 245

Query: 335 V 335
            
Sbjct: 246 D 246


>gi|297197550|ref|ZP_06914947.1| formate acetyltransferase [Streptomyces sviceus ATCC 29083]
 gi|297146770|gb|EFH28330.1| formate acetyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 1138

 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 14/82 (17%)

Query: 279  ARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC-------- 328
              R+   YV++ G  D      +L   + G+ +  +++++PF+     +Y          
Sbjct: 1054 GVRMWIRYVLVPGWTDDAESVESLADFVAGLRSVDRVDVLPFHKLGASKYEALGLPFPLR 1113

Query: 329  ----SDQKDIVTFSECIKRSGY 346
                  +  +    E  +  G 
Sbjct: 1114 DTPTPARDAVERVRERFRAHGL 1135


>gi|57864872|gb|AAW57046.1| nitrogen fixation protein B [cyanobacterium endosymbiont of
           Rhopalodia gibba]
          Length = 483

 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 90/239 (37%), Gaps = 42/239 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C++C         N +   ++ +VL         P     + +VI     +++ + 
Sbjct: 72  CNIQCNYCNRKYD--CANESRPGVVSEVLT--------PEEAAHKALVIAGKIPQMTVLG 121

Query: 184 MMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
           + G G+PL N  +  ++  + ++    + L  S   + L+   ++  I  +  +  V L 
Sbjct: 122 IAGPGDPLANPKHTFRTFELVAEQAPDIKLCLSSNGLMLTE--YIDKIKELKID-HVTLT 178

Query: 241 ISLHAVSNDLRNILVPIN----RKYP--------LEMLIDACRHYPGLSNARRITFEYVM 288
           I++  V   +   + P      ++Y         LE  +++           ++    VM
Sbjct: 179 INM--VDPKIGEKIYPWVRYNRKRYKGIEGVKILLEKQMESLDALREADILCKVN--SVM 234

Query: 289 LKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPG-------CEYLCSDQKDIVTFSE 339
           + G+ND  +    + ++++   A + N++P    P                K++    +
Sbjct: 235 IPGVND--QHLAEVNEVIRAKGAFLHNIMPLISAPEHGTHFGLTGQRGPSPKELKAVQD 291


>gi|125973026|ref|YP_001036936.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
           ATCC 27405]
 gi|256004823|ref|ZP_05429798.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
           DSM 2360]
 gi|281417236|ref|ZP_06248256.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
           JW20]
 gi|125713251|gb|ABN51743.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
           ATCC 27405]
 gi|255991273|gb|EEU01380.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
           DSM 2360]
 gi|281408638|gb|EFB38896.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
           JW20]
 gi|316940739|gb|ADU74773.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum
           DSM 1313]
          Length = 238

 Score = 37.6 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 72/235 (30%), Gaps = 44/235 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+       R+              +     P     E M      +     
Sbjct: 29  GCPLRCIYCH------NRDT---------WDVNAGSEYTPRQVIDEMMKYIDYIKVSGGG 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLA 240
           + +  GEP+   D V +   +A +            L T+GF  +  + R+ +   ++L 
Sbjct: 74  ITVTGGEPVLQADFVAEVFRLAKEQ------GVHTALDTNGFADIEKVERLIKYTDLVL- 126

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + +     D   I+  ++        I     Y        I   YV++ G  D   D  
Sbjct: 127 LDIKHAREDKHKIITGVSN-----EKIKRFALYLS-DQGVPIWIRYVLVPGYTDDEDDLK 180

Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFSECI 341
                +K +    KI ++P++     ++                 +++      +
Sbjct: 181 MAADFIKKLKTVEKIEVLPYHNMGAYKWEKLGQKYMLEGVKGPSAQEVEKAKRIL 235


>gi|171780238|ref|ZP_02921142.1| hypothetical protein STRINF_02026 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281586|gb|EDT47021.1| hypothetical protein STRINF_02026 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 262

 Score = 37.6 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 76/237 (32%), Gaps = 51/237 (21%)

Query: 123 GCSLTCSFCYT-GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           GC + C +C+   T  L  N + E  +  VL        F G                  
Sbjct: 35  GCKMRCQYCHNPDTWALETNNSRERTVDDVLAEALRYRHFWGENG--------------G 80

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           I + G GE +   + V     + + +  L       TL T GF        +       +
Sbjct: 81  ITVSG-GEAMLQIEFVTA---LFTKAKELGI---HCTLDTCGFT-----FRDTPEYHKIV 128

Query: 242 S-LHAVSNDLRNILVPINRKYPL------EMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             L AV++ +   L  IN K  +         I A   Y        +   +V++ G+ D
Sbjct: 129 DKLLAVTDLVLLDLKEINPKQHIVVTRQPNTNILAFARYLS-DKGVPVWIRHVLVPGLTD 187

Query: 295 SPRDALNLIKI---LKGIPAKINLIPFNPWPGCEY------------LCSDQKDIVT 336
              D + L K    LK +  K  ++P++     ++                ++ +  
Sbjct: 188 FDEDLIELGKFVETLKNVD-KFEILPYHTLGEFKWRELGIPYTLEGVKPPTRERVQN 243


>gi|306843858|ref|ZP_07476453.1| molybdenum cofactor biosynthesis protein A [Brucella sp. BO1]
 gi|306275613|gb|EFM57337.1| molybdenum cofactor biosynthesis protein A [Brucella sp. BO1]
          Length = 344

 Score = 37.6 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 43/217 (19%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C       +                    D    E+++ +    + + +  + 
Sbjct: 35  CDFRCTYCMAEHMTFLP-----------------KKDLLTLEELDRLCSVFIEKGVRKLR 77

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-------RITLSTSG--FVPNIARVGEE 234
           + G GEPL     V+K        +G + S+         +TL+T+G         + + 
Sbjct: 78  LTG-GEPL-----VRK---NIMHLIG-NLSRHLKSGALDELTLTTNGSQLARFAGELADC 127

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               + +SL  ++ +    +        +   IDA R          +    V LK  ND
Sbjct: 128 GVRRINVSLDTLNPEKFRTITRWGDLSRVLEGIDAAR-----KAGIHVKINAVALKDFND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +      LI+   G    + LI   P    E+  +DQ
Sbjct: 183 AE--IPELIRWAHGRGMDVTLIETMPMGEIEFDRTDQ 217


>gi|300870181|ref|YP_003785052.1| MiaB-like tRNA modifying enzyme [Brachyspira pilosicoli 95/1000]
 gi|300687880|gb|ADK30551.1| MiaB-like tRNA modifying enzyme [Brachyspira pilosicoli 95/1000]
          Length = 415

 Score = 37.6 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 68/204 (33%), Gaps = 29/204 (14%)

Query: 118 VSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           +  Q GC + CS+C     +   ++L   +I   + +A                      
Sbjct: 131 LKIQDGCEVFCSYCIVSRVRGKHKSLEPNKIYEAIKIANDYNY----------------- 173

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIAS----DSMGLSFSKRRITLSTSGFVPNIARVG 232
                IV+ G+     NF+N  K   I       S       R  ++    F   +  + 
Sbjct: 174 ---KEIVLTGLNLGSYNFNNEIKFADILKNILEHSSKYGIRIRLSSVEPIYFDDELINLF 230

Query: 233 EEIGVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNARRITFEYVM--L 289
           +   V L    H       N ++  +NR+Y  E  + +      ++    I+ + ++   
Sbjct: 231 KNKDV-LCPHAHIPLQSGSNKILKLMNRRYTREEYLTSIEKLYKVNPNMAISTDVMVGFP 289

Query: 290 KGINDSPRDALNLIKILKGIPAKI 313
           +  ND   D  NL +  K I   +
Sbjct: 290 EEENDDFNDTYNLCEKSKFIKMHV 313


>gi|315221939|ref|ZP_07863850.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus anginosus
           F0211]
 gi|315188905|gb|EFU22609.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus anginosus
           F0211]
          Length = 265

 Score = 37.6 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 37/215 (17%)

Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C     +       R  T E+IL + L  R   G   G              
Sbjct: 37  GCKMRCQYCHNPDTWAMETNNSRERTVEDILQEALRYRGFWGKKGG-------------- 82

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS--FSKRRITL-STSGFVPNIARVGEE 234
               I + G GE L    N   +L   +  +G+        +   +T  ++    R+ E 
Sbjct: 83  ----ITVSG-GEALLQI-NFVTALFTKAKELGIHCTLDTCAMPFRNTPEYLKVFDRLLEV 136

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             ++L + +  +++     +     K  LE     C  Y        +   +V++  + D
Sbjct: 137 TDLVL-LDIKEINDAQHRFVTGHTNKNILE-----CAKYLS-DKGVPMWIRHVLVPTLTD 189

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
              D   L + +K +    K  ++P++     ++ 
Sbjct: 190 RDDDLKELGEFVKTLKTVDKFEVLPYHTMGEFKWR 224


>gi|254488854|ref|ZP_05102059.1| elongator protein 3/MiaB/NifB [Roseobacter sp. GAI101]
 gi|214045723|gb|EEB86361.1| elongator protein 3/MiaB/NifB [Roseobacter sp. GAI101]
          Length = 374

 Score = 37.6 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 14/141 (9%)

Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288
            R+ +     L + L  V+  LR  ++P   +  LE   D+      +    +++  Y++
Sbjct: 219 RRMKDAGIDSLGMHLEVVTPALREQIMPGKAQVSLEKYFDSFAAAVEVFGWGQVS-TYIL 277

Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348
             G+ D+    L++ + L  I     ++PF P  G     S       F       G   
Sbjct: 278 -AGLGDTQEAILSICERLTAIGVYPFVVPFVPVTGTPLE-SHPAPTSAFM-----HGVLG 330

Query: 349 PI------RTPRGLDILAACG 363
           P+      R  R  DI A CG
Sbjct: 331 PLSQMIVDRGMRAEDIKAGCG 351


>gi|254302663|ref|ZP_04970021.1| [formate-C-acetyltransferase]-activating enzyme [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322855|gb|EDK88105.1| [formate-C-acetyltransferase]-activating enzyme [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 243

 Score = 37.6 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 80/214 (37%), Gaps = 34/214 (15%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N+   E+            ++    +     +  V   ++  
Sbjct: 27  GCPLRCLYCH--------NVDTWELKD---------KNYIYTPEEILAELNKVRAFLTGG 69

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
           +    GEPL     + +         G+        L TSG++      +V E   ++L 
Sbjct: 70  ITASGGEPLFQASFILELFK-LCKENGI-----HTALDTSGYIFNDQAKKVLEYTDLVL- 122

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + +  +  D+   L  +     LE  ++  ++   ++    +   YV++ G  D  +D  
Sbjct: 123 LDIKHIDKDMYKKLTSV----DLESTLNFIKYLQEINK--PVWIRYVLVPGYTDDIKDLN 176

Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYLCSDQK 332
           +  K +       +++++PF+     ++  ++++
Sbjct: 177 DWAKFVSQFDVVKRVDILPFHQMAIYKWEKTNRE 210


>gi|315650922|ref|ZP_07903963.1| molybdenum cofactor biosynthesis protein A [Eubacterium saburreum
           DSM 3986]
 gi|315486836|gb|EFU77177.1| molybdenum cofactor biosynthesis protein A [Eubacterium saburreum
           DSM 3986]
          Length = 323

 Score = 37.6 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 32/183 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C++C   T+K+   L+ +EI  QV  A S  G                   I+   
Sbjct: 20  CNFRCTYCMPETKKVDDTLSLDEIY-QVAFAASKCG-------------------ITKFK 59

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           + G GEPL   D +   +    D      S + IT++T+GF   + +  + +      S+
Sbjct: 60  ITG-GEPLV-RDGIVDFIRRLHDID----SVKDITMTTNGF--YLYKYAKSLADAGLSSV 111

Query: 244 HAVSNDLRNILV-PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN-DSPRDALN 301
           +   + L+      I     L  ++                   V+ +G+N D   D + 
Sbjct: 112 NISLDSLKKERFIKITGVDALSDVVKGINE--AKRAGLSTKINTVLQRGVNEDELFDIIG 169

Query: 302 LIK 304
           L K
Sbjct: 170 LAK 172


>gi|154151787|ref|YP_001405405.1| radical SAM domain-containing protein [Candidatus Methanoregula
           boonei 6A8]
 gi|154000339|gb|ABS56762.1| Radical SAM domain protein [Methanoregula boonei 6A8]
          Length = 332

 Score = 37.6 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 83/253 (32%), Gaps = 56/253 (22%)

Query: 112 SRGT--LCVSSQVGCSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
            RGT  L V    GC+L C FC          R  + E  L  +L A   +  F G    
Sbjct: 24  DRGTSLLQVRPSCGCNLNCPFCSVDAGPCSKTRATSYEVELDYLLSAVEEIAPFKGTGVE 83

Query: 168 EGMVIPSVGRKISNIVMMGMGEPL--CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225
             +  P              GEPL       +  +L           +   ++L T+G +
Sbjct: 84  CHIDSP--------------GEPLMYARLPELVAALKAID-------AVSTVSLQTNGTL 122

Query: 226 ---PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
                IA + +     + +SLHA+   L   L      + +E + +A R     S    I
Sbjct: 123 LDERKIAALADAGLDRMNLSLHALDPALAREL-AGVDWFDIEKVTEAARAVAASSMDLLI 181

Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIK 342
              Y  + GIND         +I K       LI F    G          I  F     
Sbjct: 182 APVY--MPGIND--------AEIPK-------LIAFARECGAG-KRFPPLGIQKFERY-- 221

Query: 343 RSGYSSPIRTPRG 355
           + G     RTP+G
Sbjct: 222 KYG-----RTPKG 229


>gi|14141682|dbj|BAB55635.1| pyruvate formate-lyase activating enzyme [Streptococcus bovis]
          Length = 262

 Score = 37.6 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 76/237 (32%), Gaps = 51/237 (21%)

Query: 123 GCSLTCSFCYT-GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           GC + C +C+   T  L  N + E  +  VL        F G                  
Sbjct: 35  GCKMRCQYCHNPDTWALETNNSRERTVDDVLAEALRYRHFWGENG--------------G 80

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM-LA 240
           I + G GE +   + V     + + +  L       TL T GF        +      + 
Sbjct: 81  ITVSG-GEAMLQIEFVTA---LFTKAKELGI---HCTLDTCGFT-----FRDTPEYHEIV 128

Query: 241 ISLHAVSNDLRNILVPINRKYPL------EMLIDACRHYPGLSNARRITFEYVMLKGIND 294
             L AV++ +   L  IN K  +         I A   Y        +   +V++ G+ D
Sbjct: 129 DKLLAVTDLVLLDLKEINPKQHIVVTRQPNTNILAFARYLS-DKGVPVWIRHVLVPGLTD 187

Query: 295 SPRDALNLIKI---LKGIPAKINLIPFNPWPGCEY------------LCSDQKDIVT 336
              D + L K    LK +  K  ++P++     ++                ++ +  
Sbjct: 188 FDEDLIELGKFVETLKNVD-KFEILPYHTLGEFKWRELGIPYTLEGVKPPTRERVQN 243


>gi|170717241|ref|YP_001784359.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus somnus
           2336]
 gi|168825370|gb|ACA30741.1| pyruvate formate-lyase activating enzyme [Haemophilus somnus 2336]
          Length = 246

 Score = 37.6 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 79/248 (31%), Gaps = 54/248 (21%)

Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177
           GC + C +C+              ++ E+++ +V+  R  +    G     G        
Sbjct: 29  GCLMRCKYCHNRDTWDLHDGKE--ISVEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAE 86

Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237
            + +       E                       S     L T+GFV +   V +E+  
Sbjct: 87  FVRDWFKACKAE---------------------GISTC---LDTNGFVRHYDHVIDELLD 122

Query: 238 MLAISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
           +  + L  +   ++ +   L+ +  K  LE        Y    N  +    YV++ G  D
Sbjct: 123 VTDLVLLDLKQLNDKVHQNLIGVPNKRTLE-----FAKYLQKRNQ-KTWIRYVVVPGYTD 176

Query: 295 SPRDALNLIKILKGIPAK--INLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340
           +  D   L + ++ +     + L+P++     ++                +  +      
Sbjct: 177 ADEDIHLLGQFIQNMSNIEQVELLPYHQLGAHKWKTMGEQYELEDVVPPTKDSLEHIKSI 236

Query: 341 IKRSGYSS 348
           I+  G++ 
Sbjct: 237 IESYGHTV 244


>gi|168187740|ref|ZP_02622375.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum C
           str. Eklund]
 gi|169294396|gb|EDS76529.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum C
           str. Eklund]
          Length = 235

 Score = 37.6 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 72/213 (33%), Gaps = 42/213 (19%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L CSFC+                             P     + +      +    +
Sbjct: 28  GCPLRCSFCHNPD---------------TWNFNIGDKITPEKLVKKIIRFKPYFKNNGGV 72

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF----VPNIARVGEEIGVM 238
              G GE L   + + K+L +  ++           + TSG+    +  I +  +     
Sbjct: 73  TFSG-GESLMQPEFLLKTLKLCKENN------IHTAIDTSGYYSDHLNEILKFTDL---- 121

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSP 296
           + + +  V +         N K    + ++    +  + N    R+   +V++  I DS 
Sbjct: 122 VLLDIKHVDD--------FNFKALTGVSMEKLLSFIEILNNSSCRVWIRHVVVPKITDSI 173

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327
               +L KI+K I    KI L+P++     +Y 
Sbjct: 174 EHIHSLKKIIKKINNVDKIELLPYHTLGVNKYK 206


>gi|77411520|ref|ZP_00787864.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
           CJB111]
 gi|77162446|gb|EAO73413.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
           CJB111]
          Length = 262

 Score = 37.6 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 71/238 (29%), Gaps = 41/238 (17%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E+        +           E +       K   I
Sbjct: 35  GCKMRCQYCH--------NPDTWEM-----ETNNSKERTVEDVLKEALRYKHFWGKDGGI 81

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML--A 240
            + G GE +   D    +L I +  +G+       TL T GF     R   E  V+L   
Sbjct: 82  TVSG-GEAMLQID-FITALFIEAKKLGI-----HTTLDTCGFA---YRATPEYHVILEKL 131

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRD 298
           + +  +       + P   K            +          +   +V++ G+ D    
Sbjct: 132 LDVTDLVLLDLKEIDPEQHKIVTRQSNKNILQFARYLSDRGTPVWIRHVLVPGLTDIDDH 191

Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIK 342
              L + ++ +    K  ++P++     ++                 + +    + +K
Sbjct: 192 LKRLGEFVQTLDNVDKFEVLPYHTMGEFKWRELGIPYPLAGVKPPTPERVKNAKDIMK 249


>gi|300087155|ref|YP_003757677.1| radical SAM domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299526888|gb|ADJ25356.1| Radical SAM domain protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 487

 Score = 37.6 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 22/111 (19%)

Query: 63  LLNQHFSIIYPEIVD----EKISCDGTR--------KWLLRFPARCIGGPVEIETVYIPE 110
            L +H     P + +       + DG +        K L   P              I  
Sbjct: 126 KLVEHLETGSPALSEIPGLAYRAQDGIQQNPASQELKNLDELPDPAWH--------LIDV 177

Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGT--QKLVRNLTAEEILLQVLLARSLLG 159
           K      +++  GC   C+FCY          + +AE I+ QV   +   G
Sbjct: 178 KKYWAASLNTSRGCPFRCTFCYNSAFHAGYRGDFSAERIVSQVEHLQKEYG 228


>gi|257063931|ref|YP_003143603.1| KamA family protein [Slackia heliotrinireducens DSM 20476]
 gi|256791584|gb|ACV22254.1| KamA family protein [Slackia heliotrinireducens DSM 20476]
          Length = 407

 Score = 37.6 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 84/242 (34%), Gaps = 52/242 (21%)

Query: 90  LRFPARCIGGPVEIETVY--IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147
           L F            TV   +  K   T  V S   C++ C  C+     + R+  A+E 
Sbjct: 79  LDFSGLADTSGESKSTVLPGLQHKYAETALVLSTNQCAMYCRHCFRRRL-VGRD--ADET 135

Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK----KSLSI 203
           +  +      + D                 +I+N+++ G G+ L N +       ++L+ 
Sbjct: 136 VRNIDAVADYIRDH---------------EEITNVLISG-GDALMNSNETLFRYLEALAP 179

Query: 204 ASDSMGLSFS-------KRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256
                 +           +RIT    G +  ++     + + +    +  +      + P
Sbjct: 180 IPHLKTIRLGTRIPVVLPQRIT-DDPGLIDLLSGFNHIVQLHVVTQFNHPN-----EITP 233

Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316
                      DA R    L     +  + V+LKG+ND+P     L +++  +   I ++
Sbjct: 234 --------ESRDAIRILLEL--GIPVRNQTVLLKGVNDTPE---TLARLMDDL-VGIGIV 279

Query: 317 PF 318
           P+
Sbjct: 280 PY 281


>gi|113461290|ref|YP_719359.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus somnus
           129PT]
 gi|112823333|gb|ABI25422.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus somnus
           129PT]
          Length = 246

 Score = 37.6 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 74/243 (30%), Gaps = 44/243 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+       R+                          E +            
Sbjct: 29  GCLMRCKYCH------NRDT---------WDLHDGKEISVEDLMKEVVTYRHFMNATGGG 73

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242
           V    GE +   + V+              S     L T+GFV +   V +E+  +  + 
Sbjct: 74  VTASGGEAILQAEFVRD---WFKACKAEGISTC---LDTNGFVRHYDHVIDELLDVTDLV 127

Query: 243 LHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           L  +   ++ +   L+ +  K  LE        Y    N  +    YV++ G  D+  D 
Sbjct: 128 LLDLKQLNDKVHQNLIGVPNKRTLE-----FAKYLQKRNQ-KTWIRYVVVPGYTDADEDI 181

Query: 300 LNLIKILKGIPAK--INLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRSG 345
             L + ++ +     + L+P++     ++                +  +      I+  G
Sbjct: 182 HLLGQFIQNMSNIEQVELLPYHQLGAHKWKTMGEQYELEDVVPPTKDSLEHIKSIIESYG 241

Query: 346 YSS 348
           ++ 
Sbjct: 242 HTV 244


>gi|311896173|dbj|BAJ28581.1| putative pyruvate formate-lyase-activating enzyme [Kitasatospora
           setae KM-6054]
          Length = 256

 Score = 37.6 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 80/244 (32%), Gaps = 45/244 (18%)

Query: 122 VGCSLTCSFCYTGTQKLVRNLT---AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178
            GC L C +C+      +RN T   A+E++ +              +    +     G  
Sbjct: 40  AGCPLNCLYCHNPDTMRMRNGTRTGADEVVAE------------ASKYTAFIHAAGGGAT 87

Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           +S       GEPL   D   +        +GL        L TSGF+    R  +E+   
Sbjct: 88  VSG------GEPLLQPDFAGELFHRFKHELGL-----HTALDTSGFLGA--RASDELLAD 134

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           + + L  V +     L        L+  +   R    L   + +   +V++ G+ D   +
Sbjct: 135 VDLVLLDVKSWD-QGLYRKVTGQRLDPTLAFARRLADL--GKEVWVRFVLVPGLTDPAEN 191

Query: 299 ALNLIKILKGIP--AKINLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRS 344
              +      +   ++++++PF+     ++                 + +    +     
Sbjct: 192 VDGVAAFAASLGNVSRVDVLPFHKLGQAKWEALGRDFTLADTPTPSPEQLRAARDAFAAH 251

Query: 345 GYSS 348
           G  +
Sbjct: 252 GLHA 255


>gi|239904846|ref|YP_002951584.1| putative response regulator receiver protein [Desulfovibrio
           magneticus RS-1]
 gi|239794709|dbj|BAH73698.1| putative response regulator receiver protein [Desulfovibrio
           magneticus RS-1]
          Length = 801

 Score = 37.6 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 194 FDNVKKSLSIASD--SMGLSFSKRRITLSTS-GFV--PNIARVGEEIGVMLAISLHAVSN 248
           +  V + +    D  S     S   + +S S G V  P I    EE+     I+LH   +
Sbjct: 468 YREVVRIIKRIRDAMSEVFPLSGHDVHVSASMGIVVSPAIYEKPEELLRNANIALHRAKD 527

Query: 249 DLRNILVPINRKYPLEMLIDACR 271
           + RN     N +  LE  I    
Sbjct: 528 EGRNRFKVFNTRM-LEDAIRLMD 549


>gi|162147685|ref|YP_001602146.1| molybdenum cofactor biosynthesis protein A [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786262|emb|CAP55844.1| putative molybdenum cofactor biosynthesis protein A
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 338

 Score = 37.6 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 31/213 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C + C +C +        L   EIL                E++E +    +   ++ I 
Sbjct: 24  CDMRCVYCMSEAMSF---LPKAEILS--------------FEEMERLCAAFIRNGVTRIR 66

Query: 184 MMGMGEPL--CNFDNVKKSLSI---ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           + G GEPL   + D    +L      +D  G    +  +T + S    +   +       
Sbjct: 67  VTG-GEPLVRRDIDGFFAALGTWLHRTDGDG-HLDELTLTTNGSHLATHADALARAGVRR 124

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           + ISL +  +  R   +   R+  LE  ++  R     +    I    V + G+ND   D
Sbjct: 125 VNISLDS-LDSKRFQRI--TRRGRLEQTLEGIR--AARAAGLAIRINTVAMAGVNDDEFD 179

Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
              L+     I A + LI   P        SD+
Sbjct: 180 T--LLAWCGEIGADLCLIETMPMGDTGEDRSDR 210


>gi|291278632|ref|YP_003495467.1| hypothetical protein DEFDS_0200 [Deferribacter desulfuricans SSM1]
 gi|290753334|dbj|BAI79711.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 432

 Score = 37.6 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF-N 319
           Y L+ ++ +            ++  Y+M+ GIND   +   LI  L     K+ LI   N
Sbjct: 314 YKLDDVLKSIE--LANKYNVYVSLNYLMMPGINDRESEINALIDFLSAY--KVELIQLRN 369

Query: 320 PWPGCEYLCS 329
                +YL S
Sbjct: 370 LNIDPDYLFS 379


>gi|320094018|ref|ZP_08025843.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979062|gb|EFW10580.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 508

 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 89  LLRFPARCIGGPVEIE--------TVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLV 139
           LLR         VEIE        T+    +S     VS  VGC+ TC+FC         
Sbjct: 133 LLRRAEHNRAAAVEIEESLKVFPSTLPTRRESVYAAWVSISVGCNNTCTFCIVPRLRGKE 192

Query: 140 RNLTAEEILLQVLLARSL 157
           R+    EIL +V    S 
Sbjct: 193 RDRRPGEILAEVEAVASQ 210


>gi|76787669|ref|YP_330039.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
           A909]
 gi|76562726|gb|ABA45310.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae
           A909]
          Length = 262

 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 71/238 (29%), Gaps = 41/238 (17%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+        N    E+        +           E +       K   I
Sbjct: 35  GCKMRCQYCH--------NPDTWEM-----ETNNSKERTVEDVLKEALRYKHFWGKDGGI 81

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML--A 240
            + G GE +   D    +L I +  +G+       TL T GF     R   E  V+L   
Sbjct: 82  TVSG-GEAMLQID-FITALFIEAKKLGI-----HTTLDTCGFA---YRATPEYHVILEKL 131

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRD 298
           + +  +       + P   K            +          +   +V++ G+ D    
Sbjct: 132 LDVTDLVLLDLKEIDPEQHKIVTRQSNKNILQFARYLSDRGTPVWIRHVLVPGLTDIDDH 191

Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIK 342
              L + ++ +    K  ++P++     ++                 + +    + +K
Sbjct: 192 LKRLGEFVQTLDNVDKFEVLPYHTMGEFKWRELGIPYPLAGVKPPTPERVKNAKDIMK 249


>gi|6580770|gb|AAF18276.1| pyruvate formate lyase activating enzyme [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 270

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 40/215 (18%)

Query: 123 GCSLTCSFCYTGTQKLVRN---LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           G    C +C+      ++N   +T  E++ +V      L    G   I G          
Sbjct: 56  GLRFACQYCHNPDSWFLKNGRAVTLAEMMEEVASYADFLKRAGGGITISG---------- 105

Query: 180 SNIVMMGMGEPLCNFD---NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
                   GEPL   +    + K+                  + T+GF+   A       
Sbjct: 106 --------GEPLVQPEFTGALLKAAKYL---------GLHTAIDTAGFLGAQADDALLSN 148

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             L +      ND R           L+  +   +    L     +   YV++ G+ D+ 
Sbjct: 149 TDLVLLDIKAFNDKR---YKALTGVELQPTLAFAKRLAALKK--PVWLRYVLVPGLTDNF 203

Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYLCS 329
            +  NL      +    +++++PF+     ++  S
Sbjct: 204 NEIANLADFAATLGNIERVDVLPFHKMGEYKWKAS 238


>gi|312380688|gb|EFR26616.1| hypothetical protein AND_07186 [Anopheles darlingi]
          Length = 707

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 14/122 (11%)

Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH--AVSNDLRNILVPINRKYPL- 263
             GL     R+    SG V  + +  + I +     LH   V +D+R  + P   +YP+ 
Sbjct: 21  PSGLGLHPSRVVEIRSGVVRRVDKAAKSINIRKQKPLHFGEVIDDIRCSINPTTNEYPIH 80

Query: 264 -EMLIDACRHYPGLSNARRITFE---------YVMLKGIN-DSPRDALNLIKILKGIPAK 312
              L +   +   L  + RI  +         +++ + ++ D+       IK+L    A 
Sbjct: 81  LAALSEDSENLSALLESHRIVIDQKFEDRTALFLLFENLSGDNYEKVFECIKLLLKHGAN 140

Query: 313 IN 314
           IN
Sbjct: 141 IN 142


>gi|62183018|gb|AAX73205.1| NifB [Paenibacillus massiliensis]
          Length = 473

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 72/219 (32%), Gaps = 31/219 (14%)

Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           C++ C +C          R     E+L   L AR  +G            + +   ++S 
Sbjct: 52  CNIQCHYCNRKFDCVNESRPGVVSELLTPELAARKTIG------------VAAQLMQLSV 99

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238
           + + G G+PL N     ++     D    +    S   +TL     V  I  +G    V 
Sbjct: 100 VGIAGPGDPLANPKATFETFRQVRDSVKDVIFCLSTNGLTLIRH--VEEIVNLG-ISHVT 156

Query: 239 LAISLHAVSNDLRN--ILVPINRKYPLEMLIDACRHYPGL------SNARRITFEYVMLK 290
           + I+        R    +     +Y  E                  S    +    V++ 
Sbjct: 157 ITINAVDPCIGSRIYGWVYDGGVRYEGEEGAALLIQRQLEGLSMLSSRGVLVKVNSVLIP 216

Query: 291 GINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYLC 328
            +ND       + +++KG  A I N++P    PG  Y  
Sbjct: 217 DVND--AHLPEVARVVKGHGAAIHNIMPLIIAPGSRYEQ 253


>gi|312128511|ref|YP_003993385.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778530|gb|ADQ08016.1| Radical SAM domain protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 197

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 29/163 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+ +C FC       +RN          L +   L         E +      +K   IV
Sbjct: 20  CTNSCIFC-------IRNTERG------LGSEYDLWLEKDPTAEEILAEIKDPQKYDEIV 66

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-----VGEEIGVM 238
             G GEPL   D V +      +      +   + ++T+G    I +     +   +   
Sbjct: 67  FCGYGEPLIRLDVVIEVAKKLKE-----ITSVPLRVNTNGHASYIHKKNVPQLLSGLIDR 121

Query: 239 LAISLHAVSNDLRNIL-VPINRKYPLEMLIDACRHYPGLSNAR 280
           ++ISL+A + +  N +  P  +      + D    +   S   
Sbjct: 122 ISISLNAPNKERYNEICRPFAK-----DIYDHVIEFIKESKKY 159


>gi|28557069|dbj|BAC57533.1| pyruvate formate-lyase activating enzyme [Clostridium limosum]
          Length = 194

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY 326
             N  ++   +V++ GI DS      L  I++ I    KI L+P++     +Y
Sbjct: 109 KRNKNKVWIRHVIVPGITDSIEHIDKLATIIRTIDNVEKIELLPYHTIGTHKY 161


>gi|301062322|ref|ZP_07202985.1| radical SAM domain protein [delta proteobacterium NaphS2]
 gi|300443526|gb|EFK07628.1| radical SAM domain protein [delta proteobacterium NaphS2]
          Length = 309

 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 33/194 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C +C         N T   I   V          P  + +  +           I 
Sbjct: 26  CTFDCLYCEV---GKTTNKT---ITGGVFA--------PVDDILNQLDERLSECSPDVIT 71

Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIAR--VGEEIG 236
           + G GEP      D +   +   +D+         I + T+G +    ++ +  +G ++ 
Sbjct: 72  LAGSGEPTLHSEIDRIIWGIRKRTDTD--------IVILTNGSLFWDESVRKRVLGADL- 122

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             +  +L +        +   +    L+ +++            RI  E ++L GINDS 
Sbjct: 123 --IMPTLSSAVPRTFQTIHRHHGGLNLDRIVEGLEQ-LRREFKGRIYLEVILLAGINDSE 179

Query: 297 RDALNLIKILKGIP 310
            +   L  +++ I 
Sbjct: 180 EEITRLKPLIEKIQ 193


>gi|297617252|ref|YP_003702411.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145089|gb|ADI01846.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 293

 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 23/209 (11%)

Query: 105 TVYIPEKSRGTLCVSSQVGCSL-TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           ++Y P     +  +   VGCS   C+FC     K  R  + EEI   + +A+   GD   
Sbjct: 7   SIYRPPSEARSYILQCTVGCSHNGCTFCGMYKDKKYRVRSLEEIKADIRMAKLYYGDLQK 66

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF--SKRRITLST 221
               +G  +     ++  I          N+        +      +      + I   T
Sbjct: 67  VFLADGDALAMQTDELLEI---------LNY-----LYRLFPSLYHVGIYAGPQSILQKT 112

Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281
              +  + + G    + +A       ++   +L  IN+    E +++A +          
Sbjct: 113 EEELQMLKQAG----LTIAYLGIETGDE--RLLKEINKGVTYEEMVEAGQKIVRSGIKLS 166

Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIP 310
            T    +      S   A    +I   I 
Sbjct: 167 ATVLLGLAGPGERSAEHAAATARICNEIN 195


>gi|73670827|ref|YP_306842.1| hypothetical protein Mbar_A3389 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397989|gb|AAZ72262.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 215

 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 59/186 (31%), Gaps = 25/186 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CS  C FC       +RN         V      L   P  E++ G +      K   IV
Sbjct: 31  CSADCVFC-------IRNFADG-----VYGYDLRLSREPTTEEVIGALEGLDLSKYREIV 78

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA-------RVGEEIG 236
             G+GEP    D V                  R+ L T+G    I         +     
Sbjct: 79  FTGLGEPTIRLDVVLAVTRWLKSRN------IRVRLDTNGQAALINPGRDVVSELKTAGL 132

Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
             +++SL+A S +  N L     K     ++D  +       + R+T   +    +    
Sbjct: 133 DSVSVSLNAESEEKYNKLCRPIHKNAYSAVLDFVKKAKKAGISTRVTVVNIPEIDLEKCR 192

Query: 297 RDALNL 302
           + A  L
Sbjct: 193 KLAEEL 198


>gi|312134271|ref|YP_004001609.1| Radical SAM domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311774322|gb|ADQ03809.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL]
          Length = 197

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 44/169 (26%)

Query: 124 CSLTCSFCYTGTQK---------LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           C+ +C FC   ++K         L ++ TAEEIL ++                       
Sbjct: 20  CTNSCIFCIRNSEKGLGEGYDLWLEKDPTAEEILFEI----------------------K 57

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR---- 230
             +K   IV  G GEPL   D V +      +      S   + ++T+G    I +    
Sbjct: 58  DPQKYDEIVFCGYGEPLIKLDVVIEVAKKLKE-----ISSVPLRVNTNGHASYIHKKNVP 112

Query: 231 -VGEEIGVMLAISLHAVSNDLRNIL-VPINRKY--PLEMLIDACRHYPG 275
            +       ++ISL+A   +  N +  P ++     +   I   R Y  
Sbjct: 113 QLLSGFIDRISISLNAPDKEKYNEICRPFDKDIYDHVIEFIKESRKYIK 161


>gi|261211227|ref|ZP_05925516.1| lysine 2,3-aminomutase [Vibrio sp. RC341]
 gi|260839728|gb|EEX66339.1| lysine 2,3-aminomutase [Vibrio sp. RC341]
          Length = 340

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 71/221 (32%), Gaps = 46/221 (20%)

Query: 94  ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
                    I  +    K+R  L V    GC++ C +C+        N  ++ I  Q   
Sbjct: 92  DPLDEQNNAIPGLLHKYKNRCLLIVKG--GCAINCRYCFRRHFPYEDNKGSKAIWQQ--- 146

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
                           +   +   +++ ++  G G+PL             +    L++ 
Sbjct: 147 ---------------SLDYIAQNPQLNEVIFSG-GDPL------------MAKDHELAWL 178

Query: 214 KRRITLSTSGFVPNIARVGEE------IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
             RI       +P+I R+         I   +   L  +    R  ++ +        + 
Sbjct: 179 IERIAA-----IPHIKRLRIHSRLPVVIPARITEELVELFAQTRLQILLVTHINHANEIN 233

Query: 268 DACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKIL 306
              +       A  +T   + V+LKG+ND+    + L + L
Sbjct: 234 LELKQQMARLRAVNVTLLNQGVLLKGVNDTVAAQVALSETL 274


>gi|57642095|ref|YP_184573.1| hypothetical protein TK2160 [Thermococcus kodakarensis KOD1]
 gi|57160419|dbj|BAD86349.1| hypothetical protein, conserved, radical SAM superfamily
           [Thermococcus kodakarensis KOD1]
          Length = 443

 Score = 37.2 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 71/191 (37%), Gaps = 31/191 (16%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+L+C +CY   +K              L +   L        +  +       +  N+V
Sbjct: 105 CNLSCPYCYQDLRK-------------ALDSNQDLTTDSWNRIMRLINKRINILRNVNVV 151

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG----VML 239
             G GEP+ N++ +K ++        +   K  +++ T+G + +  R  E       V +
Sbjct: 152 FFG-GEPMLNYNTLKVAVRDLDSLKEIGI-KTSMSIITNGTLFSKQRAQELAPYISSVQI 209

Query: 240 AISLHAVSNDLRNILVPINRKYPL--EMLIDACRHYPGLSNARRITFEYVMLKGIN-DSP 296
            +     ++D        +  + +  + +ID    Y      +RI    ++   IN D+ 
Sbjct: 210 TLDGMKETHDKMRPYSDGSGTFDIILKNIIDNIDQY-----RKRI----ILRSNINDDNI 260

Query: 297 RDALNLIKILK 307
               +L+  LK
Sbjct: 261 ASVKSLLHYLK 271


>gi|219666435|ref|YP_002456870.1| glycyl-radical enzyme activating protein family [Desulfitobacterium
           hafniense DCB-2]
 gi|219536695|gb|ACL18434.1| glycyl-radical enzyme activating protein family [Desulfitobacterium
           hafniense DCB-2]
          Length = 310

 Score = 37.2 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 13/125 (10%)

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHA 245
           GEPL   D V ++L  A         + + T+ T G+V    + +V + +   L + +  
Sbjct: 148 GEPLMQGDFVAETLKEARRR------RLKTTIETCGYVDWSTMEKVCQHL-TSLIMDIKC 200

Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
           +  +        + +  L+     C H+P L    R       + G ND   D   + + 
Sbjct: 201 MDPEKHQKYTGASNELILDNFNKLCEHFPKLPKLIRTPV----VPGFNDREEDIREIAEF 256

Query: 306 LKGIP 310
           +K  P
Sbjct: 257 VKDKP 261


>gi|85707986|ref|ZP_01039052.1| hypothetical protein NAP1_02085 [Erythrobacter sp. NAP1]
 gi|85689520|gb|EAQ29523.1| hypothetical protein NAP1_02085 [Erythrobacter sp. NAP1]
          Length = 336

 Score = 37.2 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 34/199 (17%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C++C       +                    +    E++  +    + R ++ I 
Sbjct: 28  CDLRCTYCMPERMTFLP-----------------KREVLTLEELYDLASGFIDRGVTKIR 70

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           + G GEPL   D V   +      +G       +TL+T+       ++ +    ++   L
Sbjct: 71  ITG-GEPLVRRDIV-DLIRALGRKLGEGL--EELTLTTNAT-----QLADHADALVRAGL 121

Query: 244 HAVSNDL----RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
             V+  L    R +   + R+  L  ++D        ++  ++    V LKG N    + 
Sbjct: 122 RRVNVSLDTLDRELFAKLTRRDALPRVLDGIA--AAKASGLKVKLNAVALKGAN--EEEL 177

Query: 300 LNLIKILKGIPAKINLIPF 318
            +LI    G   ++ LI  
Sbjct: 178 PDLIGWAHGQGHEVTLIEV 196


>gi|319940982|ref|ZP_08015319.1| pyruvate formate-lyase 1-activating enzyme [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805555|gb|EFW02350.1| pyruvate formate-lyase 1-activating enzyme [Sutterella
           wadsworthensis 3_1_45B]
          Length = 244

 Score = 37.2 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 70/245 (28%), Gaps = 51/245 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC + C +C+                       +             +       K   I
Sbjct: 28  GCRMRCVYCHNPD---------------TWRIHAGEEKSAAEVLRMALRYRPYWGKEGGI 72

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--------PNIARVGEE 234
            + G GEPL   D + +     + + G++      TL T G              R+ + 
Sbjct: 73  TVSG-GEPLLQIDFLIELFE-LAKTEGIN-----TTLDTCGLPFTKDPAWLVKFERLMKS 125

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
              ++ + L  +       L            I AC  +    + + +   +V++ G  D
Sbjct: 126 TD-LVMLDLKHIDPPTHKRLTGWKN-----DSILACAQWLS-EHGKPMWIRHVLVPGWTD 178

Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFSEC 340
                + L   +  +    ++ ++P++ +   ++               + + +      
Sbjct: 179 EDAALVKLAAFVAELRTVKRVEVLPYHTFAIPKWDRLGIPNKIRDVLPPEPERVANAKRI 238

Query: 341 IKRSG 345
           +   G
Sbjct: 239 LHAFG 243


>gi|238927149|ref|ZP_04658909.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531]
 gi|238884931|gb|EEQ48569.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531]
          Length = 342

 Score = 37.2 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 9/99 (9%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
            IP  +  T+ +     C+  C +C   T    R+    E   + L  R    D    E 
Sbjct: 18  IIPLAAPFTVYIEQTKYCNFKCFYCIHST----RDEADGEF--RALGHRMQHIDEGFFEK 71

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLS 202
           I   +       I  IV  G+GEPL N    D V+ ++ 
Sbjct: 72  IIHDLKAFPQGGIKRIVFSGLGEPLMNPRLPDYVRMAVE 110


>gi|156936993|ref|YP_001434789.1| radical SAM domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156565977|gb|ABU81382.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 338

 Score = 37.2 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 75/207 (36%), Gaps = 31/207 (14%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           I ++    L V     CS+ C FC        ++  A+ ++  +   R+ + D    + +
Sbjct: 25  IIDRGTNVLQVRITTVCSMCCKFCSVDAGPCSKSRWADFVVTDLEWLRAWVNDVVKFKGV 84

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
                         +++ G+G+PL    NV   +       G++     + L T G    
Sbjct: 85  PVE-----------VLLDGVGDPLE-HPNVVGVVRTLKSIEGVA----SVALETHGL--- 125

Query: 228 IARVGEEIGVMLA-ISLHAVS------NDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280
             ++ E++   LA   L  ++      ++ +   +     Y +  + +            
Sbjct: 126 --KLNEDLAFSLAEAGLDRINLSIETLDEAKAKELAGRPDYDVRRVKEVIEK-VFRETQV 182

Query: 281 RITFEYVMLKGINDSPRDALNLIKILK 307
            I    V+L GIND   D   +IK +K
Sbjct: 183 DIHVTPVLLPGIND--EDIKEIIKWVK 207


>gi|322419387|ref|YP_004198610.1| Radical SAM domain-containing protein [Geobacter sp. M18]
 gi|320125774|gb|ADW13334.1| Radical SAM domain protein [Geobacter sp. M18]
          Length = 285

 Score = 37.2 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 32/232 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C +C        R+  A E     + +R L  +       E M  P  G  I  I 
Sbjct: 35  CNIKCGYCT------RRHDCANE-SRPGVTSRLLTPEEAIVRVREVMASPVTGPIIKVIG 87

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241
           + G G+PL N +   ++  +        F      +ST+G      +  + +     L +
Sbjct: 88  IAGPGDPLFN-EETFETFRLVDQE----FPDLIKCMSTNGLLLPDKMLVLADLGLHSLTV 142

Query: 242 SLHAVSNDLRNILVPINR----KYPLEMLIDACRH------YPGLSNARRITFEYVMLKG 291
           +L+ +   +   +          Y  E   D                   I    V++ G
Sbjct: 143 TLNTLDPKVGGKIYSHVNYKGTTYRGEEGADILVRNQLEGIRLAAELGMTIKINTVLIPG 202

Query: 292 INDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTFSE 339
           +ND       + + +K + A + N++P    P  ++        + +     
Sbjct: 203 VND--EQIPLISQKVKELGAFVMNIMPL--IPQADFAHVEAPSAELLDALRR 250


>gi|238918508|ref|YP_002932022.1| pyruvate formate lyase-activating enzyme [Edwardsiella ictaluri
           93-146]
 gi|238868076|gb|ACR67787.1| pyruvate formate lyase-activating enzyme [Edwardsiella ictaluri
           93-146]
          Length = 287

 Score = 37.2 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 76/252 (30%), Gaps = 47/252 (18%)

Query: 117 CVSSQVGC----SLTCSFCYTGTQKLVRNLTAEEI---LLQVLLARSLLGDFPGCEDIEG 169
            +S Q G     +L+C  C T  Q   R      +   +  VL+       F     + G
Sbjct: 61  ALSLQAGKILWDALSCRQCDTCLQGCPRQANPMALSLSVDDVLMQLRRQAAFIKGITVSG 120

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS---KRRITLSTSGFVP 226
                    +  +      +P        ++L    DS G   S     R+     G + 
Sbjct: 121 GEATLQLPFLLALFQAIRRDPG------LQALDCLVDSNG-ELSEPGWTRLIPWCDGVMV 173

Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
           ++   G+E                   L     +  L  ++   +          +    
Sbjct: 174 DLKAWGDERH---------------RWLTGRGNRRILHSILWLAQRRRLAELRLLV---- 214

Query: 287 VMLKGINDSPRDALNLIK---ILKGIPAKINLIPFNPW----PGCEYLCSDQKDIVTFSE 339
             +   +D       L +   +L  +P ++N   F+      P   +L + + DI   ++
Sbjct: 215 --IPQHSDYLAHIDALAEFILLLDDVPVRLN--AFHHHGVYGPASAWLTATKADIEQVAQ 270

Query: 340 CIKRSGYSSPIR 351
            ++  G  + IR
Sbjct: 271 ALEARGVGAVIR 282


>gi|323141695|ref|ZP_08076573.1| six-Cys-in-45 modification radical SAM protein
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413851|gb|EFY04692.1| six-Cys-in-45 modification radical SAM protein
           [Phascolarctobacterium sp. YIT 12067]
          Length = 487

 Score = 37.2 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 18/132 (13%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
           +LC+     C+L C +C+  T                   R L+      + IE  +  S
Sbjct: 114 SLCLLVTHDCNLRCGYCFADTGSFGGC-------------RQLMSKETAEKAIEFAIEGS 160

Query: 175 VGRKISNIVMMGMGEPLCNFDNVK---KSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
             R    + M G GEPL N+  V    + +       G +      T  T     NI + 
Sbjct: 161 KKRHNLELDMFG-GEPLMNWPVVVHITEYVRRREKETGKNIKLTLTTNGTLLNDDNI-KF 218

Query: 232 GEEIGVMLAISL 243
             +  VML +S+
Sbjct: 219 LNDNRVMLVLSM 230


>gi|85860302|ref|YP_462504.1| metallo cofactor biosynthesis protein [Syntrophus aciditrophicus
           SB]
 gi|85723393|gb|ABC78336.1| metallo cofactor biosynthesis protein [Syntrophus aciditrophicus
           SB]
          Length = 232

 Score = 37.2 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 80/229 (34%), Gaps = 36/229 (15%)

Query: 73  PEIVDEKISCDGTRKWLLR-FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131
           P +  ++ S      +L R         P+  ET+   E     L ++++  CS  C FC
Sbjct: 14  PRVYYDQRS------FLRRSMMPDHDNNPLRRETLCYEEFGNLYLNITNR--CSARCIFC 65

Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191
                  +RN +       V   R  L   P  E+I   +     +K   IV  G GEP 
Sbjct: 66  -------IRNFSDG-----VYGYRLRLSREPSEEEILRELEHFDLKKYGEIVFTGFGEPT 113

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA-------RVGEEIGVMLAISLH 244
           C  D V +         G+      + L T+G    +         +       +++SL+
Sbjct: 114 CRLDTVLRITEWL-HKRGIP-----VRLDTNGHAALMYPGRDVVAELKAAGLDAVSVSLN 167

Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293
           A S +  N L     +     L++  R         R+T   V   GIN
Sbjct: 168 AESEEKYNRLCRPAFEGSYPALLEFTRKAVMAGLRTRMTV--VEQPGIN 214


>gi|119384986|ref|YP_916042.1| molybdenum cofactor biosynthesis protein A [Paracoccus
           denitrificans PD1222]
 gi|166217887|sp|A1B4A2|MOAA_PARDP RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|119374753|gb|ABL70346.1| GTP cyclohydrolase subunit MoaA [Paracoccus denitrificans PD1222]
          Length = 344

 Score = 37.2 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 37/187 (19%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C     + +                    D    E+++ +    VG  +  + 
Sbjct: 35  CDFRCTYCMAEHMQFLP-----------------KRDLLTLEELDRLCSAFVGLGVRKLR 77

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLA 240
           + G GEPL    N+ +     S  +G       +TL+T+G    +AR   E+   GV   
Sbjct: 78  VTG-GEPLV-RRNIMEFFRAMSRHLGAGL--DELTLTTNG--SQLARFATELADCGVRRV 131

Query: 241 ISLHAVSNDLR-NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
                  ++ R   +    R   L  ++         +   R+    V LKG N+     
Sbjct: 132 NVSLDTLDEDRFARITRWGR---LPQVLQGIE--AAKAAGMRVKINTVALKGFNE----- 181

Query: 300 LNLIKIL 306
             L +++
Sbjct: 182 DELFRLV 188


>gi|306840468|ref|ZP_07473227.1| molybdenum cofactor biosynthesis protein A [Brucella sp. BO2]
 gi|306289483|gb|EFM60701.1| molybdenum cofactor biosynthesis protein A [Brucella sp. BO2]
          Length = 314

 Score = 37.2 bits (85), Expect = 5.0,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 72/212 (33%), Gaps = 33/212 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C       +                    D    E+++ +    + + +  + 
Sbjct: 5   CDFRCTYCMAEHMTFLP-----------------KKDLLTLEELDRLCSVFIEKGVRKLR 47

Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239
           + G GEPL   N  ++  +LS    S  L      +TL+T+G         + +     +
Sbjct: 48  LTG-GEPLVRKNIMHLIGNLSRHLKSGAL----DELTLTTNGSQLARFAGELADCGVRRI 102

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
            +SL  ++ +    +        +   IDA R          +    V LK  ND+    
Sbjct: 103 NVSLDTLNPEKFRTITRWGDLSRVLEGIDAAR-----KAGIHVKINAVALKDFNDAE--I 155

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
             LI+   G    + LI   P    E+  +DQ
Sbjct: 156 PELIRWAHGRGMDVTLIETMPMGEIEFDRTDQ 187


>gi|126465145|ref|YP_001040254.1| radical SAM domain-containing protein [Staphylothermus marinus F1]
 gi|126013968|gb|ABN69346.1| Radical SAM domain protein [Staphylothermus marinus F1]
          Length = 259

 Score = 37.2 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 39/162 (24%)

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+L C FC++       N                 G F   + +   +     ++   
Sbjct: 47  VGCNLRCKFCWSWRYSFYTN----------------KGFFQTPQQVYEKLTRIAEKRKYK 90

Query: 182 IVMMGMGEPLCNFDNVKKSLSIA--------SDSMGLSFSKRRITLSTSGFVPNIARVGE 233
            + +  GEP     +V + L +          ++ GL     R              +  
Sbjct: 91  YIRLSGGEPTITMKHVIQLLELLDQTKFVFILETNGLLIGYHR---------KYAEELAT 141

Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKY------PLEMLIDA 269
              + + +S    + +    L   ++KY       LE LIDA
Sbjct: 142 YRKIAVRVSFKGTTPEEFEQLTGADKKYYGYQFKALENLIDA 183


>gi|310826493|ref|YP_003958850.1| hypothetical protein ELI_0875 [Eubacterium limosum KIST612]
 gi|308738227|gb|ADO35887.1| hypothetical protein ELI_0875 [Eubacterium limosum KIST612]
          Length = 205

 Score = 37.2 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 73/204 (35%), Gaps = 22/204 (10%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169
            K +  L V++   C+  C FC+    +  R   A  +  ++ L R      P  E+I  
Sbjct: 12  YKDKKALYVNATNRCNNRCVFCH----RFNREEAASRM-DELWLERE-----PSVEEILS 61

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229
            +      K   +V  G GEP C   ++     +     G++     + L+T+G    + 
Sbjct: 62  DIRARDMAKYDEVVFCGYGEPTCRLKDILAIARVLKREYGVA-----VRLNTNGLAGTLY 116

Query: 230 ------RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
                    + + V +++SL+A   +  N L     +   E ++    +    +      
Sbjct: 117 GEDVTPWFADLVDV-VSVSLNAPDAEEYNALCRPQAEDAFEYMLRFAENAARFAKVYMTI 175

Query: 284 FEYVMLKGINDSPRDALNLIKILK 307
            + +  +G     R A      LK
Sbjct: 176 IDTMSEEGQAACRRIAEECGAALK 199


>gi|224371768|ref|YP_002605932.1| SucD4 [Desulfobacterium autotrophicum HRM2]
 gi|223694485|gb|ACN17768.1| SucD4 [Desulfobacterium autotrophicum HRM2]
          Length = 256

 Score = 37.2 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           ++  +  +       +   +     ++++D    +      + +T E +++KG+ND   D
Sbjct: 130 VSFKIDTLDEKTWRKINRPHNIIKFDVMLDGICSFAKKFTGQIVT-ETMLIKGLNDDMID 188

Query: 299 ALNLIKILKGIPA 311
                  ++GI  
Sbjct: 189 IEKTADFIRGINC 201


>gi|167042255|gb|ABZ06986.1| putative Radical SAM superfamily protein [uncultured marine
           crenarchaeote HF4000_ANIW93J19]
          Length = 343

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 67/208 (32%), Gaps = 10/208 (4%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           +     G  C +  V C     F  T   K       EEI+  ++  R  L      +  
Sbjct: 72  MEFSPAGMYCENRCVYCWRPMEFYETMEMKPENVAEPEEIMTNLMAERRKLIMGHYGDPN 131

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
           +           S+  +   GEP   +  +   +           + + I L T+G  P+
Sbjct: 132 QDKKKLDESLLPSHYAISLSGEPTM-YPKLPALIKYLKSFE----ATKSIFLVTNGQEPD 186

Query: 228 -IARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
            I ++G+E  +   L +S +A   +    +         E      +    L    R   
Sbjct: 187 MIQKLGDENALPTQLYLSTNAADYESFLKINRPRYDDSWERWNKTLKMLSTLDT--RTVL 244

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAK 312
              +++G ND+ +       +L+   A 
Sbjct: 245 RLTLIRGYNDNEKMIPAFASLLRQSNAH 272


>gi|213618828|ref|ZP_03372654.1| hypothetical protein SentesTyp_21135 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 35

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 357 DILAACGQLKSLS-KRIPKVPRQEMQ 381
           DI AACGQL      R  +  R+ MQ
Sbjct: 1   DIDAACGQLAGDVIDRTKRTLRKRMQ 26


>gi|168183531|ref|ZP_02618195.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Bf]
 gi|237796670|ref|YP_002864222.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Ba4
           str. 657]
 gi|182673365|gb|EDT85326.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Bf]
 gi|229263272|gb|ACQ54305.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Ba4
           str. 657]
          Length = 232

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 78/242 (32%), Gaps = 49/242 (20%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
           +G    IET+ + +     + V  Q GC L C +C+                       +
Sbjct: 1   MGKIHSIETMGLVDGPGIRVVVFFQ-GCQLRCVYCHNPD---------------TWDFNA 44

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS--------LSIASDSM 208
            +         + +      +++  I   G GEPL   + + +         +  A D+ 
Sbjct: 45  GIEISSDEVLKKVLRYKPYFKQVGGITCSG-GEPLMQPEFLLEILKKCKNQGIHTALDTS 103

Query: 209 GLSFSKRR-ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           G+     + I       + +I  + EE  + +        N  + ++  +N+K       
Sbjct: 104 GVGIGNYKEILQYVDLVILDIKHIEEEKYISICGKNMEEFNKFKRVVNKLNKK------- 156

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCE 325
                         +   +V++ GIND+          +       K+ L+P++     +
Sbjct: 157 --------------LWIRHVVVPGINDTAEHIYKFKDYINTFNNVEKVELLPYHTLGVSK 202

Query: 326 YL 327
           Y 
Sbjct: 203 YE 204


>gi|226950642|ref|YP_002805733.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A2
           str. Kyoto]
 gi|226844521|gb|ACO87187.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A2
           str. Kyoto]
          Length = 232

 Score = 36.8 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 78/242 (32%), Gaps = 49/242 (20%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
           +G    IET+ + +     + V  Q GC L C +C+                       +
Sbjct: 1   MGKIHSIETMGLVDGPGIRVVVFFQ-GCQLRCVYCHNPD---------------TWDFNA 44

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK--------SLSIASDSM 208
            +         + +      +++  I   G GEPL   + + +        S+  A D+ 
Sbjct: 45  GIEISSDEVLKKVLRYKPYFKQVGGITCSG-GEPLMQPEFLLEILKKCENQSIHTALDTS 103

Query: 209 GLSFSKRR-ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           G+       I       + +I  + EE  + +        N  + ++  +N+K       
Sbjct: 104 GVGIGNYEEILQYVDLVILDIKHIEEEKYIGICGKNMEEFNKFKRVVNKLNKK------- 156

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCE 325
                         +   +V++ GIND+          +       K+ L+P++     +
Sbjct: 157 --------------LWIRHVVVPGINDTGEHIYKFKDYINTFNNVEKVELLPYHTLGVSK 202

Query: 326 YL 327
           Y 
Sbjct: 203 YE 204


>gi|225174473|ref|ZP_03728472.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225170258|gb|EEG79053.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 291

 Score = 36.8 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 105 TVYIPEKSRGTLCVSSQVGCSLT-CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160
            VY P    G+L + + VGC    C+FC    Q   R  + +EI   + +AR   GD
Sbjct: 6   MVYRPPSEAGSLIIQATVGCPHNRCTFCSMYRQSRFRLRSVDEIKEDLAMARDYYGD 62


>gi|23016883|ref|ZP_00056635.1| COG1032: Fe-S oxidoreductase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 470

 Score = 36.8 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 28/175 (16%)

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM----- 238
            MG G  L     V   +    ++ G+      +  +            EE         
Sbjct: 211 FMGDGIGLREVGEVLDEIQYIMENYGI-TKFYFVDENFMQIKKYFYSFLEEKKNRGLNFT 269

Query: 239 -LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
            +A S     ++ R  +   +    L   +++       +  +RI  E            
Sbjct: 270 FIASSRIDEIDEERISIAKEHGLTALTTGVESVNQATLNAIDKRIDIE------------ 317

Query: 298 DALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
           DA   +K+L+  GI   +NLI      G E+    + D     E I+R+     +
Sbjct: 318 DAERAVKLLRQYGIRPHVNLI-----IGFEWE--SEDDYKAMLEFIERNDLRGTV 365


>gi|313891039|ref|ZP_07824658.1| glycyl-radical enzyme activating protein family protein
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120402|gb|EFR43522.1| glycyl-radical enzyme activating protein family protein
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 257

 Score = 36.8 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 47/223 (21%)

Query: 123 GCSLTCSFCYTGT-------QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175
           GC L C +C           Q L  +    E + +V     ++ +     D        +
Sbjct: 29  GCPLRCPWCANPESQKKQPEQMLKADGQTYETVGEVKTVDMVIEEVLKDVDFYEESGGGL 88

Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235
                 I           ++   K++  A+   GL        + T+ +  +  +  + I
Sbjct: 89  TLSGGEI--------FAQYE-FAKAILKAAKEKGL-----HTAIETTAYAKH-EQFVDLI 133

Query: 236 GV--MLAISLHAVSNDLR--------NILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285
                +   L   +  LR        N L+  N  Y  E+  +     P           
Sbjct: 134 QYVDFIYTDLKHYNQ-LRHRKMTGVANELIIKNIHYAFEIGKEIVLRIP----------- 181

Query: 286 YVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL 327
             ++   NDS  DA    ++   +    + L+PF+ +   +Y 
Sbjct: 182 --VIPNFNDSLEDAQAFSELFNQLQINEVQLLPFHQFGENKYK 222


>gi|294782458|ref|ZP_06747784.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
           1_1_41FAA]
 gi|294481099|gb|EFG28874.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium sp.
           1_1_41FAA]
          Length = 243

 Score = 36.8 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 79/214 (36%), Gaps = 34/214 (15%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC L C +C+        N+   E+            ++    +     +  V   ++  
Sbjct: 27  GCPLRCLYCH--------NVDTWELKD---------KNYIYTPNEILAELNKVKAFLTGG 69

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
           +    GEPL     + +         G+        L TSG++      +V E   ++L 
Sbjct: 70  ITASGGEPLMQASFILELFK-LCKENGI-----HTALDTSGYIFNDQAKKVLEYTDLVL- 122

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + +  +  D+   +  +     LE  +   ++   ++    +   YV+L G  D  +D  
Sbjct: 123 LDIKHIDKDMYKKITSV----DLEPTLKFIQYLQEINK--PVWLRYVLLPGYTDDIKDLN 176

Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYLCSDQK 332
           +  K +       +++++PF+     ++  ++++
Sbjct: 177 DWAKYVSQFDVVKRVDILPFHQMAIYKWEKTNRE 210


>gi|310644063|ref|YP_003948821.1| radical sam domain protein [Paenibacillus polymyxa SC2]
 gi|309249013|gb|ADO58580.1| Radical SAM domain protein [Paenibacillus polymyxa SC2]
          Length = 351

 Score = 36.8 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 57/164 (34%), Gaps = 24/164 (14%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
            C+L C +CY                   +++R          + +    P   +    I
Sbjct: 10  DCNLKCKYCYVSKVPK-------------MMSRETAAKAIDFTEKKLAANPLDPKDKIRI 56

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSF-SKRRITLSTSGFVPNIARV---GEEIGVM 238
            + G GEPL N+      +    + +      +    ++T+G + N   +    E I + 
Sbjct: 57  ALHG-GEPLLNY----PIIRYLVEELKQKIHGEVSFRMTTNGTIYNQEILDYVSENIQLT 111

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
           +++     S+D+    V  N K     +I+   +    S+  R+
Sbjct: 112 ISLDGKQESHDI--NRVYRNGKGSFNRVIETLDYINHQSHFFRV 153


>gi|161617604|ref|YP_001591569.1| hypothetical protein SPAB_05464 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553577|ref|ZP_02347326.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|168822537|ref|ZP_02834537.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194444516|ref|YP_002043593.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|200386594|ref|ZP_03213206.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205355095|ref|YP_002228896.1| hypothetical protein SG4176 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207859482|ref|YP_002246133.1| hypothetical protein SEN4103 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|161366968|gb|ABX70736.1| hypothetical protein SPAB_05464 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403179|gb|ACF63401.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|199603692|gb|EDZ02237.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205274876|emb|CAR39942.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205322004|gb|EDZ09843.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205341061|gb|EDZ27825.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206711285|emb|CAR35663.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|320088762|emb|CBY98520.1| L-lysine 2,3-aminomutase LAM; KAM [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|326630252|gb|EGE36595.1| hypothetical protein SG9_4262 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 342

 Score = 36.8 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 45/205 (21%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
               ++R  L V    GC++ C +C        R+    E                    
Sbjct: 105 LHKYQNRALLLVKG--GCAVNCRYC------FRRHFPYAE------------NQGNKRNW 144

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPL----CNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
              +   +   ++  I+  G G+PL       D +   L        L            
Sbjct: 145 TVALEYIAAHPELDEIIFSG-GDPLMAKDHELDWLLTQLEAIKHVKRLRI---------- 193

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
                 +R+   I   +   L A  +  R  ++ +N       + +A            +
Sbjct: 194 -----HSRLPIVIPARITDELVARFDQSRLQILLVNHINHANEVDEAFCLAMKKLRHVGV 248

Query: 283 TF--EYVMLKGINDSPRDALNLIKI 305
           T   + V+L+G+ND+   A  L  +
Sbjct: 249 TLLNQSVLLRGVNDN---ARTLANL 270


>gi|148381163|ref|YP_001255704.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A
           str. ATCC 3502]
 gi|153930820|ref|YP_001385538.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A
           str. ATCC 19397]
 gi|153935264|ref|YP_001388944.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A
           str. Hall]
 gi|148290647|emb|CAL84776.1| formate-lyase activating enzyme [Clostridium botulinum A str. ATCC
           3502]
 gi|152926864|gb|ABS32364.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A
           str. ATCC 19397]
 gi|152931178|gb|ABS36677.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum A
           str. Hall]
          Length = 232

 Score = 36.8 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 78/242 (32%), Gaps = 49/242 (20%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
           +G    IET+ + +     + V  Q GC L C +C+                       +
Sbjct: 1   MGKIHSIETMGLVDGPGIRVVVFFQ-GCQLRCVYCHNPD---------------TWDFNA 44

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK--------SLSIASDSM 208
            +         + +      +++  I   G GEPL   + + +        S+  A D+ 
Sbjct: 45  GIEISSDEVLKKVLRYKPYFKQVGGITCSG-GEPLMQPEFLLEILKKCKNQSIHTALDTS 103

Query: 209 GLSFSKRR-ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           G+       I       + +I  + EE  + +        N  + ++  +N+K       
Sbjct: 104 GVGIGNYEEILQYVDLVILDIKHIEEEKYIGICGKNMEEFNKFKRVVNKLNKK------- 156

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCE 325
                         +   +V++ GIND+          +       K+ L+P++     +
Sbjct: 157 --------------LWIRHVVVPGINDTGEHIYKFKDYINTFNNVEKVELLPYHTLGVSK 202

Query: 326 YL 327
           Y 
Sbjct: 203 YE 204


>gi|220904669|ref|YP_002479981.1| MiaB family RNA modification protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868968|gb|ACL49303.1| RNA modification enzyme, MiaB family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 506

 Score = 36.8 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 94/266 (35%), Gaps = 37/266 (13%)

Query: 69  SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128
            +  P+  +E  S   T                   +  I    R    +  Q GC+  C
Sbjct: 155 EVNRPQKAEEHAS---TT----MNADTNADAANSFPSFNISTFKRARPVLKVQDGCAHRC 207

Query: 129 SFCYTG-TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187
           ++C    T+   R+   E +L +   AR LL        I G+ +   GR          
Sbjct: 208 TYCIVPLTRGKPRSRPVEHVLAE---ARRLLESGHVEIMISGINLGQYGRDAQTGDFW-- 262

Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP----NIARVGEEIGVMLAISL 243
                   N+ ++L  A        ++ RI+    G +     +I R    +   L ISL
Sbjct: 263 --------NLLRTLDTALAPEFAGLARFRISSLEPGQLDERALDILRHCRMLCPHLHISL 314

Query: 244 HAVSNDLRNILVPINR-KYPLEMLIDACRHYPGLSNARRITFEYVMLKGI-NDSPRDALN 301
              S   RN+L  + R  Y   ML +A R      +   +     ++ G   ++ +D   
Sbjct: 315 QHGS---RNVLKRMGRGHYSPAMLEEAVRELSA--HWPAMGLGADIIAGFPGETEKDVQE 369

Query: 302 LIKILKGIP---AKINLIPFNPWPGC 324
           L++++  +P   A +   P++  PG 
Sbjct: 370 LLELVARLPLGYAHV--FPYSRRPGT 393


>gi|188590051|ref|YP_001922114.1| heme biosynthesis [Clostridium botulinum E3 str. Alaska E43]
 gi|188500332|gb|ACD53468.1| heme biosynthesis [Clostridium botulinum E3 str. Alaska E43]
          Length = 451

 Score = 36.8 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 71/196 (36%), Gaps = 23/196 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++   GC+L C +C+             E        + ++      + I+ +V  S
Sbjct: 96  AVCLNIIHGCNLRCKYCFADE---------GEYHGH----KGVMSLDVAKKAIDYVVKRS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVG 232
             RK   I + G GEP    D +K  +  A D+        R T++T+     P +    
Sbjct: 143 GPRKNIEIDLFG-GEPTMIMDTIKDIIKYARDNEKKWNKNIRFTMTTNATLLNPEMMDFM 201

Query: 233 EEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVM 288
           ++    + +SL     V++++R   +  +     + +I   +         +  +     
Sbjct: 202 DKEMGNIILSLDGRKCVNDNVR---IKADGSGSYDDIIPNIKEMIKRRTKGKTFYVRGTF 258

Query: 289 LKGINDSPRDALNLIK 304
            +   D   D + +I 
Sbjct: 259 TRNNTDFYEDVMAMIN 274


>gi|78187522|ref|YP_375565.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
 gi|78167424|gb|ABB24522.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273]
          Length = 612

 Score = 36.8 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 60/179 (33%), Gaps = 25/179 (13%)

Query: 123 GCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           GC  +CSFC  G      R  +AE ++ ++  A            I      +  ++   
Sbjct: 196 GCPWSCSFCANGQMHGKWRARSAENVVEEI--ALLHDQKMKKLLKIWDANFLTSIKRAER 253

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
           I  + +   L NF        I +++      +             + ++       + I
Sbjct: 254 ICDLMIERGLTNF-------RIMTETRAADLVRAE---------RILPKLKAVGLNKVGI 297

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
            + + + +   +L   N    +E  I  CR Y   +        Y +L  +N++  ++ 
Sbjct: 298 GIESPNPETLRLLNKQNTADDVEKAIALCRKYGIGTEG------YFILGSLNETASESR 350


>gi|187932645|ref|YP_001887172.1| heme biosynthesis [Clostridium botulinum B str. Eklund 17B]
 gi|187720798|gb|ACD22019.1| heme biosynthesis [Clostridium botulinum B str. Eklund 17B]
          Length = 451

 Score = 36.8 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 71/196 (36%), Gaps = 23/196 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++   GC+L C +C+             E        + ++      + I+ +V  S
Sbjct: 96  AVCLNIIHGCNLRCKYCFADE---------GEYHGH----KGVMSLDVAKKAIDYVVKRS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVG 232
             RK   I + G GEP    D +K  +  A D+        R T++T+     P +    
Sbjct: 143 GPRKNIEIDLFG-GEPTMIMDTIKDIIKYARDNEKKWNKNIRFTMTTNATLLNPEMMDFM 201

Query: 233 EEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVM 288
           ++    + +SL     V++++R   +  +     + +I   +         +  +     
Sbjct: 202 DKEMGNIILSLDGRKCVNDNVR---IKADGSGSYDDIIPNIKEMIKRRTKGKTFYVRGTF 258

Query: 289 LKGINDSPRDALNLIK 304
            +   D   D + +I 
Sbjct: 259 TRNNTDFYEDVMAMIN 274


>gi|222631669|gb|EEE63801.1| hypothetical protein OsJ_18625 [Oryza sativa Japonica Group]
          Length = 658

 Score = 36.8 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILA---ACGQLKSLSKRIPKVPRQEMQI 382
             F + +        IR   G DI     A G+L+   +R  +    + Q+
Sbjct: 255 EDFDQRLMDHFVKV-IRRKHGRDIAGDARALGKLRRECERAKRALSNQHQV 304


>gi|289578123|ref|YP_003476750.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter italicus Ab9]
 gi|289527836|gb|ADD02188.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter italicus Ab9]
          Length = 449

 Score = 36.8 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 27/173 (15%)

Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
              R    V  Q GC+  C++C        VR+   E+IL +V   R           + 
Sbjct: 152 YTERTRAYVKIQDGCNQYCTYCIIPYARGPVRSREPEKILEEV---RRFADSGYKEIVLT 208

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS---FSKRRITLSTSGFV 225
           G+ I S G+ + NI              +   +    +  G+     S       T  FV
Sbjct: 209 GIHIASYGKDLKNI-------------GLLDIIKRIHEIDGIKRIRLSSIEPVFLTEEFV 255

Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM---LIDACRHYPG 275
             IA++ +       +SL +  ++    L  + R+Y  +    +ID  R Y  
Sbjct: 256 KEIAKLPKMCR-HYHVSLQSGCDET---LKRMGRRYTTKEYKSVIDRLRKYIK 304


>gi|220934405|ref|YP_002513304.1| Lysine 2,3-aminomutase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995715|gb|ACL72317.1| Lysine 2,3-aminomutase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 348

 Score = 36.8 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 87/289 (30%), Gaps = 69/289 (23%)

Query: 92  FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151
           F    +G    +    +  K RG + + +   C++ C +C        R+    E     
Sbjct: 99  FVEDPVGDGAAMVAPGLLHKYRGRVLLVTTGACAVHCRYC------FRRHFPYGE----- 147

Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211
             A    G++    D         G    + V++  G+PL             SD     
Sbjct: 148 --ANPARGEWQAALDYIA------GDDSIHEVILSGGDPLS-----------LSDERLSG 188

Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP------------INR 259
            +         G +P++ R+         I    V  DL   L P              R
Sbjct: 189 LAGA------LGEIPHVRRLRVHSR-QPVILPERVDEDLLAWLRPGRFQTVLVIHANHAR 241

Query: 260 --KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
              +P+   +              +  + V+L+G+ND      +L + L         +P
Sbjct: 242 EIHWPVREALARLAR-----AGVSLLNQSVLLRGVNDDVDTLADLSETLSATGV----MP 292

Query: 318 F-----NPWPGCEYLCSDQKDIVTFSECIKRS--GYSSP--IRTPRGLD 357
           +     +P  G  +   D    +     ++    GY  P  +R   G D
Sbjct: 293 YYLHQLDPVRGASHFQVDDDRALRLHHGLRARLPGYLVPRLVREIPGQD 341


>gi|4758464|ref|NP_004457.1| glypican-5 precursor [Homo sapiens]
 gi|2829667|sp|P78333|GPC5_HUMAN RecName: Full=Glypican-5; Contains: RecName: Full=Secreted
           glypican-5; Flags: Precursor
 gi|1864085|gb|AAC51118.1| glypican-5 [Homo sapiens]
 gi|24981023|gb|AAH39730.1| Glypican 5 [Homo sapiens]
 gi|55661492|emb|CAH70260.1| glypican 5 [Homo sapiens]
 gi|55661518|emb|CAH71865.1| glypican 5 [Homo sapiens]
 gi|55957550|emb|CAC34558.2| glypican 5 [Homo sapiens]
 gi|55957885|emb|CAI13232.1| glypican 5 [Homo sapiens]
 gi|55957963|emb|CAI17090.1| glypican 5 [Homo sapiens]
 gi|189053507|dbj|BAG35673.1| unnamed protein product [Homo sapiens]
 gi|325463617|gb|ADZ15579.1| glypican 5 [synthetic construct]
          Length = 572

 Score = 36.8 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 97/328 (29%), Gaps = 60/328 (18%)

Query: 63  LLNQHFSIIYPEIVDE--KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
            + + + I   + + +  + S   T K+L+   A      +E     I +    T  +  
Sbjct: 72  KMEERYQIAARQDMQQFLQTSS-STLKFLISRNAAAFQETLET---LIKQAENYTSILFC 127

Query: 121 QVGCSLTCSFCYTGTQKLV--------RNLTAEEILLQV------LLARSLLGDFPGCED 166
               ++      +  +            ++  EE + +       L+   L+        
Sbjct: 128 STYRNMALEAAASVQEFFTDVGLYLFGADVNPEEFVNRFFDSLFPLVYNHLINPGVTDSS 187

Query: 167 IEGMVIPSVGRK-------ISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSFSK- 214
           +E      + R+       I   VM  MG  L       ++    + + + +  L FSK 
Sbjct: 188 LEYSECIRMARRDVSPFGNIPQRVMGQMGRSLLPSRTFLQALNLGIEVINTTDYLHFSKE 247

Query: 215 -------RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY--PLEM 265
                   +      G       +G  + VM     H         L P    Y   LE 
Sbjct: 248 CSRALLKMQYCPHCQGLALTKPCMGYCLNVMRGCLAHMA------ELNPHWHAYIRSLEE 301

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           L DA      + +   +   + +L  +ND+   A    + L        L   N   G  
Sbjct: 302 LSDAMHGTYDIGH---VLLNFHLL--VNDAVLQAHLNGQKL--------LEQVNRICGRP 348

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTP 353
                Q    +F +  ++ G  +  R  
Sbjct: 349 VRTPTQSPRCSFDQSKEKHGMKTTTRNS 376


>gi|150016877|ref|YP_001309131.1| nitrogenase cofactor biosynthesis protein NifB [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903342|gb|ABR34175.1| nitrogenase cofactor biosynthesis protein NifB [Clostridium
           beijerinckii NCIMB 8052]
          Length = 896

 Score = 36.8 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 46/185 (24%)

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD--------------- 206
           P     +  ++ S    +  + + G G+ L NFDNV+++L +  +               
Sbjct: 543 PEEAFAKYKLVKSKMDNLKVVGIAGPGDALANFDNVRETLKLIREHDPEVTFCLSTNGLM 602

Query: 207 -----SMGLSFSKRRITLSTSGFVPNI----ARVGEEIGVMLAISLHAVSNDLRNILVPI 257
                   ++     +T++ +   P I     +  + +GV         + +    ++  
Sbjct: 603 LPFYAEELINLGVSHVTVTMNAIDPKITAKVYKFVDYLGVTY-------TGEEAAQILLN 655

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-N-- 314
           N+       +   ++        ++    VMLKGIND       + K  K + A I N  
Sbjct: 656 NQ-------LSGIKYLADRGIMVKVNI--VMLKGINDH--HIEEVTKKAKELGAGITNIM 704

Query: 315 -LIPF 318
            +IP 
Sbjct: 705 QMIPV 709


>gi|218675279|ref|ZP_03524948.1| molybdenum cofactor biosynthesis protein A [Rhizobium etli GR56]
          Length = 348

 Score = 36.8 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 26/186 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C       +                    D    E+++ +    V + +  I 
Sbjct: 40  CDFRCTYCMAENMTFLP-----------------KKDLLTLEELDRLCCAFVAKGVRKIR 82

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           + G GEPL    N+   +    + +G    +  +T + S    +   + E     + +SL
Sbjct: 83  LTG-GEPLV-RKNIMYLVRRLGEKIGSGLDELTLTTNGSQLSRHAEELYECGVRRINVSL 140

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
             +  D    +        +   IDA +         +I    V LK  ND+     +L+
Sbjct: 141 DTLDPDKFRKITRWGDFAKVMEGIDAAQ-----KAGLKIKLNAVALKDFNDTE--MPDLL 193

Query: 304 KILKGI 309
           +   G 
Sbjct: 194 RFAHGR 199


>gi|198243525|ref|YP_002218222.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197938041|gb|ACH75374.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|326626024|gb|EGE32369.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 342

 Score = 36.8 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 45/205 (21%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
               ++R  L V    GC++ C +C        R+    E                    
Sbjct: 105 LHKYQNRALLLVKG--GCAVNCRYC------FRRHFPYAE------------NQGNKRNW 144

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPL----CNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
              +   +   ++  I+  G G+PL       D +   L        L            
Sbjct: 145 TVALEYIAAHPELDEIIFSG-GDPLMAKDHELDWLLTQLEAIKHVKRLRI---------- 193

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
                 +R+   I   +   L A  +  R  ++ +N       + +A            +
Sbjct: 194 -----HSRLPIVIPARITDELVARFDQSRLQILLVNHINHANEVDEAFCLAMKKLRHVGV 248

Query: 283 TF--EYVMLKGINDSPRDALNLIKI 305
           T   + V+L+G+ND+   A  L  +
Sbjct: 249 TLLNQSVLLRGVNDN---ARTLANL 270


>gi|284162535|ref|YP_003401158.1| radical SAM protein [Archaeoglobus profundus DSM 5631]
 gi|284012532|gb|ADB58485.1| Radical SAM domain protein [Archaeoglobus profundus DSM 5631]
          Length = 382

 Score = 36.8 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 23/176 (13%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC+  C FC     +  +    + I+             P     E   +     K    
Sbjct: 92  GCNFNCIFCSVDEGRFSKTRLVDYIVD------------PDYLLEEFRKVAEFKGKGVEA 139

Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240
            + G GEP   +  +   +    +   +      +++ T+G +    I    E     + 
Sbjct: 140 HIDGQGEPTL-YPYLVDFVRGLKEVREVEI----VSMQTNGVLLSEKIVDDLEGYMDRIN 194

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           +S+ A++ D+ N L     +YPL+M++    +         I   +  L G ND  
Sbjct: 195 LSISALTQDVANKLY--GVRYPLKMVLSIAEYIANSKIDLHIAPVW--LPGYNDDE 246


>gi|268323802|emb|CBH37390.1| conserved hypothetical protein, radical SAM superfamily [uncultured
           archaeon]
          Length = 230

 Score = 36.8 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 70/209 (33%), Gaps = 34/209 (16%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
            I    +    V +Q GC+  C +C+             E++   L A+      P  E 
Sbjct: 11  LIDYPGKICAIVFTQ-GCNFKCPYCHNP-----------ELVDPKLFAQ------PIPEA 52

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226
                + +   K+  + + G GEP    D +            L      + L T+G  P
Sbjct: 53  DIFGFLQTRRGKLDAVEITG-GEPTLQPD-LIDFTKKIKSLNFL------VKLDTNGSNP 104

Query: 227 NI-ARVGEEIGV-MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
            I   + E   V  LA+ L A     R I      +  ++  I+   H  GL    R T 
Sbjct: 105 GILRELIELNMVDYLAMDLKAPLERYREITNSNVDQAKIKDSIELIMH-AGLDYEFRTTV 163

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKI 313
               L        D L + K+++G    +
Sbjct: 164 VKSQL-----GKTDILAIGKLIRGSKRYV 187


>gi|115464027|ref|NP_001055613.1| Os05g0428600 [Oryza sativa Japonica Group]
 gi|46391140|gb|AAS90667.1| putative Luminal binding protein [Oryza sativa Japonica Group]
 gi|55733909|gb|AAV59416.1| putative luminal binding protein 5 [Oryza sativa Japonica Group]
 gi|113579164|dbj|BAF17527.1| Os05g0428600 [Oryza sativa Japonica Group]
          Length = 687

 Score = 36.8 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 335 VTFSECIKRSGYSSPIRTPRGLDILA---ACGQLKSLSKRIPKVPRQEMQI 382
             F + +        IR   G DI     A G+L+   +R  +    + Q+
Sbjct: 284 EDFDQRLMDHFVKV-IRRKHGRDIAGDARALGKLRRECERAKRALSNQHQV 333


>gi|325294868|ref|YP_004281382.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065316|gb|ADY73323.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 307

 Score = 36.8 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 26/176 (14%)

Query: 124 CSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
           CS+ C +C    T  + L R     E +                   E     S   +I 
Sbjct: 27  CSMDCLYCEVGKTTKKTLER----AEYV------------PFDTVKDELREFLSYKPEID 70

Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
            I   G GEP   F  + + +    +    ++S +   L+ +        + +  G+ + 
Sbjct: 71  YITFSGYGEPTL-FSRLGELVRWIKE----NYSYKLALLTNASLFHREDVLQDINGIDII 125

Query: 241 I-SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295
           + SL A +      +   ++   +EM+++             +  E + +KGINDS
Sbjct: 126 LPSLDAATQKTFKKINRPSQGLNIEMIVEGIEKLI-KKGGSEVWIETLFVKGINDS 180


>gi|229544354|ref|ZP_04433413.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 36D1]
 gi|229325493|gb|EEN91169.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 36D1]
          Length = 515

 Score = 36.8 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 24/213 (11%)

Query: 99  GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG-TQKLVRNLTAEEILLQVLLARSL 157
               IE++    K      V+   GC   C++C    T+   R+   E+I+ +V   R L
Sbjct: 199 EGDVIESLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEV---REL 255

Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217
                    + G  + + G+   ++   G+G+       +   L   +          RI
Sbjct: 256 AAKGYKEITLLGQNVNAYGKDFDDLEY-GLGD-------LMDDLRKINIP--------RI 299

Query: 218 TLSTSGFVPNIARVGEEI--GVMLAISLHAVSNDLRNILVPIN-RKYPLEMLIDACRHYP 274
             +TS       R+ E +     L   +H       + ++ I  RKY  E  ++  R   
Sbjct: 300 RFTTSHPRDFDDRLIEVLAKKGNLVEHIHLPVQSGSSEILKIMGRKYTREQYLELVRKIK 359

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILK 307
                  ++ + +++   N++       + + K
Sbjct: 360 AAIPDVALSTD-IIVGFPNETEEQFEETLSLYK 391


>gi|168263313|ref|ZP_02685286.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|205348035|gb|EDZ34666.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 342

 Score = 36.8 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 45/205 (21%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
               ++R  L V    GC++ C +C        R+    E                    
Sbjct: 105 LHKYQNRALLLVKG--GCAVNCRYC------FRRHFPYAE------------NQGNKRNW 144

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPL----CNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
              +   +   ++  I+  G G+PL       D +   L        L            
Sbjct: 145 KVALEYIAAHPELDEIIFSG-GDPLMAKDHELDWLLTQLEAIKHVKRLRI---------- 193

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
                 +R+   I   +   L A  +  R  ++ +N       + +A            +
Sbjct: 194 -----HSRLPIVIPARITDELVARFDQSRLQILLVNHINHANEVDEAFCLAMKKLRHVGV 248

Query: 283 TF--EYVMLKGINDSPRDALNLIKI 305
           T   + V+L+G+ND+   A  L  +
Sbjct: 249 TLLNQSVLLRGVNDN---ARTLANL 270


>gi|152991220|ref|YP_001356942.1| tRNA modifying enzyme [Nitratiruptor sp. SB155-2]
 gi|238066418|sp|A6Q526|RIMO_NITSB RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
           Short=S12 MTTase; Short=S12 methylthiotransferase;
           AltName: Full=Ribosome maturation factor RimO
 gi|151423081|dbj|BAF70585.1| tRNA modifying enzyme [Nitratiruptor sp. SB155-2]
          Length = 435

 Score = 36.8 bits (84), Expect = 6.4,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 68/223 (30%), Gaps = 26/223 (11%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167
           I   S     +    GC+  CSFC          L +  I   V   ++L+         
Sbjct: 130 IITGSNYHAYIKLSEGCNQQCSFCA--IPSFKGKLQSRPIEDIVQEIKNLVAKGYKDFTF 187

Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227
                 S  R        G+ E L         +    +  G+  S R + L  S   P 
Sbjct: 188 VSQDSSSYLRD------FGIQESL------VDLIHAVEEIEGI-MSARILYLYPSTTTPK 234

Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRK----YPLEMLIDACRHYPGLSNARRIT 283
           +        V +          + + L+   ++       + L+ A R  P         
Sbjct: 235 MIDAIANSPVFVNY-FEMPIQHISDSLLKKMKRGIGAQKTKELLYAMRAVPESFLRTS-- 291

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCE 325
              +++    +S  D   L++ L+     +INL  ++   G +
Sbjct: 292 ---LIVGHPGESEEDFHELVEFLEDFEFDRINLFAYSDEEGTK 331


>gi|170748996|ref|YP_001755256.1| molybdenum cofactor biosynthesis protein A [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655518|gb|ACB24573.1| molybdenum cofactor biosynthesis protein A [Methylobacterium
           radiotolerans JCM 2831]
          Length = 340

 Score = 36.8 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 33/212 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C L C++C +     +                    D    E+++ +    V R +  I 
Sbjct: 32  CDLRCTYCMSEQMTFLP-----------------RRDLLTLEELDRLCSAFVERGVRRIR 74

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSK-RRITLSTSG--FVPNIARVGEEIGVMLA 240
           + G GEPL   D V + L   S    L       +TL+T+G         +       + 
Sbjct: 75  LTG-GEPLVRRD-VIRLLESLS--RHLDTGTLDELTLTTNGTMLAHRARDLAACGVRRIN 130

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN-DSPRDA 299
           +SL  +     +    + R+  L +++D        +    +    V L+ +N D   D 
Sbjct: 131 VSLDTLDP---DRYRAVTRRGDLSVVLDGLD--AAQAAGLAVKLNVVALRDVNEDELED- 184

Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
             L++   G    + LI   P     +  + +
Sbjct: 185 --LVRFAHGRGMDLTLIEVMPLGDTGHDRATR 214


>gi|49087864|gb|AAT51506.1| PA1505 [synthetic construct]
          Length = 332

 Score = 36.8 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 27/174 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C +   + +          QVL    L            +    +G  +  I 
Sbjct: 25  CDFRCTYCMSEDMQFLPR-------DQVLSLEELY----------AVADAFIGLGVRRIR 67

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           + G GEPL     V+K ++     +G       + ++T+G    +     E+       L
Sbjct: 68  ITG-GEPL-----VRKGITGLLARLGQRAELEDLAITTNG--SQLRERAAELKAAGVRRL 119

Query: 244 HAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           +   + L R       R   LE ++D  +     +   RI    V+ KG ND  
Sbjct: 120 NVSLDSLQRERFAAFTRSDRLEQVLDGIQA-AREAGFERIKLNCVVQKGRNDDE 172


>gi|254239854|ref|ZP_04933176.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa 2192]
 gi|126193232|gb|EAZ57295.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa 2192]
          Length = 331

 Score = 36.8 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 27/174 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C +   + +          QVL    L            +    +G  +  I 
Sbjct: 25  CDFRCTYCMSEDMQFLPR-------DQVLSLEELY----------AVADAFIGLGVRRIR 67

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           + G GEPL     V+K ++     +G       + ++T+G    +     E+       L
Sbjct: 68  ITG-GEPL-----VRKGITGLLARLGQRAELEDLAITTNG--SQLRERAAELKAAGVRRL 119

Query: 244 HAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           +   + L R       R   LE ++D  +     +   RI    V+ KG ND  
Sbjct: 120 NVSLDSLQRERFAAFTRSDRLEQVLDGIQA-AREAGFERIKLNCVVQKGRNDDE 172


>gi|15596702|ref|NP_250196.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa
           PAO1]
 gi|107100939|ref|ZP_01364857.1| hypothetical protein PaerPA_01001969 [Pseudomonas aeruginosa PACS2]
 gi|218892620|ref|YP_002441489.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa
           LESB58]
 gi|254234601|ref|ZP_04927924.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa
           C3719]
 gi|313106505|ref|ZP_07792735.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa
           39016]
 gi|24212013|sp|Q9I3K7|MOAA2_PSEAE RecName: Full=Molybdenum cofactor biosynthesis protein A 2
 gi|9947461|gb|AAG04894.1|AE004579_6 molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa PAO1]
 gi|126166532|gb|EAZ52043.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa
           C3719]
 gi|218772848|emb|CAW28658.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa
           LESB58]
 gi|310879237|gb|EFQ37831.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa
           39016]
          Length = 331

 Score = 36.8 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 27/174 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C +   + +          QVL    L            +    +G  +  I 
Sbjct: 25  CDFRCTYCMSEDMQFLPR-------DQVLSLEELY----------AVADAFIGLGVRRIR 67

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           + G GEPL     V+K ++     +G       + ++T+G    +     E+       L
Sbjct: 68  ITG-GEPL-----VRKGITGLLARLGQRAELEDLAITTNG--SQLRERAAELKAAGVRRL 119

Query: 244 HAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           +   + L R       R   LE ++D  +     +   RI    V+ KG ND  
Sbjct: 120 NVSLDSLQRERFAAFTRSDRLEQVLDGIQA-AREAGFERIKLNCVVQKGRNDDE 172


>gi|157151170|ref|YP_001451063.1| formate acetyltransferase activating enzyme [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157075964|gb|ABV10647.1| formate acetyltransferase activating enzyme [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 258

 Score = 36.8 bits (84), Expect = 6.6,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 71/234 (30%), Gaps = 69/234 (29%)

Query: 123 GCSLTCSFC---------------YTGT----QKLVRNLTAEEILLQVLLARSLLGDFPG 163
           GC L C +C                T          R  +  EI+ +VL  R    +  G
Sbjct: 30  GCPLRCPWCSNPESQRMQPEPMLDATTKKNITMGEER--SVVEIIDEVLKDRDFYEESGG 87

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
              + G  I +                        K++  A+   G+        + T+ 
Sbjct: 88  GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 123

Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
           FV +  +  + I     +   L       H     ++N L+  N  Y             
Sbjct: 124 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKITGVKNELIVKNIHY------------- 169

Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL 327
             ++ + I     ++   N+S  DA     +   +   ++ L+PF+ +   +Y 
Sbjct: 170 AFTHQKTIVLRIPVIPNFNNSLEDAEQFATLFNELSIDQVQLLPFHQFGENKYK 223


>gi|15894268|ref|NP_347617.1| pyruvate-formate-lyase-activating enzyme [Clostridium
           acetobutylicum ATCC 824]
 gi|15023888|gb|AAK78957.1|AE007614_5 Pyruvate-formate-lyase-activating enzyme [Clostridium
           acetobutylicum ATCC 824]
 gi|325508395|gb|ADZ20031.1| Pyruvate-formate-lyase-activating enzyme [Clostridium
           acetobutylicum EA 2018]
          Length = 237

 Score = 36.4 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 85/238 (35%), Gaps = 38/238 (15%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
           +G    IET+ + +     + V  Q GC L C+FC+        N+ + E +     A  
Sbjct: 1   MGKIHSIETMGLVDGPGIRVVVFFQ-GCRLRCAFCHNPD---TWNVNSGEEIS----AEE 52

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216
           L+      ++                V    GEPL   + + + L       G++     
Sbjct: 53  LMLKVKRYKNYFDKSGGG--------VTCSGGEPLMQPEFLLEFLK-LCKENGIN----- 98

Query: 217 ITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
             + T+GF        E +     + + +  +++     LV  N        I     + 
Sbjct: 99  TVVDTAGFGCGSYE--EILKYTDLVLLDIKHINDTGYKDLVLGN--------IKEFYRFV 148

Query: 275 GLSNARRIT--FEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328
              N  ++T    +VM+ GI D+      L+ I+K I    K  ++P++     +Y  
Sbjct: 149 DKVNDLKVTTWVRHVMVPGITDNYDSMDKLVDIIKKIDKVEKFEILPYHTLGVKKYDK 206


>gi|239906338|ref|YP_002953079.1| hypothetical protein DMR_17020 [Desulfovibrio magneticus RS-1]
 gi|239796204|dbj|BAH75193.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 329

 Score = 36.4 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 70/226 (30%), Gaps = 30/226 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           CS  C +C  G            +   +  AR          D       +       + 
Sbjct: 39  CSFDCLYCEAG------------VTEALTTARKPYVPARRLLDELAAWKAAGHAPPDVVT 86

Query: 184 MMGMGEPLCN--FDNVKK-SLSIASDSMGLSFSKRRITLSTSGFVPNIA-RVGEEIGVML 239
           + G+GEP  N     V   +  +  D          +T S+    P++   + +   V+ 
Sbjct: 87  LGGLGEPCLNSELGAVIAGAKELFPD-----LPVAVLTNSSLMADPDVRLELAQADIVLP 141

Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
           ++     +   R  L   +    L  +      +   +   +I  E ++L GINDS  ++
Sbjct: 142 SMDTLVPAEYHR--LNRPHAAVGLTAIRQGLLDFRA-AYDGKIFLEVLLLAGINDSVENS 198

Query: 300 LNLIKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
             L    +         + L      PGC    +  + +  F   +
Sbjct: 199 ELLQGFCRELAPDRVDVVTLSRPGAHPGC--QAASAEALARFRAAL 242


>gi|332673635|gb|AEE70452.1| GTP-binding protein YchF [Helicobacter pylori 83]
          Length = 366

 Score = 36.4 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 55/181 (30%), Gaps = 32/181 (17%)

Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV----------GEEIGVMLAI 241
            N  +V   +   +D   +      I    +     I R+             +   L++
Sbjct: 111 DNITHVNDKIDPLNDIETIEL--ELILADIATLDKRIDRLQKALKSSKDAKNLLECALSL 168

Query: 242 SLHAVSNDLRNILVPINRKYPL---EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
            +H         L P  + +PL   E  ++  +    LSN + I    V  + +N     
Sbjct: 169 KMHL------EELKP-AKTFPLNASEAFLELDKELRFLSNKKMIYAANVGEEDLNALNEH 221

Query: 299 ALNLIKILKGIPAKINLIPFNPWP---GCEYLCSDQKDIVTFSECI--KRSGYSSPIRTP 353
           A  +    K   +      F         E +   + ++  F + +  + SG    IR  
Sbjct: 222 AKKVKNYAKDQNS-----EFVALCAKLEEEMVSMSEDEVKEFLQSLGVEESGLEKTIRLS 276

Query: 354 R 354
            
Sbjct: 277 F 277


>gi|204926922|ref|ZP_03218124.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204323587|gb|EDZ08782.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|322615499|gb|EFY12419.1| hypothetical protein SEEM315_10044 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618559|gb|EFY15448.1| hypothetical protein SEEM971_10303 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622028|gb|EFY18878.1| hypothetical protein SEEM973_17977 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627100|gb|EFY23892.1| hypothetical protein SEEM974_00362 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631059|gb|EFY27823.1| hypothetical protein SEEM201_05188 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637722|gb|EFY34423.1| hypothetical protein SEEM202_03729 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642386|gb|EFY38990.1| hypothetical protein SEEM954_03902 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645647|gb|EFY42172.1| hypothetical protein SEEM054_18690 [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650513|gb|EFY46921.1| hypothetical protein SEEM675_15304 [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653465|gb|EFY49795.1| hypothetical protein SEEM965_03844 [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659708|gb|EFY55951.1| hypothetical protein SEEM19N_08219 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662081|gb|EFY58297.1| hypothetical protein SEEM801_16251 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666170|gb|EFY62348.1| hypothetical protein SEEM507_03054 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672590|gb|EFY68701.1| hypothetical protein SEEM877_15409 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676020|gb|EFY72091.1| hypothetical protein SEEM867_14623 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680504|gb|EFY76542.1| hypothetical protein SEEM180_12388 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684602|gb|EFY80606.1| hypothetical protein SEEM600_17732 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192917|gb|EFZ78143.1| hypothetical protein SEEM581_21258 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197207|gb|EFZ82347.1| hypothetical protein SEEM501_11096 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201676|gb|EFZ86740.1| hypothetical protein SEEM460_21711 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206190|gb|EFZ91152.1| hypothetical protein SEEM020_11145 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213200|gb|EFZ98002.1| hypothetical protein SEEM6152_12673 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215572|gb|EGA00316.1| hypothetical protein SEEM0077_07868 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219558|gb|EGA04043.1| hypothetical protein SEEM0047_21028 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227861|gb|EGA12015.1| hypothetical protein SEEM0055_19496 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229030|gb|EGA13159.1| hypothetical protein SEEM0052_05250 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236358|gb|EGA20434.1| hypothetical protein SEEM3312_18736 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237522|gb|EGA21583.1| hypothetical protein SEEM5258_19717 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241812|gb|EGA25841.1| hypothetical protein SEEM1156_12637 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248039|gb|EGA31976.1| putative lysine aminomutase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254629|gb|EGA38440.1| putative lysine aminomutase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258311|gb|EGA41988.1| putative lysine aminomutase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259588|gb|EGA43222.1| hypothetical protein SEEM8284_10232 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265861|gb|EGA49357.1| putative lysine aminomutase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270305|gb|EGA53753.1| putative lysine aminomutase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 342

 Score = 36.4 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 45/205 (21%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
               ++R  L V    GC++ C +C        R+    E                    
Sbjct: 105 LHKYQNRALLLVKG--GCAVNCRYC------FRRHFPYAE------------NQGNKRNW 144

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPL----CNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
              +   +   ++  I+  G G+PL       D +   L        L            
Sbjct: 145 KVALEYIAAHPELDEIIFSG-GDPLMAKDHELDWLLTQLEAIKHVKRLRI---------- 193

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
                 +R+   I   +   L A  +  R  ++ +N       + +A            +
Sbjct: 194 -----HSRLPIVIPARITDELVARFDQSRLQILLVNHINHANEVDEAFCLAMKKLRHVGV 248

Query: 283 TF--EYVMLKGINDSPRDALNLIKI 305
           T   + V+L+G+ND+   A  L  +
Sbjct: 249 TLLNQSVLLRGVNDN---ARTLANL 270


>gi|15644072|ref|NP_229121.1| astB/chuR-related protein [Thermotoga maritima MSB8]
 gi|148270594|ref|YP_001245054.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1]
 gi|157364077|ref|YP_001470844.1| radical SAM domain-containing protein [Thermotoga lettingae TMO]
 gi|170289295|ref|YP_001739533.1| radical SAM domain-containing protein [Thermotoga sp. RQ2]
 gi|222100244|ref|YP_002534812.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
 gi|281412902|ref|YP_003346981.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
 gi|4981877|gb|AAD36391.1|AE001786_4 astB/chuR-related protein [Thermotoga maritima MSB8]
 gi|147736138|gb|ABQ47478.1| Radical SAM domain protein [Thermotoga petrophila RKU-1]
 gi|157314681|gb|ABV33780.1| Radical SAM domain protein [Thermotoga lettingae TMO]
 gi|170176798|gb|ACB09850.1| Radical SAM domain protein [Thermotoga sp. RQ2]
 gi|221572634|gb|ACM23446.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359]
 gi|281374005|gb|ADA67567.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10]
          Length = 463

 Score = 36.4 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 39/155 (25%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ-----KL-VRNLTAEEILLQVLLARSLLGD 160
            + +     L ++    C L C +CY             RN+                  
Sbjct: 75  LVKDNDILRLALNVSQVCRLKCRYCYANAGTYGNPGFMKRNV------------------ 116

Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220
                 +  +        + NI + G GEPL N + +++   I +      F+  RIT++
Sbjct: 117 -----LVRTLDFFLSNYNVHNIHIFG-GEPLLNIEMIEEMFRILTSKYAKKFNNLRITVA 170

Query: 221 TSGFVP--NIARV-------GEEIGVMLAISLHAV 246
           TS FV    I R         ++  + + +SL   
Sbjct: 171 TSLFVSEETINRFIKIYESYKDKFQIYMVVSLDGP 205


>gi|257869695|ref|ZP_05649348.1| pyruvate formate-lyase activating enzyme [Enterococcus gallinarum
           EG2]
 gi|257803859|gb|EEV32681.1| pyruvate formate-lyase activating enzyme [Enterococcus gallinarum
           EG2]
          Length = 251

 Score = 36.4 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 78/244 (31%), Gaps = 55/244 (22%)

Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
           GC + C FC+   T         T +++L + L  R   G+  G                
Sbjct: 29  GCRMRCEFCHNPDTWKIGAGIERTTDDVLEEALKYREFWGEKGGLT-------------- 74

Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234
                +  GEPL   D +      A        +    TL T G       P  ++  E 
Sbjct: 75  -----VSGGEPLLQLDFLIDLFRKAKA------AGVNTTLDTCGKPFTREEPFFSKFQEL 123

Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292
           + V   L   +  + ND    L   +     + +++  ++   ++    +   +V++   
Sbjct: 124 MTVTDLLLFDIKHIDNDAHKKLTTQSN----DNILEMAKYLSEINK--PVWIRHVLVPFR 177

Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFS 338
           +D     + L   +K +    K+ ++P++     ++                Q  +    
Sbjct: 178 SDYDEFLIRLDAFIKTLNNVDKVEILPYHTMGKYKWDELGLKYPLEGIEPPTQDRVKNAK 237

Query: 339 ECIK 342
           E + 
Sbjct: 238 ELLH 241


>gi|251780641|ref|ZP_04823561.1| heme biosynthesis [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084956|gb|EES50846.1| heme biosynthesis [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 451

 Score = 36.4 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 71/196 (36%), Gaps = 23/196 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++   GC+L C +C+             E        + ++      + I+ +V  S
Sbjct: 96  AVCLNIIHGCNLRCKYCFADE---------GEYHGH----KGVMSLDVAKKAIDYVVKRS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVG 232
             RK   I + G GEP    D +K  +  A D+        R T++T+     P +    
Sbjct: 143 GPRKNIEIDLFG-GEPTMIMDTIKDIIKYARDNEKKWNKNIRFTMTTNATLLNPEMMDFM 201

Query: 233 EEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVM 288
           ++    + +SL     +++++R   +  +     + +I   +         +  +     
Sbjct: 202 DKEMGNIILSLDGRKCINDNVR---IKADGSGSYDDIIPNIKEMIKRRTKGKTFYVRGTF 258

Query: 289 LKGINDSPRDALNLIK 304
            +   D   D + +I 
Sbjct: 259 TRNNTDFYEDVMAMIN 274


>gi|269137841|ref|YP_003294541.1| putative pyruvate-formate lyase-activating enzyme [Edwardsiella
           tarda EIB202]
 gi|267983501|gb|ACY83330.1| putative pyruvate-formate lyase-activating enzyme [Edwardsiella
           tarda EIB202]
 gi|304557895|gb|ADM40559.1| radical activating enzyme [Edwardsiella tarda FL6-60]
          Length = 287

 Score = 36.4 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 76/252 (30%), Gaps = 47/252 (18%)

Query: 117 CVSSQVGC----SLTCSFCYTGTQKLVRNLTAEEI---LLQVLLARSLLGDFPGCEDIEG 169
            +S Q G     +L C  C T  Q   R  +   +   +  VL+       F     + G
Sbjct: 61  ALSLQAGKVLWDALACQQCDTCLQGCPRQASPMALSLSVDDVLMQLRRQAAFIKGITVSG 120

Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS---KRRITLSTSGFVP 226
                    +  +      +P        ++L    DS G   S     R+     G + 
Sbjct: 121 GEATLQLPFLLALFQAIRRDPG------LQALDCLVDSNG-ELSEPGWTRLIPWCDGVM- 172

Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286
                         + L A  ++    L     +     ++ + R          +    
Sbjct: 173 --------------VDLKAWDDERHRWLTGRGNR----RILHSIRWLAQRRRLAELRL-- 212

Query: 287 VMLKGINDSPRDALNLIKI---LKGIPAKINLIPFNPW----PGCEYLCSDQKDIVTFSE 339
           +++   +D       L +    L  +P ++N   F+      P   +  + + D+   ++
Sbjct: 213 LVIPQHSDYLTHIDALAEFILSLGDVPVRLN--AFHHHGVYGPASAWQPAAKDDVERLAQ 270

Query: 340 CIKRSGYSSPIR 351
            ++  G  + IR
Sbjct: 271 ALETRGVGAVIR 282


>gi|254719054|ref|ZP_05180865.1| molybdenum cofactor biosynthesis protein A [Brucella sp. 83/13]
 gi|265984046|ref|ZP_06096781.1| molybdenum cofactor biosynthesis protein A [Brucella sp. 83/13]
 gi|306838976|ref|ZP_07471798.1| molybdenum cofactor biosynthesis protein A [Brucella sp. NF 2653]
 gi|264662638|gb|EEZ32899.1| molybdenum cofactor biosynthesis protein A [Brucella sp. 83/13]
 gi|306405943|gb|EFM62200.1| molybdenum cofactor biosynthesis protein A [Brucella sp. NF 2653]
          Length = 344

 Score = 36.4 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 43/217 (19%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C       +                    D    E+++ +    + + +  + 
Sbjct: 35  CDFRCTYCMAEHMTFLP-----------------KKDLLTLEELDRLCSVFIEKGVRKLR 77

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-------RITLSTSG--FVPNIARVGEE 234
           + G GEPL     V+K        +G + S+         +TL+T+G         + + 
Sbjct: 78  LTG-GEPL-----VRK---NIMHLIG-NLSRHLKSGALDELTLTTNGSQLARFAGELADC 127

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               + +SL  ++ +    +        +   IDA R          +    V LK  ND
Sbjct: 128 GVRRINVSLDTLNPEKFRTITRWGDLPRVLEGIDAAR-----KAGIHVKINAVALKDFND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +      LI+   G    + LI   P    E+  +DQ
Sbjct: 183 AE--IPELIRWAHGRGMDVTLIETMPMGEIEFDRTDQ 217


>gi|325293080|ref|YP_004278944.1| Molybdenum cofactor biosynthesis protein A [Agrobacterium sp.
           H13-3]
 gi|325060933|gb|ADY64624.1| Molybdenum cofactor biosynthesis protein A [Agrobacterium sp.
           H13-3]
          Length = 365

 Score = 36.4 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 66/191 (34%), Gaps = 35/191 (18%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C +     +                    D    E+++ +    + R +  + 
Sbjct: 56  CDFRCTYCMSEHMTFLP-----------------KKDLLTLEELDRLCSVFIQRGVRKLR 98

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSK---RRITLSTSG--FVPNIARVGEEIGVM 238
           + G GEPL     V+K++ +   ++G          +TL+T+G       A + +     
Sbjct: 99  LTG-GEPL-----VRKNIMMLVRNLGRHIGTGALDELTLTTNGSQLAKFAAELADCGVGR 152

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           + +SL  +       +        ++ +++        +   +I    V LK  N++   
Sbjct: 153 INVSLDTLDPQKFREITRWG---DIDRVMEGLD--AAQAAGIKIKLNAVALKDFNETE-- 205

Query: 299 ALNLIKILKGI 309
              L++   G 
Sbjct: 206 IPELMRFAHGR 216


>gi|153939886|ref|YP_001392565.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum F
           str. Langeland]
 gi|152935782|gb|ABS41280.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum F
           str. Langeland]
 gi|295320551|gb|ADG00929.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum F
           str. 230613]
          Length = 232

 Score = 36.4 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 76/242 (31%), Gaps = 49/242 (20%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
           +G    IET+ + +     + V  Q GC L C +C+                       +
Sbjct: 1   MGKIHSIETMGLVDGPGIRVVVFFQ-GCQLRCVYCHNPD---------------TWDFNA 44

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS--------LSIASDSM 208
            +         + +      +++  I   G GEPL   + + +         +    D+ 
Sbjct: 45  GIEISSDEVLKKVLRYKPYFKQVGGITCSG-GEPLMQPEFLLEILKKCKNQGIHTVLDTS 103

Query: 209 GLSFSKRR-ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           G+       I       + +I  + EE  + +        N  + ++  +N+K       
Sbjct: 104 GVGIGNYEEILQYVDLVILDIKHIEEEKYISICGKNMEEFNKFKRVVNKLNKK------- 156

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCE 325
                         +   +V++ GIND+          +       K+ L+P++     +
Sbjct: 157 --------------LWIRHVVVPGINDTAEHIYKFKDYINTFNNVEKVELLPYHTLGVSK 202

Query: 326 YL 327
           Y 
Sbjct: 203 YE 204


>gi|186683369|ref|YP_001866565.1| beta-ketoacyl synthase [Nostoc punctiforme PCC 73102]
 gi|186465821|gb|ACC81622.1| beta-ketoacyl synthase [Nostoc punctiforme PCC 73102]
          Length = 2274

 Score = 36.4 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 22/105 (20%)

Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGL-------------SNARRITFEYVMLKGIN 293
               R  L+P++ + P E L +  + Y  L             ++ RR+ +EY +    N
Sbjct: 436 DESDRVYLLPLSARSP-EALKEIAKAYRELLSGSLKLEDICYTASLRRVHYEYRLGLVGN 494

Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFS 338
            +   A  L   L+ IP        N      Y  S ++  + F 
Sbjct: 495 SAEELANQLQDFLEDIP--------NSDVNWGYQGSSRRQQIAFV 531


>gi|187776866|ref|ZP_02993339.1| hypothetical protein CLOSPO_00405 [Clostridium sporogenes ATCC
           15579]
 gi|187775525|gb|EDU39327.1| hypothetical protein CLOSPO_00405 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score = 36.4 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 79/251 (31%), Gaps = 67/251 (26%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLL 153
           +G    IET+ + +     + V  Q GC L C +C+   T        ++++EIL +VL 
Sbjct: 1   MGKIHSIETMGLVDGPGIRVVVFFQ-GCQLRCIYCHNPDTWDLNAGIEISSDEILKKVLR 59

Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
            +       G                        GEPL   + +   L I   S      
Sbjct: 60  YKPYFKQVGGITCSG-------------------GEPLMQPEFL---LEILKKSKNQGI- 96

Query: 214 KRRITLSTSGFVPN---------------IARVGEEIGVMLAISLHAVSNDLRNILVPIN 258
                L TSG                   I  + EE  + +        N  +++L  +N
Sbjct: 97  --HTALDTSGVGKGNYEEILQYVDLVILDIKHIEEEKYINICGKGMEEFNKFKHVLNKLN 154

Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLI 316
           +K                     +   +V++ GIND+          +       KI L+
Sbjct: 155 KK---------------------LWIRHVVVPGINDTVEHIYKFKDYINTFNNIEKIELL 193

Query: 317 PFNPWPGCEYL 327
           P++     +Y 
Sbjct: 194 PYHTLGVNKYE 204


>gi|312134287|ref|YP_004001625.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor owensensis OL]
 gi|311774338|gb|ADQ03825.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Caldicellulosiruptor owensensis OL]
          Length = 231

 Score = 36.4 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 82/233 (35%), Gaps = 43/233 (18%)

Query: 96  CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155
            +   ++I TV  P+K   T C     GC+ +C FCY                 Q++  +
Sbjct: 1   MLVDFMKISTVDYPKKIAAT-CFFG--GCNFSCPFCYNS---------------QLINFK 42

Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215
               D    + I    +      +  + + G GEP  N + + + +    +         
Sbjct: 43  GSFMD----DSIFFEYLDKRKGIVDAVCITG-GEPTLNEEYLTEFIKKIKNRS------L 91

Query: 216 RITLSTSGFVPN-IARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273
            + L T+G  P  + R+ + ++   +A+ + A          P    +     +D  R  
Sbjct: 92  VVKLDTNGSRPEVLQRLLDADLLDYVAMDVKAPLEK-----YPQITGFS---DVDKIRRS 143

Query: 274 PGLSNARRITFEYVMLKGIN-DSPRDALNLIKILKGIPAKINLI-PFNPWPGC 324
             +     I +E+      N  +  D LN+ ++LK     +  I P+   P  
Sbjct: 144 IEILKNSNIDYEFRTTVNKNLHTVEDILNIARLLKDAKLYV--IKPYKYTPEV 194


>gi|269121625|ref|YP_003309802.1| glycyl-radical enzyme activating protein family [Sebaldella
           termitidis ATCC 33386]
 gi|268615503|gb|ACZ09871.1| glycyl-radical enzyme activating protein family [Sebaldella
           termitidis ATCC 33386]
          Length = 260

 Score = 36.4 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 91/245 (37%), Gaps = 33/245 (13%)

Query: 123 GCSLTCSFCYT-GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           GC L C +C    +Q        E I  ++     + G+    E+I  +++  +   I +
Sbjct: 31  GCPLNCMWCSNPESQSFK----PEPIWDKIKKDYIITGECKTVEEIMEIILKDMDYYIES 86

Query: 182 I--VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-PNIARVGEEIGVM 238
              V +  GE L + +    +  +  +    +         TS F  P I     E   +
Sbjct: 87  EGGVTLSGGEVLSHPEF---AAELLKECKKHNI---HTACETSAFSSPEIFNNFTEYPDL 140

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298
           L I +    N     +        L+ ++   +H   +   + + F   ++ G NDS +D
Sbjct: 141 LIIDIKHYDNS--EHIKKTGV--SLKPILKNIKH--AILKKKNVLFRIPIIPGYNDSLKD 194

Query: 299 ALNLIKILKGIPA-KINLIPFNPWPGCEYLCSDQ------------KDIVTFSECIKRSG 345
           A N  ++LK     K+ L+PF+ +   +Y   ++            +D+  + E   R+ 
Sbjct: 195 AENFSRLLKLYNINKVELLPFHQFGKSKYKFLNRKYEFENTKQIYAEDLKEYKEVFLRNK 254

Query: 346 YSSPI 350
               I
Sbjct: 255 IECSI 259


>gi|254518526|ref|ZP_05130582.1| radical SAM domain-containing protein [Clostridium sp. 7_2_43FAA]
 gi|226912275|gb|EEH97476.1| radical SAM domain-containing protein [Clostridium sp. 7_2_43FAA]
          Length = 451

 Score = 36.4 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 74/196 (37%), Gaps = 23/196 (11%)

Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174
            +C++   GC+L C +C+    +   +             + ++      + I+ +V  S
Sbjct: 96  AVCLNIIHGCNLRCKYCFADEGEYNGH-------------KGVMSLETAKKAIDYVVKRS 142

Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVG 232
             R+   I + G GEP    D VK+ +  A ++        R T++T+      ++    
Sbjct: 143 GPRRNIEIDLFG-GEPTMIMDTVKEIIKYARENEKEWKKNIRFTMTTNATLLNDDMMDFM 201

Query: 233 EEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVM 288
           ++    + +SL     V++++R   + ++     + ++   +      +  +        
Sbjct: 202 DKEMGNIILSLDGRKCVNDNVR---IKVDGSGSYDDILPNIKKMIKKRTPGKMYYVRGTF 258

Query: 289 LKGINDSPRDALNLIK 304
            +   D   D + ++ 
Sbjct: 259 TRANTDFFEDVMAMVN 274


>gi|150389120|ref|YP_001319169.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149948982|gb|ABR47510.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 289

 Score = 36.4 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 75/209 (35%), Gaps = 20/209 (9%)

Query: 105 TVYIPEKSRGTLCVSSQVGCSLT-CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163
           +VY P     +L V + +GCS   C+FC     K+ R     EI   ++ AR    +   
Sbjct: 6   SVYRPPSEAYSLIVQTTIGCSHNACTFCDMYKDKVFRVRKLGEIEKDLIEAREQYNEVKK 65

Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223
               +G  +      + +I++            +           G+  + + I   T+ 
Sbjct: 66  IFLADGNSLALKTSDLKSILIK--------IKELFPECQRI----GVYSAPKDILRKTTE 113

Query: 224 FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283
            +  +  +G +I     + + + S+++   L  I +      +I+A +   G      +T
Sbjct: 114 ELSELQDLGLKI---AYLGVESGSDEI---LKKIKKGVTSAEMIEAGKKIVGSGIKLSVT 167

Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAK 312
                L G + S   A    +++  I   
Sbjct: 168 L-ISGLGGKDKSQEHAKESARVINEINPH 195


>gi|111222007|ref|YP_712801.1| putative molybdenum cofactor biosynthesis protein [Frankia alni
           ACN14a]
 gi|111149539|emb|CAJ61232.1| hypothetical protein; Putative molybdenum cofactor biosynthesis
           protein [Frankia alni ACN14a]
          Length = 381

 Score = 36.4 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 67/200 (33%), Gaps = 38/200 (19%)

Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161
           EIE   +P   R  L   +Q GC+L C  C +              L +V+         
Sbjct: 33  EIELRSMP---RYVLVELTQ-GCNLRCPMCRSHAIGYREREMPRSFLAEVVEVLFPTAQM 88

Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITL 219
                               + + G GE L     D+V +++           S+ R+  
Sbjct: 89  --------------------VDIRGWGESLLAPEIDDVIRAVDA-------HRSQCRVVT 121

Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYPGLSN 278
           + S   P    +  ++G M+ +SL +V  D+  ++    R   ++  +      Y   + 
Sbjct: 122 NLSFNRPATLDLLADVGAMVDVSLDSVHQDVLGVVRQGARFSAIDRNLRRLAGRYSSAAG 181

Query: 279 ----ARRITFEYVMLKGIND 294
                   T +   L G+ND
Sbjct: 182 HGSLRITATVQRATLAGLND 201


>gi|54310450|ref|YP_131470.1| hypothetical protein PBPRA3383 [Photobacterium profundum SS9]
 gi|46914891|emb|CAG21668.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 357

 Score = 36.4 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 71/228 (31%), Gaps = 47/228 (20%)

Query: 90  LRFPARCIGGPVE-----IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144
                     P++     I  +    K+R  + V    GC++ C +C        R+   
Sbjct: 100 FEVHDGYSLDPLKEQDNAIPGLLHKYKNRALMIVKG--GCAVNCRYC------FRRHFPY 151

Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN----VKKS 200
            +             +  G    +  +         N V++  G+PL   D+    +   
Sbjct: 152 SD-------------NKGGKTQWKKALNYIAEHPELNEVILSGGDPLMAKDHELAWLVDE 198

Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
           +        L     R+ +     +PN  R+ +E+  ++  S        R   + +   
Sbjct: 199 IESIPHIKRLRI-HTRLPV----VIPN--RITDELCTLIGNS--------RLQTILVTHI 243

Query: 261 YPLEMLIDACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKIL 306
                + D             +T   + V+L+GINDS      L + L
Sbjct: 244 NHANEINDELTDAMTKLKRVNVTLLNQGVLLRGINDSVEALTALSESL 291


>gi|300871581|ref|YP_003786454.1| radical SAM domain-containing protein [Brachyspira pilosicoli
           95/1000]
 gi|300689282|gb|ADK31953.1| radical SAM domain protein [Brachyspira pilosicoli 95/1000]
          Length = 812

 Score = 36.4 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 78/217 (35%), Gaps = 33/217 (15%)

Query: 106 VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL-VRNLTAEEILLQVLLARSLLGDFPGC 164
           V + E  +  + V    GC+ +C FC  G     VRN T E+I+   +   SL       
Sbjct: 237 VPLVEGIQNRISVEIARGCTHSCRFCLAGITYRPVRNRTIEKIVD--IAMESLEATGANT 294

Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224
            ++  +                +GE       + + L    +  G S S   + +  S  
Sbjct: 295 LNLFSLSADDYPH---------IGE-------LIEYLQTLGEHKGFSLSLPSLRID-SFD 337

Query: 225 VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
                R+ +     L  +L   S++LR  +     +  +  ++   +         +I  
Sbjct: 338 KETAERIAQFRKTGLTFALEVGSHELREKINKSMDEDAIYNILADVQ-----KMGWKIVK 392

Query: 285 EYVMLKGINDSPR-DALNLIKILKGI------PAKIN 314
            Y M+ G  D+P  +A  +I+ L+ +        KIN
Sbjct: 393 IYFMI-GFTDNPEKEADEIIEALEKMLEVSKKKVKIN 428


>gi|303245053|ref|ZP_07331373.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
 gi|302484572|gb|EFL47516.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1]
          Length = 453

 Score = 36.4 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 37/222 (16%)

Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG--DFPGCE 165
           + ++    + V    GC++ C FC           + +E   Q    R      D     
Sbjct: 120 LIDRGTNIIQVRGLSGCNINCPFC-----------SVDE--GQYSKTRKNDYYVDLDYLV 166

Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNF---DNVKKSLSIASDSMGLSFSKRRITLSTS 222
           D    ++   G K     + G GEP   +   D V+K   I S   G+      +T+ ++
Sbjct: 167 DEYKKIVEFKGNKHLEAHLDGQGEPSLYYPLPDLVQKLNEINSKGNGI------VTMQSN 220

Query: 223 G---FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279
           G       I  + E     + +S++A  N+  + ++  +R Y +  ++D   +    ++ 
Sbjct: 221 GTKLSYKLIDELEEAGLHRINLSINA-LNEKMSRILSGSRDYNINHILDIAEYI--KNSK 277

Query: 280 RRITFEYVMLKGINDSP-----RDALNLIKILKGIPAKINLI 316
             +    ++L  IND         A+ L +  K     IN I
Sbjct: 278 IHLLIAPLLLPNINDEEFKKVIDYAVQLER--KNPQNIINPI 317


>gi|297569348|ref|YP_003690692.1| lysine 2,3-aminomutase YodO family protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925263|gb|ADH86073.1| lysine 2,3-aminomutase YodO family protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 360

 Score = 36.4 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 77/245 (31%), Gaps = 45/245 (18%)

Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168
             + R  L V+ Q  C++ C FC    +   R + A     Q+  A + L   P   D  
Sbjct: 102 KYRDRALLLVTGQ--CAMYCRFCTRKRKVGTREMAAAGSAAQLDAALAYLEQTPAIHD-- 157

Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFD----NVKKSLSIASDSMGLSFSKRRITLSTSGF 224
                         V++  G+PL   D     +   L        +     R+  +    
Sbjct: 158 --------------VLISGGDPLLLPDGRLIPLLTRLRRIRHLEIIRLG-SRVPCTL--P 200

Query: 225 VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284
                ++   +     + ++   N  R  + P   +        AC+          +  
Sbjct: 201 QRVTLKLAAALKKFHPLFINTHFNHPR-EITPEAAR--------ACQRLADA--GIPLGN 249

Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKINLIPF-----NPWPGCEYLCSDQKDIVTFSE 339
           + V+LKG+ND       L++ L  I  K    P+     +   G ++  +  +  +    
Sbjct: 250 QTVLLKGVNDDAATIRELMRGLLKIRVK----PYYLFQGDLSRGTDHFRTPVEQGLAIMR 305

Query: 340 CIKRS 344
            +   
Sbjct: 306 ELIGH 310


>gi|221195163|ref|ZP_03568219.1| pyruvate formate-lyase-activating enzyme [Atopobium rimae ATCC
           49626]
 gi|221185066|gb|EEE17457.1| pyruvate formate-lyase-activating enzyme [Atopobium rimae ATCC
           49626]
          Length = 330

 Score = 36.4 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 13/98 (13%)

Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWP 322
           E +++  R +    N  R+     ++ G NDS  +   +   +  I   + NL+PF+   
Sbjct: 225 ERILNNIRAFASSGNHTRLILRAPVIPGFNDSEENFSRVADFMNEIGLDEFNLLPFHRLG 284

Query: 323 GCEY------------LCSDQKDIVTFSECIKRSGYSS 348
             ++              +    +    + +       
Sbjct: 285 VSKWEELSMEYAFKNEQPTSPHTLAKLQKVLLDRNIKC 322


>gi|322807528|emb|CBZ05103.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum
           H04402 065]
          Length = 232

 Score = 36.4 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 77/242 (31%), Gaps = 49/242 (20%)

Query: 97  IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156
           +G    IET+ + +     + V  Q GC L C +C+                       +
Sbjct: 1   MGKIHSIETMGLVDGPGIRVVVFFQ-GCQLRCVYCHNPD---------------TWDFNA 44

Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS--------LSIASDSM 208
            +         + +      +++  I   G GEPL   + + +         +  A D+ 
Sbjct: 45  GIEISSDEVLKKVLRYKPYFKQVGGITCSG-GEPLMQPEFLLEILKKCKNQGIHTALDTS 103

Query: 209 GLSFSKRR-ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267
           G+       I       + +I  + EE  + +        N  + ++  +N+K       
Sbjct: 104 GVGIGNYEEILQYVDLVILDIKHIEEEKYISICGKNMEEFNKFKRVVNKLNKK------- 156

Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCE 325
                         +   +V++ GIND+          +       K+ L+P++     +
Sbjct: 157 --------------LWIRHVVVPGINDTAEHIYKFKDYINTFNNVEKVELLPYHTLGVSK 202

Query: 326 YL 327
           Y 
Sbjct: 203 YE 204


>gi|325681167|ref|ZP_08160697.1| biotin synthase [Ruminococcus albus 8]
 gi|324107089|gb|EGC01375.1| biotin synthase [Ruminococcus albus 8]
          Length = 323

 Score = 36.4 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 66/246 (26%), Gaps = 33/246 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C FC         N T  E                     E       G    +IV
Sbjct: 62  CPENCKFCAQSAH----NCTGVE---------EYGFLDTDKILAECRHNEERGVHRFSIV 108

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
             G      +F+    +    S    +         ++ G +        ++        
Sbjct: 109 TAGRTVSGADFEKALDAYRTLSRECKIDL------CASHGLL--TEEQMRQLKAAGVSRY 160

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HA     R     I   +  E  ++  R                M +   D    AL L 
Sbjct: 161 HANIETSRRNFPNICTTHTFEDKLECIRRAKAAGLEVCSGGIIGMGESREDRLDMALELS 220

Query: 304 KILKGIPAK-IN-LIPFNPWPGCEYLCSDQKDIVT----FSECIKRSGYSSPIRTPRGLD 357
           +   G+ +  IN LIP    P  +     + DI+     F   +  +      R   G D
Sbjct: 221 E--AGVRSVPINALIPVKGTPLEDLERITEADILRTVAIFRFILPEADI----RLAAGRD 274

Query: 358 ILAACG 363
           ++A CG
Sbjct: 275 LMANCG 280


>gi|254445339|ref|ZP_05058815.1| radical SAM domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198259647|gb|EDY83955.1| radical SAM domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 326

 Score = 36.4 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 77/226 (34%), Gaps = 30/226 (13%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C+  C +C        R +  +E        R          ++E  +      K+ +IV
Sbjct: 27  CNWDCVYC---QLGATR-VLVDE-------PREYSPARDIVGELEFALAHLGLEKLDHIV 75

Query: 184 MMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSG---FVPNIARVGEEIGVM 238
           + G GE L   D   + + + + +D          + + T+G       + R   +  ++
Sbjct: 76  LEGSGETLLYADTGELIQKIKLLTD--------VPLAVVTNGSLLIRDEVRRPILDADII 127

Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR- 297
           L  S  A   +L   +   +        ++            ++  E ++++G+ND+   
Sbjct: 128 LP-SFDAAHTELFERINRPHFSCSYNKQLEGLC-LLREEYGGKLWVEVMLIRGVNDTEEA 185

Query: 298 --DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341
             D   + ++++     + L P  P          ++ I+     +
Sbjct: 186 LKDLEAIFEMIEPDEIHLKL-PHRPVSEAWVRPPTEEGIMRAVSIL 230


>gi|297618965|ref|YP_003707070.1| Radical SAM domain-containing protein [Methanococcus voltae A3]
 gi|297377942|gb|ADI36097.1| Radical SAM domain protein [Methanococcus voltae A3]
          Length = 297

 Score = 36.4 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 70/209 (33%), Gaps = 31/209 (14%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C++ C FC        R+L  E +  +       +      ED    ++  +   I  I 
Sbjct: 37  CNIACRFC-------KRSLGDESLCEERPGVAHHILKPADVEDYLNDLLKKMDN-IKVIG 88

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLAI 241
           + G G+ L N     ++L I  +     F +    LST+G        R+ +     +  
Sbjct: 89  IAGPGDSLFN-KETFETLEILQEK----FPEMIRCLSTNGLLLPKYAKRLADLGVKTVTT 143

Query: 242 SLHAVSNDLR----NILVPINRKYPLEMLIDACRHYPGLSNARRITFEY--------VML 289
           +++AV   ++    + +    +    E                +  +EY        V++
Sbjct: 144 TVNAVDPKIQAQICDWIYYEGKVLKGEEGAKVLIE--NQIEGVKKAYEYDLAVKINTVLI 201

Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPF 318
             IN      + + K  K      N+IP 
Sbjct: 202 PEING--EHIVEVAKTFKDYAFVQNIIPL 228


>gi|116049449|ref|YP_791748.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296390127|ref|ZP_06879602.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa
           PAb1]
 gi|115584670|gb|ABJ10685.1| molybdopterin biosynthetic protein A2 [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 331

 Score = 36.4 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 27/174 (15%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C +   + +          QVL    L            +    +G  +  I 
Sbjct: 25  CDFRCTYCMSEDMQFLPR-------DQVLSLEELY----------AVADAFIGLGVRRIR 67

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243
           + G GEPL     V+K ++     +G       + ++T+G    +     E+       L
Sbjct: 68  ITG-GEPL-----VRKGIAGLLARLGQRAELEDLAITTNG--SQLRERAAELKAAGVRRL 119

Query: 244 HAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
           +   + L R       R   LE ++D  +     +   RI    V+ KG ND  
Sbjct: 120 NVSLDSLQRERFAAFTRSDRLEQVLDGIQA-AREAGFERIKLNCVVQKGRNDDE 172


>gi|327399682|ref|YP_004340551.1| Radical SAM domain-containing protein [Hippea maritima DSM 10411]
 gi|327182311|gb|AEA34492.1| Radical SAM domain protein [Hippea maritima DSM 10411]
          Length = 338

 Score = 36.4 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 33/231 (14%)

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGC+  C  C            A  ++  V     ++ D             +       
Sbjct: 80  VGCNFNCLNCQNADISQYPKENAGAVVGDVYPPEKVVEDAISAGCKSIAYTYT------- 132

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
                  EP   F+    +    +   GL    + I ++          + + +     +
Sbjct: 133 -------EPTIFFEYAIDTAK-LAKEKGL----KNIFITNGYMTKETIDMMDGLIDAANV 180

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
            L A ++     +    R  P+   I+        S    +    +++   ND P +A+ 
Sbjct: 181 DLKAFNDAFYMQICGGARLKPVLESIE-----YMKSKGIWVEVTTLVIPTANDDPAEAMQ 235

Query: 302 LIKILKGIPAKINLIPFN---PWPGCEYL---CSDQKDIVTFSECIKRSGY 346
           + + +  I      IP++    +P  ++     +  + I  F +     G 
Sbjct: 236 IAEHIYNIDPS---IPWHISRFYPAYKFSDVMPTPPEVIKNFRQIGLSIGL 283


>gi|213052305|ref|ZP_03345183.1| hypothetical protein Salmoneentericaenterica_04842 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213428698|ref|ZP_03361448.1| hypothetical protein SentesTyphi_26121 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 342

 Score = 36.4 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 45/205 (21%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
               ++R  L V    GC++ C +C        R+    E                    
Sbjct: 105 LHKYQNRALLLVKG--GCAVNCRYC------FRRHFPYAE------------NQGNKRNW 144

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPL----CNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
              +   +   ++  I+  G G+PL       D +   L        L            
Sbjct: 145 TVALEYIAAHPELDEIIFSG-GDPLMAKDHELDWLLTQLEAIKHVKRLRI---------- 193

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
                 +R+   I   +   L A  +  R  ++ +N       + +A            +
Sbjct: 194 -----HSRLPIVIPARITDELVARFDQSRLQILLVNHINHANEVDEAFCLAMKKLRHVGV 248

Query: 283 TF--EYVMLKGINDSPRDALNLIKI 305
           T   + V+L+G+ND+   A  L  +
Sbjct: 249 TLLNQSVLLRGVNDN---AQTLANL 270


>gi|168231369|ref|ZP_02656427.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194472138|ref|ZP_03078122.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194458502|gb|EDX47341.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205334318|gb|EDZ21082.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 342

 Score = 36.4 bits (83), Expect = 8.3,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 45/205 (21%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
               ++R  L V    GC++ C +C        R+    E                    
Sbjct: 105 LHKYQNRALLLVKG--GCAVNCRYC------FRRHFPYAE------------NQGNKRNW 144

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPL----CNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
              +   +   ++  I+  G G+PL       D +   L        L            
Sbjct: 145 TVALEYIAAHPELDEIIFSG-GDPLMAKDHELDWLLTQLEAIKHVKRLRI---------- 193

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
                 +R+   I   +   L A  +  R  ++ +N       + +A            +
Sbjct: 194 -----HSRLPIVIPARITDELVARFDQSRLQILLVNHINHANEVDEAFCLAMKKLRHAGV 248

Query: 283 TF--EYVMLKGINDSPRDALNLIKI 305
           T   + V+L+G+ND+   A  L  +
Sbjct: 249 TLLNQSVLLRGVNDN---ARTLANL 270


>gi|119629332|gb|EAX08927.1| glypican 5 [Homo sapiens]
          Length = 524

 Score = 36.4 bits (83), Expect = 8.3,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 97/328 (29%), Gaps = 60/328 (18%)

Query: 63  LLNQHFSIIYPEIVDE--KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
            + + + I   + + +  + S   T K+L+   A      +E     I +    T  +  
Sbjct: 72  KMEERYQIAARQDMQQFLQTSS-STLKFLISRNAAAFQETLET---LIKQAENYTSILFC 127

Query: 121 QVGCSLTCSFCYTGTQKLV--------RNLTAEEILLQV------LLARSLLGDFPGCED 166
               ++      +  +            ++  EE + +       L+   L+        
Sbjct: 128 STYRNMALEAAASVQEFFTDVGLYLFGADVNPEEFVNRFFDSLFPLVYNHLINPGVTDSS 187

Query: 167 IEGMVIPSVGRK-------ISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSFSK- 214
           +E      + R+       I   VM  MG  L       ++    + + + +  L FSK 
Sbjct: 188 LEYSECIRMARRDVSPFGNIPQRVMGQMGRSLLPSRTFLQALNLGIEVINTTDYLHFSKE 247

Query: 215 -------RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY--PLEM 265
                   +      G       +G  + VM     H         L P    Y   LE 
Sbjct: 248 CSRALLKMQYCPHCQGLALTKPCMGYCLNVMRGCLAHMA------ELNPHWHAYIRSLEE 301

Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325
           L DA      + +   +   + +L  +ND+   A    + L        L   N   G  
Sbjct: 302 LSDAMHGTYDIGH---VLLNFHLL--VNDAVLQAHLNGQKL--------LEQVNRICGRP 348

Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTP 353
                Q    +F +  ++ G  +  R  
Sbjct: 349 VRTPTQSPRCSFDQSKEKHGMKTTTRNS 376


>gi|260566493|ref|ZP_05836963.1| molybdenum cofactor biosynthesis protein A [Brucella suis bv. 4
           str. 40]
 gi|260156011|gb|EEW91091.1| molybdenum cofactor biosynthesis protein A [Brucella suis bv. 4
           str. 40]
          Length = 344

 Score = 36.4 bits (83), Expect = 8.3,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 43/217 (19%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C       +                    D    E+++ +    + + +  + 
Sbjct: 35  CDFRCTYCMAEHMTFLP-----------------KKDLLTLEELDRLYSVFIEKGVRKLR 77

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-------RITLSTSG--FVPNIARVGEE 234
           + G GEPL     V+K        +G + S+         +TL+T+G         + + 
Sbjct: 78  LTG-GEPL-----VRK---NIMHLIG-NLSRHLKSGALDELTLTTNGSQLARFAGELADC 127

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               + +SL  ++ +    +        +   IDA +          +    V LK  ND
Sbjct: 128 GVRRINVSLDTLNPEKFRTITRWGDLSRVLEGIDAAQ-----KAGIHVKINAVALKDFND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +      LI+   G    + LI   P    E+  +DQ
Sbjct: 183 AE--IPELIRWAHGRGMDVTLIETMPMGEIEFDRTDQ 217


>gi|285808603|gb|ADC36122.1| putative 2-methylthioadenine synthetase [uncultured bacterium 253]
          Length = 432

 Score = 36.4 bits (83), Expect = 8.4,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 61/195 (31%), Gaps = 22/195 (11%)

Query: 118 VSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176
           +    GC   C+FC+        R+     I+ +   A  L  +      +        G
Sbjct: 133 IKIAEGCDRPCAFCFIPQMRGHFRSRRFGSIVAE---AHQLAXEGVKELILVAQDSSRYG 189

Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236
             +      G  + L +       L   S + G+ + +      T      +  + EE  
Sbjct: 190 EDL------GKQDALAHL------LRELSHTDGIEWVRVMYXYPTHISDAFLDVLAEEAK 237

Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               L + L   S ++  ++     +  LE LI   R       A R TF      G  D
Sbjct: 238 AVKYLDMPLQHASQNVLKLMKRGGNRASLEKLIRRVRERVP-GIAVRTTF-ITGFPGETD 295

Query: 295 SPRDALNLIKILKGI 309
              D   L+  +K +
Sbjct: 296 --EDFEELLTFIKNV 308


>gi|289192688|ref|YP_003458629.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288939138|gb|ADC69893.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 441

 Score = 36.4 bits (83), Expect = 8.6,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 80/240 (33%), Gaps = 48/240 (20%)

Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182
           GC   C FC                     LAR++       +  + M +   G K++ +
Sbjct: 174 GCPRRCRFC---------------------LARAIYYPPRFRKLDDLMYLAEEGVKVNKV 212

Query: 183 VMMGMGEP-LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241
             + +  P + ++  + +  +   D   +  S   +   T     ++ R+ +     L I
Sbjct: 213 NKVALIAPSVGDYKYIVELCNFL-DEKDIQISPSSLRADT--LNDDLMRILK--PKTLTI 267

Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301
           +  A S  LR  +    ++  +   ID  + +            Y M+    ++  D   
Sbjct: 268 APEAGSERLREFIKKDIKEEDIANAIDLAKKFGVEKIKL-----YFMVGIPTETDEDIEE 322

Query: 302 LIKILKGIP-------AKIN-LIPFNPWPGCEYLC-----SDQKDIVTFSECIKRSGYSS 348
           LI + K I          IN +IP    P  ++       S +K I    + ++R     
Sbjct: 323 LINLTKKIKKDIRRVEISINPMIP---KPHTDFEAEEFDLSSKKKIRYIEKSLRRENIKV 379


>gi|254467660|ref|ZP_05081068.1| radical SAM domain protein [Rhodobacterales bacterium Y4I]
 gi|206684234|gb|EDZ44719.1| radical SAM domain protein [Rhodobacterales bacterium Y4I]
          Length = 474

 Score = 36.0 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 83/260 (31%), Gaps = 37/260 (14%)

Query: 83  DGTRKWLLRFPARCIGGPVEIE--TVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140
           DG    L+R      G P++ E   + I      T+ ++   GC+L CS+CY        
Sbjct: 69  DG----LVRLDIVNDGRPLQPERPPIEIETFPLTTIVLNVNTGCNLACSYCYKEDLA--- 121

Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200
                     V      +      +  E ++  +  R   NIV  G GEPL N   +++ 
Sbjct: 122 ----------VPSKGQKMAFDTARKSAEMLLAENPDRDSYNIVFFG-GEPLSNLPLIRQV 170

Query: 201 LSIASDSMGLSFSKR---RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257
           +  A +    +  K     +T + +     +    +E    L +S+             +
Sbjct: 171 VDWA-EPHFAALGKAVNFSLTTNATLLTEPLIDWLDEHRFGLTVSIDGPKAQHDLNRKTV 229

Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317
             K   + +    R       ++ +     +  G+ +      +L          IN I 
Sbjct: 230 GGKGTYDTVAAKARLLLSRYTSKPVGARVTLTAGVTNIVEIWDHL----------INDI- 278

Query: 318 FNPWPGCEYLCSDQKDIVTF 337
              +    +      ++  F
Sbjct: 279 --GFAEVGFSPVTSGEMDAF 296


>gi|16767582|ref|NP_463197.1| aminomutase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167994785|ref|ZP_02575876.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168244887|ref|ZP_02669819.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194447368|ref|YP_002048381.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197248033|ref|YP_002149252.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263424|ref|ZP_03163498.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|16422895|gb|AAL23156.1| putative aminomutase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194405672|gb|ACF65891.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197211736|gb|ACH49133.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197241679|gb|EDY24299.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205327405|gb|EDZ14169.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205336322|gb|EDZ23086.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|261249429|emb|CBG27293.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996666|gb|ACY91551.1| putative aminomutase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160825|emb|CBW20356.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312915434|dbj|BAJ39408.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321223208|gb|EFX48278.1| Lysine 2,3-aminomutase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323132674|gb|ADX20104.1| putative aminomutase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332991147|gb|AEF10130.1| putative aminomutase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 342

 Score = 36.0 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 45/205 (21%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
               ++R  L V    GC++ C +C        R+    E                    
Sbjct: 105 LHKYQNRALLLVKG--GCAVNCRYC------FRRHFPYAE------------NQGNKRNW 144

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPL----CNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
              +   +   ++  I+  G G+PL       D +   L        L            
Sbjct: 145 TVALEYIAAHPELDEIIFSG-GDPLMAKDHELDWLLTQLEAIKHVKRLRI---------- 193

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
                 +R+   I   +   L A  +  R  ++ +N       + +A            +
Sbjct: 194 -----HSRLPIVIPARITDELVARFDQSRLQILLVNHINHANEVDEAFGLAMKKLRHVGV 248

Query: 283 TF--EYVMLKGINDSPRDALNLIKI 305
           T   + V+L+G+ND+   A  L  +
Sbjct: 249 TLLNQSVLLRGVNDN---ARTLANL 270


>gi|254693681|ref|ZP_05155509.1| molybdenum cofactor biosynthesis protein A [Brucella abortus bv. 3
           str. Tulya]
 gi|261213948|ref|ZP_05928229.1| molybdenum cofactor biosynthesis protein A [Brucella abortus bv. 3
           str. Tulya]
 gi|260915555|gb|EEX82416.1| molybdenum cofactor biosynthesis protein A [Brucella abortus bv. 3
           str. Tulya]
          Length = 344

 Score = 36.0 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 43/217 (19%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C       +                    D    E+++ +    + + +  + 
Sbjct: 35  CDFRCTYCMAEHMTFLP-----------------KKDLLTLEELDRLCSVFIEKGVRKLR 77

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-------RITLSTSG--FVPNIARVGEE 234
           + G GEPL     V+K        +G + S+         +TL+T+G         + + 
Sbjct: 78  LTG-GEPL-----VRK---NIMHLIG-NLSRHLKSGALDELTLTTNGSQLARFAGELADC 127

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               + +SL  ++ +    +        +   IDA +          +    V LK  ND
Sbjct: 128 GVRRINVSLDTLNPEKFRTITRWGDLSRVLEGIDAAQ-----KAGIHVKINAVALKDFND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +      LI+   G    + LI   P    E+  +DQ
Sbjct: 183 AE--IPELIRWAHGRGMDVTLIETMPMGEIEFDRTDQ 217


>gi|17987302|ref|NP_539936.1| molybdenum cofactor biosynthesis protein A [Brucella melitensis bv.
           1 str. 16M]
 gi|225852463|ref|YP_002732696.1| molybdenum cofactor biosynthesis protein A [Brucella melitensis
           ATCC 23457]
 gi|256044623|ref|ZP_05447527.1| molybdenum cofactor biosynthesis protein A [Brucella melitensis bv.
           1 str. Rev.1]
 gi|256113501|ref|ZP_05454335.1| molybdenum cofactor biosynthesis protein A [Brucella melitensis bv.
           3 str. Ether]
 gi|256264042|ref|ZP_05466574.1| molybdenum cofactor biosynthesis protein A [Brucella melitensis bv.
           2 str. 63/9]
 gi|260563974|ref|ZP_05834460.1| molybdenum cofactor biosynthesis protein A [Brucella melitensis bv.
           1 str. 16M]
 gi|265991048|ref|ZP_06103605.1| molybdenum cofactor biosynthesis protein A [Brucella melitensis bv.
           1 str. Rev.1]
 gi|265994883|ref|ZP_06107440.1| molybdenum cofactor biosynthesis protein A [Brucella melitensis bv.
           3 str. Ether]
 gi|24211991|sp|Q8YGY6|MOAA_BRUME RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|254811537|sp|C0RIT4|MOAA_BRUMB RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|17982982|gb|AAL52200.1| molybdenum cofactor biosynthesis protein a [Brucella melitensis bv.
           1 str. 16M]
 gi|225640828|gb|ACO00742.1| molybdenum cofactor biosynthesis protein A [Brucella melitensis
           ATCC 23457]
 gi|260153990|gb|EEW89082.1| molybdenum cofactor biosynthesis protein A [Brucella melitensis bv.
           1 str. 16M]
 gi|262765996|gb|EEZ11785.1| molybdenum cofactor biosynthesis protein A [Brucella melitensis bv.
           3 str. Ether]
 gi|263001832|gb|EEZ14407.1| molybdenum cofactor biosynthesis protein A [Brucella melitensis bv.
           1 str. Rev.1]
 gi|263094229|gb|EEZ18106.1| molybdenum cofactor biosynthesis protein A [Brucella melitensis bv.
           2 str. 63/9]
          Length = 344

 Score = 36.0 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 43/217 (19%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C       +                    D    E+++ +    + + +  + 
Sbjct: 35  CDFRCTYCMAEHMTFLP-----------------KKDLLTLEELDRLCSVFIEKGVRKLR 77

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-------RITLSTSG--FVPNIARVGEE 234
           + G GEPL     V+K        +G + S+         +TL+T+G         + + 
Sbjct: 78  LTG-GEPL-----VRK---NIMHLIG-NLSRHLKSGALDELTLTTNGSQLARFAGELADC 127

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               + +SL  ++ +    +        +   IDA +          +    V LK  ND
Sbjct: 128 GVRRINVSLDTLNPEKFRTITRWGDLSRVLEGIDAAQ-----KAGIHVKINAVALKDFND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +      LI+   G    + LI   P    E+  +DQ
Sbjct: 183 AE--IPELIRWAHGRGMDVTLIETMPMGEIEFDRTDQ 217


>gi|288818254|ref|YP_003432602.1| deoxyribonuclease, TatD family [Hydrogenobacter thermophilus TK-6]
 gi|288787654|dbj|BAI69401.1| deoxyribonuclease, TatD family [Hydrogenobacter thermophilus TK-6]
 gi|308751851|gb|ADO45334.1| hydrolase, TatD family [Hydrogenobacter thermophilus TK-6]
          Length = 454

 Score = 36.0 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 36/226 (15%)

Query: 87  KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146
           K L                  I       L ++    C+L C+FC        RN     
Sbjct: 246 KLLFNIGNNGKKDT-------ITYVINNKLYINLTNKCNLHCAFCQRER---ERN----- 290

Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206
                ++    +         E +       K   +V  G GEP      +K+       
Sbjct: 291 ----FMIKGYWVWTTRDPSVEEVIREIGDPTKYEEVVFCGYGEPTLRLSALKEIARYVKS 346

Query: 207 SMGLSFSKRRITLSTSGFV------PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260
             G      ++ + T+G +        I  +   + V  ++SL+A   +  N +    ++
Sbjct: 347 KGG------KVRVDTNGLMFTFLPREKIKELKGLVDV-WSVSLNAQDEETYNRVCRPAQQ 399

Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306
              + +++  +    L     +    V  +G+         L ++L
Sbjct: 400 EAFKKVMEFIKT--ALKEGFEVIATAVDYQGV--DIEKTKELAELL 441


>gi|294852307|ref|ZP_06792980.1| molybdenum cofactor biosynthesis protein A [Brucella sp. NVSL
           07-0026]
 gi|294820896|gb|EFG37895.1| molybdenum cofactor biosynthesis protein A [Brucella sp. NVSL
           07-0026]
          Length = 329

 Score = 36.0 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 43/217 (19%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C       +                    D    E+++ +    + + +  + 
Sbjct: 20  CDFRCTYCMAEHMTFLP-----------------KKDLLTLEELDRLCSVFIEKGVRKLR 62

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-------RITLSTSG--FVPNIARVGEE 234
           + G GEPL     V+K        +G + S+         +TL+T+G         + + 
Sbjct: 63  LTG-GEPL-----VRK---NIMHLIG-NLSRHLKSGALDELTLTTNGSQLARFAGELADC 112

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               + +SL  ++ +    +        +   IDA +          +    V LK  ND
Sbjct: 113 GVRRINVSLDTLNPEKFRTITRWGDLSRVLEGIDAAQ-----KAGIHVKINAVALKDFND 167

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +      LI+   G    + LI   P    E+  +DQ
Sbjct: 168 AE--IPELIRWAHGRGMDVTLIETMPMGEIEFDRTDQ 202


>gi|225627438|ref|ZP_03785475.1| molybdenum cofactor biosynthesis protein A [Brucella ceti str.
           Cudo]
 gi|254706840|ref|ZP_05168668.1| molybdenum cofactor biosynthesis protein A [Brucella pinnipedialis
           M163/99/10]
 gi|254710051|ref|ZP_05171862.1| molybdenum cofactor biosynthesis protein A [Brucella pinnipedialis
           B2/94]
 gi|256031546|ref|ZP_05445160.1| molybdenum cofactor biosynthesis protein A [Brucella pinnipedialis
           M292/94/1]
 gi|256159681|ref|ZP_05457434.1| molybdenum cofactor biosynthesis protein A [Brucella ceti
           M490/95/1]
 gi|256254949|ref|ZP_05460485.1| molybdenum cofactor biosynthesis protein A [Brucella ceti B1/94]
 gi|260168678|ref|ZP_05755489.1| molybdenum cofactor biosynthesis protein A [Brucella sp. F5/99]
 gi|261222132|ref|ZP_05936413.1| molybdenum cofactor biosynthesis protein A [Brucella ceti B1/94]
 gi|261314305|ref|ZP_05953502.1| molybdenum cofactor biosynthesis protein A [Brucella pinnipedialis
           M163/99/10]
 gi|261317598|ref|ZP_05956795.1| molybdenum cofactor biosynthesis protein A [Brucella pinnipedialis
           B2/94]
 gi|261758152|ref|ZP_06001861.1| molybdenum cofactor biosynthesis protein A [Brucella sp. F5/99]
 gi|265988632|ref|ZP_06101189.1| molybdenum cofactor biosynthesis protein A [Brucella pinnipedialis
           M292/94/1]
 gi|265998097|ref|ZP_06110654.1| molybdenum cofactor biosynthesis protein A [Brucella ceti
           M490/95/1]
 gi|225617443|gb|EEH14488.1| molybdenum cofactor biosynthesis protein A [Brucella ceti str.
           Cudo]
 gi|260920716|gb|EEX87369.1| molybdenum cofactor biosynthesis protein A [Brucella ceti B1/94]
 gi|261296821|gb|EEY00318.1| molybdenum cofactor biosynthesis protein A [Brucella pinnipedialis
           B2/94]
 gi|261303331|gb|EEY06828.1| molybdenum cofactor biosynthesis protein A [Brucella pinnipedialis
           M163/99/10]
 gi|261738136|gb|EEY26132.1| molybdenum cofactor biosynthesis protein A [Brucella sp. F5/99]
 gi|262552565|gb|EEZ08555.1| molybdenum cofactor biosynthesis protein A [Brucella ceti
           M490/95/1]
 gi|264660829|gb|EEZ31090.1| molybdenum cofactor biosynthesis protein A [Brucella pinnipedialis
           M292/94/1]
          Length = 344

 Score = 36.0 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 43/217 (19%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C       +                    D    E+++ +    + + +  + 
Sbjct: 35  CDFRCTYCMAEHMTFLP-----------------KKDLLTLEELDRLCSVFIEKGVRKLR 77

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-------RITLSTSG--FVPNIARVGEE 234
           + G GEPL     V+K        +G + S+         +TL+T+G         + + 
Sbjct: 78  LTG-GEPL-----VRK---NIMHLIG-NLSRHLKSGALDELTLTTNGSQLARFAGELADC 127

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               + +SL  ++ +    +        +   IDA +          +    V LK  ND
Sbjct: 128 GVRRINVSLDTLNPEKFRTITRWGDLSRVLEGIDAAQ-----KAGIHVKINAVALKDFND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +      LI+   G    + LI   P    E+  +DQ
Sbjct: 183 AE--IPELIRWAHGRGMDVTLIETMPMGEIEFDRTDQ 217


>gi|23501841|ref|NP_697968.1| molybdenum cofactor biosynthesis protein A [Brucella suis 1330]
 gi|161618912|ref|YP_001592799.1| molybdenum cofactor biosynthesis protein A [Brucella canis ATCC
           23365]
 gi|163843226|ref|YP_001627630.1| molybdenum cofactor biosynthesis protein A [Brucella suis ATCC
           23445]
 gi|254701716|ref|ZP_05163544.1| molybdenum cofactor biosynthesis protein A [Brucella suis bv. 5
           str. 513]
 gi|254704258|ref|ZP_05166086.1| molybdenum cofactor biosynthesis protein A [Brucella suis bv. 3
           str. 686]
 gi|256369383|ref|YP_003106891.1| molybdenum cofactor biosynthesis protein A [Brucella microti CCM
           4915]
 gi|261752267|ref|ZP_05995976.1| molybdenum cofactor biosynthesis protein A [Brucella suis bv. 5
           str. 513]
 gi|261754926|ref|ZP_05998635.1| molybdenum cofactor biosynthesis protein A [Brucella suis bv. 3
           str. 686]
 gi|38258159|sp|Q8G0X4|MOAA_BRUSU RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|189028683|sp|A9MAX5|MOAA_BRUC2 RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|189028684|sp|B0CLT0|MOAA_BRUSI RecName: Full=Molybdenum cofactor biosynthesis protein A
 gi|23347777|gb|AAN29883.1| molybdenum cofactor biosynthesis protein A [Brucella suis 1330]
 gi|161335723|gb|ABX62028.1| Molybdenum cofactor biosynthesis protein A [Brucella canis ATCC
           23365]
 gi|163673949|gb|ABY38060.1| molybdenum cofactor biosynthesis protein A [Brucella suis ATCC
           23445]
 gi|255999543|gb|ACU47942.1| molybdenum cofactor biosynthesis protein A [Brucella microti CCM
           4915]
 gi|261742020|gb|EEY29946.1| molybdenum cofactor biosynthesis protein A [Brucella suis bv. 5
           str. 513]
 gi|261744679|gb|EEY32605.1| molybdenum cofactor biosynthesis protein A [Brucella suis bv. 3
           str. 686]
          Length = 344

 Score = 36.0 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 43/217 (19%)

Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
           C   C++C       +                    D    E+++ +    + + +  + 
Sbjct: 35  CDFRCTYCMAEHMTFLP-----------------KKDLLTLEELDRLCSVFIEKGVRKLR 77

Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-------RITLSTSG--FVPNIARVGEE 234
           + G GEPL     V+K        +G + S+         +TL+T+G         + + 
Sbjct: 78  LTG-GEPL-----VRK---NIMHLIG-NLSRHLKSGALDELTLTTNGSQLARFAGELADC 127

Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294
               + +SL  ++ +    +        +   IDA +          +    V LK  ND
Sbjct: 128 GVRRINVSLDTLNPEKFRTITRWGDLSRVLEGIDAAQ-----KAGIHVKINAVALKDFND 182

Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331
           +      LI+   G    + LI   P    E+  +DQ
Sbjct: 183 AE--IPELIRWAHGRGMDVTLIETMPMGEIEFDRTDQ 217


>gi|288574358|ref|ZP_06392715.1| Radical SAM domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570099|gb|EFC91656.1| Radical SAM domain protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 329

 Score = 36.0 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 59/198 (29%), Gaps = 36/198 (18%)

Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
           VGCS+ C FC                  Q        G  P  +     +     R  ++
Sbjct: 80  VGCSMNCPFC------------------QNWRLTRFDGAPPTTDMSPSDISDLTDRSGTD 121

Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGEEIGVMLA 240
           +V     EPL +++ +   L +          KR + ++     P  +  +   I     
Sbjct: 122 LVAFTYNEPLVSYEFLIDILPMLRKK-----GKRTVLVTNGQIAPAPLKTLLPSIDCA-N 175

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
           + L     D             LE      +          +   ++ + GI+D   +  
Sbjct: 176 VDLKTFKEDT-----YAKMGGSLEATKSTIKAMHEK--GIHLEISWLAVPGISDDIEEFE 228

Query: 301 NLIKILKG----IPAKIN 314
            +++ L      IP  IN
Sbjct: 229 RMLRWLSDLDPAIPLHIN 246


>gi|238912798|ref|ZP_04656635.1| KamA family protein [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 342

 Score = 36.0 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 45/205 (21%)

Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
               ++R  L V    GC++ C +C        R+    E                    
Sbjct: 105 LHKYQNRALLLVKG--GCAVNCRYC------FRRHFPYAE------------NQGNKRNW 144

Query: 167 IEGMVIPSVGRKISNIVMMGMGEPL----CNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
              +   +   ++  I+  G G+PL       D +   L        L            
Sbjct: 145 TVALEYIAAHPELDEIIFSG-GDPLMAKDHELDWLLTQLEAIKHVKRLRI---------- 193

Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282
                 +R+   I   +   L A  +  R  ++ +N       + +A            +
Sbjct: 194 -----HSRLPIVIPARITDELVARFDQSRLQILLVNHINHANEVDEAFGLAMKKLRHVGV 248

Query: 283 TF--EYVMLKGINDSPRDALNLIKI 305
           T   + V+L+G+ND+   A  L  +
Sbjct: 249 TLLNQSVLLRGVNDN---ARTLANL 270


>gi|215489691|ref|YP_002332122.1| predicted pyruvate formate lyase activating enzyme [Escherichia
           coli O127:H6 str. E2348/69]
 gi|215267763|emb|CAS12225.1| predicted pyruvate formate lyase activating enzyme [Escherichia
           coli O127:H6 str. E2348/69]
          Length = 287

 Score = 36.0 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE-------YLCSDQKDIVTFSE 339
           +++ G  D  +    L  ++KG+      I  N +           +  +  +D+   ++
Sbjct: 213 LVIPGQVDYLQHIEELAALIKGLGDV--PIRLNAFHAHGVYGEAQSWPSATPEDVEQLAD 270

Query: 340 CIKRSGYS 347
            ++  G S
Sbjct: 271 ALRERGVS 278


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.151    0.472 

Lambda     K      H
   0.267   0.0461    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,779,684,702
Number of Sequences: 14124377
Number of extensions: 347646605
Number of successful extensions: 1018931
Number of sequences better than 10.0: 3669
Number of HSP's better than 10.0 without gapping: 4510
Number of HSP's successfully gapped in prelim test: 1478
Number of HSP's that attempted gapping in prelim test: 994741
Number of HSP's gapped (non-prelim): 6486
length of query: 384
length of database: 4,842,793,630
effective HSP length: 141
effective length of query: 243
effective length of database: 2,851,256,473
effective search space: 692855322939
effective search space used: 692855322939
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 82 (36.0 bits)